Citrus Sinensis ID: 017873

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MTEEDQDQDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTVEDLERRVSTLRQQLQEAEAELERLRKGKQVA
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHccccccccEEEccccccEEEEcccHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHcccccccccccccHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHccccccccEEEccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccHccHHHHHHHHHHHHHccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEcccccHHcccHHHHHHHHHHHccccccccccccEEEEEEcccEEEEEEccccccHHHHHcccccc
Coil and Loop (DISEMBL)
mteedqdqdqeleipegsvrnileqdslkwvfvggkggvgktTCSSILSILLaevrpsvliistdpahnlsdAFQQrftktptlvngfsnlyamevdpsveeetgstegmDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYscivfdtaptghtlrllqfpsTLEKGLDKMMSLKNKFGGMINQMTRlfgiddefgeDALLGRLEGMKDVIERVNkqfkdpdlttfVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDdfhitklpllpeevTGIEALKAFSqhfvtpyqpstsrdtVEDLERRVSTLRQQLQEAEAELERLRKGKQVA
Flexible Loop (DISEMBL)
mteedqdqdqeleipegsvrnileqdsLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNkqfkdpdlttFVCVCIPEFLSLYETERLVQELTKfeidthniiinqvlyddEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSqhfvtpyqpstsrdtVEDLERRVSTLRQQLQEAEAELERLRKGKQVA
Low Complexity Region (SEG)
MTeedqdqdqeLEIPEGSVRNILEQDSLKWVFvggkggvgkttCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTVEDLERRVSTlrqqlqeaeaelerlrKGKQVA
Disordered region (IsUnstruct)
********************NILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAME******************FSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTP*****************************************
Disordered Region (DISOPRED)
****************GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNK*********************ALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQP*********LERRVSTLRQQLQEAEAELE**RK*****
Disordered Region (DISEMBL)
***********LEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVD***********GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPY************ERRVSTLRQQLQEA**************
Disordered Region (DISPRO)
***********LEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTVEDLERRVSTLRQQLQEAEAEL****K*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTEEDQDQDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTxxxxxxxxxxxxxxxxxxxxxxxxxxxxKQVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q16MG9	341	ATPase ASNA1 homolog OS=A	N/A	no	0.893	0.956	0.571	2e-99
A7RQM5	334	ATPase ASNA1 homolog OS=N	N/A	no	0.852	0.931	0.588	5e-98
B0WEV5	348	ATPase ASNA1 homolog OS=C	N/A	no	0.852	0.893	0.588	8e-98
A8N0V8	326	ATPase GET3 OS=Coprinopsi	N/A	no	0.846	0.947	0.598	1e-96
Q5TRE7	337	ATPase ASNA1 homolog OS=A	yes	no	0.882	0.955	0.559	2e-96
B4N645	335	ATPase ASNA1 homolog OS=D	N/A	no	0.879	0.958	0.556	3e-96
B4H8J5	336	ATPase ASNA1 homolog OS=D	N/A	no	0.863	0.937	0.568	3e-96
Q28YJ2	336	ATPase ASNA1 homolog OS=D	yes	no	0.863	0.937	0.568	4e-96
B3MHB7	336	ATPase ASNA1 homolog OS=D	N/A	no	0.863	0.937	0.571	5e-96
B4KTG7	332	ATPase ASNA1 homolog OS=D	N/A	no	0.852	0.936	0.569	4e-95

>sp|Q16MG9|ASNA_AEDAE ATPase ASNA1 homolog OS=Aedes aegypti GN=AAEL011136 PE=3 SV=1

 Score =  363 bits (931), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 193/338 (57%), Positives = 249/338 (73%), Gaps = 12/338 (3%)

Query: 9   DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
           D + E    S+ NI++Q++LKWVFVGGKGGVGKTTCS  L++ LA+VR SVLIISTDPAH
Sbjct: 2   DTDFEPLAPSLENIIDQETLKWVFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAH 61

Query: 69  NLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSV----------EEETGSTEGMDSLFSELA 118
           N+SDAF Q+FTK PT VNGF+NL+AME+DP+V          E E  + +    +F E+ 
Sbjct: 62  NISDAFDQKFTKVPTKVNGFNNLFAMEIDPNVGLNELPDEYFEGENSAMKLSKGVFQEII 121

Query: 119 NAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNK 178
            A+PGIDEAMS+AE++KLV+ M++S +VFDTAPTGHTLRLL FP  +EKGL K++ LK K
Sbjct: 122 GALPGIDEAMSYAEVMKLVKAMNFSVVVFDTAPTGHTLRLLSFPQVVEKGLGKLLMLKMK 181

Query: 179 FGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSL 238
               I+QM  LFG+ D F  D L G+LE M  +I +VN+QF++PD TTFVCVCI EFLSL
Sbjct: 182 LAPFISQMGSLFGMQD-FNADTLTGKLEEMLTIIRQVNEQFRNPDQTTFVCVCIAEFLSL 240

Query: 239 YETERLVQELTKFEIDTHNIIINQVLYDDE-DVESKLLRARMRMQQKYLDQFYMLYDDFH 297
           YETERLVQELTK  IDTHNII+NQ+L+  E      +  AR ++Q KYLDQ   LY+DF+
Sbjct: 241 YETERLVQELTKCGIDTHNIIVNQLLFRREGQAPCAMCSARYKVQGKYLDQIADLYEDFY 300

Query: 298 ITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTVE 335
           + KLPLL +EV G+E +K FS++ + PY P+ + +T E
Sbjct: 301 VVKLPLLDKEVRGVENVKKFSEYLIKPYCPNGTNETQE 338

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.
Aedes aegypti (taxid: 7159)
EC: 3EC: .EC: 6EC: .EC: -EC: .EC: -

>sp|A7RQM5|ASNA_NEMVE ATPase ASNA1 homolog OS=Nematostella vectensis GN=v1g161623 PE=3 SV=1

 Score =  358 bits (918), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 189/321 (58%), Positives = 237/321 (73%), Gaps = 10/321 (3%)

Query: 16  EGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
           E S++NI+EQDSLKW+FVGGKGGVGKTTCS  +++ LA  R SVLIISTDPAHN+SDAF 
Sbjct: 15  EPSIKNIVEQDSLKWIFVGGKGGVGKTTCSCSIAVQLALTRRSVLIISTDPAHNISDAFD 74

Query: 76  QRFTKTPTLVNGFSNLYAMEVDPSVEEET---GSTEGMD------SLFSELANAIPGIDE 126
           Q+F+K PTLV GF NLYAME+DP++          EG D      ++ SEL  A PGIDE
Sbjct: 75  QKFSKVPTLVKGFQNLYAMEIDPNLGFSNLPEDYFEGPDMMSMGKAMISELLGAFPGIDE 134

Query: 127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
           AMSFAE+++LV +MD+S ++FDTAPTGHTLRLL FPS +EK L K++SLKN     I+Q 
Sbjct: 135 AMSFAEVMRLVNSMDFSTVIFDTAPTGHTLRLLSFPSVIEKSLGKILSLKNSISPFISQF 194

Query: 187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246
             L G+ D    D +  +LE    VI++V+ QFK+PD TTFVCVCI EFLSLYETERL+Q
Sbjct: 195 GSLLGMQD-LNADQMTSKLEETLPVIKQVSAQFKNPDHTTFVCVCIAEFLSLYETERLIQ 253

Query: 247 ELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPE 306
           ELTK EIDTHNII+NQ+++  +  E  L  AR R+Q KYLDQ   LY+DFH+T+LPLL  
Sbjct: 254 ELTKSEIDTHNIIVNQLVFPSKREECNLCEARYRIQHKYLDQIQDLYEDFHVTRLPLLTH 313

Query: 307 EVTGIEALKAFSQHFVTPYQP 327
           EV G++ +  FS + VTPY+P
Sbjct: 314 EVRGVDKILNFSSNLVTPYKP 334

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.

Nematostella vectensis (taxid: 45351)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|B0WEV5|ASNA_CULQU ATPase ASNA1 homolog OS=Culex quinquefasciatus GN=CPIJ005690 PE=3 SV=1

 Score =  357 bits (916), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 190/323 (58%), Positives = 238/323 (73%), Gaps = 12/323 (3%)

Query: 16  EGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
           E S+RNI++Q SLKW+FVGGKGGVGKTTCS  L++ LA+ R SVLIISTDPAHN+SDAF 
Sbjct: 9   EPSLRNIIDQKSLKWIFVGGKGGVGKTTCSCSLAVQLAKDRESVLIISTDPAHNISDAFD 68

Query: 76  QRFTKTPTLVNGFSNLYAMEVDPSV----------EEETGSTEGMDSLFSELANAIPGID 125
           Q+FTK P+ VNGF NL+AME+DP+V          E E  + +    +F E+  A+PGID
Sbjct: 69  QKFTKVPSKVNGFDNLFAMEIDPNVGLNELPDEYFEGENSAMKLSKGVFQEIIGALPGID 128

Query: 126 EAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQ 185
           EAMS+AE++KLV+ M++S +VFDTAPTGHTLRLL FP  +EKGL K++ LK K    I+Q
Sbjct: 129 EAMSYAEVMKLVKAMNFSTVVFDTAPTGHTLRLLSFPQVVEKGLGKLLRLKMKLAPFISQ 188

Query: 186 MTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLV 245
           M  LFG+ D F  D L G+LE M  +I +VN+QF++PD TTFVCVCI EFLSLYETERLV
Sbjct: 189 MGSLFGMQD-FNADTLTGKLEEMLTIIRQVNEQFRNPDQTTFVCVCIAEFLSLYETERLV 247

Query: 246 QELTKFEIDTHNIIINQVLYDDE-DVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLL 304
           QELTK  IDTHNII+NQ+L+  E      +  AR ++Q KYLDQ   LY+DFH+ KLPLL
Sbjct: 248 QELTKCGIDTHNIIVNQLLFRREGQAPCAMCSARYKVQGKYLDQIADLYEDFHVVKLPLL 307

Query: 305 PEEVTGIEALKAFSQHFVTPYQP 327
            +EV G E +K FS + + PY P
Sbjct: 308 DKEVRGAEKVKKFSVNLIEPYSP 330

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.

Culex quinquefasciatus (taxid: 7176)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|A8N0V8|GET3_COPC7 ATPase GET3 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=GET3 PE=3 SV=1

 Score =  353 bits (906), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 189/316 (59%), Positives = 237/316 (75%), Gaps = 7/316 (2%)

Query: 18  SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77
           +++NIL+Q SLKW+F GGKGGVGKTT S  L+I LA+VR SVL+ISTDPAHNLSDAF Q+
Sbjct: 9   TLQNILDQKSLKWIFCGGKGGVGKTTTSCSLAIQLAKVRESVLLISTDPAHNLSDAFGQK 68

Query: 78  FTKTPTLVNGFSNLYAMEVDPS-----VEEETGSTEGMDSLFSELANAIPGIDEAMSFAE 132
           F+K  T VNGF NL+AME+DP+     + E++ S   M S+  +LA AIPG+DEAMSFAE
Sbjct: 69  FSKDATKVNGFDNLFAMEIDPTSAIQEMVEQSDSNGMMGSMMQDLAFAIPGVDEAMSFAE 128

Query: 133 MLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGI 192
           ++K V++M YS IVFDTAPTGHTLR L FP+ LEK L K+ +L ++FG MI+QM+ + G 
Sbjct: 129 IMKHVKSMQYSVIVFDTAPTGHTLRFLSFPTVLEKALGKLSTLGSRFGPMISQMSSMMGG 188

Query: 193 DDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE 252
           +    ED +  +LE M+ VI  VN QFKDP+ TTFVCVCI EFLSLYETERLVQELT +E
Sbjct: 189 EAGSQED-MFAKLESMRAVITEVNTQFKDPEKTTFVCVCISEFLSLYETERLVQELTAYE 247

Query: 253 IDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDD-FHITKLPLLPEEVTGI 311
           IDTHNI++NQ+L+  +    +    R +MQQKYL + + LYD+ FHI KLPLL EEV G 
Sbjct: 248 IDTHNIVVNQLLFPKKSSNCEHCSVRHKMQQKYLAEAHELYDEFFHIVKLPLLTEEVRGP 307

Query: 312 EALKAFSQHFVTPYQP 327
           E LK FS+  V PYQP
Sbjct: 308 EKLKEFSEMLVKPYQP 323

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.

Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (taxid: 240176)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q5TRE7|ASNA_ANOGA ATPase ASNA1 homolog OS=Anopheles gambiae GN=AGAP005782 PE=3 SV=3

 Score =  352 bits (903), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 187/334 (55%), Positives = 240/334 (71%), Gaps = 12/334 (3%)

Query: 11  ELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL 70
           E E  E +++NI++Q SLKWVFVGGKGGVGKTTCS  L+I LA+ R SVLIISTDPAHN+
Sbjct: 4   EFEPCEPTLQNIIDQASLKWVFVGGKGGVGKTTCSCSLAIQLAQKRESVLIISTDPAHNI 63

Query: 71  SDAFQQRFTKTPTLVNGFSNLYAMEVDPSV----------EEETGSTEGMDSLFSELANA 120
           SDAF Q+FTK PT VNGF NL+AME+DP+V          E+E         +  E+   
Sbjct: 64  SDAFDQKFTKVPTKVNGFDNLFAMEIDPNVGISELPDEYFEDEASPLNVGKGMLQEVIGT 123

Query: 121 IPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFG 180
           +PGIDEAMS+AE++KLV+ M++S +VFDTAPTGHTLRLL FP  +EKGL K++ LK K  
Sbjct: 124 LPGIDEAMSYAEVMKLVKAMNFSVVVFDTAPTGHTLRLLSFPQVVEKGLGKLLRLKMKLA 183

Query: 181 GMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYE 240
            +I QM  LFG+ D F  D +  +LE M  +I++VN+QF +P  TTFVCVCI EFLSLYE
Sbjct: 184 PIITQMGSLFGVQD-FNGDTIANKLEEMLSIIQQVNEQFHNPQQTTFVCVCIAEFLSLYE 242

Query: 241 TERLVQELTKFEIDTHNIIINQVLYDDEDVE-SKLLRARMRMQQKYLDQFYMLYDDFHIT 299
           TERLVQELTK  IDTHNII+NQ+++  +  +   +  AR ++Q+KYLDQ   LY+DFH+ 
Sbjct: 243 TERLVQELTKCGIDTHNIIVNQLMFQKKGQQPCSMCSARCKVQEKYLDQIADLYEDFHVV 302

Query: 300 KLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDT 333
           +LPLL EEV G+E +K FS++ + PY P     T
Sbjct: 303 RLPLLDEEVRGVEKVKKFSRNLLVPYSPDAPPAT 336

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.

Anopheles gambiae (taxid: 7165)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|B4N645|ASNA_DROWI ATPase ASNA1 homolog OS=Drosophila willistoni GN=GK17805 PE=3 SV=1

 Score =  352 bits (902), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 186/334 (55%), Positives = 244/334 (73%), Gaps = 13/334 (3%)

Query: 9   DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
           D+ LE  E S++N+++Q SLKW+FVGGKGGVGKTTCSS L++ LA+ R SVLIISTDPAH
Sbjct: 3   DEPLEPLEPSLQNLIDQQSLKWIFVGGKGGVGKTTCSSSLAVQLAKKRDSVLIISTDPAH 62

Query: 69  NLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSV-------EEETGSTEGM---DSLFSELA 118
           N+SDAF Q+FTK PT VNGF NL+AME+DP+        E   G  E +     +  E+ 
Sbjct: 63  NISDAFDQKFTKVPTKVNGFDNLFAMEIDPNAGLNELPEEYFDGENEALRVGKGVMQEMI 122

Query: 119 NAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNK 178
           NA+PGIDEAMS+AE++KLV+ M++S +VFDTAPTGHTLRL+ FP  +EKGL K++ LK K
Sbjct: 123 NALPGIDEAMSYAEVMKLVKGMNFSVVVFDTAPTGHTLRLIAFPQVVEKGLGKLLRLKMK 182

Query: 179 FGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSL 238
              ++ Q   + G+ D    D+L  +L+ M  VI +VN+QF++PD TTFVCVCI EF SL
Sbjct: 183 VAPILTQFVSMLGMTD-VSADSLSQKLDDMLRVISQVNEQFQNPDQTTFVCVCIAEFFSL 241

Query: 239 YETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHI 298
           YETERLVQELTK  ID HNII+NQ+LY  +     +  +R ++Q+KYLDQ   LY+DFH+
Sbjct: 242 YETERLVQELTKCGIDVHNIIVNQLLYTHK--SCSMCTSRFKIQEKYLDQIADLYEDFHV 299

Query: 299 TKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRD 332
            KLPLL +EV G + +KAFS+H +TPY+P  + D
Sbjct: 300 IKLPLLEKEVRGSDGIKAFSEHLITPYEPPATND 333

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.

Drosophila willistoni (taxid: 7260)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|B4H8J5|ASNA_DROPE ATPase ASNA1 homolog OS=Drosophila persimilis GN=GL20106 PE=3 SV=1

 Score =  352 bits (902), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 186/327 (56%), Positives = 243/327 (74%), Gaps = 12/327 (3%)

Query: 12  LEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71
           LE    S++N++EQDSLKW+FVGGKGGVGKTTCSS L++ LA+VR SVLIISTDPAHN+S
Sbjct: 5   LEPLPASLQNLVEQDSLKWIFVGGKGGVGKTTCSSSLAVQLAKVRESVLIISTDPAHNIS 64

Query: 72  DAFQQRFTKTPTLVNGFSNLYAMEVDPSV-------EEETGSTEGM---DSLFSELANAI 121
           DAF Q+FTK PT VNGF NL+AME+DP+        E   G  E +     +  E+ NA+
Sbjct: 65  DAFDQKFTKVPTKVNGFDNLFAMEIDPNAGLNELPEEYFEGENEALRVSKGVMQEMINAL 124

Query: 122 PGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG 181
           PGIDEAMS+AE++KLV+ M++S +VFDTAPTGHTLRL+ FP  +EKGL K++ LK K   
Sbjct: 125 PGIDEAMSYAEVMKLVKGMNFSVVVFDTAPTGHTLRLIAFPQVVEKGLGKLLRLKMKVAP 184

Query: 182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYET 241
           ++ Q   + G+ D    D L  +L+ M  VI +VN+QFK+PD TTFVCVCI EF SLYET
Sbjct: 185 LLTQFVSMLGMAD-VNVDTLSQKLDDMLRVITQVNEQFKNPDQTTFVCVCIAEFFSLYET 243

Query: 242 ERLVQELTKFEIDTHNIIINQVLY-DDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITK 300
           ERL+QELTK  ID HNII+NQ+L+ ++     K+  +R ++Q+KYLDQ   LY+DFH+TK
Sbjct: 244 ERLIQELTKCGIDVHNIIVNQLLFLNNSHSSCKMCASRYKIQEKYLDQIADLYEDFHVTK 303

Query: 301 LPLLPEEVTGIEALKAFSQHFVTPYQP 327
           LPLL +EV G +++KAFS++ +TPY P
Sbjct: 304 LPLLEKEVRGPDSIKAFSENLMTPYDP 330

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.

Drosophila persimilis (taxid: 7234)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q28YJ2|ASNA_DROPS ATPase ASNA1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA14038 PE=3 SV=1

 Score =  351 bits (901), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 186/327 (56%), Positives = 243/327 (74%), Gaps = 12/327 (3%)

Query: 12  LEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71
           LE    S++N++EQDSLKW+FVGGKGGVGKTTCSS L++ LA+VR SVLIISTDPAHN+S
Sbjct: 5   LEPLPASLQNLVEQDSLKWIFVGGKGGVGKTTCSSSLAVQLAKVRESVLIISTDPAHNIS 64

Query: 72  DAFQQRFTKTPTLVNGFSNLYAMEVDPSV-------EEETGSTEGM---DSLFSELANAI 121
           DAF Q+FTK PT VNGF NL+AME+DP+        E   G  E +     +  E+ NA+
Sbjct: 65  DAFDQKFTKVPTKVNGFDNLFAMEIDPNAGLNELPEEYFEGENEALRVSKGVMQEMINAL 124

Query: 122 PGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG 181
           PGIDEAMS+AE++KLV+ M++S +VFDTAPTGHTLRL+ FP  +EKGL K++ LK K   
Sbjct: 125 PGIDEAMSYAEVMKLVKGMNFSVVVFDTAPTGHTLRLIAFPQVVEKGLGKLLRLKMKVAP 184

Query: 182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYET 241
           ++ Q   + G+ D    D L  +L+ M  VI +VN+QFK+PD TTFVCVCI EF SLYET
Sbjct: 185 LLTQFASMLGMAD-VNVDTLSQKLDDMLRVITQVNEQFKNPDQTTFVCVCIAEFFSLYET 243

Query: 242 ERLVQELTKFEIDTHNIIINQVLY-DDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITK 300
           ERL+QELTK  ID HNII+NQ+L+ ++     K+  +R ++Q+KYLDQ   LY+DFH+TK
Sbjct: 244 ERLIQELTKCGIDVHNIIVNQLLFLNNSHSACKMCASRYKIQEKYLDQIADLYEDFHVTK 303

Query: 301 LPLLPEEVTGIEALKAFSQHFVTPYQP 327
           LPLL +EV G +++KAFS++ +TPY P
Sbjct: 304 LPLLEKEVRGPDSIKAFSENLMTPYDP 330

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|B3MHB7|ASNA_DROAN ATPase ASNA1 homolog OS=Drosophila ananassae GN=GF11712 PE=3 SV=1

 Score =  351 bits (900), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 187/327 (57%), Positives = 244/327 (74%), Gaps = 12/327 (3%)

Query: 12  LEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71
           LE  E S++N++EQDSLKW+FVGGKGGVGKTTCSS L++ LA+VR SVLIISTDPAHN+S
Sbjct: 5   LEPLEPSLQNLVEQDSLKWIFVGGKGGVGKTTCSSSLAVQLAKVRESVLIISTDPAHNIS 64

Query: 72  DAFQQRFTKTPTLVNGFSNLYAMEVDPSV-------EEETGSTEGM---DSLFSELANAI 121
           DAF Q+FTK PT VNGF NL+AME+DP+        E   G  E +     +  E+ NA+
Sbjct: 65  DAFDQKFTKVPTKVNGFDNLFAMEIDPNAGLNELPEEYFEGENEALRVSKGVMQEMINAL 124

Query: 122 PGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG 181
           PGIDEAMS+AE++KLV+ M++S +VFDTAPTGHTLRL+ FP  +EKGL K++ LK K   
Sbjct: 125 PGIDEAMSYAEVMKLVKGMNFSVVVFDTAPTGHTLRLIAFPQVVEKGLGKLLRLKMKVAP 184

Query: 182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYET 241
           M+ Q   + G+ D    D L  +L+ M  +I +VN+QFK+PD TTFVCVCI EF SLYET
Sbjct: 185 MLTQFVSMLGMAD-VNADTLSQKLDDMLRIITQVNEQFKNPDQTTFVCVCIAEFFSLYET 243

Query: 242 ERLVQELTKFEIDTHNIIINQVLYDDEDVES-KLLRARMRMQQKYLDQFYMLYDDFHITK 300
           ERLVQELTK  ID HNII+NQ+L+     +S  +  +R ++Q+KYLDQ   LY+DFH+TK
Sbjct: 244 ERLVQELTKCGIDVHNIIVNQLLFLQNSHDSCSMCASRYKIQEKYLDQIADLYEDFHVTK 303

Query: 301 LPLLPEEVTGIEALKAFSQHFVTPYQP 327
           LPLL +EV G E++++FS++ +TPY+P
Sbjct: 304 LPLLEKEVRGPESIRSFSENLMTPYEP 330

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.

Drosophila ananassae (taxid: 7217)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|B4KTG7|ASNA_DROMO ATPase ASNA1 homolog OS=Drosophila mojavensis GN=GI19524 PE=3 SV=1

 Score =  348 bits (893), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 184/323 (56%), Positives = 243/323 (75%), Gaps = 12/323 (3%)

Query: 16  EGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
           E S++N++EQ+SLKW+FVGGKGGVGKTTCSS L++ L++VR SVLIISTDPAHN+SDAF 
Sbjct: 9   EPSLQNLVEQESLKWIFVGGKGGVGKTTCSSSLAVQLSKVRESVLIISTDPAHNISDAFD 68

Query: 76  QRFTKTPTLVNGFSNLYAMEVDPSV-------EEETGSTEGM---DSLFSELANAIPGID 125
           Q+FTK PT VNGF NL+AME+DP+        E   G  E +     +  E+ NA+PGID
Sbjct: 69  QKFTKVPTKVNGFDNLFAMEIDPNAGLGELPDEYFEGENEALRVSKGVMQEMINALPGID 128

Query: 126 EAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQ 185
           EAMS+AE++KLV+ M++S +VFDTAPTGHTLRL+ FP  +EKGL K++ LK K   +++Q
Sbjct: 129 EAMSYAEVMKLVKGMNFSVVVFDTAPTGHTLRLIAFPQVVEKGLGKLLRLKMKLAPLLSQ 188

Query: 186 MTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLV 245
              + G+ D    D L  +L+ M  VI +VN+QFK+PD TTFVCVCI EF SLYETERLV
Sbjct: 189 FVSMLGMAD-VNADTLSQKLDDMLRVITQVNEQFKNPDQTTFVCVCIAEFFSLYETERLV 247

Query: 246 QELTKFEIDTHNIIINQVLYDDEDVES-KLLRARMRMQQKYLDQFYMLYDDFHITKLPLL 304
           QELTK  ID HNII+NQ+L+ D+   S  +  +R ++Q+KYLDQ   LY+DFH+TKLPLL
Sbjct: 248 QELTKCGIDVHNIIVNQLLFLDKSHNSCSMCASRFKIQEKYLDQIADLYEDFHVTKLPLL 307

Query: 305 PEEVTGIEALKAFSQHFVTPYQP 327
            +EV G E++K+FS++ + PY+P
Sbjct: 308 EKEVRGPESIKSFSENLMIPYKP 330

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.

Drosophila mojavensis (taxid: 7230)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
224067834	358	predicted protein [Populus trichocarpa]	0.961	0.980	0.886	1e-177
255541428	360	arsenical pump-driving atpase, putative	0.967	0.980	0.875	1e-176
224127550	358	predicted protein [Populus trichocarpa]	0.961	0.980	0.863	1e-172
449454494	355	PREDICTED: ATPase ASNA1 homolog [Cucumis	0.961	0.988	0.855	1e-172
296089136	357	unnamed protein product [Vitis vinifera]	0.964	0.985	0.864	1e-171
359489404	366	PREDICTED: ATPase ASNA1 homolog [Vitis v	0.964	0.961	0.864	1e-171
388510106	356	unknown [Lotus japonicus]	0.958	0.983	0.849	1e-167
18378897	353	putative anion-transporting ATPase [Arab	0.956	0.988	0.822	1e-164
297842932	353	hypothetical protein ARALYDRAFT_470088 [	0.956	0.988	0.82	1e-163
217071738	358	unknown [Medicago truncatula]	0.956	0.974	0.825	1e-163

>gi|224067834|ref|XP_002302556.1| predicted protein [Populus trichocarpa] gi|222844282|gb|EEE81829.1| predicted protein [Populus trichocarpa]

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 312/352 (88%), Positives = 339/352 (96%), Gaps = 1/352 (0%)

Query: 13  EIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD 72
           +IP+G+VRNIL+QD+LKWVFVGGKGGVGKTTCSSILSILLA+VR SVLIISTDPAHNLSD
Sbjct: 5   DIPDGTVRNILDQDTLKWVFVGGKGGVGKTTCSSILSILLAQVRSSVLIISTDPAHNLSD 64

Query: 73  AFQQRFTKTPTLVNGFSNLYAMEVDPSVE-EETGSTEGMDSLFSELANAIPGIDEAMSFA 131
           AFQQRFTKTPTLVNGFSNLYAMEVDP+VE ++ G +EGMDSLFSELANAIPGIDEAMSFA
Sbjct: 65  AFQQRFTKTPTLVNGFSNLYAMEVDPNVENDDIGGSEGMDSLFSELANAIPGIDEAMSFA 124

Query: 132 EMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG 191
           EMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGL K+MSLK+KFGG+I QMTRLFG
Sbjct: 125 EMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLQKVMSLKSKFGGLIGQMTRLFG 184

Query: 192 IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 251
           IDDEFGEDA+LGRLEGMKDVIE+VNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF
Sbjct: 185 IDDEFGEDAILGRLEGMKDVIEQVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 244

Query: 252 EIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGI 311
           EIDTHNIIINQVLYD+EDVESKLL+ARMRMQQKYLDQFYMLYDDF+ITKLPLLP+EVTG+
Sbjct: 245 EIDTHNIIINQVLYDEEDVESKLLKARMRMQQKYLDQFYMLYDDFNITKLPLLPQEVTGV 304

Query: 312 EALKAFSQHFVTPYQPSTSRDTVEDLERRVSTLRQQLQEAEAELERLRKGKQ 363
           EAL+A S HF +PYQPSTSR  VEDLERR+STL+ QL+ AEAEL+RL+KGKQ
Sbjct: 305 EALRALSSHFTSPYQPSTSRSAVEDLERRISTLKLQLEHAEAELDRLQKGKQ 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541428|ref|XP_002511778.1| arsenical pump-driving atpase, putative [Ricinus communis] gi|223548958|gb|EEF50447.1| arsenical pump-driving atpase, putative [Ricinus communis]

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 310/354 (87%), Positives = 343/354 (96%), Gaps = 1/354 (0%)

Query: 13  EIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD 72
           EIPEG+V+NILEQD+LKWVFVGGKGGVGKTTCSS+LSILLA VR SVLIISTDPAHNLSD
Sbjct: 7   EIPEGTVQNILEQDTLKWVFVGGKGGVGKTTCSSVLSILLARVRSSVLIISTDPAHNLSD 66

Query: 73  AFQQRFTKTPTLVNGFSNLYAMEVDPSVE-EETGSTEGMDSLFSELANAIPGIDEAMSFA 131
           AFQQRFTKTPTLVNGF+NL+AMEVDP+VE E+ G ++GMDS+FSELA+AIPGIDEAMSFA
Sbjct: 67  AFQQRFTKTPTLVNGFTNLFAMEVDPNVENEDVGGSDGMDSVFSELASAIPGIDEAMSFA 126

Query: 132 EMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG 191
           EMLKLVQTMDYS IVFDTAPTGHTLRLLQFPSTLEKGL KMMSLK+KFGG++NQ+TRLFG
Sbjct: 127 EMLKLVQTMDYSVIVFDTAPTGHTLRLLQFPSTLEKGLQKMMSLKSKFGGLLNQVTRLFG 186

Query: 192 IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 251
           IDDEFGEDALLGRLEGMKDVIE+VNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF
Sbjct: 187 IDDEFGEDALLGRLEGMKDVIEQVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 246

Query: 252 EIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGI 311
           EIDTHNIIINQV+YD+EDVESKLL+ARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTG+
Sbjct: 247 EIDTHNIIINQVIYDEEDVESKLLKARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGV 306

Query: 312 EALKAFSQHFVTPYQPSTSRDTVEDLERRVSTLRQQLQEAEAELERLRKGKQVA 365
           E+LKAFS HFVT YQPSTS+ TVE+LE+++STLR++L +AEAELE+L+KGKQ+A
Sbjct: 307 ESLKAFSSHFVTAYQPSTSKVTVEELEQKISTLRKRLTDAEAELEKLQKGKQLA 360

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127550|ref|XP_002320102.1| predicted protein [Populus trichocarpa] gi|222860875|gb|EEE98417.1| predicted protein [Populus trichocarpa]

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 304/352 (86%), Positives = 336/352 (95%), Gaps = 1/352 (0%)

Query: 13  EIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD 72
           +IPEG+VRNILEQD+LKWVFVGGKGGVGKTTCSSILSILLA+VR SVLIISTDPAHNLSD
Sbjct: 5   DIPEGTVRNILEQDTLKWVFVGGKGGVGKTTCSSILSILLAQVRSSVLIISTDPAHNLSD 64

Query: 73  AFQQRFTKTPTLVNGFSNLYAMEVDPSVE-EETGSTEGMDSLFSELANAIPGIDEAMSFA 131
            FQQRFTKTPTLVNGFSNLYAMEVDP+VE ++ G  EGMDSLFSEL+NAIPGIDEAMSFA
Sbjct: 65  VFQQRFTKTPTLVNGFSNLYAMEVDPNVENDDIGGNEGMDSLFSELSNAIPGIDEAMSFA 124

Query: 132 EMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG 191
           EMLKLVQTM YSCIVFDTAPTGHTLRLLQ PSTLEKGL K+MSLK+KFGG+I+QMTRLFG
Sbjct: 125 EMLKLVQTMGYSCIVFDTAPTGHTLRLLQLPSTLEKGLQKVMSLKSKFGGLISQMTRLFG 184

Query: 192 IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 251
           +DDEFGEDA+LGRLE MKDVIE+VNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL K 
Sbjct: 185 LDDEFGEDAILGRLESMKDVIEKVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELAKV 244

Query: 252 EIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGI 311
           EIDTHNIIINQVLYD+EDVESKLL+ARMRMQ+KYLDQFYMLYDDF+ITKLPLLP+EVTG+
Sbjct: 245 EIDTHNIIINQVLYDEEDVESKLLKARMRMQKKYLDQFYMLYDDFNITKLPLLPQEVTGV 304

Query: 312 EALKAFSQHFVTPYQPSTSRDTVEDLERRVSTLRQQLQEAEAELERLRKGKQ 363
           E+LKAFS++F++PYQPSTSR TVED+ERR+STL+ QL++ EAEL+R RKGKQ
Sbjct: 305 ESLKAFSRNFISPYQPSTSRGTVEDVERRISTLKLQLEDTEAELDRHRKGKQ 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454494|ref|XP_004144989.1| PREDICTED: ATPase ASNA1 homolog [Cucumis sativus] gi|449472679|ref|XP_004153666.1| PREDICTED: ATPase ASNA1 homolog [Cucumis sativus]

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 303/354 (85%), Positives = 337/354 (95%), Gaps = 3/354 (0%)

Query: 13  EIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD 72
           E+PEG+VRN+L+Q+SLKWVFVGGKGGVGKTTCSSILSILL+ VR SVLIISTDPAHNLSD
Sbjct: 4   ELPEGTVRNLLDQESLKWVFVGGKGGVGKTTCSSILSILLSRVRSSVLIISTDPAHNLSD 63

Query: 73  AFQQRFTKTPTLVNGFSNLYAMEVDPSVE-EETGSTEGMDSLFSELANAIPGIDEAMSFA 131
           AFQQRFTK PTLVNGFSNLYAMEVDP+VE EE G  EGMD LFSELANAIPGIDEAMSFA
Sbjct: 64  AFQQRFTKAPTLVNGFSNLYAMEVDPTVENEEVG--EGMDGLFSELANAIPGIDEAMSFA 121

Query: 132 EMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG 191
           EMLKLVQTMDYS IVFDTAPTGHTLRLLQFPSTLEKGL K+MSLK+KFGG++ QMTR+FG
Sbjct: 122 EMLKLVQTMDYSVIVFDTAPTGHTLRLLQFPSTLEKGLSKIMSLKSKFGGLLGQMTRMFG 181

Query: 192 IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 251
           +DDEFGEDA+LGRLEGM+DVIE+VN+QFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF
Sbjct: 182 VDDEFGEDAILGRLEGMRDVIEQVNRQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 241

Query: 252 EIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGI 311
           EIDTHNIIINQVL+D+EDVESKLL+ARMRMQQKYLDQFYMLYDDFHITKLPLLP+EVTG+
Sbjct: 242 EIDTHNIIINQVLFDEEDVESKLLKARMRMQQKYLDQFYMLYDDFHITKLPLLPQEVTGV 301

Query: 312 EALKAFSQHFVTPYQPSTSRDTVEDLERRVSTLRQQLQEAEAELERLRKGKQVA 365
           EALK FS HF +PY+P+TSRD++E+LER++STL+QQL +AE EL+R+RKGKQ A
Sbjct: 302 EALKDFSGHFSSPYEPTTSRDSIEELERKISTLKQQLNDAETELDRIRKGKQKA 355

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089136|emb|CBI38839.3| unnamed protein product [Vitis vinifera]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 307/355 (86%), Positives = 330/355 (92%), Gaps = 3/355 (0%)

Query: 9   DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
           DQEL    G+V+NIL+Q+SLKWVFVGGKGGVGKTTCSSILSILL+ VR SVLIISTDPAH
Sbjct: 4   DQELS---GTVQNILDQESLKWVFVGGKGGVGKTTCSSILSILLSRVRSSVLIISTDPAH 60

Query: 69  NLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAM 128
           NLSDAFQQRFTK PTLVNGFSNLYAMEVDPSVE E    +GMD+LFSELANAIPGIDEAM
Sbjct: 61  NLSDAFQQRFTKAPTLVNGFSNLYAMEVDPSVENEELPGDGMDNLFSELANAIPGIDEAM 120

Query: 129 SFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188
           SFAEMLKLVQTMDYS IVFDTAPTGHTLRLLQFPSTLEKGL KMMSLKNKFGG++NQMTR
Sbjct: 121 SFAEMLKLVQTMDYSVIVFDTAPTGHTLRLLQFPSTLEKGLAKMMSLKNKFGGLLNQMTR 180

Query: 189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248
           LFG+DDEFGEDALLGRLEGMKDVIE+VNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL
Sbjct: 181 LFGVDDEFGEDALLGRLEGMKDVIEQVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 240

Query: 249 TKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEV 308
            KFEID+HN+IINQVLYD+E VESKLL+ARMRMQQKYLDQFYMLYDDFHITKLPLLPEEV
Sbjct: 241 NKFEIDSHNVIINQVLYDEEVVESKLLKARMRMQQKYLDQFYMLYDDFHITKLPLLPEEV 300

Query: 309 TGIEALKAFSQHFVTPYQPSTSRDTVEDLERRVSTLRQQLQEAEAELERLRKGKQ 363
            G+EALKAFS +F+TPYQP   + T+E+LE RVS L+QQL +AEAELERLRKGKQ
Sbjct: 301 CGVEALKAFSHNFITPYQPVIEKGTMEELEARVSMLKQQLTDAEAELERLRKGKQ 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489404|ref|XP_002278613.2| PREDICTED: ATPase ASNA1 homolog [Vitis vinifera]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 307/355 (86%), Positives = 330/355 (92%), Gaps = 3/355 (0%)

Query: 9   DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
           DQEL    G+V+NIL+Q+SLKWVFVGGKGGVGKTTCSSILSILL+ VR SVLIISTDPAH
Sbjct: 4   DQELS---GTVQNILDQESLKWVFVGGKGGVGKTTCSSILSILLSRVRSSVLIISTDPAH 60

Query: 69  NLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAM 128
           NLSDAFQQRFTK PTLVNGFSNLYAMEVDPSVE E    +GMD+LFSELANAIPGIDEAM
Sbjct: 61  NLSDAFQQRFTKAPTLVNGFSNLYAMEVDPSVENEELPGDGMDNLFSELANAIPGIDEAM 120

Query: 129 SFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188
           SFAEMLKLVQTMDYS IVFDTAPTGHTLRLLQFPSTLEKGL KMMSLKNKFGG++NQMTR
Sbjct: 121 SFAEMLKLVQTMDYSVIVFDTAPTGHTLRLLQFPSTLEKGLAKMMSLKNKFGGLLNQMTR 180

Query: 189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248
           LFG+DDEFGEDALLGRLEGMKDVIE+VNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL
Sbjct: 181 LFGVDDEFGEDALLGRLEGMKDVIEQVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 240

Query: 249 TKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEV 308
            KFEID+HN+IINQVLYD+E VESKLL+ARMRMQQKYLDQFYMLYDDFHITKLPLLPEEV
Sbjct: 241 NKFEIDSHNVIINQVLYDEEVVESKLLKARMRMQQKYLDQFYMLYDDFHITKLPLLPEEV 300

Query: 309 TGIEALKAFSQHFVTPYQPSTSRDTVEDLERRVSTLRQQLQEAEAELERLRKGKQ 363
            G+EALKAFS +F+TPYQP   + T+E+LE RVS L+QQL +AEAELERLRKGKQ
Sbjct: 301 CGVEALKAFSHNFITPYQPVIEKGTMEELEARVSMLKQQLTDAEAELERLRKGKQ 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510106|gb|AFK43119.1| unknown [Lotus japonicus]

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 298/351 (84%), Positives = 327/351 (93%), Gaps = 1/351 (0%)

Query: 16  EGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
           EG+V+N+LEQ+SLKWVFVGGKGGVGKTTCSSILSILLA VR SVLIISTDPAHNLSDAFQ
Sbjct: 6   EGTVQNVLEQESLKWVFVGGKGGVGKTTCSSILSILLASVRSSVLIISTDPAHNLSDAFQ 65

Query: 76  QRFTKTPTLVNGFSNLYAMEVDPSVE-EETGSTEGMDSLFSELANAIPGIDEAMSFAEML 134
           QRFTKTPTLVNGFSNLYAMEVDP+VE E+ GS++GMDSL SELA AIPGIDEAMSFAEML
Sbjct: 66  QRFTKTPTLVNGFSNLYAMEVDPAVEHEDMGSSDGMDSLVSELAGAIPGIDEAMSFAEML 125

Query: 135 KLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDD 194
           KLVQTMDYS IVFDTAPT HTLRLLQ PS LEKGL KMMSLKNKFGG+ NQMTR+FG+ D
Sbjct: 126 KLVQTMDYSVIVFDTAPTDHTLRLLQLPSVLEKGLAKMMSLKNKFGGLFNQMTRMFGMGD 185

Query: 195 EFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEID 254
           +FGEDA+LG+LEGMKDVIE+VNKQFKDPD+TT VCVCIPEFLSLYETERLVQELTKFEID
Sbjct: 186 DFGEDAILGKLEGMKDVIEQVNKQFKDPDMTTSVCVCIPEFLSLYETERLVQELTKFEID 245

Query: 255 THNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEAL 314
           THNIIINQV++DDEDVESKLL+ARM+MQQKYLDQFYMLYDDF+ITKLPLLPEEVTG+EAL
Sbjct: 246 THNIIINQVIFDDEDVESKLLKARMKMQQKYLDQFYMLYDDFNITKLPLLPEEVTGVEAL 305

Query: 315 KAFSQHFVTPYQPSTSRDTVEDLERRVSTLRQQLQEAEAELERLRKGKQVA 365
           KAFS+HF TPYQP  SRD VE LE+RVS L+ QL+EAE ELER+++GK  A
Sbjct: 306 KAFSRHFTTPYQPLASRDQVERLEQRVSGLQHQLKEAEEELERVKRGKHRA 356

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18378897|ref|NP_563640.1| putative anion-transporting ATPase [Arabidopsis thaliana] gi|30678203|ref|NP_849575.1| putative anion-transporting ATPase [Arabidopsis thaliana] gi|145323712|ref|NP_001077445.1| putative anion-transporting ATPase [Arabidopsis thaliana] gi|15293141|gb|AAK93681.1| putative arsA homolog hASNA-I [Arabidopsis thaliana] gi|21689765|gb|AAM67526.1| putative arsA-like protein hASNA-I [Arabidopsis thaliana] gi|332189227|gb|AEE27348.1| putative anion-transporting ATPase [Arabidopsis thaliana] gi|332189228|gb|AEE27349.1| putative anion-transporting ATPase [Arabidopsis thaliana] gi|332189230|gb|AEE27351.1| putative anion-transporting ATPase [Arabidopsis thaliana]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 288/350 (82%), Positives = 326/350 (93%), Gaps = 1/350 (0%)

Query: 13  EIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD 72
           ++PE +V+NIL+Q+SLKWVFVGGKGGVGKTTCSSIL+I LA VR SVLIISTDPAHNLSD
Sbjct: 4   DLPEATVQNILDQESLKWVFVGGKGGVGKTTCSSILAICLASVRSSVLIISTDPAHNLSD 63

Query: 73  AFQQRFTKTPTLVNGFSNLYAMEVDPSVE-EETGSTEGMDSLFSELANAIPGIDEAMSFA 131
           AFQQRFTK+PTLV GFSNL+AMEVDP+VE ++   T+GMD LFS+LANAIPGIDEAMSFA
Sbjct: 64  AFQQRFTKSPTLVQGFSNLFAMEVDPTVETDDMAGTDGMDGLFSDLANAIPGIDEAMSFA 123

Query: 132 EMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG 191
           EMLKLVQTMDY+ IVFDTAPTGHTLRLLQFP+TLEKGL K+MSLK++FGG++ QM+R+FG
Sbjct: 124 EMLKLVQTMDYATIVFDTAPTGHTLRLLQFPATLEKGLSKLMSLKSRFGGLMTQMSRMFG 183

Query: 192 IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 251
           ++DEFGEDALLGRLEG+KDVIE+VN+QFKDPD+TTFVCVCIPEFLSLYETERLVQEL KF
Sbjct: 184 MEDEFGEDALLGRLEGLKDVIEQVNRQFKDPDMTTFVCVCIPEFLSLYETERLVQELAKF 243

Query: 252 EIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGI 311
           EIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDF+ITKLPLLPEEVTG+
Sbjct: 244 EIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFNITKLPLLPEEVTGV 303

Query: 312 EALKAFSQHFVTPYQPSTSRDTVEDLERRVSTLRQQLQEAEAELERLRKG 361
           EALKAFS  F+TPY P+TSR  VE+LER+V TLR QL+ AE ELER++ G
Sbjct: 304 EALKAFSHKFLTPYHPTTSRSNVEELERKVHTLRLQLKTAEEELERVKSG 353

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842932|ref|XP_002889347.1| hypothetical protein ARALYDRAFT_470088 [Arabidopsis lyrata subsp. lyrata] gi|297335189|gb|EFH65606.1| hypothetical protein ARALYDRAFT_470088 [Arabidopsis lyrata subsp. lyrata]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 287/350 (82%), Positives = 325/350 (92%), Gaps = 1/350 (0%)

Query: 13  EIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD 72
           ++PE +++NIL+Q+SLKWVFVGGKGGVGKTTCSSIL+I LA VR SVLIISTDPAHNLSD
Sbjct: 4   DLPEATLQNILDQESLKWVFVGGKGGVGKTTCSSILAICLASVRSSVLIISTDPAHNLSD 63

Query: 73  AFQQRFTKTPTLVNGFSNLYAMEVDPSVE-EETGSTEGMDSLFSELANAIPGIDEAMSFA 131
           AFQQRFTK+PTLV GFSNL+AMEVDP+VE ++    +GMD LFS+LANAIPGIDEAMSFA
Sbjct: 64  AFQQRFTKSPTLVQGFSNLFAMEVDPTVETDDLAGADGMDGLFSDLANAIPGIDEAMSFA 123

Query: 132 EMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG 191
           EMLKLVQTMDY+ IVFDTAPTGHTLRLLQFP+TLEKGL K+MSLK++FGG++ QM+R+FG
Sbjct: 124 EMLKLVQTMDYATIVFDTAPTGHTLRLLQFPATLEKGLSKLMSLKSRFGGLMTQMSRMFG 183

Query: 192 IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 251
           I+DEFGEDALLGRLEG+KDVIE+VN+QFKDPD+TTFVCVCIPEFLSLYETERLVQEL KF
Sbjct: 184 IEDEFGEDALLGRLEGLKDVIEQVNRQFKDPDMTTFVCVCIPEFLSLYETERLVQELAKF 243

Query: 252 EIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGI 311
           EIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDF+ITKLPLLPEEVTG+
Sbjct: 244 EIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFNITKLPLLPEEVTGV 303

Query: 312 EALKAFSQHFVTPYQPSTSRDTVEDLERRVSTLRQQLQEAEAELERLRKG 361
           EALKAFS  F+TPY P+TSR  VE+LER+V TLR QL+ AE ELER++ G
Sbjct: 304 EALKAFSHKFLTPYHPTTSRSNVEELERKVHTLRLQLKTAEEELERVKSG 353

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071738|gb|ACJ84229.1| unknown [Medicago truncatula]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 289/350 (82%), Positives = 327/350 (93%), Gaps = 1/350 (0%)

Query: 14  IPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA 73
           +PEG+++NILEQ++LKWVFVGGKGGVGKTTCSSILSILLA VR SVLIISTDPAHNLSDA
Sbjct: 6   LPEGTLQNILEQETLKWVFVGGKGGVGKTTCSSILSILLASVRSSVLIISTDPAHNLSDA 65

Query: 74  FQQRFTKTPTLVNGFSNLYAMEVDPSVE-EETGSTEGMDSLFSELANAIPGIDEAMSFAE 132
           FQQRFTKTPTLVNGFSNLYAMEVDP+VE E+  S++GMD+LF+ELA AIPGIDEAMSFAE
Sbjct: 66  FQQRFTKTPTLVNGFSNLYAMEVDPTVEHEDMSSSDGMDNLFNELAGAIPGIDEAMSFAE 125

Query: 133 MLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGI 192
           MLKLVQTMDYS IVFDTAPTGHTLRLLQFPS LEKGL K+MSLKNKFGG+ +QMTR+FG 
Sbjct: 126 MLKLVQTMDYSVIVFDTAPTGHTLRLLQFPSVLEKGLAKVMSLKNKFGGLFSQMTRMFGT 185

Query: 193 DDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE 252
            D+FGEDA+LG+LEGMKDVIE+VN QFKDPD+TTFVCVCIPEFLSLYETERLVQELTKFE
Sbjct: 186 GDDFGEDAILGKLEGMKDVIEQVNMQFKDPDMTTFVCVCIPEFLSLYETERLVQELTKFE 245

Query: 253 IDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIE 312
           IDTHNIIINQV++DDEDVESKLL+ARM+MQQKYLDQFYMLYDDF+ITKLPLLP+EVTG+E
Sbjct: 246 IDTHNIIINQVIFDDEDVESKLLKARMKMQQKYLDQFYMLYDDFNITKLPLLPQEVTGVE 305

Query: 313 ALKAFSQHFVTPYQPSTSRDTVEDLERRVSTLRQQLQEAEAELERLRKGK 362
           AL++FS+HF TPY+   S+D VE LE RV+ L+QQL+EAE ELER++ GK
Sbjct: 306 ALRSFSRHFKTPYESICSKDQVERLENRVTALQQQLKEAEEELERVKTGK 355

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:2025467	353	AT1G01910 [Arabidopsis thalian	0.906	0.937	0.801	2.9e-142
FB|FBgn0033191	336	CG1598 [Drosophila melanogaste	0.863	0.937	0.535	2.3e-87
DICTYBASE|DDB_G0293528	329	arsA "arsenite-translocating A	0.852	0.945	0.520	1.1e-85
ZFIN|ZDB-GENE-040625-120	341	asna1 "arsA arsenite transport	0.852	0.912	0.520	3.8e-85
POMBASE|SPAC1142.06	329	get3 "GET complex ATPase subun	0.852	0.945	0.524	5.6e-84
UNIPROTKB|A5PJI5	348	ASNA1 "ATPase ASNA1" [Bos taur	0.863	0.905	0.507	1.2e-83
UNIPROTKB|O43681	348	ASNA1 "ATPase ASNA1" [Homo sap	0.863	0.905	0.507	1.2e-83
UNIPROTKB|F2Z5J4	348	ASNA1 "Uncharacterized protein	0.863	0.905	0.507	1.2e-83
MGI|MGI:1928379	348	Asna1 "arsA arsenite transport	0.863	0.905	0.507	1.2e-83
UNIPROTKB|G3V9T7	348	Asna1 "ArsA arsenite transport	0.863	0.905	0.507	1.2e-83

TAIR|locus:2025467 AT1G01910 [Arabidopsis thaliana (taxid:3702)]

 Score = 1391 (494.7 bits), Expect = 2.9e-142, P = 2.9e-142
 Identities = 266/332 (80%), Positives = 301/332 (90%)

Query:    13 EIPEGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSD 72
             ++PE +V+NIL+Q+SLKWVF           CSSIL+I LA VR SVLIISTDPAHNLSD
Sbjct:     4 DLPEATVQNILDQESLKWVFVGGKGGVGKTTCSSILAICLASVRSSVLIISTDPAHNLSD 63

Query:    73 AFQQRFTKTPTLVNGFSNLYAMEVDPSVE-EETGSTEGMDSLFSELANAIPGIDEAMSFA 131
             AFQQRFTK+PTLV GFSNL+AMEVDP+VE ++   T+GMD LFS+LANAIPGIDEAMSFA
Sbjct:    64 AFQQRFTKSPTLVQGFSNLFAMEVDPTVETDDMAGTDGMDGLFSDLANAIPGIDEAMSFA 123

Query:   132 EMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG 191
             EMLKLVQTMDY+ IVFDTAPTGHTLRLLQFP+TLEKGL K+MSLK++FGG++ QM+R+FG
Sbjct:   124 EMLKLVQTMDYATIVFDTAPTGHTLRLLQFPATLEKGLSKLMSLKSRFGGLMTQMSRMFG 183

Query:   192 IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 251
             ++DEFGEDALLGRLEG+KDVIE+VN+QFKDPD+TTFVCVCIPEFLSLYETERLVQEL KF
Sbjct:   184 MEDEFGEDALLGRLEGLKDVIEQVNRQFKDPDMTTFVCVCIPEFLSLYETERLVQELAKF 243

Query:   252 EIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGI 311
             EIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDF+ITKLPLLPEEVTG+
Sbjct:   244 EIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFNITKLPLLPEEVTGV 303

Query:   312 EALKAFSQHFVTPYQPSTSRDTVEDLERRVST 343
             EALKAFS  F+TPY P+TSR  VE+LER+V T
Sbjct:   304 EALKAFSHKFLTPYHPTTSRSNVEELERKVHT 335

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0016887 "ATPase activity" evidence=IEA

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

FB|FBgn0033191 CG1598 [Drosophila melanogaster (taxid:7227)]

 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 175/327 (53%), Positives = 234/327 (71%)

Query:    12 LEIPEGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLS 71
             LE  E S++N++EQDSLKW+F           CSS L++ L++VR SVLIISTDPAHN+S
Sbjct:     5 LEPLEPSLQNLVEQDSLKWIFVGGKGGVGKTTCSSSLAVQLSKVRESVLIISTDPAHNIS 64

Query:    72 DAFQQRFTKTPTLVNGFSNLYAMEVDPS-----VEEE--TGSTEGM---DSLFSELANAI 121
             DAF Q+FTK PT VNGF NL+AME+DP+     + EE   G  E +     +  E+ NA+
Sbjct:    65 DAFDQKFTKVPTKVNGFDNLFAMEIDPNAGLNELPEEYFDGENEALRVSKGVMQEMINAL 124

Query:   122 PGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG 181
             PGIDEAMS+AE++KLV+ M++S +VFDTAPTGHTLRL+ FP  +EKGL K++ LK K   
Sbjct:   125 PGIDEAMSYAEVMKLVKGMNFSVVVFDTAPTGHTLRLIAFPQVVEKGLGKLLRLKMKVAP 184

Query:   182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYET 241
             +++Q   + G+ D    D L  +L+ M  VI +VN+QFK+PD TTFVCVCI EF SLYET
Sbjct:   185 LLSQFVSMLGMAD-VNADTLSQKLDDMLRVITQVNEQFKNPDQTTFVCVCIAEFFSLYET 243

Query:   242 ERLVQELTKFEIDTHNIIINQVLYDDEDVES-KLLRARMRMQQKYLDQFYMLYDDFHITK 300
             ERLVQELTK  ID HNII+NQ+L+     +S  +  +R ++Q+KYLDQ   LY+DFH+TK
Sbjct:   244 ERLVQELTKCGIDVHNIIVNQLLFLQNSHDSCSMCASRFKIQEKYLDQIADLYEDFHVTK 303

Query:   301 LPLLPEEVTGIEALKAFSQHFVTPYQP 327
             LPLL +EV G E++++FS++ + PY P
Sbjct:   304 LPLLEKEVRGPESIRSFSENLMKPYNP 330

GO:0015446 "arsenite-transmembrane transporting ATPase activity" evidence=ISS

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

DICTYBASE|DDB_G0293528 arsA "arsenite-translocating ATPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 165/317 (52%), Positives = 229/317 (72%)

Query:    16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
             E ++ NI+  + LKW+F            S  ++I L++V+ SVL+ISTDPAHNLSDAF 
Sbjct:     7 EPTIENIINSEKLKWIFVGGKGGVGKTTTSCSVAIQLSKVKESVLLISTDPAHNLSDAFG 66

Query:    76 QRFTKTPTLVNGFSNLYAMEVDPSVEE---ETGSTEGMDSLFSELANAIPGIDEAMSFAE 132
             Q+FTK+PTLV GF+NL+AME+DP+ ++   E   T+       E   AIPGIDEAMSFAE
Sbjct:    67 QKFTKSPTLVEGFTNLFAMEIDPTPDQLAPEFMETQSDGFNLQEFTAAIPGIDEAMSFAE 126

Query:   133 MLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGI 192
             ++KLV+++++S +VFDTAPTGHTLRLL  PS L+KG++K +S++  F G+ N ++ + G 
Sbjct:   127 VMKLVKSLEFSVVVFDTAPTGHTLRLLSIPSLLDKGINKFLSMQQNFSGIFNAVSGMMGG 186

Query:   193 DDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE 252
             +    E+ + G+++  K VIE +N QFK+PDLTTF+ VCIPEFLS+YETERL+Q+LTK +
Sbjct:   187 NAPSLEN-MEGKIQSTKKVIEEINIQFKNPDLTTFIPVCIPEFLSVYETERLIQQLTKLD 245

Query:   253 IDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIE 312
             ID HN+I+NQ++Y ++D    L  AR +MQ+KYLDQ   LY DFH+TKLPLL  EV G+ 
Sbjct:   246 IDVHNVIVNQIVYPEKDCS--LCNARQKMQKKYLDQIADLYFDFHVTKLPLLKAEVRGVP 303

Query:   313 ALKAFSQHFVTPYQPST 329
             +LK FS+  + PY PST
Sbjct:   304 SLKLFSELLIKPYDPST 320

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0019898 "extrinsic to membrane" evidence=ISS

GO:0006810 "transport" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0015105 "arsenite transmembrane transporter activity" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-040625-120 asna1 "arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)" [Danio rerio (taxid:7955)]

 Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
 Identities = 167/321 (52%), Positives = 222/321 (69%)

Query:    16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
             E +++NI+EQ SLKW+F           CS  L++ LA VR SVLIISTDPAHN+SDAF 
Sbjct:    19 EPTLKNIIEQKSLKWIFVGGKGGVGKTTCSCSLAVQLAAVRESVLIISTDPAHNISDAFD 78

Query:    76 QRFTKTPTLVNGFSNLYAMEVDPSV-----EEETGSTEGMDSL----FSELANAIPGIDE 126
             Q+F+K PT V G+ NL+AME+DPS+      +E    + M S+      E  +A PGIDE
Sbjct:    79 QKFSKVPTKVKGYDNLFAMEIDPSLGVAELPDEFFEEDNMLSMGKKMMQEAMSAFPGIDE 138

Query:   127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
             AMS+AE+++LV+ M++S +VFDTAPTGHTLRLL FP+ +E+GL ++M +KN+    I+QM
Sbjct:   139 AMSYAEVMRLVKGMNFSVVVFDTAPTGHTLRLLNFPTIVERGLGRLMQIKNQISPFISQM 198

Query:   187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246
               + G+ D    D L  +LE    VI  V++QFKDP+ TTF+CVCI EFLSLYETERL+Q
Sbjct:   199 CNMLGLGD-MNADQLASKLEETLPVIRSVSEQFKDPEQTTFICVCIAEFLSLYETERLIQ 257

Query:   247 ELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPE 306
             EL K  IDTHNII+NQ+++ D +   K+  AR ++Q KYLDQ   LY+DFHI KLPLLP 
Sbjct:   258 ELAKCRIDTHNIIVNQLVFPDNERPCKMCEARHKIQSKYLDQMEDLYEDFHIVKLPLLPH 317

Query:   307 EVTGIEALKAFSQHFVTPYQP 327
             EV G + +  FS+  + PY P
Sbjct:   318 EVRGADKVNTFSKQLLEPYSP 338

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

POMBASE|SPAC1142.06 get3 "GET complex ATPase subunit Get3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
 Identities = 169/322 (52%), Positives = 222/322 (68%)

Query:    17 GSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76
             G++ N+LEQ SLKW+F            S  L+I +++VR SVL+ISTDPAHNLSDAF  
Sbjct:     8 GTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGT 67

Query:    77 RFTKTPTLVNGFSNLYAMEVDP--SVEEETGSTEG------MDSLFSELANAIPGIDEAM 128
             +F K    V GF NL AME+DP  S++E T   +       +  +  +LA  IPGIDEA+
Sbjct:    68 KFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQADQQNPNNPLSGMMQDLAFTIPGIDEAL 127

Query:   129 SFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188
             +FAE+LK +++M++ C++FDTAPTGHTLR L FP+ LEK L K+  L ++FG MINQM  
Sbjct:   128 AFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMINQMGS 187

Query:   189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248
             + G++    E  L G++E M+  I  VNKQFK+PDLTTFVCVCI EFLSLYETER++QEL
Sbjct:   188 IMGVNAN--EQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQEL 245

Query:   249 TKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEV 308
             T +EIDTHNI++NQ+L D      + + AR +MQQKYL Q   LY+DFH+ K+P +P EV
Sbjct:   246 TSYEIDTHNIVVNQLLLDPNTTCPQCM-ARRKMQQKYLAQIEELYEDFHVVKVPQVPAEV 304

Query:   309 TGIEALKAFSQHFVTPYQPSTS 330
              G EALK+FS+  V PY   TS
Sbjct:   305 RGTEALKSFSEMLVKPYVYPTS 326

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006875 "cellular metal ion homeostasis" evidence=IC

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISO

GO:0016887 "ATPase activity" evidence=ISM

GO:0043529 "GET complex" evidence=ISO

GO:0045048 "protein insertion into ER membrane" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0071248 "cellular response to metal ion" evidence=ISO

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA

UNIPROTKB|A5PJI5 ASNA1 "ATPase ASNA1" [Bos taurus (taxid:9913)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 165/325 (50%), Positives = 225/325 (69%)

Query:    16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
             E ++ NI+EQ SLKW+F           CS  L++ L++ R SVLIISTDPAHN+SDAF 
Sbjct:    25 EPTLSNIIEQRSLKWIFVGGKGGVGKTTCSCSLAVQLSKGRESVLIISTDPAHNISDAFD 84

Query:    76 QRFTKTPTLVNGFSNLYAMEVDPSV-----EEETGSTEGMDSL----FSELANAIPGIDE 126
             Q+F+K PT V G+ NL+AME+DPS+      +E    + M S+      E  +A PGIDE
Sbjct:    85 QKFSKVPTKVKGYDNLFAMEIDPSLGVAELPDEFFEEDNMLSMGKKMMQEAMSAFPGIDE 144

Query:   127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
             AMS+AE+++LV+ M++S +VFDTAPTGHTLRLL FP+ +E+GL ++M +KN+    I+QM
Sbjct:   145 AMSYAEVMRLVKGMNFSVVVFDTAPTGHTLRLLNFPTIVERGLGRLMQIKNQISPFISQM 204

Query:   187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246
               + G+ D    D L  +LE    VI  V++QFKDP+ TTF+CVCI EFLSLYETERL+Q
Sbjct:   205 CNMLGLGD-MNADQLASKLEETLPVIRSVSEQFKDPEQTTFICVCIAEFLSLYETERLIQ 263

Query:   247 ELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPE 306
             EL K +IDTHNII+NQ+++ D +   K+  AR ++Q KYLDQ   LY+DFHI KLPLLP 
Sbjct:   264 ELAKCKIDTHNIIVNQLVFPDPEKPCKMCEARHKIQAKYLDQMEDLYEDFHIVKLPLLPH 323

Query:   307 EVTGIEALKAFSQHFVTPYQPSTSR 331
             EV G + +  FS   + PY+P +++
Sbjct:   324 EVRGADKVNTFSALLLEPYKPPSAQ 348

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|O43681 ASNA1 "ATPase ASNA1" [Homo sapiens (taxid:9606)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 165/325 (50%), Positives = 225/325 (69%)

Query:    16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
             E ++ NI+EQ SLKW+F           CS  L++ L++ R SVLIISTDPAHN+SDAF 
Sbjct:    25 EPTLSNIIEQRSLKWIFVGGKGGVGKTTCSCSLAVQLSKGRESVLIISTDPAHNISDAFD 84

Query:    76 QRFTKTPTLVNGFSNLYAMEVDPSV-----EEETGSTEGMDSL----FSELANAIPGIDE 126
             Q+F+K PT V G+ NL+AME+DPS+      +E    + M S+      E  +A PGIDE
Sbjct:    85 QKFSKVPTKVKGYDNLFAMEIDPSLGVAELPDEFFEEDNMLSMGKKMMQEAMSAFPGIDE 144

Query:   127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
             AMS+AE+++LV+ M++S +VFDTAPTGHTLRLL FP+ +E+GL ++M +KN+    I+QM
Sbjct:   145 AMSYAEVMRLVKGMNFSVVVFDTAPTGHTLRLLNFPTIVERGLGRLMQIKNQISPFISQM 204

Query:   187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246
               + G+ D    D L  +LE    VI  V++QFKDP+ TTF+CVCI EFLSLYETERL+Q
Sbjct:   205 CNMLGLGD-MNADQLASKLEETLPVIRSVSEQFKDPEQTTFICVCIAEFLSLYETERLIQ 263

Query:   247 ELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPE 306
             EL K +IDTHNII+NQ+++ D +   K+  AR ++Q KYLDQ   LY+DFHI KLPLLP 
Sbjct:   264 ELAKCKIDTHNIIVNQLVFPDPEKPCKMCEARHKIQAKYLDQMEDLYEDFHIVKLPLLPH 323

Query:   307 EVTGIEALKAFSQHFVTPYQPSTSR 331
             EV G + +  FS   + PY+P +++
Sbjct:   324 EVRGADKVNTFSALLLEPYKPPSAQ 348

GO:0016887 "ATPase activity" evidence=IEA

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005215 "transporter activity" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0006810 "transport" evidence=TAS

GO:0015105 "arsenite transmembrane transporter activity" evidence=TAS

UNIPROTKB|F2Z5J4 ASNA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 165/325 (50%), Positives = 225/325 (69%)

Query:    16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
             E ++ NI+EQ SLKW+F           CS  L++ L++ R SVLIISTDPAHN+SDAF 
Sbjct:    25 EPTLSNIIEQRSLKWIFVGGKGGVGKTTCSCSLAVQLSKGRESVLIISTDPAHNISDAFD 84

Query:    76 QRFTKTPTLVNGFSNLYAMEVDPSV-----EEETGSTEGMDSL----FSELANAIPGIDE 126
             Q+F+K PT V G+ NL+AME+DPS+      +E    + M S+      E  +A PGIDE
Sbjct:    85 QKFSKVPTKVKGYDNLFAMEIDPSLGVAELPDEFFEEDNMLSMGKKMMQEAMSAFPGIDE 144

Query:   127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
             AMS+AE+++LV+ M++S +VFDTAPTGHTLRLL FP+ +E+GL ++M +KN+    I+QM
Sbjct:   145 AMSYAEVMRLVKGMNFSVVVFDTAPTGHTLRLLNFPTIVERGLGRLMQIKNQISPFISQM 204

Query:   187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246
               + G+ D    D L  +LE    VI  V++QFKDP+ TTF+CVCI EFLSLYETERL+Q
Sbjct:   205 CNMLGLGD-MNADQLASKLEETLPVIRSVSEQFKDPEQTTFICVCIAEFLSLYETERLIQ 263

Query:   247 ELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPE 306
             EL K +IDTHNII+NQ+++ D +   K+  AR ++Q KYLDQ   LY+DFHI KLPLLP 
Sbjct:   264 ELAKCKIDTHNIIVNQLVFPDPEKPCKMCEARHKIQAKYLDQMEDLYEDFHIVKLPLLPH 323

Query:   307 EVTGIEALKAFSQHFVTPYQPSTSR 331
             EV G + +  FS   + PY+P +++
Sbjct:   324 EVRGADKVNTFSALLLEPYKPPSAQ 348

GO:0005524 "ATP binding" evidence=IEA

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

MGI|MGI:1928379 Asna1 "arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)" [Mus musculus (taxid:10090)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 165/325 (50%), Positives = 225/325 (69%)

Query:    16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
             E ++ NI+EQ SLKW+F           CS  L++ L++ R SVLIISTDPAHN+SDAF 
Sbjct:    25 EPTLSNIIEQRSLKWIFVGGKGGVGKTTCSCSLAVQLSKGRESVLIISTDPAHNISDAFD 84

Query:    76 QRFTKTPTLVNGFSNLYAMEVDPSV-----EEETGSTEGMDSL----FSELANAIPGIDE 126
             Q+F+K PT V G+ NL+AME+DPS+      +E    + M S+      E  +A PGIDE
Sbjct:    85 QKFSKVPTKVKGYDNLFAMEIDPSLGVAELPDEFFEEDNMLSMGKKMMQEAMSAFPGIDE 144

Query:   127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
             AMS+AE+++LV+ M++S +VFDTAPTGHTLRLL FP+ +E+GL ++M +KN+    I+QM
Sbjct:   145 AMSYAEVMRLVKGMNFSVVVFDTAPTGHTLRLLNFPTIVERGLGRLMQIKNQISPFISQM 204

Query:   187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246
               + G+ D    D L  +LE    VI  V++QFKDP+ TTF+CVCI EFLSLYETERL+Q
Sbjct:   205 CNMLGLGD-MNADQLASKLEETLPVIRSVSEQFKDPEQTTFICVCIAEFLSLYETERLIQ 263

Query:   247 ELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPE 306
             EL K +IDTHNII+NQ+++ D +   K+  AR ++Q KYLDQ   LY+DFHI KLPLLP 
Sbjct:   264 ELAKCKIDTHNIIVNQLVFPDPEKPCKMCEARHKIQAKYLDQMEDLYEDFHIVKLPLLPH 323

Query:   307 EVTGIEALKAFSQHFVTPYQPSTSR 331
             EV G + +  FS   + PY+P +++
Sbjct:   324 EVRGADKVNTFSALLLEPYKPPSTQ 348

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA

UNIPROTKB|G3V9T7 Asna1 "ArsA arsenite transporter, ATP-binding, homolog 1 (Bacterial)" [Rattus norvegicus (taxid:10116)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 165/325 (50%), Positives = 225/325 (69%)

Query:    16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
             E ++ NI+EQ SLKW+F           CS  L++ L++ R SVLIISTDPAHN+SDAF 
Sbjct:    25 EPTLSNIIEQRSLKWIFVGGKGGVGKTTCSCSLAVQLSKGRESVLIISTDPAHNISDAFD 84

Query:    76 QRFTKTPTLVNGFSNLYAMEVDPSV-----EEETGSTEGMDSL----FSELANAIPGIDE 126
             Q+F+K PT V G+ NL+AME+DPS+      +E    + M S+      E  +A PGIDE
Sbjct:    85 QKFSKVPTKVKGYDNLFAMEIDPSLGVAELPDEFFEEDNMLSMGKKMMQEAMSAFPGIDE 144

Query:   127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
             AMS+AE+++LV+ M++S +VFDTAPTGHTLRLL FP+ +E+GL ++M +KN+    I+QM
Sbjct:   145 AMSYAEVMRLVKGMNFSVVVFDTAPTGHTLRLLNFPTIVERGLGRLMQIKNQISPFISQM 204

Query:   187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246
               + G+ D    D L  +LE    VI  V++QFKDP+ TTF+CVCI EFLSLYETERL+Q
Sbjct:   205 CNMLGLGD-MNADQLASKLEETLPVIRSVSEQFKDPEQTTFICVCIAEFLSLYETERLIQ 263

Query:   247 ELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPE 306
             EL K +IDTHNII+NQ+++ D +   K+  AR ++Q KYLDQ   LY+DFHI KLPLLP 
Sbjct:   264 ELAKCKIDTHNIIVNQLVFPDPEKPCKMCEARHKIQAKYLDQMEDLYEDFHIVKLPLLPH 323

Query:   307 EVTGIEALKAFSQHFVTPYQPSTSR 331
             EV G + +  FS   + PY+P +++
Sbjct:   324 EVRGADKVNTFSALLLEPYKPPSTQ 348

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B4P1R6	ASNA_DROYA	3, ., 6, ., -, ., -	0.5657	0.8630	0.9375	N/A	no
B4J4F6	ASNA_DROGR	3, ., 6, ., -, ., -	0.5579	0.8657	0.9404	N/A	no
A1CKN5	GET3_ASPCL	3, ., 6, ., -, ., -	0.5353	0.8547	0.9176	N/A	no
A7RQM5	ASNA_NEMVE	3, ., 6, ., -, ., -	0.5887	0.8520	0.9311	N/A	no
P0CM24	GET3_CRYNJ	3, ., 6, ., -, ., -	0.5727	0.8630	0.9692	yes	no
P0CM25	GET3_CRYNB	3, ., 6, ., -, ., -	0.5727	0.8630	0.9692	N/A	no
A1D6T7	GET3_NEOFI	3, ., 6, ., -, ., -	0.5384	0.8547	0.9176	N/A	no
Q6GNQ1	ASNA_XENLA	3, ., 6, ., -, ., -	0.5337	0.8602	0.9181	N/A	no
Q16MG9	ASNA_AEDAE	3, ., 6, ., -, ., -	0.5710	0.8931	0.9560	N/A	no
O43681	ASNA_HUMAN	3, ., 6, ., -, ., -	0.5398	0.8602	0.9022	yes	no
Q8T662	ASNA_DICDI	3, ., 6, ., -, ., -	0.5552	0.8520	0.9452	yes	no
Q2UKT0	GET3_ASPOR	3, ., 6, ., -, ., -	0.5292	0.8547	0.9203	yes	no
B4N645	ASNA_DROWI	3, ., 6, ., -, ., -	0.5568	0.8794	0.9582	N/A	no
C5P9K5	GET3_COCP7	3, ., 6, ., -, ., -	0.5477	0.8301	0.9323	N/A	no
B6Q334	GET3_PENMQ	3, ., 6, ., -, ., -	0.5261	0.8547	0.9176	N/A	no
A5PJI5	ASNA_BOVIN	3, ., 6, ., -, ., -	0.5398	0.8602	0.9022	yes	no
B8N3P7	GET3_ASPFN	3, ., 6, ., -, ., -	0.5292	0.8547	0.9203	N/A	no
B4QEC4	ASNA_DROSI	3, ., 6, ., -, ., -	0.5623	0.8684	0.9434	N/A	no
A8N0V8	GET3_COPC7	3, ., 6, ., -, ., -	0.5981	0.8465	0.9478	N/A	no
O54984	ASNA_MOUSE	3, ., 6, ., -, ., -	0.5398	0.8602	0.9022	yes	no
B2DFU2	GET3_RHOGU	3, ., 6, ., -, ., -	0.5723	0.8191	0.8820	N/A	no
A8Q3T2	ASNA_BRUMA	3, ., 6, ., -, ., -	0.5443	0.8739	0.9273	N/A	no
Q4WY07	GET3_ASPFU	3, ., 6, ., -, ., -	0.5353	0.8547	0.9176	yes	no
Q0IIZ2	ASNA_XENTR	3, ., 6, ., -, ., -	0.5288	0.8520	0.9093	yes	no
B0XXL5	GET3_ASPFC	3, ., 6, ., -, ., -	0.5353	0.8547	0.9176	N/A	no
A7EHP6	GET3_SCLS1	3, ., 6, ., -, ., -	0.5507	0.8465	0.9088	N/A	no
Q5TRE7	ASNA_ANOGA	3, ., 6, ., -, ., -	0.5598	0.8821	0.9554	yes	no
A8Q0M1	GET3_MALGO	3, ., 6, ., -, ., -	0.5457	0.8465	0.9335	N/A	no
Q4P7S5	GET3_USTMA	3, ., 6, ., -, ., -	0.5732	0.8575	0.9427	N/A	no
B0CPJ0	GET3_LACBS	3, ., 6, ., -, ., -	0.5830	0.8410	0.9303	N/A	no
Q9P7F8	GET3_SCHPO	3, ., 6, ., -, ., -	0.5590	0.8520	0.9452	yes	no
Q7JWD3	ASNA_DROME	3, ., 6, ., -, ., -	0.5657	0.8630	0.9375	yes	no
Q6IQE5	ASNA_DANRE	3, ., 6, ., -, ., -	0.5432	0.8821	0.9442	yes	no
B3MHB7	ASNA_DROAN	3, ., 6, ., -, ., -	0.5718	0.8630	0.9375	N/A	no
B4KTG7	ASNA_DROMO	3, ., 6, ., -, ., -	0.5696	0.8520	0.9367	N/A	no
A5AAA1	GET3_ASPNC	3, ., 6, ., -, ., -	0.5292	0.8547	0.9149	yes	no
B2VVF0	GET3_PYRTR	3, ., 6, ., -, ., -	0.5432	0.8493	0.9144	N/A	no
Q28YJ2	ASNA_DROPS	3, ., 6, ., -, ., -	0.5688	0.8630	0.9375	yes	no
C4JZ54	GET3_UNCRE	3, ., 6, ., -, ., -	0.5368	0.8630	0.9319	N/A	no
B3N9X2	ASNA_DROER	3, ., 6, ., -, ., -	0.5596	0.8630	0.9375	N/A	no
Q6C3M9	GET3_YARLI	3, ., 6, ., -, ., -	0.5482	0.8465	0.9449	yes	no
Q1E167	GET3_COCIM	3, ., 6, ., -, ., -	0.5521	0.8630	0.9292	N/A	no
B4LN33	ASNA_DROVI	3, ., 6, ., -, ., -	0.5696	0.8520	0.9255	N/A	no
B4HR35	ASNA_DROSE	3, ., 6, ., -, ., -	0.5518	0.8684	0.9462	N/A	no
A6S7T2	GET3_BOTFB	3, ., 6, ., -, ., -	0.5465	0.8547	0.9176	N/A	no
B6H443	GET3_PENCW	3, ., 6, ., -, ., -	0.5353	0.8547	0.9176	yes	no
B6K052	GET3_SCHJY	3, ., 6, ., -, ., -	0.5496	0.8520	0.9598	N/A	no
B4H8J5	ASNA_DROPE	3, ., 6, ., -, ., -	0.5688	0.8630	0.9375	N/A	no
Q0CNR4	GET3_ASPTN	3, ., 6, ., -, ., -	0.5353	0.8547	0.9176	N/A	no
B0WEV5	ASNA_CULQU	3, ., 6, ., -, ., -	0.5882	0.8520	0.8936	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	365
pfam02374	304	pfam02374, ArsA_ATPase, Anion-transporting ATPase	1e-123
TIGR00345	284	TIGR00345, GET3_arsA_TRC40, transport-energizing A	2e-82
COG0003	322	COG0003, ArsA, Predicted ATPase involved in chromo	1e-81
cd02035	217	cd02035, ArsA, ArsA ATPase functionas as an efflux	1e-50
TIGR04291	566	TIGR04291, arsen_driv_ArsA, arsenical pump-driving	1e-40
TIGR04291	566	TIGR04291, arsen_driv_ArsA, arsenical pump-driving	7e-14
COG1192	259	COG1192, Soj, ATPases involved in chromosome parti	1e-07
pfam01656	217	pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide bi	2e-06
cd01983	99	cd01983, Fer4_NifH, The Fer4_NifH superfamily cont	8e-06
cd02034	116	cd02034, CooC, The accessory protein CooC, which c	1e-05
pfam13614	145	pfam13614, AAA_31, AAA domain	4e-05
cd02042	104	cd02042, ParA, ParA and ParB of Caulobacter cresce	9e-05
cd02036	179	cd02036, MinD, Bacterial cell division requires th	1e-04
cd02038	139	cd02038, FleN-like, FleN is a member of the Fer4_N	2e-04
PRK13185	270	PRK13185, chlL, protochlorophyllide reductase iron	4e-04
cd02117	212	cd02117, NifH_like, This family contains the NifH	4e-04
cd02032	267	cd02032, Bchl_like, This family of proteins contai	4e-04
COG3640	255	COG3640, CooC, CO dehydrogenase maturation factor	9e-04
COG0455	262	COG0455, flhG, Antiactivator of flagellar biosynth	0.001
TIGR01281	268	TIGR01281, DPOR_bchL, light-independent protochlor	0.002
COG1348	278	COG1348, NifH, Nitrogenase subunit NifH (ATPase) [	0.002
CHL00072	290	CHL00072, chlL, photochlorophyllide reductase subu	0.003
pfam00142	272	pfam00142, Fer4_NifH, 4Fe-4S iron sulfur cluster b	0.004

>gnl|CDD|217004 pfam02374, ArsA_ATPase, Anion-transporting ATPase

 Score =  355 bits (914), Expect = e-123
 Identities = 133/304 (43%), Positives = 183/304 (60%), Gaps = 16/304 (5%)

Query: 28  LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNG 87
           ++W+F GGKGGVGKTT S   ++ L+E    VL++STDPAH+LSD+F Q+F   PT + G
Sbjct: 1   MRWIFFGGKGGVGKTTVSCATAVRLSEQGKKVLLVSTDPAHSLSDSFNQKFGHEPTKIKG 60

Query: 88  FSNLYAMEVDPSVEEE------------TGSTEGMDSLFSELANAIPGIDEAMSFAEMLK 135
             NL AME+DP +E E                + ++ + +E  +++PGIDE  SF E  K
Sbjct: 61  VENLSAMEIDPQMELEEYRGEVQDPINAVLGLDMLEGILAEELSSLPGIDEIASFDEFKK 120

Query: 136 LVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDE 195
            +   +Y  ++FDTAPTGHTLRLL  P+ L   L+K++ LKN+ G +      +      
Sbjct: 121 YMDEGEYDVVIFDTAPTGHTLRLLSLPTVLSWYLEKIVKLKNQIGPLAKPFKGMGMGGSC 180

Query: 196 FGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDT 255
             E   L  LE  K+ IE+  +   DP+ T+F  VCIPE +SLYETER +QEL K+ ID 
Sbjct: 181 LPE--ALESLEETKEQIEKAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDV 238

Query: 256 HNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALK 315
             +I+NQVL   E  +     AR  +QQKYL +   L+ D  + KLPLLPEEV G+EAL+
Sbjct: 239 DAVIVNQVL--PETEQCPFCEARKEIQQKYLKEIEELFSDLPVAKLPLLPEEVVGLEALE 296

Query: 316 AFSQ 319
            FSQ
Sbjct: 297 KFSQ 300

This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. Length = 304

>gnl|CDD|232932 TIGR00345, GET3_arsA_TRC40, transport-energizing ATPase, TRC40/GET3/ArsA family

 Score =  252 bits (645), Expect = 2e-82
 Identities = 116/289 (40%), Positives = 162/289 (56%), Gaps = 22/289 (7%)

Query: 45  SSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVE--- 101
           S+  +I LAE    VL++STDPAH+LSD F+Q    TPT V G  NL A+E+DP      
Sbjct: 2   SAATAIRLAEQGKKVLLVSTDPAHSLSDVFEQEIGHTPTKVTGVENLSAVEIDPQAALEE 61

Query: 102 ---------EETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLV--QTMDYSCIVFDTA 150
                    +       M     E A   PGIDE  +F E LK +     ++  ++FDTA
Sbjct: 62  YRAKLVEQIKGNLPDGDMLGDQLEGAALSPGIDEIAAFDEFLKHMTDAENEFDVVIFDTA 121

Query: 151 PTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKD 210
           PTGHTLRLLQ P  L   L+K + +++K G M     +LF    E  +D  L +LE +K+
Sbjct: 122 PTGHTLRLLQLPEVLSSFLEKFIKIRSKLGPMA----KLFMGAGE--DDEALEKLEELKE 175

Query: 211 VIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDV 270
            IE   +   DP+ T+FV V IPE +SLYE+ER  +EL K+ I    +I+NQVL   E+ 
Sbjct: 176 QIEAAREILSDPERTSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLP--ENA 233

Query: 271 ESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQ 319
           + +  +AR  +QQKYL Q    + D  + ++PL  EE+ G+EALK  S+
Sbjct: 234 QDEFCQARWELQQKYLKQIPEKFADLPVAEVPLQKEEMVGLEALKRLSK 282

Members of this family are ATPases that energize transport, although with different partner proteins for different functions. Recent findings show that TRC40 (GET3 in yeast) in involved in the insertion of tail-anchored membrane proteins in eukaryotes. A similar function is expected for members of this family in archaea. However, the earliest discovery of a function for this protein family is ArsA, an arsenic resistance protein that partners with ArsB (see pfam02040) for As(III) efflux [Hypothetical proteins, Conserved]. Length = 284

>gnl|CDD|223082 COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score =  251 bits (643), Expect = 1e-81
 Identities = 117/317 (36%), Positives = 170/317 (53%), Gaps = 19/317 (5%)

Query: 27  SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVN 86
             + VF  GKGGVGKTT ++  ++ LAE    VL++STDPAH+L D F       P  V 
Sbjct: 1   MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVG 60

Query: 87  GFSNLYAMEVDPSVE-EETGS-----------TEGMDSLFSELANAIPGIDEAMSFAEML 134
              NL A+E+DP    EE              T G+  ++++    +PGIDEA++  ++L
Sbjct: 61  P--NLDALELDPEKALEEYWDEVKDYLARLLRTRGLGGIYADELATLPGIDEALALLKIL 118

Query: 135 KLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDD 194
           +   + +Y  IV DTAPTGHTLRLL  P  L   L+K+   K +   M+  +  L     
Sbjct: 119 EYYVSGEYDVIVVDTAPTGHTLRLLSLPEVLGWYLEKLF--KPRRKRMVKALKSLSTAAG 176

Query: 195 -EFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEI 253
               +DA+L  LE +K+ I  V +   +PD T+F  V IPE LSLYET+R V+ L+ + I
Sbjct: 177 SPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVERLSLYGI 236

Query: 254 DTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEA 313
               +I+N++L D+ D     L AR ++QQKYL +    + D  + K+PLL EE  G+EA
Sbjct: 237 PVDAVIVNKILPDEADQP--FLEARRKIQQKYLKELEETFSDLAVVKVPLLAEEPVGLEA 294

Query: 314 LKAFSQHFVTPYQPSTS 330
           L+           P+  
Sbjct: 295 LEKLGDLLYGDESPAPV 311

Length = 322

>gnl|CDD|238992 cd02035, ArsA, ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

 Score =  168 bits (427), Expect = 1e-50
 Identities = 78/284 (27%), Positives = 114/284 (40%), Gaps = 79/284 (27%)

Query: 30  WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFS 89
            +F  GKGGVGKTT ++  ++ LAE    VL++STDPAHNLSD              G  
Sbjct: 1   VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSD-------------KGLP 47

Query: 90  NLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDT 149
           NL    +    E                      I   +   E+    +           
Sbjct: 48  NLSDAFIVEDPE----------------------IAPNLYREEVDATRRVERAW------ 79

Query: 150 APTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMK 209
              G    L+   +    G++++ SL          + R F               EG+ 
Sbjct: 80  ---GGEGGLMLELAAALPGIEELASL--------LAVFREF--------------SEGLY 114

Query: 210 DVIE----------R--VNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHN 257
           DVI           R  V +   DP+ T+F  V +PE L LYETER + EL  + I    
Sbjct: 115 DVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDA 174

Query: 258 IIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKL 301
           +++N+VL  + D +   L AR ++QQKYL +   L+DD  I  +
Sbjct: 175 VVVNRVLPAEVD-DDPFLAARRQIQQKYLAEIEELFDDLPIVPV 217

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence. Length = 217

>gnl|CDD|213904 TIGR04291, arsen_driv_ArsA, arsenical pump-driving ATPase

 Score =  150 bits (380), Expect = 1e-40
 Identities = 96/325 (29%), Positives = 141/325 (43%), Gaps = 48/325 (14%)

Query: 29  KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGF 88
            ++F  GKGGVGKT+ +   +I LA+    VL++STDPA N+   F Q      T + G 
Sbjct: 4   PYLFFTGKGGVGKTSIACATAINLADQGKRVLLVSTDPASNVGQVFGQTIGNKITAIAGV 63

Query: 89  SNLYAMEVDP----------SVE--EETGSTEGMDSLFSELANA----IPGIDEAMSFAE 132
             L+A+E+DP           V+        + + S+  +L+ A    I   DE      
Sbjct: 64  PGLFALEIDPQAAAQAYRARIVDPVRGVLPDDVVSSIEEQLSGACTTEIAAFDEFTGLLT 123

Query: 133 MLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGI 192
             +L Q  D+  I+FDTAPTGHT+RLLQ P      LD      N  G            
Sbjct: 124 DAELTQDFDH--IIFDTAPTGHTIRLLQLPGAWSDFLDT-----NPNGA----------- 165

Query: 193 DDEFGEDALLGRLEGMKDVIERVNKQFK---DPDLTTFVCVCIPEFLSLYETERLVQELT 249
                  + LG L G++    +  K  +   DP+ T  + V  P+  +L E  R  QEL 
Sbjct: 166 -------SCLGPLAGLEKQRAQYAKAVEALSDPERTRLILVARPQKSTLLEVARTHQELA 218

Query: 250 KFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVT 309
              +    ++IN VL   E  +  L +A  + +QK L     +  +     LPL P  + 
Sbjct: 219 AIGLKNQYLVINGVLPPTEASDDPLAQAIYKREQKALQHMPAILANLPRYTLPLKPYNLV 278

Query: 310 GIEALKAFSQHFVTPYQPSTSRDTV 334
           G+EAL+      +   QP  S D  
Sbjct: 279 GLEALR----QLLNDDQPQLSLDIT 299

The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite). Length = 566

>gnl|CDD|213904 TIGR04291, arsen_driv_ArsA, arsenical pump-driving ATPase

 Score = 72.4 bits (178), Expect = 7e-14
 Identities = 73/300 (24%), Positives = 120/300 (40%), Gaps = 64/300 (21%)

Query: 23  LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTP 82
           + +     +   GKGGVGKTT ++ +++ LA     V + ++DPA +LS           
Sbjct: 316 IAKSEKGLIMTMGKGGVGKTTVAAAIAVRLANKGLDVHLTTSDPAAHLSV---------- 365

Query: 83  TLVNGFSNLYAMEVDPSVEEE---------TGST---EGMDSLFSELANAIPGIDEAMSF 130
           TL    +NL    +DP  E E          G     +G   L  +L +  P  +E   F
Sbjct: 366 TLTGSLNNLQVSRIDPKQETERYRQEVLATKGKELDEDGKAYLEEDLRS--PCTEEIAVF 423

Query: 131 AEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLF 190
               ++++      +V DTAPTGHTL LL       + +++ M                 
Sbjct: 424 QAFSRIIREAGDRFVVMDTAPTGHTLLLLDATGAYHREVERKMG---------------- 467

Query: 191 GIDDEFGEDALLGRLEGMKDVIERVNK---QFKDPDLTTFVCVCIPEFLSLYETERLVQE 247
                              D  E V     Q +DP+ T  + V +PE   + E  RL ++
Sbjct: 468 -------------------DTPEHVTTPMMQLQDPERTKVLLVTLPETTPVLEAARLQED 508

Query: 248 LTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEE 307
           L +  I+    +IN  L    +  S LL  R + + K++++   ++ D     +PL  EE
Sbjct: 509 LRRAGIEPWWWVINNSLA-ATNTTSPLLSQRAQNELKWIEKVKRIHAD-RYAVIPLQAEE 566

The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite). Length = 566

>gnl|CDD|224113 COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 11/129 (8%)

Query: 31  VFVGGKGGVGKTTCSSILSILLAEVRP-SVLIISTDPAHNLSDAFQQRFTKTPTLVNGFS 89
                KGGVGKTT +  L+  LA+     VL+I  DP  +L+     R      L   ++
Sbjct: 6   AVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRPDLEGDL---YN 62

Query: 90  NLYAMEVDPSVEEETGSTEGMD------SLFSELANAIPGIDEAMSFAEMLKLVQTMDYS 143
            L  ++  P + + T   EG+D       L       +  + + +    +L  V+  DY 
Sbjct: 63  LLSGLKERPDILDYTVVIEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVK-DDYD 121

Query: 144 CIVFDTAPT 152
            I+ DT P+
Sbjct: 122 YIIIDTPPS 130

Length = 259

>gnl|CDD|216631 pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide binding domain

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 31/133 (23%), Positives = 45/133 (33%), Gaps = 15/133 (11%)

Query: 30  WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTP-TLVNGF 88
               G KGGVGKTT ++ L+  LA+    VL+I  DP  N S    +     P  L    
Sbjct: 1   IAIAGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQANNSSYLGKVEEVLPEGLEIVD 60

Query: 89  SNLYAMEVDPSVEEETGSTEGMDSL-----FSELANA----IPGIDEAMSFAEMLKLVQT 139
           +          V      +  +D L        L N     I            L+ +  
Sbjct: 61  AQALQAIAAAIVP-----SRNLDPLLLIPSNLSLENFESELIVEGKRESRLRAALESLIK 115

Query: 140 MDYSCIVFDTAPT 152
           + Y  ++ D  P 
Sbjct: 116 LAYDYVIIDGPPG 128

This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family. Length = 217

>gnl|CDD|238941 cd01983, Fer4_NifH, The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLII 62
          + V GKGGVGKTT ++ L+  LA+    VL+I
Sbjct: 2  IVVTGKGGVGKTTLAANLAAALAKRGKRVLLI 33

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. Length = 99

>gnl|CDD|238991 cd02034, CooC, The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF 74
          + GKGGVGKTT +++L+  LAE    VL I  DP  +L +  
Sbjct: 4  ITGKGGVGKTTIAALLARYLAEKGKPVLAIDADPD-DLPERL 44

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function. Length = 116

>gnl|CDD|222264 pfam13614, AAA_31, AAA domain

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 14/125 (11%)

Query: 30  WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFS 89
                  GG GKTT +  L+  LAE  P VL +  +            F        G S
Sbjct: 3   IGVYSPVGGEGKTTFALNLAQSLAEEGPKVLYLDLEEYS----GDLALFLGLEP--KGLS 56

Query: 90  N-LYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTM--DYSCIV 146
           + LY ++    ++       G     +   N        +S  E  +L++ +   Y  IV
Sbjct: 57  DLLYYLK---RLDSMLIQAMGGLDYLAPPRNPED--LREVSPEEWEQLLERLRERYDVIV 111

Query: 147 FDTAP 151
            D  P
Sbjct: 112 LDLGP 116

This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop. Length = 145

>gnl|CDD|238997 cd02042, ParA, ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 16/36 (44%), Positives = 19/36 (52%)

Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
               KGGVGKTT +  L+  LA     VL+I  DP
Sbjct: 3  AVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDP 38

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. Length = 104

>gnl|CDD|238993 cd02036, MinD, Bacterial cell division requires the formation of a septum at mid-cell

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLS 71
          V   GKGGVGKTT ++ L   LA++   V++I  D    NL 
Sbjct: 3  VVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLD 44

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. Length = 179

>gnl|CDD|238995 cd02038, FleN-like, FleN is a member of the Fer4_NifH superfamily

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65
            GKGGVGKT  S+ L++ LA++   VL++  D
Sbjct: 5  TSGKGGVGKTNISANLALALAKLGKRVLLLDAD 37

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. Length = 139

>gnl|CDD|237293 PRK13185, chlL, protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 6/53 (11%)

Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLV 85
          V GKGG+GK+T SS LS   A++   VL I  DP H+ +      FT T  LV
Sbjct: 7  VYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDST------FTLTGKLV 53

Length = 270

>gnl|CDD|239034 cd02117, NifH_like, This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
          GKGG+GK+T S  LS  LAE+   VL +  DP  
Sbjct: 7  GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKA 40

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. Length = 212

>gnl|CDD|238989 cd02032, Bchl_like, This family of proteins contains bchL and chlL

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 20/37 (54%), Positives = 25/37 (67%)

Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69
          V GKGG+GK+T SS LS+ LA+    VL I  DP H+
Sbjct: 5  VYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHD 41

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. Length = 267

>gnl|CDD|226166 COG3640, CooC, CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 33 VGGKGGVGKTTCSSILSILLAEVRP-SVLIISTDPAHNLSDAF 74
          + GKGGVGKTT +++L   L      +VL++  DP  NL +A 
Sbjct: 5  ITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEAL 47

Length = 255

>gnl|CDD|223531 COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 32 FVGGKGGVGKTTCSSILSILLAEVRPS-VLIISTDPA-HNLSDAF 74
           V GKGGVGKTT ++ L   LA +    VL+I  D    NLS   
Sbjct: 7  VVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLL 51

Length = 262

>gnl|CDD|130348 TIGR01281, DPOR_bchL, light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 19/37 (51%), Positives = 25/37 (67%)

Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69
          V GKGG+GK+T SS LS+  A++   VL I  DP H+
Sbjct: 5  VYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHD 41

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 268

>gnl|CDD|224267 COG1348, NifH, Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
          GKGG+GK+T S  L+  LAE+   VLI+  DP  
Sbjct: 8  GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKA 41

Length = 278

>gnl|CDD|177011 CHL00072, chlL, photochlorophyllide reductase subunit L

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69
          V GKGG+GK+T S  +SI LA     VL I  DP H+
Sbjct: 5  VYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHD 41

Length = 290

>gnl|CDD|201032 pfam00142, Fer4_NifH, 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69
          GKGG+GK+T +   S  LAE+   VLI+  DP  +
Sbjct: 7  GKGGIGKSTTTQNTSAALAEMGKKVLIVGCDPKAD 41

Length = 272

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
KOG2825	323	consensus Putative arsenite-translocating ATPase [	100.0
PF02374	305	ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_	100.0
COG0003	322	ArsA Predicted ATPase involved in chromosome parti	100.0
cd00550	254	ArsA_ATPase Oxyanion-translocating ATPase (ArsA).	100.0
TIGR00345	284	arsA arsenite-activated ATPase (arsA). The N-termi	100.0
cd02035	217	ArsA ArsA ATPase functionas as an efflux pump loca	99.96
KOG3022	300	consensus Predicted ATPase, nucleotide-binding [Ce	99.92
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	99.92
PRK11670	369	antiporter inner membrane protein; Provisional	99.91
COG0489	265	Mrp ATPases involved in chromosome partitioning [C	99.91
TIGR03029	274	EpsG chain length determinant protein tyrosine kin	99.9
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	99.88
cd02117	212	NifH_like This family contains the NifH (iron prot	99.87
COG0455	262	flhG Antiactivator of flagellar biosynthesis FleN,	99.87
CHL00175	281	minD septum-site determining protein; Validated	99.87
TIGR03018	207	pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t	99.86
PRK13869	405	plasmid-partitioning protein RepA; Provisional	99.86
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	99.86
PRK13232	273	nifH nitrogenase reductase; Reviewed	99.86
PRK11519	719	tyrosine kinase; Provisional	99.85
COG2894	272	MinD Septum formation inhibitor-activating ATPase	99.84
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	99.84
PRK13849	231	putative crown gall tumor protein VirC1; Provision	99.84
PHA02518	211	ParA-like protein; Provisional	99.84
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	99.84
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	99.84
TIGR03453	387	partition_RepA plasmid partitioning protein RepA.	99.84
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	99.83
PRK13235	274	nifH nitrogenase reductase; Reviewed	99.83
cd02040	270	NifH NifH gene encodes component II (iron protein)	99.83
cd03110	179	Fer4_NifH_child This protein family's function is	99.83
cd02032	267	Bchl_like This family of proteins contains bchL an	99.83
PRK13705	388	plasmid-partitioning protein SopA; Provisional	99.82
PRK13233	275	nifH nitrogenase reductase; Reviewed	99.82
PRK13230	279	nitrogenase reductase-like protein; Reviewed	99.82
PHA02519	387	plasmid partition protein SopA; Reviewed	99.82
PRK10818	270	cell division inhibitor MinD; Provisional	99.82
PRK13236	296	nitrogenase reductase; Reviewed	99.82
CHL00072	290	chlL photochlorophyllide reductase subunit L	99.82
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	99.82
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	99.82
PRK13234	295	nifH nitrogenase reductase; Reviewed	99.82
cd02036	179	MinD Bacterial cell division requires the formatio	99.82
TIGR01287	275	nifH nitrogenase iron protein. This model describe	99.81
PRK10037	250	cell division protein; Provisional	99.8
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	99.79
COG1192	259	Soj ATPases involved in chromosome partitioning [C	99.79
TIGR03815	322	CpaE_hom_Actino helicase/secretion neighborhood Cp	99.79
PRK13231	264	nitrogenase reductase-like protein; Reviewed	99.78
TIGR02016	296	BchX chlorophyllide reductase iron protein subunit	99.77
cd02033	329	BchX Chlorophyllide reductase converts chlorophyll	99.75
PF06564	243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	99.73
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	99.72
cd03111	106	CpaE_like This protein family consists of proteins	99.71
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	99.7
COG1149	284	MinD superfamily P-loop ATPase containing an inser	99.68
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	99.66
PF00142	273	Fer4_NifH: 4Fe-4S iron sulfur cluster binding prot	99.66
PF09140	261	MipZ: ATPase MipZ; InterPro: IPR015223 Cell divisi	99.65
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	99.64
COG1348	278	NifH Nitrogenase subunit NifH (ATPase) [Inorganic	99.57
TIGR00064	272	ftsY signal recognition particle-docking protein F	99.47
cd03114	148	ArgK-like The function of this protein family is u	99.4
PF13614	157	AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ	99.39
PRK13886	241	conjugal transfer protein TraL; Provisional	99.34
cd03115	173	SRP The signal recognition particle (SRP) mediates	99.33
PRK10867	433	signal recognition particle protein; Provisional	99.32
cd02034	116	CooC The accessory protein CooC, which contains a	99.32
PRK10416	318	signal recognition particle-docking protein FtsY;	99.3
TIGR00347	166	bioD dethiobiotin synthase. Dethiobiotin synthase	99.29
TIGR00959	428	ffh signal recognition particle protein. This mode	99.27
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	99.24
PRK13768	253	GTPase; Provisional	99.24
PRK00771	437	signal recognition particle protein Srp54; Provisi	99.2
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	99.17
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	99.16
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	99.09
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	99.08
PRK14974	336	cell division protein FtsY; Provisional	99.04
PRK00090	222	bioD dithiobiotin synthetase; Reviewed	99.0
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.96
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.95
PF10609	81	ParA: ParA/MinD ATPase like; InterPro: IPR019591 T	98.94
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.92
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.91
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.87
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.84
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	98.77
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.75
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	98.74
cd03109	134	DTBS Dethiobiotin synthetase (DTBS) is the penulti	98.71
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.68
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	98.68
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	98.62
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.59
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.5
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.46
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.44
KOG0780	483	consensus Signal recognition particle, subunit Srp	98.41
KOG0781	587	consensus Signal recognition particle receptor, al	98.39
PRK05632	684	phosphate acetyltransferase; Reviewed	98.36
PRK12374	231	putative dithiobiotin synthetase; Provisional	98.32
COG0132	223	BioD Dethiobiotin synthetase [Coenzyme metabolism]	98.32
PF13500	199	AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R	98.31
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.27
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.25
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.25
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	98.24
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.2
cd01394	218	radB RadB. The archaeal protein radB shares simila	98.16
PRK00784	488	cobyric acid synthase; Provisional	98.09
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	98.0
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.99
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.95
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.95
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	97.94
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.92
PRK06067	234	flagellar accessory protein FlaH; Validated	97.92
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.91
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.89
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	97.89
TIGR00313	475	cobQ cobyric acid synthase CobQ.	97.86
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.83
KOG1533	290	consensus Predicted GTPase [General function predi	97.82
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.82
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.79
PRK09354	349	recA recombinase A; Provisional	97.73
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	97.71
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	97.7
COG1341	398	Predicted GTPase or GTP-binding protein [General f	97.69
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.68
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.65
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.65
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.65
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.63
PRK04328	249	hypothetical protein; Provisional	97.6
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.59
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.53
PRK09302	509	circadian clock protein KaiC; Reviewed	97.49
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	97.48
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	97.48
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	97.48
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	97.46
PRK11823	446	DNA repair protein RadA; Provisional	97.45
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	97.42
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	97.4
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.39
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.37
PRK04301	317	radA DNA repair and recombination protein RadA; Va	97.37
PRK07667	193	uridine kinase; Provisional	97.35
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	97.34
cd00477	524	FTHFS Formyltetrahydrofolate synthetase (FTHFS) ca	97.34
PRK09519	790	recA DNA recombination protein RecA; Reviewed	97.33
PHA02542	473	41 41 helicase; Provisional	97.32
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	97.27
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.27
PRK04296	190	thymidine kinase; Provisional	97.26
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	97.23
PRK00889	175	adenylylsulfate kinase; Provisional	97.22
TIGR02236	310	recomb_radA DNA repair and recombination protein R	97.22
cd03113	255	CTGs CTP synthetase (CTPs) is a two-domain protein	97.17
PRK08233	182	hypothetical protein; Provisional	97.17
PRK06696	223	uridine kinase; Validated	97.15
PRK07952	244	DNA replication protein DnaC; Validated	97.14
PRK09302	509	circadian clock protein KaiC; Reviewed	97.14
PRK13506	578	formate--tetrahydrofolate ligase; Provisional	97.13
PTZ00035	337	Rad51 protein; Provisional	97.1
COG3598	402	RepA RecA-family ATPase [DNA replication, recombin	97.1
PRK00089	292	era GTPase Era; Reviewed	97.09
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	97.06
PRK05973	237	replicative DNA helicase; Provisional	97.03
PF00154	322	RecA: recA bacterial DNA recombination protein; In	97.0
smart00382	148	AAA ATPases associated with a variety of cellular	96.99
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	96.99
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.98
PRK03846	198	adenylylsulfate kinase; Provisional	96.98
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	96.96
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	96.94
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	96.93
PHA00729	226	NTP-binding motif containing protein	96.91
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	96.91
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	96.9
COG1159	298	Era GTPase [General function prediction only]	96.9
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	96.88
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.88
PRK05439	311	pantothenate kinase; Provisional	96.86
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	96.84
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	96.84
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.82
PF13479	213	AAA_24: AAA domain	96.82
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	96.8
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	96.77
COG2874	235	FlaH Predicted ATPases involved in biogenesis of a	96.76
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	96.76
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.75
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	96.75
COG1484	254	DnaC DNA replication protein [DNA replication, rec	96.74
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	96.73
PF13245	76	AAA_19: Part of AAA domain	96.7
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.7
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	96.69
PRK06762	166	hypothetical protein; Provisional	96.68
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.66
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.64
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.61
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.61
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	96.58
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	96.58
PRK06526	254	transposase; Provisional	96.56
PRK08506	472	replicative DNA helicase; Provisional	96.53
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.53
PRK05541	176	adenylylsulfate kinase; Provisional	96.52
PRK05595	444	replicative DNA helicase; Provisional	96.5
PRK08084	235	DNA replication initiation factor; Provisional	96.48
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	96.45
PRK05480	209	uridine/cytidine kinase; Provisional	96.43
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	96.42
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	96.41
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	96.4
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.38
PRK08760	476	replicative DNA helicase; Provisional	96.37
PRK12377	248	putative replication protein; Provisional	96.37
PRK08006	471	replicative DNA helicase; Provisional	96.37
cd03116	159	MobB Molybdenum is an essential trace element in t	96.36
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.33
TIGR00665	434	DnaB replicative DNA helicase. This model describe	96.33
PRK06749	428	replicative DNA helicase; Provisional	96.31
PRK15453	290	phosphoribulokinase; Provisional	96.3
PRK08727	233	hypothetical protein; Validated	96.3
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	96.27
PRK08939	306	primosomal protein DnaI; Reviewed	96.25
PRK05748	448	replicative DNA helicase; Provisional	96.24
PRK08840	464	replicative DNA helicase; Provisional	96.24
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	96.23
COG4240	300	Predicted kinase [General function prediction only	96.2
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	96.18
PRK06321	472	replicative DNA helicase; Provisional	96.18
PRK09183	259	transposase/IS protein; Provisional	96.17
PRK09165	497	replicative DNA helicase; Provisional	96.16
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.15
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	96.14
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	96.12
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.11
PRK06904	472	replicative DNA helicase; Validated	96.11
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	96.07
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.03
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	96.0
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	95.99
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	95.95
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	95.94
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	95.94
PRK06893	229	DNA replication initiation factor; Validated	95.93
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	95.92
PRK06835	329	DNA replication protein DnaC; Validated	95.91
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	95.87
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	95.87
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	95.87
PRK05636	505	replicative DNA helicase; Provisional	95.85
PRK08181	269	transposase; Validated	95.84
PRK00411	394	cdc6 cell division control protein 6; Reviewed	95.81
PF06418	276	CTP_synth_N: CTP synthase N-terminus; InterPro: IP	95.78
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	95.76
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	95.76
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	95.74
PRK07004	460	replicative DNA helicase; Provisional	95.72
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	95.7
PF05729	166	NACHT: NACHT domain	95.69
cd00881	189	GTP_translation_factor GTP translation factor fami	95.66
PRK05642	234	DNA replication initiation factor; Validated	95.65
PRK06547	172	hypothetical protein; Provisional	95.6
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	95.57
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	95.56
PRK10865	857	protein disaggregation chaperone; Provisional	95.54
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	95.52
PF12846	304	AAA_10: AAA-like domain	95.52
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	95.51
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	95.51
PRK04220	301	2-phosphoglycerate kinase; Provisional	95.45
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	95.44
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	95.44
PRK00131	175	aroK shikimate kinase; Reviewed	95.44
PRK08116	268	hypothetical protein; Validated	95.41
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	95.41
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	95.4
PRK15494	339	era GTPase Era; Provisional	95.39
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	95.38
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	95.37
PRK06921	266	hypothetical protein; Provisional	95.36
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	95.34
PRK06217	183	hypothetical protein; Validated	95.27
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	95.24
PRK07414	178	cob(I)yrinic acid a,c-diamide adenosyltransferase;	95.23
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	95.19
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	95.17
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	95.15
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	95.14
COG1110	1187	Reverse gyrase [DNA replication, recombination, an	95.12
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	95.1
PF13173	128	AAA_14: AAA domain	95.07
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.06
PLN03046	460	D-glycerate 3-kinase; Provisional	95.02
cd03112	158	CobW_like The function of this protein family is u	95.02
PRK12339	197	2-phosphoglycerate kinase; Provisional	95.01
PLN02796	347	D-glycerate 3-kinase	95.0
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	94.98
CHL00095	821	clpC Clp protease ATP binding subunit	94.98
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	94.92
PRK05380	533	pyrG CTP synthetase; Validated	94.91
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	94.86
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	94.82
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	94.8
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	94.74
PLN02327	557	CTP synthase	94.72
TIGR00235	207	udk uridine kinase. Model contains a number of lon	94.68
PF01935	229	DUF87: Domain of unknown function DUF87; InterPro:	94.67
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	94.67
PRK12740	668	elongation factor G; Reviewed	94.67
PRK07773	886	replicative DNA helicase; Validated	94.67
PRK06851	367	hypothetical protein; Provisional	94.65
PF00004	132	AAA: ATPase family associated with various cellula	94.64
PHA02530	300	pseT polynucleotide kinase; Provisional	94.61
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	94.6
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	94.57
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	94.5
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	94.48
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	94.46
PRK10490	895	sensor protein KdpD; Provisional	94.44
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	94.42
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	94.41
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	94.35
PRK00093	435	GTP-binding protein Der; Reviewed	94.34
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	94.32
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	94.31
COG0305	435	DnaB Replicative DNA helicase [DNA replication, re	94.27
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	94.25
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	94.24
PRK07933	213	thymidylate kinase; Validated	94.24
PRK06761	282	hypothetical protein; Provisional	94.2
PTZ00301	210	uridine kinase; Provisional	94.15
PRK13946	184	shikimate kinase; Provisional	94.14
PRK09866	741	hypothetical protein; Provisional	94.13
PRK00652	325	lpxK tetraacyldisaccharide 4'-kinase; Reviewed	94.13
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	94.08
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	94.06
COG2403	449	Predicted GTPase [General function prediction only	94.03
PRK08118	167	topology modulation protein; Reviewed	93.99
PRK04040	188	adenylate kinase; Provisional	93.98
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	93.93
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	93.9
PRK13947	171	shikimate kinase; Provisional	93.88
PRK00698	205	tmk thymidylate kinase; Validated	93.84
TIGR00682	311	lpxK tetraacyldisaccharide 4'-kinase. Also called	93.81
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	93.8
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	93.79
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	93.78
COG2256	436	MGS1 ATPase related to the helicase subunit of the	93.78
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	93.77
COG2109	198	BtuR ATP:corrinoid adenosyltransferase [Coenzyme m	93.71
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	93.68
COG1855	604	ATPase (PilT family) [General function prediction	93.65
PLN03025	319	replication factor C subunit; Provisional	93.65
PLN02924	220	thymidylate kinase	93.55
PRK01906	338	tetraacyldisaccharide 4'-kinase; Provisional	93.54
PRK03839	180	putative kinase; Provisional	93.45
PRK07261	171	topology modulation protein; Provisional	93.45
PLN02348	395	phosphoribulokinase	93.38
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	93.38
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	93.37
TIGR00376	637	DNA helicase, putative. The gene product may repre	93.33
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	93.32
PRK13808	333	adenylate kinase; Provisional	93.26
PRK00049	396	elongation factor Tu; Reviewed	93.23
PRK14491	597	putative bifunctional molybdopterin-guanine dinucl	93.22
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	93.21
PRK12338	319	hypothetical protein; Provisional	93.21
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	93.21
PRK12402	337	replication factor C small subunit 2; Reviewed	93.17
PRK03731	171	aroL shikimate kinase II; Reviewed	93.16
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	93.16
PRK13973	213	thymidylate kinase; Provisional	93.04
PRK01184	184	hypothetical protein; Provisional	93.03
PLN02200	234	adenylate kinase family protein	93.02
PRK04195	482	replication factor C large subunit; Provisional	92.96
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	92.96
PRK12337	475	2-phosphoglycerate kinase; Provisional	92.95
PF02606	326	LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPr	92.94
KOG2749	415	consensus mRNA cleavage and polyadenylation factor	92.9
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	92.85
PRK03003	472	GTP-binding protein Der; Reviewed	92.84
PRK12422	445	chromosomal replication initiation protein; Provis	92.84
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	92.81
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	92.79
KOG3062	281	consensus RNA polymerase II elongator associated p	92.78
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	92.77
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	92.77
PRK13764	602	ATPase; Provisional	92.72
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	92.71
PRK06851	367	hypothetical protein; Provisional	92.67
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	92.66
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	92.65
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	92.63
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	92.6
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	92.57
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	92.5
PRK13948	182	shikimate kinase; Provisional	92.48
PLN03127	447	Elongation factor Tu; Provisional	92.44
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	92.42
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	92.3
PRK14730	195	coaE dephospho-CoA kinase; Provisional	92.27
TIGR02760	1960	TraI_TIGR conjugative transfer relaxase protein Tr	92.25
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	92.23
PF13555	62	AAA_29: P-loop containing region of AAA domain	92.16
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	92.15
CHL00181	287	cbbX CbbX; Provisional	92.12
PRK14528	186	adenylate kinase; Provisional	92.1
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	92.08
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	91.98
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	91.88
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	91.88
PLN02165	334	adenylate isopentenyltransferase	91.78
PRK00149	450	dnaA chromosomal replication initiation protein; R	91.77
TIGR00503	527	prfC peptide chain release factor 3. This translat	91.73
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	91.7
PRK12736	394	elongation factor Tu; Reviewed	91.7
PRK08356	195	hypothetical protein; Provisional	91.69
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	91.67
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	91.59
PRK13695	174	putative NTPase; Provisional	91.57
KOG2028	554	consensus ATPase related to the helicase subunit o	91.57
PRK00440	319	rfc replication factor C small subunit; Reviewed	91.52
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	91.52
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	91.52
PLN02422	232	dephospho-CoA kinase	91.49
PRK14527	191	adenylate kinase; Provisional	91.42
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	91.41
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	91.33
PRK14531	183	adenylate kinase; Provisional	91.31
PRK00741	526	prfC peptide chain release factor 3; Provisional	91.26
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	91.24
KOG2878	282	consensus Predicted kinase [General function predi	91.23
PTZ00141	446	elongation factor 1- alpha; Provisional	91.22
PRK00625	173	shikimate kinase; Provisional	91.2
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	91.19
PF01268	557	FTHFS: Formate--tetrahydrofolate ligase; InterPro:	91.18
PRK14088	440	dnaA chromosomal replication initiation protein; P	91.14
TIGR02768	744	TraA_Ti Ti-type conjugative transfer relaxase TraA	91.13
PRK12739	691	elongation factor G; Reviewed	91.13
PRK05707	328	DNA polymerase III subunit delta'; Validated	91.1
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	91.1
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	91.08
PRK10436	462	hypothetical protein; Provisional	91.07
PRK12735	396	elongation factor Tu; Reviewed	91.07
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	91.05
PRK14734	200	coaE dephospho-CoA kinase; Provisional	91.05
PRK14733	204	coaE dephospho-CoA kinase; Provisional	90.99
PTZ00112	1164	origin recognition complex 1 protein; Provisional	90.97
PRK00007	693	elongation factor G; Reviewed	90.97
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	90.91
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	90.91
CHL00071	409	tufA elongation factor Tu	90.89
PRK10536	262	hypothetical protein; Provisional	90.87
PRK13975	196	thymidylate kinase; Provisional	90.79
PRK13342	413	recombination factor protein RarA; Reviewed	90.78
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	90.78
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	90.74
PRK04182	180	cytidylate kinase; Provisional	90.71
TIGR02533	486	type_II_gspE general secretory pathway protein E.	90.61
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	90.6
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	90.49
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	90.44
PRK05057	172	aroK shikimate kinase I; Reviewed	90.43
TIGR03783	829	Bac_Flav_CT_G Bacteroides conjugation system ATPas	90.39
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	90.37
PTZ00451	244	dephospho-CoA kinase; Provisional	90.27
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	90.25
PRK02496	184	adk adenylate kinase; Provisional	90.23
PRK14532	188	adenylate kinase; Provisional	90.22
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	90.22
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	90.2
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	90.16
TIGR00485	394	EF-Tu translation elongation factor TU. This align	90.1
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	90.04
PRK10865	857	protein disaggregation chaperone; Provisional	90.0
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	89.99
PRK13507	587	formate--tetrahydrofolate ligase; Provisional	89.97
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	89.93
PF05707	193	Zot: Zonular occludens toxin (Zot); InterPro: IPR0	89.85
PLN03126	478	Elongation factor Tu; Provisional	89.85
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	89.81
PRK07429	327	phosphoribulokinase; Provisional	89.76
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	89.71
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	89.7
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	89.69
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	89.69
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	89.66
PRK10646	153	ADP-binding protein; Provisional	89.64
PF00580	315	UvrD-helicase: UvrD/REP helicase N-terminal domain	89.63
PRK13976	209	thymidylate kinase; Provisional	89.62
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	89.51
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	89.49

>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.7e-58  Score=405.90  Aligned_cols=309  Identities=66%  Similarity=1.047  Sum_probs=287.6

Q ss_pred             hcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCce
Q 017873           13 EIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLY   92 (365)
Q Consensus        13 ~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~   92 (365)
                      +-+.+++++++++...+++|++|||||||||+++.||..+|.-+.+||+|++||+||+++.|+.++...|+.+.|+.||.
T Consensus         4 dple~~l~nil~q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qkftk~pt~V~Gf~nLf   83 (323)
T KOG2825|consen    4 DPLEATLQNILEQTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQKFTKTPTKVEGFENLF   83 (323)
T ss_pred             CccchhHHHHhhcceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHHHHhcCCCccccChhhhe
Confidence            34566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCccccc-cccc---c----cCc--cchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhch
Q 017873           93 AMEVDPSVEE-ETGS---T----EGM--DSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFP  162 (365)
Q Consensus        93 ~~~~d~~~~~-~~~~---~----~~~--~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp  162 (365)
                      +++|||+..+ ++.+   .    .+.  ..++.++....||.++.+.+.++++.++..+||+|||||+|++|++++|.+|
T Consensus        84 AMEIDp~~e~~~~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~F~~vVFDTAPTGHTLRlL~fP  163 (323)
T KOG2825|consen   84 AMEIDPNVEMGDMPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMNFDVVVFDTAPTGHTLRLLQFP  163 (323)
T ss_pred             eeecCCchhhhhhHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccccceEEeccCCCcceehhhccc
Confidence            9999999776 2211   1    112  3456777888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHH
Q 017873          163 STLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE  242 (365)
Q Consensus       163 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~  242 (365)
                      ..+...+.++.+++.+++|+++++.+++|.+ +.+.+++...++++++.++++++.++||+.|+|++|+.|+.+|+.||+
T Consensus       164 ~~lek~lgKl~~l~~k~~pm~sq~~sm~g~~-~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEte  242 (323)
T KOG2825|consen  164 TTLEKGLGKLLSLKNKIGPMLSQMGSMFGME-DAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETE  242 (323)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-cCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHHHHH
Confidence            9999999999999999999999999999863 467889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHhhc
Q 017873          243 RLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFV  322 (365)
Q Consensus       243 ~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~l~  322 (365)
                      |+++.|.++++++..||+|+.++|+.+..|+.|.+|+++|.+|+.+|.+.|.+.++.++|+.+.|++|.++|+.+++-++
T Consensus       243 RliqeL~k~~idthnIIVNQLL~~~~~~~ck~C~ar~k~Q~kyLdqi~elyedfhv~klPl~~~EvrG~~al~~fse~l~  322 (323)
T KOG2825|consen  243 RLIQELAKQGIDTHNIIVNQLLFPDNEVSCKKCAARRKMQSKYLDQIEELYEDFHVVKLPLLPMEVRGVEALNFFSEILL  322 (323)
T ss_pred             HHHHHHHhcCCcccceeeeeccCCCCccchHHHHHHHHHHHHHhhhHHHHHhhcceeecccchhhhcCHHHHHHHHHHhc
Confidence            99999999999999999999998886578999999999999999999999999999999999999999999999998764

>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B

Probab=100.00  E-value=4.2e-55  Score=416.20  Aligned_cols=293  Identities=39%  Similarity=0.667  Sum_probs=250.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccc-cc--
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET--  104 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~~--  104 (365)
                      |+++|++|||||||||+|+++|.++|++|+||||+++||+|+++++||.+.+.+|+.+.+.+||++.++|+...+ ++  
T Consensus         1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~~~~~~v~~~~~L~a~eid~~~~~~~~~~   80 (305)
T PF02374_consen    1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLGGEPTKVEGVPNLSAMEIDPEAELEEYWE   80 (305)
T ss_dssp             -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--BSS-EEETTCSSEEEEE--HHHHHHHHHH
T ss_pred             CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCCCCCeEecCCCCceeeecCHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999999998999999999998877 21  


Q ss_pred             --ccc-------cCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHH
Q 017873          105 --GST-------EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSL  175 (365)
Q Consensus       105 --~~~-------~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~  175 (365)
                        ...       ...+.+...+....||++|...+.++.+.++..+||+|||||||++|+++++.+|+.+.||+++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~ptg~tLrlL~lP~~l~~~l~~l~~~  160 (305)
T PF02374_consen   81 EVQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLESGEYDLIVVDTPPTGHTLRLLSLPERLRWWLDRLLKL  160 (305)
T ss_dssp             HHHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCcHHHHHHHhHHHHHHHHHHHHHHH
Confidence              111       11223445566678999999999999999998899999999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCc
Q 017873          176 KNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDT  255 (365)
Q Consensus       176 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v  255 (365)
                      ++++.++.+++.+ .+.+ ....+.+++.+.++++++++++++|+||+.|+|++|++|+.+++.||+|+++.|+.+|+++
T Consensus       161 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~L~~~gi~v  238 (305)
T PF02374_consen  161 RRKIRSLARPLSG-LGLG-AVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTELKLYGIPV  238 (305)
T ss_dssp             HHCHHHHHHHHCH-SHCC-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-EE
T ss_pred             HHhhcchhhhhhc-cccc-ccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCcc
Confidence            9999888777654 2211 2344578899999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHhhcC
Q 017873          256 HNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVT  323 (365)
Q Consensus       256 ~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~l~~  323 (365)
                      .++|+||+ .|++...|++|+.|+..|+++++++.+.|++.+++.+|+++.||.|++.|+++++.||.
T Consensus       239 ~~vVvNrv-lp~~~~~c~~~~~r~~~Q~~~l~~i~~~f~~~~v~~vp~~~~ev~G~~~L~~~~~~L~~  305 (305)
T PF02374_consen  239 DAVVVNRV-LPEEEDDCPFCAARRKEQQKYLAEIEESFPDLPVVKVPLLPEEVRGLDALEALADHLYK  305 (305)
T ss_dssp             EEEEEEEE--TTCSTTSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEE--SS-S-SHHHHHHHHHHHH-
T ss_pred             CeEEEEcc-ccccccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCCCCCCHHHHHHHHHHhcC
Confidence            99999999 55545569999999999999999999999999999999999999999999999999873

...

>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.2e-48  Score=371.12  Aligned_cols=298  Identities=38%  Similarity=0.622  Sum_probs=263.5

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccc-cc-
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET-  104 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~~-  104 (365)
                      +++|+|++|||||||||+||++|.++|+.|+|||+|++||+||+++.|+.+.+.++..+.  +||++.++|+.... ++ 
T Consensus         1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~--~nL~a~eiD~~~~l~ey~   78 (322)
T COG0003           1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVG--PNLDALELDPEKALEEYW   78 (322)
T ss_pred             CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCchhhcC--CCCceeeecHHHHHHHHH
Confidence            368999999999999999999999999999999999999999999999999888888886  99999999999887 21 


Q ss_pred             ----------ccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHH
Q 017873          105 ----------GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMS  174 (365)
Q Consensus       105 ----------~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~  174 (365)
                                ....++.....+.....||++|.+.+.++.+.+.+.+||+|||||||++|++++|.+|+.+.||++++++
T Consensus        79 ~~v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TLRlL~lP~~~~~~~~~~~~  158 (322)
T COG0003          79 DEVKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLLSLPEVLGWYLEKLFK  158 (322)
T ss_pred             HHHHHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCCChHHHHHHhccHHHHHHHHHhhhh
Confidence                      1122334556677788999999999999999999989999999999999999999999999999999986


Q ss_pred             -HHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCC
Q 017873          175 -LKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEI  253 (365)
Q Consensus       175 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi  253 (365)
                       .++++...+..+..+.+..  .+.+.+++.++++++++..++..+.||..|.+++|++|+.+++.++.+++..|.++++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra~~~l~~~~i  236 (322)
T COG0003         159 PRRKRMVKALKSLSTAAGSP--LPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVERLSLYGI  236 (322)
T ss_pred             hHHHHHHHhhhhcccccCCc--CcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHHHHHHHHHHHHcCC
Confidence             5555544444444444443  3378899999999999999999999999999999999999999999999999999999


Q ss_pred             CcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHhhcCCCCCCCC
Q 017873          254 DTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTS  330 (365)
Q Consensus       254 ~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~l~~~~~~~~~  330 (365)
                      ++.++++|+++ |++ ..+++|+.|...|++++.++.+.|.+..+..+|+...++.|.+.+.++++.+++...|.+.
T Consensus       237 ~v~~vi~n~~~-p~~-~~~~~~~~~~~~q~~~l~~~~~~f~~~~v~~vp~~~ee~~g~~~l~~l~~~l~~~~~~~~~  311 (322)
T COG0003         237 PVDAVIVNKIL-PDE-ADQPFLEARRKIQQKYLKELEETFSDLAVVKVPLLAEEPVGLEALEKLGDLLYGDESPAPV  311 (322)
T ss_pred             chheeeeeccc-ccc-cccHHHHHHHHHHHHHHHHHHHhhcccceEEecccccccccHHHHHHHHHhccCCCCcccc
Confidence            99999999995 442 4566999999999999999999999999999999999999999999999999997777653

>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA)

Probab=100.00  E-value=3.9e-42  Score=320.19  Aligned_cols=241  Identities=48%  Similarity=0.798  Sum_probs=207.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccc-ccc--
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ETG--  105 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~~~--  105 (365)
                      +++|++||||+||||+|+|+|.++|+.|+||||||+|++++++++|+.+.+..+....+.+|+++.++|+...+ ++.  
T Consensus         1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~~   80 (254)
T cd00550           1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQE   80 (254)
T ss_pred             CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcccHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999986666666667899999999988766 110  


Q ss_pred             ------c---ccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHH
Q 017873          106 ------S---TEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLK  176 (365)
Q Consensus       106 ------~---~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~  176 (365)
                            .   ...+..+...... .||+.+.+.+.++.+.+++.+||+|||||||++++++++.+|+.+.+         
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~-~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPtg~tlrlL~lp~~l~~---------  150 (254)
T cd00550          81 VLEPIEANLLLEMLKGILEEELE-SPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSW---------  150 (254)
T ss_pred             HHHHHHhhccchhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHhHHHHHH---------
Confidence                  0   0111122222233 39999999999999999877899999999999999999999998754         


Q ss_pred             HhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcC
Q 017873          177 NKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTH  256 (365)
Q Consensus       177 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~  256 (365)
                                                            +.+.+.||..|.+++|++|+.+++.+++++++.|+.+|+++.
T Consensus       151 --------------------------------------~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~  192 (254)
T cd00550         151 --------------------------------------AREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVD  192 (254)
T ss_pred             --------------------------------------HHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCC
Confidence                                                  223577898999999999999999999999999999999999


Q ss_pred             eEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHH
Q 017873          257 NIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFS  318 (365)
Q Consensus       257 ~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~  318 (365)
                      |+|+|++ .++....|++|+.|...|+++++++.+.|++.+++++|+++.||.|+++|+.|+
T Consensus       193 gvV~N~v-~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~~vp~~~~e~~g~~~L~~~~  253 (254)
T cd00550         193 AVIVNQL-LPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVAKLPLLPEEVVGLEKLEQFA  253 (254)
T ss_pred             EEEEecC-cccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEeecCCCCCCCHHHHHHHh
Confidence            9999999 454334699999999999999999999999999999999999999999999886

This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.

>TIGR00345 arsA arsenite-activated ATPase (arsA)

Probab=100.00  E-value=1.4e-40  Score=314.41  Aligned_cols=270  Identities=41%  Similarity=0.655  Sum_probs=237.0

Q ss_pred             HHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccc-cccc--------ccCccch-
Q 017873           44 CSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ETGS--------TEGMDSL-  113 (365)
Q Consensus        44 ~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~~~~--------~~~~~~~-  113 (365)
                      +|+++|..+|+.|+|||+||+||+++++++||.+.+..|+.+.+.+|+++.++|+...+ ++..        ....... 
T Consensus         1 ~a~a~a~~~a~~g~~vllv~~Dp~~~l~~~~~~~~~~~~~~v~~~~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (284)
T TIGR00345         1 ISCATAIRLAEQGKKVLLVSTDPAHSLSDVFEQEIGHTPTKVTGVENLSAVEIDPQAALEEYRAKLVEQIKGNLPDGDML   80 (284)
T ss_pred             CHHHHHHHHHHCCCeEEEEECCCCCCHHHHhCCccCCCCeeccCCCCceEEEcCHHHHHHHHHHHHHHHHhhhccccccH
Confidence            58999999999999999999999999999999999989998888899999999998877 2111        0111111 


Q ss_pred             --hHHhhhcCCCHHHHHHHHHHHHHHHh--CCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHHhh
Q 017873          114 --FSELANAIPGIDEAMSFAEMLKLVQT--MDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRL  189 (365)
Q Consensus       114 --~~~~~~~~pg~~~~~~l~~l~~~l~~--~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~  189 (365)
                        ..+.....||++|.+.+.++.+.+.+  .+||+|||||||++|++++|.+|+.+.||++++++++++++++.+++   
T Consensus        81 ~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~~yD~iVvDtaPtghtLrlL~lP~~l~~~l~~~~~~~~~~~~~~~~~---  157 (284)
T TIGR00345        81 GDQLEGAALSPGIDEIAAFDEFLKHMTDAENEFDVVIFDTAPTGHTLRLLQLPEVLSSFLEKFIKIRSKLGPMLKLF---  157 (284)
T ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHHHHHhhccCCEEEECCCChHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence              12224467999999999999999876  68999999999999999999999999999999999999987766544   


Q ss_pred             hCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCc
Q 017873          190 FGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDED  269 (365)
Q Consensus       190 ~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~  269 (365)
                      .|.+   +.+++++.+.++++.++++.++|+||+.|+|++|++|+.+++.++.++++.|+..|+++.++|+|++. +. +
T Consensus       158 ~~~~---~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~-~~-~  232 (284)
T TIGR00345       158 MGAG---ESDEALEKLEELKEQIEAAREILSDPERTSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVL-PE-N  232 (284)
T ss_pred             cCCC---cchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCc-CC-C
Confidence            3332   44889999999999999999999999999999999999999999999999999999999999999994 44 2


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHhh
Q 017873          270 VESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHF  321 (365)
Q Consensus       270 ~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~l  321 (365)
                      ..|++|..|...|.++++++.+.|.+.+++.+|+++.||.|+++|+.+++.|
T Consensus       233 ~~~~~~~~r~~~q~~~L~~i~~~~~~~~~~~vp~~~~e~~G~~~L~~l~~~~  284 (284)
T TIGR00345       233 AQDEFCQARWELQQKYLKEIPEKFADLPVAEVPLQKEEMVGLEALKRLSKTL  284 (284)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCHHHHHHHHhhC
Confidence            4689999999999999999999999999999999999999999999998754

The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

Probab=99.96  E-value=8.1e-28  Score=218.97  Aligned_cols=207  Identities=45%  Similarity=0.660  Sum_probs=151.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCCh--------hhHhhcccCCCceeecCcCCceeeecCcccc
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL--------SDAFQQRFTKTPTLVNGFSNLYAMEVDPSVE  101 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l--------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~  101 (365)
                      +++++||||+||||+++++|.++|+.|+||++||+|+++++        +++++....    ..  ..+.+.........
T Consensus         1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~----~~--~~~~~~~~~~~~~~   74 (217)
T cd02035           1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDP----EI--APNLYREEVDATRR   74 (217)
T ss_pred             CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCCh----HH--HHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999854        333332000    00  00011111000000


Q ss_pred             ccccccc-CccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhh
Q 017873          102 EETGSTE-GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFG  180 (365)
Q Consensus       102 ~~~~~~~-~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~  180 (365)
                      .  .... .............|+..+.+.+.++.+.+++.+||||||||||+++.++++                     
T Consensus        75 ~--~~~~~~~~~~~~~~~~~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l---------------------  131 (217)
T cd02035          75 V--ERAWGGEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLL---------------------  131 (217)
T ss_pred             h--hhcccchhhhHHhHhccCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHH---------------------
Confidence            0  0000 001111223447799999999999999998855999999999987766654                     


Q ss_pred             hhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEE
Q 017873          181 GMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIII  260 (365)
Q Consensus       181 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVv  260 (365)
                                                        +...+.|+..+.+++|++|+.++..++.++++.++..|+++.++|+
T Consensus       132 ----------------------------------~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVl  177 (217)
T cd02035         132 ----------------------------------VRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVV  177 (217)
T ss_pred             ----------------------------------HHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEE
Confidence                                              0113556666899999999999999999999999999999999999


Q ss_pred             cCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q 017873          261 NQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITK  300 (365)
Q Consensus       261 N~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~  300 (365)
                      |++. +.....|++|..+...|+.++.++.+.|++.|++.
T Consensus       178 N~~~-~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~  216 (217)
T cd02035         178 NRVL-PAEVDDDPFLAARRQIQQKYLAEIEELFDDLPIVP  216 (217)
T ss_pred             eCCc-CcccCCCHHHHHHHHHHHHHHHHHHHHcCCCceec
Confidence            9994 44233688999999999999999999998877654

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.

>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=2.8e-25  Score=201.75  Aligned_cols=171  Identities=21%  Similarity=0.225  Sum_probs=129.2

Q ss_pred             hhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC-CCChhhHhhcccCC--------CceeecCcCCce
Q 017873           22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTK--------TPTLVNGFSNLY   92 (365)
Q Consensus        22 ~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~-~~~l~~~~~~~~~~--------~~~~~~~~~~l~   92 (365)
                      .+..-.++|++.||||||||||+|+|||++||+.|++|.++|+|- .+|+..++|.+...        .|+..  -.|+.
T Consensus        42 ~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~--~~~l~  119 (300)
T KOG3022|consen   42 NLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVV--NKNLK  119 (300)
T ss_pred             cccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCceeeecCCCceeeee--cCCeE
Confidence            444556789999999999999999999999999999999999994 59999999976321        11111  12333


Q ss_pred             eeecCcccccccccccCccchhH--HhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHH
Q 017873           93 AMEVDPSVEEETGSTEGMDSLFS--ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLD  170 (365)
Q Consensus        93 ~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~  170 (365)
                      ++.+              ..+..  +....|.|.....++.++++...+++.||+||||||+.+...+-           
T Consensus       120 ~mS~--------------gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls-----------  174 (300)
T KOG3022|consen  120 LMSM--------------GFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLS-----------  174 (300)
T ss_pred             EEEe--------------eeecCCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhhh-----------
Confidence            2221              11111  12335678887888999999999989999999999987653322           


Q ss_pred             HHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHh
Q 017873          171 KMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK  250 (365)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~  250 (365)
                                     +.   .                          .+  +..++.++||||...++.++.+-+..+++
T Consensus       175 ---------------~~---~--------------------------~~--~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K  208 (300)
T KOG3022|consen  175 ---------------LV---Q--------------------------FL--RESDGAVIVTTPQEVALQDVRKEIDFCRK  208 (300)
T ss_pred             ---------------ee---e--------------------------cc--cccCceEEEeCchhhhhHHHHhhhhhhhh
Confidence                           00   0                          01  11267899999999999999999999999


Q ss_pred             CCCCcCeEEEcCccC
Q 017873          251 FEIDTHNIIINQVLY  265 (365)
Q Consensus       251 ~gi~v~~vVvN~~~~  265 (365)
                      .++|+.|+|.||..+
T Consensus       209 ~~I~ilGvVENMs~f  223 (300)
T KOG3022|consen  209 AGIPILGVVENMSGF  223 (300)
T ss_pred             cCCceEEEEeccccc
Confidence            999999999999964

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=99.92  E-value=2e-24  Score=188.98  Aligned_cols=167  Identities=18%  Similarity=0.163  Sum_probs=119.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccccccccc
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTE  108 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  108 (365)
                      .|+|+|+||||||||+|+|||.++|+.|+||+|||+|++++....+...                               
T Consensus         1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~-------------------------------   49 (169)
T cd02037           1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRG-------------------------------   49 (169)
T ss_pred             CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhC-------------------------------
Confidence            3789999999999999999999999999999999999997532221000                               


Q ss_pred             CccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHHh
Q 017873          109 GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR  188 (365)
Q Consensus       109 ~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~~  188 (365)
                                   +...  ..+..+++.+...+||||||||||+.+...+.                             
T Consensus        50 -------------~~~~--~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~-----------------------------   85 (169)
T cd02037          50 -------------PMKM--GAIKQFLTDVDWGELDYLVIDMPPGTGDEHLT-----------------------------   85 (169)
T ss_pred             -------------cchH--HHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHH-----------------------------
Confidence                         0000  12334444444237999999999975432211                             


Q ss_pred             hhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCC
Q 017873          189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDE  268 (365)
Q Consensus       189 ~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~  268 (365)
                                                   .+.-...+.+++|++|+..++.++.++++.+++.++++.|+|+||+. +. 
T Consensus        86 -----------------------------~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~-~~-  134 (169)
T cd02037          86 -----------------------------LAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSY-FV-  134 (169)
T ss_pred             -----------------------------HHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCc-cc-
Confidence                                         00001135899999999999999999999999999999999999994 21 


Q ss_pred             ccchHHHHHHHHH-HHHHHHHHHhhcCCCcEEEecCC
Q 017873          269 DVESKLLRARMRM-QQKYLDQFYMLYDDFHITKLPLL  304 (365)
Q Consensus       269 ~~~~~~~~~~~~~-q~~~l~~i~~~~~~~~i~~vp~~  304 (365)
                         |..|+.+... +.+.++++.+.+....+..+|+-
T Consensus       135 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~  168 (169)
T cd02037         135 ---CPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLD  168 (169)
T ss_pred             ---CCCCCCcccccCCccHHHHHHHcCCCEEEeccCC
Confidence               2234443333 45677888888877677777864

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>PRK11670 antiporter inner membrane protein; Provisional

Probab=99.91  E-value=2.1e-23  Score=203.57  Aligned_cols=172  Identities=20%  Similarity=0.243  Sum_probs=108.9

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC-ChhhHhhcccCCCceeecCcCCceeeecCccccccc
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEET  104 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  104 (365)
                      ..+.|+|+||||||||||+|+|||.+||+.|+||+|||+|+++ +++.+||..... +...   .+....++.... +  
T Consensus       106 ~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~-~~~~---~~~~i~p~~~~g-~--  178 (369)
T PRK11670        106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQR-PTSP---DGTHMAPIMAHG-L--  178 (369)
T ss_pred             CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccC-Cccc---CCceeeeeeccC-c--
Confidence            3466789999999999999999999999999999999999984 466788864211 1100   111111110000 0  


Q ss_pred             ccccCccchhH-HhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhH
Q 017873          105 GSTEGMDSLFS-ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI  183 (365)
Q Consensus       105 ~~~~~~~~~~~-~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~  183 (365)
                       ....+..+.. .-...+.|......+.+++....+.+||||||||||+.+...+.                        
T Consensus       179 -~~~~~~~l~~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~gd~~l~------------------------  233 (369)
T PRK11670        179 -ATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLT------------------------  233 (369)
T ss_pred             -ccccHHHhcCcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCchHHHH------------------------
Confidence             0000000000 00011223222234455553222337999999999976542211                        


Q ss_pred             HHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       184 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                        +..                             ++   ..+.+++|++|+..++.++.+.++.+.+.++++.|+|+|++
T Consensus       234 --~~~-----------------------------l~---aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~  279 (369)
T PRK11670        234 --LAQ-----------------------------NI---PVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMS  279 (369)
T ss_pred             --Hhh-----------------------------hc---cCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCC
Confidence              000                             00   13578999999999999999999999999999999999998

>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.91  E-value=2e-23  Score=195.18  Aligned_cols=192  Identities=17%  Similarity=0.171  Sum_probs=132.7

Q ss_pred             hhhhhhhhcchhhHHhhhcC---CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC-CCChhhHhhcccCC-
Q 017873            6 QDQDQELEIPEGSVRNILEQ---DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTK-   80 (365)
Q Consensus         6 ~~~~~~~~~~~~~l~~~~~~---~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~-~~~l~~~~~~~~~~-   80 (365)
                      ....+.++.++.+++.....   ..+.|+++|+|||+||||+|+|||.++|+.|+||+++|+|- .++++.+|+.+... 
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g  112 (265)
T COG0489          33 STASEALRALRTNLKFAKVLRKGVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPG  112 (265)
T ss_pred             chhhhhhhhhhcchhhhhccccccceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCC
Confidence            34556677777754433333   46678899999999999999999999999999999999995 59999999985321 


Q ss_pred             CceeecCcCCceeeecCcccccccccccCccchhH-HhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhh
Q 017873           81 TPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFS-ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLL  159 (365)
Q Consensus        81 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l  159 (365)
                      .+....   |-...++....     ....++-++. .....+.++.....+.+++..+.+..||||||||||.....++.
T Consensus       113 ~~~~~~---g~~~~~~~~~~-----~~~~lsi~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~  184 (265)
T COG0489         113 LTELLA---GEALEPVIQHD-----GIKVLSILPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADAT  184 (265)
T ss_pred             cccccC---CCccccceecC-----ccceEEEEecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHH
Confidence            111111   10000000000     0011111110 11123446666678999999999866999999999977654433


Q ss_pred             hchHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHH
Q 017873          160 QFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLY  239 (365)
Q Consensus       160 ~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~  239 (365)
                      .                         +    .                          .+.    .++++|++|+.++..
T Consensus       185 i-------------------------~----~--------------------------~~~----~g~viVt~p~~~~~~  205 (265)
T COG0489         185 V-------------------------L----Q--------------------------RIP----DGVVIVTTPGKTALE  205 (265)
T ss_pred             H-------------------------H----h--------------------------ccC----CeEEEEeCCccchHH
Confidence            0                         0    0                          122    389999999999999


Q ss_pred             HHHHHHHHHHhCCCCcCeEEEcCcc
Q 017873          240 ETERLVQELTKFEIDTHNIIINQVL  264 (365)
Q Consensus       240 et~~~~~~L~~~gi~v~~vVvN~~~  264 (365)
                      +++++++.+++.++++.|||.|+..
T Consensus       206 ~v~ka~~~~~~~~~~vlGvv~Nm~~  230 (265)
T COG0489         206 DVKKAIDMLEKAGIPVLGVVENMSY  230 (265)
T ss_pred             HHHHHHHHHHhcCCceEEEEecCcc
Confidence            9999999999999999999999994

>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG

Probab=99.90  E-value=3.7e-23  Score=194.71  Aligned_cols=188  Identities=17%  Similarity=0.184  Sum_probs=124.9

Q ss_pred             hhhhhhhhcchhhHHhhh-cCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCce
Q 017873            6 QDQDQELEIPEGSVRNIL-EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPT   83 (365)
Q Consensus         6 ~~~~~~~~~~~~~l~~~~-~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~   83 (365)
                      +-..|+++.++.+|.... ++..+.|+|+|+|||+||||+|.|||.++|+.|+||++||+|++ ++++..|+.+...  .
T Consensus        81 ~~~~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~--g  158 (274)
T TIGR03029        81 SPQVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQR--G  158 (274)
T ss_pred             CHHHHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCC--C
Confidence            457799999999998654 45567788999999999999999999999999999999999976 6667777653211  1


Q ss_pred             eecCcCCceeeecCccccc-ccccccCccchhHHhhhcCCCHHHH---HHHHHHHHHHHhCCCcEEEEcCCCChhHHHhh
Q 017873           84 LVNGFSNLYAMEVDPSVEE-ETGSTEGMDSLFSELANAIPGIDEA---MSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLL  159 (365)
Q Consensus        84 ~~~~~~~l~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~pg~~~~---~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l  159 (365)
                          +..+...+ .+...+ ......++..+....  ..+...+.   ..+..+++.++. .||||||||||.....+..
T Consensus       159 ----l~~~l~~~-~~~~~i~~~~~~~~l~~lp~g~--~~~~~~~~~~~~~~~~~l~~l~~-~yD~ViiD~pp~~~~~d~~  230 (274)
T TIGR03029       159 ----LSDILAGR-SDLEVITHIPALENLSVLPAGA--IPPNPQELLARPAFTDLLNKVMG-DYDVVIVDTPSAEHSSDAQ  230 (274)
T ss_pred             ----HHHHhCCC-CCHHHeeecCCCCCEEEEeCcC--CCCCHHHHhCcHHHHHHHHHHHh-cCCEEEEeCCCcccccHHH
Confidence                11110000 000000 000011111111110  01111111   246777777776 7999999999964321111


Q ss_pred             hchHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHH
Q 017873          160 QFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLY  239 (365)
Q Consensus       160 ~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~  239 (365)
                                               .+.                              ..    .+.+++|++++.++..
T Consensus       231 -------------------------~~~------------------------------~~----~d~vilV~~~~~t~~~  251 (274)
T TIGR03029       231 -------------------------IVA------------------------------TR----ARGTLIVSRVNETRLH  251 (274)
T ss_pred             -------------------------HHH------------------------------Hh----CCeEEEEEECCCCCHH
Confidence                                     000                              01    2478999999999999


Q ss_pred             HHHHHHHHHHhCCCCcCeEEEcC
Q 017873          240 ETERLVQELTKFEIDTHNIIINQ  262 (365)
Q Consensus       240 et~~~~~~L~~~gi~v~~vVvN~  262 (365)
                      ++.++++.|+..|.++.|+|+|+
T Consensus       252 ~~~~~~~~l~~~~~~~~G~VlN~  274 (274)
T TIGR03029       252 ELTSLKEHLSGVGVRVVGAVLNQ  274 (274)
T ss_pred             HHHHHHHHHHhCCCCEEEEEeCC
Confidence            99999999999999999999996

The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=99.88  E-value=2.1e-22  Score=181.46  Aligned_cols=187  Identities=16%  Similarity=0.197  Sum_probs=120.1

Q ss_pred             hhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC-ChhhHhhcccCCCceeecCc
Q 017873           10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLSDAFQQRFTKTPTLVNGF   88 (365)
Q Consensus        10 ~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~-~l~~~~~~~~~~~~~~~~~~   88 (365)
                      |.++.++.+|...- .+++.|.|+|+|||+||||++++||.++|+.|+||++||+|++. +++..|+..... +    ++
T Consensus         1 ~~~~~l~~~l~~~~-~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~-~----~l   74 (204)
T TIGR01007         1 EYYNAIRTNIQFSG-AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKI-T----GL   74 (204)
T ss_pred             ChHHHHHHHHhhhc-CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCC-C----CH
Confidence            57889999998554 34777889999999999999999999999999999999999874 455566543210 0    11


Q ss_pred             CCceeeecCcccccccccccCccchhHHhhhcCCCHHH---HHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHH
Q 017873           89 SNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDE---AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTL  165 (365)
Q Consensus        89 ~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~---~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l  165 (365)
                      ..+.....+....+......++..+....  ..+....   ...+..+++.+++ +||||||||||........      
T Consensus        75 ~~~l~~~~~l~~~i~~~~~~~l~~l~~g~--~~~~~~~~l~~~~l~~~l~~l~~-~yD~ViiD~pp~~~~~~~~------  145 (204)
T TIGR01007        75 TNFLSGTTDLSDAICDTNIENLFVITSGP--VPPNPTELLQSSNFKTLIETLRK-YFDYIIIDTPPIGTVTDAA------  145 (204)
T ss_pred             HHHhcCCCCHHHhcccCCCCCEEEEeCCC--CCCCHHHHhCcHHHHHHHHHHHh-cCCEEEEeCCCccccchHH------
Confidence            11110011111111000001111111000  0111111   1346677777776 7999999999933211100      


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHH
Q 017873          166 EKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLV  245 (365)
Q Consensus       166 ~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~  245 (365)
                                         .+.                              -.    .+.+++|+.|+.++..++.+++
T Consensus       146 -------------------~~~------------------------------~~----~D~vilV~~~~~~~~~~~~~~~  172 (204)
T TIGR01007       146 -------------------IIA------------------------------RA----CDASILVTDAGEIKKRDVQKAK  172 (204)
T ss_pred             -------------------HHH------------------------------Hh----CCeEEEEEECCCCCHHHHHHHH
Confidence                               000                              01    2478999999999999999999


Q ss_pred             HHHHhCCCCcCeEEEcCcc
Q 017873          246 QELTKFEIDTHNIIINQVL  264 (365)
Q Consensus       246 ~~L~~~gi~v~~vVvN~~~  264 (365)
                      +.++..|+++.|+|+|++.
T Consensus       173 ~~l~~~~~~~~gvVlN~~~  191 (204)
T TIGR01007       173 EQLEQTGSNFLGVVLNKVD  191 (204)
T ss_pred             HHHHhCCCCEEEEEEeCcc
Confidence            9999999999999999993

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=99.87  E-value=4e-21  Score=174.27  Aligned_cols=199  Identities=20%  Similarity=0.253  Sum_probs=111.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHh-hcccCCCceeecCcCCce-eeecCccccccccc
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF-QQRFTKTPTLVNGFSNLY-AMEVDPSVEEETGS  106 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~-~~~~~~~~~~~~~~~~l~-~~~~d~~~~~~~~~  106 (365)
                      +|+++ |||||||||+|+|||.+||++|+|||+||+||+.+.+..+ +.+...  .....+.+.. ....+....+ ...
T Consensus         2 ~iav~-gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~   77 (212)
T cd02117           2 QIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPT--TILELAAEDGHVEDLELEDVI-FEG   77 (212)
T ss_pred             EEEEE-CCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCC--CHHHHHhhhCCcCCcChhHee-EeC
Confidence            45666 7999999999999999999999999999999998877665 322110  0000000000 0000111111 001


Q ss_pred             ccCccchhH-----HhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhh
Q 017873          107 TEGMDSLFS-----ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG  181 (365)
Q Consensus       107 ~~~~~~~~~-----~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~  181 (365)
                      ..+++-+..     ......++......+.+.+..+.+ +||||||||++....-.++                      
T Consensus        78 ~~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~yD~ilID~~g~~~~~~~~----------------------  134 (212)
T cd02117          78 FGGVKCVESGGPEPGVGCAGRGVITAVNLLEKEGFAED-DLDVVLYDVLGDVVCGGFA----------------------  134 (212)
T ss_pred             CCCcEEEeCCCCCCCcccCCcchhhHHHHHHhcccccc-CCCEEEEecCCCceecccc----------------------
Confidence            112111110     001111222111112223444444 7999999997643210110                      


Q ss_pred             hHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC----CCCcCe
Q 017873          182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF----EIDTHN  257 (365)
Q Consensus       182 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~----gi~v~~  257 (365)
                        .++                                 .....+.+++|++|+..++..+.++++.+++.    ++++.+
T Consensus       135 --~~l---------------------------------~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~g  179 (212)
T cd02117         135 --MPI---------------------------------REGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGG  179 (212)
T ss_pred             --ccc---------------------------------ccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEE
Confidence              000                                 00113578999999999999998888888764    677889


Q ss_pred             EEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecC
Q 017873          258 IIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPL  303 (365)
Q Consensus       258 vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~  303 (365)
                      +|+|++. +.             .+...++++.+.|....+..+|.
T Consensus       180 vv~N~~~-~~-------------~~~~~~~~~~~~~~~~vl~~IP~  211 (212)
T cd02117         180 LICNSRN-TD-------------RETELIDAFAERLGTQVIHFVPR  211 (212)
T ss_pred             EEEeCCC-Cc-------------cHHHHHHHHHHHcCCCEEEecCC
Confidence            9999993 21             23335677777776555555664

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]

Probab=99.87  E-value=2.4e-20  Score=173.37  Aligned_cols=166  Identities=25%  Similarity=0.288  Sum_probs=112.5

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHH-HHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCccccccc
Q 017873           27 SLKWVFVGGKGGVGKTTCSSIL-SILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEET  104 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~l-A~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  104 (365)
                      ++.|.|+||||||||||+|+|+ |..++..|++|++||+|.. +|++..||.....  +.   +.++...+.+.++.+ +
T Consensus         2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~--~~---l~dvL~~~~~~~Di~-~   75 (262)
T COG0455           2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKP--TT---LHDVLAGEASIEDII-Y   75 (262)
T ss_pred             CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCc--cc---HHHHHhCCCCHhHee-e
Confidence            4678899999999999999999 5555567788899999987 8899999976421  10   111111122222211 1


Q ss_pred             ccc-cCccchhHHhhhcCCCHHHH-----HHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHh
Q 017873          105 GST-EGMDSLFSELANAIPGIDEA-----MSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNK  178 (365)
Q Consensus       105 ~~~-~~~~~~~~~~~~~~pg~~~~-----~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~  178 (365)
                      ..+ .++..+.     ...+..+.     ..+..++..+.. .|||||+||||+.+.-.+.                   
T Consensus        76 ~~~~~gl~vip-----g~~~~~~~~~~~~~~~~~~~~~l~~-~~D~iliD~~aGl~~~~~~-------------------  130 (262)
T COG0455          76 ETPQDGLYVLP-----GGSGLEDLAKLDPEDLEDVIKELEE-LYDYILIDTGAGLSRDTLS-------------------  130 (262)
T ss_pred             ecCcCCEEEee-----CCCChHHHhhcCHHHHHHHHHHHHh-cCCEEEEeCCCCccHHHHH-------------------
Confidence            111 2222111     11222222     245567777777 5899999999977632111                   


Q ss_pred             hhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCe-
Q 017873          179 FGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHN-  257 (365)
Q Consensus       179 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~-  257 (365)
                            .                                ++.   .+.+++|++|+..++.++..+++.+...|++..+ 
T Consensus       131 ------~--------------------------------~~~---sd~~viVt~pe~~si~~A~~~i~~~~~~~~~~~~~  169 (262)
T COG0455         131 ------F--------------------------------ILS---SDELVIVTTPEPTSITDAYKTIKILSKLGLDLLGR  169 (262)
T ss_pred             ------H--------------------------------HHh---cCcEEEEeCCCcchHHHHHHHHHHHHHcCCccccc
Confidence                  0                                111   1578999999999999999999999999999988 


Q ss_pred             -EEEcCcc
Q 017873          258 -IIINQVL  264 (365)
Q Consensus       258 -vVvN~~~  264 (365)
                       +|+|++.
T Consensus       170 ~vV~N~v~  177 (262)
T COG0455         170 RVVLNRVR  177 (262)
T ss_pred             eEEEEecc
Confidence             9999994

>CHL00175 minD septum-site determining protein; Validated

Probab=99.87  E-value=3.2e-21  Score=182.15  Aligned_cols=172  Identities=19%  Similarity=0.178  Sum_probs=110.7

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCccccc-c
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-E  103 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~  103 (365)
                      .++.|+|+|+||||||||+|+|||.+|++.|+||++||+|++ ++++.+||..........    ++..........+ .
T Consensus        14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~----d~l~~~~~l~~~~~~   89 (281)
T CHL00175         14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAM----DVLEGECRLDQALIR   89 (281)
T ss_pred             CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHH----HHHcCCCChhhheee
Confidence            345788999999999999999999999999999999999997 889988886521111100    0000000000000 0


Q ss_pred             cccccCccchhHH--hhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhh
Q 017873          104 TGSTEGMDSLFSE--LANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG  181 (365)
Q Consensus       104 ~~~~~~~~~~~~~--~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~  181 (365)
                      .....++..+...  .......   ...+..+++.++..+||||||||||+.+.....                      
T Consensus        90 ~~~~~~l~~l~~~~~~~~~~~~---~~~l~~~l~~l~~~~yD~VIiDtpp~~~~~~~~----------------------  144 (281)
T CHL00175         90 DKRWKNLSLLAISKNRQRYNVT---RKNMNMLVDSLKNRGYDYILIDCPAGIDVGFIN----------------------  144 (281)
T ss_pred             cCCCCCeEEEeCCCchhhccCC---HHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHH----------------------
Confidence            0000111111000  0000001   124666777776546999999999976532211                      


Q ss_pred             hHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEc
Q 017873          182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN  261 (365)
Q Consensus       182 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN  261 (365)
                         .                                 +.  ..+.+++|++|+..++..+.++++.+.+.+.+..++|+|
T Consensus       145 ---~---------------------------------l~--~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN  186 (281)
T CHL00175        145 ---A---------------------------------IA--PAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVN  186 (281)
T ss_pred             ---H---------------------------------HH--hcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence               0                                 00  024789999999999999999999999999888899999


Q ss_pred             Ccc
Q 017873          262 QVL  264 (365)
Q Consensus       262 ~~~  264 (365)
                      ++.
T Consensus       187 ~~~  189 (281)
T CHL00175        187 RVR  189 (281)
T ss_pred             ccC
Confidence            993

>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase

Probab=99.86  E-value=1.6e-21  Score=176.30  Aligned_cols=185  Identities=16%  Similarity=0.144  Sum_probs=119.4

Q ss_pred             hhhhhhhcchhhHHhhh----c-CCCeEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCC-CChhhHhhcccC
Q 017873            7 DQDQELEIPEGSVRNIL----E-QDSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA-HNLSDAFQQRFT   79 (365)
Q Consensus         7 ~~~~~~~~~~~~l~~~~----~-~~~~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~-~~l~~~~~~~~~   79 (365)
                      ...++++.|+.+|....    . +.++.|.|+|+|||+||||+|+|||.+||+ .|+||||||+|++ ++++..|+.+..
T Consensus        10 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~   89 (207)
T TIGR03018        10 RIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAE   89 (207)
T ss_pred             HHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCC
Confidence            45788999999988644    3 345667899999999999999999999996 6999999999988 478877876522


Q ss_pred             CCceeecCcCCceeeec-CcccccccccccCccchhHHhhhcCCCHHH---HHHHHHHHHHHHhCCC--cEEEEcCCCCh
Q 017873           80 KTPTLVNGFSNLYAMEV-DPSVEEETGSTEGMDSLFSELANAIPGIDE---AMSFAEMLKLVQTMDY--SCIVFDTAPTG  153 (365)
Q Consensus        80 ~~~~~~~~~~~l~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~---~~~l~~l~~~l~~~~y--D~IiiDtpp~~  153 (365)
                      .  .    +..+..... +....+.-....++..+...  .......+   ...+..+++.+++ +|  |||||||||..
T Consensus        90 ~--~----l~~~l~~~~~~l~~~i~~~~~~~l~vl~~g--~~~~~~~~~~~~~~l~~~l~~l~~-~y~~D~IiiD~pp~~  160 (207)
T TIGR03018        90 P--G----LSDCLLDPVLDLADVLVPTNIGRLSLLPAG--RRHPNPTELLASQRMRSLLHELAR-RYPDRIIIIDTPPLL  160 (207)
T ss_pred             C--C----HHHHHcCCCCCHHHHhccCCCCCEEEEeCC--CCCCCHHHHhCcHHHHHHHHHHHh-hCCCCEEEEECCCCc
Confidence            1  0    000000000 00111100001111111100  00111111   1356777777776 57  99999999976


Q ss_pred             hHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecC
Q 017873          154 HTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIP  233 (365)
Q Consensus       154 ~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p  233 (365)
                      ..-...                         .+.                              ..    .+.+++|+.+
T Consensus       161 ~~~~~~-------------------------~l~------------------------------~~----aD~viiV~~~  181 (207)
T TIGR03018       161 VFSEAR-------------------------ALA------------------------------RL----VGQIVLVVEE  181 (207)
T ss_pred             chhHHH-------------------------HHH------------------------------Hh----CCEEEEEEEC
Confidence            421111                         000                              01    2478999999


Q ss_pred             CcchHHHHHHHHHHHHhCCCCcCeEEEc
Q 017873          234 EFLSLYETERLVQELTKFEIDTHNIIIN  261 (365)
Q Consensus       234 ~~~s~~et~~~~~~L~~~gi~v~~vVvN  261 (365)
                      +..+...+.++++.++  +.++.|+|+|
T Consensus       182 ~~~~~~~~~~~~~~l~--~~~~~G~v~N  207 (207)
T TIGR03018       182 GRTTQEAVKEALSALE--SCKVLGVVLN  207 (207)
T ss_pred             CCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence            9999999999999999  7899999998

Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.

>PRK13869 plasmid-partitioning protein RepA; Provisional

Probab=99.86  E-value=3.9e-20  Score=183.03  Aligned_cols=51  Identities=33%  Similarity=0.283  Sum_probs=47.7

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~   77 (365)
                      +++|+|+|.||||||||+|+|||..||.+|+|||+||+|||++++.+||..
T Consensus       121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~lt~~~g~~  171 (405)
T PRK13869        121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSALLGVL  171 (405)
T ss_pred             ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHcCCC
Confidence            356789999999999999999999999999999999999999999999864

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=99.86  E-value=1.1e-20  Score=175.03  Aligned_cols=168  Identities=20%  Similarity=0.224  Sum_probs=106.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCccccccccc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGS  106 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  106 (365)
                      +.|+|+|+||||||||+|+|||.+|+++|+||++||+|++ ++++.+||.+... ....    .+.....+....+ +..
T Consensus         1 ~ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~-~~~~----~~~~~~~~~~~~~-~~~   74 (251)
T TIGR01969         1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKP-VTLH----DVLAGEADIKDAI-YEG   74 (251)
T ss_pred             CEEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCC-CCHH----HHhcCCCCHHHhe-EeC
Confidence            3688999999999999999999999999999999999996 6888888765211 0100    0000000001111 001


Q ss_pred             ccCccchhHHh-hhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHH
Q 017873          107 TEGMDSLFSEL-ANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQ  185 (365)
Q Consensus       107 ~~~~~~~~~~~-~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~  185 (365)
                      ..++..+.... ...... .....+..++..+.. +||||||||||+.+.....                         .
T Consensus        75 ~~~l~~lp~~~~~~~~~~-~~~~~l~~~l~~l~~-~yD~VIiD~p~~~~~~~~~-------------------------~  127 (251)
T TIGR01969        75 PFGVKVIPAGVSLEGLRK-ADPDKLEDVLKEIID-DTDFLLIDAPAGLERDAVT-------------------------A  127 (251)
T ss_pred             CCCEEEEeCCCCHHHHhh-cCHHHHHHHHHHHHh-hCCEEEEeCCCccCHHHHH-------------------------H
Confidence            11111110000 000000 011245566666665 6999999999977532111                         0


Q ss_pred             HHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          186 MTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       186 ~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +                               ..    .+.+++|+.|+..++.++.++.+.+...++++.++|+|++
T Consensus       128 l-------------------------------~~----ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~  170 (251)
T TIGR01969       128 L-------------------------------AA----ADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRV  170 (251)
T ss_pred             H-------------------------------Hh----CCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECC
Confidence            0                               01    2478999999999999999998888888999899999999

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=99.86  E-value=8.8e-21  Score=178.52  Aligned_cols=174  Identities=19%  Similarity=0.239  Sum_probs=99.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHh-hcccCCCceeecCcCCceeeecCccccccccc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF-QQRFTKTPTLVNGFSNLYAMEVDPSVEEETGS  106 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  106 (365)
                      ++|+|+ |||||||||+|+|||.+||++|+||++||+||+++.+.++ |....  .+....+.+-.....+....+ ...
T Consensus         2 ~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~~--~~~~d~l~~~~~~~~~~~~~i-~~~   77 (273)
T PRK13232          2 RQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQ--KTVLDTLRSEGDEGVDLDVVM-QPG   77 (273)
T ss_pred             CEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCCC--CcHHHHHHhcCCCCCCHHHEE-EeC
Confidence            567788 9999999999999999999999999999999998888776 32211  110000000000000000000 000


Q ss_pred             ccCccchhH-----HhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhh
Q 017873          107 TEGMDSLFS-----ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG  181 (365)
Q Consensus       107 ~~~~~~~~~-----~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~  181 (365)
                      ..++..+..     .......+......+.+.+..+.. +|||||||||+....-.+. .                    
T Consensus        78 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~yD~vlID~~~~~~~~~~~-~--------------------  135 (273)
T PRK13232         78 FGDIKCVESGGPEPGVGCAGRGIITSIGLLENLGAYTD-DLDYVFYDVLGDVVCGGFA-M--------------------  135 (273)
T ss_pred             CCCeEEEeCCCCCCCCCCCCCchhHHHHHHHHcccccc-cCCEEEEecCCCeeECCEe-c--------------------
Confidence            011110000     000011111111124444444444 6999999998754210011 0                    


Q ss_pred             hHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC---CCCcCeE
Q 017873          182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF---EIDTHNI  258 (365)
Q Consensus       182 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~---gi~v~~v  258 (365)
                         +++                               +  ...+.+++|++|+..++..+.++++.++..   ++++.|+
T Consensus       136 ---~~a-------------------------------l--~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~Gi  179 (273)
T PRK13232        136 ---PIR-------------------------------E--GKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGI  179 (273)
T ss_pred             ---ccc-------------------------------c--cccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEE
Confidence               000                               0  013589999999999999999988888753   6788899


Q ss_pred             EEcCc
Q 017873          259 IINQV  263 (365)
Q Consensus       259 VvN~~  263 (365)
                      |+|+.
T Consensus       180 V~n~~  184 (273)
T PRK13232        180 ICNSR  184 (273)
T ss_pred             EEeCC
Confidence            99987

>PRK11519 tyrosine kinase; Provisional

Probab=99.85  E-value=8.3e-21  Score=200.56  Aligned_cols=190  Identities=17%  Similarity=0.217  Sum_probs=132.0

Q ss_pred             hhhhhhhhcchhhHHhhhc-CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCce
Q 017873            6 QDQDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPT   83 (365)
Q Consensus         6 ~~~~~~~~~~~~~l~~~~~-~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~   83 (365)
                      +...|+++.++++|+.... .+.+.|+|+|.+||+||||+|+|||..+|..|+||||||+|++ ++++..|+.+...   
T Consensus       504 s~~~Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~---  580 (719)
T PRK11519        504 DLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVN---  580 (719)
T ss_pred             CHHHHHHHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCC---
Confidence            3467999999999998544 4566778999999999999999999999999999999999987 6788888865221   


Q ss_pred             eecCcCCceeeecCcccccccccccCccchhHHhhhcCCCHHH---HHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhh
Q 017873           84 LVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDE---AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ  160 (365)
Q Consensus        84 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~---~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~  160 (365)
                         |+.++.....+....+......++..+..+  ...|+..+   ...+..+++.++. +||||||||||.....+.. 
T Consensus       581 ---gl~~~l~~~~~l~~~i~~~~~~~l~~lp~g--~~~~~~~ell~s~~~~~ll~~l~~-~yD~ViiDtpP~~~v~Da~-  653 (719)
T PRK11519        581 ---GLSDILIGQGDITTAAKPTSIANFDLIPRG--QVPPNPSELLMSERFAELVNWASK-NYDLVLIDTPPILAVTDAA-  653 (719)
T ss_pred             ---CHHHHhCCCCCHHHhecccCcCCEEEEeCC--CCCCCHHHHhhHHHHHHHHHHHHh-cCCEEEEeCCCcccchHHH-
Confidence               112221111111111100011222222111  11233333   2467777888876 7999999999965422211 


Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHH
Q 017873          161 FPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYE  240 (365)
Q Consensus       161 lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~e  240 (365)
                                              .++                              -+    .+.+++|+.++.++..+
T Consensus       654 ------------------------~l~------------------------------~~----~d~~l~Vvr~~~t~~~~  675 (719)
T PRK11519        654 ------------------------IVG------------------------------RH----VGTTLMVARYAVNTLKE  675 (719)
T ss_pred             ------------------------HHH------------------------------HH----CCeEEEEEeCCCCCHHH
Confidence                                    011                              12    24789999999999999


Q ss_pred             HHHHHHHHHhCCCCcCeEEEcCc
Q 017873          241 TERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       241 t~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ...+++.++..|+++.|+|+|++
T Consensus       676 ~~~~~~~l~~~~~~~~G~VlN~v  698 (719)
T PRK11519        676 VETSLSRFEQNGIPVKGVILNSI  698 (719)
T ss_pred             HHHHHHHHHhCCCCeEEEEEeCC
Confidence            99999999999999999999999

>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]

Probab=99.84  E-value=5.5e-21  Score=168.37  Aligned_cols=172  Identities=20%  Similarity=0.250  Sum_probs=111.2

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCcccccccc
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETG  105 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  105 (365)
                      ++.|+++||||||||||+++|++.+||++|+||++||+|-. .||.-++|.+...    +..+-++.-.+....+++  .
T Consensus         2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~Ri----VYd~vdVi~g~~~l~QAL--I   75 (272)
T COG2894           2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRI----VYDLVDVIEGEATLNQAL--I   75 (272)
T ss_pred             ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhccccee----eeeehhhhcCccchhhHh--h
Confidence            35788999999999999999999999999999999999977 8888888876321    111112211222222222  1


Q ss_pred             cccCccchhHHhhhcCC--CHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhH
Q 017873          106 STEGMDSLFSELANAIP--GIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI  183 (365)
Q Consensus       106 ~~~~~~~~~~~~~~~~p--g~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~  183 (365)
                      ....+++++--.++...  .....-.+.++++.++..+|||||+|||++...=-.+                        
T Consensus        76 kDKr~~nL~lLPAsQtrdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~~~------------------------  131 (272)
T COG2894          76 KDKRLENLFLLPASQTRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGFKN------------------------  131 (272)
T ss_pred             ccccCCceEecccccccCcccCCHHHHHHHHHHHHhcCCCEEEecCcchHHHHHHh------------------------
Confidence            11111111100001111  1111125667777777568999999999976531111                        


Q ss_pred             HHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCC----CCc---C
Q 017873          184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE----IDT---H  256 (365)
Q Consensus       184 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~g----i~v---~  256 (365)
                       .+                               ..    ....++||+||..|++++-|.+..|...+    ..-   .
T Consensus       132 -A~-------------------------------~~----Ad~AiVVtnPEvSsVRDsDRiiGlLesk~~rae~~~~~~~  175 (272)
T COG2894         132 -AV-------------------------------YF----ADEAIVVTNPEVSSVRDSDRIIGLLESKSRRAEIGEEPKE  175 (272)
T ss_pred             -hh-------------------------------hc----cceEEEEcCCCccccccchhheeehhcccchhhcCCcccc
Confidence             00                               01    24789999999999999999999998665    322   6


Q ss_pred             eEEEcCcc
Q 017873          257 NIIINQVL  264 (365)
Q Consensus       257 ~vVvN~~~  264 (365)
                      .+++||+.
T Consensus       176 ~llvnR~~  183 (272)
T COG2894         176 HLLLNRYR  183 (272)
T ss_pred             eEEEEccC
Confidence            79999993

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=99.84  E-value=1.2e-20  Score=201.04  Aligned_cols=190  Identities=15%  Similarity=0.127  Sum_probs=129.9

Q ss_pred             hhhhhhhhcchhhHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCce
Q 017873            6 QDQDQELEIPEGSVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPT   83 (365)
Q Consensus         6 ~~~~~~~~~~~~~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~   83 (365)
                      ....|+++.++.+|+.+..+. .+.|.|+|.|||+||||+|+|||..+|+.|+||||||+|++ ++++.+|+.....   
T Consensus       524 s~~~Ea~r~lr~~l~~~~~~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~---  600 (754)
T TIGR01005       524 PVAEEELRVKEEAVAEAKSVAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVS---  600 (754)
T ss_pred             CcchHHHHHHHHHHhhhccCCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccC---
Confidence            345899999999998877654 45677999999999999999999999999999999999988 7899999865221   


Q ss_pred             eecCcCCceeeecCcccccccccccCccchhHHhhhcCCCHHHH---HHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhh
Q 017873           84 LVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEA---MSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ  160 (365)
Q Consensus        84 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~---~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~  160 (365)
                         |+.++.....+....+......++..+....  ..++..+.   ..+..+++.++. +||||||||||.....+...
T Consensus       601 ---gl~~~l~~~~~~~~~i~~~~~~~l~~l~~g~--~~~~~~~ll~~~~~~~~l~~l~~-~yD~IiID~pp~~~~~d~~~  674 (754)
T TIGR01005       601 ---GLLDLLAGLRSLLLDLTASGAASLPMLDSGL--FPHGITELLASPAMFSLVIHARL-YSDCVVVDVGTADPVRDMRA  674 (754)
T ss_pred             ---ChHHHHcCCccHHHHhccCCCCCeeEecCCC--CCCCHHHHhccHHHHHHHHHHHh-hCCEEEEcCCCcchhHHHHH
Confidence               1111111111111111000111222111110  11222222   245667777776 79999999999765433220


Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHH
Q 017873          161 FPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYE  240 (365)
Q Consensus       161 lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~e  240 (365)
                                               +                                .  +..+.+++|+.++.++...
T Consensus       675 -------------------------l--------------------------------~--~~~D~vl~v~~~~~~~~~~  695 (754)
T TIGR01005       675 -------------------------A--------------------------------A--RLAIIMLLVTAYDRVVVEC  695 (754)
T ss_pred             -------------------------h--------------------------------h--hhCCeEEEEEEeCceeHHH
Confidence                                     0                                0  1134788999999999999


Q ss_pred             HHHHHHHHHhCCCCcCeEEEcCc
Q 017873          241 TERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       241 t~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.++++.++..|.++.|+|+|++
T Consensus       696 ~~~~~~~l~~~~~~~~GvvlN~~  718 (754)
T TIGR01005       696 GRADAQGISRLNGEVTGVFLNML  718 (754)
T ss_pred             HHHHHHHHHhcCCceEEEEecCC
Confidence            99999999999999999999999

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=99.84  E-value=2.3e-19  Score=164.69  Aligned_cols=143  Identities=18%  Similarity=0.153  Sum_probs=97.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCcccccccccc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST  107 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  107 (365)
                      +.|+|+|.||||||||+|.|||.+++++|+||++||+||+++++.|++.......     .+...               
T Consensus         2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~~~~~~~-----~~~~~---------------   61 (231)
T PRK13849          2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNT-----WDPAC---------------   61 (231)
T ss_pred             eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHhhccccC-----CCccc---------------
Confidence            5678999999999999999999999999999999999999999988874321100     00000               


Q ss_pred             cCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHH
Q 017873          108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMT  187 (365)
Q Consensus       108 ~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~  187 (365)
                              ..    ....+...+...++.+...+||||||||||+.+.+...                            
T Consensus        62 --------~~----~~~~~~~~l~~~l~~~~~~~yD~iiID~pp~~~~~~~~----------------------------  101 (231)
T PRK13849         62 --------EV----YAADELPLLEAAYEDAELQGFDYALADTHGGSSELNNT----------------------------  101 (231)
T ss_pred             --------ee----cCCCHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHH----------------------------
Confidence                    00    00011123444555554347999999999976532211                            


Q ss_pred             hhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHh------CCCCcCeEEEc
Q 017873          188 RLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK------FEIDTHNIIIN  261 (365)
Q Consensus       188 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~------~gi~v~~vVvN  261 (365)
                                                    .+.-  .+-+++.+.|+..++..+.+.+..+.+      .+++. .+++|
T Consensus       102 ------------------------------al~~--aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~-~iv~~  148 (231)
T PRK13849        102 ------------------------------IIAS--SNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPT-AILRQ  148 (231)
T ss_pred             ------------------------------HHHH--CCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCe-EEEEE
Confidence                                          0000  246788999999999888888766653      25554 49999


Q ss_pred             Cc
Q 017873          262 QV  263 (365)
Q Consensus       262 ~~  263 (365)
                      ++
T Consensus       149 ~~  150 (231)
T PRK13849        149 RV  150 (231)
T ss_pred             ec
Confidence            98

>PHA02518 ParA-like protein; Provisional

Probab=99.84  E-value=3.5e-20  Score=167.20  Aligned_cols=138  Identities=22%  Similarity=0.282  Sum_probs=98.1

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCcccccccccc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST  107 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  107 (365)
                      +.|+|+|.||||||||+|+|||.+|+++|+||++||+||+.+++.|++......       +.+                
T Consensus         1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~~~~~-------~~i----------------   57 (211)
T PHA02518          1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEGE-------PLI----------------   57 (211)
T ss_pred             CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhcccCC-------CCC----------------
Confidence            367899999999999999999999999999999999999999999887432110       000                


Q ss_pred             cCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHH
Q 017873          108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMT  187 (365)
Q Consensus       108 ~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~  187 (365)
                                    |.......+...+..+.. .||||||||||+.+.+...                            
T Consensus        58 --------------~~~~~~~~~~~~l~~~~~-~~d~viiD~p~~~~~~~~~----------------------------   94 (211)
T PHA02518         58 --------------PVVRMGKSIRADLPKVAS-GYDYVVVDGAPQDSELARA----------------------------   94 (211)
T ss_pred             --------------chhhccHHHHHHHHHHhc-cCCEEEEeCCCCccHHHHH----------------------------
Confidence                          000000123344444555 6999999999976532111                            


Q ss_pred             hhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC-----CCCcCeEEEcC
Q 017873          188 RLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF-----EIDTHNIIINQ  262 (365)
Q Consensus       188 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~-----gi~v~~vVvN~  262 (365)
                                                    .+.  ..+.+++++.|+..++..+.++.+.++..     +++..++|.|+
T Consensus        95 ------------------------------~l~--~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~  142 (211)
T PHA02518         95 ------------------------------ALR--IADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISR  142 (211)
T ss_pred             ------------------------------HHH--HCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEec
Confidence                                          011  02578999999999998888887777653     56667788888


Q ss_pred             c
Q 017873          263 V  263 (365)
Q Consensus       263 ~  263 (365)
                      .
T Consensus       143 ~  143 (211)
T PHA02518        143 A  143 (211)
T ss_pred             c
Confidence            7

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=99.84  E-value=1.4e-20  Score=199.06  Aligned_cols=190  Identities=18%  Similarity=0.185  Sum_probs=131.3

Q ss_pred             hhhhhhhhcchhhHHhhhc-CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCce
Q 017873            6 QDQDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPT   83 (365)
Q Consensus         6 ~~~~~~~~~~~~~l~~~~~-~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~   83 (365)
                      +...|.++.++++|+.... .+.+.|+|+|.+||+||||+|+|||.++|..|+||||||+|++ ++++.+|+.....   
T Consensus       509 s~~~Ea~r~lrt~l~~~~~~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~---  585 (726)
T PRK09841        509 DSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEH---  585 (726)
T ss_pred             CHHHHHHHHHHHHhhhhccCCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCC---
Confidence            3457899999999998554 5566788999999999999999999999999999999999988 6788888754211   


Q ss_pred             eecCcCCceeeecCcccccccccccCccchhHHhhhcCCCHHHH---HHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhh
Q 017873           84 LVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEA---MSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ  160 (365)
Q Consensus        84 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~---~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~  160 (365)
                         |+.++.....+....+......+++.+...  ...+...+.   ..+..+++.++. +||||||||||....-+.. 
T Consensus       586 ---gl~~~l~~~~~~~~~i~~~~~~~l~vl~~g--~~~~~p~ell~~~~~~~ll~~l~~-~yD~IIIDtPP~~~~~Da~-  658 (726)
T PRK09841        586 ---GLSEYLAGKDELNKVIQHFGKGGFDVITRG--QVPPNPSELLMRDRMRQLLEWAND-HYDLVIVDTPPMLAVSDAA-  658 (726)
T ss_pred             ---CHHHHhCCCCCHHHheeccCCCCEEEEeCC--CCCCCHHHHhCcHHHHHHHHHHHh-cCCEEEEeCCCccccchHH-
Confidence               122222222222222100011122222111  112233332   357777887777 7999999999965432211 


Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHH
Q 017873          161 FPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYE  240 (365)
Q Consensus       161 lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~e  240 (365)
                           .                   ++                              .+    .+.+++|+.++.++..+
T Consensus       659 -----~-------------------la------------------------------~~----ad~~llVvr~~~t~~~~  680 (726)
T PRK09841        659 -----V-------------------VG------------------------------RS----VGTSLLVARFGLNTAKE  680 (726)
T ss_pred             -----H-------------------HH------------------------------Hh----CCeEEEEEeCCCCCHHH
Confidence                 0                   00                              12    24789999999999999


Q ss_pred             HHHHHHHHHhCCCCcCeEEEcCc
Q 017873          241 TERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       241 t~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.++++.|...|.++.|+|+|++
T Consensus       681 ~~~~~~~l~~~~~~~~G~VlN~~  703 (726)
T PRK09841        681 VSLSMQRLEQAGVNIKGAILNGV  703 (726)
T ss_pred             HHHHHHHHHhCCCceEEEEEeCc
Confidence            99999999999999999999999

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=99.84  E-value=4e-20  Score=172.13  Aligned_cols=172  Identities=19%  Similarity=0.217  Sum_probs=108.4

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCccccc-cc
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET  104 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~~  104 (365)
                      ++.|.|+|+||||||||+|+|||.++++.|+||++||+|++ ++++.+||.+........    ++.....+....+ ..
T Consensus         1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~----~~~~~~~~~~~~i~~~   76 (261)
T TIGR01968         1 ARVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLV----DVVEGECRLQQALIKD   76 (261)
T ss_pred             CeEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHH----HHhcCcCcHHHHhhcC
Confidence            35788999999999999999999999999999999999997 888888876422110000    0000000000000 00


Q ss_pred             ccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHH
Q 017873          105 GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMIN  184 (365)
Q Consensus       105 ~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~  184 (365)
                      ....++..+...... .........+..+++.+.+ .||||||||||+.+.....                         
T Consensus        77 ~~~~~l~~l~~~~~~-~~~~~~~~~l~~~l~~l~~-~~D~viiD~p~~~~~~~~~-------------------------  129 (261)
T TIGR01968        77 KRLKNLYLLPASQTR-DKDAVTPEQMKKLVNELKE-EFDYVIIDCPAGIESGFRN-------------------------  129 (261)
T ss_pred             CCCCCeEEEeCCCch-hhhhCCHHHHHHHHHHHHH-hCCEEEEeCCCCcCHHHHH-------------------------
Confidence            000111111000000 0000011245666777776 6999999999976531110                         


Q ss_pred             HHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCcc
Q 017873          185 QMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL  264 (365)
Q Consensus       185 ~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~  264 (365)
                                                       .+.  ..+.+++|++|+..++..+.++++.+...+....++|+|++.
T Consensus       130 ---------------------------------~l~--~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~  174 (261)
T TIGR01968       130 ---------------------------------AVA--PADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLR  174 (261)
T ss_pred             ---------------------------------HHH--hCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcC
Confidence                                             000  024789999999999999999999999988767789999983

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>TIGR03453 partition_RepA plasmid partitioning protein RepA

Probab=99.84  E-value=2.2e-19  Score=177.14  Aligned_cols=52  Identities=35%  Similarity=0.330  Sum_probs=48.1

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~   77 (365)
                      ++++|+|+|.||||||||+|+|||.+||+.|+|||+||+||+++++.+||..
T Consensus       103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ls~~~g~~  154 (387)
T TIGR03453       103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQASLSALFGYQ  154 (387)
T ss_pred             CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHcCCC
Confidence            3466789999999999999999999999999999999999999999999864

Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=99.83  E-value=2.6e-19  Score=165.43  Aligned_cols=51  Identities=37%  Similarity=0.433  Sum_probs=47.3

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhccc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRF   78 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~   78 (365)
                      +.|+|+|+||||||||+|+|||.+||++|+|||+||+|++++++..||.+.
T Consensus         2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~   52 (246)
T TIGR03371         2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDW   52 (246)
T ss_pred             cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCC
Confidence            467899999999999999999999999999999999999999998888653

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PRK13235 nifH nitrogenase reductase; Reviewed

Probab=99.83  E-value=4.2e-20  Score=174.05  Aligned_cols=47  Identities=30%  Similarity=0.449  Sum_probs=43.2

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhh
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ   75 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~   75 (365)
                      ++|+|+ |||||||||+|+|||.+||++|+|||+||+|||++.+.++.
T Consensus         2 ~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~   48 (274)
T PRK13235          2 RKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLL   48 (274)
T ss_pred             CEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCccccccccc
Confidence            467788 89999999999999999999999999999999999888773

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=99.83  E-value=9.5e-20  Score=170.79  Aligned_cols=48  Identities=33%  Similarity=0.514  Sum_probs=43.2

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ   76 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~   76 (365)
                      ++|+|+ |||||||||+|+|||.+||++|+||++||+||+.+++.+++.
T Consensus         2 ~~iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~   49 (270)
T cd02040           2 RQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLG   49 (270)
T ss_pred             cEEEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcC
Confidence            456677 799999999999999999999999999999999998877653

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=99.83  E-value=3.1e-19  Score=157.37  Aligned_cols=148  Identities=22%  Similarity=0.257  Sum_probs=97.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCcccccccccc
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST  107 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  107 (365)
                      +|+|+|+|||+||||+|+|||.++    +||+|||+|++ ++++.+|+.+.....       .... .. .....     
T Consensus         1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~~~-------~~~~-~~-~~~~~-----   62 (179)
T cd03110           1 QIAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEE-------DFIV-GG-KKAVI-----   62 (179)
T ss_pred             CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCccccc-------ccee-cC-CceEE-----
Confidence            478999999999999999999999    89999999987 889999987632110       0000 00 00000     


Q ss_pred             cCccchhHHhhhcCCCHHHHHHHHHHHHHH----HhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhH
Q 017873          108 EGMDSLFSELANAIPGIDEAMSFAEMLKLV----QTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI  183 (365)
Q Consensus       108 ~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l----~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~  183 (365)
                         +    ......+|.. ...+..+.+.+    ...+||||||||||+.+.....                        
T Consensus        63 ---~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~------------------------  110 (179)
T cd03110          63 ---D----PELCISCGLC-GKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIA------------------------  110 (179)
T ss_pred             ---c----hhhhccccch-HHHHHHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHH------------------------
Confidence               0    0000001110 11122222222    2247999999999976531100                        


Q ss_pred             HHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       184 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                                                        .+..  .+.+++|+.|+..++..+.++++.++..++++ ++|+|++
T Consensus       111 ----------------------------------~l~~--aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~-~vV~N~~  153 (179)
T cd03110         111 ----------------------------------SLTG--ADAALLVTEPTPSGLHDLERAVELVRHFGIPV-GVVINKY  153 (179)
T ss_pred             ----------------------------------HHHc--CCEEEEEecCCcccHHHHHHHHHHHHHcCCCE-EEEEeCC
Confidence                                              0111  35789999999999999999999999999886 7999999

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=99.83  E-value=7.3e-20  Score=171.68  Aligned_cols=48  Identities=40%  Similarity=0.547  Sum_probs=43.3

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ   76 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~   76 (365)
                      |+|+|+ |||||||||+|+|||.+||++|+|||+||+||+.+++..++.
T Consensus         1 ~~i~v~-gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~   48 (267)
T cd02032           1 MVLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTG   48 (267)
T ss_pred             CEEEEe-cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccC
Confidence            456666 799999999999999999999999999999999998887764

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>PRK13705 plasmid-partitioning protein SopA; Provisional

Probab=99.82  E-value=7e-19  Score=173.08  Aligned_cols=52  Identities=29%  Similarity=0.126  Sum_probs=47.6

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC-CCCCChhhHhhcc
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST-DPAHNLSDAFQQR   77 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~-D~~~~l~~~~~~~   77 (365)
                      +.++|+|+|.||||||||+|+|||.+||.+|+|||+||+ |||++++.+||..
T Consensus       105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nlt~~~g~~  157 (388)
T PRK13705        105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWV  157 (388)
T ss_pred             CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCchhhhcCcC
Confidence            446678999999999999999999999999999999996 9999999988764

>PRK13233 nifH nitrogenase reductase; Reviewed

Probab=99.82  E-value=1.5e-19  Score=170.32  Aligned_cols=48  Identities=27%  Similarity=0.371  Sum_probs=42.8

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCCCChhhH-hhc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAHNLSDA-FQQ   76 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~~~l~~~-~~~   76 (365)
                      ++|+|+ +||||||||+|+|||.+||+ .|+||||||+|||++.+.+ +|.
T Consensus         3 ~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~   52 (275)
T PRK13233          3 RKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGG   52 (275)
T ss_pred             eEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCC
Confidence            466788 89999999999999999997 6999999999999998876 453

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=99.82  E-value=9.6e-20  Score=172.02  Aligned_cols=48  Identities=33%  Similarity=0.565  Sum_probs=43.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ   76 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~   76 (365)
                      ++|+|+ |||||||||+|+|||.+||++|+||||||+||++|++.+|+.
T Consensus         2 ~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~   49 (279)
T PRK13230          2 RKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVG   49 (279)
T ss_pred             cEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccC
Confidence            456666 899999999999999999999999999999999999988863

>PHA02519 plasmid partition protein SopA; Reviewed

Probab=99.82  E-value=6e-19  Score=173.29  Aligned_cols=51  Identities=27%  Similarity=0.225  Sum_probs=47.1

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC-CCCCChhhHhhcc
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST-DPAHNLSDAFQQR   77 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~-D~~~~l~~~~~~~   77 (365)
                      .++|+|+|.||||||||+|+|||..||.+|+|||+||+ |||+|++.+||..
T Consensus       106 ~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt~~~g~~  157 (387)
T PHA02519        106 PVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTASMYHGYV  157 (387)
T ss_pred             ceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcccccCcC
Confidence            45677999999999999999999999999999999996 9999999988864

>PRK10818 cell division inhibitor MinD; Provisional

Probab=99.82  E-value=3.8e-19  Score=166.98  Aligned_cols=172  Identities=22%  Similarity=0.214  Sum_probs=104.9

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCccccc-cc
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET  104 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~~  104 (365)
                      ++.|+|+|+||||||||+|+|||.+++++|+||++||+|++ ++++.+||.+........    +......+....+ ..
T Consensus         2 ~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~----~~~~~~~~~~~~~~~~   77 (270)
T PRK10818          2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFV----NVIQGDATLNQALIKD   77 (270)
T ss_pred             ceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHH----HHhcCCCcHHHhcccc
Confidence            35788999999999999999999999999999999999996 789888886532110000    0000000000000 00


Q ss_pred             ccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHH
Q 017873          105 GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMIN  184 (365)
Q Consensus       105 ~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~  184 (365)
                      ....++..+..... ..........+.++++.++...||||||||||+.+......                        
T Consensus        78 ~~~~~~~~lp~~~~-~~~~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~~~~------------------------  132 (270)
T PRK10818         78 KRTENLYILPASQT-RDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMA------------------------  132 (270)
T ss_pred             CCcCCEEEecCCCC-cchhhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccHHHHHH------------------------
Confidence            00111111110000 00000011234566666654469999999999876433220                        


Q ss_pred             HHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC-------CCCc-C
Q 017873          185 QMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF-------EIDT-H  256 (365)
Q Consensus       185 ~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~-------gi~v-~  256 (365)
                                                        +.  ..+.+++|++|+..++..+.++++.+...       +.++ .
T Consensus       133 ----------------------------------l~--~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~  176 (270)
T PRK10818        133 ----------------------------------LY--FADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKE  176 (270)
T ss_pred             ----------------------------------HH--hCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccce
Confidence                                              00  13578999999999999999999998632       1232 4


Q ss_pred             eEEEcCc
Q 017873          257 NIIINQV  263 (365)
Q Consensus       257 ~vVvN~~  263 (365)
                      ++|+|++
T Consensus       177 ~vv~n~~  183 (270)
T PRK10818        177 HLLLTRY  183 (270)
T ss_pred             EEEEecc
Confidence            7899998

>PRK13236 nitrogenase reductase; Reviewed

Probab=99.82  E-value=1.1e-19  Score=173.00  Aligned_cols=48  Identities=29%  Similarity=0.470  Sum_probs=42.2

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhh
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ   75 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~   75 (365)
                      ++++.++|||||||||+|+|||.+||++|+|||+||+|++++...+|.
T Consensus         6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~   53 (296)
T PRK13236          6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLML   53 (296)
T ss_pred             ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhc
Confidence            355544999999999999999999999999999999999987777664

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=99.82  E-value=2.5e-19  Score=169.97  Aligned_cols=47  Identities=40%  Similarity=0.557  Sum_probs=41.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhh
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ   75 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~   75 (365)
                      |+|+| +|||||||||+|+|||.+||++|+|||+||+|||++++.+++
T Consensus         1 m~ia~-~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~   47 (290)
T CHL00072          1 MKLAV-YGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLT   47 (290)
T ss_pred             CeEEE-ECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCccccccc
Confidence            34444 569999999999999999999999999999999999988773

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=99.82  E-value=3.5e-19  Score=167.26  Aligned_cols=48  Identities=40%  Similarity=0.541  Sum_probs=43.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ   76 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~   76 (365)
                      ++|+|+ +||||||||+|+|||.+||++|+|||+||+||+.+++.+++.
T Consensus         3 ~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~   50 (270)
T PRK13185          3 LVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTG   50 (270)
T ss_pred             eEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcC
Confidence            455666 799999999999999999999999999999999999988864

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=99.82  E-value=5.3e-20  Score=172.68  Aligned_cols=47  Identities=38%  Similarity=0.574  Sum_probs=43.3

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhh
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ   75 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~   75 (365)
                      |+|+|. |||||||||+|+|||.+||++|+|||+||+||+.+++..|+
T Consensus         1 ~~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~~~l~   47 (268)
T TIGR01281         1 MILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDSTFTLT   47 (268)
T ss_pred             CEEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccccceec
Confidence            456677 89999999999999999999999999999999999998886

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>PRK13234 nifH nitrogenase reductase; Reviewed

Probab=99.82  E-value=2.7e-19  Score=170.23  Aligned_cols=49  Identities=31%  Similarity=0.466  Sum_probs=43.3

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhh
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ   75 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~   75 (365)
                      ++++|+|+ |||||||||+++|||.+|++.|+|||+||+||+.+.+..++
T Consensus         3 ~~~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~   51 (295)
T PRK13234          3 KLRQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLIL   51 (295)
T ss_pred             cceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccc
Confidence            44566675 99999999999999999999999999999999988877664

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=99.82  E-value=4.2e-19  Score=155.75  Aligned_cols=123  Identities=27%  Similarity=0.345  Sum_probs=93.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCcccccccccc
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST  107 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  107 (365)
                      .|+|+|+|||+||||+|+|||.+++++|+||++||+|++ ++++.+++.+....       .++                
T Consensus         1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~-------~~~----------------   57 (179)
T cd02036           1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVV-------YTL----------------   57 (179)
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCC-------cch----------------
Confidence            367999999999999999999999999999999999996 77777665431100       000                


Q ss_pred             cCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHH
Q 017873          108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMT  187 (365)
Q Consensus       108 ~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~  187 (365)
                                ....++                   |||||||||+.+.....                            
T Consensus        58 ----------~~~~~~-------------------d~viiD~p~~~~~~~~~----------------------------   80 (179)
T cd02036          58 ----------HDVLAG-------------------DYILIDSPAGIERGFIT----------------------------   80 (179)
T ss_pred             ----------hhcccC-------------------CEEEEECCCCCcHHHHH----------------------------
Confidence                      000011                   99999999976532110                            


Q ss_pred             hhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          188 RLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       188 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                                                    .+.  ..+.+++|+.|+..++..+.++++.++..+.+..++|+|++
T Consensus        81 ------------------------------~l~--~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~  124 (179)
T cd02036          81 ------------------------------AIA--PADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRV  124 (179)
T ss_pred             ------------------------------HHH--hCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCC
Confidence                                          000  02468999999999999999999999998888899999999

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>TIGR01287 nifH nitrogenase iron protein

Probab=99.81  E-value=7.9e-19  Score=165.37  Aligned_cols=46  Identities=30%  Similarity=0.522  Sum_probs=41.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhh
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ   75 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~   75 (365)
                      .|+| +|||||||||+|+|||.+||++|+||++||+|||.+.+..+.
T Consensus         2 ~ia~-~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~   47 (275)
T TIGR01287         2 QIAI-YGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLL   47 (275)
T ss_pred             eeEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCcccccc
Confidence            3445 589999999999999999999999999999999999887664

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>PRK10037 cell division protein; Provisional

Probab=99.80  E-value=3.7e-19  Score=165.39  Aligned_cols=50  Identities=28%  Similarity=0.375  Sum_probs=46.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~   77 (365)
                      +.|.|.|.||||||||+|+|||.+||++|+||||||+||+.+++..||..
T Consensus         2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~~s~~~g~~   51 (250)
T PRK10037          2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVD   51 (250)
T ss_pred             cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhhHHHHhCCC
Confidence            56789999999999999999999999999999999999999999888864

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=99.79  E-value=8.7e-19  Score=155.76  Aligned_cols=153  Identities=24%  Similarity=0.262  Sum_probs=104.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc---cCCCceeecCcCCceeeecCccccccccc
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR---FTKTPTLVNGFSNLYAMEVDPSVEEETGS  106 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  106 (365)
                      |+|+|+|||+||||+|++||.+++++|+||++||+|++.+...++...   .....      .....            .
T Consensus         1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~------~~~~~------------~   62 (195)
T PF01656_consen    1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGL------ENANA------------I   62 (195)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSS------HGHHC------------H
T ss_pred             CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccc------eehhh------------h
Confidence            689999999999999999999999999999999999998887776622   00000      00000            0


Q ss_pred             ccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHH
Q 017873          107 TEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM  186 (365)
Q Consensus       107 ~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~  186 (365)
                      ...++.....  ....+ .....+.++++.+....||||||||||+.+.....                           
T Consensus        63 ~~~~~~~~~~--~~~~~-~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~~~~---------------------------  112 (195)
T PF01656_consen   63 LKNFESQDIY--QGEEY-LDPELLREILESLIKSDYDYIIIDTPPGLSDPVRN---------------------------  112 (195)
T ss_dssp             HESCCHHHHH--HHCHC-HHHHHHHHHHHHHHHTTSSEEEEEECSSSSHHHHH---------------------------
T ss_pred             hhccchhhhh--hhhhh-hHHHHHHHHHHHhhhccccceeecccccccHHHHH---------------------------
Confidence            0000000000  00001 23346777777766545999999999977643110                           


Q ss_pred             HhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCC--CCcCeEEEcCc
Q 017873          187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE--IDTHNIIINQV  263 (365)
Q Consensus       187 ~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~g--i~v~~vVvN~~  263 (365)
                                                     .+..  .+.+++|+.|+..++..+.++++.++..+  ++..++|+|++
T Consensus       113 -------------------------------~l~~--ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v  158 (195)
T PF01656_consen  113 -------------------------------ALAA--ADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRV  158 (195)
T ss_dssp             -------------------------------HHHT--SSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEE
T ss_pred             -------------------------------HHHh--CceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeee
Confidence                                           0111  35789999999999999999999999888  55789999999

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.79  E-value=4.2e-18  Score=158.93  Aligned_cols=53  Identities=34%  Similarity=0.357  Sum_probs=48.2

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCCCChhhHhhcccC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPAHNLSDAFQQRFT   79 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~~~l~~~~~~~~~   79 (365)
                      ++.|.|+|.||||||||+|.|||.+|| ..|+|||+||+|||++++.+||....
T Consensus         2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~t~~~~~~~~   55 (259)
T COG1192           2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRPD   55 (259)
T ss_pred             CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcchhhHhcCCCcc
Confidence            467889999999999999999999999 66699999999999999999998643

>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein

Probab=99.79  E-value=3.6e-18  Score=164.53  Aligned_cols=171  Identities=14%  Similarity=0.162  Sum_probs=106.6

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC-hhhHhhcccCCCceeecCcCCcee--eecCcccc
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN-LSDAFQQRFTKTPTLVNGFSNLYA--MEVDPSVE  101 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~-l~~~~~~~~~~~~~~~~~~~~l~~--~~~d~~~~  101 (365)
                      ..++.|.|+|+||||||||+|+|||.+++++|+||+|||+|++.+ +..+||.+....-..    ..+..  ..++....
T Consensus        91 ~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~----~~~~~~~~~~~~~~l  166 (322)
T TIGR03815        91 ARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRW----PDLSQARGRLPAGAL  166 (322)
T ss_pred             CCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCH----HHHhhcCCCcCHHHH
Confidence            356778899999999999999999999999999999999999855 566777642110000    00000  01111110


Q ss_pred             cc-cccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhh
Q 017873          102 EE-TGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFG  180 (365)
Q Consensus       102 ~~-~~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~  180 (365)
                      .+ +....++..+.....  .+.......+..+++.++. .||||||||||+.+.....                     
T Consensus       167 ~~~~~~~~~l~vl~~~~~--~~~~~~~~~l~~~l~~l~~-~~D~VIID~p~~~~~~~~~---------------------  222 (322)
T TIGR03815       167 RDALPRRGGLSVLSWGRA--VGAALPPAAVRAVLDAARR-GGDLVVVDLPRRLTPAAET---------------------  222 (322)
T ss_pred             HHhCCCcCCeEEEecCCC--CcCCCCHHHHHHHHHHHHh-cCCEEEEeCCCCCCHHHHH---------------------
Confidence            00 111112211110000  0000112356777777776 7999999999976532110                     


Q ss_pred             hhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEE
Q 017873          181 GMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIII  260 (365)
Q Consensus       181 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVv  260 (365)
                                                           .+.  ..+.+++|+.|+..++..+.++++.+...+.++ .+|+
T Consensus       223 -------------------------------------~L~--~AD~vliV~~~~~~sl~~a~r~l~~l~~~~~~~-~lVv  262 (322)
T TIGR03815       223 -------------------------------------ALE--SADLVLVVVPADVRAVAAAARVCPELGRRNPDL-RLVV  262 (322)
T ss_pred             -------------------------------------HHH--HCCEEEEEcCCcHHHHHHHHHHHHHHhhhCCCe-EEEE
Confidence                                                 011  135789999999999999999999999877544 6778


Q ss_pred             cCc
Q 017873          261 NQV  263 (365)
Q Consensus       261 N~~  263 (365)
                      |+.
T Consensus       263 ~~~  265 (322)
T TIGR03815       263 RGP  265 (322)
T ss_pred             eCC
Confidence            876

Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.

>PRK13231 nitrogenase reductase-like protein; Reviewed

Probab=99.78  E-value=1.9e-18  Score=161.78  Aligned_cols=47  Identities=30%  Similarity=0.461  Sum_probs=41.8

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhh
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ   75 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~   75 (365)
                      +++|+|+ +||||||||+|+|||.+|++.| |||+||+||+++++..++
T Consensus         2 ~~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~   48 (264)
T PRK13231          2 MKKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLC   48 (264)
T ss_pred             ceEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhh
Confidence            3566777 7999999999999999999999 999999999998887654

>TIGR02016 BchX chlorophyllide reductase iron protein subunit X

Probab=99.77  E-value=5.3e-18  Score=161.25  Aligned_cols=45  Identities=33%  Similarity=0.529  Sum_probs=41.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHh
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF   74 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~   74 (365)
                      +|+|+ |||||||||+|+|||.+||++|+|||+||+||+.+.+..+
T Consensus         2 vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l   46 (296)
T TIGR02016         2 IIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLL   46 (296)
T ss_pred             EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchh
Confidence            56677 9999999999999999999999999999999998777666

This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring

Probab=99.75  E-value=2.1e-17  Score=158.34  Aligned_cols=50  Identities=32%  Similarity=0.473  Sum_probs=42.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC-ChhhHhhcc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLSDAFQQR   77 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~-~l~~~~~~~   77 (365)
                      .+++.++||||+||||+++|||.+||++|+||++||+|+++ +++.+||..
T Consensus        31 ~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~   81 (329)
T cd02033          31 TQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGK   81 (329)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhcccc
Confidence            34554458999999999999999999999999999999885 677788754

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon

Probab=99.73  E-value=9.6e-17  Score=146.85  Aligned_cols=53  Identities=38%  Similarity=0.411  Sum_probs=49.1

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFT   79 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~   79 (365)
                      +++|++.|-||||||||+++|||++|++.|++|++||+||+..|.-.||.+..
T Consensus         1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~   53 (243)
T PF06564_consen    1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLD   53 (243)
T ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCc
Confidence            45788999999999999999999999999999999999999999999998754

It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=99.72  E-value=4.9e-17  Score=145.37  Aligned_cols=170  Identities=22%  Similarity=0.265  Sum_probs=111.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCC-CCEEEEeCCCCCChhhHhhcccCCCcee---------ecCcCCceeeecCccc
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVR-PSVLIISTDPAHNLSDAFQQRFTKTPTL---------VNGFSNLYAMEVDPSV  100 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G-~rVLLiD~D~~~~l~~~~~~~~~~~~~~---------~~~~~~l~~~~~d~~~  100 (365)
                      +-++||||+||||+|+.||..+..+| ++||+||+||..+|+..||++.+.++..         ....++....+.....
T Consensus         3 IaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk~~   82 (255)
T COG3640           3 IAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFKEN   82 (255)
T ss_pred             EEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccccC
Confidence            45679999999999999888888665 9999999999999999999986421110         0000110000000000


Q ss_pred             cc--ccc----c-ccCcc-----chh-HHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHH
Q 017873          101 EE--ETG----S-TEGMD-----SLF-SELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEK  167 (365)
Q Consensus       101 ~~--~~~----~-~~~~~-----~~~-~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~  167 (365)
                      +.  ++.    . ...+.     .+. ....|.+|-   ...++.+++.+.-.+||+||+||=++...            
T Consensus        83 ~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~---~allR~~l~~l~~~~~e~VivDtEAGiEH------------  147 (255)
T COG3640          83 PLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPM---NALLRRLLRHLILNRYEVVIVDTEAGIEH------------  147 (255)
T ss_pred             cchhhhhHHHhhhcCCccEEEeccccCCCCcccchH---HHHHHHHHHHHhcccCcEEEEecccchhh------------
Confidence            00  000    0 00011     000 012233331   23677888888775799999999887652            


Q ss_pred             HHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHH
Q 017873          168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQE  247 (365)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~  247 (365)
                                            ||++                        ...  ..+.+++|+-|..-|+..++|+.+.
T Consensus       148 ----------------------fgRg------------------------~~~--~vD~vivVvDpS~~sl~taeri~~L  179 (255)
T COG3640         148 ----------------------FGRG------------------------TIE--GVDLVIVVVDPSYKSLRTAERIKEL  179 (255)
T ss_pred             ----------------------hccc------------------------ccc--CCCEEEEEeCCcHHHHHHHHHHHHH
Confidence                                  2322                        122  2568899999999999999999999


Q ss_pred             HHhCCCCcCeEEEcCc
Q 017873          248 LTKFEIDTHNIIINQV  263 (365)
Q Consensus       248 L~~~gi~v~~vVvN~~  263 (365)
                      -.+.|+.-..+|+|++
T Consensus       180 ~~elg~k~i~~V~NKv  195 (255)
T COG3640         180 AEELGIKRIFVVLNKV  195 (255)
T ss_pred             HHHhCCceEEEEEeec
Confidence            9999998889999999

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=99.71  E-value=1.4e-16  Score=128.66  Aligned_cols=101  Identities=24%  Similarity=0.383  Sum_probs=82.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccccccccc
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTE  108 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  108 (365)
                      |+++|+|||+||||++.+||.++++. |++|+++|+|++.+.                                      
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~--------------------------------------   43 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD--------------------------------------   43 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC--------------------------------------
Confidence            67899999999999999999999998 999999999997320                                      


Q ss_pred             CccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHHh
Q 017873          109 GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR  188 (365)
Q Consensus       109 ~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~~  188 (365)
                                                        |||||||||+.+.....                             
T Consensus        44 ----------------------------------D~IIiDtpp~~~~~~~~-----------------------------   60 (106)
T cd03111          44 ----------------------------------DYVVVDLGRSLDEVSLA-----------------------------   60 (106)
T ss_pred             ----------------------------------CEEEEeCCCCcCHHHHH-----------------------------
Confidence                                              89999999976532111                             


Q ss_pred             hhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCC---cCeEEEcC
Q 017873          189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEID---THNIIINQ  262 (365)
Q Consensus       189 ~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~---v~~vVvN~  262 (365)
                                                   .+.  ..+.+++|+.|+..++..+.++++.+++.+.+   -..+|+||
T Consensus        61 -----------------------------~l~--~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          61 -----------------------------ALD--QADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             -----------------------------HHH--HcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence                                         000  02478999999999999999999999988865   45688886

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=99.70  E-value=6.7e-16  Score=139.37  Aligned_cols=144  Identities=18%  Similarity=0.234  Sum_probs=97.3

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccccccc
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGS  106 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  106 (365)
                      ++.|.|+|.|||+||||.+..||..|+++|.+|.|||+||+.++..|-.......  ...  .++.+..           
T Consensus         1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~--~~~--~~~~V~~-----------   65 (231)
T PF07015_consen    1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPG--AWP--DRIEVYE-----------   65 (231)
T ss_pred             CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccC--CCC--CCeeEEe-----------
Confidence            3578899999999999999999999999999999999999999998865432110  000  1111111           


Q ss_pred             ccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHH
Q 017873          107 TEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM  186 (365)
Q Consensus       107 ~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~  186 (365)
                                       ..+...+....+......|||||||+.++.+.+.-..                         +
T Consensus        66 -----------------~~e~~~l~~~~e~a~~~~~d~VlvDleG~as~~~~~a-------------------------i  103 (231)
T PF07015_consen   66 -----------------ADELTILEDAYEAAEASGFDFVLVDLEGGASELNDYA-------------------------I  103 (231)
T ss_pred             -----------------ccchhhHHHHHHHHHhcCCCEEEEeCCCCCchhHHHH-------------------------H
Confidence                             0112245555555554369999999999877533220                         1


Q ss_pred             HhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC------CCCcCeEEE
Q 017873          187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF------EIDTHNIII  260 (365)
Q Consensus       187 ~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~------gi~v~~vVv  260 (365)
                      +                               .    .+-+++=+.+..+-..++.+.++++.+.      .+|. .|+.
T Consensus       104 a-------------------------------~----sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~-~Vl~  147 (231)
T PF07015_consen  104 A-------------------------------R----SDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPA-AVLF  147 (231)
T ss_pred             H-------------------------------H----CCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCe-eEEE
Confidence            0                               0    1345666667777788888888777654      3455 5888


Q ss_pred             cCc
Q 017873          261 NQV  263 (365)
Q Consensus       261 N~~  263 (365)
                      +|+
T Consensus       148 Tr~  150 (231)
T PF07015_consen  148 TRV  150 (231)
T ss_pred             ecC
Confidence            998

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=99.68  E-value=4.3e-16  Score=142.10  Aligned_cols=50  Identities=30%  Similarity=0.443  Sum_probs=44.2

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC-CCCChhhHhhcc
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD-PAHNLSDAFQQR   77 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D-~~~~l~~~~~~~   77 (365)
                      +|+|+++|||||+||||+|+|||..|+.. +|++|+|+| ..||++-+|+.+
T Consensus         1 mm~vAV~sGKGGtGKTTva~~la~~l~~~-~~~~l~DcDVe~PNl~l~l~~e   51 (284)
T COG1149           1 MMQVAVASGKGGTGKTTVAANLAVLLGDK-YKLVLADCDVEAPNLHLLLGVE   51 (284)
T ss_pred             CcEEEEeecCCCCChhhHHHHHHHHhccc-cceEEEecCCCCCCcceEeccc
Confidence            47899999999999999999999999854 899999999 458888788765

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=99.66  E-value=2.7e-15  Score=127.08  Aligned_cols=106  Identities=27%  Similarity=0.367  Sum_probs=84.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCcccccccccccC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEG  109 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~  109 (365)
                      |.|+|+|||+||||+++++|..++.+|++|+++|+|++.+..                                      
T Consensus         2 i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~--------------------------------------   43 (139)
T cd02038           2 IAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL--------------------------------------   43 (139)
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC--------------------------------------
Confidence            679999999999999999999999999999999999853210                                      


Q ss_pred             ccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHHhh
Q 017873          110 MDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRL  189 (365)
Q Consensus       110 ~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~  189 (365)
                                  +                   ||||||||||+.+.....                              
T Consensus        44 ------------~-------------------yd~VIiD~p~~~~~~~~~------------------------------   62 (139)
T cd02038          44 ------------D-------------------YDYIIIDTGAGISDNVLD------------------------------   62 (139)
T ss_pred             ------------C-------------------CCEEEEECCCCCCHHHHH------------------------------
Confidence                        0                   999999999965432110                              


Q ss_pred             hCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC-CCCcCeEEEcCcc
Q 017873          190 FGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF-EIDTHNIIINQVL  264 (365)
Q Consensus       190 ~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~-gi~v~~vVvN~~~  264 (365)
                                                  .+..  .+.+++|+.|+..++..+.+.++.+.+. +....++|+|++.
T Consensus        63 ----------------------------~l~~--aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~  108 (139)
T cd02038          63 ----------------------------FFLA--ADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAE  108 (139)
T ss_pred             ----------------------------HHHh--CCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence                                        0111  2478999999999999999999988643 4556689999993

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family

Probab=99.66  E-value=4.9e-16  Score=142.19  Aligned_cols=234  Identities=22%  Similarity=0.329  Sum_probs=116.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhH-hhcccCCCceeecCcCCcee-eecCccccccccc
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA-FQQRFTKTPTLVNGFSNLYA-MEVDPSVEEETGS  106 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~-~~~~~~~~~~~~~~~~~l~~-~~~d~~~~~~~~~  106 (365)
                      +|+|. ||||.||||+|+|++.+||+.|+||++|-|||.++.+.. ++...  .++....+..-.. -.++.++.+ ..+
T Consensus         2 ~IAiY-GKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~--~~Tvld~~~~~~~~e~~~ledvv-~~G   77 (273)
T PF00142_consen    2 KIAIY-GKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKA--IPTVLDLLREKGSVEDLELEDVV-KEG   77 (273)
T ss_dssp             EEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS---SBHHHHHHHHCTGGGS-HHHHS-EEE
T ss_pred             eEEEE-cCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCcc--chhHHHHHhhccccccCCCCcEE-Eec
Confidence            45554 899999999999999999999999999999999887754 44321  1111110000000 000000000 000


Q ss_pred             ccCccchhHHhhhcCCCH----HHHHHHHHHHHHHHh--CCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhh
Q 017873          107 TEGMDSLFSELANAIPGI----DEAMSFAEMLKLVQT--MDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFG  180 (365)
Q Consensus       107 ~~~~~~~~~~~~~~~pg~----~~~~~l~~l~~~l~~--~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~  180 (365)
                      ..++..+.  ....-||.    .-.....++++...-  .+||+|++|.-...     .                   .+
T Consensus        78 ~~gi~CvE--sGGPePGvGCaGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDV-----V-------------------CG  131 (273)
T PF00142_consen   78 FKGILCVE--SGGPEPGVGCAGRGIITALELLEELGAYEDDYDFVLYDVLGDV-----V-------------------CG  131 (273)
T ss_dssp             GGGEEEEE-----SCTTSSBHHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSS-----S-------------------CT
T ss_pred             cCCceeec--cCCCcccccccccchhhhhhhHHhhhhhhcCCceEEEEEEeee-----E-------------------Ee
Confidence            11111110  01112221    111122233333322  26899999965411     0                   11


Q ss_pred             hhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC----CCCcC
Q 017873          181 GMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF----EIDTH  256 (365)
Q Consensus       181 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~----gi~v~  256 (365)
                      ++.-|+.                                 .-....+++||+-+.+|+..+.++.+.++.+    +.++.
T Consensus       132 GFamPir---------------------------------~g~a~evyIVtSge~mslyAANNI~~~i~~~~~~g~~~l~  178 (273)
T PF00142_consen  132 GFAMPIR---------------------------------EGYAQEVYIVTSGEFMSLYAANNICKAIKNFADRGGARLG  178 (273)
T ss_dssp             TTTHHHH---------------------------------TTS-SEEEEEEBSSHHHHHHHHHHHHHHHHHCTTSS-EEE
T ss_pred             eeehhhh---------------------------------hccCCEEEEEecCcHHHHHHHHHHHHHHHHHhccCCCceE
Confidence            1111221                                 1123589999999999999999999988865    46899


Q ss_pred             eEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEec--------------CCCCCCCC--HHHHHHHHHh
Q 017873          257 NIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLP--------------LLPEEVTG--IEALKAFSQH  320 (365)
Q Consensus       257 ~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp--------------~~~~e~~g--~~~L~~l~~~  320 (365)
                      |+|.|+...+.+              ...+++|.+...-.-+..+|              .....|.+  ...+++||+.
T Consensus       179 GiI~N~r~~~~e--------------~~~v~~fa~~~g~~i~~~iPr~~~v~~ae~~~~TVie~~P~s~~a~~yr~LA~~  244 (273)
T PF00142_consen  179 GIICNSRNVDDE--------------EEIVEDFAERIGTPIIAFIPRSEIVQRAELYGKTVIEAAPDSEQAQEYRELARK  244 (273)
T ss_dssp             EEEEE-SSSTTH--------------HHHHHHHHHHHTSEEEEEE---HHHHHHHHCTS-CCCC-TTSHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCc--------------hHHHHHHHHHcCCcEEEecCchHHHHHHHHcCCEEEEeCCCcHHHHHHHHHHHH
Confidence            999995523321              22333333333222233333              33455655  4789999999


Q ss_pred             hcCCCCC-CCCcchhhhhhh
Q 017873          321 FVTPYQP-STSRDTVEDLER  339 (365)
Q Consensus       321 l~~~~~~-~~~~~~~~~~~~  339 (365)
                      ++....+ .+..-..+++|.
T Consensus       245 I~~~~~~~~P~PL~~eeL~~  264 (273)
T PF00142_consen  245 ILENPEPVIPKPLSDEELEE  264 (273)
T ss_dssp             HHH----B------HHHHHH
T ss_pred             HHhCCCCCCCCCCCHHHHHH
Confidence            8865433 233334444443

Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....

>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments

Probab=99.65  E-value=1.1e-16  Score=144.99  Aligned_cols=112  Identities=21%  Similarity=0.194  Sum_probs=63.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC-CCChhhHhhcccCCCceeecCcCCceeeecCccccccccc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGS  106 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~-~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  106 (365)
                      +.|++.||||||||||+|.|+|.+|+++|+||.++|+|. ++|+..+++.....  ...   .++.   +.....     
T Consensus         1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~--~~~---~gi~---Lp~p~~-----   67 (261)
T PF09140_consen    1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAW--AQR---DGIE---LPVPSH-----   67 (261)
T ss_dssp             EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHH--HHH---HT---------EE-----
T ss_pred             CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchh--HHh---cCcc---cCCccc-----
Confidence            468899999999999999999999999999999999996 69999999865211  000   0110   000000     


Q ss_pred             ccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHH
Q 017873          107 TEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTL  156 (365)
Q Consensus       107 ~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l  156 (365)
                       ..+..  ....-...+......+.+++..+.. ++||||||||++.+.+
T Consensus        68 -~~L~~--~~~~v~~~~~~~~~~L~q~l~~l~~-~~DfLVID~PGtd~~l  113 (261)
T PF09140_consen   68 -FFLPP--DQASVWEGENVEDKRLEQALADLEG-DLDFLVIDTPGTDDRL  113 (261)
T ss_dssp             -E-SSS--HHHHTTS-HHHHHHHHHHHHHHHHH-H-SEEEEEE-SSS-HH
T ss_pred             -eeecc--cccccccCcchhHHHHHHHHHHHhc-CCCEEEEeCCCCCcHH
Confidence             00111  0001111222333577778887776 7999999999766543

Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=99.64  E-value=2e-15  Score=121.11  Aligned_cols=38  Identities=42%  Similarity=0.535  Sum_probs=36.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      |.|.|.|||+||||+|+++|..++++|.+|+++|+|++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~   39 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ   39 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            67999999999999999999999999999999999975

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]

Probab=99.57  E-value=1.6e-14  Score=128.67  Aligned_cols=163  Identities=23%  Similarity=0.356  Sum_probs=101.8

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccC------------------CCceeecCcC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFT------------------KTPTLVNGFS   89 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~------------------~~~~~~~~~~   89 (365)
                      ++|+|. ||||.||||+++|+|.+||..|+||++|-|||.++.+..+-....                  .+.....|+.
T Consensus         2 r~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~   80 (278)
T COG1348           2 RQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFG   80 (278)
T ss_pred             ceEEEe-cCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccCC
Confidence            345554 899999999999999999999999999999999877755532100                  0111122233


Q ss_pred             CceeeecCcccccccccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHH
Q 017873           90 NLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGL  169 (365)
Q Consensus        90 ~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l  169 (365)
                      |+.+.+.              ..-.+...++-.|......+.+-+...++ ..|+|++|.....     .          
T Consensus        81 Gv~CVEs--------------GGPepGvGCAGRGVitai~~Le~lgaf~~-~~DvviyDVLGDV-----V----------  130 (278)
T COG1348          81 GVKCVES--------------GGPEPGVGCAGRGVITAINLLEELGAFEE-DLDVVIYDVLGDV-----V----------  130 (278)
T ss_pred             ceEEeec--------------CCCCCCCCcccchHHHHHHHHHHhCCccc-cCCEEEEeccCce-----e----------
Confidence            3333322              00012334444555443333322222333 3699999976621     0          


Q ss_pred             HHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHH
Q 017873          170 DKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELT  249 (365)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~  249 (365)
                               .+++.-|+                                 +.-....+++||+-+.+++..+.++.+.+.
T Consensus       131 ---------CGGFAmPi---------------------------------Reg~AdeiyIVtSge~MalYAANNI~kgi~  168 (278)
T COG1348         131 ---------CGGFAMPI---------------------------------REGYADEIYIVTSGEMMALYAANNIAKGIR  168 (278)
T ss_pred             ---------ecceeeeh---------------------------------hcccCcEEEEEecCchHHHHHHHHHHHHHH
Confidence                     01111111                                 112246899999999999999998888877


Q ss_pred             hC----CCCcCeEEEcCc
Q 017873          250 KF----EIDTHNIIINQV  263 (365)
Q Consensus       250 ~~----gi~v~~vVvN~~  263 (365)
                      ++    ++++.|+|.|.-
T Consensus       169 k~a~~~~~rLgGiIcNsr  186 (278)
T COG1348         169 KYAKTGGVRLGGIICNSR  186 (278)
T ss_pred             HHhhcCCcceeeEEecCC
Confidence            54    588999999987

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=99.47  E-value=2.3e-12  Score=121.09  Aligned_cols=40  Identities=33%  Similarity=0.340  Sum_probs=35.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+++.+.|++|+||||++++||.++++.|++|++||+|+.
T Consensus        72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~  111 (272)
T TIGR00064        72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF  111 (272)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            4555555999999999999999999999999999999974

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=99.40  E-value=4.9e-12  Score=108.28  Aligned_cols=39  Identities=26%  Similarity=0.352  Sum_probs=35.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      +.+.||||+||||++.+++..+...|.||+++|+|++.+
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~   40 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSP   40 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Confidence            456799999999999999999999999999999998654

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D

Probab=99.39  E-value=2.3e-13  Score=116.92  Aligned_cols=50  Identities=34%  Similarity=0.281  Sum_probs=40.0

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQR   77 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~   77 (365)
                      +.|.|+|.+||+||||+|.++|..+|+.|++|++||+|.. +++..+++.+
T Consensus         1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~   51 (157)
T PF13614_consen    1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIE   51 (157)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccc
Confidence            3577999999999999999999999999999999999976 5566666654

>PRK13886 conjugal transfer protein TraL; Provisional

Probab=99.34  E-value=1.2e-10  Score=106.76  Aligned_cols=42  Identities=31%  Similarity=0.434  Sum_probs=38.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      +.+++.+|||||||||+|+++|.+++.+|++|++||+||+.+
T Consensus         3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~   44 (241)
T PRK13886          3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNA   44 (241)
T ss_pred             eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence            456788899999999999999999999999999999999864

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=99.33  E-value=8.4e-11  Score=102.97  Aligned_cols=45  Identities=27%  Similarity=0.429  Sum_probs=38.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC-ChhhHh
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLSDAF   74 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~-~l~~~~   74 (365)
                      ++++.|++|+||||++.++|..+++.|++|+++|+|+.. .....+
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l   47 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQL   47 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHH
Confidence            567789999999999999999999999999999999864 333434

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK10867 signal recognition particle protein; Provisional

Probab=99.32  E-value=3.2e-11  Score=119.72  Aligned_cols=43  Identities=26%  Similarity=0.359  Sum_probs=38.8

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHN   69 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~~~   69 (365)
                      .+.+++++|.+|+||||++++||.++++. |++|++||+|+...
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~  142 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP  142 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence            35678888999999999999999999988 99999999998754

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=99.32  E-value=5.7e-12  Score=103.33  Aligned_cols=99  Identities=27%  Similarity=0.338  Sum_probs=64.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCcccccccccccCc
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGM  110 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~  110 (365)
                      ++++||||+||||++.++|.+++++|++|+++|+|| .++...++......+..      +.....         .+.+ 
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~-~~~~~~~~~~~~~~~~~------i~~g~~---------~~~~-   64 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP-DDLPERLSVEVGEIKLL------LVMGMG---------RPGG-   64 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc-hhhHHHHhhccCCceEE------EEeccc---------ccCC-
Confidence            577899999999999999999999999999999999 66666666543211000      000000         0000 


Q ss_pred             cchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhH
Q 017873          111 DSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHT  155 (365)
Q Consensus       111 ~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~  155 (365)
                            ..+..+.   ...+.+++..+....|||+++||+++...
T Consensus        65 ------~g~~~~~---n~~~~~~l~~~~~~~~~~vivDt~ag~e~  100 (116)
T cd02034          65 ------EGCYCPE---NALLNALLRHLVLTRDEQVVVDTEAGLEH  100 (116)
T ss_pred             ------CCCEehh---hHHHHHHHHHeEccCCCEEEEecHHHHHH
Confidence                  0111111   11566777775333799999999998764

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=99.30  E-value=2.3e-10  Score=109.82  Aligned_cols=42  Identities=29%  Similarity=0.261  Sum_probs=36.8

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      ..++.+.|.+|+||||++++||..++..|++|+|+|+|+...
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~  155 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA  155 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch
Confidence            356666689999999999999999999999999999998643

>TIGR00347 bioD dethiobiotin synthase

Probab=99.29  E-value=3.3e-11  Score=104.85  Aligned_cols=36  Identities=14%  Similarity=0.157  Sum_probs=34.2

Q ss_pred             EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEc
Q 017873          226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN  261 (365)
Q Consensus       226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN  261 (365)
                      .+++|+.+....+.++....+.|++.|+++.|+|+|
T Consensus       131 ~vilV~~~~~~~~~~~~~~~~~l~~~~~~i~gvv~N  166 (166)
T TIGR00347       131 PVILVVRVKLGTINHTLLTVEHARQTGLTLAGVILN  166 (166)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence            579999999999999999999999999999999998

Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.

>TIGR00959 ffh signal recognition particle protein

Probab=99.27  E-value=9.4e-11  Score=116.37  Aligned_cols=43  Identities=26%  Similarity=0.318  Sum_probs=38.5

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPAHN   69 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~~~   69 (365)
                      .+.+++++|.+|+||||++++||.++. +.|++|++||+|+...
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~  141 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP  141 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence            357889999999999999999999987 6899999999997644

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=99.24  E-value=2.3e-10  Score=113.19  Aligned_cols=42  Identities=19%  Similarity=0.203  Sum_probs=38.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      ..++.+.|.+|+||||+++.||.++++.|++|+||++|+...
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~  141 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA  141 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence            568888899999999999999999999999999999998753

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK13768 GTPase; Provisional

Probab=99.24  E-value=1.3e-09  Score=101.55  Aligned_cols=43  Identities=40%  Similarity=0.444  Sum_probs=39.2

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      ++.+++++|+||+||||++.+++.+++..|++|++||+||+.+
T Consensus         1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~   43 (253)
T PRK13768          1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVE   43 (253)
T ss_pred             CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccc
Confidence            3568888999999999999999999999999999999999754

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=99.20  E-value=3.4e-10  Score=112.67  Aligned_cols=59  Identities=19%  Similarity=0.213  Sum_probs=45.7

Q ss_pred             hhhcchhhHHhhhcC--------CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           11 ELEIPEGSVRNILEQ--------DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        11 ~~~~~~~~l~~~~~~--------~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      -++.++..|..++..        ..+.++++.|.+|+||||++++||.++.+.|++|++|++|+...
T Consensus        70 ~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~  136 (437)
T PRK00771         70 VIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP  136 (437)
T ss_pred             HHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence            344555555555542        23567777799999999999999999999999999999997533

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=99.17  E-value=4.5e-10  Score=107.68  Aligned_cols=173  Identities=20%  Similarity=0.221  Sum_probs=104.9

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcC-CceeeecCcccc
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFS-NLYAMEVDPSVE  101 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~~~  101 (365)
                      ++++.+.|++.|||+|-||+|.|+|+.++ +.+..|+|+|+|.+ ++-.-+|+......-....-.+ -|....+|   .
T Consensus       102 ~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld---~  178 (366)
T COG4963         102 QQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLD---S  178 (366)
T ss_pred             hhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHH---H
Confidence            45677889999999999999999999999 56899999999966 4444555544221100000000 00000000   0


Q ss_pred             cccccccCccchhHHhhhcCCCHHH-----HHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHH
Q 017873          102 EETGSTEGMDSLFSELANAIPGIDE-----AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLK  176 (365)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~pg~~~-----~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~  176 (365)
                      .......++.-     .....+...     ...+..+++.++. .||+||||.|-...            .|..+     
T Consensus       179 ~~~~~~~~l~l-----l~a~~~~~~~~d~~~~~~~~Ll~~~~~-~~~~vV~Dlp~~~~------------~~t~~-----  235 (366)
T COG4963         179 LLTRLASGLKL-----LAAPTELAKNYDLKTGAVERLLDLLRG-SFDFVVVDLPNIWT------------DWTRQ-----  235 (366)
T ss_pred             HHhccCCCcee-----ecCCcchhhhcccccchHHHHHHHhhc-cCCeEEEcCCCccc------------hHHHH-----
Confidence            00001111110     000011111     1356777887777 79999999994211            12111     


Q ss_pred             HhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCC--C
Q 017873          177 NKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEI--D  254 (365)
Q Consensus       177 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi--~  254 (365)
                                                               .|..  .+.+++|+.|+..+++.+++++..|++...  +
T Consensus       236 -----------------------------------------vL~~--Sd~iviv~e~sl~slR~ak~lld~l~~~r~~~~  272 (366)
T COG4963         236 -----------------------------------------VLSG--SDEIVIVAEPSLASLRNAKELLDELKRLRPNDP  272 (366)
T ss_pred             -----------------------------------------HHhc--CCeEEEEecccHHHHHHHHHHHHHHHHhCCCCC
Confidence                                                     1211  368999999999999999999999998765  4


Q ss_pred             cCeEEEcCccCC
Q 017873          255 THNIIINQVLYD  266 (365)
Q Consensus       255 v~~vVvN~~~~~  266 (365)
                      ....|+|++..+
T Consensus       273 ~p~lv~n~~~~~  284 (366)
T COG4963         273 KPILVLNRVGVP  284 (366)
T ss_pred             CceEEeeecCCC
Confidence            456899999533

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=99.16  E-value=3.7e-10  Score=88.04  Aligned_cols=34  Identities=47%  Similarity=0.624  Sum_probs=31.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      +++++|++|+||||++.++|..+++.|++|+++|
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            3577888899999999999999999999999999

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=99.09  E-value=2.8e-09  Score=103.64  Aligned_cols=40  Identities=28%  Similarity=0.321  Sum_probs=36.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      +++.+.|.+|+||||+++.||..+..+|++|+++++|+..
T Consensus       242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R  281 (436)
T PRK11889        242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  281 (436)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence            5667778899999999999999999999999999999875

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.08  E-value=2.8e-09  Score=103.35  Aligned_cols=59  Identities=24%  Similarity=0.174  Sum_probs=43.8

Q ss_pred             hhhcchhhHHhhhc------CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           11 ELEIPEGSVRNILE------QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        11 ~~~~~~~~l~~~~~------~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      ..+.+.+.|..++.      ....+++.+.|..|+||||+++.+|..+..+|++|.+|++|+...
T Consensus       183 v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~  247 (407)
T PRK12726        183 ITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS  247 (407)
T ss_pred             HHHHHHHHhcCcEeeCCCceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence            34444444554443      123456666677899999999999999999999999999998754

>PRK14974 cell division protein FtsY; Provisional

Probab=99.04  E-value=5.1e-09  Score=101.00  Aligned_cols=40  Identities=30%  Similarity=0.269  Sum_probs=37.0

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ..++++.|.+|+||||+++++|.++...|++|+++++|..
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~  179 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF  179 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence            5688888999999999999999999999999999999964

>PRK00090 bioD dithiobiotin synthetase; Reviewed

Probab=99.00  E-value=4.2e-08  Score=89.42  Aligned_cols=68  Identities=12%  Similarity=0.080  Sum_probs=49.2

Q ss_pred             EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEE-EecCC
Q 017873          226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHIT-KLPLL  304 (365)
Q Consensus       226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~-~vp~~  304 (365)
                      .+++|+.++..++..+...++.++..|+++.|+|+|++ .+..          ...+....+.+.+.+. .+++ .+|.+
T Consensus       135 pvilV~~~~~~~i~~~~~~i~~l~~~~~~i~gvIlN~~-~~~~----------~~~~~~~~~~l~~~~g-i~vlg~ip~~  202 (222)
T PRK00090        135 PVILVVGVKLGCINHTLLTLEAIRARGLPLAGWVANGI-PPEP----------GLRHAENLATLERLLP-APLLGELPYL  202 (222)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEEccC-CCcc----------hhHHHHHHHHHHHHcC-CCeEEecCCC
Confidence            57899999988999999999999999999999999998 3320          0122334556666554 4544 57876


Q ss_pred             C
Q 017873          305 P  305 (365)
Q Consensus       305 ~  305 (365)
                      .
T Consensus       203 ~  203 (222)
T PRK00090        203 A  203 (222)
T ss_pred             C
Confidence            3

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.96  E-value=1.8e-08  Score=99.13  Aligned_cols=44  Identities=32%  Similarity=0.293  Sum_probs=37.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHH-HHCCCCEEEEeCCCCCChh
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILL-AEVRPSVLIISTDPAHNLS   71 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~l-a~~G~rVLLiD~D~~~~l~   71 (365)
                      ..++++.|.+|+||||++++||..+ ...|++|+++|+|++...+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA  267 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA  267 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH
Confidence            4577788999999999999999876 5789999999999876543

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.95  E-value=1.4e-08  Score=102.21  Aligned_cols=41  Identities=27%  Similarity=0.298  Sum_probs=33.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEeCCCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTDPAHN   69 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD~D~~~~   69 (365)
                      .++.+.|.+|+||||++++||..++..  |++|.+|++|+...
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi  393 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV  393 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence            344455889999999999999998865  58999999998643

>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []

Probab=98.94  E-value=4.8e-10  Score=84.88  Aligned_cols=48  Identities=15%  Similarity=0.208  Sum_probs=36.1

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHH
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRA  277 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~  277 (365)
                      +++++||+|...|..+++|.+..+++.++|+.|+|.|+..     ..|+.|..
T Consensus        26 ~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~-----~~Cp~Cg~   73 (81)
T PF10609_consen   26 DGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSY-----FVCPHCGE   73 (81)
T ss_dssp             SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-E-----EE-TTT--
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCc-----cCCCCCCC
Confidence            5899999999999999999999999999999999999994     34555543

It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.92  E-value=1.7e-07  Score=89.52  Aligned_cols=44  Identities=27%  Similarity=0.363  Sum_probs=38.6

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCCh
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL   70 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l   70 (365)
                      ...++.++|++|+||||++.+++..+...|++|.+|++|+....
T Consensus        33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~   76 (300)
T TIGR00750        33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPF   76 (300)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence            34566666999999999999999999999999999999987654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.91  E-value=2.6e-08  Score=89.20  Aligned_cols=39  Identities=36%  Similarity=0.347  Sum_probs=33.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      +++++-|-.||||||+++-||..+..+|++|.+|.+|..
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~   40 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY   40 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence            567777899999999999999999988999999999965

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.87  E-value=2.6e-08  Score=99.39  Aligned_cols=40  Identities=33%  Similarity=0.294  Sum_probs=34.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH--HCCCCEEEEeCCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDPAH   68 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la--~~G~rVLLiD~D~~~   68 (365)
                      .++++.|++||||||++++||..++  ..|++|++||+|++.
T Consensus       222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r  263 (424)
T PRK05703        222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR  263 (424)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence            3566668999999999999999998  457999999999874

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.84  E-value=1.4e-07  Score=87.90  Aligned_cols=112  Identities=20%  Similarity=0.320  Sum_probs=72.5

Q ss_pred             HHhhhcCCCe-EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh--hHhhcccCCCceeecCcCCceeee
Q 017873           19 VRNILEQDSL-KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS--DAFQQRFTKTPTLVNGFSNLYAME   95 (365)
Q Consensus        19 l~~~~~~~~~-~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~~   95 (365)
                      |+.+....+. .++=++|-||+||||+.-.|...|.++|+||.++..||....+  .++|....-.....  -+|+++..
T Consensus        41 l~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~--~~~vFiRs  118 (323)
T COG1703          41 LRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAV--DPGVFIRS  118 (323)
T ss_pred             HHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhcc--CCCeEEee
Confidence            4444443333 4677779999999999999999999999999999999875543  55554432111111  14554433


Q ss_pred             cCcccccccccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCh
Q 017873           96 VDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTG  153 (365)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~  153 (365)
                      +..                   .....|..  ......+..++...||+|||-|-..+
T Consensus       119 ~~s-------------------rG~lGGlS--~at~~~i~~ldAaG~DvIIVETVGvG  155 (323)
T COG1703         119 SPS-------------------RGTLGGLS--RATREAIKLLDAAGYDVIIVETVGVG  155 (323)
T ss_pred             cCC-------------------Cccchhhh--HHHHHHHHHHHhcCCCEEEEEecCCC
Confidence            200                   00112222  25566777777778999999998754

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.77  E-value=2.3e-07  Score=90.51  Aligned_cols=42  Identities=26%  Similarity=0.355  Sum_probs=37.8

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      +.+.++++-|=-|.||||+++-||.+|.++|+||+||.||..
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~  139 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTY  139 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccC
Confidence            345677888999999999999999999999999999999954

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.75  E-value=1.2e-07  Score=93.21  Aligned_cols=42  Identities=26%  Similarity=0.302  Sum_probs=36.1

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHH----CCCCEEEEeCCCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAE----VRPSVLIISTDPAH   68 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~----~G~rVLLiD~D~~~   68 (365)
                      ...++++.|+.||||||+++.+|..+..    .|++|++|++|+..
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R  218 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR  218 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence            3467788899999999999999998873    58999999999853

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.74  E-value=1.8e-07  Score=88.56  Aligned_cols=40  Identities=33%  Similarity=0.353  Sum_probs=36.4

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .+.++.+-|-.|+||||+.+-||.++.+.|++|+|.-+|.
T Consensus       138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DT  177 (340)
T COG0552         138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDT  177 (340)
T ss_pred             CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecch
Confidence            3566777799999999999999999999999999999994

>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms

Probab=98.71  E-value=7e-07  Score=75.04  Aligned_cols=39  Identities=10%  Similarity=0.012  Sum_probs=36.4

Q ss_pred             EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCcc
Q 017873          226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL  264 (365)
Q Consensus       226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~  264 (365)
                      .+++|++|+..++.++...++.++..|+++.+++.|+..
T Consensus        70 ~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~  108 (134)
T cd03109          70 PAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIV  108 (134)
T ss_pred             CEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCC
Confidence            479999999999999999999999999999999999983

The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.68  E-value=2.1e-06  Score=82.86  Aligned_cols=45  Identities=27%  Similarity=0.364  Sum_probs=39.9

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCCh
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL   70 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l   70 (365)
                      +...++-++|.+|+||||++..++..+...|++|.++..||+...
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~   98 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTR   98 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccc
Confidence            345677888999999999999999999999999999999998654

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=98.68  E-value=5.2e-08  Score=92.24  Aligned_cols=41  Identities=29%  Similarity=0.258  Sum_probs=35.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHC-C-CCEEEEeCCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEV-R-PSVLIISTDPAH   68 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~-G-~rVLLiD~D~~~   68 (365)
                      ..++.+.|.+||||||+++.||.+++.. | ++|.+|++|+..
T Consensus       194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r  236 (282)
T TIGR03499       194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR  236 (282)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence            3466666899999999999999999976 5 999999999864

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.62  E-value=1.3e-06  Score=88.16  Aligned_cols=41  Identities=24%  Similarity=0.156  Sum_probs=36.8

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ++.+++++.++|+||||++++|+.+|+++|++|..+...|.
T Consensus         3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd   43 (451)
T PRK01077          3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPD   43 (451)
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCC
Confidence            45688888899999999999999999999999999988654

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.59  E-value=1.3e-06  Score=81.88  Aligned_cols=40  Identities=28%  Similarity=0.321  Sum_probs=35.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      ..+.+.|++|+||||+...+|..+...|++|.++++|+..
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r  115 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  115 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            3555668899999999999999999889999999999764

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.50  E-value=1.5e-05  Score=73.60  Aligned_cols=41  Identities=32%  Similarity=0.378  Sum_probs=37.2

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+.++++-|-.|+||||+.--|-.++...+.+--+|.+||+
T Consensus        18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPA   58 (366)
T KOG1532|consen   18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPA   58 (366)
T ss_pred             CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHH
Confidence            45677888999999999999999999999999999999986

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.46  E-value=9.3e-07  Score=81.38  Aligned_cols=102  Identities=17%  Similarity=0.307  Sum_probs=59.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh--hHhhcccCCCceeecCcCCceeeecCccccccccc
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS--DAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGS  106 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  106 (365)
                      .++=++|.+|+||||+.-.|+..+.+.|+||.++..||....+  .++|....-...  ..-+|+++...-..       
T Consensus        30 ~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~--~~d~~vfIRS~atR-------  100 (266)
T PF03308_consen   30 HVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQEL--SRDPGVFIRSMATR-------  100 (266)
T ss_dssp             EEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHH--HTSTTEEEEEE----------
T ss_pred             eEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCc--CCCCCEEEeecCcC-------
Confidence            4566689999999999999999999999999999999874443  444533211000  01134443322000       


Q ss_pred             ccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCh
Q 017873          107 TEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTG  153 (365)
Q Consensus       107 ~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~  153 (365)
                       ..+           -|+.  ......+..++...||+|||-|-..+
T Consensus       101 -G~l-----------GGls--~~t~~~v~ll~aaG~D~IiiETVGvG  133 (266)
T PF03308_consen  101 -GSL-----------GGLS--RATRDAVRLLDAAGFDVIIIETVGVG  133 (266)
T ss_dssp             -SSH-----------HHHH--HHHHHHHHHHHHTT-SEEEEEEESSS
T ss_pred             -CCC-----------CCcc--HhHHHHHHHHHHcCCCEEEEeCCCCC
Confidence             000           1111  24556777777778999999998844

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.44  E-value=4.3e-06  Score=88.10  Aligned_cols=39  Identities=26%  Similarity=0.298  Sum_probs=34.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH-HCC-CCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLA-EVR-PSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la-~~G-~rVLLiD~D~~   67 (365)
                      .|+.+-|..||||||+.+.||..+. ..| ++|.++++|..
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~  226 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSF  226 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCccc
Confidence            5777779999999999999999885 566 69999999965

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=4.5e-06  Score=80.18  Aligned_cols=50  Identities=22%  Similarity=0.258  Sum_probs=40.6

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC-CCChhhHhhc
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQ   76 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~-~~~l~~~~~~   76 (365)
                      .+.++++-|=-|+||||+++-+|.++.++|+||+||-+|. ++...+.+..
T Consensus       100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkq  150 (483)
T KOG0780|consen  100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQ  150 (483)
T ss_pred             CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHH
Confidence            3457777788999999999999999999999999999994 3444455544

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=4.7e-06  Score=81.90  Aligned_cols=161  Identities=19%  Similarity=0.224  Sum_probs=98.7

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC-hhhHhhcccCCCceeecCcCCceeeecCcccccc
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN-LSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEE  103 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~-l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  103 (365)
                      ++.+.++.+.|-.||||||-=+-+|.||-+.+.|||+.-||+-.+ .-.-+++..          .+|....        
T Consensus       375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv----------~rl~~l~--------  436 (587)
T KOG0781|consen  375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHV----------ERLSALH--------  436 (587)
T ss_pred             cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHH----------HHHHHhc--------
Confidence            445557777899999999999999999999999999999996533 222233221          1111000        


Q ss_pred             cccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhH
Q 017873          104 TGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI  183 (365)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~  183 (365)
                         ..-+     .+....-|-+........+.+.+...||+|+|||++..|.-.-|                       +
T Consensus       437 ---~~~v-----~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~l-----------------------m  485 (587)
T KOG0781|consen  437 ---GTMV-----ELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPL-----------------------M  485 (587)
T ss_pred             ---cchh-----HHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhH-----------------------H
Confidence               0000     11111122233345556677777768999999999977643322                       2


Q ss_pred             HHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecC--CcchHHHHHHHHHHHHhCC--CCcCeEE
Q 017873          184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIP--EFLSLYETERLVQELTKFE--IDTHNII  259 (365)
Q Consensus       184 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p--~~~s~~et~~~~~~L~~~g--i~v~~vV  259 (365)
                      .++++++..                           .-|  +.+++|..+  ...++..+..+-+.|..+.  -.++|++
T Consensus       486 ~~l~k~~~~---------------------------~~p--d~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~  536 (587)
T KOG0781|consen  486 TSLAKLIKV---------------------------NKP--DLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGIL  536 (587)
T ss_pred             HHHHHHHhc---------------------------CCC--ceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEE
Confidence            222222221                           113  355666543  5667788888888887665  3478999


Q ss_pred             EcCc
Q 017873          260 INQV  263 (365)
Q Consensus       260 vN~~  263 (365)
                      +.++
T Consensus       537 ltk~  540 (587)
T KOG0781|consen  537 LTKF  540 (587)
T ss_pred             EEec
Confidence            9988

>PRK05632 phosphate acetyltransferase; Reviewed

Probab=98.36  E-value=7.4e-06  Score=86.75  Aligned_cols=36  Identities=22%  Similarity=0.062  Sum_probs=31.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      +.+.+++...|+|||+++..|+.+|.++|+||..+=
T Consensus         3 k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fK   38 (684)
T PRK05632          3 RSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFK   38 (684)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence            356677778999999999999999999999999876

>PRK12374 putative dithiobiotin synthetase; Provisional

Probab=98.32  E-value=4.6e-05  Score=70.01  Aligned_cols=70  Identities=13%  Similarity=0.045  Sum_probs=48.1

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCC
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLL  304 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~  304 (365)
                      ..+++|+....-.+..+.-..+.++..|+++.|+|+|++ .+...           ......+.+.+......+..+|+.
T Consensus       136 ~pvilV~~~~lg~in~~lLt~~~l~~~~~~~~gvV~N~~-~~~~~-----------~~~~~~~~l~~~~~~~~lg~iP~~  203 (231)
T PRK12374        136 LPVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVANRI-NPGLA-----------HYAEIIDVLGKKLPAPLIGELPYL  203 (231)
T ss_pred             CCEEEEECCCcChHHHHHHHHHHHHhCCCcEEEEEEeCc-cCchh-----------hhhhHHHHHHHhcCCCEEEEeCCC
Confidence            457889877777799999999999999999999999999 44310           011122334443333456678887


Q ss_pred             CC
Q 017873          305 PE  306 (365)
Q Consensus       305 ~~  306 (365)
                      +.
T Consensus       204 ~~  205 (231)
T PRK12374        204 PR  205 (231)
T ss_pred             CC
Confidence            44

>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]

Probab=98.32  E-value=2.2e-05  Score=71.34  Aligned_cols=41  Identities=12%  Similarity=0.070  Sum_probs=38.0

Q ss_pred             EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCC
Q 017873          226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDD  267 (365)
Q Consensus       226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~  267 (365)
                      .+++|+...--+++.|.-.++.++..|+++.|+|+|+. .+.
T Consensus       138 pvILV~~~~LGtINHtlLt~eal~~~gl~l~G~I~n~~-~~~  178 (223)
T COG0132         138 PVILVVGIKLGTINHTLLTVEALRARGLPLAGWVANGI-NPE  178 (223)
T ss_pred             CEEEEecCCccHHHHHHHHHHHHHHCCCCEEEEEEccC-CCc
Confidence            47999999999999999999999999999999999999 444

>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A

Probab=98.31  E-value=1.1e-05  Score=72.27  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=35.2

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|+....-++.++...++.++..|+++.|+|+|++
T Consensus       130 a~vIlV~~~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~~  168 (199)
T PF13500_consen  130 APVILVASGRLGTINHTLLTIEALKQRGIRVLGVILNRV  168 (199)
T ss_dssp             -EEEEEEESSTTHHHHHHHHHHHHHCTTS-EEEEEEEEC
T ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEEECC
Confidence            368999999999999999999999999999999999998

...

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.27  E-value=2.6e-05  Score=71.96  Aligned_cols=36  Identities=39%  Similarity=0.412  Sum_probs=29.0

Q ss_pred             eCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           34 GGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        34 sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      -|..|+||||.+.++..++...|++|.+|.+||+..
T Consensus         2 iGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~   37 (238)
T PF03029_consen    2 IGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVE   37 (238)
T ss_dssp             EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S
T ss_pred             CCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhc
Confidence            478999999999999999999999999999999844

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.25  E-value=2.6e-05  Score=76.30  Aligned_cols=39  Identities=28%  Similarity=0.322  Sum_probs=33.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH-HCC-CCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLA-EVR-PSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la-~~G-~rVLLiD~D~~   67 (365)
                      .++.+.|..||||||+++.||..+. +.| ++|.+|++|..
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~  178 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY  178 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            4677889999999999999999887 457 69999999975

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.25  E-value=1.3e-05  Score=78.31  Aligned_cols=39  Identities=33%  Similarity=0.397  Sum_probs=33.8

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHH--HCCCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la--~~G~rVLLiD~D~   66 (365)
                      .+++..-|..||||||+-|-||..+.  ...+||.+|.+|.
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt  243 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT  243 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc
Confidence            56776778999999999999999999  4457999999994

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=98.24  E-value=5.5e-06  Score=77.99  Aligned_cols=39  Identities=23%  Similarity=0.089  Sum_probs=33.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      +++-+.|.+|+||||++.+|+..|+++| +|.+|+.|+.+
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~   40 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTE   40 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCC
Confidence            4555556569999999999999999999 89999999843

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.20  E-value=2.2e-05  Score=79.21  Aligned_cols=39  Identities=28%  Similarity=0.304  Sum_probs=33.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH-HCC-CCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLA-EVR-PSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la-~~G-~rVLLiD~D~~   67 (365)
                      .|+.+-|..||||||+++.||..+. +.| ++|.+|++|+.
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~  297 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY  297 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence            5777779999999999999999886 566 59999999985

>cd01394 radB RadB

Probab=98.16  E-value=2e-05  Score=71.42  Aligned_cols=52  Identities=23%  Similarity=0.178  Sum_probs=44.0

Q ss_pred             hhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           17 GSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        17 ~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      +.|+.++.++  .-.++.++|.+|+||||++.++|..++..|.+|+.+|++...
T Consensus         6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~   59 (218)
T cd01394           6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLS   59 (218)
T ss_pred             hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence            5688888642  346788899999999999999999999999999999998543

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK00784 cobyric acid synthase; Provisional

Probab=98.09  E-value=0.00018  Score=73.37  Aligned_cols=35  Identities=23%  Similarity=0.156  Sum_probs=30.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEE
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII   62 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLi   62 (365)
                      +.+.+++-..|||||++++.|+.+|.++|++|..+
T Consensus         3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~   37 (488)
T PRK00784          3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPF   37 (488)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecc
Confidence            45667777899999999999999999999988865

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=98.00  E-value=0.00016  Score=70.92  Aligned_cols=36  Identities=28%  Similarity=0.194  Sum_probs=30.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      +|++.+...|+||||+|..|..+|+++|.+|=-+=.
T Consensus         2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKv   37 (451)
T COG1797           2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKV   37 (451)
T ss_pred             ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccccc
Confidence            567777799999999999999999999988754443

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.99  E-value=6.2e-05  Score=68.62  Aligned_cols=52  Identities=21%  Similarity=0.176  Sum_probs=44.3

Q ss_pred             cchhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           14 IPEGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        14 ~~~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .=.+.|+.++.++  .-.++.++|.+|+|||+++.++|...+..|.+|+.||++
T Consensus         7 tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361          7 TGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             CCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            3345688888653  235888899999999999999999999999999999999

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.95  E-value=4.4e-05  Score=67.14  Aligned_cols=38  Identities=18%  Similarity=0.163  Sum_probs=35.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ++++.|.+|+|||+++..++...++.|.+|++++++..
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~   38 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES   38 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            36788999999999999999999999999999999854

A related protein is found in archaea.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.95  E-value=7.6e-05  Score=67.14  Aligned_cols=48  Identities=25%  Similarity=0.278  Sum_probs=40.0

Q ss_pred             HHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           19 VRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        19 l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      |+.++.++  .-.++.+.|.+|+|||+++..++...+..|.+|+.||++.
T Consensus         1 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~   50 (209)
T TIGR02237         1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG   50 (209)
T ss_pred             ChhhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            34555543  2357788899999999999999999999999999999985

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=97.94  E-value=0.0002  Score=72.38  Aligned_cols=63  Identities=11%  Similarity=0.043  Sum_probs=42.2

Q ss_pred             EEEEeecCCcchHHHHHH----HHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEe
Q 017873          226 TFVCVCIPEFLSLYETER----LVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKL  301 (365)
Q Consensus       226 ~~~lVt~p~~~s~~et~~----~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~v  301 (365)
                      .+++|+.....++..+..    +.+.|+..++++.|||+|++. +.             .+...++++.+. .++|++-+
T Consensus       352 PVILV~~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~-~~-------------~~~~~~~~~le~-~gvpVLG~  416 (476)
T PRK06278        352 PVYIVSSCSKSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVY-NM-------------EIFEKVKKIAEN-SNINLIGV  416 (476)
T ss_pred             CEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCC-cH-------------HHHHHHHHHHHh-cCCCEEEe
Confidence            479999998888655544    345666779999999999993 21             123344444444 46777766


Q ss_pred             cC
Q 017873          302 PL  303 (365)
Q Consensus       302 p~  303 (365)
                      |.
T Consensus       417 ~~  418 (476)
T PRK06278        417 GK  418 (476)
T ss_pred             cc
Confidence            54

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.92  E-value=0.00021  Score=63.69  Aligned_cols=38  Identities=34%  Similarity=0.404  Sum_probs=35.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      .++-|..|+||||.+.++-.+.-..|+++-+|.+||+.
T Consensus         6 ~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAa   43 (273)
T KOG1534|consen    6 QLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAA   43 (273)
T ss_pred             EEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHH
Confidence            48889999999999999999999999999999999974

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.92  E-value=0.00019  Score=65.84  Aligned_cols=52  Identities=17%  Similarity=0.227  Sum_probs=43.4

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+.|+.+++++  ...++.+.|..|+|||+++.+++...+++|.+|+.++++..
T Consensus        11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~   64 (234)
T PRK06067         11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT   64 (234)
T ss_pred             CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence            45688888753  23477777999999999999999998889999999999854

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.91  E-value=0.00035  Score=65.35  Aligned_cols=39  Identities=15%  Similarity=0.259  Sum_probs=36.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .++.++|.+|+|||+++..+|...+++|.+|+.++++..
T Consensus        37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~   75 (259)
T TIGR03878        37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESP   75 (259)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence            577889999999999999999999999999999999953

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>TIGR02012 tigrfam_recA protein RecA

Probab=97.89  E-value=4.7e-05  Score=73.10  Aligned_cols=56  Identities=16%  Similarity=0.058  Sum_probs=45.5

Q ss_pred             hhcchhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           12 LEIPEGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        12 ~~~~~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      +.+=.+.|+.++. ++  .-+++.+.|..|+||||++.+++...++.|.+|+.||+...
T Consensus        36 i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~   94 (321)
T TIGR02012        36 ISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA   94 (321)
T ss_pred             ecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccch
Confidence            3344557999987 42  22577888999999999999999999999999999999854

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=97.89  E-value=0.00058  Score=68.96  Aligned_cols=35  Identities=31%  Similarity=0.315  Sum_probs=31.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      +++++...|+|||+++++|+.+|+++|++|..+=.
T Consensus         2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~   36 (449)
T TIGR00379         2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV   36 (449)
T ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence            56777799999999999999999999999998854

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=97.86  E-value=0.0003  Score=71.49  Aligned_cols=34  Identities=26%  Similarity=0.288  Sum_probs=29.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      .+++--.+||||++++.|+..+.++|++|..+=.
T Consensus         2 ~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp   35 (475)
T TIGR00313         2 MVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKS   35 (475)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence            4555678899999999999999999999986543

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.83  E-value=0.0002  Score=72.99  Aligned_cols=54  Identities=11%  Similarity=0.090  Sum_probs=45.6

Q ss_pred             cchhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           14 IPEGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        14 ~~~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .=.+.|+.++.++  .-.+++++|.+|+||||++..++...+++|.+|+.+.++..
T Consensus       247 tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs  302 (484)
T TIGR02655       247 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEES  302 (484)
T ss_pred             CChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence            3345688888763  22478999999999999999999999999999999999965

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.82  E-value=5.9e-05  Score=68.20  Aligned_cols=37  Identities=32%  Similarity=0.492  Sum_probs=34.6

Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           32 FVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        32 ~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      ++-|.+|+||||-.......++..|++|.+|.+||+.
T Consensus         6 vVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaN   42 (290)
T KOG1533|consen    6 VVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPAN   42 (290)
T ss_pred             EEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcc
Confidence            5679999999999999999999999999999999973

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.82  E-value=7.2e-05  Score=71.91  Aligned_cols=58  Identities=17%  Similarity=0.062  Sum_probs=46.5

Q ss_pred             hhhcchhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           11 ELEIPEGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        11 ~~~~~~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      -+.+=.+.|+.++. ++  .-+|+.+.|.+|+||||++.+++...++.|.+|+.||+....
T Consensus        35 ~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~   95 (325)
T cd00983          35 VIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHAL   95 (325)
T ss_pred             eecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccH
Confidence            34444557898887 42  235777889999999999999999999999999999997543

RecA couples ATP hydrolysis to DNA strand exchange.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.79  E-value=0.00015  Score=66.10  Aligned_cols=51  Identities=22%  Similarity=0.193  Sum_probs=40.2

Q ss_pred             hhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCC
Q 017873           17 GSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA   67 (365)
Q Consensus        17 ~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~   67 (365)
                      +.|+.++.++  ...++.+.|.+|+|||+++..++...++. |.+|+.|.++..
T Consensus         6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~   59 (226)
T PF06745_consen    6 PGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP   59 (226)
T ss_dssp             TTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-
T ss_pred             hhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC
Confidence            4678888543  22477888999999999999999999988 999999999954

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK09354 recA recombinase A; Provisional

Probab=97.73  E-value=0.00011  Score=71.27  Aligned_cols=60  Identities=15%  Similarity=0.051  Sum_probs=47.8

Q ss_pred             hhhhcchhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           10 QELEIPEGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        10 ~~~~~~~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      +-+.+=.+.|+.++. ++  .-+|+.+.|..|+||||++..++...++.|.+|+.||+....+
T Consensus        39 ~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~  101 (349)
T PRK09354         39 EVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD  101 (349)
T ss_pred             ceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchH
Confidence            334444567999987 43  2357788899999999999999999999999999999985543

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=97.71  E-value=0.00076  Score=67.46  Aligned_cols=38  Identities=26%  Similarity=0.316  Sum_probs=32.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .+++++...|+||||+++.|+.+|.++|.+|--+=..|
T Consensus         3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gp   40 (433)
T PRK13896          3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGP   40 (433)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCC
Confidence            57777779999999999999999999999986665433

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=97.70  E-value=4.6e-05  Score=77.02  Aligned_cols=70  Identities=16%  Similarity=0.091  Sum_probs=54.5

Q ss_pred             hhhhhhhcchhhHHhhh-----cC-CCeEEEEEeCCC---CCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873            7 DQDQELEIPEGSVRNIL-----EQ-DSLKWVFVGGKG---GVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (365)
Q Consensus         7 ~~~~~~~~~~~~l~~~~-----~~-~~~~i~~~sgKG---GvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~   77 (365)
                      +.-|.|...+.++....     ++ .++.|+++|..+   |+||||+|+|||..|++.|+||+++  =.+++++..|+.+
T Consensus        29 ~~~e~Yg~~kaki~~~~~~~~~~~~~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvlli--LR~Psl~~~fg~k  106 (557)
T PRK13505         29 DDLEPYGKYKAKISLDKIKALKDKKDGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVIA--LREPSLGPVFGIK  106 (557)
T ss_pred             HHHHhccCcceeeCHHHHhhhccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEE--EecCCcccccCCC
Confidence            34566777777664332     12 356778999888   9999999999999999999999999  4458898888776


Q ss_pred             c
Q 017873           78 F   78 (365)
Q Consensus        78 ~   78 (365)
                      .
T Consensus       107 g  107 (557)
T PRK13505        107 G  107 (557)
T ss_pred             C
Confidence            3

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=97.69  E-value=0.00021  Score=69.64  Aligned_cols=39  Identities=31%  Similarity=0.273  Sum_probs=33.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      -++++-|--++||||+++-||-.+-.+|++|.+||+|+.
T Consensus        74 ~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvG  112 (398)
T COG1341          74 GVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVG  112 (398)
T ss_pred             cEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCC
Confidence            345555666799999999999999999999999999975

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.68  E-value=0.0006  Score=62.37  Aligned_cols=53  Identities=17%  Similarity=0.170  Sum_probs=41.0

Q ss_pred             hhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHC------CCCEEEEeCCCCCC
Q 017873           17 GSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHN   69 (365)
Q Consensus        17 ~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~------G~rVLLiD~D~~~~   69 (365)
                      +.|+.++.++  .-.++.+.|.+|+|||+++.+++......      +.+|+.||++...+
T Consensus         6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~   66 (235)
T cd01123           6 KALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFR   66 (235)
T ss_pred             hhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcC
Confidence            4577777642  23577888999999999999999876544      47999999987533

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.65  E-value=0.00071  Score=57.29  Aligned_cols=39  Identities=26%  Similarity=0.330  Sum_probs=35.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      +++.|++|+||||++..++..++..|.+|++++++...+
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~   40 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE   40 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence            567899999999999999999999999999999996643

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.65  E-value=0.00095  Score=66.43  Aligned_cols=39  Identities=28%  Similarity=0.279  Sum_probs=31.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH-HCC-CCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLA-EVR-PSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la-~~G-~rVLLiD~D~~   67 (365)
                      .++.+-|..|+||||+.+-||..+. ..| .++.++-+|..
T Consensus       192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~  232 (420)
T PRK14721        192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSY  232 (420)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence            4666779999999999999998654 334 78899988863

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.65  E-value=0.00033  Score=64.38  Aligned_cols=52  Identities=19%  Similarity=0.189  Sum_probs=41.5

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ..+|+.++...  ...++.+.|..|+||||++..++..+++.|.+++.++++..
T Consensus        10 ~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~   63 (230)
T PRK08533         10 RDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT   63 (230)
T ss_pred             EeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            34556665531  23477888999999999999999999999999999998854

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.63  E-value=0.0013  Score=59.78  Aligned_cols=52  Identities=21%  Similarity=0.173  Sum_probs=42.0

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCC------CCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVR------PSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G------~rVLLiD~D~~   67 (365)
                      .+.|+.++.++  .-.++.+.|.+|+|||+++..+|...+..|      .+|+.||++..
T Consensus         5 ~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~   64 (226)
T cd01393           5 SKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA   64 (226)
T ss_pred             cHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence            35677777642  235777889999999999999999988777      89999999864

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PRK04328 hypothetical protein; Provisional

Probab=97.60  E-value=0.0015  Score=60.78  Aligned_cols=53  Identities=15%  Similarity=0.129  Sum_probs=43.9

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      .+.|+.++.++  .-.++.+.|.+|+|||+++..++...++.|.+++.|+++..+
T Consensus         9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~   63 (249)
T PRK04328          9 IPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHP   63 (249)
T ss_pred             chhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCH
Confidence            34688888753  235778889999999999999999988899999999998643

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.59  E-value=0.0014  Score=60.29  Aligned_cols=52  Identities=15%  Similarity=0.164  Sum_probs=43.6

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.++  .-.++.++|.+|+|||+++..++...++.|.+|+.++++..
T Consensus         7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~   60 (237)
T TIGR03877         7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH   60 (237)
T ss_pred             cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence            35688877653  23578889999999999999999998899999999999964

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.53  E-value=0.00083  Score=66.06  Aligned_cols=53  Identities=23%  Similarity=0.311  Sum_probs=43.7

Q ss_pred             chhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           15 PEGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        15 ~~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      =.+.|++++.++  .-.+++++|.+|+||||++..+|..++..|.+|+.+++...
T Consensus        67 Gi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs  121 (372)
T cd01121          67 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES  121 (372)
T ss_pred             CCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC
Confidence            345678888642  23578899999999999999999999999999999999754

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.49  E-value=0.0015  Score=67.15  Aligned_cols=56  Identities=16%  Similarity=0.204  Sum_probs=44.3

Q ss_pred             hhcchhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           12 LEIPEGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        12 ~~~~~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      +..=.+.|+.++.++  ...++.++|..|+|||+++.+++...++.|.+|+.|+++..
T Consensus       255 ~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~  312 (509)
T PRK09302        255 ISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEES  312 (509)
T ss_pred             ccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence            334455688888643  12356668999999999999999999999999999999854

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=97.48  E-value=0.031  Score=60.41  Aligned_cols=68  Identities=16%  Similarity=0.118  Sum_probs=51.4

Q ss_pred             EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCC
Q 017873          226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLP  305 (365)
Q Consensus       226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~  305 (365)
                      -+++|+.+.--.++.|.-.++.|+..|+++.|||+|... .+   .           ..++++...  .++|++.+|..+
T Consensus       216 PvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~-~~---N-----------~~~l~~~~~--~~~pv~~lp~~p  278 (817)
T PLN02974        216 PAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHG-LS---N-----------EKALLSYLS--NRVPVFVLPPVP  278 (817)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCc-cc---h-----------HHHHHHHHh--cCCcEEeCCCCC
Confidence            479999999999999999999999999999999999752 11   1           112222221  278999999887


Q ss_pred             CCCCC
Q 017873          306 EEVTG  310 (365)
Q Consensus       306 ~e~~g  310 (365)
                      ..+..
T Consensus       279 ~~~~~  283 (817)
T PLN02974        279 EDPGD  283 (817)
T ss_pred             CCcch
Confidence            77643

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.0017  Score=63.53  Aligned_cols=113  Identities=18%  Similarity=0.255  Sum_probs=76.6

Q ss_pred             chhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCce
Q 017873           15 PEGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLY   92 (365)
Q Consensus        15 ~~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~   92 (365)
                      -...|++.+.++  .--++.++|-+|+||||+-..+|..+|.++ +||.|..........+-...++..      .++++
T Consensus        78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~------~~~l~  150 (456)
T COG1066          78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLP------TNNLY  150 (456)
T ss_pred             ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCC------ccceE
Confidence            344577777652  234788999999999999999999999998 999999997655443333322210      02332


Q ss_pred             eeecCcccccccccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHH
Q 017873           93 AMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTL  165 (365)
Q Consensus        93 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l  165 (365)
                      ...                               ...++.+...+.+.++|+||||+=-+..+-.+-+.|-..
T Consensus       151 l~a-------------------------------Et~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsV  192 (456)
T COG1066         151 LLA-------------------------------ETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSV  192 (456)
T ss_pred             Eeh-------------------------------hcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcH
Confidence            211                               014666777777778999999987776655555555544

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=97.48  E-value=0.00017  Score=62.77  Aligned_cols=50  Identities=22%  Similarity=0.276  Sum_probs=41.7

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC-CCCChhhHhh
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD-PAHNLSDAFQ   75 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D-~~~~l~~~~~   75 (365)
                      ....++.++|-.|+||||+|.+|...|..+|++|-++|.| -++.|+.-+|
T Consensus        21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLg   71 (197)
T COG0529          21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLG   71 (197)
T ss_pred             CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCC
Confidence            3446788889999999999999999999999999999999 3455654444

>TIGR00416 sms DNA repair protein RadA

Probab=97.46  E-value=0.00086  Score=67.74  Aligned_cols=52  Identities=25%  Similarity=0.390  Sum_probs=43.2

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+.|++++.++  .-.+++++|.+|+||||++..+|..+++.|.+|+.++++..
T Consensus        80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs  133 (454)
T TIGR00416        80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES  133 (454)
T ss_pred             cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC
Confidence            34578887642  23578899999999999999999999999999999999854

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK11823 DNA repair protein RadA; Provisional

Probab=97.45  E-value=0.0011  Score=66.89  Aligned_cols=52  Identities=27%  Similarity=0.382  Sum_probs=43.3

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.++  .-.+++++|.+|+||||++..+|..+++.|.+|+.+++...
T Consensus        66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees  119 (446)
T PRK11823         66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES  119 (446)
T ss_pred             cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc
Confidence            34578888653  23478899999999999999999999988999999999754

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=97.42  E-value=0.001  Score=62.07  Aligned_cols=51  Identities=25%  Similarity=0.234  Sum_probs=43.9

Q ss_pred             hhHHhhhcC--CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           17 GSVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        17 ~~l~~~~~~--~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      +.|+.++.+  ....++.++|.+|+|||+++.+++...++.|.+|+.|.++..
T Consensus        10 ~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~   62 (260)
T COG0467          10 PGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES   62 (260)
T ss_pred             cchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence            457777774  344688889999999999999999999999999999999965

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=97.40  E-value=0.0011  Score=60.47  Aligned_cols=51  Identities=22%  Similarity=0.151  Sum_probs=42.2

Q ss_pred             hhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           17 GSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        17 ~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      +.|+.++.++  ...++.+.|..|+|||+++..++...++.|++|+.++++..
T Consensus         3 ~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~   55 (224)
T TIGR03880         3 PGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER   55 (224)
T ss_pred             hhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            4677877643  23467778899999999999999998889999999999864

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.39  E-value=0.0012  Score=54.25  Aligned_cols=45  Identities=24%  Similarity=0.343  Sum_probs=32.4

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHC-----CCCEEEEeCCCCCChh
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEV-----RPSVLIISTDPAHNLS   71 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~-----G~rVLLiD~D~~~~l~   71 (365)
                      ...++++.|..|+|||+++.+++..+...     ..+|+.+++....+..
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPR   52 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHH
Confidence            45678999999999999999999999864     5678887776554433

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.37  E-value=0.00026  Score=60.90  Aligned_cols=37  Identities=27%  Similarity=0.311  Sum_probs=34.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++.++|-.|+||||+|..|...|...|.+|.++|.|
T Consensus         3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD   39 (156)
T PF01583_consen    3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGD   39 (156)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence            5778899999999999999999999999999999999

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=97.37  E-value=0.0013  Score=63.32  Aligned_cols=58  Identities=16%  Similarity=0.153  Sum_probs=44.0

Q ss_pred             hhcchhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHC------CCCEEEEeCCCCCC
Q 017873           12 LEIPEGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHN   69 (365)
Q Consensus        12 ~~~~~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~------G~rVLLiD~D~~~~   69 (365)
                      +....+.++.++.++  ...++.++|.+|+|||+++..+|...+..      +.+|+.||++...+
T Consensus        84 ~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~  149 (317)
T PRK04301         84 ITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFR  149 (317)
T ss_pred             cCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcC
Confidence            334456788888753  34577888999999999999999887643      35899999996433

>PRK07667 uridine kinase; Provisional

Probab=97.35  E-value=0.0004  Score=61.93  Aligned_cols=40  Identities=20%  Similarity=0.097  Sum_probs=36.9

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .+.++.++|-+|+||||+|..|+..+...|.+|.++++|.
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd   55 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD   55 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence            4467889999999999999999999999999999999995

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=97.34  E-value=0.0014  Score=62.99  Aligned_cols=54  Identities=24%  Similarity=0.172  Sum_probs=41.6

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPAHN   69 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~~~   69 (365)
                      .+.|+.++.++  ...|+-+.|..|+|||+++..+|...+.      .|.+|+.||+....+
T Consensus        82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~  143 (313)
T TIGR02238        82 SQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFR  143 (313)
T ss_pred             CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCC
Confidence            34588888752  3357888899999999999999986552      357999999986533

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate

Probab=97.34  E-value=0.00033  Score=70.19  Aligned_cols=51  Identities=20%  Similarity=0.092  Sum_probs=43.8

Q ss_pred             CCeEEEEEeCCC---CCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhccc
Q 017873           26 DSLKWVFVGGKG---GVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRF   78 (365)
Q Consensus        26 ~~~~i~~~sgKG---GvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~   78 (365)
                      .++.|.++|--+   |+||||+|++||..|++.|+||+++  =.+++++..||.+.
T Consensus        37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~--LR~PSlg~~fg~kg   90 (524)
T cd00477          37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC--LREPSLGPTFGIKG   90 (524)
T ss_pred             CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE--EecCCcCcccCCCC
Confidence            356677999888   9999999999999999999999988  44588888888764

FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=97.33  E-value=0.00095  Score=70.94  Aligned_cols=59  Identities=14%  Similarity=0.026  Sum_probs=47.1

Q ss_pred             hhhcchhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           11 ELEIPEGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        11 ~~~~~~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      -+..=.+.|+.++. ++  .-.++.+.|..|+||||++..++...+..|.+|+.||+....+
T Consensus        40 ~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~  101 (790)
T PRK09519         40 VIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALD  101 (790)
T ss_pred             eecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchh
Confidence            33344556898887 32  2467888899999999999999999889999999999986544

>PHA02542 41 41 helicase; Provisional

Probab=97.32  E-value=0.00035  Score=70.75  Aligned_cols=60  Identities=17%  Similarity=0.075  Sum_probs=46.3

Q ss_pred             chhhHHhhhcC--CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHh
Q 017873           15 PEGSVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAF   74 (365)
Q Consensus        15 ~~~~l~~~~~~--~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~   74 (365)
                      =.+.|+.++.+  ..-.+++++|.+|+||||++.|+|..+++.|++|++++++-. ..+...+
T Consensus       175 G~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl  237 (473)
T PHA02542        175 KLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRI  237 (473)
T ss_pred             CcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHH
Confidence            34567887733  223478999999999999999999999999999999999954 3344333

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=97.27  E-value=0.0027  Score=61.70  Aligned_cols=53  Identities=17%  Similarity=0.081  Sum_probs=41.0

Q ss_pred             hhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH----C--CCCEEEEeCCCCCC
Q 017873           17 GSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE----V--RPSVLIISTDPAHN   69 (365)
Q Consensus        17 ~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~----~--G~rVLLiD~D~~~~   69 (365)
                      +.|+.++.++  ...|+-+.|..|+|||+++..+|...+.    .  +.+|+.||+....+
T Consensus       113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~  173 (344)
T PLN03187        113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFR  173 (344)
T ss_pred             HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCC
Confidence            3588888753  3468888999999999999999987653    1  36999999986433

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.27  E-value=0.00087  Score=61.04  Aligned_cols=33  Identities=30%  Similarity=0.399  Sum_probs=27.2

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ...+++.|++|+||||+|.+++       .++++++.|..
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~   44 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMS   44 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcC-------CCCEEEecccc
Confidence            3457888999999999988873       46999999964

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK04296 thymidine kinase; Provisional

Probab=97.26  E-value=0.00076  Score=60.06  Aligned_cols=34  Identities=26%  Similarity=0.183  Sum_probs=31.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEE
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII   62 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLi   62 (365)
                      .|.++.|..|+||||.+..++..++..|++|+++
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~   36 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF   36 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence            4778899999999999999999999999999999

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=97.23  E-value=0.0049  Score=53.26  Aligned_cols=35  Identities=23%  Similarity=0.117  Sum_probs=29.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      |.+++|. |.||||.|..+|...+.+|+||+++=+=
T Consensus         5 i~vy~g~-G~Gkt~~a~g~~~ra~~~g~~v~~vQFl   39 (159)
T cd00561           5 IQVYTGN-GKGKTTAALGLALRALGHGYRVGVVQFL   39 (159)
T ss_pred             EEEECCC-CCCHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence            4455555 9999999999999999999999996553

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.22  E-value=0.00063  Score=59.46  Aligned_cols=39  Identities=31%  Similarity=0.351  Sum_probs=35.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .++++.|-+|+||||++.++|..+...|.++.++|.|..
T Consensus         5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~   43 (175)
T PRK00889          5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV   43 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence            477777999999999999999999988999999999953

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=97.22  E-value=0.0023  Score=61.33  Aligned_cols=56  Identities=18%  Similarity=0.184  Sum_probs=43.1

Q ss_pred             hhcchhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCC
Q 017873           12 LEIPEGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA   67 (365)
Q Consensus        12 ~~~~~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~   67 (365)
                      .....+.++.++.++  ...++.+.|.+|+|||+++..+|...+.      .+.+|+.||+...
T Consensus        77 ~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~  140 (310)
T TIGR02236        77 ITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENT  140 (310)
T ss_pred             ecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCC
Confidence            344556788888753  3467788899999999999999988763      2348999999864

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain

Probab=97.17  E-value=0.0052  Score=56.32  Aligned_cols=39  Identities=26%  Similarity=0.269  Sum_probs=33.9

Q ss_pred             EEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           30 WVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        30 i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      |.+++| -.|.||=.+|++++..|..+|++|..+=+||--
T Consensus         3 i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYl   42 (255)
T cd03113           3 IFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYL   42 (255)
T ss_pred             EEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccc
Confidence            445555 789999999999999999999999999999753

The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.

>PRK08233 hypothetical protein; Provisional

Probab=97.17  E-value=0.0013  Score=57.51  Aligned_cols=37  Identities=24%  Similarity=0.231  Sum_probs=29.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+++++|.+|+||||+|..||..+.  +..++..|.+..
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~~~   40 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRYDF   40 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCEEc
Confidence            5677778889999999999998874  346788887754

>PRK06696 uridine kinase; Validated

Probab=97.15  E-value=0.00074  Score=61.61  Aligned_cols=41  Identities=24%  Similarity=0.182  Sum_probs=36.9

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      +.+.++.++|.+|+||||+|..|+..|...|.+|+.+.+|-
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Dd   60 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDD   60 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccc
Confidence            45678899999999999999999999998899999988883

>PRK07952 DNA replication protein DnaC; Validated

Probab=97.14  E-value=0.00055  Score=63.42  Aligned_cols=36  Identities=31%  Similarity=0.329  Sum_probs=33.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      .-++++|++|+|||++++++|..+...|++|+++++
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~  135 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV  135 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence            467899999999999999999999999999999964

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.14  E-value=0.0044  Score=63.62  Aligned_cols=52  Identities=13%  Similarity=0.132  Sum_probs=42.8

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~   67 (365)
                      .+.|+.++.++  .-.++.+.|-+|+|||+++.+++...++. |.+|+.|+++..
T Consensus        17 I~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~   71 (509)
T PRK09302         17 IEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEES   71 (509)
T ss_pred             chhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence            44688888642  23577888999999999999999988877 999999999954

>PRK13506 formate--tetrahydrofolate ligase; Provisional

Probab=97.13  E-value=0.00067  Score=68.63  Aligned_cols=52  Identities=15%  Similarity=0.048  Sum_probs=44.5

Q ss_pred             CCeEEEEEeCCC---CCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccC
Q 017873           26 DSLKWVFVGGKG---GVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFT   79 (365)
Q Consensus        26 ~~~~i~~~sgKG---GvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~   79 (365)
                      .++.|.++|--+   |+||||+|++||..+++.|+||  ||+=.+++++..||.+.+
T Consensus        53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~--i~~LR~Pslg~~fg~kgg  107 (578)
T PRK13506         53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV--CACIRQPSMGPVFGVKGG  107 (578)
T ss_pred             CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce--EEEeccCCcCCccCCCCC
Confidence            356677888888   9999999999999999999999  777566999999987643

>PTZ00035 Rad51 protein; Provisional

Probab=97.10  E-value=0.0036  Score=60.79  Aligned_cols=52  Identities=19%  Similarity=0.123  Sum_probs=40.5

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.++  ...++.+.|..|+||||++..++.....      .+.+|+.||+...
T Consensus       104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~  163 (337)
T PTZ00035        104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT  163 (337)
T ss_pred             cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC
Confidence            34588888753  3457788899999999999999877652      4568999999854

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]

Probab=97.10  E-value=0.0054  Score=58.22  Aligned_cols=37  Identities=38%  Similarity=0.389  Sum_probs=30.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH----CC------CCEEEEeCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAE----VR------PSVLIISTDP   66 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~----~G------~rVLLiD~D~   66 (365)
                      .+|+-|-||+||||++.-+..+|+.    .|      .+|+.|++..
T Consensus        91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl  137 (402)
T COG3598          91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLEL  137 (402)
T ss_pred             eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEecc
Confidence            4567799999999999999999883    34      3788998863

>PRK00089 era GTPase Era; Reviewed

Probab=97.09  E-value=0.081  Score=50.08  Aligned_cols=38  Identities=13%  Similarity=0.146  Sum_probs=24.7

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|.............+++.+...+.|+. +|+|++
T Consensus        86 D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvi-lVlNKi  123 (292)
T PRK00089         86 DLVLFVVDADEKIGPGDEFILEKLKKVKTPVI-LVLNKI  123 (292)
T ss_pred             CEEEEEEeCCCCCChhHHHHHHHHhhcCCCEE-EEEECC
Confidence            45666666554222345566777777777765 889999

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=97.06  E-value=0.0011  Score=60.78  Aligned_cols=50  Identities=16%  Similarity=0.236  Sum_probs=41.1

Q ss_pred             hHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCC
Q 017873           18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA   67 (365)
Q Consensus        18 ~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~   67 (365)
                      +|+.++.+ ..-.+++++|.+|+|||+++.++|..++.. |.+|+.++++..
T Consensus         2 ~LD~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~   53 (242)
T cd00984           2 DLDNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS   53 (242)
T ss_pred             chhhhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence            46666652 122578999999999999999999999987 999999999954

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PRK05973 replicative DNA helicase; Provisional

Probab=97.03  E-value=0.00089  Score=61.67  Aligned_cols=39  Identities=18%  Similarity=0.250  Sum_probs=36.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+++++|.+|+|||+++.++|...++.|++|++++++..
T Consensus        65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes  103 (237)
T PRK05973         65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT  103 (237)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence            477889999999999999999999999999999999965

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=97.00  E-value=0.015  Score=55.83  Aligned_cols=59  Identities=17%  Similarity=0.081  Sum_probs=39.7

Q ss_pred             hhhhcchhhHHhhhcCCCe---EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           10 QELEIPEGSVRNILEQDSL---KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        10 ~~~~~~~~~l~~~~~~~~~---~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      +.+.+=.+.|+..+..++.   +|+-+.|..|+||||++..+...+.+.|..++.||.....
T Consensus        32 ~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~l   93 (322)
T PF00154_consen   32 EVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHAL   93 (322)
T ss_dssp             -EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS--
T ss_pred             ceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccc
Confidence            3344444568887763222   3554556789999999999999888899999999998653

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.99  E-value=0.0024  Score=51.89  Aligned_cols=40  Identities=25%  Similarity=0.293  Sum_probs=33.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      ..+++.|..|+||||++..+|..+...++.++.++++...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~   42 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL   42 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence            3566778899999999999999998877789999988553

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=96.99  E-value=0.006  Score=59.32  Aligned_cols=54  Identities=19%  Similarity=0.143  Sum_probs=40.4

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPAHN   69 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~~~   69 (365)
                      .+.|+.++.++  ...++.+.|.+|+|||+++..+|...+.      .+.+|+.||+....+
T Consensus       109 ~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~  170 (342)
T PLN03186        109 SRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFR  170 (342)
T ss_pred             CHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCcc
Confidence            44688877653  3457788899999999999999976552      224899999996533

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.98  E-value=0.0038  Score=63.71  Aligned_cols=52  Identities=15%  Similarity=0.084  Sum_probs=42.8

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~   67 (365)
                      .+.|+.++.++  .-.++.++|-+|+||||+|..++..-+++ |.+++.|.++..
T Consensus         7 I~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~   61 (484)
T TIGR02655         7 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES   61 (484)
T ss_pred             chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            35688888753  34678888999999999999999987766 999999999844

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=96.98  E-value=0.0014  Score=58.57  Aligned_cols=41  Identities=24%  Similarity=0.310  Sum_probs=35.9

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ...++++.|..|+||||++..++..+...|..++++|.|.-
T Consensus        23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~   63 (198)
T PRK03846         23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV   63 (198)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence            34577777999999999999999999988999999999863

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=96.96  E-value=0.0011  Score=58.50  Aligned_cols=36  Identities=36%  Similarity=0.325  Sum_probs=33.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      |+.++|..|+||||+|..++..+...|.++.+|..|
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~D   36 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLD   36 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehh
Confidence            467889999999999999999999999999999999

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=96.94  E-value=0.00083  Score=62.89  Aligned_cols=55  Identities=20%  Similarity=0.135  Sum_probs=43.3

Q ss_pred             hcchhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCC
Q 017873           13 EIPEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA   67 (365)
Q Consensus        13 ~~~~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~   67 (365)
                      ..-.+.|+.++.+ ....+++++|.+|+||||++.++|..++.. |.+|+.++++..
T Consensus        14 ~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~   70 (271)
T cd01122          14 WWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP   70 (271)
T ss_pred             CCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC
Confidence            3344567777642 222477899999999999999999999877 999999999853

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=96.93  E-value=0.0075  Score=55.51  Aligned_cols=38  Identities=21%  Similarity=0.289  Sum_probs=32.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH------------CCCCEEEEeCCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAE------------VRPSVLIISTDPA   67 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~------------~G~rVLLiD~D~~   67 (365)
                      +.++.|.||+||||++..+|.++|.            .+.+|++++++-.
T Consensus         3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~   52 (239)
T cd01125           3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDP   52 (239)
T ss_pred             eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCC
Confidence            4578899999999999999999873            4568999999843

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PHA00729 NTP-binding motif containing protein

Probab=96.91  E-value=0.0017  Score=59.25  Aligned_cols=27  Identities=26%  Similarity=0.213  Sum_probs=23.1

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      ++.-+++.|.+||||||+|.++|..+.
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            445677889999999999999999875

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=96.91  E-value=0.0089  Score=52.32  Aligned_cols=36  Identities=22%  Similarity=0.158  Sum_probs=30.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      |.++.| .|.||||.|..+|..++.+|+||+++=+--
T Consensus         8 i~v~~g-~GkGKtt~a~g~a~ra~~~g~~v~ivQFlK   43 (173)
T TIGR00708         8 IIVHTG-NGKGKTTAAFGMALRALGHGKKVGVIQFIK   43 (173)
T ss_pred             EEEECC-CCCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence            344444 899999999999999999999999996653

Alternate name: corrinoid adenosyltransferase.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=96.90  E-value=0.0011  Score=61.58  Aligned_cols=37  Identities=38%  Similarity=0.487  Sum_probs=33.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ++++.|-+|+||||+|..||..+...|.+|.++|.|.
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~   37 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL   37 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH
Confidence            4688999999999999999999998999999998874

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>COG1159 Era GTPase [General function prediction only]

Probab=96.90  E-value=0.062  Score=50.65  Aligned_cols=44  Identities=16%  Similarity=0.181  Sum_probs=30.3

Q ss_pred             HHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          217 KQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       217 ~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.++|  ++-+++|+..+..--...+..++.|+....|+. +++|++
T Consensus        81 ~sl~d--vDlilfvvd~~~~~~~~d~~il~~lk~~~~pvi-l~iNKI  124 (298)
T COG1159          81 SALKD--VDLILFVVDADEGWGPGDEFILEQLKKTKTPVI-LVVNKI  124 (298)
T ss_pred             HHhcc--CcEEEEEEeccccCCccHHHHHHHHhhcCCCeE-EEEEcc
Confidence            34555  456667777665444577778888888677775 778998

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=96.88  E-value=0.0019  Score=54.79  Aligned_cols=56  Identities=25%  Similarity=0.381  Sum_probs=43.8

Q ss_pred             HhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC-CCChhhHhhc
Q 017873           20 RNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQ   76 (365)
Q Consensus        20 ~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~-~~~l~~~~~~   76 (365)
                      ..++++++.. +.+.|-.|+||||+|++|..+|-++|+-+-.+|.|. ++.|..-++.
T Consensus        24 q~l~~qkGcv-iWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F   80 (207)
T KOG0635|consen   24 QKLLKQKGCV-IWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGF   80 (207)
T ss_pred             HHHhcCCCcE-EEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCc
Confidence            4456666654 456688999999999999999999999999999993 4666544443

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.88  E-value=0.0011  Score=53.86  Aligned_cols=31  Identities=35%  Similarity=0.424  Sum_probs=24.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++++|..|+||||+|..||..+   |..+  ++.|
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~---~~~~--i~~d   31 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL---GFPV--ISMD   31 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH---TCEE--EEEH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH---CCeE--EEec
Confidence            57889999999999999999877   5544  4444

...

>PRK05439 pantothenate kinase; Provisional

Probab=96.86  E-value=0.0026  Score=60.95  Aligned_cols=53  Identities=26%  Similarity=0.394  Sum_probs=40.6

Q ss_pred             hcchhhHHhhhc---CCCeEEEEEeCCCCCcHHHHHHHHHHHHHH--CCCCEEEEeCC
Q 017873           13 EIPEGSVRNILE---QDSLKWVFVGGKGGVGKTTCSSILSILLAE--VRPSVLIISTD   65 (365)
Q Consensus        13 ~~~~~~l~~~~~---~~~~~i~~~sgKGGvGKTT~aa~lA~~la~--~G~rVLLiD~D   65 (365)
                      ..+...+..++.   .+...++.++|-.|+||||+|..|+..+.+  .|.+|.+|..|
T Consensus        68 ~~~~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~D  125 (311)
T PRK05439         68 QRLQAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTD  125 (311)
T ss_pred             HHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecc
Confidence            333444444553   234567889999999999999999999876  47899999999

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=96.84  E-value=0.0015  Score=55.77  Aligned_cols=38  Identities=24%  Similarity=0.352  Sum_probs=34.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ++++.|..|+||||+|..++..+...|.++.++|.|..
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~   38 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV   38 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence            46788999999999999999999988999999998853

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=96.84  E-value=0.013  Score=54.86  Aligned_cols=38  Identities=21%  Similarity=0.112  Sum_probs=30.8

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|..+.......+..++..+...++|+. +++|+.
T Consensus        89 D~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i-ivvNK~  126 (268)
T cd04170          89 DAALVVVSAQSGVEVGTEKLWEFADEAGIPRI-IFINKM  126 (268)
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECC
Confidence            46778888777666778888899999998865 799999

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.82  E-value=0.0024  Score=58.25  Aligned_cols=52  Identities=21%  Similarity=0.225  Sum_probs=42.5

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.++  .-.++.+.|.+|+||||++.+++...++.|.+|+.++++..
T Consensus         6 i~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~   59 (229)
T TIGR03881         6 VEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES   59 (229)
T ss_pred             hhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence            35688877542  23577888999999999999999988889999999999744

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PF13479 AAA_24: AAA domain

Probab=96.82  E-value=0.0052  Score=55.70  Aligned_cols=31  Identities=35%  Similarity=0.501  Sum_probs=26.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ..+++-|.+|+||||++..+        .++++||+|..
T Consensus         4 ~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g   34 (213)
T PF13479_consen    4 IKILIYGPPGSGKTTLAASL--------PKPLFIDTENG   34 (213)
T ss_pred             eEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCC
Confidence            34566799999999998887        77999999976

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=96.80  E-value=0.012  Score=54.86  Aligned_cols=59  Identities=19%  Similarity=0.164  Sum_probs=42.6

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCCCChhhHh
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPAHNLSDAF   74 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~~~l~~~~   74 (365)
                      .+.||.++.++  ...|.=+.|.+|+|||.++..||.....      .+.+|+.||++-..+...+.
T Consensus        24 ~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~   90 (256)
T PF08423_consen   24 CKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ   90 (256)
T ss_dssp             SHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH
T ss_pred             CHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH
Confidence            34688888653  2247766789999999999999987652      35689999999765554443

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=96.77  E-value=0.0013  Score=58.14  Aligned_cols=39  Identities=33%  Similarity=0.394  Sum_probs=31.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH----------CCCCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAE----------VRPSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~----------~G~rVLLiD~D~~   67 (365)
                      .+.++.|.+|+||||++.++|..++.          .+.+|+.|+++..
T Consensus        33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~   81 (193)
T PF13481_consen   33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS   81 (193)
T ss_dssp             SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence            47788899999999999999999996          5789999999965

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.76  E-value=0.11  Score=46.83  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=34.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++.+-|-.|+|||-++..+++-+-..|++|..+.+.
T Consensus        29 sL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe   65 (235)
T COG2874          29 SLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTE   65 (235)
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEec
Confidence            5778889999999999999999999999999999987

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=96.76  E-value=0.0026  Score=59.33  Aligned_cols=52  Identities=19%  Similarity=0.190  Sum_probs=41.6

Q ss_pred             hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCC
Q 017873           16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~   67 (365)
                      .+.|++++.+ ....++++.|.+|+|||+++.++|..++.. |++|+.++++-.
T Consensus         6 ~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~   59 (259)
T PF03796_consen    6 FPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMS   59 (259)
T ss_dssp             THHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-
T ss_pred             hHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCC
Confidence            3567777753 223588999999999999999999999987 699999999954

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.75  E-value=0.012  Score=52.94  Aligned_cols=47  Identities=23%  Similarity=0.153  Sum_probs=38.5

Q ss_pred             hhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           21 NILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        21 ~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      ..++.++.+++.+.|-.|+||||+..+++..+. .+.+|.++..|+..
T Consensus        15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~   61 (207)
T TIGR00073        15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVIT   61 (207)
T ss_pred             HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCCC
Confidence            345566788888999999999999999988765 45799999988753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=96.75  E-value=0.0022  Score=55.19  Aligned_cols=37  Identities=27%  Similarity=0.146  Sum_probs=32.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      |+.+.|..|+||||++..++..+..+|+||.+|..|.
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~   37 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDH   37 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            3556788899999999999999999999999998763

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=96.74  E-value=0.002  Score=60.07  Aligned_cols=36  Identities=31%  Similarity=0.326  Sum_probs=32.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      .=+++.|+.|||||.+|+++|..+.+.|.+|+.+.+
T Consensus       106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~  141 (254)
T COG1484         106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA  141 (254)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence            445777999999999999999999988999999976

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=96.73  E-value=0.011  Score=56.97  Aligned_cols=52  Identities=17%  Similarity=0.119  Sum_probs=39.5

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH---CC---CCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE---VR---PSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~---~G---~rVLLiD~D~~   67 (365)
                      .+.|+.++.++  ...|+.+.|..|+||||++..++...+.   .|   .+|+.||+...
T Consensus        82 ~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~  141 (316)
T TIGR02239        82 SKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT  141 (316)
T ss_pred             CHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC
Confidence            34688877653  3467888899999999999999875432   33   48999999865

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PF13245 AAA_19: Part of AAA domain

Probab=96.70  E-value=0.0031  Score=47.53  Aligned_cols=39  Identities=26%  Similarity=0.256  Sum_probs=32.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHC----CCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEV----RPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~----G~rVLLiD~D~   66 (365)
                      ..+.++.|-+|+|||+++++.+..+...    |++|+++....
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~   52 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTR   52 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCH
Confidence            4567779999999999999999888865    89999997763

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.70  E-value=0.0032  Score=53.26  Aligned_cols=37  Identities=32%  Similarity=0.142  Sum_probs=29.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEE-EEeCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVL-IISTDP   66 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVL-LiD~D~   66 (365)
                      +|.|+ |.-|+||||++..|...|.++|++|. +.+.|+
T Consensus         2 vv~Vv-G~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~   39 (140)
T PF03205_consen    2 VVQVV-GPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH   39 (140)
T ss_dssp             EEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred             EEEEE-CCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence            34455 55689999999999999999999999 999998

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=96.69  E-value=0.0031  Score=63.12  Aligned_cols=52  Identities=17%  Similarity=0.187  Sum_probs=42.4

Q ss_pred             hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.+ .+-.+++++|.+|+|||+++.++|..+| +.|++|++++++-.
T Consensus       181 ~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~  234 (421)
T TIGR03600       181 LPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS  234 (421)
T ss_pred             ChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            4567777753 2234789999999999999999999998 78999999999843

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>PRK06762 hypothetical protein; Provisional

Probab=96.68  E-value=0.0022  Score=55.33  Aligned_cols=35  Identities=31%  Similarity=0.471  Sum_probs=29.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++++++|..|+||||+|..|+..+   |..+.+++.|
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D   36 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQD   36 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHH
Confidence            4677888999999999999999887   4568888876

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.66  E-value=0.0026  Score=57.62  Aligned_cols=49  Identities=14%  Similarity=0.271  Sum_probs=39.3

Q ss_pred             hhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        17 ~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..++.++.......+++.|+.|+|||+++..++..+.+.|.+++.++++
T Consensus        27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~   75 (226)
T TIGR03420        27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA   75 (226)
T ss_pred             HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence            3455554445566778889999999999999999988888899999875

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>cd04163 Era Era subfamily

Probab=96.64  E-value=0.027  Score=47.25  Aligned_cols=38  Identities=13%  Similarity=0.060  Sum_probs=24.8

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|..+..............+...+.|+ -+|+|+.
T Consensus        84 d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~  121 (168)
T cd04163          84 DLVLFVVDASEPIGEGDEFILELLKKSKTPV-ILVLNKI  121 (168)
T ss_pred             CEEEEEEECCCccCchHHHHHHHHHHhCCCE-EEEEEch
Confidence            4566666655433344556667777777776 5899998

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.61  E-value=0.0024  Score=55.62  Aligned_cols=58  Identities=26%  Similarity=0.286  Sum_probs=41.0

Q ss_pred             hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873            9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      +++++.+...|. ....+..+++++.|..|+|||++...+...+...+.-++-+++++.
T Consensus         6 ~~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~   63 (185)
T PF13191_consen    6 EEEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS   63 (185)
T ss_dssp             HHHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred             HHHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence            456777777777 6666677899999999999999999999999977544888888876

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.61  E-value=0.0026  Score=56.11  Aligned_cols=36  Identities=25%  Similarity=0.242  Sum_probs=30.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      -+++.|..|+|||.+|+++|..+...|++|+.+++.
T Consensus        49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~   84 (178)
T PF01695_consen   49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS   84 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred             EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence            356667899999999999999999999999999863

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=96.58  E-value=0.0051  Score=56.34  Aligned_cols=37  Identities=24%  Similarity=0.063  Sum_probs=32.3

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      |+++.+.|..|+||||++.+++..|..+|+||.++..
T Consensus         1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~   37 (229)
T PRK14494          1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH   37 (229)
T ss_pred             CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence            3566666777999999999999999999999999954

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=96.58  E-value=0.0054  Score=59.90  Aligned_cols=39  Identities=26%  Similarity=0.331  Sum_probs=34.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHH--HHCCCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILL--AEVRPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~l--a~~G~rVLLiD~D~   66 (365)
                      +.+++++|-+|+|||.++.++|..+  ...+.+++++..+.
T Consensus         1 K~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~   41 (352)
T PF09848_consen    1 KQVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNH   41 (352)
T ss_pred             CeEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecc
Confidence            4688999999999999999999999  77888888887764

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>PRK06526 transposase; Provisional

Probab=96.56  E-value=0.0016  Score=60.80  Aligned_cols=36  Identities=28%  Similarity=0.259  Sum_probs=31.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      .-+++.|++|+|||++|.++|..+.+.|++|+.+.+
T Consensus        99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~  134 (254)
T PRK06526         99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA  134 (254)
T ss_pred             ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence            346788999999999999999999999999988544

>PRK08506 replicative DNA helicase; Provisional

Probab=96.53  E-value=0.0044  Score=62.99  Aligned_cols=53  Identities=11%  Similarity=0.128  Sum_probs=42.9

Q ss_pred             chhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           15 PEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        15 ~~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      -.+.|+.+..+ .+-.+++++|.+|+|||+++.++|..+++.|++|++++++-.
T Consensus       178 G~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs  231 (472)
T PRK08506        178 GFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMP  231 (472)
T ss_pred             ChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCC
Confidence            34457777643 223488999999999999999999999999999999999954

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.53  E-value=0.0049  Score=50.62  Aligned_cols=45  Identities=24%  Similarity=0.251  Sum_probs=36.5

Q ss_pred             hcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        23 ~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      +.......+++.|..|+||||++..++..+...+.++..+++...
T Consensus        14 ~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~   58 (151)
T cd00009          14 LELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL   58 (151)
T ss_pred             HhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence            333345677888999999999999999999888888998887643

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.52  E-value=0.0044  Score=54.13  Aligned_cols=39  Identities=26%  Similarity=0.275  Sum_probs=34.3

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ..++++.|-.|+||||++..++..+...+..+.++|.|.
T Consensus         7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~   45 (176)
T PRK05541          7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE   45 (176)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence            457788899999999999999999998888899998763

>PRK05595 replicative DNA helicase; Provisional

Probab=96.50  E-value=0.0046  Score=62.40  Aligned_cols=54  Identities=17%  Similarity=0.116  Sum_probs=42.3

Q ss_pred             cchhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873           14 IPEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (365)
Q Consensus        14 ~~~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~   67 (365)
                      .-.+.|+.++.+ ..-.+++++|.+|+|||+++.++|..+| ++|++|+++++.-.
T Consensus       186 tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms  241 (444)
T PRK05595        186 SGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS  241 (444)
T ss_pred             CChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            334457777642 2234788999999999999999999877 67999999999843

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.48  E-value=0.004  Score=57.32  Aligned_cols=50  Identities=16%  Similarity=0.290  Sum_probs=40.9

Q ss_pred             hhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        17 ~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ..++++........+++.|..|+|||+++.+++..+...|++|..+.+|.
T Consensus        34 ~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         34 AALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            34555554444457788999999999999999999998999999999974

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.45  E-value=0.0026  Score=56.77  Aligned_cols=40  Identities=25%  Similarity=0.257  Sum_probs=35.6

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      |.+++++|-+|+||||+|-+||..|.+.+.+|..+..|-.
T Consensus         1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~   40 (261)
T COG4088           1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL   40 (261)
T ss_pred             CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhh
Confidence            3567889999999999999999999999999998888743

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.43  E-value=0.0061  Score=54.81  Aligned_cols=39  Identities=28%  Similarity=0.294  Sum_probs=33.3

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ...++.++|.+|+||||++..|+..+  .+..+.+++.|.-
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~   43 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSY   43 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCcc
Confidence            45678889999999999999999988  4668999999853

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=96.42  E-value=0.16  Score=47.98  Aligned_cols=54  Identities=19%  Similarity=0.097  Sum_probs=42.8

Q ss_pred             hHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh
Q 017873           18 SVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (365)
Q Consensus        18 ~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~   71 (365)
                      .|+.++.++  ..+|+=+-|-.|+||||+|..++......|.+|..||+-..-+..
T Consensus        48 ~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~  103 (279)
T COG0468          48 ALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPE  103 (279)
T ss_pred             hHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHH
Confidence            467777643  235776668999999999999999999999999999998654433

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=96.41  E-value=0.035  Score=49.38  Aligned_cols=37  Identities=16%  Similarity=0.121  Sum_probs=31.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .+.+-+-.|.||||.|..+|..++.+|.||+++=+=-
T Consensus        24 ~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlK   60 (191)
T PRK05986         24 LLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIK   60 (191)
T ss_pred             eEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence            3444456789999999999999999999999998753

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=96.40  E-value=0.0067  Score=53.39  Aligned_cols=41  Identities=22%  Similarity=0.278  Sum_probs=36.0

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      +...++++.|..|+||||++..++..+...|..++++|.|.
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~   56 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN   56 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH
Confidence            34568888899999999999999999988888899999884

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.38  E-value=0.0062  Score=44.79  Aligned_cols=32  Identities=28%  Similarity=0.423  Sum_probs=28.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ++++|..|+||||++..++..+  .|.++.++|.
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~   33 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE   33 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence            5678999999999999999999  6788888876

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK08760 replicative DNA helicase; Provisional

Probab=96.37  E-value=0.0056  Score=62.28  Aligned_cols=52  Identities=13%  Similarity=0.210  Sum_probs=41.3

Q ss_pred             hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~   67 (365)
                      .+.|+.+..+ .+-.++++.|.+|+|||+++.++|..+| +.|++|++++++-.
T Consensus       216 ~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs  269 (476)
T PRK08760        216 YNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS  269 (476)
T ss_pred             cHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCC
Confidence            3456666643 2224889999999999999999999988 45999999999854

>PRK12377 putative replication protein; Provisional

Probab=96.37  E-value=0.0051  Score=57.13  Aligned_cols=37  Identities=22%  Similarity=0.314  Sum_probs=33.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .-++++|..|+|||.++.++|..+.+.|++|+.++..
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~  138 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP  138 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence            4578889999999999999999999999999998774

>PRK08006 replicative DNA helicase; Provisional

Probab=96.37  E-value=0.0061  Score=61.90  Aligned_cols=55  Identities=20%  Similarity=0.155  Sum_probs=43.3

Q ss_pred             hcchhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873           13 EIPEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (365)
Q Consensus        13 ~~~~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~   67 (365)
                      .+-++.|+.+..+ ..-.++++.|.+|+|||++|.|+|..+| ++|++|+++++.-.
T Consensus       208 ~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~  264 (471)
T PRK08006        208 NTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMP  264 (471)
T ss_pred             cCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence            3344567777643 2335888999999999999999999998 56999999999843

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=96.36  E-value=0.0082  Score=51.90  Aligned_cols=39  Identities=31%  Similarity=0.246  Sum_probs=33.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      |+++.+.|..|+||||++..+...+...|++|.+|-.|.
T Consensus         1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~   39 (159)
T cd03116           1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDH   39 (159)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence            356777788899999999999999999999999987664

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.33  E-value=0.0084  Score=54.87  Aligned_cols=50  Identities=22%  Similarity=0.262  Sum_probs=38.2

Q ss_pred             hHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEE-EeCCCC
Q 017873           18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLI-ISTDPA   67 (365)
Q Consensus        18 ~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLL-iD~D~~   67 (365)
                      .|...... ....++.++|..|+||||++..++..+...+..+.+ +.+|.-
T Consensus        22 ~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~   73 (229)
T PRK09270         22 RLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF   73 (229)
T ss_pred             HHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence            34433333 455688889999999999999999999987776666 888753

>TIGR00665 DnaB replicative DNA helicase

Probab=96.33  E-value=0.0071  Score=60.76  Aligned_cols=52  Identities=12%  Similarity=0.104  Sum_probs=41.9

Q ss_pred             hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.+ ..-.+++++|.+|+|||+++.++|..++. .|++|++++++-.
T Consensus       182 ~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~  235 (434)
T TIGR00665       182 FTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMS  235 (434)
T ss_pred             chhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCC
Confidence            4457777642 22348899999999999999999999885 6999999999954

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>PRK06749 replicative DNA helicase; Provisional

Probab=96.31  E-value=0.0064  Score=61.01  Aligned_cols=52  Identities=17%  Similarity=0.214  Sum_probs=42.5

Q ss_pred             hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+.|+.+..+ ..-.++++.|.+|+|||+++.++|..+|++|++|+++++.-.
T Consensus       173 ~~~LD~~t~Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs  225 (428)
T PRK06749        173 YTSLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMS  225 (428)
T ss_pred             cHHHHHHhCCCCCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCC
Confidence            4456666543 223488999999999999999999999999999999999854

>PRK15453 phosphoribulokinase; Provisional

Probab=96.30  E-value=0.0073  Score=56.88  Aligned_cols=42  Identities=19%  Similarity=0.302  Sum_probs=36.5

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      ...|+.++|-.|+||||++..++..+...|.++.+++.|.-+
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh   45 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH   45 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence            345777889999999999999999998888889999999544

>PRK08727 hypothetical protein; Validated

Probab=96.30  E-value=0.0066  Score=55.83  Aligned_cols=41  Identities=22%  Similarity=0.396  Sum_probs=35.8

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +.....+++.|+.|+|||.++.+++..+.+.|++|..+.++
T Consensus        38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~   78 (233)
T PRK08727         38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ   78 (233)
T ss_pred             ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence            33445689999999999999999999999999999999864

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=96.27  E-value=0.0063  Score=56.87  Aligned_cols=40  Identities=23%  Similarity=0.322  Sum_probs=35.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      |+-++|-.|+||||++..++..+.+.|.+|.+|+.|.-+.
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            3567899999999999999999999999999999996544

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=96.25  E-value=0.0085  Score=57.43  Aligned_cols=38  Identities=24%  Similarity=0.243  Sum_probs=34.0

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .+-+++.|..|+|||.+++++|..++++|++|..+.+.
T Consensus       156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~  193 (306)
T PRK08939        156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP  193 (306)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence            34578889999999999999999999999999999773

>PRK05748 replicative DNA helicase; Provisional

Probab=96.24  E-value=0.0073  Score=61.00  Aligned_cols=52  Identities=17%  Similarity=0.202  Sum_probs=41.7

Q ss_pred             hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.+ ..-.+++++|.+|+|||+++.++|...| +.|++|+++++.-.
T Consensus       190 ~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms  243 (448)
T PRK05748        190 FTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMG  243 (448)
T ss_pred             hHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            4457777653 2224789999999999999999999988 56999999999854

>PRK08840 replicative DNA helicase; Provisional

Probab=96.24  E-value=0.0076  Score=61.09  Aligned_cols=53  Identities=21%  Similarity=0.179  Sum_probs=42.5

Q ss_pred             chhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873           15 PEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (365)
Q Consensus        15 ~~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~   67 (365)
                      -.++|+.++.+ ....++++.|.+|+|||+++.|+|...| ++|++|+++++.-.
T Consensus       203 G~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs  257 (464)
T PRK08840        203 GFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP  257 (464)
T ss_pred             CcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC
Confidence            34457777653 2335888999999999999999999998 56999999999943

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=96.23  E-value=0.0052  Score=59.57  Aligned_cols=35  Identities=31%  Similarity=0.312  Sum_probs=33.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTD   65 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D   65 (365)
                      .+++|-.|+||||++..++.+|. ..|.+|.++|.|
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~D   37 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYD   37 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccc
Confidence            57889999999999999999998 689999999999

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>COG4240 Predicted kinase [General function prediction only]

Probab=96.20  E-value=0.0079  Score=54.55  Aligned_cols=40  Identities=30%  Similarity=0.313  Sum_probs=36.9

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CCEEEEeCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVR-PSVLIISTD   65 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G-~rVLLiD~D   65 (365)
                      +.+.|+++||.-|+||||+|+.+-..|+..| +||+-++.|
T Consensus        48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLD   88 (300)
T COG4240          48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLD   88 (300)
T ss_pred             CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehh
Confidence            4467889999999999999999999999988 899999999

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=96.18  E-value=0.012  Score=54.84  Aligned_cols=59  Identities=25%  Similarity=0.227  Sum_probs=46.1

Q ss_pred             hhhhhhcchhhHHhhh---cCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCC--EEEEeCCC
Q 017873            8 QDQELEIPEGSVRNIL---EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPS--VLIISTDP   66 (365)
Q Consensus         8 ~~~~~~~~~~~l~~~~---~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~r--VLLiD~D~   66 (365)
                      +.++.+.+...+..++   ..+.+.|+..+|..||||||+|..++..+++.+.+  |-+|-+|-
T Consensus        59 ~~~~~~~~~~~~~~~l~~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDG  122 (283)
T COG1072          59 YVEARERLFAELLRFLGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDG  122 (283)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccc
Confidence            3444555555555554   35667789999999999999999999999988765  99999993

>PRK06321 replicative DNA helicase; Provisional

Probab=96.18  E-value=0.0085  Score=60.84  Aligned_cols=52  Identities=13%  Similarity=0.121  Sum_probs=42.0

Q ss_pred             hhhHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~   67 (365)
                      .++|+.++.+- .-.++++.|.+|+|||+++.++|..+| +.|++|+++++.-.
T Consensus       213 ~~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs  266 (472)
T PRK06321        213 FIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMT  266 (472)
T ss_pred             cHHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence            34577777632 224788999999999999999999998 56999999999853

>PRK09183 transposase/IS protein; Provisional

Probab=96.17  E-value=0.0072  Score=56.55  Aligned_cols=35  Identities=23%  Similarity=0.220  Sum_probs=31.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      .+++.|..|+|||+++.++|..+...|++|+.+++
T Consensus       104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~  138 (259)
T PRK09183        104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA  138 (259)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence            45577899999999999999998899999998874

>PRK09165 replicative DNA helicase; Provisional

Probab=96.16  E-value=0.0083  Score=61.38  Aligned_cols=52  Identities=15%  Similarity=0.188  Sum_probs=41.2

Q ss_pred             hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC---------------CCCEEEEeCCCC
Q 017873           16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV---------------RPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~---------------G~rVLLiD~D~~   67 (365)
                      .+.|+.++.+ ..-.+++++|.+|+||||++.++|...|..               |++|+++++.-.
T Consensus       204 ~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs  271 (497)
T PRK09165        204 LRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMS  271 (497)
T ss_pred             hHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCC
Confidence            4457777743 222478999999999999999999999853               789999999854

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.15  E-value=0.0065  Score=54.09  Aligned_cols=36  Identities=31%  Similarity=0.388  Sum_probs=32.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCC----EEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPS----VLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~r----VLLiD~D   65 (365)
                      |+.++|-+|+||||+|..|+..|...|..    +.++..|
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d   40 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLD   40 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGG
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeec
Confidence            57889999999999999999999988876    7777777

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd04165 GTPBP1_like GTPBP1-like

Probab=96.14  E-value=0.35  Score=44.11  Aligned_cols=38  Identities=8%  Similarity=0.027  Sum_probs=30.0

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|..++......+.+.+..+...|+|+ -+|+|+.
T Consensus       111 D~~llVvda~~g~~~~d~~~l~~l~~~~ip~-ivvvNK~  148 (224)
T cd04165         111 DYAMLVVAANAGIIGMTKEHLGLALALNIPV-FVVVTKI  148 (224)
T ss_pred             CEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEECc
Confidence            3556666665555678889999999999996 5889999

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01894 EngA1 EngA1 subfamily

Probab=96.12  E-value=0.057  Score=45.13  Aligned_cols=38  Identities=16%  Similarity=0.079  Sum_probs=25.4

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|..+..........+...++..+.|+ -+|+|+.
T Consensus        78 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~  115 (157)
T cd01894          78 DVILFVVDGREGLTPADEEIAKYLRKSKKPV-ILVVNKV  115 (157)
T ss_pred             CEEEEEEeccccCCccHHHHHHHHHhcCCCE-EEEEECc
Confidence            4667776664432233456777888888776 5889998

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.11  E-value=0.01  Score=54.07  Aligned_cols=39  Identities=10%  Similarity=0.154  Sum_probs=35.0

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ...+++.|..|+|||+++.+++..+...|.++..+++..
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~   80 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS   80 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence            456788999999999999999999988999999999864

>PRK06904 replicative DNA helicase; Validated

Probab=96.11  E-value=0.009  Score=60.70  Aligned_cols=52  Identities=19%  Similarity=0.160  Sum_probs=40.9

Q ss_pred             hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~   67 (365)
                      .+.|+.+..+ .+-.++++.|.+|+|||+++.|+|..+|. .|++|+++++.-.
T Consensus       208 ~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs  261 (472)
T PRK06904        208 FTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP  261 (472)
T ss_pred             hHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence            3356666542 22348899999999999999999999884 6999999999943

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=96.07  E-value=0.0079  Score=56.59  Aligned_cols=38  Identities=34%  Similarity=0.379  Sum_probs=29.6

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      |.+++++|-+|+||||+|..|+..+...+.+|.+|+.|
T Consensus         1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~   38 (270)
T PF08433_consen    1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD   38 (270)
T ss_dssp             E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH
T ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc
Confidence            45789999999999999999999999999999999954

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.03  E-value=0.0077  Score=51.79  Aligned_cols=34  Identities=35%  Similarity=0.340  Sum_probs=29.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ++++|.+||||||++.-+|-.|.+.|++|.=+=+
T Consensus         8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t   41 (179)
T COG1618           8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFIT   41 (179)
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence            5677999999999999999999999998874433

>TIGR00436 era GTP-binding protein Era

Probab=96.00  E-value=0.07  Score=50.03  Aligned_cols=37  Identities=11%  Similarity=0.074  Sum_probs=24.5

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|..+......+ ..+.+.+...+.|+. +|+|+.
T Consensus        81 Dvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~i-lV~NK~  117 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG-EFVLTKLQNLKRPVV-LTRNKL  117 (270)
T ss_pred             CEEEEEEECCCCCchH-HHHHHHHHhcCCCEE-EEEECe
Confidence            4566666554433223 667778888888874 889998

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=95.99  E-value=0.014  Score=51.23  Aligned_cols=39  Identities=21%  Similarity=0.121  Sum_probs=34.2

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .+.++.+.|..|+||||+...+...+..+|+||..|=.+
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~   43 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT   43 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence            456778889999999999999999999999999999654

>cd01884 EF_Tu EF-Tu subfamily

Probab=95.95  E-value=0.17  Score=45.21  Aligned_cols=39  Identities=8%  Similarity=-0.002  Sum_probs=30.1

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|..+..-....+++.+..+...|++..-+++|+.
T Consensus        90 D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~  128 (195)
T cd01884          90 DGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKA  128 (195)
T ss_pred             CEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            466777766655557788899999999987555789999

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=95.94  E-value=0.028  Score=49.06  Aligned_cols=35  Identities=26%  Similarity=0.292  Sum_probs=29.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      +++++|..|+|||++|..+|..   .|.+++.+++...
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~   35 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEA   35 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCc
Confidence            4678999999999999999865   6789999977644

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=95.94  E-value=0.011  Score=53.88  Aligned_cols=38  Identities=34%  Similarity=0.489  Sum_probs=32.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH--CCCCEEEEeCCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAE--VRPSVLIISTDPA   67 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~--~G~rVLLiD~D~~   67 (365)
                      |+-++|..|+||||++..|+..+..  .+.+|.+|..|--
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f   40 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF   40 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence            3567799999999999999999875  5678999999943

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK06893 DNA replication initiation factor; Validated

Probab=95.93  E-value=0.012  Score=53.91  Aligned_cols=38  Identities=13%  Similarity=0.153  Sum_probs=34.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ...+++.|+.|+|||+++.++|..+.+.|.+|..++++
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            34678889999999999999999999999999999885

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=95.92  E-value=0.01  Score=52.76  Aligned_cols=35  Identities=37%  Similarity=0.482  Sum_probs=30.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      |+.++|..|+||||++..++..+  .+.++.++++|.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~   35 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDS   35 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecc
Confidence            46788999999999999999988  567899999994

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK06835 DNA replication protein DnaC; Validated

Probab=95.91  E-value=0.0088  Score=57.88  Aligned_cols=37  Identities=27%  Similarity=0.308  Sum_probs=33.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .-+++.|..|+|||+++.++|..+...|++|+.++++
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~  220 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTAD  220 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence            5577889999999999999999999999999999874

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=95.87  E-value=0.02  Score=53.51  Aligned_cols=61  Identities=20%  Similarity=0.205  Sum_probs=43.8

Q ss_pred             hhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873           12 LEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (365)
Q Consensus        12 ~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~   77 (365)
                      ++.+...+...+..+ ..+ ++.|..|+|||++|.++|..   .|.++..+.+++.....+++|..
T Consensus         7 ~~~l~~~~l~~l~~g-~~v-LL~G~~GtGKT~lA~~la~~---lg~~~~~i~~~~~~~~~dllg~~   67 (262)
T TIGR02640         7 VKRVTSRALRYLKSG-YPV-HLRGPAGTGKTTLAMHVARK---RDRPVMLINGDAELTTSDLVGSY   67 (262)
T ss_pred             HHHHHHHHHHHHhcC-CeE-EEEcCCCCCHHHHHHHHHHH---hCCCEEEEeCCccCCHHHHhhhh
Confidence            444455555555443 333 45799999999999999974   48999999999876667777743

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=95.87  E-value=0.019  Score=54.58  Aligned_cols=42  Identities=31%  Similarity=0.352  Sum_probs=34.4

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEeCCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTDPA   67 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD~D~~   67 (365)
                      +.+.|+-++|..|+||||++..++..+.+.  +.+|.++..|.-
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f  103 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF  103 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence            455788899999999999999888888743  447999999953

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=95.87  E-value=0.0098  Score=53.44  Aligned_cols=45  Identities=24%  Similarity=0.422  Sum_probs=31.8

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHH--------HHCCCCEEEEeCC
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILL--------AEVRPSVLIISTD   65 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~l--------a~~G~rVLLiD~D   65 (365)
                      +...+.+..  +.+++|.+|+||||+.++++..+        ...+.++|++.-.
T Consensus        10 i~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~s   62 (236)
T PF13086_consen   10 IQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPS   62 (236)
T ss_dssp             HHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESS
T ss_pred             HHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCC
Confidence            444443332  78999999999999999999988        4667888887654

>PRK05636 replicative DNA helicase; Provisional

Probab=95.85  E-value=0.014  Score=59.79  Aligned_cols=52  Identities=15%  Similarity=0.181  Sum_probs=41.3

Q ss_pred             hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~   67 (365)
                      .++|+.+..+ ..-.+++++|.+|+|||+++.++|..+| +.|++|+++++.-.
T Consensus       252 ~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs  305 (505)
T PRK05636        252 FKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMS  305 (505)
T ss_pred             hHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCC
Confidence            3457776643 2335788999999999999999999888 56899999999854

>PRK08181 transposase; Validated

Probab=95.84  E-value=0.01  Score=55.83  Aligned_cols=35  Identities=26%  Similarity=0.275  Sum_probs=32.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      -+++.|..|+|||.++.++|..+.+.|++|+.+++
T Consensus       108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~  142 (269)
T PRK08181        108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT  142 (269)
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence            36788999999999999999999999999999976

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=95.81  E-value=0.021  Score=56.35  Aligned_cols=61  Identities=21%  Similarity=0.193  Sum_probs=46.7

Q ss_pred             hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CCEEEEeCCCCCC
Q 017873            9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVR--PSVLIISTDPAHN   69 (365)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G--~rVLLiD~D~~~~   69 (365)
                      +++++++...+...+.+.....++++|..|+|||+++..++..+...+  ..++-|++....+
T Consensus        36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~   98 (394)
T PRK00411         36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT   98 (394)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence            556777777777776554455678999999999999999999998764  6677777765444

>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []

Probab=95.78  E-value=0.057  Score=50.04  Aligned_cols=40  Identities=28%  Similarity=0.364  Sum_probs=31.6

Q ss_pred             EEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           29 KWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        29 ~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      .|++++| -.|.||=.+|++++.-|..+|++|.++=+||--
T Consensus         3 yIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYl   43 (276)
T PF06418_consen    3 YIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYL   43 (276)
T ss_dssp             EEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SS
T ss_pred             EEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeecccc
Confidence            4556666 799999999999999999999999999999753

The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=95.76  E-value=0.059  Score=51.06  Aligned_cols=50  Identities=18%  Similarity=0.108  Sum_probs=39.9

Q ss_pred             hhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        17 ~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ...+..+...+-.++-+.|..|+||||+...+...+... +++.+|..|..
T Consensus        93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~  142 (290)
T PRK10463         93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQ  142 (290)
T ss_pred             HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcC
Confidence            345666666667777788999999999999999988654 58999999964

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=95.76  E-value=0.026  Score=49.85  Aligned_cols=37  Identities=32%  Similarity=0.457  Sum_probs=32.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++++.|-.|+||||++..|+..+...|++|.++-..
T Consensus         4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~   40 (195)
T TIGR00041         4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREP   40 (195)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            5678889999999999999999999999988766543

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=95.74  E-value=0.015  Score=52.04  Aligned_cols=46  Identities=28%  Similarity=0.328  Sum_probs=35.6

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ++.++.+ +.++.++.|.+|+||||+...++..+...|++|+++..-
T Consensus        10 ~~~~l~~-~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT   55 (196)
T PF13604_consen   10 VRAILTS-GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT   55 (196)
T ss_dssp             HHHHHHC-TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred             HHHHHhc-CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence            4445544 356778889999999999999999999999999998754

>PRK07004 replicative DNA helicase; Provisional

Probab=95.72  E-value=0.014  Score=59.10  Aligned_cols=51  Identities=20%  Similarity=0.243  Sum_probs=40.7

Q ss_pred             hhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873           17 GSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (365)
Q Consensus        17 ~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~   67 (365)
                      +.|+.+..+ ..-.+++++|.+|+|||+++.++|..+| +.|++|+++++.-.
T Consensus       201 ~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~  253 (460)
T PRK07004        201 VDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMP  253 (460)
T ss_pred             HHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            346666542 2234789999999999999999999988 57999999999954

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=95.70  E-value=0.029  Score=61.24  Aligned_cols=47  Identities=21%  Similarity=0.277  Sum_probs=37.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC---CCChhhHhh
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP---AHNLSDAFQ   75 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~---~~~l~~~~~   75 (365)
                      ..+++.|..|||||++|..+|..+...+.+++.+|+..   .++.+.++|
T Consensus       596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g  645 (852)
T TIGR03346       596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIG  645 (852)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcC
Confidence            45667899999999999999999988888999999873   234444444

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PF05729 NACHT: NACHT domain

Probab=95.69  E-value=0.011  Score=50.13  Aligned_cols=28  Identities=32%  Similarity=0.463  Sum_probs=25.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVR   56 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G   56 (365)
                      +++++.|.+|+||||++..++..++..+
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~   28 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEE   28 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcC
Confidence            4688999999999999999999999765

>cd00881 GTP_translation_factor GTP translation factor family

Probab=95.66  E-value=0.072  Score=46.07  Aligned_cols=38  Identities=11%  Similarity=-0.033  Sum_probs=26.5

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|..............+..+...+.++ -+|+|+.
T Consensus        87 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i-~iv~nK~  124 (189)
T cd00881          87 DGAILVVDANEGVQPQTREHLRIAREGGLPI-IVAINKI  124 (189)
T ss_pred             CEEEEEEECCCCCcHHHHHHHHHHHHCCCCe-EEEEECC
Confidence            4667777765544455666777777777776 4889998

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK05642 DNA replication initiation factor; Validated

Probab=95.65  E-value=0.014  Score=53.64  Aligned_cols=37  Identities=14%  Similarity=0.312  Sum_probs=33.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..+++.|+.|+|||.++.+++..+...|++|+.++++
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~   82 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA   82 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence            4678899999999999999999998889999999986

>PRK06547 hypothetical protein; Provisional

Probab=95.60  E-value=0.018  Score=50.48  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=28.1

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ...+.++.++|..|+||||+|..||..+   |  +.++++|
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~---~--~~~~~~d   47 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAART---G--FQLVHLD   47 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHh---C--CCeeccc
Confidence            4556677888999999999999998863   3  4566776

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=95.57  E-value=0.03  Score=49.16  Aligned_cols=36  Identities=25%  Similarity=0.340  Sum_probs=31.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ++++.|--|+||||++..|+..+...|++|..+...
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~   37 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP   37 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            567789999999999999999999999999776654

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.56  E-value=0.098  Score=50.00  Aligned_cols=51  Identities=20%  Similarity=0.201  Sum_probs=41.6

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHH----CCCCEEEEeCCCCCChhhHhhcc
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAE----VRPSVLIISTDPAHNLSDAFQQR   77 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~----~G~rVLLiD~D~~~~l~~~~~~~   77 (365)
                      ..+++..-|.+|+|||+++-+||+.|+-    +-++..+|..+...=.+.||+-.
T Consensus       176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsES  230 (423)
T KOG0744|consen  176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSES  230 (423)
T ss_pred             eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhh
Confidence            3467888999999999999999999982    33688899998766677888743

>PRK10865 protein disaggregation chaperone; Provisional

Probab=95.54  E-value=0.04  Score=60.11  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=30.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..+++.|..|||||++|..+|..+-..+...+-+|+.
T Consensus       599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~s  635 (857)
T PRK10865        599 GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMS  635 (857)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhH
Confidence            3567789999999999999999887667777778775

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=95.52  E-value=0.014  Score=54.77  Aligned_cols=47  Identities=26%  Similarity=0.316  Sum_probs=34.5

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCC-C-CEEEEeCCCCCChhh
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVR-P-SVLIISTDPAHNLSD   72 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G-~-rVLLiD~D~~~~l~~   72 (365)
                      .+.+++.+.|-||+||||+|..++......+ + .++-+++....+...
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~   65 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQ   65 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHH
T ss_pred             CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccc
Confidence            5678899999999999999999998755332 3 466677776555443

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PF12846 AAA_10: AAA-like domain

Probab=95.52  E-value=0.026  Score=52.91  Aligned_cols=40  Identities=38%  Similarity=0.447  Sum_probs=34.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhh
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD   72 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~   72 (365)
                      +++.|+.|+||||+..++...+...|.+++++  |+.++...
T Consensus         4 ~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~--D~~g~~~~   43 (304)
T PF12846_consen    4 TLILGKTGSGKTTLLKNLLEQLIRRGPRVVIF--DPKGDYSP   43 (304)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHcCCCEEEE--cCCchHHH
Confidence            46779999999999999999999999999999  44455544

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=95.51  E-value=0.029  Score=61.09  Aligned_cols=48  Identities=29%  Similarity=0.333  Sum_probs=35.3

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC---CCChhhHhh
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP---AHNLSDAFQ   75 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~---~~~l~~~~~   75 (365)
                      .-++++.|..|||||.+|.+||..+-..+.++..+|+..   .++.+.++|
T Consensus       596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g  646 (852)
T TIGR03345       596 LGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKG  646 (852)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccC
Confidence            346788899999999999999999865556777777542   344444444

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=95.51  E-value=0.13  Score=48.32  Aligned_cols=37  Identities=14%  Similarity=0.108  Sum_probs=29.3

Q ss_pred             EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      .+++|.....-....+.+++..+...++|+. +++|+.
T Consensus        90 ~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~  126 (270)
T cd01886          90 GAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKM  126 (270)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECC
Confidence            5666666655555677899999999999985 899999

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=95.45  E-value=0.029  Score=53.36  Aligned_cols=44  Identities=30%  Similarity=0.388  Sum_probs=32.6

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ++.+...+.+.+++++|..|+||||+|..||..+   |.. .+|.+|.
T Consensus        83 ~~~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l---~~~-~vi~~D~  126 (301)
T PRK04220         83 WRRIRKSKEPIIILIGGASGVGTSTIAFELASRL---GIR-SVIGTDS  126 (301)
T ss_pred             HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHh---CCC-EEEechH
Confidence            3333333445678899999999999999999887   554 4677883

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=95.44  E-value=0.01  Score=49.52  Aligned_cols=32  Identities=31%  Similarity=0.470  Sum_probs=26.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ++++.|.+|+||||++..++..+.     ..+||.|.
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~   32 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDE   32 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHH
Confidence            578899999999999998876543     67788884

...

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=95.44  E-value=0.015  Score=49.19  Aligned_cols=33  Identities=30%  Similarity=0.344  Sum_probs=26.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      |++++|..|+||||+|..++..+   |  ..++|.|.-
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~---~--~~~i~~D~~   33 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERL---G--APFIDGDDL   33 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhc---C--CEEEeCccc
Confidence            46888999999999999998874   3  356788854

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK00131 aroK shikimate kinase; Reviewed

Probab=95.44  E-value=0.016  Score=49.85  Aligned_cols=33  Identities=30%  Similarity=0.239  Sum_probs=26.8

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ...+++.|.+|+||||+|..||..+   |.  .++|.|
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~~l---~~--~~~d~d   36 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAKRL---GY--DFIDTD   36 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHh---CC--CEEECh
Confidence            3477888999999999999999987   43  455776

>PRK08116 hypothetical protein; Validated

Probab=95.41  E-value=0.022  Score=53.61  Aligned_cols=36  Identities=22%  Similarity=0.241  Sum_probs=32.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      .-+++.|..|+|||.++.++|..+.++|++|+.+++
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~  150 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF  150 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence            357888999999999999999999988999999985

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=95.41  E-value=0.02  Score=56.96  Aligned_cols=37  Identities=22%  Similarity=0.084  Sum_probs=31.1

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      |+|+-+.|+.|+||||+...|...|..+|+||.+|=-
T Consensus         1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH   37 (452)
T PRK14495          1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKH   37 (452)
T ss_pred             CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence            3466556667999999999999999999999999643

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.40  E-value=0.031  Score=46.57  Aligned_cols=44  Identities=30%  Similarity=0.346  Sum_probs=37.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~   77 (365)
                      ++..|..|+|||+++-.+|..+   +.++..+.+...-+..+++|.-
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~~dl~g~~   45 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTEEDLIGSY   45 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTHHHHHCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---hcceEEEEeccccccccceeee
Confidence            4667899999999999999998   8899999999888888888754

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK15494 era GTPase Era; Provisional

Probab=95.39  E-value=0.15  Score=49.58  Aligned_cols=19  Identities=26%  Similarity=0.317  Sum_probs=15.3

Q ss_pred             EEEeCCCCCcHHHHHHHHH
Q 017873           31 VFVGGKGGVGKTTCSSILS   49 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA   49 (365)
                      +.+-|.+||||||+.-.+.
T Consensus        55 V~ivG~~nvGKSTLin~l~   73 (339)
T PRK15494         55 VCIIGRPNSGKSTLLNRII   73 (339)
T ss_pred             EEEEcCCCCCHHHHHHHHh
Confidence            4555899999999987763

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=95.38  E-value=0.016  Score=51.80  Aligned_cols=41  Identities=22%  Similarity=0.385  Sum_probs=29.5

Q ss_pred             cCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           24 EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        24 ~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .+..++++++.|-+|+||||++..+...+.  +...+.||.|.
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~   51 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADE   51 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGG
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHH
Confidence            345678899999999999999999877766  66689999994

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>cd04167 Snu114p Snu114p subfamily

Probab=95.37  E-value=0.049  Score=49.08  Aligned_cols=24  Identities=25%  Similarity=0.221  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHH
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAE   54 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~   54 (365)
                      +.+.|..|+||||++-+|......
T Consensus         3 v~iiG~~~~GKTtL~~~l~~~~~~   26 (213)
T cd04167           3 VAIAGHLHHGKTSLLDMLIEQTHD   26 (213)
T ss_pred             EEEEcCCCCCHHHHHHHHHHhcCC
Confidence            455699999999999999876543

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK06921 hypothetical protein; Provisional

Probab=95.36  E-value=0.022  Score=53.54  Aligned_cols=37  Identities=22%  Similarity=0.134  Sum_probs=32.6

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIST   64 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~   64 (365)
                      ..-+++.|..|+|||.++.++|..+.++ |++|+.+++
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~  154 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF  154 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence            3456778999999999999999999987 999999885

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=95.34  E-value=0.027  Score=55.37  Aligned_cols=40  Identities=25%  Similarity=0.114  Sum_probs=35.4

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .++++-+.|..|+||||+...+...|.++|++|.+|=-|.
T Consensus       204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~  243 (366)
T PRK14489        204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSH  243 (366)
T ss_pred             CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence            3567777889999999999999999999999999998663

>PRK06217 hypothetical protein; Validated

Probab=95.27  E-value=0.025  Score=49.76  Aligned_cols=32  Identities=28%  Similarity=0.346  Sum_probs=25.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .+++.|-+|+||||+|..||..+   |.  -.+|+|.
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l---~~--~~~~~D~   34 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERL---DI--PHLDTDD   34 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc---CC--cEEEcCc
Confidence            36777899999999999999866   44  3688883

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=95.24  E-value=0.042  Score=53.58  Aligned_cols=61  Identities=25%  Similarity=0.318  Sum_probs=44.6

Q ss_pred             hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCC------CCEEEEeCCCCCC
Q 017873            9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVR------PSVLIISTDPAHN   69 (365)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G------~rVLLiD~D~~~~   69 (365)
                      +++++.+...|...+.+.....++++|.+|+|||+++..++..+....      ..++.|++....+
T Consensus        21 e~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~   87 (365)
T TIGR02928        21 DEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT   87 (365)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC
Confidence            456777777777766655556788999999999999999999886432      3466677654333

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated

Probab=95.23  E-value=0.24  Score=43.52  Aligned_cols=47  Identities=17%  Similarity=0.069  Sum_probs=34.7

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      |-.....+++..++++  .|=||||.|..+|...+-+|+||++|=+=-.
T Consensus        14 ~~~~~~~~Gli~VYtG--dGKGKTTAAlGlalRAaG~G~rV~iiQFlKg   60 (178)
T PRK07414         14 LPLPYTIEGLVQVFTS--SQRNFFTSVMAQALRIAGQGTPVLIVQFLKG   60 (178)
T ss_pred             cccCCCCCCEEEEEeC--CCCCchHHHHHHHHHHhcCCCEEEEEEEecC
Confidence            3333444555555543  4579999999999999999999999988543

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=95.19  E-value=0.081  Score=49.60  Aligned_cols=44  Identities=25%  Similarity=0.325  Sum_probs=33.7

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      |..++.. ...+++++|..|+||||+..++...+...+.+++.|+
T Consensus        72 l~~~~~~-~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiE  115 (264)
T cd01129          72 FRKLLEK-PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVE  115 (264)
T ss_pred             HHHHHhc-CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC
Confidence            4455543 3457889999999999999998888776677777775

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=95.17  E-value=0.029  Score=48.51  Aligned_cols=40  Identities=23%  Similarity=0.095  Sum_probs=34.2

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ++|+=+.|.-|+||||+...+...|..+|+||.+|=-...
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh   41 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH   41 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence            5666666788899999999999999999999999976543

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=95.15  E-value=0.077  Score=56.98  Aligned_cols=43  Identities=23%  Similarity=0.242  Sum_probs=32.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC---CCChhhHhh
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP---AHNLSDAFQ   75 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~---~~~l~~~~~   75 (365)
                      .+++.|..|||||++|..+|..+   +.++.-+|+..   .++.+.++|
T Consensus       486 ~~lf~Gp~GvGKT~lA~~la~~l---~~~~~~~d~se~~~~~~~~~lig  531 (731)
T TIGR02639       486 SFLFTGPTGVGKTELAKQLAEAL---GVHLERFDMSEYMEKHTVSRLIG  531 (731)
T ss_pred             eEEEECCCCccHHHHHHHHHHHh---cCCeEEEeCchhhhcccHHHHhc
Confidence            46788999999999999999987   56788888753   244455544

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=95.14  E-value=0.12  Score=41.42  Aligned_cols=36  Identities=11%  Similarity=0.147  Sum_probs=23.3

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcC
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQ  262 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~  262 (365)
                      ..+++|...+.........++++|+ .+.|+. +|+|+
T Consensus        81 d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i-~v~NK  116 (116)
T PF01926_consen   81 DLIIYVVDASNPITEDDKNILRELK-NKKPII-LVLNK  116 (116)
T ss_dssp             SEEEEEEETTSHSHHHHHHHHHHHH-TTSEEE-EEEES
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHh-cCCCEE-EEEcC
Confidence            4677777776632345667778886 666654 77775

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]

Probab=95.12  E-value=0.46  Score=51.68  Aligned_cols=29  Identities=41%  Similarity=0.532  Sum_probs=26.8

Q ss_pred             CCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           35 GKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        35 gKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      ...|+||||+-...|.++|.+|+|+++|=
T Consensus       104 APTGvGKTTfg~~~sl~~a~kgkr~yii~  132 (1187)
T COG1110         104 APTGVGKTTFGLLMSLYLAKKGKRVYIIV  132 (1187)
T ss_pred             cCCCCchhHHHHHHHHHHHhcCCeEEEEe
Confidence            67899999999999999999999999874

>cd04168 TetM_like Tet(M)-like subfamily

Probab=95.10  E-value=0.3  Score=45.01  Aligned_cols=37  Identities=24%  Similarity=0.149  Sum_probs=28.1

Q ss_pred             EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      .+++|.....-....++.+++.++..++|+. +++|+.
T Consensus        90 ~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~i-ivvNK~  126 (237)
T cd04168          90 GAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNKI  126 (237)
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECc
Confidence            5566665544444678889999999999975 899999

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PF13173 AAA_14: AAA domain

Probab=95.07  E-value=0.032  Score=46.07  Aligned_cols=39  Identities=33%  Similarity=0.354  Sum_probs=33.2

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+++++.|.-||||||++..++..+- ...+++.+|+|..
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~   40 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDP   40 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCH
Confidence            46788889999999999999998877 5678999999843

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.06  E-value=0.02  Score=46.50  Aligned_cols=22  Identities=36%  Similarity=0.400  Sum_probs=20.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHH
Q 017873           31 VFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      ++++|..|+||||+|..|+..+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999998

...

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=95.02  E-value=0.038  Score=54.84  Aligned_cols=40  Identities=23%  Similarity=0.145  Sum_probs=35.3

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ...|+-++|-.|+||||++..+...+...|.+|..|..|-
T Consensus       211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDD  250 (460)
T PLN03046        211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDD  250 (460)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECC
Confidence            4567889999999999999999888877789999999984

>cd03112 CobW_like The function of this protein family is unkown

Probab=95.02  E-value=0.25  Score=42.44  Aligned_cols=35  Identities=20%  Similarity=0.169  Sum_probs=28.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      +++++|--|+||||+...+...  ..|.++.++-.|.
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~--~~~~~~~~i~~~~   36 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTE--QHGRKIAVIENEF   36 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc--ccCCcEEEEecCC
Confidence            5678899999999999988765  3588888887774

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=95.01  E-value=0.025  Score=50.68  Aligned_cols=34  Identities=32%  Similarity=0.471  Sum_probs=27.8

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..+++++|.+|+||||+|..||..+   |..+ ++..|
T Consensus         3 ~~~i~i~G~~G~GKst~a~~l~~~~---~~~~-~~~~D   36 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIARHR---AIDI-VLSGD   36 (197)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc---CCeE-EehhH
Confidence            4588999999999999999999874   5543 67777

>PLN02796 D-glycerate 3-kinase

Probab=95.00  E-value=0.036  Score=53.73  Aligned_cols=40  Identities=23%  Similarity=0.172  Sum_probs=34.9

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .+.|+.++|..|+||||++..++..+...|.++..|..|-
T Consensus        99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd  138 (347)
T PLN02796         99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD  138 (347)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence            4567788899999999999999999987788899998883

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=94.98  E-value=0.022  Score=49.07  Aligned_cols=24  Identities=33%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      ++.+||++|+||||+|.-||..+.
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~g   25 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLG   25 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhC
Confidence            567899999999999999988753

>CHL00095 clpC Clp protease ATP binding subunit

Probab=94.98  E-value=0.062  Score=58.47  Aligned_cols=36  Identities=19%  Similarity=0.306  Sum_probs=29.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..++.|..|||||++|..||..+-..+.+++-+|+.
T Consensus       541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s  576 (821)
T CHL00095        541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMS  576 (821)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEch
Confidence            457799999999999999999886555667777765

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.92  E-value=0.5  Score=49.70  Aligned_cols=36  Identities=39%  Similarity=0.434  Sum_probs=27.2

Q ss_pred             hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      .|.+.+.++ -....+++|..|+||||++..+|..|-
T Consensus        27 ~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn   63 (700)
T PRK12323         27 ALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN   63 (700)
T ss_pred             HHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            455555543 334567889999999999999999885

>PRK05380 pyrG CTP synthetase; Validated

Probab=94.91  E-value=0.16  Score=51.98  Aligned_cols=39  Identities=28%  Similarity=0.308  Sum_probs=34.0

Q ss_pred             EEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           29 KWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .|.+++| -.|.||=.+|++++..|..+|++|.++=+||-
T Consensus         4 ~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpY   43 (533)
T PRK05380          4 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPY   43 (533)
T ss_pred             EEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccc
Confidence            3445555 79999999999999999999999999999974

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=94.86  E-value=0.076  Score=57.03  Aligned_cols=65  Identities=22%  Similarity=0.274  Sum_probs=42.1

Q ss_pred             hhhhhcchhhHHhhhc-----CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC---CCChhhHhhc
Q 017873            9 DQELEIPEGSVRNILE-----QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP---AHNLSDAFQQ   76 (365)
Q Consensus         9 ~~~~~~~~~~l~~~~~-----~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~---~~~l~~~~~~   76 (365)
                      +++++.+...+.....     +++...+++.|..|||||++|..+|..+   +.+.+-+|+..   .++.+.++|.
T Consensus       464 ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l---~~~~i~id~se~~~~~~~~~LiG~  536 (758)
T PRK11034        464 DKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGA  536 (758)
T ss_pred             HHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh---CCCcEEeechhhcccccHHHHcCC
Confidence            3444445554443321     2233356888999999999999999887   56777777753   2456666664

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=94.82  E-value=0.21  Score=50.12  Aligned_cols=38  Identities=29%  Similarity=0.335  Sum_probs=33.4

Q ss_pred             EEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           30 WVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        30 i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      |++++| -.|.||-.+|+++|.-|..+|++|-++=+||-
T Consensus         4 IfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPY   42 (533)
T COG0504           4 IFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPY   42 (533)
T ss_pred             EEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccc
Confidence            445555 78999999999999999999999999999974

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=94.80  E-value=0.049  Score=57.49  Aligned_cols=41  Identities=20%  Similarity=0.310  Sum_probs=37.0

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ....++++.|..|+||||+|..|+..|...|..+.++|.|.
T Consensus       458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~  498 (632)
T PRK05506        458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN  498 (632)
T ss_pred             CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh
Confidence            34678889999999999999999999988899999999995

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=94.74  E-value=0.03  Score=49.75  Aligned_cols=32  Identities=31%  Similarity=0.421  Sum_probs=26.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      |+.++|..|+||||+|..|+..+.    .+.+|+.|
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~D   32 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQD   32 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC----CCeEEccc
Confidence            467789999999999999998862    47888888

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PLN02327 CTP synthase

Probab=94.72  E-value=0.28  Score=50.30  Aligned_cols=39  Identities=31%  Similarity=0.441  Sum_probs=34.0

Q ss_pred             EEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           29 KWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .|++++| -.|.||=.+|++++..|..+|++|..+=+||-
T Consensus         3 ~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPY   42 (557)
T PLN02327          3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPY   42 (557)
T ss_pred             EEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccc
Confidence            3445555 79999999999999999999999999999974

>TIGR00235 udk uridine kinase

Probab=94.68  E-value=0.049  Score=48.91  Aligned_cols=37  Identities=32%  Similarity=0.393  Sum_probs=29.8

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      -.++.++|.+|+||||++..++..+..  ..+.++..|.
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~   42 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDN   42 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEecccc
Confidence            457788899999999999999987653  4577787774

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown

Probab=94.67  E-value=0.057  Score=49.14  Aligned_cols=37  Identities=22%  Similarity=0.297  Sum_probs=32.2

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D   65 (365)
                      +.++++ |+.|+|||+++..+...+. +.|.+++++|..
T Consensus        24 ~H~~I~-G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~   61 (229)
T PF01935_consen   24 RHIAIF-GTTGSGKSNTVKVLLEELLKKKGAKVIIFDPH   61 (229)
T ss_pred             ceEEEE-CCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence            355555 7899999999999999999 889999999886

It contains several conserved aspartates and histidines that could be metal ligands.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=94.67  E-value=0.038  Score=48.19  Aligned_cols=30  Identities=33%  Similarity=0.328  Sum_probs=25.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEE
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVL   60 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVL   60 (365)
                      +|++|+.|+||||+...+...+...|.+|.
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~   31 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEELKKKGLPVG   31 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHHHHTCGGEE
T ss_pred             EEEECcCCCCHHHHHHHHHHHhhccCCccc
Confidence            578899999999999999999987776654

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK12740 elongation factor G; Reviewed

Probab=94.67  E-value=0.17  Score=53.75  Aligned_cols=38  Identities=18%  Similarity=0.137  Sum_probs=29.0

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|..+.......+...+..+...++|+. +|+|+.
T Consensus        85 D~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~  122 (668)
T PRK12740         85 DGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKM  122 (668)
T ss_pred             CeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECC
Confidence            46677777766556677788888888898875 788998

>PRK07773 replicative DNA helicase; Validated

Probab=94.67  E-value=0.043  Score=60.16  Aligned_cols=52  Identities=19%  Similarity=0.141  Sum_probs=40.9

Q ss_pred             hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.+ ..-.+++++|.+|+|||+++.++|...|. .|++|++++++-.
T Consensus       204 ~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms  257 (886)
T PRK07773        204 FTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMS  257 (886)
T ss_pred             hhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence            3456666632 12247899999999999999999999985 5899999999844

>PRK06851 hypothetical protein; Provisional

Probab=94.65  E-value=0.088  Score=51.62  Aligned_cols=41  Identities=20%  Similarity=0.174  Sum_probs=36.4

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ...++.+++|..|+||||+...++..+.++|++|.+.=|-.
T Consensus       212 ~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~  252 (367)
T PRK06851        212 GVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGF  252 (367)
T ss_pred             ccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            45678899999999999999999999999999999887643

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=94.64  E-value=0.049  Score=44.35  Aligned_cols=32  Identities=28%  Similarity=0.385  Sum_probs=26.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++.|..|+||||++..+|..+   |..++-+|+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~   32 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGS   32 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc---cccccccccc
Confidence            4678999999999999999986   5666666664

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=94.61  E-value=0.034  Score=52.77  Aligned_cols=35  Identities=20%  Similarity=0.291  Sum_probs=29.0

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ++++++.|.+|+||||+|..++..+.    ....+|.|.
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~   36 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDD   36 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccH
Confidence            57889999999999999999988762    467888874

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.60  E-value=0.48  Score=48.73  Aligned_cols=36  Identities=39%  Similarity=0.459  Sum_probs=26.8

Q ss_pred             hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      .|.+.+.++ -..-.+++|..|+||||+|..+|..+-
T Consensus        27 ~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~   63 (509)
T PRK14958         27 ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN   63 (509)
T ss_pred             HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence            455555443 233457889999999999999999885

>TIGR00337 PyrG CTP synthase

Probab=94.57  E-value=0.34  Score=49.54  Aligned_cols=39  Identities=28%  Similarity=0.354  Sum_probs=34.1

Q ss_pred             EEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           29 KWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .|.+++| -.|.||=.+|++++..|..+|++|..+=+||-
T Consensus         3 ~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpY   42 (525)
T TIGR00337         3 YIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPY   42 (525)
T ss_pred             EEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccc
Confidence            3445555 79999999999999999999999999999974

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=94.50  E-value=0.054  Score=56.31  Aligned_cols=37  Identities=32%  Similarity=0.417  Sum_probs=33.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D   65 (365)
                      .++++.|-.|+||||++..||..|.. .|.++.++|.|
T Consensus       393 ~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D  430 (568)
T PRK05537        393 FTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD  430 (568)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc
Confidence            46777899999999999999999986 78889999999

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=94.48  E-value=0.28  Score=44.87  Aligned_cols=52  Identities=23%  Similarity=0.261  Sum_probs=37.7

Q ss_pred             hcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHH-----CCCCEEEEeCC
Q 017873           13 EIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAE-----VRPSVLIISTD   65 (365)
Q Consensus        13 ~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~-----~G~rVLLiD~D   65 (365)
                      .+..+.++.+-.++...+++ -|.+|+||||+-..+|..+|-     .++||.+||.-
T Consensus       123 Gt~~~li~~ly~~g~lntLi-igpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer  179 (308)
T COG3854         123 GTANPLIKDLYQNGWLNTLI-IGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER  179 (308)
T ss_pred             ccchHHHHHHHhcCceeeEE-ecCCCCChHHHHHHHHHHhhccccccCCceEEEEecc
Confidence            34445455555555444444 479999999999999999883     57899999974

>smart00763 AAA_PrkA PrkA AAA domain

Probab=94.46  E-value=0.05  Score=53.06  Aligned_cols=47  Identities=17%  Similarity=0.215  Sum_probs=36.2

Q ss_pred             hhhhhhcchhhHHhhhc--CCCeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873            8 QDQELEIPEGSVRNILE--QDSLKWVFVGGKGGVGKTTCSSILSILLAE   54 (365)
Q Consensus         8 ~~~~~~~~~~~l~~~~~--~~~~~i~~~sgKGGvGKTT~aa~lA~~la~   54 (365)
                      +++.++++..-++....  ...++++.+.|..|+||||+|.+||..+..
T Consensus        56 ~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       56 MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            34556666666665554  335688999999999999999999999975

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK10490 sensor protein KdpD; Provisional

Probab=94.44  E-value=1.8  Score=47.82  Aligned_cols=42  Identities=26%  Similarity=0.245  Sum_probs=35.6

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEE--EEeCCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVL--IISTDPA   67 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVL--LiD~D~~   67 (365)
                      +|+--+|++.-+|||||+-..+-|..+.++|..|+  +++.--+
T Consensus        22 ~g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h~r   65 (895)
T PRK10490         22 RGKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETHGR   65 (895)
T ss_pred             CCcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCCCC
Confidence            56777899999999999999999999999999995  5555433

>cd04169 RF3 RF3 subfamily

Probab=94.42  E-value=0.91  Score=42.60  Aligned_cols=38  Identities=18%  Similarity=0.009  Sum_probs=27.4

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|..+..-....++++++.+...++|+ -+++|+.
T Consensus        96 D~~IlVvda~~g~~~~~~~i~~~~~~~~~P~-iivvNK~  133 (267)
T cd04169          96 DSAVMVIDAAKGVEPQTRKLFEVCRLRGIPI-ITFINKL  133 (267)
T ss_pred             CEEEEEEECCCCccHHHHHHHHHHHhcCCCE-EEEEECC
Confidence            3566676664433456678888888889986 4789999

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.41  E-value=0.57  Score=48.48  Aligned_cols=35  Identities=31%  Similarity=0.377  Sum_probs=26.4

Q ss_pred             HHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        19 l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      |.+.+.. +.....+++|..|+||||+|..+|..+-
T Consensus        28 L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~   63 (546)
T PRK14957         28 LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN   63 (546)
T ss_pred             HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4555544 2334567889999999999999999875

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=94.35  E-value=0.95  Score=43.40  Aligned_cols=20  Identities=40%  Similarity=0.650  Sum_probs=15.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSIL   48 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~l   48 (365)
                      ..+++-||+||||||+.-.+
T Consensus        39 ~rIllvGktGVGKSSliNsI   58 (313)
T TIGR00991        39 LTILVMGKGGVGKSSTVNSI   58 (313)
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            34566699999999987665

>PRK00093 GTP-binding protein Der; Reviewed

Probab=94.34  E-value=0.23  Score=49.77  Aligned_cols=20  Identities=35%  Similarity=0.421  Sum_probs=16.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILS   49 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA   49 (365)
                      +|+++ |++||||||+...+.
T Consensus         3 ~I~iv-G~~~vGKStL~n~l~   22 (435)
T PRK00093          3 VVAIV-GRPNVGKSTLFNRLT   22 (435)
T ss_pred             EEEEE-CCCCCCHHHHHHHHh
Confidence            44454 999999999988874

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=94.32  E-value=0.064  Score=57.12  Aligned_cols=49  Identities=24%  Similarity=0.241  Sum_probs=36.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC-----CCCChhhHhhccc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD-----PAHNLSDAFQQRF   78 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D-----~~~~l~~~~~~~~   78 (365)
                      .-..++.|..|||||-+|-+||..|=  |-.--+|-+|     ..|+.+.+.|.+.
T Consensus       521 igsFlF~GPTGVGKTELAkaLA~~Lf--g~e~aliR~DMSEy~EkHsVSrLIGaPP  574 (786)
T COG0542         521 IGSFLFLGPTGVGKTELAKALAEALF--GDEQALIRIDMSEYMEKHSVSRLIGAPP  574 (786)
T ss_pred             ceEEEeeCCCcccHHHHHHHHHHHhc--CCCccceeechHHHHHHHHHHHHhCCCC
Confidence            34668899999999999999999874  4444556666     4588888888653

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=94.31  E-value=0.078  Score=56.85  Aligned_cols=38  Identities=18%  Similarity=0.187  Sum_probs=29.3

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|..+..-...++.+++..+...++++. +++|++
T Consensus       111 D~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKi  148 (720)
T TIGR00490       111 DGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKV  148 (720)
T ss_pred             CEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEECh
Confidence            46677776655455677888888888899886 999999

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]

Probab=94.27  E-value=0.086  Score=52.66  Aligned_cols=52  Identities=21%  Similarity=0.217  Sum_probs=41.5

Q ss_pred             chhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCC
Q 017873           15 PEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDP   66 (365)
Q Consensus        15 ~~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~   66 (365)
                      =.++|+.+..+ +...++++.+.+|.|||++|.|+|..+|. .++.|+++++.-
T Consensus       182 gf~~LD~~t~G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM  235 (435)
T COG0305         182 GFTDLDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEM  235 (435)
T ss_pred             CchhhHHHhcCCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence            34567777764 23357889999999999999999999995 567799999884

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.25  E-value=0.84  Score=46.63  Aligned_cols=36  Identities=36%  Similarity=0.609  Sum_probs=26.1

Q ss_pred             hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      .|.+.+..+ -..-.+++|..|+||||+|..+|.++-
T Consensus        24 ~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln   60 (491)
T PRK14964         24 ILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLN   60 (491)
T ss_pred             HHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHc
Confidence            444544432 233567889999999999999998874

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=94.24  E-value=0.051  Score=50.09  Aligned_cols=36  Identities=36%  Similarity=0.467  Sum_probs=29.1

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ....|++.+|-.||||||+|.-+|..|   |- .-+|.+|
T Consensus        87 ~~p~IILIGGasGVGkStIA~ElA~rL---gI-~~visTD  122 (299)
T COG2074          87 KRPLIILIGGASGVGKSTIAGELARRL---GI-RSVISTD  122 (299)
T ss_pred             CCCeEEEecCCCCCChhHHHHHHHHHc---CC-ceeecch
Confidence            345788999999999999999998865   44 3567887

>PRK07933 thymidylate kinase; Validated

Probab=94.24  E-value=0.071  Score=48.32  Aligned_cols=36  Identities=25%  Similarity=0.301  Sum_probs=32.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ++++-|--|+||||.+..|+.+|...|++|.++..-
T Consensus         2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P   37 (213)
T PRK07933          2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFP   37 (213)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            567889999999999999999999999999988763

>PRK06761 hypothetical protein; Provisional

Probab=94.20  E-value=0.049  Score=51.50  Aligned_cols=39  Identities=23%  Similarity=0.382  Sum_probs=32.8

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEE-EeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLI-ISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLL-iD~D~   66 (365)
                      .++++++|..|+||||++..++..+...|.+|-. .+.|+
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~   42 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNL   42 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCC
Confidence            3578999999999999999999999888888875 45554

>PTZ00301 uridine kinase; Provisional

Probab=94.15  E-value=0.099  Score=47.32  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=29.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH-CCC-CEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAE-VRP-SVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~-~G~-rVLLiD~D   65 (365)
                      .|+-++|-+|+||||+|..++..+.. .|- .|.++..|
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D   42 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICED   42 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCC
Confidence            57788999999999999999988753 343 46688887

>PRK13946 shikimate kinase; Provisional

Probab=94.14  E-value=0.058  Score=47.53  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=27.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ++.+++.|-.|+||||++..||..|   |.+  .+|.|
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~L---g~~--~id~D   42 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATML---GLP--FLDAD   42 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc---CCC--eECcC
Confidence            4567888999999999999999887   554  67888

>PRK09866 hypothetical protein; Provisional

Probab=94.13  E-value=0.54  Score=49.22  Aligned_cols=30  Identities=20%  Similarity=0.104  Sum_probs=21.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      +.++.+-|..|+||||+.-++.      |..|+-.+
T Consensus        69 ~~~valvG~sgaGKSTLiNaL~------G~~Vlpt~   98 (741)
T PRK09866         69 EMVLAIVGTMKAGKSTTINAIV------GTEVLPNR   98 (741)
T ss_pred             ceEEEEECCCCCCHHHHHHHHh------CCccccCC
Confidence            3566777999999999998874      55555444

>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed

Probab=94.13  E-value=0.067  Score=51.68  Aligned_cols=34  Identities=24%  Similarity=0.166  Sum_probs=30.4

Q ss_pred             CCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        35 gKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      .-||+|||+++..||..+.++|++|.+|.=.-.+
T Consensus        58 ~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~   91 (325)
T PRK00652         58 TVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGG   91 (325)
T ss_pred             eCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCC
Confidence            3899999999999999999999999999866543

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=94.08  E-value=0.05  Score=46.69  Aligned_cols=31  Identities=32%  Similarity=0.358  Sum_probs=25.3

Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           32 FVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        32 ~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ++.|..|+||||+|..++..+   |  ..++|.|.-
T Consensus         2 ~l~G~~GsGKSTla~~l~~~l---~--~~~v~~D~~   32 (163)
T TIGR01313         2 VLMGVAGSGKSTIASALAHRL---G--AKFIEGDDL   32 (163)
T ss_pred             EEECCCCCCHHHHHHHHHHhc---C--CeEEeCccc
Confidence            577999999999999999876   3  456788753

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd01895 EngA2 EngA2 subfamily

Probab=94.06  E-value=3.1  Score=34.84  Aligned_cols=38  Identities=11%  Similarity=-0.060  Sum_probs=25.3

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|.............++..+...+.|+. +++|+.
T Consensus        86 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~  123 (174)
T cd01895          86 DVVLLVIDATEGITEQDLRIAGLILEEGKALV-IVVNKW  123 (174)
T ss_pred             CeEEEEEeCCCCcchhHHHHHHHHHhcCCCEE-EEEecc
Confidence            45666766544433455566777777787765 889998

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG2403 Predicted GTPase [General function prediction only]

Probab=94.03  E-value=0.082  Score=51.25  Aligned_cols=43  Identities=23%  Similarity=0.314  Sum_probs=36.6

Q ss_pred             hhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        22 ~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      |+....+.|.++.-.-|+|||+++..+|..|.++|+||++|-.
T Consensus       121 ~~~~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh  163 (449)
T COG2403         121 MLKLEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH  163 (449)
T ss_pred             hhhhcCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence            3333456677888788999999999999999999999999987

>PRK08118 topology modulation protein; Reviewed

Probab=93.99  E-value=0.054  Score=47.12  Aligned_cols=22  Identities=36%  Similarity=0.534  Sum_probs=18.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHH
Q 017873           31 VFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +++.|.+|+||||+|..|+..+
T Consensus         4 I~I~G~~GsGKSTlak~L~~~l   25 (167)
T PRK08118          4 IILIGSGGSGKSTLARQLGEKL   25 (167)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4566899999999999998765

>PRK04040 adenylate kinase; Provisional

Probab=93.98  E-value=0.072  Score=47.33  Aligned_cols=26  Identities=42%  Similarity=0.379  Sum_probs=23.2

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      +++++++|..|+||||++..++..+.
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~   27 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLK   27 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence            46788899999999999999999885

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=93.93  E-value=0.05  Score=45.40  Aligned_cols=31  Identities=26%  Similarity=0.395  Sum_probs=24.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      |++++|..|+||||+|..||..+   |.  -++|.|
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~---~~--~~~~~~   31 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKL---GL--PYLDTG   31 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh---CC--ceeccc
Confidence            57899999999999999999775   43  356666

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=93.90  E-value=0.075  Score=52.22  Aligned_cols=38  Identities=24%  Similarity=0.231  Sum_probs=31.5

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ....+|++|.||+|||++--.+-..+...|+.|+++-.
T Consensus        21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~   58 (364)
T PF05970_consen   21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAP   58 (364)
T ss_pred             CCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecc
Confidence            34567999999999999999999998887777776543

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>PRK13947 shikimate kinase; Provisional

Probab=93.88  E-value=0.086  Score=45.48  Aligned_cols=31  Identities=32%  Similarity=0.359  Sum_probs=25.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      +++.|-.|+||||++..||..|   |.+  .+|.|.
T Consensus         4 I~l~G~~GsGKst~a~~La~~l---g~~--~id~d~   34 (171)
T PRK13947          4 IVLIGFMGTGKTTVGKRVATTL---SFG--FIDTDK   34 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh---CCC--EEECch
Confidence            6778999999999999999876   554  477774

>PRK00698 tmk thymidylate kinase; Validated

Probab=93.84  E-value=0.11  Score=46.06  Aligned_cols=35  Identities=26%  Similarity=0.410  Sum_probs=29.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      +++++.|--|+||||++..|+..+...|+.|....
T Consensus         4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~   38 (205)
T PRK00698          4 MFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTR   38 (205)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEee
Confidence            46777899999999999999999998887666543

>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase

Probab=93.81  E-value=0.083  Score=50.73  Aligned_cols=32  Identities=31%  Similarity=0.332  Sum_probs=29.2

Q ss_pred             CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           36 KGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        36 KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      -||+|||.++..||..|.++|++|.+|+=.-.
T Consensus        38 vGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg   69 (311)
T TIGR00682        38 VGGTGKTPVVVWLAELLKDRGLRVGVLSRGYG   69 (311)
T ss_pred             cCCcChHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            69999999999999999999999999986533

Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=93.80  E-value=0.63  Score=49.70  Aligned_cols=36  Identities=31%  Similarity=0.374  Sum_probs=27.1

Q ss_pred             hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      .|.+.+.++ -...++++|..|+||||++..+|..|-
T Consensus        27 ~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn   63 (830)
T PRK07003         27 ALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN   63 (830)
T ss_pred             HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            455555543 234557889999999999999999885

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=93.79  E-value=0.12  Score=47.75  Aligned_cols=69  Identities=16%  Similarity=0.176  Sum_probs=56.1

Q ss_pred             hhhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhc
Q 017873            8 QDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ   76 (365)
Q Consensus         8 ~~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~   76 (365)
                      +++..+.+..|..+++.+.+..=+...|--|+|||++.-++...++..|.|++=|+-+-=.++..++..
T Consensus        32 ie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~  100 (249)
T PF05673_consen   32 IERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDL  100 (249)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHH
Confidence            455667788888888888766666778999999999999999999999999888877765677666654

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=93.78  E-value=0.073  Score=46.37  Aligned_cols=26  Identities=38%  Similarity=0.604  Sum_probs=20.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEE
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVL   60 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVL   60 (365)
                      +.++|.+||||||+|-.|+    ..|+++.
T Consensus         3 I~ITGTPGvGKTT~~~~L~----~lg~~~i   28 (180)
T COG1936           3 IAITGTPGVGKTTVCKLLR----ELGYKVI   28 (180)
T ss_pred             EEEeCCCCCchHHHHHHHH----HhCCcee
Confidence            5667999999999999887    4566554

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=93.78  E-value=0.073  Score=52.17  Aligned_cols=44  Identities=23%  Similarity=0.271  Sum_probs=34.4

Q ss_pred             hhhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHH
Q 017873            8 QDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSIL   51 (365)
Q Consensus         8 ~~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~   51 (365)
                      .++.+=..-.-|++|++.+...-+++.|.+|+||||+|..+|..
T Consensus        28 GQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~   71 (436)
T COG2256          28 GQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGT   71 (436)
T ss_pred             ChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHh
Confidence            34444444555888888777777899999999999999999986

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=93.77  E-value=0.063  Score=42.97  Aligned_cols=25  Identities=28%  Similarity=0.424  Sum_probs=22.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEV   55 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~   55 (365)
                      +++.|.+|+|||+++..||..+.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~~   25 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLKH   25 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHH
Confidence            4678999999999999999999864

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]

Probab=93.71  E-value=2.4  Score=37.59  Aligned_cols=34  Identities=24%  Similarity=0.201  Sum_probs=28.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ++++| .|-||||-|.-+|....-+|+||+++=+=
T Consensus        32 ~V~TG-~GKGKTTAAlG~alRa~GhG~rv~vvQFi   65 (198)
T COG2109          32 IVFTG-NGKGKTTAALGLALRALGHGLRVGVVQFI   65 (198)
T ss_pred             EEEec-CCCChhHHHHHHHHHHhcCCCEEEEEEEe
Confidence            34444 45799999999999999999999999874

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.68  E-value=0.71  Score=48.49  Aligned_cols=37  Identities=38%  Similarity=0.399  Sum_probs=27.8

Q ss_pred             hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873           18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLAE   54 (365)
Q Consensus        18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la~   54 (365)
                      .|.+++.++ -....+++|..|+||||+|..+|.++--
T Consensus        27 ~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC   64 (618)
T PRK14951         27 ALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC   64 (618)
T ss_pred             HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            455555543 3345688899999999999999998853

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=93.65  E-value=0.07  Score=53.01  Aligned_cols=30  Identities=27%  Similarity=0.390  Sum_probs=26.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCE
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSV   59 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rV   59 (365)
                      =++++|.+|.||||+|.++|..++.+|+=|
T Consensus       265 GILIAG~PGaGKsTFaqAlAefy~~~GkiV  294 (604)
T COG1855         265 GILIAGAPGAGKSTFAQALAEFYASQGKIV  294 (604)
T ss_pred             ceEEecCCCCChhHHHHHHHHHHHhcCcEE
Confidence            356789999999999999999999999933

>PLN03025 replication factor C subunit; Provisional

Probab=93.65  E-value=0.1  Score=50.21  Aligned_cols=49  Identities=18%  Similarity=0.224  Sum_probs=33.7

Q ss_pred             hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .|+.++.++...-+++.|..|+||||++..+|..+-..+++..+++.+.
T Consensus        24 ~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~   72 (319)
T PLN03025         24 RLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA   72 (319)
T ss_pred             HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence            3555555443334567999999999999999999865554444555543

>PLN02924 thymidylate kinase

Probab=93.55  E-value=0.14  Score=46.59  Aligned_cols=37  Identities=16%  Similarity=0.126  Sum_probs=32.3

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ..++++-|--|+||||.+..|+.+|..+|++|.++..
T Consensus        16 g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~e   52 (220)
T PLN02924         16 GALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRF   52 (220)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeC
Confidence            3577778999999999999999999999999876654

>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional

Probab=93.54  E-value=0.11  Score=50.40  Aligned_cols=38  Identities=29%  Similarity=0.254  Sum_probs=32.3

Q ss_pred             EEEEeC--CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           30 WVFVGG--KGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        30 i~~~sg--KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ++.++.  -||+|||.++..||..|.++|++|.+++=.-.
T Consensus        58 VIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg   97 (338)
T PRK01906         58 VVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYG   97 (338)
T ss_pred             EEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCC
Confidence            444443  89999999999999999999999999996644

>PRK03839 putative kinase; Provisional

Probab=93.45  E-value=0.094  Score=45.83  Aligned_cols=30  Identities=33%  Similarity=0.410  Sum_probs=24.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++.|-.|+||||++..||..+   |.  -.+|+|
T Consensus         3 I~l~G~pGsGKsT~~~~La~~~---~~--~~id~d   32 (180)
T PRK03839          3 IAITGTPGVGKTTVSKLLAEKL---GY--EYVDLT   32 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---CC--cEEehh
Confidence            6777999999999999998876   33  457776

>PRK07261 topology modulation protein; Provisional

Probab=93.45  E-value=0.092  Score=45.78  Aligned_cols=22  Identities=32%  Similarity=0.356  Sum_probs=18.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHH
Q 017873           31 VFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +++.|.+|+||||+|..|+..+
T Consensus         3 i~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          3 IAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            4556899999999999987654

>PLN02348 phosphoribulokinase

Probab=93.38  E-value=0.16  Score=50.14  Aligned_cols=43  Identities=21%  Similarity=0.288  Sum_probs=34.7

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC---------------CCCEEEEeCCCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV---------------RPSVLIISTDPAH   68 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~---------------G~rVLLiD~D~~~   68 (365)
                      +.+.|+-++|-.|+||||+|..|+..|...               +..|.+|.+|--+
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh  104 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH  104 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence            345677899999999999999999999754               2468899998443

>cd01889 SelB_euk SelB subfamily

Probab=93.38  E-value=3.5  Score=36.09  Aligned_cols=20  Identities=40%  Similarity=0.275  Sum_probs=16.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q 017873           31 VFVGGKGGVGKTTCSSILSI   50 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~   50 (365)
                      +.+.|..|+||||+...+..
T Consensus         3 i~i~G~~~~GKstLi~~l~~   22 (192)
T cd01889           3 VGVLGHVDSGKTSLAKALSE   22 (192)
T ss_pred             EEEEecCCCCHHHHHHHHHh
Confidence            45668999999999877754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=93.37  E-value=1.8  Score=46.04  Aligned_cols=36  Identities=33%  Similarity=0.458  Sum_probs=27.0

Q ss_pred             hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      .|...+.++ -..-++++|..|+||||+|..+|..+-
T Consensus        27 ~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln   63 (709)
T PRK08691         27 ALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN   63 (709)
T ss_pred             HHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence            355555443 334568889999999999999999875

>TIGR00376 DNA helicase, putative

Probab=93.33  E-value=0.11  Score=54.73  Aligned_cols=35  Identities=26%  Similarity=0.282  Sum_probs=32.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      .++++.|.+|+||||+.+.+...+.+.|++||++.
T Consensus       174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a  208 (637)
T TIGR00376       174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTA  208 (637)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence            46788999999999999999999999999999986

The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=93.32  E-value=0.081  Score=46.13  Aligned_cols=24  Identities=21%  Similarity=0.468  Sum_probs=21.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      ++++++|-+|+||||+|-.|+..+
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~   26 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVL   26 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            478999999999999999998775

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK13808 adenylate kinase; Provisional

Probab=93.26  E-value=1.7  Score=42.17  Aligned_cols=53  Identities=11%  Similarity=0.038  Sum_probs=30.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCC
Q 017873          197 GEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE  252 (365)
Q Consensus       197 ~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~g  252 (365)
                      ..+.+...+..+++....+.+.+.+..   .+++...+...-.....+...|...+
T Consensus       143 ~~E~i~kRL~~Y~~~t~PLl~~Y~e~~---~lv~IDa~~siEEV~eeI~~~L~~~~  195 (333)
T PRK13808        143 TPEVLAKRLASYRAQTEPLVHYYSEKR---KLLTVDGMMTIDEVTREIGRVLAAVG  195 (333)
T ss_pred             CHHHHHHHHHHHHHHhHHHHHHhhccC---cEEEEECCCCHHHHHHHHHHHHHHHh
Confidence            455666677777777777788877642   34444444333334455555555443

>PRK00049 elongation factor Tu; Reviewed

Probab=93.23  E-value=1.2  Score=44.21  Aligned_cols=39  Identities=8%  Similarity=0.009  Sum_probs=30.1

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|..+..-....+++.+..+...|+|..-+++|+.
T Consensus       100 D~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~  138 (396)
T PRK00049        100 DGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKC  138 (396)
T ss_pred             CEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeec
Confidence            466677666655557788899999999988765689999

>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional

Probab=93.22  E-value=0.13  Score=53.75  Aligned_cols=39  Identities=23%  Similarity=0.149  Sum_probs=35.2

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++++-+.|..|+||||+...|...|..+|+||.+|-.|
T Consensus         9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~   47 (597)
T PRK14491          9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHA   47 (597)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcC
Confidence            467777778899999999999999999999999999875

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=93.21  E-value=0.11  Score=43.61  Aligned_cols=43  Identities=23%  Similarity=0.167  Sum_probs=32.1

Q ss_pred             hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873            9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      .++...+-..|...+.  +..+++++|.-|+||||++..++..+.
T Consensus         5 ~~~t~~l~~~l~~~l~--~~~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150         5 EKAMDKFGKAFAKPLD--FGTVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             HHHHHHHHHHHHHhCC--CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            4455556666666663  345788899999999999999999873

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK12338 hypothetical protein; Provisional

Probab=93.21  E-value=0.085  Score=50.69  Aligned_cols=34  Identities=32%  Similarity=0.459  Sum_probs=27.8

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +.+++++|.+|+||||+|..+|..+   |.+ .+++.|
T Consensus         4 p~ii~i~G~sGsGKST~a~~la~~l---~~~-~~~~tD   37 (319)
T PRK12338          4 PYVILIGSASGIGKSTIASELARTL---NIK-HLIETD   37 (319)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHC---CCe-EEccCh
Confidence            4688999999999999999999876   553 466777

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=93.21  E-value=1.3  Score=46.83  Aligned_cols=36  Identities=31%  Similarity=0.392  Sum_probs=26.4

Q ss_pred             hHHhhhcCCC-eEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           18 SVRNILEQDS-LKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        18 ~l~~~~~~~~-~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      .|.+.+.++. ....+++|..|+||||+|..+|..+-
T Consensus        27 ~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~   63 (647)
T PRK07994         27 ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN   63 (647)
T ss_pred             HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence            3455554432 23457889999999999999999875

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=93.17  E-value=0.12  Score=49.55  Aligned_cols=48  Identities=19%  Similarity=0.212  Sum_probs=33.2

Q ss_pred             hhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CCEEEEeC
Q 017873           17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVR--PSVLIIST   64 (365)
Q Consensus        17 ~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G--~rVLLiD~   64 (365)
                      ..|...+.++....+++.|..|+||||++..+|..+...+  .+++.+++
T Consensus        25 ~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~   74 (337)
T PRK12402         25 ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV   74 (337)
T ss_pred             HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence            3455555554433567889999999999999999886443  34555554

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=93.16  E-value=0.11  Score=44.81  Aligned_cols=32  Identities=34%  Similarity=0.419  Sum_probs=25.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +.+++.|-.|+||||++..||..+   |.  -++|.|
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~l---g~--~~~d~D   34 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQAL---GY--RFVDTD   34 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh---CC--CEEEcc
Confidence            346667999999999999999876   54  467888

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=93.16  E-value=0.13  Score=46.55  Aligned_cols=37  Identities=35%  Similarity=0.399  Sum_probs=31.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ..|+-++|-+|+||||+|..+...+...  ++.+|..|.
T Consensus         8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~   44 (218)
T COG0572           8 VIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDD   44 (218)
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeeccc
Confidence            3577888999999999999999988643  899999994

>PRK13973 thymidylate kinase; Provisional

Probab=93.04  E-value=0.18  Score=45.63  Aligned_cols=36  Identities=25%  Similarity=0.370  Sum_probs=30.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      +++++-|--|+||||.+..|+.+|...|++|.....
T Consensus         4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~   39 (213)
T PRK13973          4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTRE   39 (213)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence            456668999999999999999999999998866643

>PRK01184 hypothetical protein; Provisional

Probab=93.03  E-value=0.12  Score=45.32  Aligned_cols=32  Identities=28%  Similarity=0.309  Sum_probs=23.1

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      |.++++.|..|+||||++. +   +.+.|..+  +|+|
T Consensus         1 ~~~i~l~G~~GsGKsT~a~-~---~~~~g~~~--i~~~   32 (184)
T PRK01184          1 MKIIGVVGMPGSGKGEFSK-I---AREMGIPV--VVMG   32 (184)
T ss_pred             CcEEEEECCCCCCHHHHHH-H---HHHcCCcE--EEhh
Confidence            4578899999999999864 3   34567644  6654

>PLN02200 adenylate kinase family protein

Probab=93.02  E-value=0.11  Score=47.68  Aligned_cols=26  Identities=27%  Similarity=0.212  Sum_probs=22.5

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      ...++++.|.+|+||||+|..+|..+
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~   67 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETF   67 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34688999999999999999998765

>PRK04195 replication factor C large subunit; Provisional

Probab=92.96  E-value=0.19  Score=51.28  Aligned_cols=39  Identities=23%  Similarity=0.223  Sum_probs=31.1

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      +...+.++++|..|+||||++.++|..+   |..++-+++..
T Consensus        36 g~~~~~lLL~GppG~GKTtla~ala~el---~~~~ielnasd   74 (482)
T PRK04195         36 GKPKKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASD   74 (482)
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEcccc
Confidence            3346778899999999999999998865   77787777643

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.96  E-value=2.1  Score=44.99  Aligned_cols=37  Identities=24%  Similarity=0.342  Sum_probs=27.8

Q ss_pred             hhHHhhhcCCC-eEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           17 GSVRNILEQDS-LKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        17 ~~l~~~~~~~~-~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      ..|.+++.++. ..-++++|..|+||||+|..+|.++-
T Consensus        26 ~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~   63 (624)
T PRK14959         26 AILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN   63 (624)
T ss_pred             HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence            34556565432 34567889999999999999999874

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=92.95  E-value=0.12  Score=52.06  Aligned_cols=37  Identities=38%  Similarity=0.486  Sum_probs=29.9

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      +.+.+++++|-+|+||||++..+|..+   |. +.+|.+|.
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~l---g~-~~ii~tD~  289 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRL---GI-TRIVSTDA  289 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc---CC-cEEeehhH
Confidence            447888999999999999999999875   33 34788884

>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []

Probab=92.94  E-value=0.13  Score=49.72  Aligned_cols=38  Identities=32%  Similarity=0.295  Sum_probs=32.1

Q ss_pred             EEEEeC--CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           30 WVFVGG--KGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        30 i~~~sg--KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ++.++.  -||+|||-++..||..|.++|++|.+++=--.
T Consensus        37 VIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg   76 (326)
T PF02606_consen   37 VISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGYG   76 (326)
T ss_pred             EEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCCC
Confidence            444443  89999999999999999999999999987644

This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process

>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]

Probab=92.90  E-value=0.22  Score=48.09  Aligned_cols=43  Identities=23%  Similarity=0.241  Sum_probs=36.8

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      .+++++++ |.--+||||++--|-.++.++|+|.+.+|+|++.+
T Consensus       102 ~GPrv~vV-Gp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~  144 (415)
T KOG2749|consen  102 YGPRVMVV-GPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQG  144 (415)
T ss_pred             cCCEEEEE-CCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCC
Confidence            36677766 55679999999999999999999999999998744

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=92.85  E-value=0.12  Score=49.51  Aligned_cols=34  Identities=32%  Similarity=0.288  Sum_probs=28.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      +++++++|..|+|||++|..||..+     .+.+|++|.
T Consensus         4 ~~~i~i~GptgsGKt~la~~la~~~-----~~~iis~Ds   37 (307)
T PRK00091          4 PKVIVIVGPTASGKTALAIELAKRL-----NGEIISADS   37 (307)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHhC-----CCcEEeccc
Confidence            4688999999999999999999865     356788884

>PRK03003 GTP-binding protein Der; Reviewed

Probab=92.84  E-value=0.71  Score=46.99  Aligned_cols=22  Identities=36%  Similarity=0.365  Sum_probs=17.2

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHH
Q 017873           28 LKWVFVGGKGGVGKTTCSSILS   49 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA   49 (365)
                      +..+.+-|.+||||||+.-.+.
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~   59 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRIL   59 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHh
Confidence            3445666899999999988775

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=92.84  E-value=0.12  Score=52.08  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=33.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .-+++.|..|+|||+++.++|..+...|.+|+.++++
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~  178 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE  178 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence            4467779999999999999999999889999999975

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=92.81  E-value=0.088  Score=45.97  Aligned_cols=31  Identities=29%  Similarity=0.255  Sum_probs=24.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ++++.|.+|+||||+|..||..+   |  +..|+.+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~---~--~~~is~~   31 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENF---G--FTHLSAG   31 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc---C--CeEEECC
Confidence            46888999999999999998865   3  4566654

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=92.79  E-value=0.22  Score=44.48  Aligned_cols=34  Identities=26%  Similarity=0.363  Sum_probs=26.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEe
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIS   63 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD   63 (365)
                      +++++|..|+||||+..+++..+... +.+++.+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e   37 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE   37 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence            57889999999999999998888754 34455444

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=92.78  E-value=0.71  Score=42.05  Aligned_cols=39  Identities=26%  Similarity=0.208  Sum_probs=31.1

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCC-EEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPS-VLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~r-VLLiD~D~   66 (365)
                      |-+++++|-+-+||||.|..|..+|..+|.| +..|--|.
T Consensus         1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~de   40 (281)
T KOG3062|consen    1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDE   40 (281)
T ss_pred             CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechh
Confidence            3468899999999999999999999999954 44444443

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=92.77  E-value=0.13  Score=48.66  Aligned_cols=28  Identities=25%  Similarity=0.322  Sum_probs=24.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRP   57 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~   57 (365)
                      -+++.|.+|+||||+|..+|..+...|.
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~   87 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQILHRLGY   87 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence            4677799999999999999999998775

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=92.77  E-value=0.2  Score=40.26  Aligned_cols=33  Identities=24%  Similarity=0.383  Sum_probs=27.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEe
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEV--RPSVLIIS   63 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD   63 (365)
                      +++.+..|+|||+++..++..+...  +.+++++-
T Consensus         3 ~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~   37 (144)
T cd00046           3 VLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA   37 (144)
T ss_pred             EEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence            5778999999999999999999863  46777774

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>PRK13764 ATPase; Provisional

Probab=92.72  E-value=0.21  Score=52.17  Aligned_cols=35  Identities=23%  Similarity=0.399  Sum_probs=29.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      ..++++|..|+||||++.+++..+...|+.|+-++
T Consensus       258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiE  292 (602)
T PRK13764        258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTME  292 (602)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEEC
Confidence            34688899999999999999999988887665655

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=92.71  E-value=0.17  Score=45.64  Aligned_cols=36  Identities=28%  Similarity=0.327  Sum_probs=26.2

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CCEEEEe
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVR-PSVLIIS   63 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G-~rVLLiD   63 (365)
                      ..++++.|+.|+|||++|.+.|..+-..| ++-+++-
T Consensus        19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~   55 (205)
T PF02562_consen   19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT   55 (205)
T ss_dssp             -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            45889999999999999999999888766 3444444

; GO: 0005524 ATP binding; PDB: 3B85_A.

>PRK06851 hypothetical protein; Provisional

Probab=92.67  E-value=0.32  Score=47.77  Aligned_cols=40  Identities=18%  Similarity=0.179  Sum_probs=35.1

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ...++++++|.+|+||||+...++..+...|+.|-.+=+-
T Consensus        28 ~~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~   67 (367)
T PRK06851         28 GANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCS   67 (367)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence            4678899999999999999999999999999998877443

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=92.66  E-value=0.1  Score=44.42  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=18.2

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHH
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSIL   51 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~   51 (365)
                      +.| ++.|.+|+||||++..+|..
T Consensus         8 PNI-LvtGTPG~GKstl~~~lae~   30 (176)
T KOG3347|consen    8 PNI-LVTGTPGTGKSTLAERLAEK   30 (176)
T ss_pred             CCE-EEeCCCCCCchhHHHHHHHH
Confidence            344 45589999999999999954

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=92.65  E-value=0.14  Score=51.07  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=32.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD~D   65 (365)
                      ..+++.|..|+|||+++.++|..+.+.  |.+|+.++++
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~  175 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE  175 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence            457889999999999999999999876  7889999765

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=92.63  E-value=0.14  Score=49.23  Aligned_cols=32  Identities=22%  Similarity=0.325  Sum_probs=26.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..+++.|..|+||||++..||..+   |.+++  |+|
T Consensus       134 ~~I~l~G~~GsGKStvg~~La~~L---g~~~i--d~D  165 (309)
T PRK08154        134 RRIALIGLRGAGKSTLGRMLAARL---GVPFV--ELN  165 (309)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc---CCCEE--eHH
Confidence            467788999999999999998866   66654  777

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=92.60  E-value=0.17  Score=48.36  Aligned_cols=36  Identities=36%  Similarity=0.389  Sum_probs=29.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEe
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIIS   63 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD   63 (365)
                      +..++++|..|+||||+..++...+...  +.|++.|+
T Consensus       132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiE  169 (299)
T TIGR02782       132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIE  169 (299)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEEC
Confidence            3456789999999999999999888764  67888876

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=92.57  E-value=0.21  Score=43.71  Aligned_cols=39  Identities=26%  Similarity=0.339  Sum_probs=32.6

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D   65 (365)
                      ++..+++.|..|||||.+|-.+|..+- ....+.+.+|+-
T Consensus         2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s   41 (171)
T PF07724_consen    2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMS   41 (171)
T ss_dssp             -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGG
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhh
Confidence            345678889999999999999999998 566788888886

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=92.50  E-value=1.1  Score=44.76  Aligned_cols=38  Identities=16%  Similarity=0.048  Sum_probs=23.2

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|..+..........+.++|++.+.|+. +|+|+.
T Consensus        80 d~vl~vvD~~~~~~~~d~~i~~~l~~~~~pii-lVvNK~  117 (429)
T TIGR03594        80 DVILFVVDGREGLTPEDEEIAKWLRKSGKPVI-LVANKI  117 (429)
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEE-EEEECc
Confidence            35566665544333444566777777777764 677887

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK13948 shikimate kinase; Provisional

Probab=92.48  E-value=0.19  Score=44.38  Aligned_cols=34  Identities=35%  Similarity=0.450  Sum_probs=27.1

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ....+++.|-.|+||||++..||..+   |.+  +||+|
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~l---g~~--~iD~D   42 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRAL---MLH--FIDTD   42 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHc---CCC--EEECC
Confidence            34567788999999999999998876   554  45999

>PLN03127 Elongation factor Tu; Provisional

Probab=92.44  E-value=1.5  Score=44.27  Aligned_cols=39  Identities=10%  Similarity=0.048  Sum_probs=29.9

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|.....-...++++.+..+...|++..-+++|+.
T Consensus       149 D~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKi  187 (447)
T PLN03127        149 DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKV  187 (447)
T ss_pred             CEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEee
Confidence            356666666554557789999999999998655789999

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=92.42  E-value=0.43  Score=42.63  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=23.3

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      |.|+-.+|--|+||||++--+    ...|  +-+||+|
T Consensus         1 M~iVGLTGgiatGKStVs~~f----~~~G--~~vIDaD   32 (225)
T KOG3220|consen    1 MLIVGLTGGIATGKSTVSQVF----KALG--IPVIDAD   32 (225)
T ss_pred             CeEEEeecccccChHHHHHHH----HHcC--CcEecHH
Confidence            356666777889999997654    3445  5789999

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=92.30  E-value=0.16  Score=47.45  Aligned_cols=38  Identities=21%  Similarity=0.252  Sum_probs=32.5

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      .+..++++|..|+||||+..++...+-..+.+++.|.-
T Consensus       126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd  163 (270)
T PF00437_consen  126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIED  163 (270)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEES
T ss_pred             cceEEEEECCCccccchHHHHHhhhccccccceEEecc
Confidence            45778888999999999999998888777788888884

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=92.27  E-value=0.2  Score=44.75  Aligned_cols=32  Identities=22%  Similarity=0.219  Sum_probs=25.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++.+.|..|+||||++..++..+   |.  -++|+|
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~---g~--~~i~~D   33 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQK---GI--PILDAD   33 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh---CC--eEeeCc
Confidence            367888999999999999887532   65  456998

>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI

Probab=92.25  E-value=0.56  Score=55.62  Aligned_cols=46  Identities=24%  Similarity=0.465  Sum_probs=36.9

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +..++.+ ..++.+++|-+|+||||+...+...+...|++|.++-..
T Consensus       438 v~~il~s-~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPT  483 (1960)
T TIGR02760       438 VSTLFTS-TKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAG  483 (1960)
T ss_pred             HHHHHhC-CCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            3444433 457888889999999999999999998999999998643

This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.23  E-value=1.5  Score=47.83  Aligned_cols=36  Identities=28%  Similarity=0.354  Sum_probs=26.6

Q ss_pred             hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      .|++++.++ -....+++|..|+||||+|..+|..+-
T Consensus        27 ~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln   63 (944)
T PRK14949         27 ALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN   63 (944)
T ss_pred             HHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence            355555443 234457889999999999999999874

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=92.16  E-value=0.21  Score=35.99  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=20.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      +.+++|+.|+||||+--++-..|-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHc
Confidence            678899999999999988877764

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=92.15  E-value=0.17  Score=44.39  Aligned_cols=30  Identities=27%  Similarity=0.350  Sum_probs=24.7

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ++.++|..|+||||++..++.    .|.  .++|+|
T Consensus         1 ii~itG~~gsGKst~~~~l~~----~g~--~~i~~D   30 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE----LGI--PVIDAD   30 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH----CCC--CEEecC
Confidence            467889999999999998876    565  468888

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>CHL00181 cbbX CbbX; Provisional

Probab=92.12  E-value=0.18  Score=47.86  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=23.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRP   57 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~   57 (365)
                      +++.|.+|+||||+|..+|..+...|.
T Consensus        62 ill~G~pGtGKT~lAr~la~~~~~~g~   88 (287)
T CHL00181         62 MSFTGSPGTGKTTVALKMADILYKLGY   88 (287)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            567799999999999999999887665

>PRK14528 adenylate kinase; Provisional

Probab=92.10  E-value=0.2  Score=44.29  Aligned_cols=24  Identities=38%  Similarity=0.398  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +.+++.|.+|+||||+|..+|..+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~   25 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERL   25 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            346778999999999999998765

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=92.08  E-value=0.16  Score=44.25  Aligned_cols=25  Identities=28%  Similarity=0.312  Sum_probs=21.2

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      ..++++.|..|+||||++..+|..+
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3567778889999999999999765

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=91.98  E-value=0.24  Score=47.77  Aligned_cols=44  Identities=23%  Similarity=0.243  Sum_probs=37.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~   77 (365)
                      +++.|..|+||||++..+|..+   |.+..-|.+++.-+..+++|..
T Consensus        67 ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~~DliG~~  110 (327)
T TIGR01650        67 VMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSRIDLVGKD  110 (327)
T ss_pred             EEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCChhhcCCCc
Confidence            6667999999999999999876   6788899999887778888854

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=91.88  E-value=5.1  Score=35.74  Aligned_cols=39  Identities=15%  Similarity=0.065  Sum_probs=25.9

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|..........+.+....+...+.+..-+|+|+.
T Consensus       102 d~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~  140 (208)
T cd04166         102 DLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKM  140 (208)
T ss_pred             CEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEch
Confidence            356666666544455666667777777876544679999

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=91.88  E-value=0.21  Score=44.44  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=26.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      |.++.+.|.-|+||||++..|+.    .|.  -++|+|
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~----~g~--~~i~~D   33 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE----LGA--PVIDAD   33 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH----cCC--EEEEec
Confidence            46788889999999999998875    464  679999

>PLN02165 adenylate isopentenyltransferase

Probab=91.78  E-value=0.14  Score=49.39  Aligned_cols=40  Identities=28%  Similarity=0.266  Sum_probs=29.9

Q ss_pred             hhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        22 ~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      |+.+....++++.|..|+||||+|..||..+.     .-+|++|.
T Consensus        37 ~~~~~~g~iivIiGPTGSGKStLA~~LA~~l~-----~eIIsaDs   76 (334)
T PLN02165         37 MEQNCKDKVVVIMGATGSGKSRLSVDLATRFP-----SEIINSDK   76 (334)
T ss_pred             cccCCCCCEEEEECCCCCcHHHHHHHHHHHcC-----CceecCCh
Confidence            34444455788889999999999999888752     25788883

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=91.77  E-value=0.19  Score=50.80  Aligned_cols=37  Identities=22%  Similarity=0.358  Sum_probs=33.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD~D   65 (365)
                      .-+++.|..|+|||+++.++|..+.+.  |.+|+.+.++
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~  187 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE  187 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence            457889999999999999999999876  7889999886

>TIGR00503 prfC peptide chain release factor 3

Probab=91.73  E-value=1.4  Score=45.61  Aligned_cols=38  Identities=11%  Similarity=-0.012  Sum_probs=28.6

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|..+.......++.+++.++..++|+ -+++|+.
T Consensus       105 D~aIlVvDa~~gv~~~t~~l~~~~~~~~~Pi-ivviNKi  142 (527)
T TIGR00503       105 DNCLMVIDAAKGVETRTRKLMEVTRLRDTPI-FTFMNKL  142 (527)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHhcCCCE-EEEEECc
Confidence            4667777665544556788888888889885 5788999

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=91.70  E-value=0.2  Score=42.09  Aligned_cols=30  Identities=30%  Similarity=0.419  Sum_probs=24.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++.|-.|+||||++..||..+   |.+  .+|.|
T Consensus         2 i~l~G~~GsGKstla~~la~~l---~~~--~~~~d   31 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKAL---GLP--FVDLD   31 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh---CCC--EEEch
Confidence            5678999999999999999876   554  55777

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK12736 elongation factor Tu; Reviewed

Probab=91.70  E-value=2.6  Score=41.79  Aligned_cols=39  Identities=10%  Similarity=0.048  Sum_probs=29.7

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|.....-....+++.+..+...|++..-+++|+.
T Consensus       100 d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~  138 (394)
T PRK12736        100 DGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKV  138 (394)
T ss_pred             CEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEec
Confidence            356677666554556788888889999988666789999

>PRK08356 hypothetical protein; Provisional

Probab=91.69  E-value=0.28  Score=43.61  Aligned_cols=26  Identities=35%  Similarity=0.225  Sum_probs=21.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPS   58 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~r   58 (365)
                      .+++++|+.|+||||+|-.|+    +.|..
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~----~~g~~   31 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFE----EKGFC   31 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHH----HCCCc
Confidence            467889999999999999884    35765

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=91.67  E-value=0.19  Score=46.90  Aligned_cols=27  Identities=37%  Similarity=0.572  Sum_probs=23.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVR   56 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G   56 (365)
                      -+++.|.+|+||||+|..+|..+...|
T Consensus        44 ~vll~GppGtGKTtlA~~ia~~l~~~~   70 (261)
T TIGR02881        44 HMIFKGNPGTGKTTVARILGKLFKEMN   70 (261)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence            457789999999999999999986554

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=91.59  E-value=3  Score=45.41  Aligned_cols=36  Identities=25%  Similarity=0.344  Sum_probs=27.1

Q ss_pred             hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      .|.+++.++ -..-++++|..|+||||+|..||..|-
T Consensus        26 ~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~   62 (824)
T PRK07764         26 PLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN   62 (824)
T ss_pred             HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            355555543 234467889999999999999999884

>PRK13695 putative NTPase; Provisional

Probab=91.57  E-value=0.32  Score=42.25  Aligned_cols=30  Identities=37%  Similarity=0.311  Sum_probs=24.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEE
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVL   60 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVL   60 (365)
                      +++.|.+|+||||+...++..+...|.++.
T Consensus         3 i~ltG~~G~GKTTll~~i~~~l~~~G~~~~   32 (174)
T PRK13695          3 IGITGPPGVGKTTLVLKIAELLKEEGYKVG   32 (174)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence            455688999999999999988877787764

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=91.57  E-value=0.23  Score=48.34  Aligned_cols=61  Identities=21%  Similarity=0.289  Sum_probs=46.6

Q ss_pred             chhhhhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873            5 DQDQDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus         5 ~~~~~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      |+-.++.+=....-|+.++++....-+++.|.+|+||||+|..+|..-....++-+=+++-
T Consensus       139 dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt  199 (554)
T KOG2028|consen  139 DYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT  199 (554)
T ss_pred             HhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence            4445556656677788899887667789999999999999999998866666666555554

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=91.52  E-value=0.28  Score=46.59  Aligned_cols=47  Identities=17%  Similarity=0.247  Sum_probs=33.6

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      |...+.++....+++.|..|+||||++..++..+...+.+...++++
T Consensus        29 l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~   75 (319)
T PRK00440         29 LKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN   75 (319)
T ss_pred             HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence            44444444333458899999999999999999987666555556654

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=91.52  E-value=0.26  Score=43.29  Aligned_cols=30  Identities=30%  Similarity=0.293  Sum_probs=23.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++.|.+|+||||+|..||..+   |  +..+++|
T Consensus         2 I~i~G~pGsGKst~a~~La~~~---~--~~~i~~~   31 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKY---G--LPHISTG   31 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc---C--CeEEECc
Confidence            5677899999999999998864   4  4567765

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=91.52  E-value=3.9  Score=42.26  Aligned_cols=35  Identities=40%  Similarity=0.451  Sum_probs=25.7

Q ss_pred             HHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           19 VRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        19 l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      |.+.+.++ -....+++|..|+||||+|..+|..+-
T Consensus        28 L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~   63 (527)
T PRK14969         28 LTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN   63 (527)
T ss_pred             HHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            44444442 334457889999999999999999874

>PLN02422 dephospho-CoA kinase

Probab=91.49  E-value=0.25  Score=45.42  Aligned_cols=31  Identities=23%  Similarity=0.288  Sum_probs=25.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++.++|.-|+||||++..|+    +.|.  -++|+|
T Consensus         2 ~~igltG~igsGKstv~~~l~----~~g~--~~idaD   32 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFK----SSGI--PVVDAD   32 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHH----HCCC--eEEehh
Confidence            478889999999999999887    3566  469999

>PRK14527 adenylate kinase; Provisional

Probab=91.42  E-value=0.21  Score=44.09  Aligned_cols=25  Identities=36%  Similarity=0.280  Sum_probs=21.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      ..++++.|.+|+||||+|..+|..+
T Consensus         6 ~~~i~i~G~pGsGKsT~a~~La~~~   30 (191)
T PRK14527          6 NKVVIFLGPPGAGKGTQAERLAQEL   30 (191)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4577888999999999999998766

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=91.41  E-value=0.19  Score=43.06  Aligned_cols=21  Identities=29%  Similarity=0.358  Sum_probs=16.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q 017873           31 VFVGGKGGVGKTTCSSILSIL   51 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~   51 (365)
                      ++++|-.|+||||++.+||..
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            456688899999999999976

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=91.33  E-value=0.46  Score=45.09  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=25.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .-+++.|..|+|||+++.++|..+   +.++..++..
T Consensus        31 ~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~~~~   64 (305)
T TIGR00635        31 DHLLLYGPPGLGKTTLAHIIANEM---GVNLKITSGP   64 (305)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh---CCCEEEeccc
Confidence            346788999999999999998866   3445555543

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK14531 adenylate kinase; Provisional

Probab=91.31  E-value=0.23  Score=43.69  Aligned_cols=24  Identities=25%  Similarity=0.270  Sum_probs=20.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      ..+++.|.+|+||||++..||..+
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~   26 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAH   26 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            346778999999999999998875

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=91.26  E-value=1.8  Score=44.68  Aligned_cols=38  Identities=13%  Similarity=0.022  Sum_probs=28.9

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|..+..-....++++++.+...++|+. +++|+.
T Consensus       104 D~aIlVvDa~~gv~~~t~~l~~~~~~~~iPii-v~iNK~  141 (526)
T PRK00741        104 DSALMVIDAAKGVEPQTRKLMEVCRLRDTPIF-TFINKL  141 (526)
T ss_pred             CEEEEEEecCCCCCHHHHHHHHHHHhcCCCEE-EEEECC
Confidence            46677776654444567888999999999964 889999

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=91.24  E-value=4.5  Score=41.37  Aligned_cols=36  Identities=28%  Similarity=0.382  Sum_probs=26.2

Q ss_pred             hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      .|...+.++ -....+++|..|+||||+|..+|..+-
T Consensus        27 ~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~   63 (486)
T PRK14953         27 ILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN   63 (486)
T ss_pred             HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            344455432 234457799999999999999999875

>KOG2878 consensus Predicted kinase [General function prediction only]

Probab=91.23  E-value=0.23  Score=44.44  Aligned_cols=39  Identities=28%  Similarity=0.200  Sum_probs=34.2

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHC--C-CCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEV--R-PSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~--G-~rVLLiD~D   65 (365)
                      .+.++++||.-|+||||++.++-..+.+.  + +++.-++.|
T Consensus        30 ~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvD   71 (282)
T KOG2878|consen   30 VPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVD   71 (282)
T ss_pred             CcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEec
Confidence            35688999999999999999999999865  3 589999988

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=91.22  E-value=3.6  Score=41.58  Aligned_cols=39  Identities=10%  Similarity=-0.025  Sum_probs=29.4

Q ss_pred             eEEEEeecCCcch-------HHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLS-------LYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s-------~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|..+..-.       -..|++.+..+..+|++..-|++|+.
T Consensus       110 D~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKm  155 (446)
T PTZ00141        110 DVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKM  155 (446)
T ss_pred             CEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcc
Confidence            3556666654432       25889999999999998777899999

>PRK00625 shikimate kinase; Provisional

Probab=91.20  E-value=0.22  Score=43.56  Aligned_cols=30  Identities=33%  Similarity=0.464  Sum_probs=24.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++.|-.|+||||++-.+|..+   |.  -.+|+|
T Consensus         3 I~LiG~pGsGKTT~~k~La~~l---~~--~~id~D   32 (173)
T PRK00625          3 IFLCGLPTVGKTSFGKALAKFL---SL--PFFDTD   32 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---CC--CEEEhh
Confidence            6778999999999999998876   43  457877

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=91.19  E-value=0.21  Score=45.55  Aligned_cols=34  Identities=32%  Similarity=0.367  Sum_probs=24.1

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ..-+++.|.+|+||||+|.-+|..+   |.....+++
T Consensus        50 l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg   83 (233)
T PF05496_consen   50 LDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSG   83 (233)
T ss_dssp             --EEEEESSTTSSHHHHHHHHHHHC---T--EEEEEC
T ss_pred             cceEEEECCCccchhHHHHHHHhcc---CCCeEeccc
Confidence            3456888999999999999888865   455555555

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6

Probab=91.18  E-value=0.38  Score=49.17  Aligned_cols=51  Identities=20%  Similarity=0.139  Sum_probs=33.4

Q ss_pred             CCeEEEEEeC---CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhccc
Q 017873           26 DSLKWVFVGG---KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRF   78 (365)
Q Consensus        26 ~~~~i~~~sg---KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~   78 (365)
                      .++-|++++-   +-|+||||++..|+.+|++.|+++.+.=  .+||+.-+||.+-
T Consensus        53 ~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~~l--RePSlGP~fG~KG  106 (557)
T PF01268_consen   53 DGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIAAL--REPSLGPVFGIKG  106 (557)
T ss_dssp             --EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEEEE------CHHHHCST-
T ss_pred             CCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEEEE--ecCCCCCccCccc
Confidence            3455555543   7899999999999999999999887643  5678888898873

3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=91.14  E-value=0.24  Score=50.01  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=32.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD~D   65 (365)
                      .-+++.|..|+|||+++.++|..+.+.  +.+|+.++++
T Consensus       131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~  169 (440)
T PRK14088        131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE  169 (440)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence            347888999999999999999998864  6799999875

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA

Probab=91.13  E-value=0.3  Score=52.63  Aligned_cols=36  Identities=19%  Similarity=0.150  Sum_probs=32.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ++.++.|.+|+||||+...+...+...|++|.++-.
T Consensus       369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~Ap  404 (744)
T TIGR02768       369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAAL  404 (744)
T ss_pred             CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            578899999999999999998888888999998844

This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.

>PRK12739 elongation factor G; Reviewed

Probab=91.13  E-value=1.5  Score=46.82  Aligned_cols=37  Identities=14%  Similarity=0.119  Sum_probs=29.1

Q ss_pred             EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      .+++|.....-.-..+++++..+...|+|+. +++|+.
T Consensus        99 ~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~  135 (691)
T PRK12739         99 GAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKM  135 (691)
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECC
Confidence            5666666655445677899999999999986 899999

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=91.10  E-value=4.5  Score=39.19  Aligned_cols=36  Identities=17%  Similarity=0.237  Sum_probs=26.4

Q ss_pred             hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      ..+.++.++ ...-.+++|..|+||+|+|.++|.++-
T Consensus        11 ~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll   47 (328)
T PRK05707         11 LWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALL   47 (328)
T ss_pred             HHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence            344455442 233457789999999999999999986

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=91.10  E-value=0.21  Score=43.42  Aligned_cols=27  Identities=30%  Similarity=0.374  Sum_probs=22.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEV   55 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~   55 (365)
                      .++++.|..|+||||++-.|+..+...
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~   28 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGD   28 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcC
Confidence            367888999999999999998876433

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=91.08  E-value=0.27  Score=43.84  Aligned_cols=35  Identities=29%  Similarity=0.380  Sum_probs=25.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHH----CCCCEEEEeCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAE----VRPSVLIISTD   65 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~----~G~rVLLiD~D   65 (365)
                      +++.|..|+|||++..+++..++.    .+-++.++|.-
T Consensus        41 ~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k   79 (205)
T PF01580_consen   41 LLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK   79 (205)
T ss_dssp             EEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred             EEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence            467789999999999999999997    34455566654

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>PRK10436 hypothetical protein; Provisional

Probab=91.07  E-value=0.85  Score=46.28  Aligned_cols=43  Identities=23%  Similarity=0.264  Sum_probs=29.1

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEE
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII   62 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLi   62 (365)
                      +..++.. ..-+++++|..|+||||+-.++-..+...+.+++-|
T Consensus       210 l~~~~~~-~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~Ti  252 (462)
T PRK10436        210 FRQALQQ-PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSV  252 (462)
T ss_pred             HHHHHHh-cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEe
Confidence            4444433 456788899999999999877666665555555443

>PRK12735 elongation factor Tu; Reviewed

Probab=91.07  E-value=3.5  Score=40.91  Aligned_cols=39  Identities=8%  Similarity=0.009  Sum_probs=28.9

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|.....-....+.+.+..+...|++..-+++|+.
T Consensus       100 D~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~  138 (396)
T PRK12735        100 DGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKC  138 (396)
T ss_pred             CEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEec
Confidence            456666666554456777888888889988765679999

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=91.05  E-value=0.23  Score=46.10  Aligned_cols=27  Identities=30%  Similarity=0.342  Sum_probs=22.8

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      +..++++.|..|+||||++..++..+.
T Consensus        42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        42 REGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            355778899999999999999987765

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=91.05  E-value=0.33  Score=43.48  Aligned_cols=31  Identities=32%  Similarity=0.370  Sum_probs=25.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++.+.|.-|+||||++..|+.    .|.  .++|+|
T Consensus         2 ~~igitG~igsGKst~~~~l~~----~g~--~vid~D   32 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS----EGF--LIVDAD   32 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH----CCC--eEEeCc
Confidence            5678889999999999998873    576  579998

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=90.99  E-value=0.34  Score=43.60  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=26.7

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .+.++.++|.-|+||||++..|+..   .|..  ++|+|
T Consensus         5 ~~~~IglTG~iGsGKStv~~~l~~~---lg~~--vidaD   38 (204)
T PRK14733          5 NTYPIGITGGIASGKSTATRILKEK---LNLN--VVCAD   38 (204)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHH---cCCe--EEecc
Confidence            3456788899999999999888753   3665  68998

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=90.97  E-value=0.53  Score=51.04  Aligned_cols=57  Identities=23%  Similarity=0.279  Sum_probs=41.7

Q ss_pred             hhhhhcchhhHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHHH----CC---CCEEEEeCC
Q 017873            9 DQELEIPEGSVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLAE----VR---PSVLIISTD   65 (365)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la~----~G---~rVLLiD~D   65 (365)
                      +++++++..-|...+.+. +..+++++|+.|+|||+++..+...|..    .+   .+++-|.|-
T Consensus       761 EeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm  825 (1164)
T PTZ00112        761 EKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM  825 (1164)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence            466777777777777643 3467889999999999999999888752    22   345666663

>PRK00007 elongation factor G; Reviewed

Probab=90.97  E-value=1.6  Score=46.61  Aligned_cols=37  Identities=14%  Similarity=0.081  Sum_probs=30.7

Q ss_pred             EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      .+++|.....-...++++++..+...|+|+. +++|+.
T Consensus       101 ~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~  137 (693)
T PRK00007        101 GAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKM  137 (693)
T ss_pred             EEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECC
Confidence            5677776666666788999999999999986 999999

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=90.91  E-value=0.22  Score=43.97  Aligned_cols=25  Identities=28%  Similarity=0.221  Sum_probs=20.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      -.++++||..||||||+...|=...
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            3678999999999999998876544

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=90.91  E-value=0.13  Score=46.99  Aligned_cols=48  Identities=19%  Similarity=0.220  Sum_probs=36.1

Q ss_pred             hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .|..+...+.+.-+++||.+|+||||....||..|--..++=.++.++
T Consensus        38 rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN   85 (333)
T KOG0991|consen   38 RLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN   85 (333)
T ss_pred             HHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence            455566666677788899999999999999999886444555555554

>CHL00071 tufA elongation factor Tu

Probab=90.89  E-value=3.4  Score=41.22  Aligned_cols=39  Identities=8%  Similarity=0.023  Sum_probs=30.2

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|..+..-....+++.+..+...|+|..=+++|+.
T Consensus       100 D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~  138 (409)
T CHL00071        100 DGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKE  138 (409)
T ss_pred             CEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEcc
Confidence            366777766655567888899999999998555789999

>PRK10536 hypothetical protein; Provisional

Probab=90.87  E-value=0.55  Score=43.81  Aligned_cols=46  Identities=22%  Similarity=0.323  Sum_probs=32.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCCCChhhHhh
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPAHNLSDAFQ   75 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~~~l~~~~~   75 (365)
                      .++++.|..|+|||++|.++|..+- ...++.++| +.|.-+..+.+|
T Consensus        75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI-~RP~v~~ge~LG  121 (262)
T PRK10536         75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV-TRPVLQADEDLG  121 (262)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE-eCCCCCchhhhC
Confidence            4889999999999999999999654 444565555 344433344444

>PRK13975 thymidylate kinase; Provisional

Probab=90.79  E-value=0.28  Score=43.25  Aligned_cols=25  Identities=36%  Similarity=0.533  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      .++++.|-.|+||||++..||..+.
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5788889999999999999999884

>PRK13342 recombination factor protein RarA; Reviewed

Probab=90.78  E-value=0.3  Score=48.77  Aligned_cols=35  Identities=29%  Similarity=0.412  Sum_probs=26.9

Q ss_pred             hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      .|..++.+....-+++.|.+|+||||+|..+|..+
T Consensus        26 ~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~   60 (413)
T PRK13342         26 PLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT   60 (413)
T ss_pred             HHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            36666666555556678999999999999998754

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=90.78  E-value=0.56  Score=41.74  Aligned_cols=40  Identities=25%  Similarity=0.236  Sum_probs=35.1

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      +..+-+.|..|+|||++-..+-..|... +++.+|-.|...
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t   52 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYT   52 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeec
Confidence            3667888999999999999999999877 999999999543

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=90.74  E-value=6.4  Score=41.22  Aligned_cols=36  Identities=25%  Similarity=0.344  Sum_probs=26.6

Q ss_pred             hHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        18 ~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      .|+.++.++ -....+++|..|+||||+|..+|.++-
T Consensus        24 ~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~   60 (584)
T PRK14952         24 PLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN   60 (584)
T ss_pred             HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            355555543 233457889999999999999998775

>PRK04182 cytidylate kinase; Provisional

Probab=90.71  E-value=0.24  Score=42.85  Aligned_cols=31  Identities=29%  Similarity=0.365  Sum_probs=24.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++++|-.|+||||++..||..+   |.  -++|+|
T Consensus         2 ~I~i~G~~GsGKstia~~la~~l---g~--~~id~~   32 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKL---GL--KHVSAG   32 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc---CC--cEecHH
Confidence            57888999999999999998875   54  345643

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=90.61  E-value=0.78  Score=46.91  Aligned_cols=44  Identities=20%  Similarity=0.271  Sum_probs=29.7

Q ss_pred             hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEE
Q 017873           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII   62 (365)
Q Consensus        18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLi   62 (365)
                      .|..++.. +.-+++++|..|+||||+..++-..+...+.+++-+
T Consensus       233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTi  276 (486)
T TIGR02533       233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTV  276 (486)
T ss_pred             HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEE
Confidence            34445543 345788999999999999987766555445555444

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=90.60  E-value=0.43  Score=46.98  Aligned_cols=36  Identities=31%  Similarity=0.141  Sum_probs=31.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++-+.|..|+||||++..+...|..+ ++|.++..+
T Consensus         6 ~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~   41 (369)
T PRK14490          6 FEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKHG   41 (369)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEeC
Confidence            456667889999999999999999988 999999754

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=90.49  E-value=0.39  Score=43.67  Aligned_cols=37  Identities=22%  Similarity=0.292  Sum_probs=31.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH--CCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAE--VRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~--~G~rVLLiD~D   65 (365)
                      ..+|+.|..|+|||.+..+++..+.+  .+.+|+.++++
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~   73 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE   73 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH
Confidence            35788999999999999999999885  47899999986

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=90.44  E-value=4.5  Score=42.38  Aligned_cols=37  Identities=19%  Similarity=0.287  Sum_probs=27.2

Q ss_pred             HHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC
Q 017873           19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV   55 (365)
Q Consensus        19 l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~   55 (365)
                      |...+.+ +...-.+++|..|+||||+|..+|.++--.
T Consensus        28 L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~   65 (605)
T PRK05896         28 LVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL   65 (605)
T ss_pred             HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            4444433 334556788999999999999999998643

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=90.43  E-value=0.33  Score=42.29  Aligned_cols=32  Identities=28%  Similarity=0.384  Sum_probs=25.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .+++.|-.|+||||++..+|..+   |  .-++|+|.
T Consensus         6 ~I~liG~~GaGKStl~~~La~~l---~--~~~vd~D~   37 (172)
T PRK05057          6 NIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSDQ   37 (172)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHc---C--CcEEECCc
Confidence            46777999999999999999875   3  34678874

>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family

Probab=90.39  E-value=0.35  Score=52.58  Aligned_cols=45  Identities=22%  Similarity=0.357  Sum_probs=37.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhh
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQ   75 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~   75 (365)
                      .++.|+.|+||||+...+...+...|.+|.++|.+.. ..+...++
T Consensus       441 ~~I~G~sGsGKS~l~~~l~~~~~~~g~~vviiD~g~sy~~l~~~l~  486 (829)
T TIGR03783       441 KFILGPSGSGKSFFTNHLVRQYYEQGTHILLVDTGNSYQGLCELIH  486 (829)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhcCCEEEEECCCccHHHHHHHhh
Confidence            3778999999999999999999999999999998754 44556663

Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=90.37  E-value=0.31  Score=47.07  Aligned_cols=35  Identities=31%  Similarity=0.410  Sum_probs=26.2

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ...++++|..|+||||++..+|..+   |.++..++..
T Consensus        51 ~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~   85 (328)
T PRK00080         51 LDHVLLYGPPGLGKTTLANIIANEM---GVNIRITSGP   85 (328)
T ss_pred             CCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEecc
Confidence            4467788999999999999998876   4445545443

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=90.27  E-value=0.36  Score=44.69  Aligned_cols=33  Identities=27%  Similarity=0.247  Sum_probs=25.6

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      |.++.++|.-|+||||++.-|+..   .|.  -+||+|
T Consensus         1 M~iIGlTGgIgSGKStVs~~L~~~---~G~--~viDaD   33 (244)
T PTZ00451          1 MILIGLTGGIACGKSTVSRILREE---HHI--EVIDAD   33 (244)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH---cCC--eEEehH
Confidence            356788899999999998877643   365  559999

>TIGR03263 guanyl_kin guanylate kinase

Probab=90.25  E-value=0.25  Score=42.88  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +++++.|..|+||||++..|+..+
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccC
Confidence            467888999999999988888754

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK02496 adk adenylate kinase; Provisional

Probab=90.23  E-value=0.33  Score=42.53  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      ++ +++.|.+|+||||++..||..+
T Consensus         2 ~~-i~i~G~pGsGKst~a~~la~~~   25 (184)
T PRK02496          2 TR-LIFLGPPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             eE-EEEECCCCCCHHHHHHHHHHHh
Confidence            44 4556889999999999998876

>PRK14532 adenylate kinase; Provisional

Probab=90.22  E-value=0.25  Score=43.39  Aligned_cols=30  Identities=23%  Similarity=0.173  Sum_probs=23.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++.|.+|+||||+|..||..+   |  ...||.|
T Consensus         3 i~~~G~pGsGKsT~a~~la~~~---g--~~~is~~   32 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEER---G--MVQLSTG   32 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc---C--CeEEeCc
Confidence            5668999999999999998654   4  3556765

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=90.22  E-value=0.61  Score=42.14  Aligned_cols=37  Identities=27%  Similarity=0.357  Sum_probs=31.6

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ..++++-|-=|+||||.+..|+.+|..+|.+|++.=-
T Consensus         3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trE   39 (208)
T COG0125           3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTRE   39 (208)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            3566777889999999999999999999998877654

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=90.20  E-value=3.4  Score=44.73  Aligned_cols=37  Identities=16%  Similarity=0.131  Sum_probs=25.3

Q ss_pred             ceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          224 LTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       224 ~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      .+.+++|..+..  ......+..++.+.|+|+ -+++|+.
T Consensus        86 aD~vI~VvDat~--ler~l~l~~ql~e~giPv-IvVlNK~  122 (772)
T PRK09554         86 ADLLINVVDASN--LERNLYLTLQLLELGIPC-IVALNML  122 (772)
T ss_pred             CCEEEEEecCCc--chhhHHHHHHHHHcCCCE-EEEEEch
Confidence            356666766544  333445667788889887 4888999

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=90.16  E-value=0.33  Score=42.36  Aligned_cols=33  Identities=27%  Similarity=0.319  Sum_probs=26.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ++++.|..|+||||+|..++..+   |.+++.+++.
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~   35 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQS---GLQVLYIATA   35 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCC
Confidence            57888999999999999998653   5566666654

>TIGR00485 EF-Tu translation elongation factor TU

Probab=90.10  E-value=4.1  Score=40.39  Aligned_cols=39  Identities=8%  Similarity=0.008  Sum_probs=29.6

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|.....-....+.+.+..+...|++..-+++|+.
T Consensus       100 D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~  138 (394)
T TIGR00485       100 DGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKC  138 (394)
T ss_pred             CEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEec
Confidence            356667666554557788889999999988765689999

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00152 dephospho-CoA kinase

Probab=90.04  E-value=0.32  Score=42.83  Aligned_cols=31  Identities=26%  Similarity=0.272  Sum_probs=24.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++++|.-|+||||++..|+...   |.  -++|+|
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~---~~--~~i~~D   31 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKY---HF--PVIDAD   31 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhc---CC--eEEeCC
Confidence            46788999999999998777642   34  468998

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=90.00  E-value=0.39  Score=52.58  Aligned_cols=41  Identities=22%  Similarity=0.210  Sum_probs=32.9

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHH-------CCCCEEEEeCC
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAE-------VRPSVLIISTD   65 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~-------~G~rVLLiD~D   65 (365)
                      +..+.-+++-|.+|||||+++..+|..+..       +|++++.+|+.
T Consensus       196 r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~  243 (857)
T PRK10865        196 RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG  243 (857)
T ss_pred             cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehh
Confidence            344445566699999999999999999864       57889888887

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=89.99  E-value=0.29  Score=42.72  Aligned_cols=42  Identities=26%  Similarity=0.390  Sum_probs=32.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC------CCCChhhHhhcc
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD------PAHNLSDAFQQR   77 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D------~~~~l~~~~~~~   77 (365)
                      +|.-|--|+||||+.-.||..|..     =.+|+|      ...+++++|...
T Consensus         5 IvLiG~mGaGKSTIGr~LAk~L~~-----~F~D~D~~Ie~~~g~sI~eIF~~~   52 (172)
T COG0703           5 IVLIGFMGAGKSTIGRALAKALNL-----PFIDTDQEIEKRTGMSIAEIFEEE   52 (172)
T ss_pred             EEEEcCCCCCHhHHHHHHHHHcCC-----CcccchHHHHHHHCcCHHHHHHHH
Confidence            455688899999999999998753     478999      457777777643

>PRK13507 formate--tetrahydrofolate ligase; Provisional

Probab=89.97  E-value=0.43  Score=48.78  Aligned_cols=49  Identities=14%  Similarity=-0.062  Sum_probs=38.0

Q ss_pred             CeEEEEEe---CCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873           27 SLKWVFVG---GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (365)
Q Consensus        27 ~~~i~~~s---gKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~   77 (365)
                      ++.|++++   -.-|+||||++..|+.+|.+.|+++++.=  .++|+.=+||.+
T Consensus        63 gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~~~l--RePSlGP~FGiK  114 (587)
T PRK13507         63 GKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVSGAI--RQPSGGPTMNIK  114 (587)
T ss_pred             CeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceEEEE--ecCCcCCcCCcc
Confidence            45555444   37899999999999999999999887643  456777777766

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=89.93  E-value=1.1  Score=46.75  Aligned_cols=41  Identities=20%  Similarity=0.199  Sum_probs=27.5

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEE
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVL   60 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVL   60 (365)
                      +..++.. ..-+++++|..|+||||+-.++...+...+.+++
T Consensus       308 l~~~~~~-~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~  348 (564)
T TIGR02538       308 FLEAIHK-PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNIS  348 (564)
T ss_pred             HHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEE
Confidence            4444433 4567889999999999998776666544344433

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot)

Probab=89.85  E-value=0.32  Score=43.19  Aligned_cols=35  Identities=20%  Similarity=0.192  Sum_probs=21.3

Q ss_pred             EEEEeCCCCCcHHHHHHHH-HHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSIL-SILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~l-A~~la~~G~rVLLiD~D   65 (365)
                      |.++.|+.|+|||+.|+.. ....-+.|.+|.. ..+
T Consensus         2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~   37 (193)
T PF05707_consen    2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIP   37 (193)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---T
T ss_pred             EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccC
Confidence            5688999999999999998 6555567776665 554

Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.

>PLN03126 Elongation factor Tu; Provisional

Probab=89.85  E-value=4.9  Score=41.06  Aligned_cols=39  Identities=8%  Similarity=0.018  Sum_probs=30.2

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|.....-....+++.+..+...|++..-+++|+.
T Consensus       169 D~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~  207 (478)
T PLN03126        169 DGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQ  207 (478)
T ss_pred             CEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecc
Confidence            356667666555567888999999999998666789999

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=89.81  E-value=2.7  Score=41.32  Aligned_cols=67  Identities=16%  Similarity=0.178  Sum_probs=46.7

Q ss_pred             hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEeCCCCCChhhHhh
Q 017873            9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTDPAHNLSDAFQ   75 (365)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD~D~~~~l~~~~~   75 (365)
                      +++++++..-|...+.+..+.-+++-|+.|+|||+++-.++..+-..  +.-+.-|+|=.-++...++.
T Consensus        23 e~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~   91 (366)
T COG1474          23 EEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLS   91 (366)
T ss_pred             HHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHH
Confidence            45556666666666666555546667999999999999999999854  33378888876555544443

>PRK07429 phosphoribulokinase; Provisional

Probab=89.76  E-value=0.43  Score=46.23  Aligned_cols=38  Identities=39%  Similarity=0.371  Sum_probs=28.8

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ...++-+.|..|+||||++..++..+...  .+.++..|-
T Consensus         7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~--~~~vi~~Dd   44 (327)
T PRK07429          7 RPVLLGVAGDSGCGKTTFLRGLADLLGEE--LVTVICTDD   44 (327)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHhHhccC--ceEEEEecc
Confidence            44677888999999999999999777543  355666663

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=89.71  E-value=2.1  Score=43.48  Aligned_cols=43  Identities=23%  Similarity=0.275  Sum_probs=31.8

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEE
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII   62 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLi   62 (365)
                      +.+++. .+.-++.++|.-|+||||+=.++-..+....++++-|
T Consensus       250 ~~~~~~-~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti  292 (500)
T COG2804         250 LLRLLN-RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITI  292 (500)
T ss_pred             HHHHHh-CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEe
Confidence            444443 3567888999999999999998888887766664443

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=89.70  E-value=0.27  Score=42.53  Aligned_cols=23  Identities=30%  Similarity=0.303  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSIL   51 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~   51 (365)
                      +++++.|..||||||+.-+|.-.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            67788899999999998877654

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=89.69  E-value=15  Score=38.85  Aligned_cols=39  Identities=8%  Similarity=-0.055  Sum_probs=30.7

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|...+.-....+...+..+...|++..-||+|+.
T Consensus        76 D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKi  114 (614)
T PRK10512         76 DHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKA  114 (614)
T ss_pred             CEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECC
Confidence            456777776665667888888889999988666899999

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=89.69  E-value=0.47  Score=42.64  Aligned_cols=32  Identities=31%  Similarity=0.412  Sum_probs=24.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +.++-++|+.|+||||+|--++    +.|.  -+||+|
T Consensus         2 ~~iIglTG~igsGKStva~~~~----~~G~--~vidaD   33 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILA----ELGF--PVIDAD   33 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHH----HcCC--eEEEcc
Confidence            5677788999999999876554    4554  678998

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=89.66  E-value=0.61  Score=40.81  Aligned_cols=37  Identities=24%  Similarity=0.190  Sum_probs=31.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      +++++|==|+||||+--++.. ....|.|+.+|-.|..
T Consensus         2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g   38 (178)
T PF02492_consen    2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFG   38 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcccc
Confidence            567889999999999999998 6678999999999876

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK10646 ADP-binding protein; Provisional

Probab=89.64  E-value=0.44  Score=40.88  Aligned_cols=45  Identities=22%  Similarity=0.168  Sum_probs=34.7

Q ss_pred             hhhhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873            7 DQDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus         7 ~~~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      .+.++...+-..|-..+..  ..++...|-=|+||||++..++.+|.
T Consensus         9 ~s~~~t~~l~~~la~~l~~--g~vi~L~GdLGaGKTtf~rgl~~~Lg   53 (153)
T PRK10646          9 PDEQATLDLGARVAKACDG--ATVIYLYGDLGAGKTTFSRGFLQALG   53 (153)
T ss_pred             CCHHHHHHHHHHHHHhCCC--CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3455666666677766643  35788999999999999999999884

>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA

Probab=89.63  E-value=0.78  Score=43.12  Aligned_cols=44  Identities=18%  Similarity=0.135  Sum_probs=29.8

Q ss_pred             hhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCC----CCEEEEeCCC
Q 017873           22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVR----PSVLIISTDP   66 (365)
Q Consensus        22 ~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G----~rVLLiD~D~   66 (365)
                      ++......+++. |-.|+||||+.+.-...+...+    .++|++.+..
T Consensus         8 ~i~~~~~~~lV~-a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~   55 (315)
T PF00580_consen    8 IIRSTEGPLLVN-AGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTN   55 (315)
T ss_dssp             HHHS-SSEEEEE-E-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSH
T ss_pred             HHhCCCCCEEEE-eCCCCCchHHHHHHHHHhhccccCChHHheecccCH
Confidence            343322334444 4599999999988887777554    6899999873

THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....

>PRK13976 thymidylate kinase; Provisional

Probab=89.62  E-value=0.55  Score=42.42  Aligned_cols=37  Identities=30%  Similarity=0.555  Sum_probs=29.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHC-C-CCEEEEeCCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEV-R-PSVLIISTDPA   67 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~-G-~rVLLiD~D~~   67 (365)
                      ++++-|--|+||||.+..|+.+|... | ++|.+. ..|.
T Consensus         2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~-~eP~   40 (209)
T PRK13976          2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT-REPG   40 (209)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe-eCCC
Confidence            56788999999999999999999986 6 566544 4444

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=89.51  E-value=0.27  Score=46.37  Aligned_cols=34  Identities=32%  Similarity=0.397  Sum_probs=26.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      |+.+.|..|+||||++..|+..+...|  +.++.+|
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~D   34 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLD   34 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCc--eEEEECc
Confidence            356779999999999999998775443  5566666

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=89.49  E-value=0.35  Score=41.45  Aligned_cols=31  Identities=35%  Similarity=0.476  Sum_probs=24.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++++|-.|+||||++..+|..+   |..  ++|.|
T Consensus         2 iI~i~G~~GSGKstia~~la~~l---g~~--~~~~~   32 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKL---SLK--LISAG   32 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc---CCc--eecHH
Confidence            67889999999999999998764   554  56654

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	365
2woo_A	329	Nucleotide-Free Form Of S. Pombe Get3 Length = 329		7e-93
3ibg_A	348	Crystal Structure Of Aspergillus Fumigatus Get3 Wit		9e-88
3iqw_A	334	Amppnp Complex Of C. Therm. Get3 Length = 334		1e-82
3io3_A	348	Get3 With Adp From D. Hansenii In Closed Form Lengt		3e-73
3sja_A	362	Crystal Structure Of S. Cerevisiae Get3 In The Open		1e-69
3a36_A	362	Structural Insight Into The Membrane Insertion Of T		1e-69
3idq_A	369	Crystal Structure Of S. Cerevisiae Get3 At 3.7 Angs		2e-69
2woj_A	354	Adp-Alf4 Complex Of S. Cerevisiae Get3 Length = 354		2e-69
3vlc_A	354	Crystal Structure Of S. Cerevisiae Get3 In The Semi		2e-69
3zq6_A	324	Adp-Alf4 Complex Of M. Therm. Trc40 Length = 324		3e-47
3ug6_A	349	Crystal Structure Of Get3 From Methanocaldococcus J		7e-47
1f48_A	589	Crystal Structure Of The Escherichia Coli Arsenite-		5e-15

>pdb|2WOO|A Chain A, Nucleotide-Free Form Of S. Pombe Get3 Length = 329

Iteration: 1
 Score =  337 bits (864), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 169/322 (52%), Positives = 221/322 (68%), Gaps = 11/322 (3%)
Query: 17  GSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76
           G++ N+LEQ SLKW+F            S  L+I +++VR SVL+ISTDPAHNLSDAF  
Sbjct: 8   GTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGT 67
Query: 77  RFTKTPTLVNGFSNLYAMEVDP--SVEEET------GSTEGMDSLFSELANAIPGIDEAM 128
           +F K    V GF NL AME+DP  S++E T           +  +  +LA  IPGIDEA+
Sbjct: 68  KFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQADQQNPNNPLSGMMQDLAFTIPGIDEAL 127
Query: 129 SFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188
           +FAE+LK +++M++ C++FDTAPTGHTLR L FP+ LEK L K+  L ++FG MINQM  
Sbjct: 128 AFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMINQMGS 187
Query: 189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248
           + G++    E  L G++E M+  I  VNKQFK+PDLTTFVCVCI EFLSLYETER++QEL
Sbjct: 188 IMGVNA--NEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQEL 245
Query: 249 TKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEV 308
           T +EIDTHNI++NQ+L D      + + AR +MQQKYL Q   LY+DFH+ K+P +P EV
Sbjct: 246 TSYEIDTHNIVVNQLLLDPNTTCPQCM-ARRKMQQKYLAQIEELYEDFHVVKVPQVPAEV 304
Query: 309 TGIEALKAFSQHFVTPYQPSTS 330
            G EALK+FS+  V PY   TS
Sbjct: 305 RGTEALKSFSEMLVKPYVYPTS 326

>pdb|3IBG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound Adp Length = 348

Iteration: 1
 Score =  320 bits (819), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 163/325 (50%), Positives = 222/325 (68%), Gaps = 13/325 (4%)
Query: 16  EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
           E ++++IL Q +L+W+F            S  L+I LA+VR SVL+ISTDPAHNLSDAF 
Sbjct: 14  EPTLQSILSQKTLRWIFVGGKGGVGKTTTSCSLAIQLAKVRKSVLLISTDPAHNLSDAFG 73
Query: 76  QRFTKTPTLVNGFSNLYAMEVDP--SVEEETGSTE----------GMDSLFSELANAIPG 123
           Q+F K   LV+G+SNL AME+DP  S+++   S +          GM ++  +LA +IPG
Sbjct: 74  QKFGKEARLVDGYSNLSAMEIDPNGSIQDLLASGDSQGDDPLAGLGMGNMMQDLAFSIPG 133
Query: 124 IDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI 183
           +DEAMSFAE+LK V+++ Y  IVFDTAPTGHTLR LQFP+ LEK L K+  L ++FG M+
Sbjct: 134 VDEAMSFAEVLKQVKSLSYEVIVFDTAPTGHTLRFLQFPTVLEKALAKLSQLSSQFGPML 193
Query: 184 NQ-MTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE 242
           N  +    G+      D LL ++E +++ I  VN QFK+PD+TTFVCVCI EFLSLYETE
Sbjct: 194 NSILGARGGLPGGQNIDELLQKMESLRETISEVNTQFKNPDMTTFVCVCIAEFLSLYETE 253
Query: 243 RLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLP 302
           R++QELT + IDTH I++NQ+L+  E    +   AR +MQ+KYL+Q   LY+DF++ ++P
Sbjct: 254 RMIQELTSYGIDTHAIVVNQLLFPKEGSGCEQCNARRKMQKKYLEQIEELYEDFNVVRMP 313
Query: 303 LLPEEVTGIEALKAFSQHFVTPYQP 327
           LL EEV G E L+ FS+  V PY P
Sbjct: 314 LLVEEVRGKEKLEKFSEMLVHPYVP 338

>pdb|3IQW|A Chain A, Amppnp Complex Of C. Therm. Get3 Length = 334

Iteration: 1
 Score =  303 bits (776), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 160/323 (49%), Positives = 215/323 (66%), Gaps = 11/323 (3%)
Query: 16  EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
           E ++++IL+Q SL+W+F            S  L+I LA+VR SVL++STDPAHNLSDAF 
Sbjct: 4   EPTLQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFS 63
Query: 76  QRFTKTPTLVNGFSNLYAMEVDPS------VEEETGSTE---GMDSLFSELANAIPGIDE 126
           Q+F K   LV GF NLYAME+DP+      +  +TG  +   G   +  +LA AIPGIDE
Sbjct: 64  QKFGKEARLVEGFDNLYAMEIDPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGIDE 123
Query: 127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
           AMSFAE+LK V ++ Y  IVFDTAPTGHTLR LQFP+ LEK L K+  L  ++G ++N +
Sbjct: 124 AMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLEKALAKVSQLSGQYGSLLNGI 183
Query: 187 TRLFG-IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLV 245
               G + +      ++ +L+ ++  I  VN QFKD  LTTFVCVCIPEFLSLYETER++
Sbjct: 184 LGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMI 243
Query: 246 QELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYD-DFHITKLPLL 304
           QEL  + IDTH I++NQ+L+     + +   AR RMQ+KYLDQ   LYD +F++ K+PLL
Sbjct: 244 QELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPLL 303
Query: 305 PEEVTGIEALKAFSQHFVTPYQP 327
            EEV G E L+ FS+  + P+ P
Sbjct: 304 VEEVRGKERLEKFSEMLIKPFVP 326

>pdb|3IO3|A Chain A, Get3 With Adp From D. Hansenii In Closed Form Length = 348

Iteration: 1
 Score =  271 bits (694), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 147/350 (42%), Positives = 209/350 (59%), Gaps = 32/350 (9%)
Query: 16  EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
           E ++ +I++ DSLKW+F            SS +++ LA  +P+   L+ISTDPAHNLSDA
Sbjct: 6   EPTLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDA 65
Query: 74  FQQRFTKTPTLVNGFSNLYAMEVDP----------SVEEETGSTEGMDSLFSELANAIPG 123
           F Q+F K    V G  NL  ME+DP          + +      + + S+ S++  +IPG
Sbjct: 66  FCQKFGKDARKVEGLPNLSCMEIDPEAAMSDLQQQASQYNNDPNDPLKSMMSDMTGSIPG 125
Query: 124 IDEAMSFAEMLKLVQT------------MDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDK 171
           IDEA+SF E+LK ++             + Y  I+FDTAPTGHTLR LQ PSTLEK L K
Sbjct: 126 IDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTLRFLQLPSTLEKLLSK 185
Query: 172 MMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVC 231
              L  K G M++ M      D       +  +L  ++  +  VN+QF +P+LTTF+CVC
Sbjct: 186 FKDLSGKLGPMLSMMGGGQQQD-------IFEKLNEVQKNVSEVNEQFTNPELTTFICVC 238
Query: 232 IPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVES-KLLRARMRMQQKYLDQFY 290
           I EFLSLYETER++QEL  + +D ++I++NQ+L+ + D  S K   +R +MQ+KYLDQ  
Sbjct: 239 ISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMG 298
Query: 291 MLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTVEDLERR 340
            LY+D+H+ K+PLL  E+ G+E LK FS+  + PY P    D V DLE +
Sbjct: 299 ELYEDYHLVKMPLLGCEIRGVENLKKFSKFLLKPYDPKADSDIVFDLEEK 348

>pdb|3SJA|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State In Complex With Get1 Cytosolic Domain Length = 362

Iteration: 1
 Score =  259 bits (663), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 143/355 (40%), Positives = 204/355 (57%), Gaps = 37/355 (10%)
Query: 16  EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
           E ++ +++   + KW+F            S  ++I +A  +P+   L+ISTDPAHNLSDA
Sbjct: 6   EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74  FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
           F ++F K    V G +NL  ME+DPS                 GS    D L        
Sbjct: 66  FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
            ++L  +IPGIDEA+SF E++K ++  +      +  ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
            L+K   + NK G M+N       +D       + G+L  +K  +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVE--SKLLRARMRMQQKY 285
           VCVCI EFLSLYETERL+QEL  +++D ++II+NQ+L+ + D E   K  +AR +MQ+KY
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKY 298
Query: 286 LDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTVEDLERR 340
           LDQ   LY+DFH+ K+PL   E+ G+  L  FSQ     Y P T    + +LE +
Sbjct: 299 LDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELEDK 353

>pdb|3A36|A Chain A, Structural Insight Into The Membrane Insertion Of Tail- Anchored Proteins By Get3 Length = 362

Iteration: 1
 Score =  259 bits (663), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 143/355 (40%), Positives = 204/355 (57%), Gaps = 37/355 (10%)
Query: 16  EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
           E ++ +++   + KW+F            S  ++I +A  +P+   L+ISTDPAHNLSDA
Sbjct: 6   EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74  FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
           F ++F K    V G +NL  ME+DPS                 GS    D L        
Sbjct: 66  FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
            ++L  +IPGIDEA+SF E++K ++  +      +  ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQDEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
            L+K   + NK G M+N       +D       + G+L  +K  +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVE--SKLLRARMRMQQKY 285
           VCVCI EFLSLYETERL+QEL  +++D ++II+NQ+L+ + D E   K  +AR +MQ+KY
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKY 298
Query: 286 LDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTVEDLERR 340
           LDQ   LY+DFH+ K+PL   E+ G+  L  FSQ     Y P T    + +LE +
Sbjct: 299 LDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELEDK 353

>pdb|3IDQ|A Chain A, Crystal Structure Of S. Cerevisiae Get3 At 3.7 Angstrom Resolution Length = 369

Iteration: 1
 Score =  259 bits (662), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 143/355 (40%), Positives = 204/355 (57%), Gaps = 37/355 (10%)
Query: 16  EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
           E ++ +++   + KW+F            S  ++I +A  +P+   L+ISTDPAHNLSDA
Sbjct: 6   EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74  FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
           F ++F K    V G +NL  ME+DPS                 GS    D L        
Sbjct: 66  FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
            ++L  +IPGIDEA+SF E++K ++  +      +  ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
            L+K   + NK G M+N       +D       + G+L  +K  +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVE--SKLLRARMRMQQKY 285
           VCVCI EFLSLYETERL+QEL  +++D ++II+NQ+L+ + D E   K  +AR +MQ+KY
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKY 298
Query: 286 LDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTVEDLERR 340
           LDQ   LY+DFH+ K+PL   E+ G+  L  FSQ     Y P T    + +LE +
Sbjct: 299 LDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELEDK 353

>pdb|2WOJ|A Chain A, Adp-Alf4 Complex Of S. Cerevisiae Get3 Length = 354

Iteration: 1
 Score =  259 bits (662), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 143/355 (40%), Positives = 204/355 (57%), Gaps = 37/355 (10%)
Query: 16  EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
           E ++ +++   + KW+F            S  ++I +A  +P+   L+ISTDPAHNLSDA
Sbjct: 6   EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74  FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
           F ++F K    V G +NL  ME+DPS                 GS    D L        
Sbjct: 66  FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
            ++L  +IPGIDEA+SF E++K ++  +      +  ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
            L+K   + NK G M+N       +D       + G+L  +K  +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVE--SKLLRARMRMQQKY 285
           VCVCI EFLSLYETERL+QEL  +++D ++II+NQ+L+ + D E   K  +AR +MQ+KY
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKY 298
Query: 286 LDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTVEDLERR 340
           LDQ   LY+DFH+ K+PL   E+ G+  L  FSQ     Y P T    + +LE +
Sbjct: 299 LDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELEDK 353

>pdb|3VLC|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Semi Open Conformation In Complex With Get1 Cytosolic Domain At 4.5 Angstrom Resolution Length = 354

Iteration: 1
 Score =  259 bits (661), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 143/355 (40%), Positives = 204/355 (57%), Gaps = 37/355 (10%)
Query: 16  EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
           E ++ +++   + KW+F            S  ++I +A  +P+   L+ISTDPAHNLSDA
Sbjct: 6   EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74  FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
           F ++F K    V G +NL  ME+DPS                 GS    D L        
Sbjct: 66  FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
            ++L  +IPGIDEA+SF E++K ++  +      +  ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQDEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
            L+K   + NK G M+N       +D       + G+L  +K  +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVE--SKLLRARMRMQQKY 285
           VCVCI EFLSLYETERL+QEL  +++D ++II+NQ+L+ + D E   K  +AR +MQ+KY
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKY 298
Query: 286 LDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTVEDLERR 340
           LDQ   LY+DFH+ K+PL   E+ G+  L  FSQ     Y P T    + +LE +
Sbjct: 299 LDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELEDK 353

>pdb|3ZQ6|A Chain A, Adp-Alf4 Complex Of M. Therm. Trc40 Length = 324

Iteration: 1
 Score =  185 bits (470), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 106/297 (35%), Positives = 165/297 (55%), Gaps = 18/297 (6%)
Query: 45  SSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSV---- 100
           S+  ++ +A      L+ISTDPAH+LSD+ ++    TPT +    NLYA+E+DP V    
Sbjct: 31  SAATALWMARSGKKTLVISTDPAHSLSDSLEREIGHTPTKIT--ENLYAVEIDPEVAMEE 88
Query: 101 -----EEETGSTEGM--DSLFSEL--ANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAP 151
                +E+     GM  D L  ++  A+  PGIDEA +F + L+ + T +Y  ++FDTAP
Sbjct: 89  YQAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAP 148
Query: 152 TGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG-IDDEFGEDALLGRLEGMKD 210
           TGHTLRLL FP  ++  + KM+ ++ + G M      +   + DE  ED  L  +E  K 
Sbjct: 149 TGHTLRLLSFPEIMDSWVGKMIKIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKK 208
Query: 211 VIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDV 270
            I    +   DP+ T+F  V IPE +S+YE+ER ++ L K+ I    +I+NQVL ++ D 
Sbjct: 209 QINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDC 268
Query: 271 ESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQP 327
           E     AR ++QQ+ L Q    + D  + ++PLL +E  GIE L+  ++      +P
Sbjct: 269 E--FCNARRKLQQERLKQIREKFSDKVVAEVPLLKKEAKGIETLEKIAEQLYGEPEP 323

>pdb|3UG6|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus Jannaschii Length = 349

Iteration: 1
 Score =  184 bits (467), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 168/323 (52%), Gaps = 24/323 (7%)
Query: 18  SVRNILEQ-----DSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSD 72
           S+R I E+     D  K++             S+   + LAE    V+I+STDPAH+L D
Sbjct: 11  SLRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRD 70
Query: 73  AFQQRFTKTPTLVNGFSNLYAMEVDPS-------------VEEETGSTEGMDSLFSELAN 119
            F+Q F   PT V G+ NLY +E+DP              +EE     E ++    E+A 
Sbjct: 71  IFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQL-EMAA 129
Query: 120 AIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKF 179
             PG DE+ +F   LK + + ++  ++FDTAPTGHTLR L  P  ++K + K++ L+ + 
Sbjct: 130 LSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKLRKQM 189
Query: 180 GGMINQMTRLF---GIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFL 236
            G +  M +L    G D++   D +L  LE MK+ I R      DP+ T F  V IPE +
Sbjct: 190 SGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEM 249
Query: 237 SLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDF 296
           S+ E+ER ++ L K+ I    +I+NQ++   EDV+    RAR  +Q K L+     + D 
Sbjct: 250 SILESERAMKALQKYGIPIDAVIVNQLI--PEDVQCDFCRARRELQLKRLEMIKEKFGDK 307
Query: 297 HITKLPLLPEEVTGIEALKAFSQ 319
            I  +PLL  E  GIE LK  ++
Sbjct: 308 VIAYVPLLRTEAKGIETLKQIAK 330

>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-Translocating Atpase Length = 589

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 117/312 (37%), Gaps = 43/312 (13%)
Query: 45  SSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEET 104
           S   +I LAE    VL++STDPA N+   F Q    T   +     L A+E+DP    + 
Sbjct: 25  SCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQ 84
Query: 105 GSTEGMD------------SLFSELANA----IPGIDEAMSFAEMLKLVQTMDYSCIVFD 148
                +D            S+  +L+ A    I   DE         L+   D+  I+FD
Sbjct: 85  YRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDH--IIFD 142
Query: 149 TAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGM 208
           TAPTGHT+RLLQ P      +D      +  G M                      LE  
Sbjct: 143 TAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAG--------------------LEKQ 182
Query: 209 KDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDE 268
           ++      +   DP  T  V V   +  +L E  R   EL    +    ++IN VL   E
Sbjct: 183 REQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTE 242
Query: 269 DVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPS 328
                L  A    +Q+ L              L L P  + G+ AL   S+   T  QP 
Sbjct: 243 AANDTLAAAIWEREQEALANLPADLAGLPTDTLFLQPVNMVGVSAL---SRLLST--QPV 297
Query: 329 TSRDTVEDLERR 340
            S  + E L++R
Sbjct: 298 ASPSSDEYLQQR 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	1e-132
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	1e-121
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	1e-118
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	1e-118
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	1e-115
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	1e-112
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	7e-93
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	1e-79
3igf_A	374	ALL4481 protein; two-domained protein consisting o	6e-80
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	3e-08
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	6e-08
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	1e-07
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	2e-07
3cwq_A	209	Para family chromosome partitioning protein; alpha	2e-05
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	2e-04
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	4e-04
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	4e-04
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	6e-04
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	7e-04

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} Length = 329

 Score =  380 bits (977), Expect = e-132
 Identities = 177/327 (54%), Positives = 230/327 (70%), Gaps = 11/327 (3%)

Query: 12  LEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71
            +   G++ N+LEQ SLKW+FVGGKGGVGKTT S  L+I +++VR SVL+ISTDPAHNLS
Sbjct: 3   FDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLS 62

Query: 72  DAFQQRFTKTPTLVNGFSNLYAMEVDPSVE--------EETGSTEGMDSLFSELANAIPG 123
           DAF  +F K    V GF NL AME+DP++         ++      +  +  +LA  IPG
Sbjct: 63  DAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQADQQNPNNPLSGMMQDLAFTIPG 122

Query: 124 IDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI 183
           IDEA++FAE+LK +++M++ C++FDTAPTGHTLR L FP+ LEK L K+  L ++FG MI
Sbjct: 123 IDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMI 182

Query: 184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETER 243
           NQM  + G++    E  L G++E M+  I  VNKQFK+PDLTTFVCVCI EFLSLYETER
Sbjct: 183 NQMGSIMGVNAN--EQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETER 240

Query: 244 LVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPL 303
           ++QELT +EIDTHNI++NQ+L D          AR +MQQKYL Q   LY+DFH+ K+P 
Sbjct: 241 MIQELTSYEIDTHNIVVNQLLLDPNT-TCPQCMARRKMQQKYLAQIEELYEDFHVVKVPQ 299

Query: 304 LPEEVTGIEALKAFSQHFVTPYQPSTS 330
           +P EV G EALK+FS+  V PY   TS
Sbjct: 300 VPAEVRGTEALKSFSEMLVKPYVYPTS 326

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} Length = 348

 Score =  353 bits (908), Expect = e-121
 Identities = 157/351 (44%), Positives = 217/351 (61%), Gaps = 32/351 (9%)

Query: 15  PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRP--SVLIISTDPAHNLSD 72
            E ++ +I++ DSLKW+FVGGKGGVGKTT SS +++ LA  +P    L+ISTDPAHNLSD
Sbjct: 5   LEPTLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSD 64

Query: 73  AFQQRFTKTPTLVNGFSNLYAMEVDPSVEEE----------TGSTEGMDSLFSELANAIP 122
           AF Q+F K    V G  NL  ME+DP                   + + S+ S++  +IP
Sbjct: 65  AFCQKFGKDARKVEGLPNLSCMEIDPEAAMSDLQQQASQYNNDPNDPLKSMMSDMTGSIP 124

Query: 123 GIDEAMSFAEMLKLVQ------------TMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLD 170
           GIDEA+SF E+LK ++             + Y  I+FDTAPTGHTLR LQ PSTLEK L 
Sbjct: 125 GIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTLRFLQLPSTLEKLLS 184

Query: 171 KMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCV 230
           K   L  K G M++ M           +  +  +L  ++  +  VN+QF +P+LTTF+CV
Sbjct: 185 KFKDLSGKLGPMLSMMGGGQ-------QQDIFEKLNEVQKNVSEVNEQFTNPELTTFICV 237

Query: 231 CIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVES-KLLRARMRMQQKYLDQF 289
           CI EFLSLYETER++QEL  + +D ++I++NQ+L+ + D  S K   +R +MQ+KYLDQ 
Sbjct: 238 CISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQM 297

Query: 290 YMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTVEDLERR 340
             LY+D+H+ K+PLL  E+ G+E LK FS+  + PY P    D V DLE +
Sbjct: 298 GELYEDYHLVKMPLLGCEIRGVENLKKFSKFLLKPYDPKADSDIVFDLEEK 348

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A* Length = 354

 Score =  345 bits (886), Expect = e-118
 Identities = 150/356 (42%), Positives = 211/356 (59%), Gaps = 37/356 (10%)

Query: 15  PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRP--SVLIISTDPAHNLSD 72
            E ++ +++   + KW+FVGGKGGVGKTT S  ++I +A  +P    L+ISTDPAHNLSD
Sbjct: 5   VEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSD 64

Query: 73  AFQQRFTKTPTLVNGFSNLYAMEVDPSVE--------------------EETGSTEGMDS 112
           AF ++F K    V G +NL  ME+DPS                       +   +     
Sbjct: 65  AFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGG 124

Query: 113 LFSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLE 166
             ++L  +IPGIDEA+SF E++K ++  +      +  ++FDTAPTGHTLR LQ P+TL 
Sbjct: 125 ALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLS 184

Query: 167 KGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTT 226
           K L+K   + NK G M+N            G   + G+L  +K  +E + +QF DPDLTT
Sbjct: 185 KLLEKFGEITNKLGPMLNSFMGA-------GNVDISGKLNELKANVETIRQQFTDPDLTT 237

Query: 227 FVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVES--KLLRARMRMQQK 284
           FVCVCI EFLSLYETERL+QEL  +++D ++II+NQ+L+ + D E   K  +AR +MQ+K
Sbjct: 238 FVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKK 297

Query: 285 YLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPSTSRDTVEDLERR 340
           YLDQ   LY+DFH+ K+PL   E+ G+  L  FSQ     Y P T    + +LE +
Sbjct: 298 YLDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELEDK 353

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* Length = 334

 Score =  344 bits (883), Expect = e-118
 Identities = 169/325 (52%), Positives = 222/325 (68%), Gaps = 11/325 (3%)

Query: 15  PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF 74
            E ++++IL+Q SL+W+FVGGKGGVGKTT S  L+I LA+VR SVL++STDPAHNLSDAF
Sbjct: 3   MEPTLQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAF 62

Query: 75  QQRFTKTPTLVNGFSNLYAMEVDP---------SVEEETGSTEGMDSLFSELANAIPGID 125
            Q+F K   LV GF NLYAME+DP             +  +  G   +  +LA AIPGID
Sbjct: 63  SQKFGKEARLVEGFDNLYAMEIDPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGID 122

Query: 126 EAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQ 185
           EAMSFAE+LK V ++ Y  IVFDTAPTGHTLR LQFP+ LEK L K+  L  ++G ++N 
Sbjct: 123 EAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLEKALAKVSQLSGQYGSLLNG 182

Query: 186 MTRLFG-IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERL 244
           +    G + +      ++ +L+ ++  I  VN QFKD  LTTFVCVCIPEFLSLYETER+
Sbjct: 183 ILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERM 242

Query: 245 VQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYD-DFHITKLPL 303
           +QEL  + IDTH I++NQ+L+     + +   AR RMQ+KYLDQ   LYD +F++ K+PL
Sbjct: 243 IQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPL 302

Query: 304 LPEEVTGIEALKAFSQHFVTPYQPS 328
           L EEV G E L+ FS+  + P+ P 
Sbjct: 303 LVEEVRGKERLEKFSEMLIKPFVPP 327

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* Length = 349

 Score =  336 bits (863), Expect = e-115
 Identities = 120/336 (35%), Positives = 174/336 (51%), Gaps = 18/336 (5%)

Query: 9   DQELEIPEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67
              +    G     LE+ D  K++  GGKGGVGKTT S+   + LAE    V+I+STDPA
Sbjct: 6   KDSINSLRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65

Query: 68  HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSLFS 115
           H+L D F+Q F   PT V G+ NLY +E+DP               EE      M     
Sbjct: 66  HSLRDIFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQL 125

Query: 116 ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSL 175
           E+A   PG DE+ +F   LK + + ++  ++FDTAPTGHTLR L  P  ++K + K++ L
Sbjct: 126 EMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKL 185

Query: 176 KNKFGGMINQMTRLFGI---DDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCI 232
           + +  G +  M +L      D++   D +L  LE MK+ I R      DP+ T F  V I
Sbjct: 186 RKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVI 245

Query: 233 PEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYML 292
           PE +S+ E+ER ++ L K+ I    +I+NQ++   EDV+    RAR  +Q K L+     
Sbjct: 246 PEEMSILESERAMKALQKYGIPIDAVIVNQLI--PEDVQCDFCRARRELQLKRLEMIKEK 303

Query: 293 YDDFHITKLPLLPEEVTGIEALKAFSQHFVTPYQPS 328
           + D  I  +PLL  E  GIE LK  ++      +  
Sbjct: 304 FGDKVIAYVPLLRTEAKGIETLKQIAKILYGEEEKE 339

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 324

 Score =  329 bits (845), Expect = e-112
 Identities = 116/319 (36%), Positives = 176/319 (55%), Gaps = 18/319 (5%)

Query: 23  LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTP 82
             +    +VF+GGKGGVGKTT S+  ++ +A      L+ISTDPAH+LSD+ ++    TP
Sbjct: 9   FNKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSLEREIGHTP 68

Query: 83  TLVNGFSNLYAMEVDPSVEEE-------------TGSTEGMDSLFSELANAIPGIDEAMS 129
           T +    NLYA+E+DP V  E              G    M     ++A+  PGIDEA +
Sbjct: 69  TKITE--NLYAVEIDPEVAMEEYQAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAA 126

Query: 130 FAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRL 189
           F + L+ + T +Y  ++FDTAPTGHTLRLL FP  ++  + KM+ ++ + G M      +
Sbjct: 127 FDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWVGKMIKIRRQIGSMAKAFKNI 186

Query: 190 FG-IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248
              + DE  ED  L  +E  K  I    +   DP+ T+F  V IPE +S+YE+ER ++ L
Sbjct: 187 LPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKAL 246

Query: 249 TKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEV 308
            K+ I    +I+NQVL ++ D E     AR ++QQ+ L Q    + D  + ++PLL +E 
Sbjct: 247 EKYSIHADGVIVNQVLPEESDCE--FCNARRKLQQERLKQIREKFSDKVVAEVPLLKKEA 304

Query: 309 TGIEALKAFSQHFVTPYQP 327
            GIE L+  ++      +P
Sbjct: 305 KGIETLEKIAEQLYGEPEP 323

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* Length = 589

 Score =  288 bits (738), Expect = 7e-93
 Identities = 89/349 (25%), Positives = 126/349 (36%), Gaps = 38/349 (10%)

Query: 23  LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTP 82
             Q+   ++F  GKGGVGKT+ S   +I LAE    VL++STDPA N+   F Q    T 
Sbjct: 3   FLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTI 62

Query: 83  TLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSLFSELANA----IPGIDE 126
             +     L A+E+DP               +     + + S+  +L+ A    I   DE
Sbjct: 63  QAIASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDE 122

Query: 127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
                    L+   D+  I+FDTAPTGHT+RLLQ P      +D      +  G M    
Sbjct: 123 FTGLLTDASLLTRFDH--IIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPM---- 176

Query: 187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246
                             LE  ++      +   DP  T  V V   +  +L E  R   
Sbjct: 177 ----------------AGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHL 220

Query: 247 ELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPE 306
           EL    +    ++IN VL   E     L  A    +Q+ L              L L P 
Sbjct: 221 ELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLPADLAGLPTDTLFLQPV 280

Query: 307 EVTGIEALKAFSQHFVTPYQPSTSRDTVEDLERRVSTLRQQLQEAEAEL 355
            + G+ AL             S            +S L   +   E  L
Sbjct: 281 NMVGVSALSRLLSTQPVASPSSDEYLQQRPDIPSLSALVDDIARNEHGL 329

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* Length = 589

 Score =  254 bits (649), Expect = 1e-79
 Identities = 73/330 (22%), Positives = 124/330 (37%), Gaps = 55/330 (16%)

Query: 1   MTEEDQDQDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVL 60
            + ++  Q +       ++ + + ++    + + GKGGVGKTT ++ +++ LA++   V 
Sbjct: 300 PSSDEYLQQRPDIPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVH 359

Query: 61  IISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEE----------TGSTEGM 110
           + ++DPA +LS                 +NL    +DP  E E              +  
Sbjct: 360 LTTSDPAAHLSMTLNGSL----------NNLQVSRIDPHEETERYRQHVLETKGKELDEA 409

Query: 111 DSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLD 170
                E     P  +E   F    ++++      +V DTAPTGHTL LL       + + 
Sbjct: 410 GKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIA 469

Query: 171 KMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCV 230
           K M  K  F                                        +DP+ T  + V
Sbjct: 470 KKMGEKGHF---------------------------------TTPMMLLQDPERTKVLLV 496

Query: 231 CIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFY 290
            +PE   + E   L  +L +  I     IIN  L    D  S LLR R + +   ++   
Sbjct: 497 TLPETTPVLEAANLQADLERAGIHPWGWIINNSLS-IADTRSPLLRMRAQQELPQIESVK 555

Query: 291 MLYDDFHITKLPLLPEEVTGIEALKAFSQH 320
             +    +  +P+L  E TGI+ LK  + H
Sbjct: 556 RQHAS-RVALVPVLASEPTGIDKLKQLAGH 584

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Length = 374

 Score =  248 bits (635), Expect = 6e-80
 Identities = 49/330 (14%), Positives = 100/330 (30%), Gaps = 46/330 (13%)

Query: 31  VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS-TDPAHNLSDAFQQRFTKTPTLVNGFS 89
           +   GK GV +T  +   + LLA     VL+    +P        +Q  T  P  +    
Sbjct: 5   LTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGLAEPVL--PLLLEQTLTPDPQQIAP-- 60

Query: 90  NLYAMEVDPSVE------------EETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLV 137
           NL  ++   SV              +   T  +  ++ +    +PG+D A++   + +  
Sbjct: 61  NLEVVQFQSSVLLERNWEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYD 120

Query: 138 QTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG------ 191
            +  Y  IV+D      TLR+L  P +L   + +   L                      
Sbjct: 121 ASGKYDTIVYDGTGDAFTLRMLGLPESLSWYVRRFRQLFVNSDLGKTIAESPLIQPLISS 180

Query: 192 -IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK 250
             +  +  D        + + +++  +   DP       V   + L +     L     +
Sbjct: 181 FFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLEVVSVRYLWGSAQQ 240

Query: 251 FEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTG 310
             +    +I      + +                        +    +T +P + +    
Sbjct: 241 IGLTIGGVIQVSSQTEGDLSAE--------------------FTPLSVTVVPDVTKGDWQ 280

Query: 311 --IEALKAFSQHFVTPYQPSTSRDTVEDLE 338
             I+AL  F +      +P T       + 
Sbjct: 281 PLIDALPNFVEQAEQAPKPITIDTHNRQVR 310

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 88.0 bits (217), Expect = 4e-19
 Identities = 55/374 (14%), Positives = 108/374 (28%), Gaps = 102/374 (27%)

Query: 18  SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD-AFQ 75
            +R  L +    K V + G  G GKT        +  +V                    Q
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTW-------VALDV--------------CLSYKVQ 177

Query: 76  QRF------------TKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPG 123
            +                 T++     L   ++DP+    +  +  +      +   +  
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 124 IDEAMSFAEML---------KLVQTMDYSC---------IVFDTAPTGHT--LRLLQFPS 163
           + ++  +   L         K     + SC          V D      T  + L     
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 164 TLEKGLDKMMSLKNKFGGMINQM-------TRLFGIDDEFGEDALLGRLEGMKDVIERVN 216
           TL    D++ SL  K+     Q        T    +       +++     ++D +   +
Sbjct: 297 TLTP--DEVKSLLLKYLDCRPQDLPREVLTTNPRRL-------SIIAES--IRDGLATWD 345

Query: 217 --KQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL---------Y 265
             K      LTT +   +   L   E  ++   L+ F    H  I   +L          
Sbjct: 346 NWKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPSAH--IPTILLSLIWFDVIKS 402

Query: 266 DDEDVESKLLRARM--RMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFVT 323
           D   V +KL +  +  +  ++       +Y +  +            +E   A  +  V 
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK-----------LENEYALHRSIVD 451

Query: 324 PYQPSTSRDTVEDL 337
            Y    + D+ +DL
Sbjct: 452 HYNIPKTFDS-DDL 464

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 38/188 (20%), Positives = 57/188 (30%), Gaps = 54/188 (28%)

Query: 192 IDDEFGEDALLGRLEGMKDVIERVNKQF-KDPDLTTFVCVCIPEFLSLYETERLVQELTK 250
           +D E GE          KD++      F  + D     C  + +        + +  L+K
Sbjct: 7   MDFETGEHQY-----QYKDILSVFEDAFVDNFD-----CKDVQDMP------KSI--LSK 48

Query: 251 FEIDTHNIIINQVLYDDEDVESKLLRARMRMQQK---------YLDQFY-MLYDDFHI-T 299
            EID    II      D    +  L   +  +Q+          L   Y  L        
Sbjct: 49  EEID---HIIMS---KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102

Query: 300 KLPLLPEE--VTGIEALKAFSQHFVTPYQPSTSRDTVEDLERRVSTLRQQLQEAEAELER 357
           + P +     +   + L   +Q F   Y    SR       +    LRQ L E       
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVF-AKYN--VSR------LQPYLKLRQALLE------- 146

Query: 358 LRKGKQVA 365
           LR  K V 
Sbjct: 147 LRPAKNVL 154

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} Length = 245

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 31/226 (13%), Positives = 70/226 (30%), Gaps = 52/226 (23%)

Query: 31  VFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTD--------------PAHNLSDAFQ 75
            FV  KGG G +  ++  +  L++     VL +                  + +L+D   
Sbjct: 8   GFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISN 67

Query: 76  QRFTKTPTLVNGF-----SNLYAMEVDPSVEEETG-STEGMDSLFSELANAIP------- 122
                  +L++        +L  +    + E+      E +  L    A+          
Sbjct: 68  ASDRLDKSLLDTMVQHISPSLDLIPSPATFEKIVNIEPERVSDLIHIAASFYDYIIVDFG 127

Query: 123 -GIDE----AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKN 177
             ID      +   + L +V T     +           +LL+     EK + ++  + N
Sbjct: 128 ASIDHVGVWVLEHLDELCIVTTPSLQSLR-------RAGQLLKLCKEFEKPISRIEIILN 180

Query: 178 KF--GGMIN--QMTRLFGIDDEFGEDALLGRL-EGMKDVIERVNKQ 218
           +      I   ++ ++ G         +  R+ +    + E +   
Sbjct: 181 RADTNSRITSDEIEKVIGRP-------ISKRIPQDEDAMQESLLSG 219

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* Length = 254

 Score = 52.1 bits (125), Expect = 6e-08
 Identities = 39/244 (15%), Positives = 72/244 (29%), Gaps = 52/244 (21%)

Query: 35  GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAM 94
           GKGGVGKTT ++ L  ++A     +  +  DP   L                G S   A 
Sbjct: 7   GKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTL------------GLSIEEAY 54

Query: 95  EVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGH 154
            + P +E +                    I E      +L L   +D   +         
Sbjct: 55  AITPLIEMK------------------DEIREKTGDGGLLILNPKVDGD-LDKYGRYIDD 95

Query: 155 TLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG----IDDEFGEDALLGRLEGMKD 210
            + L++     + G        +  G +++ +         +D   G + L        D
Sbjct: 96  KIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLTRGTAKAVD 155

Query: 211 VIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDV 270
           ++               + V  P   S+     + +      I     +IN+V   +   
Sbjct: 156 MM---------------IAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKV--RNIKE 198

Query: 271 ESKL 274
           E  +
Sbjct: 199 EKLI 202

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} Length = 373

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 31  VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSN 90
           +F    GGVG +T ++  +I  A +   V  ++ +        FQ       T+ +   +
Sbjct: 147 IFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGNA--TMSDVIYS 204

Query: 91  LYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTM----DYSCIV 146
           L + + +  ++ E+   +  + +    +  +      +S+A++  L+  +    +Y  I+
Sbjct: 205 LKSRKANLLLKLESCIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQGMDNYDEII 264

Query: 147 FDTAP 151
            D   
Sbjct: 265 VDLPF 269

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Length = 206

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLV 85
           F+  KGG GKTT    ++  L+    ++ ++ TDP  +L++  +          
Sbjct: 5  SFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFT 59

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} Length = 209

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77
               KGGVGKTT +  LS  LA      L+I  DP  + +   ++ 
Sbjct: 4  TVASFKGGVGKTTTAVHLSAYLALQGE-TLLIDGDPNRSATGWGKRG 49

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 Length = 263

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 15/100 (15%)

Query: 35  GKGGVGKTTCSSILSILLAEVRPSVLIISTD--------------PAHNLSDAFQQRFTK 80
           GKGG GKTT ++ L + LA++   V I+  D                  L +        
Sbjct: 10  GKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARI 69

Query: 81  TPTLVNGFSNLYAMEVDPSVEEETG-STEGMDSLFSELAN 119
              +  G   +  +    S+E     + E ++ + +++  
Sbjct: 70  DEAIYVGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQIME 109

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* Length = 260

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 30/141 (21%)

Query: 35  GKGGVGKTTCSSILSILLAEVRPSVLIISTD---------------PAHNLSDAFQQRFT 79
           GKGGVGKTT S+ ++  LA+     ++I                    ++  +  Q   T
Sbjct: 10  GKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDAT 69

Query: 80  KTPTLVNG--FSNLYAMEVDPSVEEETGSTEGMDSLFSELANAI---------PGIDE-- 126
               L+      NLY +    + +++  + EG+  +  +L              GI+   
Sbjct: 70  LNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGA 129

Query: 127 --AMSFAEMLKLVQTMDYSCI 145
             A+ FA+   +    + S +
Sbjct: 130 LMALYFADEAIITTNPEVSSV 150

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* Length = 237

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTD-PAHNLS 71
          GKGG GKTT ++ LS+ L +    VL +  D    NLS
Sbjct: 10 GKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLS 47

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} Length = 298

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71
          KGGVGK+  S++ + L  ++   VL+I  D    L+
Sbjct: 45 KGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLT 80

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A Length = 267

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
          KGGVGK+T + IL+ LL++    VL+I  D 
Sbjct: 36 KGGVGKSTSAIILATLLSKNN-KVLLIDMDT 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	100.0
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	100.0
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	100.0
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	100.0
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	100.0
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	100.0
3igf_A	374	ALL4481 protein; two-domained protein consisting o	100.0
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	100.0
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	99.98
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	99.92
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	99.9
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	99.9
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	99.88
3end_A	307	Light-independent protochlorophyllide reductase ir	99.88
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	99.87
3fwy_A	314	Light-independent protochlorophyllide reductase I	99.86
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	99.86
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	99.86
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	99.86
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	99.86
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	99.85
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	99.85
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	99.84
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	99.84
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	99.84
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	99.83
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	99.82
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	99.81
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	99.81
3cwq_A	209	Para family chromosome partitioning protein; alpha	99.78
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	99.77
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	99.76
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	99.72
2xxa_A	433	Signal recognition particle protein; protein trans	99.52
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	99.42
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	99.38
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.35
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.33
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	99.32
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	99.31
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	99.27
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.21
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	99.15
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	99.13
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	99.12
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	99.08
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.08
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	99.04
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.0
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.82
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.27
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	98.16
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.09
1u94_A	356	RECA protein, recombinase A; homologous recombinat	98.04
3pzx_A	557	Formate--tetrahydrofolate ligase; HET: TOE; 2.20A	97.92
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.9
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.88
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.78
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.68
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.62
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.61
2obn_A	349	Hypothetical protein; structural genomics, joint c	97.57
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	97.54
3io5_A	333	Recombination and repair protein; storage dimer, i	97.48
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.47
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.45
2og2_A	359	Putative signal recognition particle receptor; nuc	97.37
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.3
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.3
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.29
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.23
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.22
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.16
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.15
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.05
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.99
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.97
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.97
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.88
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.86
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.79
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.78
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.75
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.75
3bos_A	242	Putative DNA replication factor; P-loop containing	96.69
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.67
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.64
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.63
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.58
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.58
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	96.56
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.51
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	96.47
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.46
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.45
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.45
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.34
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.26
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.25
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.25
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.21
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.17
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.17
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.14
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.14
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.08
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.08
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.04
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.02
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.99
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.99
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	95.98
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.97
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	95.92
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.91
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.84
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.83
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.77
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.75
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	95.71
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.7
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.7
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.68
2qgz_A	308	Helicase loader, putative primosome component; str	95.66
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.58
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.57
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.49
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	95.44
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.33
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.31
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.31
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.29
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.27
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.27
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.25
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.16
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	95.15
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.13
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.08
2vo1_A	295	CTP synthase 1; pyrimidine biosynthesis, glutamine	95.04
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.01
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.0
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.95
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	94.95
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	94.9
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	94.85
2c5m_A	294	CTP synthase; cytidine 5-prime triphosphate synthe	94.84
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	94.83
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.82
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.8
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	94.67
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	94.65
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	94.64
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	94.62
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	94.6
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	94.59
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	94.5
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.47
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	94.46
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.44
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	94.43
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	94.37
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	94.36
2g0t_A	350	Conserved hypothetical protein; structural genomic	94.34
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	94.33
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	94.31
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	94.27
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	94.26
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	94.25
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	94.24
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.23
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	94.1
3bs4_A	260	Uncharacterized protein PH0321; structural genomic	94.1
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	94.06
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	94.05
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	94.03
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	93.99
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	93.97
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	93.97
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	93.97
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	93.94
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	93.93
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	93.93
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	93.9
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	93.86
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	93.86
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	93.83
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	93.78
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	93.76
1via_A	175	Shikimate kinase; structural genomics, transferase	93.76
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	93.74
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	93.74
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	93.74
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	93.67
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	93.63
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	93.62
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	93.61
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	93.6
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	93.59
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	93.53
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	93.52
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	93.4
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	93.36
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	93.32
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	93.29
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	93.28
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	93.26
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	93.18
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	93.15
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	93.05
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	93.02
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	92.88
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	92.88
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	92.86
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	92.85
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	92.82
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	92.81
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	92.78
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	92.75
2vli_A	183	Antibiotic resistance protein; transferase, tunica	92.7
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	92.64
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	92.6
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	92.6
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	92.57
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	92.57
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	92.48
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	92.25
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	92.24
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	92.21
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	92.19
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	92.19
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	92.16
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	92.15
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	92.14
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	92.12
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	92.08
3do6_A	543	Formate--tetrahydrofolate ligase; TM1766, putative	92.07
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	92.05
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	92.04
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	91.92
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	91.91
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	91.87
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	91.86
2fna_A	357	Conserved hypothetical protein; structural genomic	91.82
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	91.8
1tue_A	212	Replication protein E1; helicase, replication, E1E	91.79
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	91.67
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	91.65
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	91.53
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	91.52
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	91.47
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	91.4
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	91.36
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	91.26
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	91.26
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	91.26
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	91.24
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	91.21
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	91.18
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	91.18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	91.15
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	91.09
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	91.05
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	90.75
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	90.59
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	90.52
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	90.45
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	90.4
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	90.31
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	90.23
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	90.22
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	90.17
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	90.11
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	90.1
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	90.0
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	89.91
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	89.9
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	89.81
2r44_A	331	Uncharacterized protein; putative ATPase, structur	89.75
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	89.67
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	89.61
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	89.55
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	89.49
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	89.46
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	89.45
3co5_A	143	Putative two-component system transcriptional RES	89.38
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	89.36
2eyu_A	261	Twitching motility protein PILT; pilus retraction	89.31
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	89.2
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	89.19
2l8b_A	189	Protein TRAI, DNA helicase I; RECD, hydrolase; NMR	89.14
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	89.13
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	89.12
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	89.06
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	88.98
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	88.84
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	88.75
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	88.67
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	88.64
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	88.27
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	88.25
2chq_A	319	Replication factor C small subunit; DNA-binding pr	88.25
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	88.22
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	88.19
2ewv_A	372	Twitching motility protein PILT; pilus retraction	88.17
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	88.11
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	88.1
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	88.04
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	87.98
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	87.94
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	87.93
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	87.8
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	87.78
1p9r_A	418	General secretion pathway protein E; bacterial typ	87.72
2ged_A	193	SR-beta, signal recognition particle receptor beta	87.67
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	87.44
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	87.31
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	87.14
3pvs_A	447	Replication-associated recombination protein A; ma	87.02
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	86.98
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	86.77
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	86.71
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	86.67
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	86.52
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	86.33
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	86.18
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	85.99
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	85.74
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	85.66
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	85.62
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	85.58
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	85.52
3lfu_A	647	DNA helicase II; SF1 helicase, ATP-binding, DNA da	85.48
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	85.26
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	84.67
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	84.47
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	84.39
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	84.33
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	84.24
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	84.14
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	84.12
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	84.05
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	83.96
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	83.96
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	83.83
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	83.74
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	83.65
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	83.37
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	83.1
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	83.04
3kta_A	182	Chromosome segregation protein SMC; structural mai	82.9
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	82.74
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	82.61
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	82.56
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	82.53
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	82.35
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	82.3
3rsc_A	415	CALG2; TDP, enediyne, structural genomics, PSI-2,	82.27
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	82.23
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	82.07
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	82.04
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	82.03
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	81.95
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	81.94
4ehx_A	315	Tetraacyldisaccharide 4'-kinase; membrane protein,	81.75
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	81.75
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	81.73
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	81.46
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	81.35
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	81.07
3oti_A	398	CALG3; calicheamicin, TDP, structural genomics, PS	80.96
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	80.9
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	80.88
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	80.71
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	80.51
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	80.43
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	80.31
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	80.21
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	80.18
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	80.06

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=100.00  E-value=3.5e-55  Score=421.51  Aligned_cols=315  Identities=54%  Similarity=0.879  Sum_probs=246.8

Q ss_pred             cchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCcee
Q 017873           14 IPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYA   93 (365)
Q Consensus        14 ~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~   93 (365)
                      .++++|+.++++++++|+|+||||||||||+|+|+|.++|+.|+||+|||+||+++++++|+.+.+..++.+.+.+|+++
T Consensus         2 ~l~~~l~~~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~~l~~~l~~~~~~~~~~v~~~~~L~~   81 (334)
T 3iqw_A            2 SMEPTLQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKFGKEARLVEGFDNLYA   81 (334)
T ss_dssp             CCCSSSHHHHHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSCHHHHHHTSCCCSSCEECTTCSSEEE
T ss_pred             CccccHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCCChhHHhccccCCCceeecCCCCcee
Confidence            47899999999999999999999999999999999999999999999999999999999999988888888888899999


Q ss_pred             eecCccccc-ccccc---------cCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchH
Q 017873           94 MEVDPSVEE-ETGST---------EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPS  163 (365)
Q Consensus        94 ~~~d~~~~~-~~~~~---------~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~  163 (365)
                      .++|+...+ ++...         .++ .+..++....||+.+...+.++.+.+.+.+||||||||||+++++++|.+|+
T Consensus        82 ~~id~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL~lp~  160 (334)
T 3iqw_A           82 MEIDPNGSMQDLLAGQTGDGDAGMGGV-GVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPT  160 (334)
T ss_dssp             EECCC---------------------------------CCHHHHHHHHHHHHHHHTSSCSEEEEECCCHHHHHHHHTHHH
T ss_pred             eecCHHHHHHHHHHHhhcccccccccc-hhhHHhhcCCCCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHH
Confidence            999988766 22111         233 3444555567999999999999999987799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhCC-CCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHH
Q 017873          164 TLEKGLDKMMSLKNKFGGMINQMTRLFGI-DDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE  242 (365)
Q Consensus       164 ~l~~~l~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~  242 (365)
                      .+.||+++++++.++++++++++.+.+|. +...+.+++++.++++++.++++++.|+||..|++++|++|+.+++.+++
T Consensus       161 ~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~  240 (334)
T 3iqw_A          161 VLEKALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETE  240 (334)
T ss_dssp             HC-----------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccHHHHHH
Confidence            99999999999999999998888776653 11245677889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCC-CcEEEecCCCCCCCCHHHHHHHHHhh
Q 017873          243 RLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDD-FHITKLPLLPEEVTGIEALKAFSQHF  321 (365)
Q Consensus       243 ~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~-~~i~~vp~~~~e~~g~~~L~~l~~~l  321 (365)
                      ++++.|+++|+++.|+|+|++.+|+....|++|++|+..|++++++|.+.|.+ .+++.+|+++.||.|+++|+.+++.|
T Consensus       241 r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~~pl~~~e~~G~~~L~~~~~~l  320 (334)
T 3iqw_A          241 RMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPLLVEEVRGKERLEKFSEML  320 (334)
T ss_dssp             HHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccCCCCEEEecCCCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999965654567999999999999999999999998 99999999999999999999999999


Q ss_pred             cCCCCCCC
Q 017873          322 VTPYQPST  329 (365)
Q Consensus       322 ~~~~~~~~  329 (365)
                      |+++.|-.
T Consensus       321 ~~~~~~~~  328 (334)
T 3iqw_A          321 IKPFVPPE  328 (334)
T ss_dssp             HSCCCCCC
T ss_pred             cCCCCCcc
Confidence            99998755

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=100.00  E-value=1.9e-55  Score=425.30  Aligned_cols=319  Identities=49%  Similarity=0.832  Sum_probs=218.3

Q ss_pred             cchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHH--HCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCc
Q 017873           14 IPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNL   91 (365)
Q Consensus        14 ~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la--~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l   91 (365)
                      +++++|+.++++.+++|+|+||||||||||+|+|+|.++|  +.|+||+|||+|++++++++|+.+.+..++.+.+.+|+
T Consensus         4 ~l~~~L~~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~~~~~~~~~~~~~~v~~~~~L   83 (348)
T 3io3_A            4 ELEPTLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAFCQKFGKDARKVEGLPNL   83 (348)
T ss_dssp             SCCSSSHHHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHHHHHTSCCCSSCEEETTEEEE
T ss_pred             ccchhHHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChHHHhccccCCCceeccCCCCc
Confidence            6889999999999999999999999999999999999999  89999999999999999999999988889998888999


Q ss_pred             eeeecCccccc-ccccc---------cCccchhHHhhhcCCCHHHHHHHHHHHHHHHhC------------CCcEEEEcC
Q 017873           92 YAMEVDPSVEE-ETGST---------EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTM------------DYSCIVFDT  149 (365)
Q Consensus        92 ~~~~~d~~~~~-~~~~~---------~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~------------~yD~IiiDt  149 (365)
                      ++.++|+...+ ++...         .++..+...+....||+.+...+.++++.+.+.            +||+|||||
T Consensus        84 ~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDt  163 (348)
T 3io3_A           84 SCMEIDPEAAMSDLQQQASQYNNDPNDPLKSMMSDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDT  163 (348)
T ss_dssp             EEEECCC-----------------------------------------------------------------CCEEEEEC
T ss_pred             eEEeeCHHHHHHHHHHHHHhhcccccccHhHHhHHhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcC
Confidence            99999988776 22111         134455555566779999999999999988874            799999999


Q ss_pred             CCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEE
Q 017873          150 APTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVC  229 (365)
Q Consensus       150 pp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~l  229 (365)
                      ||++|++++|.+|+.+.||+++++++.+++++++ +++..+      +.+++++.++++++.++++.+.|+||..|++++
T Consensus       164 pPtg~tLrlL~lP~~~~~~l~~~~~~~~~~~p~~-~~~~~~------~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vl  236 (348)
T 3io3_A          164 APTGHTLRFLQLPSTLEKLLSKFKDLSGKLGPML-SMMGGG------QQQDIFEKLNEVQKNVSEVNEQFTNPELTTFIC  236 (348)
T ss_dssp             SSHHHHHHHTC----------------------------------------------------CHHHHHHTCTTTEEEEE
T ss_pred             CCchHHHHHHhhHHHHHHHHHHHHHHHHhhhHHH-HhcccC------chHHHHHHHHHHHHHHHHHHHHHhCcCceEEEE
Confidence            9999999999999999999999999999998887 665433      357889999999999999999999999999999


Q ss_pred             eecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCC-CccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCC
Q 017873          230 VCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDD-EDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEV  308 (365)
Q Consensus       230 Vt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~-~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~  308 (365)
                      |++|+.+++.+++++++.|+++|+++.|+|+|++.++. .+..|++|+.|+..|++++++|.+.|++.+++.+|+++.||
T Consensus       237 Vt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~pl~~~e~  316 (348)
T 3io3_A          237 VCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYEDYHLVKMPLLGCEI  316 (348)
T ss_dssp             EEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCSSCC
T ss_pred             EecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHccCCCEEEecCCCCCC
Confidence            99999999999999999999999999999999995433 22479999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhhcCCCCCCCCcchhhhhhh
Q 017873          309 TGIEALKAFSQHFVTPYQPSTSRDTVEDLER  339 (365)
Q Consensus       309 ~g~~~L~~l~~~l~~~~~~~~~~~~~~~~~~  339 (365)
                      .|+++|+.+++.||.+.+|..++...|++|.
T Consensus       317 ~G~~~L~~~~~~l~~~~~p~~~~~~~~~~~~  347 (348)
T 3io3_A          317 RGVENLKKFSKFLLKPYDPKADSDIVFDLEE  347 (348)
T ss_dssp             CSHHHHHHHHHHHHSCCCTTTCGGGGGCCC-
T ss_pred             CCHHHHHHHHHHHcCCCCcccccchhhhccc
Confidence            9999999999999999999999999999886

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=100.00  E-value=6.6e-50  Score=387.67  Aligned_cols=321  Identities=37%  Similarity=0.626  Sum_probs=267.6

Q ss_pred             hhhhhhhcchhhHHhhhc-CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceee
Q 017873            7 DQDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLV   85 (365)
Q Consensus         7 ~~~~~~~~~~~~l~~~~~-~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~   85 (365)
                      ...|.++.+++++..+.. +.+++|+|+||||||||||+|+|+|.++|+.|+||+|||+|++++++++|+.+.+..+..+
T Consensus         4 ~~~E~~r~lrt~~~~~~~~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~~~~~~v   83 (349)
T 3ug7_A            4 KIKDSINSLRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFGHEPTKV   83 (349)
T ss_dssp             ------CTTHHHHHHHHHSSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTTCHHHHHHCSCCCSSCEEC
T ss_pred             HHHHHHHHHhhhHHHhhcccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCCCCCcCcccc
Confidence            457889999999998886 4567788999999999999999999999999999999999999999999999988888888


Q ss_pred             cCcCCceeeecCccccc-cccc----c-cCc----cchhH--HhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCh
Q 017873           86 NGFSNLYAMEVDPSVEE-ETGS----T-EGM----DSLFS--ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTG  153 (365)
Q Consensus        86 ~~~~~l~~~~~d~~~~~-~~~~----~-~~~----~~~~~--~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~  153 (365)
                      .|.++++..++++...+ ++..    . ..+    ..+..  +.....||..+...+.++.+.+++.+||||||||||++
T Consensus        84 ~g~~~l~~~~id~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~~~~yD~VIiDtpPt~  163 (349)
T 3ug7_A           84 KGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTG  163 (349)
T ss_dssp             TTCSSEEEEECCHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCSCSEEEECSCCCT
T ss_pred             ccccceeeeccCHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCCh
Confidence            88899999999887766 1110    0 000    11111  12346799999999999999988778999999999999


Q ss_pred             hHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHHhhh---CCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEe
Q 017873          154 HTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLF---GIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCV  230 (365)
Q Consensus       154 ~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lV  230 (365)
                      +++++|.+|+.+.+|++++++++.++..+..++..+.   |.....+.+++++.++++++++++++++|+||..|++++|
T Consensus       164 ~tlrlL~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV  243 (349)
T 3ug7_A          164 HTLRFLGMPEVMDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLV  243 (349)
T ss_dssp             TGGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEE
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEE
Confidence            9999999999999999999999998887776665543   3333456789999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCC
Q 017873          231 CIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTG  310 (365)
Q Consensus       231 t~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g  310 (365)
                      ++|+.+++.+++++++.|++.|+++.|+|+|++. +. ...|++|+.+...|+.+++++.+.|+..++..+|+.+.++.|
T Consensus       244 ~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~-~~-~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~~e~~g  321 (349)
T 3ug7_A          244 VIPEEMSILESERAMKALQKYGIPIDAVIVNQLI-PE-DVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRTEAKG  321 (349)
T ss_dssp             ECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC-CS-CCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEECCSSCSCS
T ss_pred             ECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCc-cc-cCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCCCCCC
Confidence            9999999999999999999999999999999994 43 235999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCC
Q 017873          311 IEALKAFSQHFVTPYQPST  329 (365)
Q Consensus       311 ~~~L~~l~~~l~~~~~~~~  329 (365)
                      +++|+.+++.||++.+|..
T Consensus       322 ~~~L~~~~~~l~~~~~~~~  340 (349)
T 3ug7_A          322 IETLKQIAKILYGEEEKEE  340 (349)
T ss_dssp             HHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHcCCCCccc
Confidence            9999999999999988865

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-49  Score=381.99  Aligned_cols=318  Identities=56%  Similarity=0.935  Sum_probs=268.2

Q ss_pred             hhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCC
Q 017873           11 ELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSN   90 (365)
Q Consensus        11 ~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~   90 (365)
                      .++.++++|+.+++++.++|+|+||||||||||+|+|+|.++|++|+||++||+|++++++++|+.+.+..+..+.|..+
T Consensus         2 ~~r~lr~~l~~~~~~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~~~l~~~l~~~~~~~~~~~~g~~~   81 (329)
T 2woo_A            2 SFDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGTKFGKDARKVPGFDN   81 (329)
T ss_dssp             -----CCSTHHHHHCTTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTTCHHHHHHSSCCCSSCEECTTCSS
T ss_pred             CcchhhccHHHHhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCcCHHHHhCCcCCCCCeeccCCCC
Confidence            47889999999998888999999999999999999999999999999999999999999999999987767777778889


Q ss_pred             ceeeecCccccc-ccc----c--cc-CccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhch
Q 017873           91 LYAMEVDPSVEE-ETG----S--TE-GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFP  162 (365)
Q Consensus        91 l~~~~~d~~~~~-~~~----~--~~-~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp  162 (365)
                      +...++++...+ ++.    .  .. -+...+..+...+||+.+...+.++.+.+.+.+||||||||||++++++++.+|
T Consensus        82 l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~pg~~e~~~~~~~~~~l~~~~yD~ViiDtpPtg~~l~lL~~p  161 (329)
T 2woo_A           82 LSAMEIDPNLSIQEMTEQADQQNPNNPLSGMMQDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFP  161 (329)
T ss_dssp             EEEEECCHHHHHHHHHHTC--------CCHHHHHHHTTSTTHHHHHHHHHHHHHHHHTCCSEEEEECCSSSCTTTGGGHH
T ss_pred             eeEEecCHHHHHHHHHHHHhhhhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCchHHHHHHHHH
Confidence            998888877655 111    1  00 011222333456799999999999999998668999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHH
Q 017873          163 STLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE  242 (365)
Q Consensus       163 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~  242 (365)
                      +.+.+|+++++++..++.++++.+++.+|..  .+.+.+...++.+++.++.+.+.++||..|++++|++|+.+++.+++
T Consensus       162 ~~~~~~l~~l~~~~~~~~~~~~~l~~~~g~~--~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~ea~  239 (329)
T 2woo_A          162 TVLEKALGKLGGLSSRFGPMINQMGSIMGVN--ANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETE  239 (329)
T ss_dssp             HHHHHHHHHHHTSCSSCHHHHHHHHHHHC-------CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHHHH
Confidence            9999999999999988888777776665531  23345677889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHhhc
Q 017873          243 RLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFV  322 (365)
Q Consensus       243 ~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~l~  322 (365)
                      ++++.|+.+|+++.++|+|++.+|+ ...|++|..+...|+++++++.+.|.+.++..+|+++.++.|+++|+.+++.++
T Consensus       240 ~~~~~L~~~gi~v~gvVvN~~~~p~-~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~vP~~~~e~~g~~~L~~l~~~l~  318 (329)
T 2woo_A          240 RMIQELTSYEIDTHNIVVNQLLLDP-NTTCPQCMARRKMQQKYLAQIEELYEDFHVVKVPQVPAEVRGTEALKSFSEMLV  318 (329)
T ss_dssp             HHHHHHHHHTCEEEEEEEEEECCCS-SCCCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCSSCCCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCEEEEeCCcCcc-cccCHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCCCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999999996466 457999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCc
Q 017873          323 TPYQPSTSR  331 (365)
Q Consensus       323 ~~~~~~~~~  331 (365)
                      .++.|..++
T Consensus       319 ~~~~~~~~~  327 (329)
T 2woo_A          319 KPYVYPTSG  327 (329)
T ss_dssp             SCCC-----
T ss_pred             cCCCccccc
Confidence            998775543

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=6.4e-48  Score=370.19  Aligned_cols=306  Identities=38%  Similarity=0.663  Sum_probs=255.9

Q ss_pred             HHhhhc-CCC-eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeec
Q 017873           19 VRNILE-QDS-LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEV   96 (365)
Q Consensus        19 l~~~~~-~~~-~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~   96 (365)
                      +++++. .++ ++|+|+||||||||||+|+|+|.++|++|+||++||+|++++++++|+.+.+..+..+  .++++...+
T Consensus         3 i~~~l~~~~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~~~~~~v--~~~l~~~~~   80 (324)
T 3zq6_A            3 FKDLFKFNKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSLEREIGHTPTKI--TENLYAVEI   80 (324)
T ss_dssp             GGGGCCCBTTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTSCCCSSCEEE--ETTEEEEEC
T ss_pred             hhHhhcCCCCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCCcCHHHHhCCcCCCCCccC--CCCceeecc
Confidence            344443 234 6899999999999999999999999999999999999999999999999877666665  378888888


Q ss_pred             Cccccc-c----ccc------ccCccchhHH--hhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchH
Q 017873           97 DPSVEE-E----TGS------TEGMDSLFSE--LANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPS  163 (365)
Q Consensus        97 d~~~~~-~----~~~------~~~~~~~~~~--~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~  163 (365)
                      ++...+ +    +..      ..++..+...  .....||..+...+.++.+.+++.+||+|||||||+++++++|.+|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPt~~~l~lL~~p~  160 (324)
T 3zq6_A           81 DPEVAMEEYQAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPE  160 (324)
T ss_dssp             CHHHHHHHHHHHC---------------------CTTSTTHHHHHHHHHHHHHHHHCCCSEEEEECCCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhHH
Confidence            887765 1    111      1122222221  23467999999999999998887789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhCC-CCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHH
Q 017873          164 TLEKGLDKMMSLKNKFGGMINQMTRLFGI-DDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE  242 (365)
Q Consensus       164 ~l~~~l~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~  242 (365)
                      .+.+|++++++++++...+...++.+++. +...+.+++++.+++++++++++.++|+||..|++++|++|+.+++.+++
T Consensus       161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~  240 (324)
T 3zq6_A          161 IMDSWVGKMIKIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESE  240 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHH
Confidence            99999999999999887766655544321 11123378999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHhhc
Q 017873          243 RLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHFV  322 (365)
Q Consensus       243 ~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~l~  322 (365)
                      ++++.|++.|+++.|+|+|++. +. ...|++|+.+...|+++++++.+.|+..++..+|+.+.|+.|+++|+.+++.||
T Consensus       241 ~~~~~l~~~gi~v~gvV~N~~~-~~-~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~iPl~~~e~~g~~~L~~~~~~l~  318 (324)
T 3zq6_A          241 RAMKALEKYSIHADGVIVNQVL-PE-ESDCEFCNARRKLQQERLKQIREKFSDKVVAEVPLLKKEAKGIETLEKIAEQLY  318 (324)
T ss_dssp             HHHHHHHHTTCCEEEEEEEEEC-CS-CCCSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCSSCSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCccEEEEcCCc-cc-cCCChHHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999999994 44 236999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 017873          323 TPYQPS  328 (365)
Q Consensus       323 ~~~~~~  328 (365)
                      ++.+|.
T Consensus       319 ~~~~p~  324 (324)
T 3zq6_A          319 GEPEPE  324 (324)
T ss_dssp             CSCC--
T ss_pred             CCCCCC
Confidence            998873

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=100.00  E-value=6.4e-48  Score=374.21  Aligned_cols=315  Identities=46%  Similarity=0.816  Sum_probs=256.3

Q ss_pred             chhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHH--HCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCce
Q 017873           15 PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLY   92 (365)
Q Consensus        15 ~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la--~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~   92 (365)
                      +.++|+.++++..++|+|+||||||||||+|+|||.+||  +.|+||+|||+|++++++++||.+.+..++.+.|+.|++
T Consensus         5 ~~~~l~~l~~~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~~~l~~~lg~~~~~~~~~v~gl~~l~   84 (354)
T 2woj_A            5 VEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKFGKDARKVTGMNNLS   84 (354)
T ss_dssp             CCSSCHHHHTCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCCHHHHHTSCCCSSCEECTTCSSEE
T ss_pred             cCccHHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHhCCCCCCCceeecCCCceE
Confidence            678899999888889999999999999999999999999  999999999999999999999998888888888889999


Q ss_pred             eeecCccccc-ccccc-----c---------Cc-----cchhHHhhhcCCCHHHHHHHHHHHHHHHhC------CCcEEE
Q 017873           93 AMEVDPSVEE-ETGST-----E---------GM-----DSLFSELANAIPGIDEAMSFAEMLKLVQTM------DYSCIV  146 (365)
Q Consensus        93 ~~~~d~~~~~-~~~~~-----~---------~~-----~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~------~yD~Ii  146 (365)
                      ..++++...+ ++...     .         ++     .....++....||+.+...+.++++.+++.      +|||||
T Consensus        85 ~~~id~~~~l~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~II  164 (354)
T 2woj_A           85 CMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVI  164 (354)
T ss_dssp             EEECCHHHHHHHHHTC--------------------CCSSHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEE
T ss_pred             EEecCHHHHHHHHHHHHHhhcccccccchhhhhhhccchhHHHHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEE
Confidence            9999887655 22110     0         12     122234445679999999999999998873      699999


Q ss_pred             EcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceE
Q 017873          147 FDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTT  226 (365)
Q Consensus       147 iDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~  226 (365)
                      |||||+++++++|.+|+.+.+|+++++++.+++.+++..+..+       +.++++..++++++.++++.+.|+||..+.
T Consensus       165 iDtpPtG~tLrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~  237 (354)
T 2woj_A          165 FDTAPTGHTLRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGA-------GNVDISGKLNELKANVETIRQQFTDPDLTT  237 (354)
T ss_dssp             EECCCHHHHHHHHTHHHHHHHHHHCC----------------------------CHHHHHHHHHHHHHHHHHHTCTTTEE
T ss_pred             ECCCCchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------ChHHHHHHHHHHHHHHHHHHHHhcCCCCcE
Confidence            9999999999999999999999999999888887766554332       124578899999999999999999999999


Q ss_pred             EEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCcc--chHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCC
Q 017873          227 FVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDV--ESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLL  304 (365)
Q Consensus       227 ~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~~--~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~  304 (365)
                      +++|++|+.+++.+++++++.|+.+|+++.++|+|++.+|....  .|++|..+...|+++++++...|.+.++.++|+.
T Consensus       238 ~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~~~~~~~~~~~~~~~~~~~~q~~~l~~l~~~~~~~~v~~~P~~  317 (354)
T 2woj_A          238 FVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLDQIDELYEDFHVVKMPLC  317 (354)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCC------CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred             EEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCCCcccccccccHHHHHHHHHHHHHHHHHHHhcCCCCEEEeecC
Confidence            99999999999999999999999999999999999995365322  5889999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHhhcCCCCCCCCcchhhh
Q 017873          305 PEEVTGIEALKAFSQHFVTPYQPSTSRDTVED  336 (365)
Q Consensus       305 ~~e~~g~~~L~~l~~~l~~~~~~~~~~~~~~~  336 (365)
                      ..++.|.++|+.+++.++.+.+|.+.+..+|+
T Consensus       318 ~~~~~g~~~l~~la~~l~~~~~~~~~~~~~~~  349 (354)
T 2woj_A          318 AGEIRGLNNLTKFSQFLNKEYNPITDGKVIYE  349 (354)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTCCHHHHGGGGGG
T ss_pred             CCCCccHHHHHHHHHHHhcCCCCccchhhhhh
Confidence            99999999999999999998877444444443

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=100.00  E-value=1.2e-42  Score=338.22  Aligned_cols=265  Identities=17%  Similarity=0.250  Sum_probs=212.9

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccc-c--
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-E--  103 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~--  103 (365)
                      +++|+|+||||||||||+|+|+|.++|+.|+||++||+ |+++++++|+.+.+..++.+  .+|++..++|+...+ +  
T Consensus         1 M~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~~l~~~~~~~~~~~~~~v--~~~L~~~eid~~~~~~~~~   77 (374)
T 3igf_A            1 MALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEPVLPLLLEQTLTPDPQQI--APNLEVVQFQSSVLLERNW   77 (374)
T ss_dssp             -CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCSHHHHHHTSCCCSSCEEE--ETTEEEEECCHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCCChHHhhCCCCCCCcccc--cccccccccCHHHHHHHHH
Confidence            36899999999999999999999999999999999999 99999999999877777777  489999999987765 1  


Q ss_pred             ---------cccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHH
Q 017873          104 ---------TGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMS  174 (365)
Q Consensus       104 ---------~~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~  174 (365)
                               .....++..+........||+++...+.++.+.+.+.+||||||||||+++++++|.+|+.+.||++++++
T Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~yD~VIvDtpPtg~tLrlL~lP~~l~~~l~~l~~  157 (374)
T 3igf_A           78 EEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGTGDAFTLRMLGLPESLSWYVRRFRQ  157 (374)
T ss_dssp             HHHHHHHHHHCSSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTCCSEEEEECCCSHHHHHHHTHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhhcccccccccchhhhccCCCHHHHHHHHHHHHHHhccCCCEEEEeCCCChHHhhhhhhhHHHHHHHHHHHH
Confidence                     11123444455555667899999999999999888878999999999999999999999999999999988


Q ss_pred             HHHh------h--hhhHHHHHhh-hCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHH
Q 017873          175 LKNK------F--GGMINQMTRL-FGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLV  245 (365)
Q Consensus       175 ~~~~------~--~~~~~~~~~~-~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~  245 (365)
                      +.++      +  .+++.++.+. +|.  ..+.+++++.++++++++++++++|+||+.|++++|++|+.+++.++++++
T Consensus       158 ~~~~~~~g~~~~~~~~~~p~~~~~~~~--~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~sl~ea~r~~  235 (374)
T 3igf_A          158 LFVNSDLGKTIAESPLIQPLISSFFNV--NWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLEVVSVRYLW  235 (374)
T ss_dssp             CC-------------------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHHHHHHHHHHH
T ss_pred             HHhhhccccccccchhhhhhhhhhccC--CCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCccHHHHHHHHH
Confidence            8777      3  4445554332 232  356688999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHhh
Q 017873          246 QELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHF  321 (365)
Q Consensus       246 ~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~l  321 (365)
                      +.|+++|+++.|+|+|+   ++                 ++++|.+.|.+.++..+|+++.|     .|+.+++.+
T Consensus       236 ~~L~~~gi~v~gvVvN~---~~-----------------~l~~i~~~F~~~~v~~vpl~~~e-----~l~~l~~~l  286 (374)
T 3igf_A          236 GSAQQIGLTIGGVIQVS---SQ-----------------TEGDLSAEFTPLSVTVVPDVTKG-----DWQPLIDAL  286 (374)
T ss_dssp             HHHHHHTCCEEEEEECC---CS-----------------CCCCCGGGSTTSCEEECCCCBTT-----BCHHHHHHC
T ss_pred             HHHHHcCCCccEEEEcC---HH-----------------HHHHHHHhcCCCceEECCCCChh-----HHHHHHHHh
Confidence            99999999999999999   21                 45778899999999999999888     788888777

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=100.00  E-value=5.7e-36  Score=308.72  Aligned_cols=275  Identities=29%  Similarity=0.411  Sum_probs=212.6

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccc-cc
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET  104 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~~  104 (365)
                      ++++|+|+||||||||||+|+|+|.++|++|+|||+||+|++++++++|+.+.+..+..+.+.+|+...++++.... .+
T Consensus         6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~~~l~~~l~~~~~~~~~~v~~~~~l~~~~~d~~~~~~~~   85 (589)
T 1ihu_A            6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQY   85 (589)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHTTSCCCSSCEECTTSTTEEEEECCHHHHHHHH
T ss_pred             CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCCcCHHHHhCCcccCCCceeccchhhhhccCCHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999988777887777889999888876544 11


Q ss_pred             ----ccc-cCc-cc-hhHHhhh--cCCCHHHHHHHHHHHHHHH----hCCCcEEEEcCCCChhHHHhhhchHHHHHHHHH
Q 017873          105 ----GST-EGM-DS-LFSELAN--AIPGIDEAMSFAEMLKLVQ----TMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDK  171 (365)
Q Consensus       105 ----~~~-~~~-~~-~~~~~~~--~~pg~~~~~~l~~l~~~l~----~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~  171 (365)
                          ... .++ .. .......  ..++..+...+..+...+.    ..+||+|||||||++++++++.+|+.+.+|+++
T Consensus        86 ~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~~~yD~VIiDt~P~~~~lrll~lP~~~~~~l~~  165 (589)
T 1ihu_A           86 RARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDS  165 (589)
T ss_dssp             HHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCCCHHHHHHHHCGGGGTCCC--
T ss_pred             HHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhcccCCEEEECCCCchhHHHHHHhHHHHHHHHHH
Confidence                000 011 00 0011101  1123445545555555444    126999999999999999999999999888766


Q ss_pred             HHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC
Q 017873          172 MMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF  251 (365)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~  251 (365)
                      .......+    .+++   +             +...++.+.++.+.+.||..|.+++|++|+.+++.++.++++.|+++
T Consensus       166 ~~~~~~~l----~~~~---~-------------l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~  225 (589)
T 1ihu_A          166 NPEGASCL----GPMA---G-------------LEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAI  225 (589)
T ss_dssp             ----CCCC----GGGG---G-------------CCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccc----chhh---h-------------hhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhC
Confidence            53221111    1111   1             12234567788889999999999999999999999999999999999


Q ss_pred             CCCcCeEEEcCccCCCCc-cchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHhh
Q 017873          252 EIDTHNIIINQVLYDDED-VESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHF  321 (365)
Q Consensus       252 gi~v~~vVvN~~~~~~~~-~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~l  321 (365)
                      |+++.++|+|++. +... ..|++|+.+...|++++++|.+.|++.++..+|+.+.++.|.+.|+.++..+
T Consensus       226 g~~~~gvVlN~v~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~vPl~~~e~~g~~~l~~~~~~~  295 (589)
T 1ihu_A          226 GLKNQYLVINGVL-PKTEAANDTLAAAIWEREQEALANLPADLAGLPTDTLFLQPVNMVGVSALSRLLSTQ  295 (589)
T ss_dssp             TCCCEEEEEEEEC-CGGGGSSCHHHHHHHHHHHHHHHTCCHHHHTSCEEEEECCSSCCCSHHHHHHTTCSC
T ss_pred             CCCCCEEEEcCCc-CccccccCHHHHHHHHHHHHHHHHHHHhccCCCEEEecCCCCCCCCHHHHHHHHhhh
Confidence            9999999999994 4322 3689999999999999999999999999999999999999999999998776

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=99.98  E-value=1e-31  Score=276.97  Aligned_cols=259  Identities=28%  Similarity=0.409  Sum_probs=182.2

Q ss_pred             hhHHhhhc---CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCcee
Q 017873           17 GSVRNILE---QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYA   93 (365)
Q Consensus        17 ~~l~~~~~---~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~   93 (365)
                      +.|+.++.   ..+++++|++|||||||||+|+|+|..++++|+||++||+||+++++.+|+..          .+++..
T Consensus       313 ~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~~l~~~l~~~----------~~~l~~  382 (589)
T 1ihu_A          313 PSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTLNGS----------LNNLQV  382 (589)
T ss_dssp             CCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC---------------------CCEEE
T ss_pred             chhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcccHhHHhccc----------CCCcee
Confidence            45666655   35678899999999999999999999999999999999999999999999863          245555


Q ss_pred             eecCccccc-----cccc--ccCccch-hHHh--hhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchH
Q 017873           94 MEVDPSVEE-----ETGS--TEGMDSL-FSEL--ANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPS  163 (365)
Q Consensus        94 ~~~d~~~~~-----~~~~--~~~~~~~-~~~~--~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~  163 (365)
                      ..+++....     .+..  ...+... ....  ....|+..+...+..+.+.+++.+||||||||||++++++++.+|+
T Consensus       383 ~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~  462 (589)
T 1ihu_A          383 SRIDPHEETERYRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATG  462 (589)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC-
T ss_pred             eecchHHHHHHHHHHHHHhhhccCChhhHHHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHH
Confidence            555543222     0100  0111110 0111  1123556666677777777665579999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHH
Q 017873          164 TLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETER  243 (365)
Q Consensus       164 ~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~  243 (365)
                      .+..++.+..                 +.               .. .+..+...+.||..+.+++|++|+.+++.++.+
T Consensus       463 ~~~~~~~~~~-----------------~~---------------~~-~~~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~  509 (589)
T 1ihu_A          463 AYHREIAKKM-----------------GE---------------KG-HFTTPMMLLQDPERTKVLLVTLPETTPVLEAAN  509 (589)
T ss_dssp             --------------------------------------------------CCHHHHHCTTTEEEEEEECSSHHHHHHHHH
T ss_pred             HHHHHHHHhc-----------------cc---------------ch-HHHHHHHHhcCCCCCEEEEEeCCCccHHHHHHH
Confidence            8654432211                 10               00 122333457788889999999999999999999


Q ss_pred             HHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHh
Q 017873          244 LVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQH  320 (365)
Q Consensus       244 ~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~  320 (365)
                      +++.|+..|+++.++|+|++. +.....|++|..|...|.++++++.+.|+ .++..+|+.+.||.|++.|+.++.+
T Consensus       510 ~~~~l~~~g~~~~gvVvN~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~v~~iP~~~~e~~g~~~l~~~~~~  584 (589)
T 1ihu_A          510 LQADLERAGIHPWGWIINNSL-SIADTRSPLLRMRAQQELPQIESVKRQHA-SRVALVPVLASEPTGIDKLKQLAGH  584 (589)
T ss_dssp             HHHHHHHTTCCCCEEEEEEES-TTSCCCCHHHHHHHHHHHHHHHHHHTTTC-SSEEEEECCSSCCCSHHHHHHHHCC
T ss_pred             HHHHHHHCCCCCCEEEEeCCc-CCCCCcCHHHHHHHHHHHHHHHHHHHhcC-CcEEEccCCCCCCCCHHHHHHHhcc
Confidence            999999999999999999994 44346789999999999999999999995 5899999999999999999998754

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=99.92  E-value=8.9e-25  Score=205.68  Aligned_cols=190  Identities=17%  Similarity=0.217  Sum_probs=133.1

Q ss_pred             hhhhhhhhcchhhHHhhh-cCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCce
Q 017873            6 QDQDQELEIPEGSVRNIL-EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPT   83 (365)
Q Consensus         6 ~~~~~~~~~~~~~l~~~~-~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~   83 (365)
                      +...|+++.++++|.... +++.+.|+|+|+|||+||||+|+|||..+|+.|+||||||+|++ ++++.+|+.+...   
T Consensus        70 ~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~---  146 (286)
T 3la6_A           70 DLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVN---  146 (286)
T ss_dssp             CHHHHHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTT---
T ss_pred             CHHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCC---
Confidence            346799999999998744 45667788999999999999999999999999999999999987 7899999875321   


Q ss_pred             eecCcCCceeeecCcccccccccccCccchhHHhhhcCCCHHHH---HHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhh
Q 017873           84 LVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEA---MSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ  160 (365)
Q Consensus        84 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~---~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~  160 (365)
                         ++.++.....+....+.-....++..+...  ...|+..+.   ..+..+++.+++ .||+|||||||.....+.. 
T Consensus       147 ---gl~~~l~~~~~~~~~i~~~~~~~l~vl~~g--~~~~~~~ell~~~~l~~ll~~l~~-~yD~VIIDtpp~~~~~da~-  219 (286)
T 3la6_A          147 ---GLSEILIGQGDITTAAKPTSIAKFDLIPRG--QVPPNPSELLMSERFAELVNWASK-NYDLVLIDTPPILAVTDAA-  219 (286)
T ss_dssp             ---CHHHHHHTSSCTTTTCEECSSTTEEEECCC--SCCSCHHHHHTSHHHHHHHHHHHH-HCSEEEEECCCTTTCTHHH-
T ss_pred             ---CHHHHccCCCCHHHheeccCCCCEEEEeCC--CCCCCHHHHhchHHHHHHHHHHHh-CCCEEEEcCCCCcchHHHH-
Confidence               111111111111111100001112111111  122344443   367778888877 6999999999975432211 


Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHH
Q 017873          161 FPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYE  240 (365)
Q Consensus       161 lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~e  240 (365)
                                              .+    .                              ...+.+++|+.++.++..+
T Consensus       220 ------------------------~l----~------------------------------~~aD~vllVv~~~~~~~~~  241 (286)
T 3la6_A          220 ------------------------IV----G------------------------------RHVGTTLMVARYAVNTLKE  241 (286)
T ss_dssp             ------------------------HH----T------------------------------TTCSEEEEEEETTTSBHHH
T ss_pred             ------------------------HH----H------------------------------HHCCeEEEEEeCCCCcHHH
Confidence                                    00    0                              1135799999999999999


Q ss_pred             HHHHHHHHHhCCCCcCeEEEcCc
Q 017873          241 TERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       241 t~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.++++.|+..|+++.|+|+|++
T Consensus       242 ~~~~~~~l~~~g~~~~GvVlN~v  264 (286)
T 3la6_A          242 VETSLSRFEQNGIPVKGVILNSI  264 (286)
T ss_dssp             HHHHHHHHHHTTCCCCEEEEEEE
T ss_pred             HHHHHHHHHhCCCCEEEEEEcCc
Confidence            99999999999999999999999

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=99.90  E-value=1.1e-23  Score=196.70  Aligned_cols=191  Identities=17%  Similarity=0.173  Sum_probs=130.3

Q ss_pred             chhhhhhhhcchhhHHhhhc-CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCc
Q 017873            5 DQDQDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTP   82 (365)
Q Consensus         5 ~~~~~~~~~~~~~~l~~~~~-~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~   82 (365)
                      .+...|+++.++++|..... +.++.|+|+|.|||+||||+|+|||.++|+.|+||||||+|++ ++++.+|+.+...  
T Consensus        59 ~~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~--  136 (271)
T 3bfv_A           59 KSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNE--  136 (271)
T ss_dssp             TSHHHHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSS--
T ss_pred             CCHHHHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCC--
Confidence            34567999999999997754 4456677999999999999999999999999999999999987 7899999865321  


Q ss_pred             eeecCcCCceeeecCcccccccccccCccchhHHhhhcCCCHHHH---HHHHHHHHHHHhCCCcEEEEcCCCChhHHHhh
Q 017873           83 TLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEA---MSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLL  159 (365)
Q Consensus        83 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~---~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l  159 (365)
                          ++.++.....+....+.-....++..+..  ....++..+.   ..+.++++.+++ +||||||||||.....+..
T Consensus       137 ----gl~~~L~~~~~l~~~i~~~~~~~l~vl~~--g~~~~~~~ell~~~~l~~ll~~l~~-~yD~VIIDtpp~~~~~d~~  209 (271)
T 3bfv_A          137 ----GLSSLLLNWSTYQDSIISTEIEDLDVLTS--GPIPPNPSELITSRAFANLYDTLLM-NYNFVIIDTPPVNTVTDAQ  209 (271)
T ss_dssp             ----SHHHHHTTSSCHHHHEEECSSTTEEEECC--CSCCSCHHHHHTSHHHHHHHHHHHH-HCSEEEEECCCTTTCSHHH
T ss_pred             ----CHHHHhCCCCCHHHcEEeCCCCCEEEEEC--CCCCCCHHHHhChHHHHHHHHHHHh-CCCEEEEeCCCCchHHHHH
Confidence                11111111111111110000011111110  0112333333   356777777776 6999999999965422111


Q ss_pred             hchHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHH
Q 017873          160 QFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLY  239 (365)
Q Consensus       160 ~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~  239 (365)
                                               .+.                              ..    .+.+++|+.++.++..
T Consensus       210 -------------------------~l~------------------------------~~----aD~vilVv~~~~~~~~  230 (271)
T 3bfv_A          210 -------------------------LFS------------------------------KF----TGNVVYVVNSENNNKD  230 (271)
T ss_dssp             -------------------------HHH------------------------------HH----HCEEEEEEETTSCCHH
T ss_pred             -------------------------HHH------------------------------HH----CCEEEEEEeCCCCcHH
Confidence                                     000                              01    2478999999999999


Q ss_pred             HHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          240 ETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       240 et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      .+.++++.|+..|+++.|+|+|++
T Consensus       231 ~~~~~~~~l~~~~~~~~GvVlN~~  254 (271)
T 3bfv_A          231 EVKKGKELIEATGAKLLGVVLNRM  254 (271)
T ss_dssp             HHHHHHHHHHTTTCEEEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCEEEEEEeCC
Confidence            999999999999999999999999

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=99.90  E-value=2e-23  Score=197.72  Aligned_cols=190  Identities=18%  Similarity=0.188  Sum_probs=129.9

Q ss_pred             hhhhhhhhcchhhHHhhhc-CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCce
Q 017873            6 QDQDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPT   83 (365)
Q Consensus         6 ~~~~~~~~~~~~~l~~~~~-~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~   83 (365)
                      +...|+++.++++|..... ..++.|+|+|.|||+||||+|+|||..+|+.|+||||||+|++ ++++.+|+.....   
T Consensus        82 ~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~---  158 (299)
T 3cio_A           82 DSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEH---  158 (299)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSS---
T ss_pred             CHHHHHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCC---
Confidence            4457899999999987654 4556778999999999999999999999999999999999985 9999999865321   


Q ss_pred             eecCcCCceeeecCcccccccccccCccchhHHhhhcCCCHHHH---HHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhh
Q 017873           84 LVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEA---MSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ  160 (365)
Q Consensus        84 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~---~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~  160 (365)
                         ++.++.....+....+.-....++..+..  ....++..+.   ..+.++++.+++ +||+|||||||.....+.. 
T Consensus       159 ---gl~~~L~~~~~l~~~i~~~~~~~l~vl~~--g~~~~~~~ell~~~~l~~ll~~l~~-~yD~VIIDtpp~~~~~d~~-  231 (299)
T 3cio_A          159 ---GLSEYLAGKDELNKVIQHFGKGGFDVITR--GQVPPNPSELLMRDRMRQLLEWAND-HYDLVIVDTPPMLAVSDAA-  231 (299)
T ss_dssp             ---SHHHHHTTSSCHHHHCEEETTTTEEEECC--CSCCSCHHHHHTSHHHHHHHHHHHH-HCSEEEEECCCTTTCTHHH-
T ss_pred             ---CHHHHCcCCCCHHHhhhccCCCCEEEEEC--CCCCCCHHHHhCHHHHHHHHHHHHh-CCCEEEEcCCCCchhHHHH-
Confidence               11111111111111110000011111111  0112333332   356777777776 6999999999965421111 


Q ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHH
Q 017873          161 FPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYE  240 (365)
Q Consensus       161 lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~e  240 (365)
                                              .+.                              ..    .+.+++|+.++.++..+
T Consensus       232 ------------------------~l~------------------------------~~----ad~vilV~~~~~~~~~~  253 (299)
T 3cio_A          232 ------------------------VVG------------------------------RS----VGTSLLVARFGLNTAKE  253 (299)
T ss_dssp             ------------------------HHG------------------------------GG----CSEEEEEEETTTSCTTH
T ss_pred             ------------------------HHH------------------------------HH----CCEEEEEEcCCCChHHH
Confidence                                    000                              01    24789999999999999


Q ss_pred             HHHHHHHHHhCCCCcCeEEEcCc
Q 017873          241 TERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       241 t~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.++++.|+..|+++.|+|+|++
T Consensus       254 ~~~~~~~l~~~~~~~~GvVlN~~  276 (299)
T 3cio_A          254 VSLSMQRLEQAGVNIKGAILNGV  276 (299)
T ss_dssp             HHHHHHHHHHTTCCCCCEEEEEC
T ss_pred             HHHHHHHHHhCCCCeEEEEEeCC
Confidence            99999999999999999999999

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=99.88  E-value=4.1e-22  Score=181.99  Aligned_cols=173  Identities=15%  Similarity=0.161  Sum_probs=110.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCce---eeecCc------
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLY---AMEVDP------   98 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~---~~~~d~------   98 (365)
                      |+|+| |+||||||||+|+|||.+||++|+||++||+|++++++.+||........ ..+..++.   ......      
T Consensus         1 mkI~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~l~~~lg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   78 (254)
T 3kjh_A            1 MKLAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTLGLSIEEAYA-ITPLIEMKDEIREKTGDGGLLIL   78 (254)
T ss_dssp             CEEEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTTSCHHHHTTCCHHHHHT-SCCGGGCHHHHHHHHCSSSCCCS
T ss_pred             CEEEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcChHHHhCCCcccccc-cccchhHHHHHHhhccCCccccc
Confidence            46788 89999999999999999999999999999999999999999875321000 00000000   000000      


Q ss_pred             ccccc-cc-----cccCccc-hhHHh-hhcCCC--HHHHHHHHHHHHHH-HhCCCcEEEEcCCCChhHHHhhhchHHHHH
Q 017873           99 SVEEE-TG-----STEGMDS-LFSEL-ANAIPG--IDEAMSFAEMLKLV-QTMDYSCIVFDTAPTGHTLRLLQFPSTLEK  167 (365)
Q Consensus        99 ~~~~~-~~-----~~~~~~~-~~~~~-~~~~pg--~~~~~~l~~l~~~l-~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~  167 (365)
                      ...++ +.     ...++.. +.... .....+  ..+...+.++++.+ +. +||||||||||+.+.....        
T Consensus        79 ~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~yD~viiD~pp~~~~~~~~--------  149 (254)
T 3kjh_A           79 NPKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLD-KKEAVVMDMGAGIEHLTRG--------  149 (254)
T ss_dssp             SCCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHT-CCSEEEEEECTTCTTCCHH--------
T ss_pred             CCchhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccC-CCCEEEEeCCCcccHHHHH--------
Confidence            00000 00     0011111 00000 000001  12224577888887 65 7999999999976542111        


Q ss_pred             HHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHH
Q 017873          168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQE  247 (365)
Q Consensus       168 ~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~  247 (365)
                                                                        .+  ...+.+++|+.|+..++..+.++.+.
T Consensus       150 --------------------------------------------------~l--~~aD~viiv~~~~~~s~~~~~~~~~~  177 (254)
T 3kjh_A          150 --------------------------------------------------TA--KAVDMMIAVIEPNLNSIKTGLNIEKL  177 (254)
T ss_dssp             --------------------------------------------------HH--TTCSEEEEEECSSHHHHHHHHHHHHH
T ss_pred             --------------------------------------------------HH--HHCCEEEEecCCCHHHHHHHHHHHHH
Confidence                                                              01  11358999999999999999999999


Q ss_pred             HHhCCCCcCeEEEcCc
Q 017873          248 LTKFEIDTHNIIINQV  263 (365)
Q Consensus       248 L~~~gi~v~~vVvN~~  263 (365)
                      +...+++..++|+|++
T Consensus       178 ~~~~~~~~~~~v~N~~  193 (254)
T 3kjh_A          178 AGDLGIKKVRYVINKV  193 (254)
T ss_dssp             HHHHTCSCEEEEEEEE
T ss_pred             HHHcCCccEEEEEeCC
Confidence            9999998889999999

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=99.87  E-value=8.7e-22  Score=182.58  Aligned_cols=169  Identities=20%  Similarity=0.185  Sum_probs=110.4

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC-ChhhHhhcccCCC----ceeec---CcCCceeeec
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLSDAFQQRFTKT----PTLVN---GFSNLYAMEV   96 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~-~l~~~~~~~~~~~----~~~~~---~~~~l~~~~~   96 (365)
                      +.++.|+|+|+||||||||+|+|||.+|+++|+||++||+|++. +++.+|+......    .....   ..+|+.++..
T Consensus        16 ~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~vlp~   95 (262)
T 2ph1_A           16 KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKVMSM   95 (262)
T ss_dssp             TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEEECG
T ss_pred             cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEEEec
Confidence            34678889999999999999999999999999999999999996 6888888653210    00000   0112221111


Q ss_pred             CcccccccccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHH
Q 017873           97 DPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLK  176 (365)
Q Consensus        97 d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~  176 (365)
                      ...          +..  ........+......+.++++.+.+.+||||||||||+.+...+.                 
T Consensus        96 ~~~----------~~~--~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~-----------------  146 (262)
T 2ph1_A           96 QFL----------LPK--ENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLT-----------------  146 (262)
T ss_dssp             GGG----------STT--CSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHH-----------------
T ss_pred             ccc----------CCC--cccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHH-----------------
Confidence            000          000  000000112222234555655554237999999999976521110                 


Q ss_pred             HhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcC
Q 017873          177 NKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTH  256 (365)
Q Consensus       177 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~  256 (365)
                              ..                              .+.   ..+.+++|+.|+..++..+.++++.++..|+++.
T Consensus       147 --------~~------------------------------~~~---~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~  185 (262)
T 2ph1_A          147 --------VM------------------------------QDA---KPTGVVVVSTPQELTAVIVEKAINMAEETNTSVL  185 (262)
T ss_dssp             --------HH------------------------------HHH---CCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEE
T ss_pred             --------HH------------------------------hhc---cCCeEEEEecCccchHHHHHHHHHHHHhCCCCEE
Confidence                    00                              000   0247899999999999999999999999999999


Q ss_pred             eEEEcCc
Q 017873          257 NIIINQV  263 (365)
Q Consensus       257 ~vVvN~~  263 (365)
                      |+|+|++
T Consensus       186 gvV~N~~  192 (262)
T 2ph1_A          186 GLVENMS  192 (262)
T ss_dssp             EEEETTC
T ss_pred             EEEECCC
Confidence            9999998

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=99.86  E-value=3.6e-21  Score=183.21  Aligned_cols=177  Identities=19%  Similarity=0.195  Sum_probs=100.0

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCcccccccc
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETG  105 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  105 (365)
                      +.+.|+++ |||||||||+|+|||.+||+.|+||++||+||+.+.+..+.....................+.....+ ..
T Consensus        47 ~aKVIAIa-GKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i-~~  124 (314)
T 3fwy_A           47 GAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFV-FE  124 (314)
T ss_dssp             CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHC-EE
T ss_pred             CceEEEEE-CCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHhe-ee
Confidence            34455564 99999999999999999999999999999999988776554332111000000000000000000000 00


Q ss_pred             cccCccchhHH--h-hhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhh
Q 017873          106 STEGMDSLFSE--L-ANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGM  182 (365)
Q Consensus       106 ~~~~~~~~~~~--~-~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~  182 (365)
                      ...++..+...  . ...+.+......+..+........||||++||||+...+.+.                       
T Consensus       125 ~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~~-----------------------  181 (314)
T 3fwy_A          125 GFNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFA-----------------------  181 (314)
T ss_dssp             CGGGCEEEECCCCCTTCSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGG-----------------------
T ss_pred             cCCCeEEEeCCCCcccchhhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhhhH-----------------------
Confidence            01111100000  0 001112222223333332222236999999999976543321                       


Q ss_pred             HHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC----CCCcCeE
Q 017873          183 INQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF----EIDTHNI  258 (365)
Q Consensus       183 ~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~----gi~v~~v  258 (365)
                       .+                                 +.  ..+.+++||+|+..++..+.++++.++..    ++++.|+
T Consensus       182 -~a---------------------------------l~--aAd~viIvt~~e~~Al~~~~~l~~~i~~~~~~~~~~l~Gi  225 (314)
T 3fwy_A          182 -AP---------------------------------LQ--HADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGC  225 (314)
T ss_dssp             -GG---------------------------------GG--TCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEE
T ss_pred             -hH---------------------------------Hh--hCCeEEEEeCCcHHHHHHHHHHHHHHHHHhccCCCceEEE
Confidence             00                                 11  13589999999999999999998888753    5677899


Q ss_pred             EEcCc
Q 017873          259 IINQV  263 (365)
Q Consensus       259 VvN~~  263 (365)
                      |+|+.
T Consensus       226 I~n~~  230 (314)
T 3fwy_A          226 VANRS  230 (314)
T ss_dssp             EEESC
T ss_pred             EEcCC
Confidence            99988

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=99.86  E-value=1.7e-21  Score=179.94  Aligned_cols=55  Identities=33%  Similarity=0.475  Sum_probs=48.5

Q ss_pred             hcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873           23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (365)
Q Consensus        23 ~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~   77 (365)
                      ..++++.|+|+|+||||||||+|+|||.+||++|+||++||+|++++++.+|+..
T Consensus         2 ~~~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~l~~~   56 (257)
T 1wcv_1            2 LRAKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVR   56 (257)
T ss_dssp             ---CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHTTCC
T ss_pred             CCCCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcCHHHHhCCC
Confidence            3455677889999999999999999999999999999999999999999888865

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=99.86  E-value=4.5e-21  Score=180.68  Aligned_cols=175  Identities=21%  Similarity=0.243  Sum_probs=113.5

Q ss_pred             hhHHhhhcCCCeEEEEEe--CCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCC-c--eeec-----
Q 017873           17 GSVRNILEQDSLKWVFVG--GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKT-P--TLVN-----   86 (365)
Q Consensus        17 ~~l~~~~~~~~~~i~~~s--gKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~-~--~~~~-----   86 (365)
                      ..+++++..+++.|+|++  +||||||||+|+|||.+|+++|+||++||+|++++++.+++...+.. +  ....     
T Consensus        24 ~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~  103 (298)
T 2oze_A           24 EELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNG  103 (298)
T ss_dssp             HHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHT
T ss_pred             HHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcC
Confidence            345555555567788888  89999999999999999999999999999999998887775432211 0  0000     


Q ss_pred             --------CcCCceeeecCcccccccccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHh
Q 017873           87 --------GFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRL  158 (365)
Q Consensus        87 --------~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~  158 (365)
                              ..+|++++....          .+.. ...+...+........+.++++.++. +||||||||||+.+....
T Consensus       104 ~~~~~~~~~~~~l~vlp~~~----------~~~~-~~~l~~~~~~~~~~~~l~~~l~~l~~-~yD~IiiD~pp~~~~~~~  171 (298)
T 2oze_A          104 NLASSIVHLTDNLDLIPGTF----------DLML-LPKLTRSWTFENESRLLATLLAPLKS-DYDLIIIDTVPTPSVYTN  171 (298)
T ss_dssp             CCGGGCEESSSSEEEECCCG----------GGGG-HHHHTTTSCHHHHHTHHHHHHGGGGG-GCSEEEEEECSSCSHHHH
T ss_pred             ChhhhhcccCCCeEEEeCCc----------hHHH-HHHHhhhhccccHHHHHHHHHHHHhc-CCCEEEEECCCCccHHHH
Confidence                    001222111100          0000 01111000001112346667776665 799999999998764321


Q ss_pred             hhchHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchH
Q 017873          159 LQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSL  238 (365)
Q Consensus       159 l~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~  238 (365)
                      ..                         +                               ..    .+.+++|+.|+..++
T Consensus       172 ~~-------------------------l-------------------------------~~----aD~viiv~~~~~~s~  191 (298)
T 2oze_A          172 NA-------------------------I-------------------------------VA----SDYVMIPLQAEEEST  191 (298)
T ss_dssp             HH-------------------------H-------------------------------HH----CSEEEEEECGGGCCH
T ss_pred             HH-------------------------H-------------------------------HH----CCeEEEEecCcHHHH
Confidence            10                         0                               01    247899999999999


Q ss_pred             HHHHHHHHHHHh------CCCCcCeEEEcCc
Q 017873          239 YETERLVQELTK------FEIDTHNIIINQV  263 (365)
Q Consensus       239 ~et~~~~~~L~~------~gi~v~~vVvN~~  263 (365)
                      ..+.++++.+..      .++++.|+|+|++
T Consensus       192 ~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~  222 (298)
T 2oze_A          192 NNIQNYISYLIDLQEQFNPGLDMIGFVPYLV  222 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEEEEEEES
T ss_pred             HHHHHHHHHHHHHHHHhCCCCeEEEEEEEEE
Confidence            999999988876      3788899999999

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=99.86  E-value=1.8e-21  Score=180.46  Aligned_cols=189  Identities=19%  Similarity=0.184  Sum_probs=107.4

Q ss_pred             hhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcC
Q 017873           10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFS   89 (365)
Q Consensus        10 ~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~   89 (365)
                      +-.+....++..|-.++++.|+|+|+||||||||+|+|||.+|| +|+||++||+|+++++..+++........... ..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~-~~   87 (267)
T 3k9g_A           10 GTLEAQTQGPGSMDNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFT-KF   87 (267)
T ss_dssp             ----------------CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTT-TS
T ss_pred             cchhhhhcCcccCCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcc-cc
Confidence            34556677788888888888999999999999999999999999 99999999999999988887643210000000 00


Q ss_pred             Ccee---eecCcccccccccccCccchh-----HHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhc
Q 017873           90 NLYA---MEVDPSVEEETGSTEGMDSLF-----SELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF  161 (365)
Q Consensus        90 ~l~~---~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~l  161 (365)
                      ++.-   ...+....+ .....++..+.     ......... .....+..+++.++. .||||||||||+.+.....  
T Consensus        88 ~l~~~l~~~~~~~~~i-~~~~~~l~~lp~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~-~yD~viiD~pp~~~~~~~~--  162 (267)
T 3k9g_A           88 NIYEILKENVDIDSTI-INVDNNLDLIPSYLTLHNFSEDKIE-HKDFLLKTSLGTLYY-KYDYIVIDTNPSLDVTLKN--  162 (267)
T ss_dssp             SHHHHHTTSSCGGGGC-EEEETTEEEECCCGGGGGTTTCCCT-TGGGHHHHHHHTTCT-TCSEEEEEECSSCSHHHHH--
T ss_pred             cHHHHhcCCCCHHHhh-ccCCCCEEEEeCChHHHHHHHhhhh-hHHHHHHHHHHHhhc-CCCEEEEECcCCccHHHHH--
Confidence            1100   000000000 00001111000     000000000 011246666666665 7999999999976542211  


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHH
Q 017873          162 PSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYET  241 (365)
Q Consensus       162 p~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et  241 (365)
                                                                              .+..  .+.+++|+.|+..++..+
T Consensus       163 --------------------------------------------------------~l~~--aD~vivv~~~~~~s~~~~  184 (267)
T 3k9g_A          163 --------------------------------------------------------ALLC--SDYVIIPMTAEKWAVESL  184 (267)
T ss_dssp             --------------------------------------------------------HHTT--CSEEEEEEESCTTHHHHH
T ss_pred             --------------------------------------------------------HHHH--CCeEEEEeCCChHHHHHH
Confidence                                                                    0111  358999999999999999


Q ss_pred             HHHHHHHHhCCCCc-CeEEEcCc
Q 017873          242 ERLVQELTKFEIDT-HNIIINQV  263 (365)
Q Consensus       242 ~~~~~~L~~~gi~v-~~vVvN~~  263 (365)
                      .++++.++..+..+ .++|+|++
T Consensus       185 ~~~~~~l~~~~~~~~~~vv~N~~  207 (267)
T 3k9g_A          185 DLFNFFVRKLNLFLPIFLIITRF  207 (267)
T ss_dssp             HHHHHHHHTTTCCCCEEEEEEEE
T ss_pred             HHHHHHHHHHhccCCEEEEEecc
Confidence            99999999886532 36999999

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=99.86  E-value=1.5e-21  Score=178.22  Aligned_cols=168  Identities=16%  Similarity=0.239  Sum_probs=109.4

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCccccc-
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-  102 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-  102 (365)
                      +++.|+|+|+||||||||+|+|||.+||++ |+||++||+|++ ++++.+|+..... ...    ..+........... 
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~-~~l----~~~l~~~~~~~~~~~   77 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHS-QDL----ADISNASDRLDKSLL   77 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCS-CCH----HHHHHTGGGCCHHHH
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCC-CCH----HHHHhhHhhhhHHHH
Confidence            466788999999999999999999999998 999999999999 9999998522110 000    00000000000000 


Q ss_pred             -c--cccccCccchhHHhhhcCCCHHH-----HHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHH
Q 017873          103 -E--TGSTEGMDSLFSELANAIPGIDE-----AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMS  174 (365)
Q Consensus       103 -~--~~~~~~~~~~~~~~~~~~pg~~~-----~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~  174 (365)
                       .  .....++..+.     ..+....     ...+.++++.+++ .||||||||||+.+.....               
T Consensus        78 ~~~~~~~~~~l~~l~-----~~~~~~~~~~~~~~~l~~~l~~l~~-~yD~viiD~p~~~~~~~~~---------------  136 (245)
T 3ea0_A           78 DTMVQHISPSLDLIP-----SPATFEKIVNIEPERVSDLIHIAAS-FYDYIIVDFGASIDHVGVW---------------  136 (245)
T ss_dssp             HHHSEEEETTEEEEC-----CCSSHHHHHHCCHHHHHHHHHHHHH-HCSEEEEEEESSCCTTHHH---------------
T ss_pred             HHHhEecCCCeEEEc-----CCCChHhhhcCCHHHHHHHHHHHHh-hCCEEEEeCCCCCchHHHH---------------
Confidence             0  00001111000     0011110     1256777777776 6999999999976532111               


Q ss_pred             HHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCC--
Q 017873          175 LKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE--  252 (365)
Q Consensus       175 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~g--  252 (365)
                                                                 .+.  ..+.+++|+.|+..++..+.++++.++..+  
T Consensus       137 -------------------------------------------~l~--~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~  171 (245)
T 3ea0_A          137 -------------------------------------------VLE--HLDELCIVTTPSLQSLRRAGQLLKLCKEFEKP  171 (245)
T ss_dssp             -------------------------------------------HGG--GCSEEEEEECSSHHHHHHHHHHHHHHHTCSSC
T ss_pred             -------------------------------------------HHH--HCCEEEEEecCcHHHHHHHHHHHHHHHHhCCC
Confidence                                                       011  135789999999999999999999999888  


Q ss_pred             CCcCeEEEcCcc
Q 017873          253 IDTHNIIINQVL  264 (365)
Q Consensus       253 i~v~~vVvN~~~  264 (365)
                      ....++|+|++.
T Consensus       172 ~~~~~~v~N~~~  183 (245)
T 3ea0_A          172 ISRIEIILNRAD  183 (245)
T ss_dssp             CSCEEEEEESTT
T ss_pred             ccceEEEEecCC
Confidence            566899999993

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=99.85  E-value=8.8e-21  Score=168.35  Aligned_cols=134  Identities=16%  Similarity=0.203  Sum_probs=102.8

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCcccccccccc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST  107 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  107 (365)
                      +.|+|+|+||||||||+|+|||..++++|+||++||+||+++++.+++...          .++.+...           
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~----------~~~~~~~~-----------   60 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGK----------AAFDVFTA-----------   60 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSC----------CSSEEEEC-----------
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCC----------CCCcEEec-----------
Confidence            567799999999999999999999999999999999999999999987432          22222221           


Q ss_pred             cCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHHH
Q 017873          108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMT  187 (365)
Q Consensus       108 ~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~~  187 (365)
                                    +.    ..+..+++.+++ +||||||||||+.+.....                         .+ 
T Consensus        61 --------------~~----~~l~~~l~~l~~-~yD~viiD~~~~~~~~~~~-------------------------~l-   95 (206)
T 4dzz_A           61 --------------AS----EKDVYGIRKDLA-DYDFAIVDGAGSLSVITSA-------------------------AV-   95 (206)
T ss_dssp             --------------CS----HHHHHTHHHHTT-TSSEEEEECCSSSSHHHHH-------------------------HH-
T ss_pred             --------------Cc----HHHHHHHHHhcC-CCCEEEEECCCCCCHHHHH-------------------------HH-
Confidence                          01    245566666666 6999999999976432111                         00 


Q ss_pred             hhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCC-----CCcCeEEEcC
Q 017873          188 RLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE-----IDTHNIIINQ  262 (365)
Q Consensus       188 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~g-----i~v~~vVvN~  262 (365)
                                                    ..    .+.+++|+.|+..+ ..+.++++.++..+     +++ ++|+|+
T Consensus        96 ------------------------------~~----ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~-~vv~N~  139 (206)
T 4dzz_A           96 ------------------------------MV----SDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEA-RFLITR  139 (206)
T ss_dssp             ------------------------------HH----CSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEE-EEEECS
T ss_pred             ------------------------------HH----CCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcE-EEEEec
Confidence                                          01    24789999999999 99999999998764     566 999999


Q ss_pred             c
Q 017873          263 V  263 (365)
Q Consensus       263 ~  263 (365)
                      +
T Consensus       140 ~  140 (206)
T 4dzz_A          140 K  140 (206)
T ss_dssp             B
T ss_pred             c
Confidence            9

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=99.85  E-value=1.7e-20  Score=173.32  Aligned_cols=167  Identities=17%  Similarity=0.187  Sum_probs=109.7

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC-CCChhhHhhcccCCCceeecCcCCceeeecCcccccccc
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETG  105 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~-~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  105 (365)
                      ++.|+|+|+||||||||+|+|||.+|+++|+||++||+|+ +++++.+|+..... ..    +..+.....+....+ ..
T Consensus         2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~-~~----l~~~l~~~~~~~~~i-~~   75 (263)
T 1hyq_A            2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLP-VT----LQNVLAGEARIDEAI-YV   75 (263)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCC-CC----HHHHHTTSSCGGGGC-EE
T ss_pred             CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCC-CC----HHHHHcCCCcHHHhh-ee
Confidence            3578899999999999999999999999999999999998 58999999875321 00    001100001111111 00


Q ss_pred             cccCccchhHHhhhcCCCHHH---HHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhh
Q 017873          106 STEGMDSLFSELANAIPGIDE---AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGM  182 (365)
Q Consensus       106 ~~~~~~~~~~~~~~~~pg~~~---~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~  182 (365)
                      ...++..+.   ........+   ...+..+++.++. +||||||||||+.+.....                       
T Consensus        76 ~~~~l~~lp---~~~~~~~~~~~~~~~l~~~l~~l~~-~yD~viiD~~~~~~~~~~~-----------------------  128 (263)
T 1hyq_A           76 GPGGVKVVP---AGVSLEGLRKANPEKLEDVLTQIME-STDILLLDAPAGLERSAVI-----------------------  128 (263)
T ss_dssp             CGGGCEEEE---CCSCHHHHHHHCHHHHHHHHHHHHH-TCSEEEEECCSSSSHHHHH-----------------------
T ss_pred             CCCCeEEEc---CCCCcChhhccChHHHHHHHHHHHh-hCCEEEEeCCCCCChHHHH-----------------------
Confidence            001111110   000000000   2345666777776 7999999999976521111                       


Q ss_pred             HHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcC
Q 017873          183 INQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQ  262 (365)
Q Consensus       183 ~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~  262 (365)
                        .+                               ..    .+.+++|+.|+..++..+.++++.++..++++.++|+|+
T Consensus       129 --~~-------------------------------~~----ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~  171 (263)
T 1hyq_A          129 --AI-------------------------------AA----AQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNR  171 (263)
T ss_dssp             --HH-------------------------------HH----SSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEE
T ss_pred             --HH-------------------------------HH----CCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEcc
Confidence              00                               01    247899999999999999999999998899999999999


Q ss_pred             c
Q 017873          263 V  263 (365)
Q Consensus       263 ~  263 (365)
                      +
T Consensus       172 ~  172 (263)
T 1hyq_A          172 I  172 (263)
T ss_dssp             E
T ss_pred             C
Confidence            9

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=99.84  E-value=2.1e-20  Score=181.39  Aligned_cols=50  Identities=32%  Similarity=0.395  Sum_probs=45.8

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhc
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ   76 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~   76 (365)
                      ++.|+|+|+||||||||+|+|||.+||+.|+|||+||+|++++++..|..
T Consensus         1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~~l~~   50 (361)
T 3pg5_A            1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLMLT   50 (361)
T ss_dssp             CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHHHHSC
T ss_pred             CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhhhhcC
Confidence            35788999999999999999999999999999999999999998887743

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=99.84  E-value=2.2e-20  Score=169.70  Aligned_cols=168  Identities=20%  Similarity=0.165  Sum_probs=109.2

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCcccccccc
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETG  105 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  105 (365)
                      ++.|+|+|+||||||||+|+|||.+|+++|+||++||+|++ ++++.+|+.+... ..    +..+.....+....+ ..
T Consensus         2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~-~~----l~~~l~~~~~~~~~i-~~   75 (237)
T 1g3q_A            2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPD-VT----LHDVLAGEANVEDAI-YM   75 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCS-SC----HHHHHTTSSCGGGGC-EE
T ss_pred             ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCC-CC----HHHHhcCCCCHHHHh-hc
Confidence            35788999999999999999999999999999999999985 8999998865321 00    000100001111111 00


Q ss_pred             cc-cCccchhHHhhhcCCCHHH---HHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhh
Q 017873          106 ST-EGMDSLFSELANAIPGIDE---AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG  181 (365)
Q Consensus       106 ~~-~~~~~~~~~~~~~~pg~~~---~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~  181 (365)
                      .. .++..+.   ........+   ...+.++++.++. +||||||||||+.+.....                      
T Consensus        76 ~~~~~l~~lp---~~~~~~~~~~~~~~~l~~~l~~l~~-~yD~viiD~~~~~~~~~~~----------------------  129 (237)
T 1g3q_A           76 TQFDNVYVLP---GAVDWEHVLKADPRKLPEVIKSLKD-KFDFILIDCPAGLQLDAMS----------------------  129 (237)
T ss_dssp             CSSTTEEEEC---CCCSHHHHHHCCGGGHHHHHHTTGG-GCSEEEEECCSSSSHHHHH----------------------
T ss_pred             CCCCCEEEEe---CCCccchhhhcCHHHHHHHHHHHHh-cCCEEEEECCCCcCHHHHH----------------------
Confidence            00 1111000   000000000   1235566666665 7999999999976521100                      


Q ss_pred             hHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEc
Q 017873          182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN  261 (365)
Q Consensus       182 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN  261 (365)
                                                          .+.  ..+.+++|+.|+..++..+.++++.+++.|+++.++|+|
T Consensus       130 ------------------------------------~~~--~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N  171 (237)
T 1g3q_A          130 ------------------------------------AML--SGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLN  171 (237)
T ss_dssp             ------------------------------------HHT--TCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ------------------------------------HHH--HCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEe
Confidence                                                011  135799999999999999999999999999999999999


Q ss_pred             Ccc
Q 017873          262 QVL  264 (365)
Q Consensus       262 ~~~  264 (365)
                      ++.
T Consensus       172 ~~~  174 (237)
T 1g3q_A          172 RYG  174 (237)
T ss_dssp             EET
T ss_pred             cCC
Confidence            993

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=99.84  E-value=5e-20  Score=180.86  Aligned_cols=52  Identities=21%  Similarity=0.307  Sum_probs=47.7

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCCCChhhHhhcc
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPAHNLSDAFQQR   77 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~~~l~~~~~~~   77 (365)
                      .++.|+|+|+||||||||+|+|||.+||.      .|+|||+||+|++++++.+|+..
T Consensus       107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~l~~~l~~~  164 (398)
T 3ez2_A          107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHK  164 (398)
T ss_dssp             SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCHHHHHHSCH
T ss_pred             CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhHHhCCc
Confidence            45678899999999999999999999994      79999999999999999999865

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=99.83  E-value=6.8e-20  Score=168.58  Aligned_cols=172  Identities=20%  Similarity=0.184  Sum_probs=108.4

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC-CCChhhHhhcccCCCceeecCcCCceeeecCccccc-cc
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET  104 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~-~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~~  104 (365)
                      ++.|+|+|+||||||||+|+|||.+|+++|+||++||+|+ +++++.+||.+.......    ..+.....+....+ ..
T Consensus         2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l----~~~l~~~~~~~~~~~~~   77 (260)
T 3q9l_A            2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDF----VNVIQGDATLNQALIKD   77 (260)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCH----HHHHTTSSCHHHHCEEC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCH----HHHhcCCCChHHheecc
Confidence            3567899999999999999999999999999999999998 699999998753211000    00000000000000 00


Q ss_pred             ccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHH
Q 017873          105 GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMIN  184 (365)
Q Consensus       105 ~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~  184 (365)
                      ....++..+...... .........+.++++.+++..||||||||||+.+.....                         
T Consensus        78 ~~~~~l~~lp~~~~~-~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~~~~~-------------------------  131 (260)
T 3q9l_A           78 KRTENLYILPASQTR-DKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALM-------------------------  131 (260)
T ss_dssp             SSSTTEEEECCCSCC-CTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSHHHHH-------------------------
T ss_pred             CCCCCEEEecCCCcc-chhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCHHHHH-------------------------
Confidence            000111100000000 000011124667777777635999999999976532111                         


Q ss_pred             HHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCC--------CcC
Q 017873          185 QMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEI--------DTH  256 (365)
Q Consensus       185 ~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi--------~v~  256 (365)
                                                       .+.  ..+.+++|+.|+..++..+.++++.+...+.        ...
T Consensus       132 ---------------------------------~l~--~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~  176 (260)
T 3q9l_A          132 ---------------------------------ALY--FADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKE  176 (260)
T ss_dssp             ---------------------------------HHH--TCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEE
T ss_pred             ---------------------------------HHH--hCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcce
Confidence                                             000  1357899999999999999999999997763        467


Q ss_pred             eEEEcCc
Q 017873          257 NIIINQV  263 (365)
Q Consensus       257 ~vVvN~~  263 (365)
                      ++|+|++
T Consensus       177 ~~v~N~~  183 (260)
T 3q9l_A          177 HLLLTRY  183 (260)
T ss_dssp             EEEEEEE
T ss_pred             EEEEecC
Confidence            9999999

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=99.82  E-value=1.7e-19  Score=169.22  Aligned_cols=48  Identities=31%  Similarity=0.486  Sum_probs=42.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ   76 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~   76 (365)
                      +.|+| |+||||||||+|+|||.+||++|+||++||+|++.+...++..
T Consensus         3 kvIav-s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~   50 (289)
T 2afh_E            3 RQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILH   50 (289)
T ss_dssp             EEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHC
T ss_pred             eEEEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcC
Confidence            44556 7899999999999999999999999999999999887777653

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=99.81  E-value=2.7e-19  Score=165.83  Aligned_cols=47  Identities=23%  Similarity=0.425  Sum_probs=41.8

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhh
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ   75 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~   75 (365)
                      +.|+| |+||||||||+|+|||.+||++|+||++||+|++.+...++.
T Consensus         2 ~vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~   48 (269)
T 1cp2_A            2 RQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLL   48 (269)
T ss_dssp             EEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHH
T ss_pred             cEEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhc
Confidence            44556 799999999999999999999999999999999988776665

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=99.81  E-value=1.1e-19  Score=178.85  Aligned_cols=54  Identities=24%  Similarity=0.301  Sum_probs=38.2

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHH------HCCCCEEEEeCCCCCChhhHhhccc
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLA------EVRPSVLIISTDPAHNLSDAFQQRF   78 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la------~~G~rVLLiD~D~~~~l~~~~~~~~   78 (365)
                      .+++.|+|+|+||||||||+|+|||.+||      +.|+||++||+|++++++.+|+...
T Consensus       109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~~l~~~l~~~~  168 (403)
T 3ez9_A          109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTH  168 (403)
T ss_dssp             CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSSGGGSCC----
T ss_pred             CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhhhhCCCc
Confidence            35667889999999999999999999999      6899999999999999998888653

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=99.78  E-value=7.2e-19  Score=157.68  Aligned_cols=128  Identities=22%  Similarity=0.204  Sum_probs=96.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCcccccccccc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST  107 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  107 (365)
                      +.|+|+|+||||||||+|+|||.+|+++| ||++||+|++.+++.+++.  ..       ++. .+.             
T Consensus         1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~--~~-------l~~-~vi-------------   56 (209)
T 3cwq_A            1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKR--GS-------LPF-KVV-------------   56 (209)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHH--SC-------CSS-EEE-------------
T ss_pred             CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcC--CC-------CCc-cee-------------
Confidence            46889999999999999999999999999 9999999999999998885  10       010 000             


Q ss_pred             cCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCC-hhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHH
Q 017873          108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPT-GHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM  186 (365)
Q Consensus       108 ~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~-~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~  186 (365)
                                    ++.        .++.+.. .||||||||||+ .+.....                           
T Consensus        57 --------------~~~--------~l~~l~~-~yD~viiD~p~~~~~~~~~~---------------------------   86 (209)
T 3cwq_A           57 --------------DER--------QAAKYAP-KYQNIVIDTQARPEDEDLEA---------------------------   86 (209)
T ss_dssp             --------------EGG--------GHHHHGG-GCSEEEEEEECCCSSSHHHH---------------------------
T ss_pred             --------------CHH--------HHHHhhh-cCCEEEEeCCCCcCcHHHHH---------------------------
Confidence                          000        2333444 699999999997 4421100                           


Q ss_pred             HhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC-CCCcCeEEEcCc
Q 017873          187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF-EIDTHNIIINQV  263 (365)
Q Consensus       187 ~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~-gi~v~~vVvN~~  263 (365)
                                                     .+.  ..+.+++|+.|+..++..+.++++.++.. +.+ .++|+|++
T Consensus        87 -------------------------------~l~--~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~  130 (209)
T 3cwq_A           87 -------------------------------LAD--GCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTII  130 (209)
T ss_dssp             -------------------------------HHH--TSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSB
T ss_pred             -------------------------------HHH--HCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEec
Confidence                                           000  12478999999999999999999999985 666 68999999

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=99.77  E-value=1.8e-18  Score=168.43  Aligned_cols=54  Identities=22%  Similarity=0.276  Sum_probs=49.0

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhccc
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRF   78 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~   78 (365)
                      ++++.|+|+|+||||||||+|+|||.+||++|+||++||+|+.++++.+||.+.
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~~lg~~~  194 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEG  194 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCCSC
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHcCCCC
Confidence            356678899999999999999999999999999999999998899999998653

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=99.76  E-value=6.7e-19  Score=165.26  Aligned_cols=50  Identities=28%  Similarity=0.274  Sum_probs=46.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC-CCChhhHhhcc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQR   77 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~-~~~l~~~~~~~   77 (365)
                      +.|+|+|+||||||||+|+|||.+|+++|+||++||+|+ +++++.+|+..
T Consensus         5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~   55 (286)
T 2xj4_A            5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENR   55 (286)
T ss_dssp             EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHH
T ss_pred             eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCC
Confidence            467799999999999999999999999999999999999 99999999865

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=99.72  E-value=1.2e-16  Score=143.72  Aligned_cols=202  Identities=12%  Similarity=0.085  Sum_probs=109.0

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCcc-cccc-cc
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPS-VEEE-TG  105 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-~~~~-~~  105 (365)
                      +.|+|+|+||||||||+|+|||.+|+++|+||+++|  |+.+-....  +.+........+....  ..... .... +.
T Consensus         2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d--p~~~~~~~~--~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~   75 (224)
T 1byi_A            2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK--PVASGSEKT--PEGLRNSDALALQRNS--SLQLDYATVNPYT   75 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESCBCC--TTSCBCHHHHHHHHTC--SSCCCHHHHCSEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc--ceecCCccC--CCCcChHHHHHHHHHh--CCCCChhhcccEE
Confidence            568899999999999999999999999999999975  432111000  0000000000000000  00000 0000 00


Q ss_pred             cccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhH-HH-hhhchHHHHHHHHHHHHHHHhhhhhH
Q 017873          106 STEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHT-LR-LLQFPSTLEKGLDKMMSLKNKFGGMI  183 (365)
Q Consensus       106 ~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~-l~-~l~lp~~l~~~l~~~~~~~~~~~~~~  183 (365)
                      -...............+.  ....+.+.++.+++ +||||||||||+.+. +. .+...                     
T Consensus        76 ~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~l~~-~yD~viID~p~~l~~p~~~~~~~~---------------------  131 (224)
T 1byi_A           76 FAEPTSPHIISAQEGRPI--ESLVMSAGLRALEQ-QADWVLVEGAGGWFTPLSDTFTFA---------------------  131 (224)
T ss_dssp             ESSCSCHHHHHHHHTCCC--CHHHHHHHHHHHHT-TCSEEEEECSSSTTCEEETTEEHH---------------------
T ss_pred             eCCCCCHHHHHHHcCCCC--CHHHHHHHHHHHHH-hCCEEEEEcCCccccCCCcchhHH---------------------
Confidence            000000000000000011  11345566666666 799999999997652 10 00000                     


Q ss_pred             HHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       184 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                       .+.                             ..+.    ..+++|+.++..++.++.+.++.++..++++.|+|+|++
T Consensus       132 -~l~-----------------------------~~~~----~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~  177 (224)
T 1byi_A          132 -DWV-----------------------------TQEQ----LPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDV  177 (224)
T ss_dssp             -HHH-----------------------------HHHT----CCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred             -HHH-----------------------------HHhC----CCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence             000                             0111    247889999999999999999999999999999999999


Q ss_pred             cCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCC
Q 017873          264 LYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLP  305 (365)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~  305 (365)
                       .+...           .+...++.+.+.++...+..+|...
T Consensus       178 -~~~~~-----------~~~~~~~~l~~~~~~~vl~~Ip~~~  207 (224)
T 1byi_A          178 -TPPGK-----------RHAEYMTTLTRMIPAPLLGEIPWLA  207 (224)
T ss_dssp             -SSCCT-----------THHHHHHHHHHHSSSCEEEEECCCT
T ss_pred             -CCchh-----------hHHHHHHHHHHHcCCCEEEECCCCc
Confidence             33210           1233455566656432344577765

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=99.52  E-value=1.4e-13  Score=136.20  Aligned_cols=43  Identities=33%  Similarity=0.404  Sum_probs=37.6

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCCCCh
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHNL   70 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~~~l   70 (365)
                      .+++.+.|+||+||||++++||.+++++ |+||++||+|++.+.
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~  143 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPA  143 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence            4555555899999999999999999998 999999999998553

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=99.42  E-value=2.8e-12  Score=120.91  Aligned_cols=44  Identities=20%  Similarity=0.209  Sum_probs=38.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~   71 (365)
                      ..++.+.|++|+||||++.++|..++..|++|+++|+|++.+..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a  141 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAA  141 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHH
Confidence            44666669999999999999999999999999999999886643

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=99.38  E-value=1.9e-11  Score=116.35  Aligned_cols=42  Identities=31%  Similarity=0.373  Sum_probs=35.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      ..++.+.|.+|+||||++++||..++..|++|+++|+|+...
T Consensus       105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~  146 (320)
T 1zu4_A          105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRA  146 (320)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence            344544467999999999999999999999999999998654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.35  E-value=9.8e-11  Score=107.29  Aligned_cols=44  Identities=23%  Similarity=0.178  Sum_probs=39.8

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~   71 (365)
                      ...+++++|||||||||++.++|.+++ .|+||++||+|++.+..
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~   56 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKEL   56 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCC
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCcccc
Confidence            346789999999999999999999999 99999999999986643

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.33  E-value=8.1e-12  Score=117.61  Aligned_cols=44  Identities=25%  Similarity=0.416  Sum_probs=37.5

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~   71 (365)
                      +..++++ |++|+||||++.++|..++..|.+|+++|+|++.+..
T Consensus        98 ~~~i~i~-g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~  141 (295)
T 1ls1_A           98 RNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA  141 (295)
T ss_dssp             SEEEEEE-CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHH
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhH
Confidence            3344455 9999999999999999999999999999999886544

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=99.32  E-value=9.9e-12  Score=122.70  Aligned_cols=58  Identities=19%  Similarity=0.227  Sum_probs=45.0

Q ss_pred             hhcchhhHHhhhcC--------CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           12 LEIPEGSVRNILEQ--------DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        12 ~~~~~~~l~~~~~~--------~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      .+.++..|..++..        ....++++.|.+|+||||++++||.+++++|+||+++++|+...
T Consensus        76 ~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~  141 (443)
T 3dm5_A           76 IKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP  141 (443)
T ss_dssp             HHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred             HHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence            34444555555442        23567777888999999999999999999999999999998744

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=99.31  E-value=2e-11  Score=120.22  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=37.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~   71 (365)
                      ..++.+.|++|+||||++.+||.+++..|++|+++|+|++.+..
T Consensus        98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa  141 (425)
T 2ffh_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA  141 (425)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchh
Confidence            34555559999999999999999999999999999999876544

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=99.27  E-value=3.9e-10  Score=103.55  Aligned_cols=222  Identities=13%  Similarity=0.102  Sum_probs=118.8

Q ss_pred             cchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe-----CCCCCChhhHhhcccCCCceeecCc
Q 017873           14 IPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS-----TDPAHNLSDAFQQRFTKTPTLVNGF   88 (365)
Q Consensus        14 ~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD-----~D~~~~l~~~~~~~~~~~~~~~~~~   88 (365)
                      .+...|+.+..++++.|.+++...|+|||+++++|+.+|+++|+||..+=     +.+...-..++....+..+.     
T Consensus        13 ~~~~~~~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~g~~~~-----   87 (251)
T 3fgn_A           13 GLQGTENLYFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRLAGVTQL-----   87 (251)
T ss_dssp             ---------CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCHHHHHHHHHCCCEE-----
T ss_pred             hhhHHHHHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHHHHHHHHHcCCCCC-----
Confidence            45667888887776677788889999999999999999999999999874     21111111111111111000     


Q ss_pred             CCceeeecCcccccccccccCccchhHHhhhcC--CCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHH
Q 017873           89 SNLYAMEVDPSVEEETGSTEGMDSLFSELANAI--PGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLE  166 (365)
Q Consensus        89 ~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~  166 (365)
                      .+.+...            ..............  ...   ..+.+.++.+.+ +||+||||++++...-  +  .+.  
T Consensus        88 ~~~~~~~------------~p~sP~~aa~~~~~~~~~~---~~i~~~~~~l~~-~~D~vlIEGagGl~~p--l--~~~--  145 (251)
T 3fgn_A           88 AGLARYP------------QPMAPAAAAEHAGMALPAR---DQIVRLIADLDR-PGRLTLVEGAGGLLVE--L--AEP--  145 (251)
T ss_dssp             EEEEECS------------SSSCHHHHHHHTTCCCCCH---HHHHHHHHTTCC-TTCEEEEECSSSTTCE--E--ETT--
T ss_pred             CCCeeEC------------CCCChHHHHHHcCCCCCCH---HHHHHHHHHHHh-cCCEEEEECCCCCcCC--c--Ccc--
Confidence            0111000            00110000000011  111   123333333344 7999999999865310  0  000  


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHH
Q 017873          167 KGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ  246 (365)
Q Consensus       167 ~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~  246 (365)
                                              +    ..              ...+...+.    ..+++|+.++..++..+...++
T Consensus       146 ------------------------~----~~--------------~adla~~l~----~pVILV~~~~~g~i~~~~lt~~  179 (251)
T 3fgn_A          146 ------------------------G----VT--------------LRDVAVDVA----AAALVVVTADLGTLNHTKLTLE  179 (251)
T ss_dssp             ------------------------T----EE--------------HHHHHHHTT----CEEEEEECSSTTHHHHHHHHHH
T ss_pred             ------------------------c----ch--------------HHHHHHHcC----CCEEEEEcCCCccHHHHHHHHH
Confidence                                    0    00              000111233    3689999999999999999999


Q ss_pred             HHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEE-EecCCCCCCCCHHHHHHHHHhhcC
Q 017873          247 ELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHIT-KLPLLPEEVTGIEALKAFSQHFVT  323 (365)
Q Consensus       247 ~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~-~vp~~~~e~~g~~~L~~l~~~l~~  323 (365)
                      .+...|+++.|+|+|++. .+..  .        .+...++.|.+.   +|++ .+|..... ...+.+...+...+.
T Consensus       180 ~l~~~g~~i~GvIlN~v~-~~~~--~--------~~~~~~~~le~~---vpvLG~iP~~~~~-l~~~~~~~~~~~~~~  242 (251)
T 3fgn_A          180 ALAAQQVSCAGLVIGSWP-DPPG--L--------VAASNRSALARI---AMVRAALPAGAAS-LDAGDFAAMSAAAFD  242 (251)
T ss_dssp             HHHHTTCCEEEEEEEEEC-SSCC--H--------HHHHHHHHHHHH---SCEEEEEETTGGG-CCHHHHHHHHHHHSC
T ss_pred             HHHhCCCCEEEEEEECCC-Cchh--h--------hhhhHHHHHHHh---CCEEEEeeCCCCc-CCHHHHHHHHhcccc
Confidence            999999999999999993 2211  1        112223444443   5554 57887544 456777777776553

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.21  E-value=1.4e-10  Score=116.48  Aligned_cols=44  Identities=23%  Similarity=0.185  Sum_probs=37.2

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~   71 (365)
                      .+++.+.|.+||||||++.+||.++++.|+||++||+|+..+..
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa  144 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGA  144 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhH
Confidence            34555558899999999999999999999999999999875543

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=99.15  E-value=9.4e-10  Score=99.63  Aligned_cols=65  Identities=14%  Similarity=0.062  Sum_probs=48.3

Q ss_pred             EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEec
Q 017873          226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLP  302 (365)
Q Consensus       226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp  302 (365)
                      .+++|+.+...++..+...++.+...|+++.|+|+|++ .++..           .+...++.+.+.++...+-.+|
T Consensus       142 pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~-~~~~~-----------~~~~~~~~l~~~~g~pvLG~iP  206 (228)
T 3of5_A          142 PVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCN-DSNIK-----------YIDEQINTIEELSGYKCSAKIS  206 (228)
T ss_dssp             CEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEEC-CTTCS-----------CHHHHHHHHHHHHSCCCSEEEE
T ss_pred             CEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECc-CCcch-----------hhHHHHHHHHHhhCCCEEEECC
Confidence            47999999999999999999999999999999999999 33211           1122355566555444455677

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=99.13  E-value=2.7e-10  Score=102.51  Aligned_cols=49  Identities=18%  Similarity=0.100  Sum_probs=43.9

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhH
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA   73 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~   73 (365)
                      ++++..+|+++||||||||++.++|..++++|++|+++|+|++++...+
T Consensus         3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~   51 (228)
T 2r8r_A            3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETE   51 (228)
T ss_dssp             CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHH
Confidence            3566778999999999999999999999999999999999998877643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=99.12  E-value=4.6e-10  Score=110.72  Aligned_cols=41  Identities=22%  Similarity=0.230  Sum_probs=37.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      ..++++.|++|+||||++++||.+++..|++|+++|+|+..
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r  137 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR  137 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence            56777789999999999999999999999999999999753

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=99.08  E-value=1.9e-10  Score=113.67  Aligned_cols=41  Identities=22%  Similarity=0.281  Sum_probs=36.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      .++.+.|.+|+||||++++||..++++|+||+++|+|++.+
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~  140 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRP  140 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCc
Confidence            45555678999999999999999999999999999998754

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.08  E-value=2.6e-09  Score=100.90  Aligned_cols=41  Identities=27%  Similarity=0.352  Sum_probs=35.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      ..++.+.|.+|+||||++.++|..++..|.+|+++|+|...
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r  144 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR  144 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence            34555556799999999999999999999999999999764

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=99.04  E-value=6.6e-09  Score=94.83  Aligned_cols=38  Identities=13%  Similarity=0.057  Sum_probs=35.9

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|+.++..++..+...++.|...|++ .|+|+|++
T Consensus       162 ~pVILV~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v  199 (242)
T 3qxc_A          162 AKMLLISHDNLGLINDCLLNDFLLKSHQLD-YKIAINLK  199 (242)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCC
T ss_pred             CCEEEEEcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCC
Confidence            368999999999999999999999999999 99999999

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.00  E-value=7.1e-09  Score=97.46  Aligned_cols=40  Identities=28%  Similarity=0.373  Sum_probs=34.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAH   68 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~~   68 (365)
                      .++.+.|.+|+||||++.+||..++. .|++|+++|+|+..
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r  146 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR  146 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence            34544567999999999999999995 89999999999864

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.82  E-value=1.2e-08  Score=98.19  Aligned_cols=44  Identities=30%  Similarity=0.397  Sum_probs=35.8

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCCh
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL   70 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l   70 (365)
                      ...++.++|++|+||||++.+|+..++..|+||+++|+||+.+.
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~  121 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTR  121 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCc
Confidence            44566778999999999999999999999999999999988654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.27  E-value=1.6e-05  Score=79.22  Aligned_cols=40  Identities=28%  Similarity=0.325  Sum_probs=34.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      .++.+-|.+|+||||+...||..+...|.+|++.+.|...
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r  333 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR  333 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred             eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence            4666668899999999999999999888999999999754

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=98.16  E-value=1.4e-05  Score=70.23  Aligned_cols=38  Identities=18%  Similarity=0.100  Sum_probs=34.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .|++++|+| .||||.|..+|..++.+|+||+++-+...
T Consensus        30 ~i~v~tG~G-kGKTTaA~GlalRA~g~G~rV~~vQF~Kg   67 (196)
T 1g5t_A           30 IIIVFTGNG-KGKTTAAFGTAARAVGHGKNVGVVQFIKG   67 (196)
T ss_dssp             CEEEEESSS-SCHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             eEEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence            577888888 99999999999999999999999998874

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.09  E-value=1.4e-05  Score=76.39  Aligned_cols=43  Identities=28%  Similarity=0.373  Sum_probs=35.6

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCCh
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL   70 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l   70 (365)
                      ..++.+.|++|+||||+..+++..++..|.+|.+++.|++.+.
T Consensus        56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~   98 (341)
T 2p67_A           56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV   98 (341)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCC
Confidence            3455556799999999999999999999999999999997543

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=98.04  E-value=1.5e-05  Score=76.60  Aligned_cols=53  Identities=19%  Similarity=0.061  Sum_probs=43.1

Q ss_pred             hhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           16 EGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        16 ~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      .+.|+.++. ++  ...++.+.|++|+||||+|.++|..++..|.+|++||++...
T Consensus        48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~  103 (356)
T 1u94_A           48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL  103 (356)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            345888886 21  224777889999999999999999999999999999997543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.90  E-value=0.00017  Score=68.42  Aligned_cols=41  Identities=29%  Similarity=0.249  Sum_probs=36.5

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ...++.+.|.+|+||||+...+|..+...|.+|++++.|..
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~  168 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF  168 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence            34677777889999999999999999999999999999965

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.88  E-value=6.7e-05  Score=72.32  Aligned_cols=53  Identities=17%  Similarity=0.056  Sum_probs=42.8

Q ss_pred             hhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           16 EGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        16 ~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      .+.|+.++. ++  ...++.+.|.+|+||||++.++|..++..|.+|++||++...
T Consensus        59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~  114 (366)
T 1xp8_A           59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL  114 (366)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh
Confidence            456888886 21  123666679999999999999999999999999999999653

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.78  E-value=4.1e-05  Score=67.33  Aligned_cols=53  Identities=19%  Similarity=0.096  Sum_probs=40.8

Q ss_pred             hhhHHhhhcC--CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh
Q 017873           16 EGSVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (365)
Q Consensus        16 ~~~l~~~~~~--~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~   71 (365)
                      .+.|+.++.+  ..-.++.+.|++|+||||++.++|.   ..|.+|+++|++.+.+..
T Consensus         6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~~   60 (220)
T 2cvh_A            6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSPE   60 (220)
T ss_dssp             CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCHH
T ss_pred             cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCHH
Confidence            3467777752  2234788889999999999999998   568899999998754433

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.68  E-value=0.0014  Score=61.42  Aligned_cols=39  Identities=31%  Similarity=0.377  Sum_probs=34.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .++.+.|.+|+||||+...+|..+...|.+|++.+.|..
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~  141 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF  141 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence            355555899999999999999999988899999999965

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.62  E-value=0.00033  Score=62.50  Aligned_cols=52  Identities=19%  Similarity=0.179  Sum_probs=41.9

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.++  .-.++.+.|.+|+||||++.++|..++..|.+|++++++..
T Consensus         9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~   62 (247)
T 2dr3_A            9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH   62 (247)
T ss_dssp             CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence            34577776532  22467778899999999999999999999999999999864

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.61  E-value=0.00018  Score=68.87  Aligned_cols=52  Identities=17%  Similarity=0.041  Sum_probs=42.7

Q ss_pred             hhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           16 EGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+.|+.++. ++  .-.++.+.|.+|+||||++.++|..++..|.+|+++|++..
T Consensus        46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~  100 (349)
T 2zr9_A           46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA  100 (349)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            446888886 32  22467777999999999999999999999999999999854

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=97.57  E-value=0.0016  Score=62.03  Aligned_cols=37  Identities=16%  Similarity=0.045  Sum_probs=32.0

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      .+++.+++---.|||||++..|..++.++|.++..+-
T Consensus       152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~  188 (349)
T 2obn_A          152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLA  188 (349)
T ss_dssp             SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEe
Confidence            4567777778889999999999999999999999854

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=97.54  E-value=0.0049  Score=65.52  Aligned_cols=38  Identities=11%  Similarity=-0.023  Sum_probs=35.2

Q ss_pred             EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      -+++|+.....++..+.-.++.+...|+++.|||+|+.
T Consensus       233 PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~  270 (831)
T 4a0g_A          233 PGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDH  270 (831)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECC
T ss_pred             CEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence            47999999888999999999999999999999999988

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.48  E-value=0.00046  Score=64.98  Aligned_cols=54  Identities=7%  Similarity=-0.012  Sum_probs=41.9

Q ss_pred             hhhHHhhhc----CC-CeEEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEeCCCCCC
Q 017873           16 EGSVRNILE----QD-SLKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTDPAHN   69 (365)
Q Consensus        16 ~~~l~~~~~----~~-~~~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD~D~~~~   69 (365)
                      .+.|+.++.    ++ .+-++.+.|..|+||||++..++..+++.  |.+|+.||+.....
T Consensus        11 i~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~   71 (333)
T 3io5_A           11 IPMMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGIT   71 (333)
T ss_dssp             CHHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCC
T ss_pred             CHHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhh
Confidence            346777776    32 11257788899999999999999999876  88999999986543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.47  E-value=0.00072  Score=64.78  Aligned_cols=56  Identities=14%  Similarity=0.014  Sum_probs=44.8

Q ss_pred             cchhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           14 IPEGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        14 ~~~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      +=.+.|+.++. ++  .-.++.+.|..|+||||++.++|..++..|.+|+.||+.....
T Consensus        44 TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~  102 (356)
T 3hr8_A           44 TGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD  102 (356)
T ss_dssp             CSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc
Confidence            33456888887 32  1247777788999999999999999999999999999986544

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.45  E-value=0.00013  Score=64.48  Aligned_cols=52  Identities=21%  Similarity=0.120  Sum_probs=37.1

Q ss_pred             hhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           16 EGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        16 ~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      .+.++.+........+++.|.+||||||+..+++..+... +++..|+.|+..
T Consensus        26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~   77 (226)
T 2hf9_A           26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIA   77 (226)
T ss_dssp             HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTT
T ss_pred             HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCC
Confidence            3445555443333444444889999999999999887654 789999999863

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.37  E-value=0.0069  Score=58.02  Aligned_cols=41  Identities=27%  Similarity=0.275  Sum_probs=35.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      ..++.+-|.+|+||||+...+|..+...+.+|++.+.|...
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r  197 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR  197 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred             CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence            35666778999999999999999999888999999999653

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.30  E-value=0.0017  Score=61.82  Aligned_cols=52  Identities=19%  Similarity=0.188  Sum_probs=41.6

Q ss_pred             hhhHHhhhcC--CCeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~--~~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.+  ....++.+.|..|+||||++.++|...+.      .|.+|+.||++..
T Consensus       108 ~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~  167 (343)
T 1v5w_A          108 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT  167 (343)
T ss_dssp             CHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred             ChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence            3458888863  23357888899999999999999998654      5789999999864

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.30  E-value=0.00093  Score=63.01  Aligned_cols=52  Identities=19%  Similarity=0.169  Sum_probs=41.1

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHC------CCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~------G~rVLLiD~D~~   67 (365)
                      .+.|+.++.++  ...++.+.|.+|+||||++.++|...+..      |.+|+.||++..
T Consensus        93 ~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~  152 (324)
T 2z43_A           93 SQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT  152 (324)
T ss_dssp             CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred             chhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence            35688887532  22477788999999999999999987655      789999999864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.29  E-value=0.00033  Score=59.96  Aligned_cols=41  Identities=17%  Similarity=-0.039  Sum_probs=35.3

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+.++.++|..|+||||++..++..|..+|++|.+|..|+.
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~   43 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH   43 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence            35567777788999999999999999999999999999975

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.23  E-value=0.00034  Score=60.12  Aligned_cols=39  Identities=31%  Similarity=0.308  Sum_probs=34.9

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ...++++.|..|+||||++..||..+...|.+|.++|.|
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d   50 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD   50 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence            345777889999999999999999999999999999977

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.22  E-value=0.00073  Score=60.27  Aligned_cols=52  Identities=19%  Similarity=0.195  Sum_probs=40.9

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.++  .-.++++.|.+|+|||+++.++|...+ +.|.+|++++++..
T Consensus        16 i~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~   70 (251)
T 2zts_A           16 IPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER   70 (251)
T ss_dssp             CTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred             cHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence            34678888642  224778889999999999999998755 56899999999854

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.16  E-value=0.01  Score=55.47  Aligned_cols=40  Identities=28%  Similarity=0.301  Sum_probs=35.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      .++.+-|.+|+||||+...+|..+...+.+|++.+.|...
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r  140 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR  140 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            4666778999999999999999999888999999999653

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.15  E-value=0.00097  Score=59.29  Aligned_cols=52  Identities=15%  Similarity=0.118  Sum_probs=39.6

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.+.  .-.++.+.|.+|+||||++..+|...+.      .+.+|+.++++..
T Consensus        10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~   69 (243)
T 1n0w_A           10 SKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT   69 (243)
T ss_dssp             CHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred             ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC
Confidence            45688888542  2247777899999999999999986543      3678999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.05  E-value=0.00044  Score=60.76  Aligned_cols=50  Identities=18%  Similarity=0.063  Sum_probs=37.7

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      ++..........+++.|.+|+||||+..+|+..+... ++|.+++.|+..+
T Consensus        21 ~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~   70 (221)
T 2wsm_A           21 NREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSK   70 (221)
T ss_dssp             HHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCH
T ss_pred             HHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCc
Confidence            3334433344566666899999999999999987655 8899999998643

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.99  E-value=0.0011  Score=75.68  Aligned_cols=56  Identities=18%  Similarity=0.069  Sum_probs=46.0

Q ss_pred             hhcchhhHHhhhc-C--CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           12 LEIPEGSVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        12 ~~~~~~~l~~~~~-~--~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      +.+-.+.|+.++. +  ...+++.+.|..|+|||++|.++|...+++|.+|+.+|++..
T Consensus      1408 isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A         1408 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp             ECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred             ccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence            3344556888987 3  134578888999999999999999999999999999999854

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.97  E-value=0.0036  Score=70.76  Aligned_cols=101  Identities=19%  Similarity=0.164  Sum_probs=71.7

Q ss_pred             hhhHHhhhcCCCe---EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC--hhhHhhcccCCCceeecCcCC
Q 017873           16 EGSVRNILEQDSL---KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN--LSDAFQQRFTKTPTLVNGFSN   90 (365)
Q Consensus        16 ~~~l~~~~~~~~~---~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~--l~~~~~~~~~~~~~~~~~~~~   90 (365)
                      ...|+.++..++.   +|+-+.|..|+||||+|.+++....++|.+++.||+..+.+  ....+|++.          .+
T Consensus      1416 ~~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~----------~~ 1485 (1706)
T 3cmw_A         1416 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDI----------DN 1485 (1706)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCG----------GG
T ss_pred             CHHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCH----------HH
Confidence            4468999985333   47777788999999999999999999999999999985533  344555442          22


Q ss_pred             ceeeecCcccccccccccCccchhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCCh
Q 017873           91 LYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTG  153 (365)
Q Consensus        91 l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~  153 (365)
                      +.+                          ..|...+ .++..+...++++..|+||||+-+.+
T Consensus      1486 l~~--------------------------~~p~~~e-~~l~~~~~~~~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A         1486 LLC--------------------------SQPDTGE-QALEICDALARSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp             CEE--------------------------ECCSSHH-HHHHHHHHHHHHTCCSEEEESCSTTC
T ss_pred             eEE--------------------------eCCCcHH-HHHHHHHHHHHcCCCCEEEEccHHhC
Confidence            221                          2243322 35666667778888999999987644

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.97  E-value=0.00075  Score=61.55  Aligned_cols=38  Identities=29%  Similarity=0.507  Sum_probs=34.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +.++++.|-+|+||||++..|+..|...|..++++|.|
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D   41 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD   41 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence            56788889999999999999999999899999888876

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.88  E-value=0.0012  Score=62.09  Aligned_cols=52  Identities=12%  Similarity=0.118  Sum_probs=42.5

Q ss_pred             hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.+ ..-.++++.|.+|+||||++.++|..++.+|.+|+.+++...
T Consensus        55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s  107 (315)
T 3bh0_A           55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG  107 (315)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred             hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence            4467777732 122478888999999999999999999999999999999843

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.86  E-value=0.0044  Score=70.05  Aligned_cols=54  Identities=19%  Similarity=0.073  Sum_probs=45.0

Q ss_pred             hhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           16 EGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        16 ~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      .+.|+.++. ++  .-.++.+.|.+|+||||++.++|...++.|.+|+.||++....
T Consensus       368 i~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~  424 (1706)
T 3cmw_A          368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD  424 (1706)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC
T ss_pred             cHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchH
Confidence            456888886 21  2347888899999999999999999999999999999996644

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.79  E-value=0.0012  Score=65.15  Aligned_cols=52  Identities=12%  Similarity=0.118  Sum_probs=42.9

Q ss_pred             hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.+ ..-.++++.|.+|+||||++.++|..++.+|.+|+++++.-.
T Consensus       184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms  236 (444)
T 3bgw_A          184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG  236 (444)
T ss_dssp             CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence            3467877742 122478888999999999999999999988999999999954

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.78  E-value=0.001  Score=56.82  Aligned_cols=38  Identities=29%  Similarity=0.291  Sum_probs=33.3

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      |+++++.|-.|+||||++..|+..+...|+++..++.|
T Consensus         1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~   38 (194)
T 1nks_A            1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG   38 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence            35778889999999999999999999889999888643

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.75  E-value=0.0013  Score=61.87  Aligned_cols=52  Identities=21%  Similarity=0.216  Sum_probs=40.2

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHH------------HCC----CCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLA------------EVR----PSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la------------~~G----~rVLLiD~D~~   67 (365)
                      .+.|+.++.++  ...++.+.|..|+||||++.++|...+            ..|    .+|+.||++..
T Consensus        84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~  153 (322)
T 2i1q_A           84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT  153 (322)
T ss_dssp             CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred             ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence            35688888532  235788889999999999999998753            245    79999999865

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.75  E-value=0.0015  Score=62.03  Aligned_cols=52  Identities=15%  Similarity=0.150  Sum_probs=42.9

Q ss_pred             hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.+ ..-.++++.|.+|+||||++.++|..++..|.+|+++++.-.
T Consensus        33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms   85 (338)
T 4a1f_A           33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS   85 (338)
T ss_dssp             CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            4567777752 222478888999999999999999999999999999999843

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.69  E-value=0.002  Score=56.75  Aligned_cols=49  Identities=14%  Similarity=0.216  Sum_probs=39.8

Q ss_pred             hhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        17 ~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..++.+........+++.|..|+||||++..+|..+...|.++..++++
T Consensus        41 ~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~   89 (242)
T 3bos_A           41 GALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG   89 (242)
T ss_dssp             HHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence            3455555554456678889999999999999999999889999999874

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.67  E-value=0.0023  Score=55.39  Aligned_cols=37  Identities=32%  Similarity=0.336  Sum_probs=32.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..+++.|.+|+||||++.+++..+...|.+++.+++.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~   91 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP   91 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence            5677789999999999999999999889999988763

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.64  E-value=0.0073  Score=57.52  Aligned_cols=42  Identities=24%  Similarity=0.331  Sum_probs=35.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      ..++.+.|.+|+||||+.-.|+..+...|.+|.++..||...
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~  115 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC  115 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence            456677799999999999999999988899999999998743

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.63  E-value=0.0025  Score=55.51  Aligned_cols=40  Identities=30%  Similarity=0.218  Sum_probs=35.3

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ...++.+.|..|+||||++..++..+...|.+|.+++.|.
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~   60 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD   60 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence            4467888899999999999999999988888999998884

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.58  E-value=0.0033  Score=61.18  Aligned_cols=52  Identities=15%  Similarity=0.105  Sum_probs=39.4

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.++  .-.++.+.|..|+||||++..++.....      .+.+|+.||+...
T Consensus       164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~  223 (400)
T 3lda_A          164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT  223 (400)
T ss_dssp             CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred             ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence            34688888542  2247778899999999999999877654      4578999999864

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.58  E-value=0.0058  Score=70.04  Aligned_cols=54  Identities=19%  Similarity=0.068  Sum_probs=44.8

Q ss_pred             hhhHHhhhc-C--CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           16 EGSVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        16 ~~~l~~~~~-~--~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      .+.|+.++. +  ..-.++.+.|.+|+||||++.++|..++..|.+|+.||+....+
T Consensus       368 ~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~  424 (2050)
T 3cmu_A          368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD  424 (2050)
T ss_dssp             CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC
T ss_pred             CHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHH
Confidence            456888886 2  12347888899999999999999999999999999999996544

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=96.56  E-value=0.015  Score=58.62  Aligned_cols=40  Identities=25%  Similarity=0.340  Sum_probs=34.9

Q ss_pred             eEEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           28 LKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        28 ~~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      +.|++++| -.|+|||+++++|+..|.++|+||..+=+||-
T Consensus         4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py   44 (545)
T 1s1m_A            4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPY   44 (545)
T ss_dssp             EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECC
T ss_pred             eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeecccc
Confidence            45666645 89999999999999999999999999999864

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.51  E-value=0.0036  Score=53.64  Aligned_cols=41  Identities=20%  Similarity=0.076  Sum_probs=36.6

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ++.++.++|..|+||||+...+...+...|++|..+..|+.
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~   45 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   45 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence            45677888999999999999999999999999999998875

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=96.47  E-value=0.02  Score=57.77  Aligned_cols=40  Identities=30%  Similarity=0.306  Sum_probs=34.5

Q ss_pred             eEEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           28 LKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        28 ~~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      +.|++++| -.|+|||+++++|+..|.++|+||..+=+||-
T Consensus        13 ~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py   53 (550)
T 1vco_A           13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPY   53 (550)
T ss_dssp             EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECS
T ss_pred             eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccc
Confidence            34556646 78999999999999999999999999999864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.46  E-value=0.0036  Score=54.90  Aligned_cols=52  Identities=13%  Similarity=0.125  Sum_probs=40.4

Q ss_pred             hhhHHhhhcC--CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~--~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.+  ..-.++.+.|.+|+||||++..++..++..|.+|++++.+..
T Consensus         9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~   62 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES   62 (235)
T ss_dssp             CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred             chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence            3456666642  112466778999999999999999988888889999999864

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.45  E-value=0.0022  Score=54.56  Aligned_cols=37  Identities=22%  Similarity=0.069  Sum_probs=31.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIIST   64 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~   64 (365)
                      ..++++.|..|+||||++..++..+. ..|.+|+.+++
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~   75 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT   75 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence            35667789999999999999999998 78888887664

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.45  E-value=0.012  Score=55.86  Aligned_cols=40  Identities=33%  Similarity=0.432  Sum_probs=35.1

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      -.++.+.|..|+||||+...++-.+...+.+|.++..|+.
T Consensus        55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~   94 (337)
T 2qm8_A           55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS   94 (337)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence            4566777999999999999999998888889999999974

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.34  E-value=0.0043  Score=61.07  Aligned_cols=52  Identities=13%  Similarity=0.074  Sum_probs=41.5

Q ss_pred             hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.+ ..-.++++.|.+|+||||++.++|...+. .|.+|+++++.-.
T Consensus       187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~  240 (444)
T 2q6t_A          187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP  240 (444)
T ss_dssp             CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC
T ss_pred             CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            3467777742 12247788899999999999999999996 5899999999843

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.26  E-value=0.013  Score=55.75  Aligned_cols=52  Identities=25%  Similarity=0.275  Sum_probs=38.6

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHC------CCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~------G~rVLLiD~D~~   67 (365)
                      .+.|+.++...  .-.++.+.|..|+||||++..++...+..      |.+|+.||+...
T Consensus       117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~  176 (349)
T 1pzn_A          117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT  176 (349)
T ss_dssp             CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence            34678887532  23477777999999999999999887532      357899998754

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.25  E-value=0.0033  Score=56.83  Aligned_cols=40  Identities=25%  Similarity=0.334  Sum_probs=33.5

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHH-----CCCCEEEEeCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAE-----VRPSVLIISTDP   66 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~-----~G~rVLLiD~D~   66 (365)
                      .+.++.++|-.|+||||+|..||..+..     .|++|+++|+|.
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~   65 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS   65 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCc
Confidence            4567888899999999999999987763     367899999993

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.25  E-value=0.0033  Score=62.85  Aligned_cols=52  Identities=8%  Similarity=0.002  Sum_probs=42.7

Q ss_pred             hhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCC
Q 017873           16 EGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~   67 (365)
                      .+.|+.++.+ ..-.++++.|.+|+||||++.++|..++.. |.+|++++++..
T Consensus       229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s  282 (503)
T 1q57_A          229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES  282 (503)
T ss_dssp             CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred             hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence            4568888752 122477888999999999999999999986 999999999854

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.21  E-value=0.0036  Score=59.54  Aligned_cols=57  Identities=18%  Similarity=0.129  Sum_probs=45.0

Q ss_pred             hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHC--------CCCEEEEeCC
Q 017873            9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV--------RPSVLIISTD   65 (365)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~--------G~rVLLiD~D   65 (365)
                      +++++.+...+...+.+.....+++.|.+|+||||++..++..+...        +..++.+++.
T Consensus        26 ~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~   90 (384)
T 2qby_B           26 EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR   90 (384)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence            45566666667776666656688899999999999999999998765        7788888864

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.17  E-value=0.0069  Score=59.75  Aligned_cols=51  Identities=18%  Similarity=0.229  Sum_probs=40.8

Q ss_pred             hhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCC
Q 017873           17 GSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA   67 (365)
Q Consensus        17 ~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~   67 (365)
                      +.|+.++.+ ..-.++++.|.+|+||||++.++|..++. .|.+|++++++..
T Consensus       191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s  243 (454)
T 2r6a_A          191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS  243 (454)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred             HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            457777642 12247788899999999999999999996 6899999999854

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.14  E-value=0.0047  Score=58.49  Aligned_cols=61  Identities=15%  Similarity=0.152  Sum_probs=44.8

Q ss_pred             hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHC------CCCEEEEeCCCCCC
Q 017873            9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHN   69 (365)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~------G~rVLLiD~D~~~~   69 (365)
                      +++++.+...+...+.......+++.|.+|+||||++..++..+...      +..++.+++....+
T Consensus        25 ~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   91 (387)
T 2v1u_A           25 EAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRET   91 (387)
T ss_dssp             HHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCS
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCC
Confidence            34555566666655555555678889999999999999999988764      66777788765444

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.14  E-value=0.015  Score=54.14  Aligned_cols=39  Identities=15%  Similarity=0.165  Sum_probs=25.1

Q ss_pred             ceEEEEeecCCcchHHHHHHHHHHHHhC--CCCcCeEEEcCc
Q 017873          224 LTTFVCVCIPEFLSLYETERLVQELTKF--EIDTHNIIINQV  263 (365)
Q Consensus       224 ~t~~~lVt~p~~~s~~et~~~~~~L~~~--gi~v~~vVvN~~  263 (365)
                      .+.+++|.......-.....+++.++..  +.|+ -+|+|+.
T Consensus        87 ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~-ilV~NK~  127 (301)
T 1wf3_A           87 VNAVVWVVDLRHPPTPEDELVARALKPLVGKVPI-LLVGNKL  127 (301)
T ss_dssp             CSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCE-EEEEECG
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCE-EEEEECc
Confidence            3466777665432223346667788877  7776 4888999

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.08  E-value=0.013  Score=51.40  Aligned_cols=52  Identities=25%  Similarity=0.298  Sum_probs=37.9

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.+.  .-.++.+.|..|+||||++..++..+..      .+.+++.++....
T Consensus        11 ~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~   70 (231)
T 4a74_A           11 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT   70 (231)
T ss_dssp             CHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred             ChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence            45677777532  2247777899999999999999986653      3556888888753

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.08  E-value=0.0032  Score=58.49  Aligned_cols=41  Identities=20%  Similarity=0.283  Sum_probs=32.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      ..++.++|-.|+||||+|..|+..+...|.++.+||+|.-+
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~   45 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   45 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence            45778889999999999999999988888899999999543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.04  E-value=0.0065  Score=53.17  Aligned_cols=47  Identities=21%  Similarity=0.218  Sum_probs=37.1

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCC
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTD   65 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D   65 (365)
                      .+..+......++++.|-.|+||||++..|+..+. ..|.++..+|.|
T Consensus        16 ~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d   63 (211)
T 1m7g_A           16 ERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD   63 (211)
T ss_dssp             HHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred             HhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence            34444434446677779999999999999999998 789999999865

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.02  E-value=0.0047  Score=52.57  Aligned_cols=37  Identities=32%  Similarity=0.277  Sum_probs=31.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++++.|-.|+||||++..||..+...|.+.-.+|+|
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~   40 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG   40 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence            4678889999999999999999998888666667654

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.99  E-value=0.0092  Score=56.63  Aligned_cols=62  Identities=21%  Similarity=0.169  Sum_probs=46.0

Q ss_pred             hhhhhcchhhHHhhhcCCCeE--EEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCCCCh
Q 017873            9 DQELEIPEGSVRNILEQDSLK--WVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHNL   70 (365)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~--i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~~~l   70 (365)
                      +++++.+...+...+.+....  .+++.|..|+||||++..++..+... +..++.+++....+.
T Consensus        23 ~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~   87 (389)
T 1fnn_A           23 EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF   87 (389)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence            345666666666665544434  78889999999999999999988766 678888887665543

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=95.99  E-value=0.0076  Score=51.10  Aligned_cols=37  Identities=30%  Similarity=0.285  Sum_probs=32.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++++.|..|+||||++..|+..+...|.+++.+|.|
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~   42 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD   42 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence            4566779999999999999999988889989888866

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=95.98  E-value=0.023  Score=59.22  Aligned_cols=38  Identities=13%  Similarity=0.107  Sum_probs=30.0

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|..+.......+...+..+...++|+. +|+|++
T Consensus       107 D~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKi  144 (704)
T 2rdo_7          107 DGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKM  144 (704)
T ss_pred             CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCC
Confidence            46777777766566678888888888899875 889999

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.97  E-value=0.0087  Score=50.24  Aligned_cols=29  Identities=24%  Similarity=0.215  Sum_probs=24.0

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAE   54 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~   54 (365)
                      .....+++.|..|+|||+++..++..+..
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            33445677899999999999999999876

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=95.92  E-value=0.0069  Score=58.09  Aligned_cols=62  Identities=23%  Similarity=0.125  Sum_probs=43.6

Q ss_pred             hhhhcchhhH-HhhhcC--CCeEEEEE--eCCCCCcHHHHHHHHHHHHHHC------CCCEEEEeCCCCCChh
Q 017873           10 QELEIPEGSV-RNILEQ--DSLKWVFV--GGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHNLS   71 (365)
Q Consensus        10 ~~~~~~~~~l-~~~~~~--~~~~i~~~--sgKGGvGKTT~aa~lA~~la~~------G~rVLLiD~D~~~~l~   71 (365)
                      ++++.+...+ .....+  .....+++  .|.+|+||||++..++..+...      +..++.+++.+..+..
T Consensus        29 ~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (412)
T 1w5s_A           29 GEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY  101 (412)
T ss_dssp             HHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred             HHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence            4455555555 555544  34556777  9999999999999999888753      6678888876544433

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.91  E-value=0.0099  Score=51.51  Aligned_cols=39  Identities=26%  Similarity=0.320  Sum_probs=33.7

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ...++++.|..|+||||++..||..+...|..+..+|.|
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d   62 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD   62 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence            346777789999999999999999998788877788877

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.84  E-value=0.011  Score=55.62  Aligned_cols=46  Identities=9%  Similarity=-0.052  Sum_probs=40.1

Q ss_pred             hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873            9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAE   54 (365)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~   54 (365)
                      +++++.++..|...+.+.....++++|++|+|||+++-.++..+..
T Consensus        26 e~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~   71 (318)
T 3te6_A           26 VEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT   71 (318)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4677888888888888777778899999999999999999999975

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.83  E-value=0.015  Score=54.31  Aligned_cols=38  Identities=8%  Similarity=0.072  Sum_probs=25.2

Q ss_pred             eEEEEeecCCc-chHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEF-LSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~-~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|..+.. .+..+....++.+...++|+. +|+|+.
T Consensus        94 D~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvi-lV~NK~  132 (308)
T 3iev_A           94 DVILFMIDATEGWRPRDEEIYQNFIKPLNKPVI-VVINKI  132 (308)
T ss_dssp             SEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEE-EEEECG
T ss_pred             CEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEE-EEEECc
Confidence            46666666654 344443333788888888874 888998

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.77  E-value=0.0058  Score=57.78  Aligned_cols=61  Identities=15%  Similarity=0.226  Sum_probs=43.9

Q ss_pred             hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHC---CCCEEEEeCCCCCC
Q 017873            9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV---RPSVLIISTDPAHN   69 (365)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~---G~rVLLiD~D~~~~   69 (365)
                      +++++.+...+...+.+.....+++.|.+|+||||++..++..+...   +..++.+++....+
T Consensus        26 ~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~   89 (386)
T 2qby_A           26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT   89 (386)
T ss_dssp             HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred             HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence            34555555555555445555677888999999999999999988765   77888888754333

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.75  E-value=0.0088  Score=50.16  Aligned_cols=30  Identities=27%  Similarity=0.313  Sum_probs=24.7

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAE   54 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~   54 (365)
                      ......+++.|..|+||||++..+|..+..
T Consensus        40 ~~~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           40 RRTKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             CCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            333455688899999999999999999876

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=95.71  E-value=0.0092  Score=60.36  Aligned_cols=38  Identities=26%  Similarity=0.327  Sum_probs=34.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..+++++|..|+||||++..|+..+...|+++.++|.|
T Consensus       372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D  409 (546)
T 2gks_A          372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD  409 (546)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence            35677889999999999999999999999999999987

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.70  E-value=0.014  Score=49.56  Aligned_cols=34  Identities=26%  Similarity=0.202  Sum_probs=29.3

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      ++++.|-.|+||||++..|+..+...|..++-.|
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d   35 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR   35 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            5677899999999999999999988898876554

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.68  E-value=0.0068  Score=51.11  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=27.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .+++++|-.|+||||++..||..+   |...+.+|.|
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D   37 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD   37 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence            578899999999999999998765   4556667776

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.66  E-value=0.011  Score=55.23  Aligned_cols=38  Identities=18%  Similarity=0.228  Sum_probs=33.6

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D   65 (365)
                      ..-+++.|..|+|||+++.++|..+. ..|++|+.+.+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~  190 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP  190 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence            35667789999999999999999999 999999998764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.58  E-value=0.0082  Score=55.53  Aligned_cols=37  Identities=30%  Similarity=0.435  Sum_probs=29.4

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ....+++++|-.|+||||++..|+..+   +.....||+|
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D   67 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDND   67 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Confidence            345788999999999999999998754   2346788886

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.57  E-value=0.017  Score=51.57  Aligned_cols=35  Identities=20%  Similarity=0.008  Sum_probs=32.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      .+.+++|..|+||||.+..++..++.+|++|+++.
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~   47 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK   47 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence            57788999999999999999999999999999994

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.49  E-value=0.74  Score=39.56  Aligned_cols=38  Identities=5%  Similarity=0.008  Sum_probs=26.0

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|.............++..+...++|+. +|+|+.
T Consensus       117 d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~  154 (223)
T 4dhe_A          117 CGMILMMDARRPLTELDRRMIEWFAPTGKPIH-SLLTKC  154 (223)
T ss_dssp             EEEEEEEETTSCCCHHHHHHHHHHGGGCCCEE-EEEECG
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEecc
Confidence            34666666544323455667888888888864 889999

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.44  E-value=0.015  Score=48.18  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=32.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++++.|..|+||||++..++..+...|+++..++..
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~   73 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA   73 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence            4567789999999999999999998888888888764

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.33  E-value=0.019  Score=52.91  Aligned_cols=50  Identities=12%  Similarity=0.111  Sum_probs=38.8

Q ss_pred             hhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCC
Q 017873           17 GSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDP   66 (365)
Q Consensus        17 ~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~   66 (365)
                      +.|+.+..+ ..-.++.+.|.+|+||||++.++|..++.. |.+|++++.+.
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~   74 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE   74 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence            346665532 222477778999999999999999999865 88999999875

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.31  E-value=0.014  Score=48.99  Aligned_cols=34  Identities=26%  Similarity=0.305  Sum_probs=26.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +.++++.|-.|+||||++..|+..    ......+|.|
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d   35 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRD   35 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHH
Confidence            467899999999999999998872    2346777775

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.31  E-value=0.01  Score=48.78  Aligned_cols=53  Identities=15%  Similarity=0.159  Sum_probs=37.5

Q ss_pred             hhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        10 ~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..++.+...+.......  .-+++.|..|+|||++|.+++....+.+...+ +++.
T Consensus         8 ~~~~~~~~~~~~~a~~~--~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~   60 (145)
T 3n70_A            8 EWINQYRRRLQQLSETD--IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL   60 (145)
T ss_dssp             HHHHHHHHHHHHHTTCC--SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred             HHHHHHHHHHHHHhCCC--CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence            44555555555554333  23567799999999999999887777777777 8775

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.29  E-value=0.015  Score=49.98  Aligned_cols=36  Identities=19%  Similarity=0.106  Sum_probs=32.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      .+.++.|..|+||||++..++..+..+|++|+++-.
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~   39 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKP   39 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEee
Confidence            467888999999999999999999999999999753

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.27  E-value=0.024  Score=48.83  Aligned_cols=35  Identities=20%  Similarity=0.279  Sum_probs=28.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      .++++.|-.|+||||++..||..+...| +|+..+.
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~~   39 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTEW   39 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEET
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEecC
Confidence            5678889999999999999999988777 6755443

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.27  E-value=0.021  Score=49.48  Aligned_cols=36  Identities=19%  Similarity=0.191  Sum_probs=30.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      .++++.|-.|+||||++..|+..+...|.+|..+..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~   45 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRF   45 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeC
Confidence            466777899999999999999999989998865543

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.25  E-value=0.022  Score=53.58  Aligned_cols=41  Identities=34%  Similarity=0.443  Sum_probs=33.9

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHH--CCCCEEEEeCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAE--VRPSVLIISTDP   66 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~--~G~rVLLiD~D~   66 (365)
                      +.+.|+.+.|..|+||||++..++..+..  .+.+|.++..|.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~  132 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG  132 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence            34558888999999999999999988864  356799999994

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.16  E-value=0.017  Score=52.28  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=27.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      |++++++|..|+||||+|..||..+   |  ..+++.|.
T Consensus         1 M~li~I~G~~GSGKSTla~~La~~~---~--~~~i~~D~   34 (253)
T 2ze6_A            1 MLLHLIYGPTCSGKTDMAIQIAQET---G--WPVVALDR   34 (253)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH---C--CCEEECCS
T ss_pred             CeEEEEECCCCcCHHHHHHHHHhcC---C--CeEEeccH
Confidence            3678899999999999999998765   3  35678874

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=95.15  E-value=0.033  Score=48.34  Aligned_cols=35  Identities=9%  Similarity=-0.123  Sum_probs=32.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      ++.++.|.-|+||||.+..+|..+..+|++|+++-
T Consensus         9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k   43 (191)
T 1xx6_A            9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK   43 (191)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            58888999999999999999999999999999995

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.13  E-value=0.035  Score=48.28  Aligned_cols=40  Identities=25%  Similarity=0.297  Sum_probs=33.6

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ...++.+.|..|+||||++..++..+...|.++..|..|.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~   60 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG   60 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence            4467777899999999999999999886677788888874

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.08  E-value=0.013  Score=50.76  Aligned_cols=34  Identities=21%  Similarity=0.228  Sum_probs=27.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      +.+++++|-.|+||||++..|+..+   |  ..++|.|.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~   51 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDA   51 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCc
Confidence            4578888999999999999999877   4  45678774

>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*

Probab=95.04  E-value=0.18  Score=45.80  Aligned_cols=42  Identities=26%  Similarity=0.345  Sum_probs=36.0

Q ss_pred             CCeEEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           26 DSLKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        26 ~~~~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .++.|.+++| -.|.||=.+|++++.-|..+|+||-++=+||-
T Consensus        22 ~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPY   64 (295)
T 2vo1_A           22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPY   64 (295)
T ss_dssp             CCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred             cceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccc
Confidence            3444556666 89999999999999999999999999999974

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.01  E-value=0.012  Score=49.92  Aligned_cols=33  Identities=30%  Similarity=0.479  Sum_probs=26.1

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ++++++.|-.|+||||++..||..+   |.  -++|+|
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l---~~--~~i~~d   37 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT---KR--ILYDSD   37 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH---CC--CEEEHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh---CC--CEEECh
Confidence            4567788999999999999999876   44  456766

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.00  E-value=0.021  Score=58.07  Aligned_cols=38  Identities=24%  Similarity=0.247  Sum_probs=34.2

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVR-PSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G-~rVLLiD~D   65 (365)
                      ..+++++|-.|+||||+|..|+..|..+| +++.++|.|
T Consensus       396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D  434 (573)
T 1m8p_A          396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD  434 (573)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred             ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence            45778889999999999999999999888 899999977

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.95  E-value=0.0097  Score=51.22  Aligned_cols=40  Identities=20%  Similarity=0.276  Sum_probs=28.8

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCC
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPS   58 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~r   58 (365)
                      |...+.......+++.|..|+|||+++..++..+...+.+
T Consensus        29 l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~   68 (226)
T 2chg_A           29 LKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWR   68 (226)
T ss_dssp             HHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGG
T ss_pred             HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccc
Confidence            4444444333337888999999999999999988765544

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=94.95  E-value=0.018  Score=51.87  Aligned_cols=38  Identities=29%  Similarity=0.458  Sum_probs=30.3

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ....++++.|.+|+||||++..|+..+   +..+.++|.|.
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~   67 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDS   67 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGG
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHH
Confidence            345688899999999999999998765   34567888883

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=94.90  E-value=0.017  Score=48.02  Aligned_cols=33  Identities=24%  Similarity=0.216  Sum_probs=26.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .+++++|-.|+||||++..||..+   |.  -.+|.|.
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l---~~--~~i~~d~   34 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKEL---KY--PIIKGSS   34 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHH---CC--CEEECCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh---CC--eeecCcc
Confidence            477889999999999999998765   44  4578883

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=94.85  E-value=0.069  Score=53.72  Aligned_cols=38  Identities=11%  Similarity=-0.028  Sum_probs=29.3

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|..+.......+..++..+...++|+ -+|+|+.
T Consensus       107 D~~IlVvDa~~g~~~~t~~~~~~~~~~~ipi-ivviNK~  144 (529)
T 2h5e_A          107 DCCLMVIDAAKGVEDRTRKLMEVTRLRDTPI-LTFMNKL  144 (529)
T ss_dssp             SEEEEEEETTTCSCHHHHHHHHHHTTTTCCE-EEEEECT
T ss_pred             CEEEEEEeCCccchHHHHHHHHHHHHcCCCE-EEEEcCc
Confidence            4677777765544567788888888889995 6889999

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=94.83  E-value=0.026  Score=56.64  Aligned_cols=41  Identities=20%  Similarity=0.146  Sum_probs=36.5

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .++.++++.|-.|+||||+|..||..+...+.++.+++.|.
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~   73 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE   73 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence            34568889999999999999999999998899999999983

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=94.82  E-value=0.027  Score=57.73  Aligned_cols=39  Identities=28%  Similarity=0.232  Sum_probs=34.7

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ...++++.|-.|+||||++..|+..|...|.++..+|.|
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD   89 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD   89 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence            346788889999999999999999999899999998866

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.80  E-value=0.03  Score=48.36  Aligned_cols=35  Identities=26%  Similarity=0.284  Sum_probs=30.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      .++++.|-.|+||||++..||..+...+..|.++.
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   45 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY   45 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence            46778889999999999999999998898886554

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=94.67  E-value=0.027  Score=48.66  Aligned_cols=40  Identities=23%  Similarity=0.263  Sum_probs=28.2

Q ss_pred             hhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        22 ~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      |.......++++.|..|+||||++..|+..+   |  ...+|.|.
T Consensus        23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~   62 (200)
T 4eun_A           23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET---G--LEFAEADA   62 (200)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGG
T ss_pred             hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---C--CeEEcccc
Confidence            3333334577888999999999999999877   5  36778774

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=94.65  E-value=0.044  Score=53.92  Aligned_cols=36  Identities=19%  Similarity=0.351  Sum_probs=31.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCC-CEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRP-SVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~-rVLLiD~D   65 (365)
                      .+++.|.+|+||||++..++.++...|. +|+++..-
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T   83 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT   83 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence            7788999999999999999999999887 78877554

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=94.64  E-value=0.022  Score=48.37  Aligned_cols=33  Identities=36%  Similarity=0.440  Sum_probs=26.2

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..++++.|-.|+||||++..|+..+   |..  ++|.|
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l---~~~--~i~~D   37 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGL---RLP--LLSKD   37 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc---CCe--EecHH
Confidence            4678888999999999999999876   543  45654

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=94.62  E-value=0.018  Score=47.81  Aligned_cols=28  Identities=29%  Similarity=0.502  Sum_probs=22.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEE
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVL   60 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVL   60 (365)
                      .++++.|..|+||||++..|    ...|..++
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i   29 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL----KERGAKVI   29 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred             cEEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence            36788899999999999988    55677543

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=94.60  E-value=0.034  Score=49.49  Aligned_cols=42  Identities=26%  Similarity=0.418  Sum_probs=35.3

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAHN   69 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~~~   69 (365)
                      ..++++.|-.|+||||++..|+..+.. .|++|.++.-.|..+
T Consensus        21 ~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t   63 (223)
T 3ld9_A           21 SMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGT   63 (223)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCC
Confidence            456777899999999999999999998 999998866666543

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=94.59  E-value=0.03  Score=53.10  Aligned_cols=35  Identities=26%  Similarity=0.167  Sum_probs=29.8

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      +++++++|..|+||||+|..||..+.     +.+|++|.-
T Consensus         7 ~~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~   41 (340)
T 3d3q_A            7 PFLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM   41 (340)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred             CceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence            36889999999999999999998752     789999953

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=94.50  E-value=0.049  Score=50.95  Aligned_cols=40  Identities=33%  Similarity=0.360  Sum_probs=30.7

Q ss_pred             hhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        22 ~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      |-.....++++++|..|+||||+|..||..+     ..-+|++|.
T Consensus         4 ~~~~~~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds   43 (316)
T 3foz_A            4 ISKASLPKAIFLMGPTASGKTALAIELRKIL-----PVELISVDS   43 (316)
T ss_dssp             ---CCCCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred             cccCCCCcEEEEECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence            3344556788999999999999999998764     367899984

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.47  E-value=0.012  Score=51.18  Aligned_cols=35  Identities=26%  Similarity=0.263  Sum_probs=30.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ++++.|-.|+||||++..|+..+...|.+|.++..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~   36 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF   36 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence            56778999999999999999999888888887764

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=94.46  E-value=0.034  Score=51.49  Aligned_cols=41  Identities=24%  Similarity=0.242  Sum_probs=32.7

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CCEEEE-eCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVR--PSVLII-STDP   66 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G--~rVLLi-D~D~   66 (365)
                      +...++.+.|..|+||||++..|+..+...|  .++..+ ..|.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~   72 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD   72 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccc
Confidence            4456788889999999999999999998655  445544 9984

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.44  E-value=0.042  Score=50.50  Aligned_cols=39  Identities=23%  Similarity=0.311  Sum_probs=33.6

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ...+++.|..|+||||+|..+|..+...+..+..+++..
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~   85 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE   85 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence            356788899999999999999999987777889998863

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=94.43  E-value=0.027  Score=49.20  Aligned_cols=39  Identities=15%  Similarity=0.085  Sum_probs=29.6

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHH-----HCC-CCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLA-----EVR-PSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la-----~~G-~rVLLiD~D   65 (365)
                      .+-|.++.|..|+|||+.|..++..++     +.| ++|.+..+|
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~   48 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK   48 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence            344778889999999999998877765     567 666556555

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=94.37  E-value=0.041  Score=51.20  Aligned_cols=47  Identities=26%  Similarity=0.227  Sum_probs=37.1

Q ss_pred             HHhhhcCCC--eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           19 VRNILEQDS--LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        19 l~~~~~~~~--~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +..++...+  ...+++.|..|+||||++..++..+...|.+++.++++
T Consensus        26 ~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~   74 (324)
T 1l8q_A           26 VKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD   74 (324)
T ss_dssp             HHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             HHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence            444544432  34567789999999999999999998889999999875

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=94.36  E-value=0.053  Score=47.76  Aligned_cols=35  Identities=29%  Similarity=0.314  Sum_probs=30.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      .++++.|-.|+||||.+..|+..+...|++|.+..
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~   41 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR   41 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence            46677899999999999999999999999997654

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=94.34  E-value=0.23  Score=47.13  Aligned_cols=39  Identities=21%  Similarity=-0.018  Sum_probs=32.5

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .+++.+++--.++||||++..|...+.++|+++..+-+-
T Consensus       169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tg  207 (350)
T 2g0t_A          169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATG  207 (350)
T ss_dssp             SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccC
Confidence            456667776678999999999999999999999886543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=94.33  E-value=0.32  Score=46.82  Aligned_cols=39  Identities=8%  Similarity=0.068  Sum_probs=30.2

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|..+..-...++.+.+..+...|+|..-+++|+.
T Consensus        91 D~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~  129 (397)
T 1d2e_A           91 DGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKA  129 (397)
T ss_dssp             SEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECc
Confidence            467777777665567778888888888988656889999

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=94.31  E-value=0.036  Score=55.46  Aligned_cols=38  Identities=13%  Similarity=0.017  Sum_probs=33.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH-C-CCCEEEEeCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAE-V-RPSVLIISTDP   66 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~-~-G~rVLLiD~D~   66 (365)
                      .+++++|-.|+||||++..||..|.. + |+.+-++|.|.
T Consensus       396 ~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          396 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             eEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            56788899999999999999999986 6 47788999997

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=94.27  E-value=0.051  Score=45.56  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=27.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ..++++.|..|+||||++..|+..+   |  ...+|.|.
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~   41 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDF   41 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGG
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCcc
Confidence            4577888999999999999998765   5  46778874

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=94.26  E-value=1.8  Score=35.83  Aligned_cols=38  Identities=8%  Similarity=0.089  Sum_probs=26.8

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|..+..........+..++...++|+ -+|+|+.
T Consensus       106 ~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~  143 (195)
T 3pqc_A          106 QMVFLLVDGRIPPQDSDLMMVEWMKSLNIPF-TIVLTKM  143 (195)
T ss_dssp             EEEEEEEETTSCCCHHHHHHHHHHHHTTCCE-EEEEECG
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHHcCCCE-EEEEECh
Confidence            4666677665443445556778888888887 4889998

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=94.25  E-value=0.024  Score=48.94  Aligned_cols=33  Identities=30%  Similarity=0.419  Sum_probs=26.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ++++++.|..|+||||++..||..+   |..  .+|.|
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~l---~~~--~i~~d   57 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARKL---NVP--FIDLD   57 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHc---CCC--EEcch
Confidence            4567788999999999999999877   443  46766

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=94.24  E-value=0.034  Score=47.03  Aligned_cols=34  Identities=26%  Similarity=0.210  Sum_probs=27.5

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ++.++++.|..|+||||++..||..+   |  ...+|+|
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d   38 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDF---G--WVHLSAG   38 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence            45678888999999999999998866   4  4567776

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.23  E-value=0.05  Score=49.62  Aligned_cols=56  Identities=14%  Similarity=0.150  Sum_probs=38.6

Q ss_pred             hhcchhhHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC----------CCCEEEEeCCCC
Q 017873           12 LEIPEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV----------RPSVLIISTDPA   67 (365)
Q Consensus        12 ~~~~~~~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~----------G~rVLLiD~D~~   67 (365)
                      +..-.+.|+.++.+ ..-.++.+.|.+|+||||++..++..++.-          +.+|+.+++...
T Consensus        13 i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~   79 (279)
T 1nlf_A           13 FAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP   79 (279)
T ss_dssp             HHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred             hcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence            34444456656542 112367778999999999999999977642          467888888753

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=94.10  E-value=0.028  Score=46.90  Aligned_cols=33  Identities=30%  Similarity=0.337  Sum_probs=26.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ++++++.|-.|+||||++..||..+   |.  -++|+|
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~l---g~--~~id~d   34 (173)
T 1e6c_A            2 TEPIFMVGARGCGMTTVGRELARAL---GY--EFVDTD   34 (173)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHH---TC--EEEEHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh---CC--cEEccc
Confidence            4567888999999999999999876   43  467776

>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}

Probab=94.10  E-value=0.076  Score=48.36  Aligned_cols=52  Identities=4%  Similarity=-0.174  Sum_probs=40.6

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+.|+.|+.++  .-.++.++|-+|.||||++..++...+++|.+++++.++..
T Consensus         7 i~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~   60 (260)
T 3bs4_A            7 IEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYP   60 (260)
T ss_dssp             SHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred             cHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence            35688888752  22455567666777779999999999999999999999954

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=94.06  E-value=0.2  Score=51.95  Aligned_cols=38  Identities=16%  Similarity=0.136  Sum_probs=28.0

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|..+..-....+...+..+...++|+. +|+|+.
T Consensus       100 D~~llVvDa~~g~~~~~~~~~~~~~~~~~p~i-lviNK~  137 (693)
T 2xex_A          100 DGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKM  137 (693)
T ss_dssp             SEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECT
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHHHcCCCEE-EEEECC
Confidence            36677776655444567778888888898875 789999

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=94.05  E-value=0.036  Score=51.19  Aligned_cols=36  Identities=14%  Similarity=0.110  Sum_probs=29.7

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      +..+.+++.|.+|+|||++|.++|..+   |.+++.+++
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~   69 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA   69 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence            445677778999999999999999887   777887775

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=94.03  E-value=0.25  Score=47.58  Aligned_cols=39  Identities=10%  Similarity=0.036  Sum_probs=29.1

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|..+..-...++.+.+..+...++|..-+++|+.
T Consensus       100 D~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~  138 (405)
T 2c78_A          100 DGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKV  138 (405)
T ss_dssp             SSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred             CEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECc
Confidence            356677666555556788888888889988545889999

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=93.99  E-value=0.034  Score=47.72  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=27.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      .++++.|-.|+||||++..||..+  .|.+++.++.
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~   38 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNF   38 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence            356777899999999999998876  4677777664

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=93.97  E-value=0.062  Score=50.00  Aligned_cols=42  Identities=29%  Similarity=0.335  Sum_probs=32.9

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHH--HCCCCEEEEeCCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDPA   67 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la--~~G~rVLLiD~D~~   67 (365)
                      ....++.+.|..|+||||++..|+..+.  -.+-+|.+|++|-.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            3346777789999999999999998876  34456999999843

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=93.97  E-value=0.082  Score=56.22  Aligned_cols=38  Identities=24%  Similarity=0.294  Sum_probs=33.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ..+++.|..|+|||++|..+|..+...+..++.+|+..
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~  626 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE  626 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechh
Confidence            46788899999999999999999988788888888763

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=93.97  E-value=1.5  Score=40.31  Aligned_cols=80  Identities=13%  Similarity=0.109  Sum_probs=41.1

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCC
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLL  304 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~  304 (365)
                      ..+++|......+ .....+++.+...+.|+. +|+|+. ....  ...       .-...++++.+.++-.  ..+|..
T Consensus        90 D~vl~Vvd~~~~~-~~~~~i~~~l~~~~~P~i-lvlNK~-D~~~--~~~-------~~~~~l~~l~~~~~~~--~~i~iS  155 (301)
T 1ega_A           90 ELVIFVVEGTRWT-PDDEMVLNKLREGKAPVI-LAVNKV-DNVQ--EKA-------DLLPHLQFLASQMNFL--DIVPIS  155 (301)
T ss_dssp             EEEEEEEETTCCC-HHHHHHHHHHHSSSSCEE-EEEEST-TTCC--CHH-------HHHHHHHHHHTTSCCS--EEEECC
T ss_pred             CEEEEEEeCCCCC-HHHHHHHHHHHhcCCCEE-EEEECc-ccCc--cHH-------HHHHHHHHHHHhcCcC--ceEEEE
Confidence            4555655543333 334567777877788874 777999 3321  011       1122344455444321  245666


Q ss_pred             CCCCCCHHHHHHHH
Q 017873          305 PEEVTGIEALKAFS  318 (365)
Q Consensus       305 ~~e~~g~~~L~~l~  318 (365)
                      ...-.|++.|....
T Consensus       156 A~~g~~v~~l~~~i  169 (301)
T 1ega_A          156 AETGLNVDTIAAIV  169 (301)
T ss_dssp             TTTTTTHHHHHHHH
T ss_pred             CCCCCCHHHHHHHH
Confidence            55556665544433

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=93.94  E-value=0.043  Score=46.64  Aligned_cols=39  Identities=21%  Similarity=0.199  Sum_probs=30.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .++.+.|..|+||||++..++-.+...|+++..|-.|..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~   41 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH   41 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence            455555699999999999999999988888877776643

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=93.93  E-value=0.041  Score=51.78  Aligned_cols=35  Identities=29%  Similarity=0.295  Sum_probs=29.2

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      +.++++++|..|+||||++..||..+     ...+||+|.
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds   38 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDS   38 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccc
Confidence            34688999999999999999998764     268899984

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=93.93  E-value=0.04  Score=46.91  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=26.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..+++++|..|+||||++..||..+  .|  .-.+|+|
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~l--~g--~~~id~d   43 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAEL--DG--FQHLEVG   43 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHS--TT--EEEEEHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc--CC--CEEeeHH
Confidence            3467788999999999999988752  24  5678887

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=93.90  E-value=0.055  Score=54.98  Aligned_cols=37  Identities=22%  Similarity=0.286  Sum_probs=32.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ..++++.|-+|+||||++..++..+...|++|+++-.
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap  240 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP  240 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence            3577888999999999999999999999999998854

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=93.86  E-value=0.12  Score=51.41  Aligned_cols=40  Identities=30%  Similarity=0.362  Sum_probs=34.7

Q ss_pred             eEEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           28 LKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        28 ~~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      +.|++++| -.|.||-.+|++++.-|..+|+||-++=+||-
T Consensus         4 k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpy   44 (535)
T 3nva_A            4 KYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPY   44 (535)
T ss_dssp             EEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred             eEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcc
Confidence            34555555 59999999999999999999999999999984

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=93.86  E-value=0.22  Score=51.70  Aligned_cols=38  Identities=11%  Similarity=0.079  Sum_probs=28.8

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|..+.......+...+..+...++|+. +|+|+.
T Consensus       102 D~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKi  139 (691)
T 1dar_A          102 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKM  139 (691)
T ss_dssp             SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECT
T ss_pred             CEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECC
Confidence            36777777655555667778888888899875 889999

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=93.83  E-value=0.1  Score=46.09  Aligned_cols=36  Identities=8%  Similarity=-0.138  Sum_probs=33.3

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      -.|.|+.|.-|.||||.+..+|..+..+|++|+++-
T Consensus        28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k   63 (214)
T 2j9r_A           28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK   63 (214)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            358889999999999999999999999999999996

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=93.78  E-value=0.036  Score=49.96  Aligned_cols=54  Identities=20%  Similarity=0.202  Sum_probs=38.2

Q ss_pred             hhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           11 ELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        11 ~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .+..+...+.......  .-+++.|..|+|||++|.+++..+.+.+.+++.+++..
T Consensus        14 ~~~~~~~~~~~~~~~~--~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~   67 (265)
T 2bjv_A           14 SFLEVLEQVSHLAPLD--KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA   67 (265)
T ss_dssp             HHHHHHHHHHHHTTSC--SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred             HHHHHHHHHHHHhCCC--CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence            3444444444444332  34567899999999999999988777777888888763

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=93.76  E-value=0.084  Score=45.81  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=30.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ++++-|--|+||||.+..|+.+|...|++|++...
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre   36 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE   36 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence            35677999999999999999999999999987754

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=93.76  E-value=0.034  Score=46.73  Aligned_cols=33  Identities=27%  Similarity=0.323  Sum_probs=25.8

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      |+++++.|..|+||||++..||..+   |  ...+|.|
T Consensus         4 m~~i~i~G~~GsGKsTla~~La~~l---~--~~~~d~d   36 (175)
T 1via_A            4 AKNIVFIGFMGSGKSTLARALAKDL---D--LVFLDSD   36 (175)
T ss_dssp             -CCEEEECCTTSCHHHHHHHHHHHH---T--CEEEEHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHc---C--CCEEccc
Confidence            3457778999999999999999876   3  3567776

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=93.74  E-value=0.046  Score=46.38  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=26.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..++++.|..|+||||++..||..   .+...+.+|.|
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d   43 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSD   43 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence            357778899999999999988764   34456677766

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=93.74  E-value=0.027  Score=48.61  Aligned_cols=31  Identities=26%  Similarity=0.444  Sum_probs=24.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++.+.|..|+||||++..||. +   |  +-++|+|
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~---g--~~~i~~d   32 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-L---G--AYVLDAD   32 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-T---T--CEEEEHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-C---C--CEEEEcc
Confidence            4567788999999999999887 4   5  5677877

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=93.74  E-value=0.026  Score=53.16  Aligned_cols=33  Identities=27%  Similarity=0.245  Sum_probs=29.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      .++++.|.+|+||||+|.++|..   .|.+|+.+++
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~  156 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV  156 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence            45678999999999999999986   6888999998

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=93.67  E-value=0.087  Score=47.64  Aligned_cols=36  Identities=19%  Similarity=0.177  Sum_probs=27.5

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      .....-+++.|..|+|||++|.++|..+   |.+++.++
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~   96 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKIC   96 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence            3455667888999999999999999873   55555554

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=93.63  E-value=0.054  Score=46.93  Aligned_cols=34  Identities=29%  Similarity=0.318  Sum_probs=28.1

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      -..++.+.|..|+||||++..|+..+   |  .-+||+|
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D   44 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVD   44 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECc
Confidence            45677888999999999999998754   5  5779998

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=93.62  E-value=0.027  Score=48.08  Aligned_cols=33  Identities=30%  Similarity=0.269  Sum_probs=26.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..++++.|..|+||||++..||..+   |  ...+|+|
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d   44 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTG   44 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHH
Confidence            3577888999999999999999876   3  4577776

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=93.61  E-value=0.052  Score=46.70  Aligned_cols=33  Identities=33%  Similarity=0.242  Sum_probs=26.1

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..++++.|-.|+||||++..||..+   |..  ++|+|
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l---~~~--~i~~d   52 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKL---GIP--QISTG   52 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence            3467888999999999999999876   444  56665

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=93.60  E-value=0.13  Score=53.90  Aligned_cols=34  Identities=29%  Similarity=0.318  Sum_probs=28.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..+++.|..|+|||++|..+|..+   |.+.+-+|+.
T Consensus       489 ~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s  522 (758)
T 1r6b_X          489 GSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMS  522 (758)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEech
Confidence            356788999999999999999988   6777777764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=93.59  E-value=0.047  Score=45.51  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=26.5

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      -+.++++.|-.|+||||++..||..+   |.+  ++|+|
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~l---g~~--~id~D   39 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLAL---KLE--VLDTD   39 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHh---CCC--EEECh
Confidence            46788899999999999999998876   443  56776

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=93.53  E-value=0.043  Score=46.29  Aligned_cols=33  Identities=30%  Similarity=0.344  Sum_probs=25.6

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..++++.|-.|+||||++..||..+   |  .-.+|.|
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~---~--~~~~~~d   43 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKS---G--LKYINVG   43 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHh---C--CeEEEHH
Confidence            3466788999999999999999776   4  3456665

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=93.52  E-value=0.078  Score=48.65  Aligned_cols=38  Identities=21%  Similarity=0.254  Sum_probs=29.2

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----CEEEEeC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRP----SVLIIST   64 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~----rVLLiD~   64 (365)
                      +..-+++.|..|+|||++|.++|..+...+.    .++.+++
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~  107 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR  107 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence            3345677899999999999999999987654    5555553

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=93.40  E-value=0.061  Score=45.48  Aligned_cols=33  Identities=27%  Similarity=0.161  Sum_probs=26.2

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..++++.|-.|+||||++..||..+   |.  ..+|.|
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d   35 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY---GY--THLSAG   35 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence            3577888999999999999998765   43  457766

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=93.36  E-value=0.055  Score=46.51  Aligned_cols=35  Identities=29%  Similarity=0.279  Sum_probs=27.9

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..+.++++.|..|+||||++..||..+   |.  ..+|+|
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~---g~--~~i~~d   47 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDY---SF--VHLSAG   47 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS---SC--EEEEHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc---Cc--eEEeHH
Confidence            345678888999999999999998754   43  677876

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=93.32  E-value=0.069  Score=52.33  Aligned_cols=38  Identities=21%  Similarity=0.311  Sum_probs=32.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD~D   65 (365)
                      ..-+++.|..|+||||++.++|..+...  |.+++.+++.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~  169 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE  169 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence            4567888999999999999999998865  8889998875

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=93.29  E-value=0.11  Score=46.16  Aligned_cols=35  Identities=23%  Similarity=0.279  Sum_probs=29.2

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      ..++++.|-.|+||||++..|+..+.. |..|+...
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~   60 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR   60 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence            356677899999999999999999988 88886543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=93.28  E-value=0.24  Score=51.44  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=24.1

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ..+|+ +.|..|+||||+.-+|.      |.+++.++.+|.
T Consensus        69 ~~~V~-VvG~~naGKSSLlNaLl------g~~~~~v~~~p~  102 (695)
T 2j69_A           69 VFRLL-VLGDMKRGKSTFLNALI------GENLLPSDVNPC  102 (695)
T ss_dssp             CEEEE-EECCTTSCHHHHHHHHH------TSSCSCCCCCTT
T ss_pred             CCEEE-EECCCCCCHHHHHHHHh------CCCCCCCCCCCC
Confidence            44554 44899999999998876      666666555544

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=93.26  E-value=0.089  Score=47.15  Aligned_cols=39  Identities=21%  Similarity=0.389  Sum_probs=31.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .++++.|-.|+||||.+..|+..+...|.++.++--.|.
T Consensus        28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~   66 (236)
T 3lv8_A           28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG   66 (236)
T ss_dssp             CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC
Confidence            467778999999999999999999999999434444454

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=93.18  E-value=0.06  Score=47.06  Aligned_cols=33  Identities=21%  Similarity=0.175  Sum_probs=25.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +.++++.|..|+||||++..||..+   |.  ..+|+|
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d   36 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERF---HA--AHLATG   36 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc---Cc--eEEehh
Confidence            3466778999999999999999876   33  467765

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=93.15  E-value=0.046  Score=46.23  Aligned_cols=31  Identities=29%  Similarity=0.282  Sum_probs=25.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++++|-.|+||||+|..||..+   |.  -++|.|
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~l---g~--~~id~D   34 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKAL---GV--GLLDTD   34 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHH---TC--CEEEHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc---CC--CEEeCc
Confidence            47778999999999999998876   44  367777

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=93.05  E-value=0.057  Score=45.91  Aligned_cols=33  Identities=27%  Similarity=0.226  Sum_probs=26.1

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +.++++.|-.|+||||++..||..+   |.  ..+|+|
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l---~~--~~i~~d   41 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKY---GY--THLSTG   41 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh---CC--eEEcHH
Confidence            3567778999999999999999876   43  467776

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=93.02  E-value=0.048  Score=47.15  Aligned_cols=36  Identities=28%  Similarity=0.248  Sum_probs=27.8

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ...++.+.|..|+||||++..|+..+.    .+.+++.|.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~   55 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDD   55 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCc
Confidence            345777789999999999988776431    588999984

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=92.88  E-value=0.093  Score=49.17  Aligned_cols=34  Identities=38%  Similarity=0.373  Sum_probs=28.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .++++++|..|+||||++..||..+     ..-+|++|.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds   36 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDS   36 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCc
Confidence            3578899999999999999998754     367899994

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=92.88  E-value=0.081  Score=47.33  Aligned_cols=34  Identities=26%  Similarity=0.044  Sum_probs=26.5

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .+.+++++|..|+||||+|..|+..+   |  ...+|+|
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~---g--~~~is~~   61 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSH---C--YCHLSTG   61 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh---C--CeEEecH
Confidence            34567788999999999999999766   4  4566665

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=92.86  E-value=0.08  Score=45.23  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=26.2

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .+.+++++|..|+||||++..||..    |.  .++|+|
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~----g~--~~id~d   39 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW----GY--PVLDLD   39 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT----TC--CEEEHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC----CC--EEEccc
Confidence            3467788899999999999988874    54  567887

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=92.85  E-value=0.11  Score=53.50  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=33.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      -+.++.|.+|+|||++.+++...+..+|.+||++..-
T Consensus       206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T  242 (646)
T 4b3f_X          206 ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS  242 (646)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence            3778889999999999999999999999999998763

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=92.82  E-value=0.08  Score=47.19  Aligned_cols=35  Identities=29%  Similarity=0.335  Sum_probs=27.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHC----CCCEEEEe
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEV----RPSVLIIS   63 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~----G~rVLLiD   63 (365)
                      .++++.|-.|+||||.+..|+..+...    |.+|.+.-
T Consensus        26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r   64 (227)
T 3v9p_A           26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR   64 (227)
T ss_dssp             CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence            467788999999999999999999988    99997554

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=92.81  E-value=0.048  Score=47.75  Aligned_cols=32  Identities=22%  Similarity=0.172  Sum_probs=24.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..+++.|..|+||||++..||..+   |.  -.+|+|
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d   37 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEY---GL--AHLSTG   37 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh---Cc--eEEehh
Confidence            345666899999999999999887   44  456665

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=92.78  E-value=0.094  Score=44.22  Aligned_cols=32  Identities=34%  Similarity=0.229  Sum_probs=25.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++++.|-.|+||||++..||..+   |.  ..+|+|
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l---~~--~~i~~d   36 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQEL---GF--KKLSTG   36 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence            466778999999999999998866   43  566765

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=92.75  E-value=0.081  Score=50.02  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=28.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ++++++|-.|+||||++..||..+     ..-+||+|..
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~   74 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDKM   74 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence            588999999999999999998754     3679999954

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=92.70  E-value=0.043  Score=46.19  Aligned_cols=30  Identities=30%  Similarity=0.366  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEE
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVL   60 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVL   60 (365)
                      +.++++.|-.|+||||++..||..+   |..++
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l---~~~~i   34 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERL---PGSFV   34 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHS---TTCEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhc---CCCEE
Confidence            3577888999999999999987654   55554

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=92.64  E-value=0.05  Score=47.90  Aligned_cols=33  Identities=27%  Similarity=0.281  Sum_probs=25.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +.++++.|..|+||||++..||..+   |.  ..+|+|
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d   39 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHF---EL--KHLSSG   39 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHS---SS--EEEEHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc---CC--eEEech
Confidence            3567778999999999999998754   43  466765

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=92.60  E-value=0.075  Score=48.75  Aligned_cols=34  Identities=24%  Similarity=0.168  Sum_probs=26.6

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +.++++.|-.|+||||++..|+..+  .|  ...+|.|
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~--~~--~~~i~~D   35 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKN--PG--FYNINRD   35 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHS--TT--EEEECHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhC--CC--cEEeccc
Confidence            3678899999999999999988732  23  5677776

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=92.60  E-value=0.13  Score=45.31  Aligned_cols=39  Identities=23%  Similarity=0.502  Sum_probs=30.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCC-CEEEEeCCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRP-SVLIISTDPAH   68 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~-rVLLiD~D~~~   68 (365)
                      +++++.|-.|+||||.+..|+.+|...|. .|. +--.|.+
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~-~~rep~~   43 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMV-FTREPGG   43 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE-EEESSCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcce-eeeCCCC
Confidence            45677789999999999999999999998 564 4444543

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=92.57  E-value=0.11  Score=47.22  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=24.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ..-+++.|.+|+||||++.++|..+   +.++.-+++
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~   84 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATET---NATFIRVVG   84 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence            3456777999999999999997754   555555543

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=92.57  E-value=0.11  Score=44.94  Aligned_cols=28  Identities=29%  Similarity=0.311  Sum_probs=23.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEV   55 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~   55 (365)
                      ...+++.|.+|+||||++..++..+...
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~   72 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLNCE   72 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            3477888999999999999999887644

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=92.48  E-value=0.061  Score=44.83  Aligned_cols=32  Identities=28%  Similarity=0.414  Sum_probs=25.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++++.|..|+||||++..||..+   |  ...+|.|
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l---~--~~~id~d   36 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSD   36 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT---T--CEEEEHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh---C--CCEEecc
Confidence            467788999999999999988765   3  3567766

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=92.25  E-value=0.15  Score=50.97  Aligned_cols=50  Identities=12%  Similarity=0.130  Sum_probs=39.3

Q ss_pred             hhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           17 GSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        17 ~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      +.|+.+++..  .-.++.+.|..|+||||++..++..++..|.+++.+++..
T Consensus       268 ~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee  319 (525)
T 1tf7_A          268 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE  319 (525)
T ss_dssp             HHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             HHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence            4467776542  1236777899999999999999999888899999888764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=92.24  E-value=0.063  Score=46.10  Aligned_cols=31  Identities=23%  Similarity=0.332  Sum_probs=26.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ++.++|..|+||||++..||..+   |  +-++|.|
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l---g--~~~~d~d   34 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL---G--VPYLSSG   34 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH---T--CCEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc---C--Cceeccc
Confidence            77888999999999999998866   3  4677887

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=92.21  E-value=0.12  Score=44.45  Aligned_cols=32  Identities=25%  Similarity=0.310  Sum_probs=25.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +.++.+.|..|+||||++..||.    .|..  ++|+|
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~----lg~~--~id~d   33 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD----LGVP--LVDAD   33 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT----TTCC--EEEHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH----CCCc--ccchH
Confidence            45778889999999999988876    4654  56887

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.19  E-value=0.074  Score=53.17  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=30.0

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .+.++++|..|+||||+|..+|..+   |..++-+++..
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~  112 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASD  112 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCC
Confidence            4577889999999999999998876   77788777653

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=92.19  E-value=0.089  Score=53.08  Aligned_cols=42  Identities=19%  Similarity=0.196  Sum_probs=30.3

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHH---H-HCCCCEEEEeCCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILL---A-EVRPSVLIISTDPA   67 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~l---a-~~G~rVLLiD~D~~   67 (365)
                      ...+++.++|-||+||||+|..++...   . .....|.-++.+..
T Consensus       145 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~  190 (591)
T 1z6t_A          145 GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ  190 (591)
T ss_dssp             TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence            346788899999999999999987643   2 22234777776543

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=92.16  E-value=0.13  Score=44.44  Aligned_cols=37  Identities=27%  Similarity=0.266  Sum_probs=29.1

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ..++.+.|..|+||||++..++-.+..   ++.+++.|+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~   42 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY   42 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence            456667788999999999999887642   5889998853

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=92.15  E-value=0.14  Score=48.67  Aligned_cols=45  Identities=20%  Similarity=0.203  Sum_probs=33.2

Q ss_pred             hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873            9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      ++..+.+...+...+..+....+++.|..|+||||++..||..+.
T Consensus         5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A            5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            334445555666666655555677889999999999999998875

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=92.14  E-value=0.11  Score=43.06  Aligned_cols=31  Identities=29%  Similarity=0.287  Sum_probs=24.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ++++.|-.|+||||++..|+..+   |.  -++|+|
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l---~~--~~i~~d   32 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL---NI--PFYDVD   32 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH---TC--CEEEHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh---CC--CEEECc
Confidence            46778999999999999998876   44  356776

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=92.12  E-value=0.072  Score=46.62  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=21.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +.++++.|..|+||||++..||..+
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3467778899999999999999876

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=92.08  E-value=0.16  Score=46.85  Aligned_cols=44  Identities=20%  Similarity=0.261  Sum_probs=33.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhh
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ   75 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~   75 (365)
                      ..+++.|..|+|||++|..++..+   +.++..+++..-.....+++
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~~~l~~   82 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKPGDLAA   82 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCChHHHHH
Confidence            456778999999999999998866   56778888775555444444

>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0

Probab=92.07  E-value=0.24  Score=48.53  Aligned_cols=51  Identities=22%  Similarity=0.184  Sum_probs=41.0

Q ss_pred             CCeEEEEEe---CCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhccc
Q 017873           26 DSLKWVFVG---GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRF   78 (365)
Q Consensus        26 ~~~~i~~~s---gKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~   78 (365)
                      .++-|++++   -+-|+||||++..|+.+|.+.|+++.+.  =.+||+.-.||.+-
T Consensus        42 ~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~~--lRePSlGP~FGiKG   95 (543)
T 3do6_A           42 DGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVT--LREPSLGPTLGLKG   95 (543)
T ss_dssp             CCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEE--ECCCCHHHHHHSCC
T ss_pred             CCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEEE--EecCCCCCcCCccc
Confidence            355565554   3789999999999999999999998653  46789999999873

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=92.05  E-value=0.11  Score=52.35  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=21.0

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHH
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSI   50 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~   50 (365)
                      ..+++.+.|-||+||||+|..++.
T Consensus       151 ~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          151 DSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            457888889999999999998885

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=92.04  E-value=0.098  Score=52.57  Aligned_cols=38  Identities=13%  Similarity=-0.049  Sum_probs=30.6

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|..+..-....+...+..+...++|+. +|+|+.
T Consensus       107 D~allVvDa~~g~~~~t~~~~~~~~~~~iPii-vviNK~  144 (528)
T 3tr5_A          107 DSALMVIDAAKGVEPRTIKLMEVCRLRHTPIM-TFINKM  144 (528)
T ss_dssp             SEEEEEEETTTCSCHHHHHHHHHHHTTTCCEE-EEEECT
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEeCC
Confidence            46777777766666778889999999999874 889998

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=91.92  E-value=0.17  Score=44.15  Aligned_cols=34  Identities=24%  Similarity=0.279  Sum_probs=28.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      +.+++-|--|+||||.+..|+..|. .|++|++.-
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~   36 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTR   36 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence            4667789999999999999999996 588887664

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=91.91  E-value=0.1  Score=47.83  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=26.6

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .+.++++.|..|+||||++..|+ .   .|.  -+||+|
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La-~---lg~--~~id~D  106 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK-N---LGA--YIIDSD  106 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH-H---HTC--EEEEHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH-H---CCC--cEEehh
Confidence            45678888999999999999998 3   365  568887

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=91.87  E-value=0.17  Score=46.14  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=27.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .-+++.|..|+|||+++..+|..+   +.+++.+++.
T Consensus        51 ~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~   84 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEAT   84 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcch
Confidence            345667999999999999999877   6677777765

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=91.86  E-value=0.21  Score=44.39  Aligned_cols=35  Identities=20%  Similarity=0.204  Sum_probs=27.1

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .+-+++.|..|+|||++|.++|..+   +.++..+++.
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~   73 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGA   73 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechH
Confidence            3456788999999999999998865   5566666654

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=91.82  E-value=0.11  Score=48.14  Aligned_cols=35  Identities=17%  Similarity=0.077  Sum_probs=28.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .+++++|..|+||||++..++..+   +.+++.+++..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~   65 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLRK   65 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEchh
Confidence            478889999999999999988765   34588898763

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=91.80  E-value=0.15  Score=52.12  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=29.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHH----CCCCEEEEe
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAE----VRPSVLIIS   63 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~----~G~rVLLiD   63 (365)
                      .++++++|.+|+||||+.+.+...+..    .|.+|+++-
T Consensus       164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~A  203 (608)
T 1w36_D          164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA  203 (608)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEe
Confidence            467888999999999999999888874    466787763

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=91.79  E-value=0.11  Score=45.59  Aligned_cols=36  Identities=14%  Similarity=0.297  Sum_probs=27.0

Q ss_pred             hhHHhhhcCCC-eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           17 GSVRNILEQDS-LKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        17 ~~l~~~~~~~~-~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      ..|..++.+.+ +.-+++.|.+|+||||+|.++|..+
T Consensus        46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            34555555433 3357888999999999999999987

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=91.67  E-value=0.13  Score=43.85  Aligned_cols=24  Identities=33%  Similarity=0.333  Sum_probs=20.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      ++++.|-.|+||||++..||..+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            467789999999999999998773

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=91.65  E-value=0.13  Score=45.48  Aligned_cols=32  Identities=25%  Similarity=0.206  Sum_probs=25.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..+++.|..|+||||++..||..+   |  ...+|+|
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d   48 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNF---C--VCHLATG   48 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence            456778999999999999999886   3  3566765

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=91.53  E-value=0.11  Score=45.14  Aligned_cols=30  Identities=23%  Similarity=0.161  Sum_probs=23.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++.|..|+||||++..||..+   |..  .+|+|
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~---g~~--~i~~d   32 (214)
T 1e4v_A            3 IILLGAPVAGKGTQAQFIMEKY---GIP--QISTG   32 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH---CCC--EEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---CCe--EEeHH
Confidence            4677899999999999999876   553  46654

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=91.52  E-value=0.19  Score=48.63  Aligned_cols=34  Identities=29%  Similarity=0.398  Sum_probs=28.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      +++++++|..|+||||++..||..+.     .-+|++|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence            46788999999999999999998773     35799984

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=91.47  E-value=0.14  Score=44.42  Aligned_cols=30  Identities=27%  Similarity=0.197  Sum_probs=23.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++.|..|+||||+|..||..+   |.  ..+|+|
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d   32 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKY---EI--PHISTG   32 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH---CC--CEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---CC--cEeeHH
Confidence            5667999999999999998765   44  456664

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=91.40  E-value=0.22  Score=47.65  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=31.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++.|..|+||||+...++..+...|.+|+++|-+
T Consensus        38 ~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~   72 (392)
T 4ag6_A           38 WTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE   72 (392)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             eEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46679999999999999999988889999998765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=91.36  E-value=0.31  Score=47.72  Aligned_cols=21  Identities=29%  Similarity=0.343  Sum_probs=16.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILS   49 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA   49 (365)
                      ..+++-|.+||||||+.-.+.
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~   44 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIA   44 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHE
T ss_pred             CEEEEECCCCCcHHHHHHHHh
Confidence            345666999999999988773

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=91.26  E-value=0.14  Score=50.47  Aligned_cols=27  Identities=26%  Similarity=0.249  Sum_probs=22.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAE   54 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~   54 (365)
                      ..-+++.|.+|||||+++-.+|..+..
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~l~~  227 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQIIN  227 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence            334467799999999999999999875

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=91.26  E-value=0.15  Score=47.17  Aligned_cols=46  Identities=15%  Similarity=0.262  Sum_probs=33.4

Q ss_pred             hHHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        18 ~l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .|...+.+ ....+++++|..|+|||+++.++|..+   |.+++-+++..
T Consensus        37 ~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~   83 (324)
T 3u61_B           37 TFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSD   83 (324)
T ss_dssp             HHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTT
T ss_pred             HHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccc
Confidence            34444443 334678999999999999999998765   66777777643

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=91.26  E-value=0.17  Score=44.38  Aligned_cols=31  Identities=19%  Similarity=0.219  Sum_probs=24.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ++++.|..|+||||++..||..+   |.  ..+++|
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l---g~--~~i~~d   32 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY---SL--AHIESG   32 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh---CC--eEEchH
Confidence            46788999999999999999877   44  456664

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=91.24  E-value=0.18  Score=44.60  Aligned_cols=26  Identities=35%  Similarity=0.336  Sum_probs=22.5

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      ..+|+|+-|.+|+||||.|..||..+
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45688888999999999999999876

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=91.21  E-value=0.3  Score=43.62  Aligned_cols=36  Identities=17%  Similarity=-0.045  Sum_probs=33.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      -.|.|+.|.-|.||||-+...+..+..+|++|+++-
T Consensus        19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k   54 (234)
T 2orv_A           19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   54 (234)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence            357899999999999999999999999999999998

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=91.18  E-value=0.21  Score=49.25  Aligned_cols=40  Identities=18%  Similarity=0.106  Sum_probs=33.6

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++.++++.|-.|+||||++..||..+...+.++..++.|
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d   76 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG   76 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecc
Confidence            3455778889999999999999999998888888887766

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=91.18  E-value=0.093  Score=45.34  Aligned_cols=24  Identities=29%  Similarity=0.239  Sum_probs=20.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      ++++++|..|+||||++..|+..+
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            467778999999999999998866

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=91.15  E-value=0.23  Score=53.93  Aligned_cols=44  Identities=16%  Similarity=0.200  Sum_probs=33.5

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHH--HH-HCCCCEEEEeCCCCCCh
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSIL--LA-EVRPSVLIISTDPAHNL   70 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~--la-~~G~rVLLiD~D~~~~l   70 (365)
                      +.+++.+.|-||+||||+|..++..  .. .....++.++.+...+.
T Consensus       149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~  195 (1221)
T 1vt4_I          149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP  195 (1221)
T ss_dssp             SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSH
T ss_pred             CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCH
Confidence            4578888999999999999998853  22 33456899998866554

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=91.09  E-value=0.09  Score=48.78  Aligned_cols=55  Identities=15%  Similarity=0.224  Sum_probs=39.9

Q ss_pred             hhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        10 ~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ..++.+...+.......  .-+++.|..|+|||++|.+++....+.+...+.+++..
T Consensus         9 ~~~~~~~~~~~~~a~~~--~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~   63 (304)
T 1ojl_A            9 PAMQHLLNEIAMVAPSD--ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAA   63 (304)
T ss_dssp             HHHHHHHHHHHHHCSTT--SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred             HHHHHHHHHHHHHhCCC--CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence            44555555555554332  33567799999999999999987777788888888864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=91.05  E-value=0.24  Score=44.13  Aligned_cols=38  Identities=29%  Similarity=0.331  Sum_probs=28.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHC-----CCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEV-----RPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~-----G~rVLLiD~D   65 (365)
                      ..++-+.|..|+||||++..++..+...     ..++.+++.|
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d   67 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQD   67 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCC
Confidence            3567777999999999999998876321     2457778877

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=90.75  E-value=0.23  Score=43.10  Aligned_cols=32  Identities=25%  Similarity=0.259  Sum_probs=25.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..++++.|..|+||||++..||.    .|.  -++|+|
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~----lg~--~~id~D   35 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD----LGI--NVIDAD   35 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH----TTC--EEEEHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH----cCC--EEEEcc
Confidence            35778889999999999998875    464  678887

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=90.59  E-value=0.1  Score=47.94  Aligned_cols=46  Identities=24%  Similarity=0.360  Sum_probs=30.6

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--CEEEEeC
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRP--SVLIIST   64 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~--rVLLiD~   64 (365)
                      |...+.++....+++.|.+|+||||++..+|..+...+.  .++-+++
T Consensus        33 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~   80 (323)
T 1sxj_B           33 LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA   80 (323)
T ss_dssp             HHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred             HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence            444444432222788899999999999999998864332  3444444

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=90.52  E-value=0.13  Score=44.06  Aligned_cols=32  Identities=31%  Similarity=0.389  Sum_probs=27.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      +++.|-.|+||||+|..+|..    |.+++.+++..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~   33 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQ   33 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred             EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence            577789999999999998754    78899999864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=90.45  E-value=0.15  Score=44.16  Aligned_cols=30  Identities=27%  Similarity=0.163  Sum_probs=23.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++.|..|+||||+|..||..+   |.  ..+|+|
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d   32 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKY---GI--PHISTG   32 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS---SC--CEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---CC--cEEeHH
Confidence            5567999999999999998654   44  456665

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=90.40  E-value=0.084  Score=48.54  Aligned_cols=46  Identities=24%  Similarity=0.326  Sum_probs=29.9

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--CEEEEeC
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRP--SVLIIST   64 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~--rVLLiD~   64 (365)
                      |...+.++...-+++.|..|+||||++..+|..+...+.  .++-+++
T Consensus        37 l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~   84 (327)
T 1iqp_A           37 LKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA   84 (327)
T ss_dssp             HHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred             HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence            334443332223778899999999999999998864432  3444443

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=90.31  E-value=0.95  Score=45.13  Aligned_cols=50  Identities=18%  Similarity=0.187  Sum_probs=33.3

Q ss_pred             hhHHhhhc-C-CCeEEEEEeCCCCCcHHHHHHHHHH-HHHHCCCCEEEEeCCC
Q 017873           17 GSVRNILE-Q-DSLKWVFVGGKGGVGKTTCSSILSI-LLAEVRPSVLIISTDP   66 (365)
Q Consensus        17 ~~l~~~~~-~-~~~~i~~~sgKGGvGKTT~aa~lA~-~la~~G~rVLLiD~D~   66 (365)
                      +.|+.+.- . ..-.++.+.|..|+||||++..++. .+...+..++.|+...
T Consensus        26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~   78 (525)
T 1tf7_A           26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE   78 (525)
T ss_dssp             TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred             hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence            34666554 1 1123566668999999999999653 3334467788998765

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=90.23  E-value=0.21  Score=42.25  Aligned_cols=33  Identities=30%  Similarity=0.440  Sum_probs=24.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++++.|..|+||||++..++.   ..+. ...+|.|
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~---~~~g-~~~i~~d   35 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA---QLDN-SAYIEGD   35 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH---HSSS-EEEEEHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc---ccCC-eEEEccc
Confidence            5678889999999999999975   2222 3556655

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=90.22  E-value=0.18  Score=44.09  Aligned_cols=27  Identities=22%  Similarity=0.211  Sum_probs=22.9

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      .++.|+.++||.|+||+|+|-.+...+
T Consensus         9 ~~~~II~itGk~~SGKd~va~~l~~~~   35 (202)
T 3ch4_B            9 APRLVLLFSGKRKSGKDFVTEALQSRL   35 (202)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHHc
Confidence            467899999999999999998876644

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=90.17  E-value=0.18  Score=43.70  Aligned_cols=25  Identities=24%  Similarity=0.210  Sum_probs=20.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      ..+++++|..|+||||++..|+..+
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            3577888999999999999887654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=90.11  E-value=0.41  Score=44.61  Aligned_cols=42  Identities=33%  Similarity=0.374  Sum_probs=33.5

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-C-CCEEEEeCCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV-R-PSVLIISTDPA   67 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G-~rVLLiD~D~~   67 (365)
                      ....++.+.|..|+||||++..++..+... | .+|.+|..|..
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~  131 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF  131 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence            344677788999999999999999988743 5 57888888853

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=90.10  E-value=0.11  Score=48.57  Aligned_cols=49  Identities=20%  Similarity=0.316  Sum_probs=32.5

Q ss_pred             hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .|...+..+...-+++.|..|+||||++-.+|..+...+.++.++..+.
T Consensus        36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~   84 (340)
T 1sxj_C           36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA   84 (340)
T ss_dssp             HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred             HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence            3444554432222677899999999999999999875444444555443

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=90.00  E-value=0.26  Score=46.78  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=27.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .-+++.|..|+|||++|..+|..+   |.++..+++.
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~  106 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDAT  106 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecch
Confidence            346777999999999999999876   6777777764

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=89.91  E-value=0.35  Score=43.13  Aligned_cols=31  Identities=26%  Similarity=0.270  Sum_probs=23.9

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      -+++.|..|+||||++.++|..+   +..++.++
T Consensus        47 ~vll~G~~GtGKT~la~~la~~~---~~~~~~i~   77 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTIS   77 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH---TCCEEEEC
T ss_pred             eEEEECcCCCCHHHHHHHHHHHc---CCCEEEEe
Confidence            36778999999999999999865   44555554

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=89.90  E-value=0.11  Score=50.38  Aligned_cols=36  Identities=19%  Similarity=0.148  Sum_probs=27.5

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ....+++++|-.|+||||++..|+..+   |  ...||.|.
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~---~--~~~i~~D~  291 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA---G--YVHVNRDT  291 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG---T--CEECCGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc---C--cEEEccch
Confidence            345788899999999999999887643   3  45666664

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=89.81  E-value=0.42  Score=49.97  Aligned_cols=36  Identities=25%  Similarity=0.231  Sum_probs=31.6

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .+++.|..|+|||++|.++|..+...+..++-+|+.
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s  558 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMS  558 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEech
Confidence            577889999999999999999998778888888864

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=89.75  E-value=0.34  Score=44.92  Aligned_cols=44  Identities=20%  Similarity=0.202  Sum_probs=33.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcc
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~   77 (365)
                      +++.|..|+|||+++.++|..+   +..+.-+.+.+.....+++|..
T Consensus        49 vll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~~~~~~~l~g~~   92 (331)
T 2r44_A           49 ILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTPDLLPSDLIGTM   92 (331)
T ss_dssp             EEEESCCCHHHHHHHHHHHHHT---TCCEEEEECCTTCCHHHHHEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHh---CCCeEEEecCCCCChhhcCCce
Confidence            5667999999999999998865   6677778887665556666643

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=89.67  E-value=7.2  Score=36.89  Aligned_cols=38  Identities=11%  Similarity=-0.123  Sum_probs=29.7

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEc-Cc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN-QV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN-~~  263 (365)
                      ..+++|.. ..-...++.+.+..+...|++..-+++| +.
T Consensus        85 D~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~  123 (370)
T 2elf_A           85 DIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSD  123 (370)
T ss_dssp             SEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGG
T ss_pred             CEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            35666666 6666678888888899999998668888 88

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=89.61  E-value=0.2  Score=42.35  Aligned_cols=24  Identities=25%  Similarity=0.273  Sum_probs=20.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +++++.|..|+||||++..|+..+
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            477888999999999999988754

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=89.55  E-value=0.34  Score=49.52  Aligned_cols=37  Identities=27%  Similarity=0.363  Sum_probs=30.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D   65 (365)
                      .+.++.|.+|+||||+.+.++..+.+ .+.+|+++..-
T Consensus       196 ~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t  233 (624)
T 2gk6_A          196 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS  233 (624)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence            36778899999999999999998886 67888877653

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=89.49  E-value=0.27  Score=45.39  Aligned_cols=33  Identities=15%  Similarity=0.092  Sum_probs=27.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .+++++|..|+||||++..++..+   |  ++.+++..
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~   64 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCRE   64 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeec
Confidence            578889999999999999987653   3  88888753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=89.46  E-value=0.27  Score=45.76  Aligned_cols=47  Identities=21%  Similarity=0.330  Sum_probs=31.0

Q ss_pred             hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHH---CCCCEEEEeC
Q 017873           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAE---VRPSVLIIST   64 (365)
Q Consensus        18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~---~G~rVLLiD~   64 (365)
                      .|...+......-+++.|..|+||||++..+|..+..   ...++.-+++
T Consensus        48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~   97 (353)
T 1sxj_D           48 VLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA   97 (353)
T ss_dssp             HHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred             HHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence            3444554442222678899999999999999999863   2344544443

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=89.45  E-value=0.45  Score=45.23  Aligned_cols=45  Identities=22%  Similarity=0.301  Sum_probs=32.2

Q ss_pred             hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEe
Q 017873           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIS   63 (365)
Q Consensus        18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD   63 (365)
                      .+..+....+ .++.+.|..|+||||+...++-.+... |.+++.+.
T Consensus       114 ~l~~l~~~~~-g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e  159 (356)
T 3jvv_A          114 VFKRVSDVPR-GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE  159 (356)
T ss_dssp             HHHHHHHCSS-EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             HHHHHHhCCC-CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence            3444444433 377888999999999999999888764 55555444

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=89.38  E-value=0.092  Score=42.76  Aligned_cols=40  Identities=15%  Similarity=0.170  Sum_probs=26.9

Q ss_pred             hhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHH
Q 017873           10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSIL   51 (365)
Q Consensus        10 ~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~   51 (365)
                      +.++.+...+....... .. +++.|..|+|||++|.+++..
T Consensus        11 ~~~~~l~~~~~~~~~~~-~~-vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           11 AAIQEMNREVEAAAKRT-SP-VFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             HHHHHHHHHHHHHHTCS-SC-EEEEEETTCCHHHHHGGGCCT
T ss_pred             HHHHHHHHHHHHHhCCC-Cc-EEEECCCCccHHHHHHHHHHh
Confidence            44555666666555433 22 566899999999998887664

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=89.36  E-value=0.34  Score=42.30  Aligned_cols=31  Identities=29%  Similarity=0.397  Sum_probs=24.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +.+++.|..|+||||+|..|+    ++|.  -+|..|
T Consensus        35 ~~ilI~GpsGsGKStLA~~La----~~g~--~iIsdD   65 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELV----QRGH--RLIADD   65 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHH----TTTC--EEEESS
T ss_pred             EEEEEECCCCCCHHHHHHHHH----HhCC--eEEecc
Confidence            456778999999999887765    4566  677777

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=89.31  E-value=0.58  Score=42.32  Aligned_cols=46  Identities=17%  Similarity=0.303  Sum_probs=31.6

Q ss_pred             hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeC
Q 017873           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIST   64 (365)
Q Consensus        18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~   64 (365)
                      -|+.+. -....++.+.|..|+||||+...++-.+... ..++.+.+-
T Consensus        16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~   62 (261)
T 2eyu_A           16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED   62 (261)
T ss_dssp             HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence            344443 2344577788999999999999999888643 344655543

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=89.20  E-value=0.28  Score=42.63  Aligned_cols=32  Identities=19%  Similarity=0.333  Sum_probs=24.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++.+.|..|+||||++..|+..+   |  .-.+|+|
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~---g--~~~~d~g   37 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEAL---Q--WHLLDSG   37 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh---C--CCcccCc
Confidence            356777999999999999998765   3  3456765

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=89.19  E-value=0.27  Score=43.72  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=21.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +.++++.|..|+||||++..+|..+
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3567778999999999999999876

>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}

Probab=89.14  E-value=4.5  Score=34.61  Aligned_cols=41  Identities=27%  Similarity=0.357  Sum_probs=34.1

Q ss_pred             CCeEEEEEeCCCCCcHHHH-HHHHHHHHHHCCCCEEEEeCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTC-SSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~-aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ..+.+.++||-||++|++- .+.|+......|++|.++.-|.
T Consensus        49 s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~   90 (189)
T 2l8b_A           49 DRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADR   90 (189)
T ss_dssp             HSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTT
T ss_pred             cCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCch
Confidence            3567899999999999988 5566666668999999999883

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=89.13  E-value=0.23  Score=52.75  Aligned_cols=40  Identities=18%  Similarity=0.184  Sum_probs=31.0

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHH-------CCCCEEEEeCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAE-------VRPSVLIISTD   65 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~-------~G~rVLLiD~D   65 (365)
                      ....-+++.|.+|+||||++..+|..+..       .|.+++.+|+.
T Consensus       189 ~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~  235 (854)
T 1qvr_A          189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG  235 (854)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-
T ss_pred             CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH
Confidence            33334567799999999999999999876       47788888764

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=89.12  E-value=5.5  Score=38.45  Aligned_cols=39  Identities=13%  Similarity=0.068  Sum_probs=28.8

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|.....-...++.+.+..+...|++..-+|+|+.
T Consensus       129 D~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~  167 (434)
T 1zun_B          129 DLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKM  167 (434)
T ss_dssp             SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECT
T ss_pred             CEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcC
Confidence            467777776555456777777888888887556889999

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=89.06  E-value=0.25  Score=49.92  Aligned_cols=38  Identities=32%  Similarity=0.392  Sum_probs=31.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCC-CCEEEEeCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVR-PSVLIISTDP   66 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G-~rVLLiD~D~   66 (365)
                      .++++.|..|+||||++..||..+...+ .++.++|.|.
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~  408 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI  408 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred             eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence            4667779999999999999999997554 5687888873

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=88.98  E-value=0.27  Score=46.14  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=25.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      ..+++.|..|+|||++|.++|..+... .....+.
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~l~~~-~~~~~~~  104 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQALGPD-TPFTAIA  104 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCSS-CCEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhccc-CCccccc
Confidence            467778999999999999999987522 2344444

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=88.84  E-value=0.36  Score=45.66  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=25.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      .+-+++.|..|+|||++|.++|..+   |..++.+++
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~  150 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQS---GATFFSISA  150 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEeh
Confidence            3456777999999999999998754   566666655

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=88.75  E-value=0.39  Score=44.53  Aligned_cols=35  Identities=23%  Similarity=0.401  Sum_probs=27.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      ..+++.|..|+|||++|..+|..   .+..+..+++..
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~---~~~~~~~~~~~~   90 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE---MSANIKTTAAPM   90 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH---TTCCEEEEEGGG
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH---hCCCeEEecchh
Confidence            35678899999999999999665   467777777653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=88.67  E-value=0.35  Score=52.69  Aligned_cols=41  Identities=20%  Similarity=0.192  Sum_probs=31.3

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHH----CCCCEEEEeCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAE----VRPSVLIISTDP   66 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~----~G~rVLLiD~D~   66 (365)
                      ...+++.+.|-||+||||+|..++.....    ....|..++...
T Consensus       145 ~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~  189 (1249)
T 3sfz_A          145 GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK  189 (1249)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence            45677888899999999999988876432    234688888765

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=88.64  E-value=0.19  Score=43.20  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=18.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHH
Q 017873           30 WVFVGGKGGVGKTTCSSILSIL   51 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~   51 (365)
                      .++++|..|+||||+...|...
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4788999999999998876543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=88.27  E-value=0.31  Score=41.57  Aligned_cols=24  Identities=25%  Similarity=0.261  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      .++++.|..|+||||++..|+..+
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            466777999999999999887755

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=88.25  E-value=0.3  Score=45.47  Aligned_cols=39  Identities=18%  Similarity=0.149  Sum_probs=31.9

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ...+++++|..|+||||+.-.++..  ..|+|+.+|.-|..
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~--~~~~~~aVi~~d~G   41 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFG   41 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSSCC
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhh--cCCCcEEEEEecCc
Confidence            3568888999999999998887764  37899999988753

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=88.25  E-value=0.29  Score=44.62  Aligned_cols=47  Identities=17%  Similarity=0.276  Sum_probs=31.1

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--CEEEEeCC
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRP--SVLIISTD   65 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~--rVLLiD~D   65 (365)
                      |...+.++...-+++.|..|+||||++..+|..+...+.  .++-+++.
T Consensus        29 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~   77 (319)
T 2chq_A           29 LKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS   77 (319)
T ss_dssp             HHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred             HHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence            344444333223778899999999999999998854432  35555554

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=88.22  E-value=0.37  Score=45.47  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=27.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .-+++.|..|+|||++|.++|..+   |.+.+-+++-
T Consensus        52 ~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~~   85 (363)
T 3hws_A           52 SNILLIGPTGSGKTLLAETLARLL---DVPFTMADAT   85 (363)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc---CCCEEEechH
Confidence            345667999999999999999876   6667777653

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=88.19  E-value=0.33  Score=42.18  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=20.6

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      .++++++|..|+||||+...|+..+
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhhC
Confidence            3577789999999999999887643

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=88.17  E-value=0.66  Score=44.25  Aligned_cols=45  Identities=18%  Similarity=0.303  Sum_probs=32.4

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeC
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIST   64 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~   64 (365)
                      |+.+.- ....++.+.|..|+||||+...++..+... ..+|++++-
T Consensus       128 l~~l~~-~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~  173 (372)
T 2ewv_A          128 VLELCH-RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED  173 (372)
T ss_dssp             HHHHTT-SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred             HHHHhh-cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence            444432 334567778999999999999999988764 455767663

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=88.11  E-value=0.42  Score=43.93  Aligned_cols=33  Identities=24%  Similarity=0.246  Sum_probs=24.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      .+.+++.|..|+||||++.++|..+   +...+.++
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~   81 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISIK   81 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred             CceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEE
Confidence            4456777999999999999998764   45555554

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=88.10  E-value=0.47  Score=50.05  Aligned_cols=37  Identities=27%  Similarity=0.363  Sum_probs=30.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D   65 (365)
                      .+.++.|.+|+||||+.+.++..+.. .+.+|+++-.-
T Consensus       372 ~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~t  409 (800)
T 2wjy_A          372 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS  409 (800)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESS
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCc
Confidence            46788999999999999999998886 67888877543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=88.04  E-value=0.44  Score=44.37  Aligned_cols=35  Identities=17%  Similarity=0.254  Sum_probs=26.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +-+++.|..|+|||++|.++|..+  .+..++.+++.
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~   80 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSS   80 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECC
T ss_pred             ceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhH
Confidence            456677999999999999999875  34555656553

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=87.98  E-value=0.45  Score=43.26  Aligned_cols=34  Identities=26%  Similarity=0.242  Sum_probs=25.1

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ..-+++.|..|+||||++.++|..+   +....-+++
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~   87 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATEC---SATFLNISA   87 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEES
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeH
Confidence            3456777999999999999998754   444554544

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=87.94  E-value=0.39  Score=45.01  Aligned_cols=26  Identities=31%  Similarity=0.397  Sum_probs=22.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      ...++++|..|+||||++..+|..+.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34678889999999999999998875

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=87.93  E-value=0.38  Score=41.93  Aligned_cols=22  Identities=27%  Similarity=0.220  Sum_probs=18.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHH
Q 017873           31 VFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +++-|.+|+||+|.|..||..+
T Consensus         3 Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            3 LVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            4556899999999999999865

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=87.80  E-value=0.35  Score=41.28  Aligned_cols=25  Identities=24%  Similarity=0.251  Sum_probs=19.5

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPS   58 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~r   58 (365)
                      -+++.|..|+||||+|..|..    +|++
T Consensus        18 gvli~G~SGaGKStlal~L~~----rG~~   42 (181)
T 3tqf_A           18 GVLITGEANIGKSELSLALID----RGHQ   42 (181)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH----TTCE
T ss_pred             EEEEEcCCCCCHHHHHHHHHH----cCCe
Confidence            346678999999999887765    6763

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.78  E-value=0.64  Score=45.34  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=28.0

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      -..++=+.+.|.+|+|||++|.++|..+   |...+.+++
T Consensus       203 ~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~  239 (428)
T 4b4t_K          203 IDPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNG  239 (428)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEG
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Confidence            3455666777999999999999999865   555666654

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=87.72  E-value=0.63  Score=45.23  Aligned_cols=46  Identities=20%  Similarity=0.254  Sum_probs=33.4

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      |+.++. ....++.+.|..|+||||+...++-.+.....++.+++-+
T Consensus       159 L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~  204 (418)
T 1p9r_A          159 FRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP  204 (418)
T ss_dssp             HHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred             HHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence            455543 3456788889999999999999988876555567666533

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=87.67  E-value=0.49  Score=39.65  Aligned_cols=20  Identities=25%  Similarity=0.481  Sum_probs=15.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHH
Q 017873           30 WVFVGGKGGVGKTTCSSILS   49 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA   49 (365)
                      -+++-|.+|+||||+...+.
T Consensus        50 ~i~vvG~~g~GKSsll~~l~   69 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLT   69 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            34555899999999988764

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=87.44  E-value=0.39  Score=42.83  Aligned_cols=33  Identities=30%  Similarity=0.292  Sum_probs=26.3

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +.++.+.|..|+||||++..+|..+   |  ...+|.|
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~l---g--~~~~d~g   41 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARAL---G--ARYLDTG   41 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh---C--CCcccCC
Confidence            3467888999999999999998876   3  3567776

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=87.31  E-value=0.57  Score=43.43  Aligned_cols=34  Identities=15%  Similarity=0.243  Sum_probs=25.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      .+-+++.|..|+|||++|.++|..+   +..+..+++
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~   84 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS   84 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence            3456778999999999999998764   555665554

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=87.14  E-value=0.47  Score=46.45  Aligned_cols=35  Identities=20%  Similarity=0.236  Sum_probs=25.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      +-+++.|.+|+|||++|.++|..+... ...+-+++
T Consensus        64 ~~iLl~GppGtGKT~la~ala~~l~~~-~~~~~~~~   98 (456)
T 2c9o_A           64 RAVLLAGPPGTGKTALALAIAQELGSK-VPFCPMVG   98 (456)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCTT-SCEEEEEG
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHhCCC-ceEEEEeH
Confidence            345668999999999999999986321 44555554

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=87.02  E-value=0.38  Score=47.17  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=27.3

Q ss_pred             hhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        17 ~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      ..|..++......-+++.|..|+||||++..+|..+
T Consensus        39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~   74 (447)
T 3pvs_A           39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA   74 (447)
T ss_dssp             SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence            345556655444567888999999999999999764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=86.98  E-value=0.39  Score=40.88  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      .++.+.|..|+||||++..++-.+
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            466777999999999999988754

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=86.77  E-value=0.54  Score=44.42  Aligned_cols=31  Identities=16%  Similarity=0.322  Sum_probs=24.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      +++.|..|+|||++|.++|..+   +..++.+++
T Consensus        87 iLL~GppGtGKT~la~ala~~~---~~~~~~v~~  117 (355)
T 2qp9_X           87 ILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS  117 (355)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh---CCCEEEeeH
Confidence            5566999999999999999876   455555543

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=86.67  E-value=0.93  Score=39.26  Aligned_cols=38  Identities=16%  Similarity=-0.060  Sum_probs=33.3

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      +-++.|+.|.-|.||||.-...+.....+|++|+++..
T Consensus        19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp   56 (195)
T 1w4r_A           19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY   56 (195)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence            34688999999999999999988888889999999973

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=86.52  E-value=0.89  Score=40.10  Aligned_cols=39  Identities=13%  Similarity=-0.074  Sum_probs=31.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe--CCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS--TDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD--~D~~   67 (365)
                      .|.++.|--|+||||.....+..+..+|++|+++-  .|.+
T Consensus        29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R   69 (219)
T 3e2i_A           29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDR   69 (219)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC----
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCc
Confidence            56688888999999999999999999999999994  4543

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=86.33  E-value=0.61  Score=45.11  Aligned_cols=39  Identities=18%  Similarity=0.234  Sum_probs=31.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~   71 (365)
                      +++.|..|+|||++...+...+...|.+|+++|.  .+...
T Consensus        56 ~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp--kge~~   94 (437)
T 1e9r_A           56 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP--NGDML   94 (437)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE--TTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC--CCchh
Confidence            4556889999999988888888889999999874  44443

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=86.18  E-value=0.44  Score=44.55  Aligned_cols=24  Identities=38%  Similarity=0.580  Sum_probs=21.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      ..+++.|..|+||||++-.+|..+
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            457788999999999999999876

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=85.99  E-value=2  Score=44.27  Aligned_cols=37  Identities=11%  Similarity=0.115  Sum_probs=24.5

Q ss_pred             EEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       226 ~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      .+++|..+..-....+...+..+...++++. +|+|+.
T Consensus       100 ~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i-lv~NKi  136 (665)
T 2dy1_A          100 AALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKL  136 (665)
T ss_dssp             EEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECG
T ss_pred             cEEEEEcCCcccchhHHHHHHHHHHccCCEE-EEecCC
Confidence            4555555544444566677777777787765 678887

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=85.74  E-value=0.59  Score=41.14  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=26.0

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..++.+.|..|+||||++..||..+   |  ...+|+|
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~~l---g--~~~~d~d   48 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAKDF---G--FTYLDTG   48 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc---C--CceecCC
Confidence            3467778999999999999988765   4  3567877

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=85.66  E-value=0.42  Score=44.55  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=20.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHH
Q 017873           31 VFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      +++.|..|+||||++..+|..+-
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~   61 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIF   61 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            77789999999999999999764

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=85.62  E-value=0.72  Score=48.66  Aligned_cols=37  Identities=22%  Similarity=0.392  Sum_probs=31.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D   65 (365)
                      .+.++.|.+|+|||++.+.+...+.+ .+.+||++..-
T Consensus       376 ~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t  413 (802)
T 2xzl_A          376 PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS  413 (802)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence            36778899999999999999888876 68899988754

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=85.58  E-value=1.3  Score=40.89  Aligned_cols=49  Identities=16%  Similarity=0.187  Sum_probs=33.4

Q ss_pred             hhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHH---CCCCEEEEeCC
Q 017873           17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAE---VRPSVLIISTD   65 (365)
Q Consensus        17 ~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~---~G~rVLLiD~D   65 (365)
                      ..|...+.++.....++.|..|+||||++..+|.....   ....++.++.+
T Consensus         7 ~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~   58 (305)
T 2gno_A            7 ETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE   58 (305)
T ss_dssp             HHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred             HHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence            34555665544567788899999999999999986421   12356666553

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=85.52  E-value=0.44  Score=42.13  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=21.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      +++++.|--|+||||++..|+..+.
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            4667778899999999999998763

>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*

Probab=85.48  E-value=1.2  Score=45.32  Aligned_cols=54  Identities=19%  Similarity=0.169  Sum_probs=37.1

Q ss_pred             hhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCC----CCEEEEeCC
Q 017873           11 ELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVR----PSVLIISTD   65 (365)
Q Consensus        11 ~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G----~rVLLiD~D   65 (365)
                      -+..|.+.-+..+...... +++.|-.|+||||+..+-+..+...+    .++|++.+-
T Consensus         6 ~~~~Ln~~Q~~av~~~~~~-~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft   63 (647)
T 3lfu_A            6 LLDSLNDKQREAVAAPRSN-LLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFT   63 (647)
T ss_dssp             HHTTCCHHHHHHHTCCSSC-EEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESS
T ss_pred             hhhcCCHHHHHHHhCCCCC-EEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEecc
Confidence            3455555555555533223 45556789999999999888877653    689999886

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=85.26  E-value=0.53  Score=49.18  Aligned_cols=26  Identities=27%  Similarity=0.285  Sum_probs=22.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAE   54 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~   54 (365)
                      .-+++.|.+|||||++|-.+|..+..
T Consensus       202 ~~vLL~G~pGtGKT~la~~la~~l~~  227 (758)
T 3pxi_A          202 NNPVLIGEPGVGKTAIAEGLAQQIIN  227 (758)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHHhc
Confidence            33567799999999999999999854

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=84.67  E-value=0.58  Score=41.88  Aligned_cols=24  Identities=33%  Similarity=0.386  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      .++.+.|..|+||||++-.||..|
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhc
Confidence            466777999999999999998654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=84.47  E-value=0.74  Score=39.46  Aligned_cols=27  Identities=41%  Similarity=0.443  Sum_probs=23.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVR   56 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G   56 (365)
                      ++.+.|..|+||||+...++-.+...|
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~~~G   29 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHHhhcccCC
Confidence            345669999999999999999888667

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.39  E-value=0.83  Score=44.64  Aligned_cols=37  Identities=19%  Similarity=0.266  Sum_probs=27.6

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..++=+.+.|.+|+|||++|.++|..+   |...+.+++.
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s  249 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPAS  249 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehh
Confidence            444556666999999999999998865   5566666653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=84.33  E-value=0.37  Score=43.09  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=19.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHH
Q 017873           31 VFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +++.|..|+|||++|.++|..+
T Consensus        47 vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            5677999999999999999865

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=84.24  E-value=0.57  Score=42.17  Aligned_cols=32  Identities=28%  Similarity=0.375  Sum_probs=25.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++++.|..|+||||++..||..+   |.  -.+|.|
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~~l---g~--~~~d~d   80 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMARSL---GY--TFFDCD   80 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhc---CC--cEEeCc
Confidence            456777999999999999999876   33  567766

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=84.14  E-value=0.64  Score=40.85  Aligned_cols=24  Identities=21%  Similarity=0.223  Sum_probs=20.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      .+++++|..|+||||+.-.++-.+
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            477888999999999999887654

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=84.12  E-value=4.9  Score=44.14  Aligned_cols=39  Identities=8%  Similarity=-0.015  Sum_probs=28.2

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|.....-...++.+.+..+...|+|..-+++|+.
T Consensus       384 D~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKi  422 (1289)
T 3avx_A          384 DGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKC  422 (1289)
T ss_dssp             SEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECC
T ss_pred             CEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeec
Confidence            466777666544445677777788888988556889999

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=84.05  E-value=0.81  Score=38.73  Aligned_cols=23  Identities=35%  Similarity=0.494  Sum_probs=19.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHH
Q 017873           31 VFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      +.+.|..|+||||+...++-.+.
T Consensus         3 i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            3 IIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            45679999999999999998773

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.96  E-value=0.88  Score=44.41  Aligned_cols=36  Identities=19%  Similarity=0.210  Sum_probs=26.6

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ..++=+.+.|.+|+|||++|.++|..+   |...+.+++
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~  248 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAA  248 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEeh
Confidence            445556667999999999999998764   555666654

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=83.96  E-value=0.79  Score=40.45  Aligned_cols=33  Identities=15%  Similarity=0.068  Sum_probs=27.1

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +.|+.++|..|+||||++..||..+   |.+  ++|.|
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~l---g~~--~~d~~   46 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEEL---GIH--FYDDD   46 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH---TCE--EECHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHc---CCc--EEcHH
Confidence            4688889999999999999999877   543  57766

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=83.83  E-value=1.1  Score=46.78  Aligned_cols=30  Identities=23%  Similarity=0.305  Sum_probs=24.2

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAE   54 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~   54 (365)
                      .....-+++.|..|+|||+++..+|..+..
T Consensus       204 ~~~~~~vlL~G~~GtGKT~la~~la~~l~~  233 (758)
T 1r6b_X          204 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQ  233 (758)
T ss_dssp             SSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence            333445677899999999999999999865

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.74  E-value=0.77  Score=44.37  Aligned_cols=36  Identities=22%  Similarity=0.173  Sum_probs=26.4

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ..++=+.+.|.+|+|||++|.++|..+   |...+.|++
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~  215 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSG  215 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEh
Confidence            444556677999999999999998764   555555554

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=83.65  E-value=0.62  Score=41.33  Aligned_cols=22  Identities=32%  Similarity=0.354  Sum_probs=19.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHH
Q 017873           31 VFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +++.|..|+||||++..+|..+
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6777999999999999998754

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=83.37  E-value=0.38  Score=44.71  Aligned_cols=60  Identities=8%  Similarity=0.095  Sum_probs=45.4

Q ss_pred             hhhhhhhhcchhhHHhhhc----CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873            6 QDQDQELEIPEGSVRNILE----QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus         6 ~~~~~~~~~~~~~l~~~~~----~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .+|+..+..|...|..+=.    .+...++++-|--|+||||....|...|..+|.+|..+..-
T Consensus        60 ~~y~~~l~~lq~~L~~lQ~~~~~~~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~P  123 (304)
T 3czq_A           60 EEYEETLTKLQIELVKVQFWMQATGKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKP  123 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCc
Confidence            3466666666665554432    34467889999999999999999999999999988876543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=83.10  E-value=0.69  Score=39.66  Aligned_cols=25  Identities=28%  Similarity=0.274  Sum_probs=20.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      +++.+.|..|+||||+...++-.+.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4567779999999999999987653

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=83.04  E-value=0.91  Score=44.28  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=25.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      +-+++.|..|+|||++|.++|..+  .+..++.+++
T Consensus       168 ~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~  201 (444)
T 2zan_A          168 RGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISS  201 (444)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeH
Confidence            456667999999999999999875  3455555554

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=82.90  E-value=0.66  Score=38.74  Aligned_cols=24  Identities=21%  Similarity=0.447  Sum_probs=21.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      +.++.|..|+||||+.-++...+.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            677889999999999999988764

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=82.74  E-value=0.85  Score=40.82  Aligned_cols=28  Identities=21%  Similarity=0.286  Sum_probs=21.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCE
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSV   59 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rV   59 (365)
                      .++.++|+.|+||||+|..|+..   .|.++
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~---~g~~~   29 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSN---YSAVK   29 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH---SCEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh---cCCeE
Confidence            56778899999999999887653   56554

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=82.61  E-value=0.62  Score=40.22  Aligned_cols=32  Identities=19%  Similarity=0.289  Sum_probs=25.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .+++++|..|+||||++..||..+   |  .-++|+|
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~---g--~~~~~~d   35 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASEL---S--MIYVDTG   35 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT---T--CEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc---C--CceecCC
Confidence            357788999999999999887754   5  3578877

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=82.56  E-value=1.1  Score=44.47  Aligned_cols=34  Identities=18%  Similarity=0.213  Sum_probs=25.8

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ..-+++.|..|+|||++|.++|..+   +..++.+++
T Consensus       238 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~  271 (489)
T 3hu3_A          238 PRGILLYGPPGTGKTLIARAVANET---GAFFFLING  271 (489)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEH
T ss_pred             CCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEc
Confidence            3456777999999999999987653   666666664

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=82.53  E-value=0.9  Score=37.86  Aligned_cols=38  Identities=11%  Similarity=0.005  Sum_probs=25.1

Q ss_pred             eEEEEeecC-CcchHHHHHHHHHHHHh----CCCCcCeEEEcCc
Q 017873          225 TTFVCVCIP-EFLSLYETERLVQELTK----FEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p-~~~s~~et~~~~~~L~~----~gi~v~~vVvN~~  263 (365)
                      ..+++|... +..+..+....+..+..    .+.|+ -+|.|+.
T Consensus        85 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~  127 (187)
T 1zj6_A           85 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL-LIFANKQ  127 (187)
T ss_dssp             CEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEE-EEEEECT
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeE-EEEEECC
Confidence            466666654 44567777777766654    35555 4889998

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=82.35  E-value=1  Score=37.94  Aligned_cols=29  Identities=21%  Similarity=0.393  Sum_probs=17.6

Q ss_pred             hhhcCCCeEEEEEeCCCCCcHHHHHHHHHH
Q 017873           21 NILEQDSLKWVFVGGKGGVGKTTCSSILSI   50 (365)
Q Consensus        21 ~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~   50 (365)
                      .|......+|+++ |..||||||+...+..
T Consensus        22 ~~~~~~~~ki~v~-G~~~vGKSsli~~l~~   50 (196)
T 2atv_A           22 SMAKSAEVKLAIF-GRAGVGKSALVVRFLT   50 (196)
T ss_dssp             -----CCEEEEEE-CCTTSSHHHHHHHHHH
T ss_pred             ccCCCCceEEEEE-CCCCCCHHHHHHHHHh
Confidence            3433344455554 7899999999877654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=82.30  E-value=0.5  Score=46.55  Aligned_cols=49  Identities=24%  Similarity=0.259  Sum_probs=34.2

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCEEEEeCCCCCChhhHhh
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHNLSDAFQ   75 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~-G~rVLLiD~D~~~~l~~~~~   75 (365)
                      .+.++.++ |..|+||||+.-.++-.+... |++++.+|.|+...+..+++
T Consensus       137 ~Ge~v~Iv-GpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq  186 (460)
T 2npi_A          137 EGPRVVIV-GGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPG  186 (460)
T ss_dssp             SCCCEEEE-ESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSS
T ss_pred             CCCEEEEE-CCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeecc
Confidence            34455554 899999999999998887644 42567788887655544443

>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*

Probab=82.27  E-value=5.2  Score=37.64  Aligned_cols=39  Identities=10%  Similarity=0.029  Sum_probs=33.2

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ..+++|+|++. ||-|=-+-...+|.+|.++|++|.++..
T Consensus        18 ~~m~rIl~~~~-~~~GHv~p~l~La~~L~~~Gh~V~v~~~   56 (415)
T 3rsc_A           18 RHMAHLLIVNV-ASHGLILPTLTVVTELVRRGHRVSYVTA   56 (415)
T ss_dssp             -CCCEEEEECC-SCHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred             ccCCEEEEEeC-CCccccccHHHHHHHHHHCCCEEEEEeC
Confidence            35678888775 7889999999999999999999999984

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=82.23  E-value=0.89  Score=37.99  Aligned_cols=37  Identities=14%  Similarity=0.119  Sum_probs=24.2

Q ss_pred             eEEEEeecCCc-chHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEF-LSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~-~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|..... .+. ....+...+...++|+ -+|+|+.
T Consensus       107 ~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~p~-i~v~nK~  144 (195)
T 1svi_A          107 KAVVQIVDLRHAPSN-DDVQMYEFLKYYGIPV-IVIATKA  144 (195)
T ss_dssp             EEEEEEEETTSCCCH-HHHHHHHHHHHTTCCE-EEEEECG
T ss_pred             CEEEEEEECCCCCCH-HHHHHHHHHHHcCCCE-EEEEECc
Confidence            45666665433 333 3345677788888886 4889998

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=82.07  E-value=1.2  Score=42.45  Aligned_cols=33  Identities=21%  Similarity=0.254  Sum_probs=25.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      +-+++.|..|+|||++|.++|..   .|..++-+++
T Consensus       149 ~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~  181 (389)
T 3vfd_A          149 RGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISA  181 (389)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeH
Confidence            45677899999999999998665   4666666665

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=82.04  E-value=0.94  Score=39.74  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=25.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++.+-|..|+||||++..++..    +.+|.+..-+
T Consensus        21 ~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~   53 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP   53 (230)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence            56777799999999998888765    5567776544

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=82.03  E-value=0.34  Score=43.51  Aligned_cols=26  Identities=31%  Similarity=0.386  Sum_probs=22.1

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      .+.++++.|--|+||||++..|+..+
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            34677888999999999999998776

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.95  E-value=1.1  Score=44.17  Aligned_cols=36  Identities=22%  Similarity=0.347  Sum_probs=26.7

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ..++=+.+.|.+|+|||++|.++|..+   |...+.+++
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~  276 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIG  276 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEh
Confidence            445556677999999999999998765   455555554

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=81.94  E-value=1.2  Score=41.53  Aligned_cols=36  Identities=14%  Similarity=0.100  Sum_probs=26.5

Q ss_pred             HHhhhcC-CCeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873           19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE   54 (365)
Q Consensus        19 l~~~~~~-~~~~i~~~sgKGGvGKTT~aa~lA~~la~   54 (365)
                      |...+.+ +.....++.|..|+||||+|..+|..+-.
T Consensus        14 l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~   50 (334)
T 1a5t_A           14 LVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC   50 (334)
T ss_dssp             HHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence            3444433 33456778899999999999999998853

>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A

Probab=81.75  E-value=0.91  Score=42.35  Aligned_cols=29  Identities=38%  Similarity=0.414  Sum_probs=24.0

Q ss_pred             CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           36 KGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        36 KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      -||+|||-++..|+..|.  ++++.+|+=--
T Consensus        46 vGGTGKTP~vi~L~~~L~--~~~~~ilsRGY   74 (315)
T 4ehx_A           46 VGGSGKTSFVMYLADLLK--DKRVCILSRGY   74 (315)
T ss_dssp             SSCCSHHHHHHHHHHHTT--TSCEEEEECCC
T ss_pred             eCCCChHHHHHHHHHHHh--hcCceEEeecc
Confidence            899999999999999884  56777777543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=81.75  E-value=36  Score=32.24  Aligned_cols=39  Identities=13%  Similarity=-0.001  Sum_probs=26.8

Q ss_pred             eEEEEeecCCcc-hHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFL-SLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~-s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|.....- +..++.+.+..+...+++..-+++|+.
T Consensus       108 D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~  147 (410)
T 1kk1_A          108 DGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKI  147 (410)
T ss_dssp             SEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECG
T ss_pred             CEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECc
Confidence            356666665533 356777777777777876556789999

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=81.73  E-value=0.72  Score=39.86  Aligned_cols=30  Identities=17%  Similarity=0.148  Sum_probs=24.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      .|+.++|--|+||||++..||..|   |..  ++|
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~l---g~~--~~D   36 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHY---NIP--LYS   36 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHT---TCC--EEC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHh---CcC--EEC
Confidence            478889999999999999999876   654  446

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=81.46  E-value=1.3  Score=43.33  Aligned_cols=31  Identities=26%  Similarity=0.412  Sum_probs=25.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      +++.|..|+||||++..+|..+   |...+.+|+
T Consensus        53 iLl~GppGtGKT~lar~lA~~l---~~~~~~v~~   83 (444)
T 1g41_A           53 ILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA   83 (444)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred             EEEEcCCCCCHHHHHHHHHHHc---CCCceeecc
Confidence            5666899999999999998765   667777776

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=81.35  E-value=0.89  Score=39.94  Aligned_cols=32  Identities=28%  Similarity=0.382  Sum_probs=25.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      .++++.|-.|+||||.+..|+..+..   ++.++-
T Consensus         6 ~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~   37 (216)
T 3tmk_A            6 KLILIEGLDRTGKTTQCNILYKKLQP---NCKLLK   37 (216)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcc---cceEEE
Confidence            46677789999999999999998865   455444

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=81.07  E-value=0.87  Score=41.07  Aligned_cols=22  Identities=32%  Similarity=0.354  Sum_probs=19.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHH
Q 017873           31 VFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +++.|..|+||||++..+|..+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCcChHHHHHHHHHHHc
Confidence            6777999999999999998764

>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*

Probab=80.96  E-value=8.9  Score=35.89  Aligned_cols=39  Identities=21%  Similarity=0.226  Sum_probs=32.5

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ...|+|+|++. +|-|--.-...||.+|.++|++|.++..
T Consensus        18 ~~~MrIl~~~~-~~~Ghv~~~~~La~~L~~~GheV~v~~~   56 (398)
T 3oti_A           18 GRHMRVLFVSS-PGIGHLFPLIQLAWGFRTAGHDVLIAVA   56 (398)
T ss_dssp             -CCCEEEEECC-SSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred             hhcCEEEEEcC-CCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence            34578988876 4778777889999999999999999987

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=80.90  E-value=0.89  Score=37.91  Aligned_cols=19  Identities=32%  Similarity=0.440  Sum_probs=16.5

Q ss_pred             EEEEEeCCCCCcHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSI   47 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~   47 (365)
                      .++.+.|..|+||||++..
T Consensus        10 ei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHH
Confidence            5667779999999999986

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=80.88  E-value=1.9  Score=43.16  Aligned_cols=35  Identities=26%  Similarity=0.278  Sum_probs=26.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..++++.|..|+||||++-.+|..+   +....-++++
T Consensus       108 g~~vll~Gp~GtGKTtlar~ia~~l---~~~~~~i~~~  142 (543)
T 3m6a_A          108 GPILCLAGPPGVGKTSLAKSIAKSL---GRKFVRISLG  142 (543)
T ss_dssp             SCEEEEESSSSSSHHHHHHHHHHHH---TCEEEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc---CCCeEEEEec
Confidence            3467788999999999999999987   3445555554

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=80.71  E-value=1.3  Score=39.33  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=30.6

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+++++++++-||.|+     ++|..|++.|.+|.++|-++.
T Consensus        21 m~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~r~~~   57 (251)
T 3orf_A           21 MSKNILVLGGSGALGA-----EVVKFFKSKSWNTISIDFREN   57 (251)
T ss_dssp             -CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred             cCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCcc
Confidence            3567889988999986     678888999999999998764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=80.51  E-value=1.2  Score=37.57  Aligned_cols=30  Identities=27%  Similarity=0.366  Sum_probs=21.1

Q ss_pred             hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHH
Q 017873           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSIL   48 (365)
Q Consensus        18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~l   48 (365)
                      -++.+...+..+|+++ |.+||||||+...+
T Consensus        20 ~~~~~~~~~~~ki~v~-G~~~vGKSsLi~~l   49 (192)
T 2b6h_A           20 LFSRIFGKKQMRILMV-GLDAAGKTTILYKL   49 (192)
T ss_dssp             GGGGTTTTSCEEEEEE-ESTTSSHHHHHHHH
T ss_pred             HHHHhccCCccEEEEE-CCCCCCHHHHHHHH
Confidence            3444555555666665 68899999998876

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=80.43  E-value=0.94  Score=41.11  Aligned_cols=31  Identities=19%  Similarity=0.266  Sum_probs=23.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      +.+.|.+|+||||++-.+|..+   +...+.++.
T Consensus        47 vlL~Gp~GtGKTtLakala~~~---~~~~i~i~g   77 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANES---GLNFISVKG   77 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHT---TCEEEEEET
T ss_pred             EEEECCCCCcHHHHHHHHHHHc---CCCEEEEEc
Confidence            6777999999999999998753   333455543

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.31  E-value=1.4  Score=42.94  Aligned_cols=36  Identities=25%  Similarity=0.219  Sum_probs=26.6

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ..++=+.+.|.+|+|||++|.++|..+   |...+.+++
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~  249 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVG  249 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEES
T ss_pred             CCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEH
Confidence            444556666999999999999998865   455666654

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=80.21  E-value=1.5  Score=39.91  Aligned_cols=34  Identities=12%  Similarity=0.157  Sum_probs=25.9

Q ss_pred             HHhhhcCC-C-eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           19 VRNILEQD-S-LKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        19 l~~~~~~~-~-~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +...+.+. + +.-+++.|.+|+|||+++.++|..+
T Consensus        93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A           93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence            55566654 4 3457788999999999999998854

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=80.18  E-value=1.3  Score=36.74  Aligned_cols=38  Identities=16%  Similarity=0.117  Sum_probs=24.4

Q ss_pred             eEEEEeecC-CcchHHHHHHHHHHHHh----CCCCcCeEEEcCc
Q 017873          225 TTFVCVCIP-EFLSLYETERLVQELTK----FEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p-~~~s~~et~~~~~~L~~----~gi~v~~vVvN~~  263 (365)
                      ..+++|... +..+..++...+..+..    .+.|+ -+|.|+.
T Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~  129 (186)
T 1ksh_A           87 DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL-LIFANKQ  129 (186)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEE-EEEEECT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcE-EEEEeCc
Confidence            456666654 45567777766666544    35555 5889998

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=80.06  E-value=0.8  Score=40.06  Aligned_cols=24  Identities=25%  Similarity=0.254  Sum_probs=14.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHH-HHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILS-ILL   52 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA-~~l   52 (365)
                      .++.+.|..|+||||++..|+ ..+
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC---
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            466778999999999999888 554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d1ihua1	296	c.37.1.10 (A:1-296) Arsenite-translocating ATPase	4e-56
d1ihua2	279	c.37.1.10 (A:308-586) Arsenite-translocating ATPas	3e-47
d1cp2a_	269	c.37.1.10 (A:) Nitrogenase iron protein {Clostridi	2e-08
d2afhe1	289	c.37.1.10 (E:1-289) Nitrogenase iron protein {Azot	5e-08
d1hyqa_	232	c.37.1.10 (A:) Cell division regulator MinD {Archa	1e-06
d1g3qa_	237	c.37.1.10 (A:) Cell division regulator MinD {Archa	3e-06
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	0.004

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score =  183 bits (465), Expect = 4e-56
 Identities = 81/307 (26%), Positives = 116/307 (37%), Gaps = 34/307 (11%)

Query: 25  QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTL 84
           Q+   ++F  GKGGVGKT+ S   +I LAE    VL++STDPA N+   F Q    T   
Sbjct: 5   QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQA 64

Query: 85  VNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANA-IPGIDEAMSFAEM---------- 133
           +     L A+E+DP    +      +D +   L +  +  I+E +S A            
Sbjct: 65  IASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFT 124

Query: 134 ---LKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLF 190
                      +  I+FDTAPTGHT+RLLQ P      +D      +  G M        
Sbjct: 125 GLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGL----- 179

Query: 191 GIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK 250
                          E  ++      +   DP  T  V V   +  +L E  R   EL  
Sbjct: 180 ---------------EKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAA 224

Query: 251 FEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTG 310
             +    ++IN VL   E     L  A    +Q+ L              L L P  + G
Sbjct: 225 IGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLPADLAGLPTDTLFLQPVNMVG 284

Query: 311 IEALKAF 317
           + AL   
Sbjct: 285 VSALSRL 291

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score =  159 bits (403), Expect = 3e-47
 Identities = 70/312 (22%), Positives = 118/312 (37%), Gaps = 36/312 (11%)

Query: 10  QELEIPE-GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
           Q  +IP   ++ + + ++    + + GKGGVGKTT ++ +++ LA++   V + ++DPA 
Sbjct: 1   QRPDIPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA 60

Query: 69  NLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAM 128
           +LS                            +E +    +       E     P  +E  
Sbjct: 61  HLSMTLNGSLNNLQVSRIDPHEETERYRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIA 120

Query: 129 SFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188
            F    ++++      +V DTAPTGHTL LL       + + K M               
Sbjct: 121 VFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKM--------------- 165

Query: 189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248
                             G K          +DP+ T  + V +PE   + E   L  +L
Sbjct: 166 ------------------GEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADL 207

Query: 249 TKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEV 308
            +  I     IIN  L    D  S LLR R + +   ++     +    +  +P+L  E 
Sbjct: 208 ERAGIHPWGWIINNSLS-IADTRSPLLRMRAQQELPQIESVKRQHAS-RVALVPVLASEP 265

Query: 309 TGIEALKAFSQH 320
           TGI+ LK  + H
Sbjct: 266 TGIDKLKQLAGH 277

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Length = 269

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

 Score = 52.3 bits (124), Expect = 2e-08
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 3/129 (2%)

Query: 33  VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLY 92
           + GKGG+GK+T +  L+  L  +  +++++  DP  + +        +   L        
Sbjct: 6   IYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGE 65

Query: 93  AMEVDPSVEEETGSTEGMDSLFSE--LANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTA 150
            +E+D  ++E  G    ++S   E  +  A  GI  +++  E L          + +D  
Sbjct: 66  DVELDSILKEGYGGIRCVESGGPEPGVGCAGRGIITSINMLEQLGAYTDD-LDYVFYDVL 124

Query: 151 PTGHTLRLL 159
                    
Sbjct: 125 GDVVCGGFA 133

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} Length = 289

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

 Score = 51.4 bits (122), Expect = 5e-08
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 5/129 (3%)

Query: 27  SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVN 86
           +++   + GKGG+GK+T +  L   LAE+   V+I+  DP  + +        +   +  
Sbjct: 1   AMRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEM 60

Query: 87  GFSNLYAMEVDPSVEEETG----STEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDY 142
                   +++     + G               +  A  G+  A++F E     +  D 
Sbjct: 61  AAEAGTVEDLELEDVLKAGYGGVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYED-DL 119

Query: 143 SCIVFDTAP 151
             + +D   
Sbjct: 120 DFVFYDVLG 128

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 46.7 bits (109), Expect = 1e-06
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
              GKGG GKTT ++ L + LA++   V I+  D 
Sbjct: 5  TVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 40

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 45.5 bits (106), Expect = 3e-06
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
            V GKGG GKTT ++ LS+ L +    VL +  D 
Sbjct: 6  SIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 27/195 (13%), Positives = 50/195 (25%), Gaps = 22/195 (11%)

Query: 29  KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGF 88
           + VF+ G  GVGKTT     S +L      V    T+          +R       ++G 
Sbjct: 2   RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQ----GGRRIGFDVVTLSGT 57

Query: 89  SNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFD 148
               +         +     G   +     +       A+                 V D
Sbjct: 58  RGPLSRVGLEPPPGKRECRVGQYVV-----DLTSFEQLALPVLRNADCSSGPGQRVCVID 112

Query: 149 TAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGM 208
                           +E      +    +       +        +    AL+  +   
Sbjct: 113 EI------------GKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNR 160

Query: 209 KDV-IERVNKQFKDP 222
           KDV +  V K+ ++ 
Sbjct: 161 KDVKVFNVTKENRNH 175

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	100.0
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	100.0
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	99.88
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	99.86
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	99.85
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	99.85
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	99.69
d2qy9a2	211	GTPase domain of the signal recognition particle r	99.0
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.95
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.9
d1okkd2	207	GTPase domain of the signal recognition particle r	98.88
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.88
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.32
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.14
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.82
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.7
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.65
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.58
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.56
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.56
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.49
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.46
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.43
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.31
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.04
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.0
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.95
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.92
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.9
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	96.86
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.83
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.65
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.61
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.61
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.49
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.34
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.32
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.29
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.21
d1vcoa2	272	CTP synthase PyrG, N-terminal domain {Thermus ther	96.2
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.18
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.12
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.12
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.04
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.01
d1s1ma2	266	CTP synthase PyrG, N-terminal domain {Escherichia	95.93
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.9
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.88
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.84
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.74
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.63
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.58
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.56
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.54
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.51
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.5
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.45
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.43
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.42
d2vo1a1	273	CTP synthase PyrG, N-terminal domain {Human (Homo	95.34
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	95.2
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.13
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.13
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.12
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.0
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.95
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.91
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.79
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	94.7
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	94.3
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	94.26
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.25
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.15
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	94.05
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	93.95
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	93.94
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	93.88
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	93.76
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.75
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	93.69
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	93.68
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.66
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	93.59
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	93.56
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	93.3
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	93.08
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	93.02
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	92.99
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	92.91
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	92.9
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	92.8
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	92.78
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	92.72
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	92.63
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	92.63
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	92.44
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	92.38
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	92.17
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	91.98
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	91.97
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.91
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	91.46
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	91.46
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.45
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.38
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	91.35
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.05
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	91.03
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	90.94
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	90.73
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	90.58
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	90.56
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	90.54
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.47
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	90.45
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	90.36
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	89.81
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	89.26
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	89.22
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	89.18
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	89.03
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	89.01
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	88.59
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	88.57
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	88.07
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	88.03
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	87.98
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	87.77
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	87.68
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	87.63
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	87.61
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	87.48
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	87.38
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	87.34
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	87.01
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	86.91
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	86.83
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.82
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	86.75
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	86.49
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	86.43
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	85.74
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	85.5
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	85.15
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	84.98
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	84.96
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	84.84
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	84.51
d1tf5a3	273	Translocation ATPase SecA, nucleotide-binding doma	84.35
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	83.76
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	83.26
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	82.99
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	82.96
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	81.85
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	80.88
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	80.29

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.8e-43  Score=327.07  Aligned_cols=273  Identities=30%  Similarity=0.413  Sum_probs=209.6

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccc-cc
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET  104 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~~  104 (365)
                      ++.+|+|+||||||||||+|+|+|.+||++|+|||+||+||++|+++.||.+.+..+....+.++++..++++.... ++
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQY   85 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHTTSCCCSSCEECTTSTTEEEEECCHHHHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCCCCHHHHhCCCCcccccccccccccchhccChhhHHHHH
Confidence            45678899999999999999999999999999999999999999999999998888888777889999998887665 11


Q ss_pred             cc--ccC----c-cchhHHhhh--cCCCHHHHHHHHHHHHHHHh----CCCcEEEEcCCCChhHHHhhhchHHHHHHHHH
Q 017873          105 GS--TEG----M-DSLFSELAN--AIPGIDEAMSFAEMLKLVQT----MDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDK  171 (365)
Q Consensus       105 ~~--~~~----~-~~~~~~~~~--~~pg~~~~~~l~~l~~~l~~----~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~  171 (365)
                      ..  ..+    . .........  ..+.......+.++...+..    .+||||||||||++++++++.+|..+.+|+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~iviD~pp~~~~l~~~~l~~~~~~~~~~  165 (296)
T d1ihua1          86 RARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDS  165 (296)
T ss_dssp             HHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCCCHHHHHHHHCGGGGTCCC--
T ss_pred             HhhccchhhhcccccchhhhHHhhhhhhhhhHHHHHHHHHHHHHhhhcccceEEEeccCCCchHHHHHhHHHHHHHHHhh
Confidence            10  000    1 011111111  11112222334444443322    26999999999999999999999999888665


Q ss_pred             HHHHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhC
Q 017873          172 MMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF  251 (365)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~  251 (365)
                      .......+.+.       .             .+..+.+.+..+.+.+.|+..|++++||+|+.+++.+++++++.+++.
T Consensus       166 ~~~~~~~~~~~-------~-------------~~~~~~~~~~~~~~~~~~~~~t~~~lVt~pe~~~~~~~~r~~~~l~~~  225 (296)
T d1ihua1         166 NPEGASCLGPM-------A-------------GLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAI  225 (296)
T ss_dssp             ----CCCCGGG-------G-------------GCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhcccc-------c-------------chhHHHHHHHHHHhhccCcccceeeEecCcchhHHHHHHHHHHHHHhc
Confidence            54333222111       1             122345667778888999999999999999999999999999999999


Q ss_pred             CCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHH
Q 017873          252 EIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFS  318 (365)
Q Consensus       252 gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~  318 (365)
                      |+++.++|+||+.+..+...|.+|+++...|.++++++.+.|.+.++..+|+.+.|+.|+++|+++.
T Consensus       226 gi~~~~vVvN~v~p~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~vp~~~~e~~G~~aL~~l~  292 (296)
T d1ihua1         226 GLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLPADLAGLPTDTLFLQPVNMVGVSALSRLL  292 (296)
T ss_dssp             TCCCEEEEEEEECCGGGGSSCHHHHHHHHHHHHHHHTCCHHHHTSCEEEEECCSSCCCSHHHHHHTT
T ss_pred             CCCceEEEEcCCcCccCCCCCHHHHHHHHHHHHHHHHHHHHccCCceEEecCCCCCCcCHHHHHHHh
Confidence            9999999999995444445788999999999999999999999999999999999999999998873

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-34  Score=269.11  Aligned_cols=253  Identities=28%  Similarity=0.414  Sum_probs=170.2

Q ss_pred             cCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCccccc-
Q 017873           24 EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-  102 (365)
Q Consensus        24 ~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-  102 (365)
                      ..++++|+++||||||||||+|+|||.+||++|+||++||+||+++++.+||.....          ......+..... 
T Consensus        16 ~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~~~l~~~lg~~~~~----------~~~~~~~~~~~~~   85 (279)
T d1ihua2          16 ARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTLNGSLNN----------LQVSRIDPHEETE   85 (279)
T ss_dssp             HTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-----------CC----------EEEEECCHHHHHH
T ss_pred             hcCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCChHHHhCCcccc----------ccccccccchhhH
Confidence            367899999999999999999999999999999999999999999999999876322          111112221111 


Q ss_pred             cc----cc--ccCccch---hHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHH
Q 017873          103 ET----GS--TEGMDSL---FSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMM  173 (365)
Q Consensus       103 ~~----~~--~~~~~~~---~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~  173 (365)
                      ++    ..  ...+...   ........++..+......+...+...+|||+++||||+.+.++++..+......+....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~l~~~~~~~~~~~~~~  165 (279)
T d1ihua2          86 RYRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKM  165 (279)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC-----------
T ss_pred             HHHHhhhhcccccccccccccchhhhcccchHHHHHHHHHHHHHhhcccccccccCCCchhHHHHHHHHHHHHhhHHHHh
Confidence            00    00  0011111   111122334445555556666666666899999999999999998877666554433222


Q ss_pred             HHHHhhhhhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCC
Q 017873          174 SLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEI  253 (365)
Q Consensus       174 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi  253 (365)
                      ......                                 ......+.+...+.+++|+.|+..+..++.++++.+..+++
T Consensus       166 ~~~~~~---------------------------------~~~~~~~~~~~~~~~vlV~~p~~~~~~~~~r~~~~l~~~~~  212 (279)
T d1ihua2         166 GEKGHF---------------------------------TTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGI  212 (279)
T ss_dssp             ----------------------------------------CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTC
T ss_pred             cchhhH---------------------------------HHHhhhccccccccceEeccccHhHHHHHHHHHHHHHhcCC
Confidence            111111                                 11122355666789999999999999999999999999999


Q ss_pred             CcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCCCCHHHHHHHHHhh
Q 017873          254 DTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDDFHITKLPLLPEEVTGIEALKAFSQHF  321 (365)
Q Consensus       254 ~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~~vp~~~~e~~g~~~L~~l~~~l  321 (365)
                      ++.++|+|++. +......++++.+...|..+++.+.+.+. .++..+|+++.+|.|+++|+++|++|
T Consensus       213 ~~~~iV~N~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~v~~vP~~~~e~~g~~~L~~la~~l  278 (279)
T d1ihua2         213 HPWGWIINNSL-SIADTRSPLLRMRAQQELPQIESVKRQHA-SRVALVPVLASEPTGIDKLKQLAGHH  278 (279)
T ss_dssp             CCCEEEEEEES-TTSCCCCHHHHHHHHHHHHHHHHHHTTTC-SSEEEEECCSSCCCSHHHHHHHHCCC
T ss_pred             CccEEEEcCCc-cccccccHHHHHHHHHHHHHHHHHHHhcC-CcEEEecCCCcCCCCHHHHHHHHhhc
Confidence            99999999995 43345678899999999999999998775 48999999999999999999999875

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.88  E-value=6.1e-23  Score=183.72  Aligned_cols=165  Identities=17%  Similarity=0.219  Sum_probs=110.5

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC-CChhhHhhcccCCCceeecCcCCceeeecCcccccccc
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETG  105 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~-~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  105 (365)
                      ++.|+|+|+||||||||+|+|||.+||++|+||++||+|++ ++++.+||.+...  ...   .++...+......+ ..
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~--~~~---~~~~~~~~~~~~~~-~~   74 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLP--VTL---QNVLAGEARIDEAI-YV   74 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCC--CCH---HHHHTTSSCGGGGC-EE
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHhCCCcCc--chh---hhhhcccccccccc-cc
Confidence            35678999999999999999999999999999999999986 6788888865211  000   00000000011111 00


Q ss_pred             cccCccchhHHhhhcCCCHH-----HHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhh
Q 017873          106 STEGMDSLFSELANAIPGID-----EAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFG  180 (365)
Q Consensus       106 ~~~~~~~~~~~~~~~~pg~~-----~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~  180 (365)
                      ...++..+     ...+...     ....+..+++.++. .||+||+||||+.+.....                     
T Consensus        75 ~~~~~~~l-----~~~~~~~~~~~~~~~~l~~~l~~l~~-~~D~viiD~~~~~~~~~~~---------------------  127 (232)
T d1hyqa_          75 GPGGVKVV-----PAGVSLEGLRKANPEKLEDVLTQIME-STDILLLDAPAGLERSAVI---------------------  127 (232)
T ss_dssp             CGGGCEEE-----ECCSCHHHHHHHCHHHHHHHHHHHHH-TCSEEEEECCSSSSHHHHH---------------------
T ss_pred             CCccceeE-----eeecccccccccchhhHHHHHHHHhh-ccceeeecccccccchhHH---------------------
Confidence            11111100     0001111     11356667777777 7999999999977542221                     


Q ss_pred             hhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEE
Q 017873          181 GMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIII  260 (365)
Q Consensus       181 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVv  260 (365)
                          .+                               ..    .+.+++|+.|+..++..+.+.+..+++.+.++.++|+
T Consensus       128 ----~l-------------------------------~~----ad~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~  168 (232)
T d1hyqa_         128 ----AI-------------------------------AA----AQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVV  168 (232)
T ss_dssp             ----HH-------------------------------HH----SSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             ----Hh-------------------------------hh----hheeeeeccccccchhhhhhhhhhhhhcccccccccc
Confidence                00                               01    3589999999999999999999999999999999999


Q ss_pred             cCc
Q 017873          261 NQV  263 (365)
Q Consensus       261 N~~  263 (365)
                      |++
T Consensus       169 N~~  171 (232)
T d1hyqa_         169 NRI  171 (232)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            998

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=99.86  E-value=8.6e-22  Score=180.79  Aligned_cols=47  Identities=23%  Similarity=0.426  Sum_probs=40.8

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHh
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF   74 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~   74 (365)
                      +++|+| +|||||||||+|+|||.+||++|+||++||+||+++.+..+
T Consensus         1 mr~Iai-~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q~~~t~~l   47 (269)
T d1cp2a_           1 MRQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLL   47 (269)
T ss_dssp             CEEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHH
T ss_pred             CCEEEE-ECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCCCCchhhh
Confidence            356667 47999999999999999999999999999999997766554

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.85  E-value=4.9e-22  Score=184.51  Aligned_cols=47  Identities=32%  Similarity=0.489  Sum_probs=41.2

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHh
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF   74 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~   74 (365)
                      +++|++ ||||||||||+|+|||.+||++|+|||+||+|||++.+.++
T Consensus         2 Mr~Iai-sgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~~st~~~   48 (289)
T d2afhe1           2 MRQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLI   48 (289)
T ss_dssp             CEEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHH
T ss_pred             ccEEEE-ECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCCCcchhh
Confidence            345555 88999999999999999999999999999999998776554

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.85  E-value=3.1e-22  Score=179.26  Aligned_cols=166  Identities=19%  Similarity=0.186  Sum_probs=108.7

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC-CCChhhHhhcccCCCceeecCcCCceeeecCcccccccc
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETG  105 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~-~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  105 (365)
                      ++.|+|+|+||||||||+|+|||.+|+++|++|++||+|+ +++++.+++.........     +....+..........
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~~~-----~~l~~~~~~~~~~~~~   76 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLH-----DVLAGEANVEDAIYMT   76 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHH-----HHHTTSSCGGGGCEEC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChhHHhCCCCcccchh-----hhccCCCcHHHhhhcc
Confidence            4578899999999999999999999999999999999995 588998888542210000     0000000000000000


Q ss_pred             cccCccchhHHhhhcCCCHHH-----HHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhh
Q 017873          106 STEGMDSLFSELANAIPGIDE-----AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFG  180 (365)
Q Consensus       106 ~~~~~~~~~~~~~~~~pg~~~-----~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~  180 (365)
                      ...+...     .........     ...+..++..+++ .||||||||||+.+....-                     
T Consensus        77 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~d~IiiD~~~~~~~~~~~---------------------  129 (237)
T d1g3qa_          77 QFDNVYV-----LPGAVDWEHVLKADPRKLPEVIKSLKD-KFDFILIDCPAGLQLDAMS---------------------  129 (237)
T ss_dssp             SSTTEEE-----ECCCCSHHHHHHCCGGGHHHHHHTTGG-GCSEEEEECCSSSSHHHHH---------------------
T ss_pred             ccccccc-----cccccchhhhhhhhhHHHHHHHHHHHh-cCCEEEEcccccccccchh---------------------
Confidence            0000000     000000000     0135556666666 6999999999976532111                     


Q ss_pred             hhHHHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEE
Q 017873          181 GMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIII  260 (365)
Q Consensus       181 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVv  260 (365)
                                                           .+.  ..+.+++|++|+..++..+.+.+..+++.++++.++|+
T Consensus       130 -------------------------------------~l~--~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~  170 (237)
T d1g3qa_         130 -------------------------------------AML--SGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVL  170 (237)
T ss_dssp             -------------------------------------HHT--TCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             -------------------------------------hhh--hhhcccccccccceecchhhHHHHHHhhhhhhhhhhhh
Confidence                                                 011  13689999999999999999999999999999999999


Q ss_pred             cCc
Q 017873          261 NQV  263 (365)
Q Consensus       261 N~~  263 (365)
                      ||+
T Consensus       171 N~~  173 (237)
T d1g3qa_         171 NRY  173 (237)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            998

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.5e-16  Score=139.92  Aligned_cols=206  Identities=14%  Similarity=0.081  Sum_probs=116.5

Q ss_pred             EEEEEeCCC-CCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhcccCCCceeecCcCCceeeecCcccccccccc
Q 017873           29 KWVFVGGKG-GVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST  107 (365)
Q Consensus        29 ~i~~~sgKG-GvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  107 (365)
                      +.+|++|+| ||||||+|+|||.+|+++|+||++||.|++++....++........ .....++   +.+..........
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d~~g~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~   77 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALA-LQRNSSL---QLDYATVNPYTFA   77 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESCBCCTTSCBCHHHHH-HHHTCSS---CCCHHHHCSEEES
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECccccCCCCCCCCcchhHHHH-HHHhhcc---Ccccccccccccc
Confidence            457888998 9999999999999999999999999999887766555443110000 0000000   0000000000000


Q ss_pred             cCcc-chhHHhhhcCCCHHHHHHHHHHHHHHHhCCCcEEEEcCCCChhHHHhhhchHHHHHHHHHHHHHHHhhhhhHHHH
Q 017873          108 EGMD-SLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM  186 (365)
Q Consensus       108 ~~~~-~~~~~~~~~~pg~~~~~~l~~l~~~l~~~~yD~IiiDtpp~~~~l~~l~lp~~l~~~l~~~~~~~~~~~~~~~~~  186 (365)
                      .... .............   ..+......... .||++++|+++...........  .                  .. 
T Consensus        78 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~--~------------------~~-  132 (224)
T d1byia_          78 EPTSPHIISAQEGRPIES---LVMSAGLRALEQ-QADWVLVEGAGGWFTPLSDTFT--F------------------AD-  132 (224)
T ss_dssp             SCSCHHHHHHHHTCCCCH---HHHHHHHHHHHT-TCSEEEEECSSSTTCEEETTEE--H------------------HH-
T ss_pred             cchhhhhhhhhhhhhhhH---HHHHHHHhhhhh-ccceEeecccccccccccccch--h------------------hc-
Confidence            0000 0000001111111   123333444444 6999999999865321111000  0                  00 


Q ss_pred             HhhhCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCC
Q 017873          187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD  266 (365)
Q Consensus       187 ~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~  266 (365)
                                                  +.....    ..+++|+.+.......+....+.++..|..+.|+|+|++. +
T Consensus       133 ----------------------------~~~~~~----~~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~gvv~N~~~-~  179 (224)
T d1byia_         133 ----------------------------WVTQEQ----LPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVT-P  179 (224)
T ss_dssp             ----------------------------HHHHHT----CCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCS-S
T ss_pred             ----------------------------cccccc----ceeeEEEeeccchhHHHHHHHHHHhccCCccEEEEEeCcC-C
Confidence                                        000111    2568899999999999999999999999999999999983 3


Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHhhcCCCcEE-EecCCCCCC
Q 017873          267 DEDVESKLLRARMRMQQKYLDQFYMLYDDFHIT-KLPLLPEEV  308 (365)
Q Consensus       267 ~~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~i~-~vp~~~~e~  308 (365)
                      +. .          .+...++.+.+.++ ++++ .+|+.+..+
T Consensus       180 ~~-~----------~~~~~~~~l~~~~g-i~vlG~IP~~~~~~  210 (224)
T d1byia_         180 PG-K----------RHAEYMTTLTRMIP-APLLGEIPWLAENP  210 (224)
T ss_dssp             CC-T----------THHHHHHHHHHHSS-SCEEEEECCCTTCT
T ss_pred             Cc-h----------HHHHHHHHHHHHhC-CCEEEECCCCCCCc
Confidence            21 1          12344566766664 4554 588876544

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=6.9e-09  Score=90.38  Aligned_cols=43  Identities=26%  Similarity=0.285  Sum_probs=38.6

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ++.+.|+++.|-.||||||+.+-||..+.+.|++|++|.+|..
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~   48 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF   48 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc
Confidence            4456788888999999999999999999999999999999964

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.95  E-value=7.2e-09  Score=90.17  Aligned_cols=41  Identities=24%  Similarity=0.344  Sum_probs=37.6

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .++++++.|..||||||+++-||..++++|+||++|++|..
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~   49 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ   49 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc
Confidence            45777888999999999999999999999999999999965

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.90  E-value=9.8e-09  Score=89.48  Aligned_cols=43  Identities=19%  Similarity=0.200  Sum_probs=34.2

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+.+.|+++.|-.||||||+++-||.++..+|+||.+|.+|..
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~   51 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVY   51 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeecc
Confidence            3456777777999999999999999999999999999999964

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.88  E-value=2.9e-08  Score=86.19  Aligned_cols=39  Identities=31%  Similarity=0.377  Sum_probs=34.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      +++.+.|-.||||||+++-||.++.++|+||.+|.+|..
T Consensus         7 ~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~   45 (207)
T d1okkd2           7 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF   45 (207)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccc
Confidence            455556999999999999999999999999999999964

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=6.7e-09  Score=90.66  Aligned_cols=43  Identities=26%  Similarity=0.353  Sum_probs=38.4

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+.+.++++.|-.||||||+.+-||.++..+|+||.+|.+|..
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~   50 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF   50 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeeccc
Confidence            3456777888999999999999999999999999999999964

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=5.2e-06  Score=76.58  Aligned_cols=44  Identities=27%  Similarity=0.376  Sum_probs=36.0

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChh
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~   71 (365)
                      ..++-++|-+|+||||+.-.|+.++...|+||.++..||....+
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~   97 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVT   97 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeee
Confidence            34556668999999999999999999999999999999985543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.14  E-value=1.6e-05  Score=73.19  Aligned_cols=43  Identities=30%  Similarity=0.387  Sum_probs=38.0

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCCh
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL   70 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l   70 (365)
                      -.++-++|-+|+||||+...|+..+...|++|.++-.||..+.
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~   93 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTR   93 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGS
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHH
Confidence            3456777999999999999999999999999999999987554

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.82  E-value=7.7e-05  Score=64.58  Aligned_cols=52  Identities=12%  Similarity=0.120  Sum_probs=43.8

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.++  ...++++.|.+|+|||+++.++|..+++.|.+|+.++++..
T Consensus        12 ~~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~   65 (242)
T d1tf7a2          12 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES   65 (242)
T ss_dssp             CHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC
T ss_pred             cHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCC
Confidence            34688888753  23477888999999999999999999999999999999854

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=0.00026  Score=62.84  Aligned_cols=54  Identities=19%  Similarity=0.089  Sum_probs=45.4

Q ss_pred             hhhHHhhhcCCC---eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           16 EGSVRNILEQDS---LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        16 ~~~l~~~~~~~~---~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      .+.|+.++..++   -+|+-+.|..|+||||++..++....+.|.+|+.||+...-+
T Consensus        39 ~~~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~   95 (263)
T d1u94a1          39 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD   95 (263)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CHHHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccC
Confidence            446888886333   358889999999999999999999999999999999986543

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=2.8e-05  Score=63.28  Aligned_cols=40  Identities=20%  Similarity=0.069  Sum_probs=36.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      .|+.++|..|+||||++.+|+..|.++|+||.++..|+..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~~   42 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   42 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecccccc
Confidence            4677789999999999999999999999999999999753

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.58  E-value=0.0016  Score=55.58  Aligned_cols=38  Identities=26%  Similarity=0.262  Sum_probs=33.1

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      |+++.|-.|+||||+.-+|..++. .++++.+|..||..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~-~~~~~~ivn~d~~~   39 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGV   39 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSC
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh-hCCeEEEEecCccc
Confidence            678899999999999999987764 67899999999864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.56  E-value=0.00041  Score=58.96  Aligned_cols=51  Identities=18%  Similarity=0.155  Sum_probs=39.8

Q ss_pred             hhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873           17 GSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (365)
Q Consensus        17 ~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~   67 (365)
                      +.|+.++.++  .-.++.+.|..|+|||+++.++|...+ ..+.+|+.++++..
T Consensus        13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~   66 (242)
T d1tf7a1          13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET   66 (242)
T ss_dssp             TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred             HHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCC
Confidence            4678887643  234777789999999999999988766 45678999999854

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.56  E-value=4.6e-05  Score=62.46  Aligned_cols=40  Identities=18%  Similarity=-0.050  Sum_probs=36.0

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      |+|+-+.|..|+||||+..+|+..|..+|++|.+|..|..
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~   40 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH   40 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccC
Confidence            5677788899999999999999999999999999998864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=3.6e-05  Score=63.07  Aligned_cols=38  Identities=34%  Similarity=0.293  Sum_probs=35.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .++++|.+|+||||++..++..+...|.+|.++.+++.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~   40 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEV   40 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence            46778999999999999999999999999999999975

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.46  E-value=5.1e-05  Score=64.03  Aligned_cols=39  Identities=18%  Similarity=0.088  Sum_probs=36.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      +.++++.|.+|+||||+|..||..+...|.++-+++.|.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~   40 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ   40 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccc
Confidence            568899999999999999999999999999999999983

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.43  E-value=0.00026  Score=62.97  Aligned_cols=53  Identities=17%  Similarity=0.053  Sum_probs=44.2

Q ss_pred             hhhHHhhhcCC---CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           16 EGSVRNILEQD---SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        16 ~~~l~~~~~~~---~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      .+.|+.++..+   .-+|+-+.|..|+||||++..++..+.+.|.+|+.||+...-
T Consensus        42 s~~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~   97 (268)
T d1xp8a1          42 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL   97 (268)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             CHHHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccC
Confidence            44688888632   235888889999999999999999999999999999998543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.31  E-value=0.00011  Score=60.54  Aligned_cols=37  Identities=30%  Similarity=0.298  Sum_probs=34.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      |+|+++.|-.|+||||++..||..|...|.++..++.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~   37 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY   37 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            6889999999999999999999999999999998875

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.04  E-value=0.0016  Score=57.76  Aligned_cols=54  Identities=15%  Similarity=0.040  Sum_probs=44.4

Q ss_pred             hhhHHhhhc-CC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Q 017873           16 EGSVRNILE-QD--SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (365)
Q Consensus        16 ~~~l~~~~~-~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~   69 (365)
                      .+.|+.++. ++  .-+|.-+.|..|+||||++..++......|.+|+.||+...-+
T Consensus        45 ~~~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~  101 (269)
T d1mo6a1          45 SIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALD  101 (269)
T ss_dssp             CHHHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCC
T ss_pred             CHHHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCC
Confidence            446888886 32  2358888899999999999999999999999999999986543

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.00  E-value=0.00038  Score=57.55  Aligned_cols=42  Identities=29%  Similarity=0.220  Sum_probs=37.5

Q ss_pred             cCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           24 EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        24 ~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +..++.|+.++|-.|+||||+|..|+..+...|..+..++.|
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~   59 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD   59 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhccccccceecccc
Confidence            345677888999999999999999999999999999999877

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.95  E-value=0.00056  Score=60.33  Aligned_cols=52  Identities=12%  Similarity=0.105  Sum_probs=41.7

Q ss_pred             hhhHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCCC
Q 017873           16 EGSVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (365)
Q Consensus        16 ~~~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~~   67 (365)
                      .+.|+.++.+- .-.++++.|.+|+||||++.++|..++ ..|.+|++++++..
T Consensus        22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~   75 (277)
T d1cr2a_          22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES   75 (277)
T ss_dssp             CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC
T ss_pred             chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeeccc
Confidence            45688777431 124788999999999999999999877 67999999999844

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00044  Score=62.68  Aligned_cols=54  Identities=24%  Similarity=0.281  Sum_probs=41.3

Q ss_pred             hhcchhhHHhhhcC---CCeEEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEeCC
Q 017873           12 LEIPEGSVRNILEQ---DSLKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD   65 (365)
Q Consensus        12 ~~~~~~~l~~~~~~---~~~~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD~D   65 (365)
                      .+.+.......+..   +.+.|+-++|-.|+||||+|..|+..|++.  |.+|.+|.+|
T Consensus        61 ~~~~~~~~~~fl~~~~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D  119 (308)
T d1sq5a_          61 NLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD  119 (308)
T ss_dssp             HHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             HHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeee
Confidence            33344444444443   445688899999999999999999999854  7899999999

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.90  E-value=0.00029  Score=57.54  Aligned_cols=37  Identities=32%  Similarity=0.277  Sum_probs=33.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +|+++.|-.|+||||++..|+..|...|.++.++..+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~   38 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG   38 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecC
Confidence            6889999999999999999999999999999988764

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.86  E-value=0.0011  Score=58.90  Aligned_cols=68  Identities=9%  Similarity=0.033  Sum_probs=50.4

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCccCCCCccchHHHHHHHHHHHHHHHHHHhhcCC-CcEEEecC
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEDVESKLLRARMRMQQKYLDQFYMLYDD-FHITKLPL  303 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~~~~~~~~~~~~~~~~~~~q~~~l~~i~~~~~~-~~i~~vp~  303 (365)
                      ...++|..+..-....|+++++.++++++|.. +++|+. ..+. ..          -...++++.+.+.. ...+++|.
T Consensus        96 D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i-~fINKm-Dr~~-ad----------~~~~l~ei~~~l~~~~vp~~~Pi  162 (276)
T d2bv3a2          96 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKM-DKTG-AD----------LWLVIRTMQERLGARPVVMQLPI  162 (276)
T ss_dssp             CEEEEEEETTTSSCHHHHHHHHHHHTTTCCEE-EEEECT-TSTT-CC----------HHHHHHHHHHTTCCCEEECEEEE
T ss_pred             hheEEeccccCCcchhHHHHHHHHHHcCCCEE-EEEecc-cccc-cc----------cchhHHHHHHHhCCCeEEEEecc
Confidence            47888888888888999999999999999975 889999 3331 11          24467888888853 33446776


Q ss_pred             CC
Q 017873          304 LP  305 (365)
Q Consensus       304 ~~  305 (365)
                      ..
T Consensus       163 g~  164 (276)
T d2bv3a2         163 GR  164 (276)
T ss_dssp             SC
T ss_pred             cC
Confidence            64

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.83  E-value=0.00053  Score=58.49  Aligned_cols=47  Identities=21%  Similarity=0.225  Sum_probs=37.9

Q ss_pred             HhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEeCCC
Q 017873           20 RNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDP   66 (365)
Q Consensus        20 ~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD~D~   66 (365)
                      +....++...+++++|-+|+||||+|..|+..+. ..+..+.++|.|.
T Consensus        16 r~~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~   63 (208)
T d1m7ga_          16 RTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN   63 (208)
T ss_dssp             HHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             HHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchH
Confidence            3334444556888899999999999999999886 4688999999993

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.65  E-value=0.00051  Score=55.55  Aligned_cols=35  Identities=20%  Similarity=0.323  Sum_probs=29.8

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .+|++++|-.|+||||+|..||..+   |.++..+|.|
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l---~~~~~~~~~d   37 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD   37 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc---CCCeEEeecc
Confidence            4688899999999999999998865   6677778876

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00068  Score=55.97  Aligned_cols=37  Identities=30%  Similarity=0.285  Sum_probs=32.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .++|++|-.|+||||+|-.||..+...+..+-.++.|
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d   56 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD   56 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHH
Confidence            4678889999999999999999999888888777766

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.61  E-value=0.00058  Score=54.94  Aligned_cols=35  Identities=31%  Similarity=0.372  Sum_probs=26.7

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++++++.|..|+||||+|..||..+   +. ..+++.|
T Consensus         1 M~klI~i~G~~GsGKTTva~~L~~~~---~~-~~~~~~d   35 (176)
T d2bdta1           1 MKKLYIITGPAGVGKSTTCKRLAAQL---DN-SAYIEGD   35 (176)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHS---SS-EEEEEHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc---CC-CEEEehH
Confidence            46788999999999999999998754   33 3455554

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.49  E-value=0.0015  Score=52.69  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=30.5

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCC-CCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVR-PSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G-~rVLLiD~D   65 (365)
                      .+++++|-.|+||||+|..||..|...+ ..+..+|.|
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~   44 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD   44 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhH
Confidence            5677789999999999999999998655 456677776

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.34  E-value=0.0013  Score=53.10  Aligned_cols=36  Identities=19%  Similarity=0.239  Sum_probs=29.0

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +-++++++|..|+||||+|..||.   +.|.+.+.+|.|
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~---~lg~~~~~~~~d   38 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALAN---LPGVPKVHFHSD   38 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHT---CSSSCEEEECTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH---HhCCCEEEecHH
Confidence            346888999999999999887765   347888888876

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.018  Score=48.79  Aligned_cols=54  Identities=19%  Similarity=0.151  Sum_probs=41.2

Q ss_pred             hhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHH------CCCCEEEEeCCCCCCh
Q 017873           17 GSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPAHNL   70 (365)
Q Consensus        17 ~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~------~G~rVLLiD~D~~~~l   70 (365)
                      +.|+.++.++  .-.++.+.|.+|+|||+++.++|...+.      .+..|+.++.......
T Consensus        24 ~~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (258)
T d1v5wa_          24 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRP   85 (258)
T ss_dssp             HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCH
T ss_pred             HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHH
Confidence            4588888753  2358899999999999999999987653      3356888888866443

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.0024  Score=54.29  Aligned_cols=54  Identities=15%  Similarity=0.098  Sum_probs=41.7

Q ss_pred             hhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHH------HCCCCEEEEeCCCCCCh
Q 017873           17 GSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLA------EVRPSVLIISTDPAHNL   70 (365)
Q Consensus        17 ~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la------~~G~rVLLiD~D~~~~l   70 (365)
                      +.|+.++.++  .-+++.++|-+|+||||++.++|...+      ..|.+++.+|+....+.
T Consensus        21 ~~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   82 (251)
T d1szpa2          21 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRP   82 (251)
T ss_dssp             HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCG
T ss_pred             HHHHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHH
Confidence            3588888763  224888899999999999999987654      34678999999876543

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.21  E-value=0.0021  Score=55.13  Aligned_cols=55  Identities=24%  Similarity=0.248  Sum_probs=43.4

Q ss_pred             hhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHC------CCCEEEEeCCCCCChh
Q 017873           17 GSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHNLS   71 (365)
Q Consensus        17 ~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~------G~rVLLiD~D~~~~l~   71 (365)
                      +.|+.++.++  .-.++.++|.+|+||||++.++|...+.+      |.+++.+++.......
T Consensus        23 ~~LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (254)
T d1pzna2          23 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE   85 (254)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred             HHHHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHH
Confidence            3588888763  22588999999999999999999988743      6789999998665543

>d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.20  E-value=0.014  Score=50.79  Aligned_cols=43  Identities=30%  Similarity=0.312  Sum_probs=36.6

Q ss_pred             eEEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCCh
Q 017873           28 LKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL   70 (365)
Q Consensus        28 ~~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l   70 (365)
                      +.|++++| -.|.||=.+|+++|..|..+|++|-++=+||--|+
T Consensus         3 kyifvtGGV~S~lGKGi~~asig~ll~~~g~~v~~~K~DpYlNv   46 (272)
T d1vcoa2           3 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNV   46 (272)
T ss_dssp             EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCS
T ss_pred             eEEEEeCCcccccccHHHHHHHHHHHHhCCCceeEEeeccceec
Confidence            34556666 79999999999999999999999999999986443

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0024  Score=55.85  Aligned_cols=39  Identities=18%  Similarity=0.218  Sum_probs=32.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHH----------CCCCEEEEeCCCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAE----------VRPSVLIISTDPA   67 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~----------~G~rVLLiD~D~~   67 (365)
                      .+.++.|.+|+||||++.++|.++|.          .+.+|++++++..
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~   78 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP   78 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccch
Confidence            46778899999999999999999884          2348999999854

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.0011  Score=52.48  Aligned_cols=31  Identities=29%  Similarity=0.378  Sum_probs=23.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .+|+.|-.|+||||+|..||..|   |.++  +|.|
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L---~~~~--id~~   34 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL---NMEF--YDSD   34 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT---TCEE--EEHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh---CCCe--Eeec
Confidence            45666999999999999999875   5544  4554

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.12  E-value=0.0038  Score=53.70  Aligned_cols=66  Identities=20%  Similarity=0.162  Sum_probs=46.0

Q ss_pred             hhhhcchhhHHhhhcC--CCeEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCEEEEeCCCCCChhhHhh
Q 017873           10 QELEIPEGSVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAHNLSDAFQ   75 (365)
Q Consensus        10 ~~~~~~~~~l~~~~~~--~~~~i~~~sgKGGvGKTT~aa~lA~~la~-~G~rVLLiD~D~~~~l~~~~~   75 (365)
                      .+++.+..-|...+.+  .....+++.|..|+||||++..+|..+.. .+.++..+.+.........+.
T Consensus        23 ~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~   91 (276)
T d1fnna2          23 QQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIG   91 (276)
T ss_dssp             HHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhhhhhhhhh
Confidence            4455666666655543  23456788899999999999999999874 356777777776655544443

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0025  Score=51.27  Aligned_cols=28  Identities=21%  Similarity=0.267  Sum_probs=24.5

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +...+|+++.|-.|+||||+|..||..+
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3467888889999999999999999876

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.01  E-value=0.0019  Score=54.88  Aligned_cols=53  Identities=17%  Similarity=0.126  Sum_probs=40.0

Q ss_pred             hhHHhhhcCCC--eEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----------------CEEEEeCCCCCC
Q 017873           17 GSVRNILEQDS--LKWVFVGGKGGVGKTTCSSILSILLAEVRP----------------SVLIISTDPAHN   69 (365)
Q Consensus        17 ~~l~~~~~~~~--~~i~~~sgKGGvGKTT~aa~lA~~la~~G~----------------rVLLiD~D~~~~   69 (365)
                      +.|+.++++.-  -.++.+.|-+|+|||+++.++|..++..|+                +++.||++...+
T Consensus        21 ~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~~~   91 (258)
T d2i1qa2          21 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFR   91 (258)
T ss_dssp             HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCC
T ss_pred             HHHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCCceEEeecccchhcCceEEEEEecCCcC
Confidence            46888887532  258888899999999999999999886543                567777765433

>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.033  Score=48.07  Aligned_cols=43  Identities=26%  Similarity=0.343  Sum_probs=36.7

Q ss_pred             eEEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCCh
Q 017873           28 LKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL   70 (365)
Q Consensus        28 ~~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l   70 (365)
                      +.|++++| -.|.||=.+|++++.-|..+|++|-++=+||--|.
T Consensus         4 kyifvtGGV~S~lGKGi~~aSig~llk~~g~~V~~~K~DPYlNv   47 (266)
T d1s1ma2           4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINV   47 (266)
T ss_dssp             EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCS
T ss_pred             eEEEEeCCcccccchHHHHHHHHHHHHhCCceeEEEecccceec
Confidence            44556666 79999999999999999999999999999985443

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.90  E-value=0.0051  Score=51.25  Aligned_cols=36  Identities=25%  Similarity=0.249  Sum_probs=32.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ++++.|--|+||||++..|+..|..+|.+|.++..-
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P   37 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP   37 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            467789999999999999999999999999988754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.88  E-value=0.0028  Score=49.93  Aligned_cols=35  Identities=26%  Similarity=0.287  Sum_probs=25.6

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++++++.|..|+||||+|..|+.    .......++.|
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~----~~~~~~~~~~d   35 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIA----KNPGFYNINRD   35 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH----HSTTEEEECHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH----hCCCCEEechH
Confidence            457888999999999999876643    33346666665

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.84  E-value=0.0025  Score=55.21  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=30.2

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ...++.+++.|.+|+||||+|..+|..+   +...+.|++|
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~---~~~~~~i~~d   66 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDND   66 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHh---hcceEEEecH
Confidence            3455678888999999999998888765   5667888876

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.74  E-value=0.023  Score=47.60  Aligned_cols=39  Identities=10%  Similarity=0.036  Sum_probs=31.5

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|.....--..++++.+..+...|+|..-|++|+.
T Consensus        92 D~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~  130 (204)
T d2c78a3          92 DGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKV  130 (204)
T ss_dssp             SSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred             CEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEec
Confidence            356777776666667999999999999998665779999

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.63  E-value=0.0066  Score=54.02  Aligned_cols=41  Identities=27%  Similarity=0.292  Sum_probs=34.2

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHC---CCCEEEEeCC
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEV---RPSVLIISTD   65 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~---G~rVLLiD~D   65 (365)
                      ++.+.|+-++|-.|+||||+|..+...|.+.   +.+|.+|+.|
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~D   67 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASID   67 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGG
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccC
Confidence            3445688899999999999999999888753   4579999999

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.58  E-value=0.0032  Score=56.10  Aligned_cols=40  Identities=18%  Similarity=0.240  Sum_probs=33.0

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      +-|+-++|-.|+||||++..|+..+.+.|.++++|+.|.-
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf   43 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   43 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence            3477888999999999999999999999999999999954

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0045  Score=52.01  Aligned_cols=38  Identities=26%  Similarity=0.344  Sum_probs=32.1

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHC-----CCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEV-----RPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~-----G~rVLLiD~D   65 (365)
                      +.|+-++|-.|+||||+|..|+..+...     +.+|.+|..|
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D   44 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD   44 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecc
Confidence            4567788999999999999999998753     4578999998

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0066  Score=51.30  Aligned_cols=36  Identities=19%  Similarity=0.191  Sum_probs=32.0

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      +++++.|--|+||||.+..|+.+|..+|++|.+++.
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~   39 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRF   39 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence            456667899999999999999999999999998874

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.51  E-value=0.029  Score=44.92  Aligned_cols=38  Identities=24%  Similarity=0.151  Sum_probs=27.6

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +-++++..+......+...++..++..+.|+. +|+|++
T Consensus        82 d~i~~~~~~~~~~~~~~~~~~~~l~~~~~pvi-iv~NK~  119 (171)
T d1mkya1          82 DLVLFVVDGKRGITKEDESLADFLRKSTVDTI-LVANKA  119 (171)
T ss_dssp             SEEEEEEETTTCCCHHHHHHHHHHHHHTCCEE-EEEESC
T ss_pred             cEEEEeeccccccccccccccccccccccccc-ccchhh
Confidence            34555555555555666778888999999875 788999

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.50  E-value=0.012  Score=52.94  Aligned_cols=39  Identities=23%  Similarity=0.318  Sum_probs=30.7

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +..++++.|..|||||.+|..||..+...+.+.+-+|+-
T Consensus        52 p~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~   90 (315)
T d1qvra3          52 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT   90 (315)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred             CceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecc
Confidence            334678889999999999999999997555666666654

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.45  E-value=0.004  Score=50.13  Aligned_cols=24  Identities=25%  Similarity=0.270  Sum_probs=20.4

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +.++++|-.|+||||+|..||..+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            456667889999999999999875

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.43  E-value=0.0045  Score=49.50  Aligned_cols=30  Identities=30%  Similarity=0.355  Sum_probs=22.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ++++|.+|+||||+|..||..+   |+++  +|.|
T Consensus         7 I~i~G~pGsGKTTia~~La~~l---~~~~--i~~~   36 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKS---GLKY--INVG   36 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH---CCEE--EEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH---CCcE--Eech
Confidence            3466999999999999999765   6654  4543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.42  E-value=0.008  Score=52.92  Aligned_cols=38  Identities=11%  Similarity=0.104  Sum_probs=33.0

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|..+..-....|+++++.+.+.++|. -+++|+.
T Consensus        92 D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~-~i~iNk~  129 (267)
T d2dy1a2          92 DAALVAVSAEAGVQVGTERAWTVAERLGLPR-MVVVTKL  129 (267)
T ss_dssp             SEEEEEEETTTCSCHHHHHHHHHHHHTTCCE-EEEEECG
T ss_pred             CceEEEeeccCCccchhHHHHHhhhhccccc-ccccccc
Confidence            4678888887778899999999999999997 5788999

>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.066  Score=46.31  Aligned_cols=40  Identities=28%  Similarity=0.369  Sum_probs=34.9

Q ss_pred             EEEEEeC-CCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           29 KWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        29 ~i~~~sg-KGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      .|++++| -.|.||=.+|++++..|..+|++|-++=+||--
T Consensus         3 yifVtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYl   43 (273)
T d2vo1a1           3 YILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYI   43 (273)
T ss_dssp             EEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSS
T ss_pred             EEEEeCCcccccchHHHHHHHHHHHHhCCceeEEEecccce
Confidence            3455655 899999999999999999999999999999753

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.20  E-value=0.052  Score=43.56  Aligned_cols=36  Identities=19%  Similarity=0.138  Sum_probs=29.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      .++.| .|=||||.|..+|...+-+|+||+++=+=-.
T Consensus         6 ~vytG-~GKGKTTAAlG~alRA~G~G~rV~ivQFlKg   41 (157)
T d1g5ta_           6 IVFTG-NGKGKTTAAFGTAARAVGHGKNVGVVQFIKG   41 (157)
T ss_dssp             EEEES-SSSCHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             EEEeC-CCCCcHHHHHHHHHHHhcCCCEEEEEEEecC
Confidence            34444 3469999999999999999999999998643

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.13  E-value=0.0058  Score=48.99  Aligned_cols=25  Identities=24%  Similarity=0.489  Sum_probs=19.7

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +++|++ +|..|+||||+|..||..+
T Consensus         5 ~~~I~i-~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           5 GINILI-TGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             SCEEEE-ECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEE-EeCCCCCHHHHHHHHHHHh
Confidence            444544 5999999999999998764

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.13  E-value=0.011  Score=50.18  Aligned_cols=36  Identities=25%  Similarity=0.188  Sum_probs=33.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      -+++.|+.|+|||.++.+++..+.+.|++|+.+++.
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~   73 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD   73 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhccCccceEEechH
Confidence            378899999999999999999999999999999875

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.12  E-value=0.0071  Score=49.89  Aligned_cols=34  Identities=26%  Similarity=0.190  Sum_probs=26.3

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ..+.++++.|.+|+||||+|..||..+   |.  ..|++
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~---g~--~~i~~   37 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDF---GW--VHLSA   37 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH---CC--EEEEH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH---CC--ceEch
Confidence            345688888999999999999999866   44  44554

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.00  E-value=0.0097  Score=52.44  Aligned_cols=42  Identities=14%  Similarity=0.203  Sum_probs=29.8

Q ss_pred             hhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        10 ~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      .+++.+...|..+.+. ...++.+.|-||+||||+|.++....
T Consensus        27 ~~~~~i~~~L~~~~~~-~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          27 YHVDRVIKKLDEMCDL-DSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             HHHHHHHHHHHHHTTS-SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhccCC-CceEEEEECCCCCCHHHHHHHHHHhh
Confidence            4455555556554444 34677888999999999999987653

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.032  Score=49.97  Aligned_cols=36  Identities=28%  Similarity=0.321  Sum_probs=28.4

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +..++++.|..|||||.+|..||..+   +.+.+.+|+-
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~l---~~~~i~~d~s   86 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMS   86 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred             CceEEEEECCCcchhHHHHHHHHhhc---cCCeeEeccc
Confidence            34466777999999999999999986   4567777764

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=94.91  E-value=0.0094  Score=48.97  Aligned_cols=33  Identities=24%  Similarity=0.294  Sum_probs=25.7

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ++++|+++ |.+|+||||+|..||..+   |.  ..|++
T Consensus         2 ~~~riil~-G~pGSGKsT~a~~La~~~---g~--~~i~~   34 (190)
T d1ak2a1           2 KGVRAVLL-GPPGAGKGTQAPKLAKNF---CV--CHLAT   34 (190)
T ss_dssp             CCCEEEEE-CCTTSSHHHHHHHHHHHH---TC--EEEEH
T ss_pred             CccEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEeH
Confidence            46788864 999999999999999876   44  44554

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.0061  Score=50.08  Aligned_cols=41  Identities=15%  Similarity=0.063  Sum_probs=32.1

Q ss_pred             hhhHHhhhcCC--CeEEEEEeCCCCCcHHHHHHHHHHHHHHCC
Q 017873           16 EGSVRNILEQD--SLKWVFVGGKGGVGKTTCSSILSILLAEVR   56 (365)
Q Consensus        16 ~~~l~~~~~~~--~~~i~~~sgKGGvGKTT~aa~lA~~la~~G   56 (365)
                      .+.|+.++.++  .-.++.++|-+|+||||++.++|...+..+
T Consensus         9 ~~~LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~~~~~   51 (242)
T d1n0wa_           9 SKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPI   51 (242)
T ss_dssp             CHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred             CHHHHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHHHHhh
Confidence            34688888753  224888889999999999999999887553

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.70  E-value=0.0092  Score=48.00  Aligned_cols=32  Identities=38%  Similarity=0.436  Sum_probs=25.6

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ++|+++ |-.|+||||++-.||..|   |..  .+|+|
T Consensus         2 p~Ivli-G~~G~GKSTig~~La~~l---~~~--fiD~D   33 (165)
T d2iyva1           2 PKAVLV-GLPGSGKSTIGRRLAKAL---GVG--LLDTD   33 (165)
T ss_dssp             CSEEEE-CSTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             CcEEEE-CCCCCCHHHHHHHHHHHh---CCC--eEeec
Confidence            456666 999999999999999877   554  46877

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.30  E-value=0.013  Score=47.01  Aligned_cols=30  Identities=27%  Similarity=0.327  Sum_probs=23.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++.|-+|+||||++..||..|   |.  -.+|+|
T Consensus         3 I~liG~~GsGKsTi~k~La~~l---~~--~~~d~d   32 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL---DL--VFLDSD   32 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---CC--CEEecC
Confidence            3444899999999999999988   44  466876

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=94.26  E-value=0.012  Score=47.60  Aligned_cols=30  Identities=33%  Similarity=0.460  Sum_probs=24.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +|+.|-.|+||||++..||..|   |.+  .+|+|
T Consensus         5 Iil~G~~GsGKSTia~~LA~~L---g~~--~id~D   34 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARAL---GYE--FVDTD   34 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH---TCE--EEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---CCC--EEehh
Confidence            4455999999999999999876   553  66887

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=94.25  E-value=0.013  Score=48.42  Aligned_cols=35  Identities=26%  Similarity=0.320  Sum_probs=26.7

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .+.++|+++ |.+|+||||+|..||..+   |  ...||++
T Consensus         4 ~r~mrIili-G~PGSGKtT~a~~La~~~---g--~~~is~g   38 (189)
T d2ak3a1           4 ARLLRAAIM-GAPGSGKGTVSSRITKHF---E--LKHLSSG   38 (189)
T ss_dssp             SCCCEEEEE-CCTTSSHHHHHHHHHHHB---C--CEEEEHH
T ss_pred             CcceeEEEE-CCCCCCHHHHHHHHHHHH---C--CeEEcHH
Confidence            456788876 999999999999998754   4  3456653

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.15  E-value=0.024  Score=47.28  Aligned_cols=38  Identities=21%  Similarity=0.489  Sum_probs=32.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      ++++.|--|+||||.+..|+..|...|.++.++..-|.
T Consensus         4 fIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~   41 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG   41 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            45567899999999999999999999998777776664

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.05  E-value=0.019  Score=46.79  Aligned_cols=33  Identities=27%  Similarity=0.394  Sum_probs=25.4

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +++|+|+ |..|+||||+|..||..+   |  ...|+++
T Consensus         2 ~mrIvl~-G~pGSGKtT~a~~La~~~---g--~~~i~~~   34 (180)
T d1akya1           2 SIRMVLI-GPPGAGKGTQAPNLQERF---H--AAHLATG   34 (180)
T ss_dssp             CCEEEEE-CCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred             ceEEEEE-CCCCCCHHHHHHHHHHHh---C--CceEecc
Confidence            4677766 999999999999999875   3  4566654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.95  E-value=0.045  Score=46.00  Aligned_cols=54  Identities=19%  Similarity=0.274  Sum_probs=37.6

Q ss_pred             hhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHH---CCCCEEEEeCCCCCC
Q 017873           16 EGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAE---VRPSVLIISTDPAHN   69 (365)
Q Consensus        16 ~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~---~G~rVLLiD~D~~~~   69 (365)
                      ...|+.++.+....-++++|..|+||||++-.+|..+..   ......-++.....+
T Consensus        21 ~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~   77 (237)
T d1sxjd2          21 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG   77 (237)
T ss_dssp             HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCC
T ss_pred             HHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheecccccc
Confidence            445666766554444678899999999999999998753   345566666554443

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.94  E-value=0.014  Score=47.58  Aligned_cols=25  Identities=24%  Similarity=0.175  Sum_probs=20.8

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHH
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSI   50 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~   50 (365)
                      ..+.++++.|-+|+||||+|..++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567889999999999999987743

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.88  E-value=0.016  Score=48.98  Aligned_cols=36  Identities=28%  Similarity=0.421  Sum_probs=27.9

Q ss_pred             hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      .|+..+.+.....++++|..|+||||++-.+|..+.
T Consensus        35 ~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          35 RLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             HHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            355555554445577899999999999999999885

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.76  E-value=0.022  Score=46.23  Aligned_cols=23  Identities=30%  Similarity=0.313  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +|+ +.|.+|+||||+|..||..+
T Consensus         2 ~I~-i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVL-LLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEE-EECCTTSSHHHHHHHHHHHH
T ss_pred             EEE-EECCCCCCHHHHHHHHHHHH
Confidence            444 44999999999999999887

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.75  E-value=0.12  Score=47.63  Aligned_cols=47  Identities=23%  Similarity=0.360  Sum_probs=35.6

Q ss_pred             hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      .++.++.. ..-+++++|.-|+||||+.+++-..+...+++++-|. ||
T Consensus       149 ~l~~l~~~-~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE-dP  195 (401)
T d1p9ra_         149 NFRRLIKR-PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE-DP  195 (401)
T ss_dssp             HHHHHHTS-SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE-SS
T ss_pred             HHHHHHhh-hhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEec-cC
Confidence            35555544 4568899999999999999999888766667777666 54

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.024  Score=46.42  Aligned_cols=24  Identities=33%  Similarity=0.278  Sum_probs=20.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      .++++.|.+|+||||.|..||..+
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            456777889999999999999876

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.68  E-value=0.02  Score=48.84  Aligned_cols=39  Identities=18%  Similarity=0.289  Sum_probs=29.9

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~   68 (365)
                      ....+++.|..|+||||++.++|..   .|..+..+++..-.
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~---~~~~~~~~~~~~~~   89 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQE---LGYDILEQNASDVR   89 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH---TTCEEEEECTTSCC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH---HHhhhhccccccch
Confidence            3356788899999999999999875   46777777775433

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.66  E-value=0.034  Score=42.59  Aligned_cols=37  Identities=14%  Similarity=0.056  Sum_probs=32.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHC--CCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~--G~rVLLiD~D   65 (365)
                      ..+|++|-.|+||||+|.+|-..|-+.  |++|-++|.|
T Consensus         7 f~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~   45 (122)
T d1g8fa3           7 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN   45 (122)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence            467888999999999999999999874  5899999988

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.59  E-value=0.022  Score=47.58  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=20.8

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHH
Q 017873           30 WVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      ++.+.|.+|+||||+|..||..+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            45688999999999999999987

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.56  E-value=0.021  Score=48.06  Aligned_cols=39  Identities=23%  Similarity=0.371  Sum_probs=28.5

Q ss_pred             hhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHC
Q 017873           17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV   55 (365)
Q Consensus        17 ~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~   55 (365)
                      ..|...+.+....-++++|..|+||||+|..+|..+...
T Consensus        25 ~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~   63 (224)
T d1sxjb2          25 DRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR   63 (224)
T ss_dssp             HHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhcc
Confidence            345556555443335678999999999999999988743

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.30  E-value=0.027  Score=48.35  Aligned_cols=25  Identities=28%  Similarity=0.235  Sum_probs=22.2

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAE   54 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~   54 (365)
                      ++++.|.+|+||||++..++..+..
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~~   72 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVSE   72 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHh
Confidence            5678899999999999999999864

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.08  E-value=0.031  Score=45.90  Aligned_cols=33  Identities=27%  Similarity=0.247  Sum_probs=25.2

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ...++++.|.+|+||||+|..||..+   |.  ..|++
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~---g~--~~is~   39 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY---SF--VHLSA   39 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS---SC--EEEEH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh---CC--eEEeh
Confidence            34567777999999999999998865   33  55664

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=93.02  E-value=0.028  Score=47.57  Aligned_cols=31  Identities=32%  Similarity=0.531  Sum_probs=23.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ++++|.+|+||||+|..+|..+   |.....++.
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~---~~~~~~~~~   68 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASEL---QTNIHVTSG   68 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHH---TCCEEEEET
T ss_pred             EEEECCCCCcHHHHHHHHHhcc---CCCcccccC
Confidence            5678999999999999888764   555665553

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.99  E-value=0.06  Score=44.74  Aligned_cols=33  Identities=24%  Similarity=0.293  Sum_probs=24.9

Q ss_pred             hhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873           22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAE   54 (365)
Q Consensus        22 ~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~   54 (365)
                      .+.++.+.=++.-|.+|||||+++-.||..+..
T Consensus        37 iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~   69 (195)
T d1jbka_          37 VLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             HHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHhccCCCCeEEEecCCcccHHHHHHHHHHHHh
Confidence            343433444456689999999999999999985

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=92.91  E-value=0.034  Score=46.15  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=22.0

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      |+.++|.+|+||||.|..||..+.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            778899999999999999999873

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.90  E-value=0.024  Score=46.36  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=20.4

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +++| ++.|..|+||||+|..||..+
T Consensus         3 Pm~I-~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKV-MISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCE-EEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEE-EEECCCCCCHHHHHHHHHHHH
Confidence            4554 466899999999999998876

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.80  E-value=0.032  Score=46.89  Aligned_cols=38  Identities=24%  Similarity=0.349  Sum_probs=27.1

Q ss_pred             hhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873           17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAE   54 (365)
Q Consensus        17 ~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~   54 (365)
                      ..|+..+.++...-++++|..|+||||++..+|..+-.
T Consensus        24 ~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~   61 (227)
T d1sxjc2          24 TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG   61 (227)
T ss_dssp             HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhc
Confidence            34555555443333567899999999999999998753

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.78  E-value=0.086  Score=45.26  Aligned_cols=35  Identities=20%  Similarity=0.168  Sum_probs=25.8

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      .+.+-+.+.|..|+|||++|.++|..+   |..++-++
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~   72 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKIC   72 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhhcc---cccccccc
Confidence            345556677999999999999998754   55555544

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.72  E-value=0.035  Score=44.64  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=19.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHH
Q 017873           31 VFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +++.|.+|+||||+|..||..+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            4567999999999999998876

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=92.63  E-value=0.04  Score=44.63  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=19.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHH
Q 017873           31 VFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      +++.|.+|+||||+|..||..+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            3456999999999999999887

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=92.63  E-value=0.047  Score=45.53  Aligned_cols=32  Identities=28%  Similarity=0.340  Sum_probs=25.3

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +.|+.++|.-|+||||+|--    |...|.  .++|+|
T Consensus         3 k~iIgitG~igSGKStv~~~----l~~~G~--~vidaD   34 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANA----FADLGI--NVIDAD   34 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHH----HHHTTC--EEEEHH
T ss_pred             CEEEEEECCCcCCHHHHHHH----HHHCCC--cEEEch
Confidence            44788889999999998764    567887  567888

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=92.44  E-value=0.038  Score=46.79  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=25.2

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .-++++|.+|+||||+|-.+|..+   +.....++.-
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~---~~~~~~~~~~   69 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGP   69 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHH---TCCEEEEETT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh---CCCeEeccCC
Confidence            345678999999999999888754   5555666543

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=92.38  E-value=0.089  Score=49.86  Aligned_cols=51  Identities=25%  Similarity=0.229  Sum_probs=40.8

Q ss_pred             CCeEEEEEe---CCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHhhccc
Q 017873           26 DSLKWVFVG---GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRF   78 (365)
Q Consensus        26 ~~~~i~~~s---gKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~~~~~   78 (365)
                      .++.|++++   -+-|+||||++..|+.+|++.|+++.+.=  .+||+.-+||.+-
T Consensus        50 ~gklilVTaitPTp~GEGKtTttiGL~~aL~~lgk~~~~~l--RePSlGP~fGiKG  103 (549)
T d1eg7a_          50 DGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCL--REPSLGPSFGIKG  103 (549)
T ss_dssp             CCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEEE--CCCCSTHHHHTTC
T ss_pred             CceEEEEEeCCCCCCCCCcceeHHhHHHHHHHhCCceEEEE--ecCCCCCcccccc
Confidence            355555554   37899999999999999999999987643  5688888898873

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.17  E-value=0.032  Score=45.78  Aligned_cols=33  Identities=30%  Similarity=0.262  Sum_probs=24.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      .+++++.|.+|+||||+|..||..+   |  ...|+++
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~---g--~~~is~g   40 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKY---G--YTHLSTG   40 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHT---C--CEEEEHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh---C--CeeEecc
Confidence            3567777889999999999988753   4  3556664

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=91.98  E-value=0.053  Score=45.02  Aligned_cols=32  Identities=28%  Similarity=0.370  Sum_probs=24.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..|+-++|.-|+||||+|-    .|.+.|..|  +|+|
T Consensus         2 ~~iIgITG~igSGKStv~~----~l~~~G~~v--idaD   33 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIAN----LFTDLGVPL--VDAD   33 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHH----HHHTTTCCE--EEHH
T ss_pred             cEEEEEECCCCCCHHHHHH----HHHHCCCeE--EEch
Confidence            3567788999999999865    446678755  6888

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=91.97  E-value=0.08  Score=45.56  Aligned_cols=35  Identities=29%  Similarity=0.245  Sum_probs=28.1

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      .++-+++.|..|+|||+++-++|..   .|.+++.|++
T Consensus        41 ~~~giLl~GppGtGKT~la~aia~~---~~~~~~~i~~   75 (247)
T d1ixza_          41 IPKGVLLVGPPGVGKTHLARAVAGE---ARVPFITASG   75 (247)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHH---TTCCEEEEEH
T ss_pred             CCceEEEecCCCCChhHHHHHHHHH---cCCCEEEEEh
Confidence            3455678899999999999999974   4777887765

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=91.91  E-value=0.054  Score=43.12  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=27.1

Q ss_pred             chhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHH
Q 017873           15 PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILS   49 (365)
Q Consensus        15 ~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA   49 (365)
                      |...+-.+++++.++|+++ |.+||||||+...+.
T Consensus         3 ~~~~~~~~~~~k~~kI~vv-G~~~~GKSsLi~rl~   36 (177)
T d1zj6a1           3 LFTRIWRLFNHQEHKVIIV-GLDNAGKTTILYQFS   36 (177)
T ss_dssp             HHHHHHHHHTTSCEEEEEE-ESTTSSHHHHHHHHH
T ss_pred             hHHHHHHHhCCCeEEEEEE-CCCCCCHHHHHHHHh
Confidence            4556677888888888877 799999999997653

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.46  E-value=0.43  Score=40.63  Aligned_cols=39  Identities=15%  Similarity=0.011  Sum_probs=28.9

Q ss_pred             eEEEEeecCCcchH-------HHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSL-------YETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~-------~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      ..+++|..+..-..       ..|.+.+..+..+|++..-+++|+.
T Consensus       127 D~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKm  172 (245)
T d1r5ba3         127 DIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKM  172 (245)
T ss_dssp             SEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECT
T ss_pred             cceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcC
Confidence            35666666544332       2788899999999999777899999

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=91.46  E-value=0.1  Score=45.10  Aligned_cols=36  Identities=25%  Similarity=0.219  Sum_probs=28.1

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      ..+-+++.|.+|+|||+++.++|..+   |..++-+++.
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~---~~~~~~i~~~   79 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGS   79 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSC
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHc---CCCEEEEEhH
Confidence            34556788999999999999999766   6667766653

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.45  E-value=0.1  Score=47.54  Aligned_cols=37  Identities=24%  Similarity=0.294  Sum_probs=28.3

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHH----CCCCEEEEeC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAE----VRPSVLIIST   64 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~----~G~rVLLiD~   64 (365)
                      .++.+++|.+|+||||+.+.+...+.+    .|.+|++.-.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~Ap  203 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP  203 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBS
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecC
Confidence            468899999999999998877665543    4667777763

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=91.38  E-value=3  Score=33.75  Aligned_cols=39  Identities=8%  Similarity=0.068  Sum_probs=32.0

Q ss_pred             eEEEEeecCCcchHHHHHHHHHHHHhCCCCcCeEEEcCc
Q 017873          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (365)
Q Consensus       225 t~~~lVt~p~~~s~~et~~~~~~L~~~gi~v~~vVvN~~  263 (365)
                      +.+++|.....-...+|++.+..+..+|++..=|++|+.
T Consensus        91 D~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~  129 (196)
T d1d2ea3          91 DGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKA  129 (196)
T ss_dssp             SEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred             CeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecc
Confidence            467777777766678899999999999997666778999

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.35  E-value=0.064  Score=42.73  Aligned_cols=25  Identities=32%  Similarity=0.444  Sum_probs=21.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEV   55 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~   55 (365)
                      +++.|..|+||||+...++-.+...
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCC
Confidence            4566899999999999999988754

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.05  E-value=0.087  Score=48.53  Aligned_cols=42  Identities=19%  Similarity=0.274  Sum_probs=33.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCChhhHh
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF   74 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l~~~~   74 (365)
                      +++-|+.|+|||++..++...+...|..++++|.  .+.+...+
T Consensus        53 ~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~--kge~~~~~   94 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP--NGDMLSKF   94 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE--TTHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC--ChhHHHHh
Confidence            4666899999999998898888899999999864  45444433

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.03  E-value=0.048  Score=46.26  Aligned_cols=42  Identities=19%  Similarity=0.211  Sum_probs=28.4

Q ss_pred             hhhHHhhhcCC-CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCC
Q 017873           16 EGSVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLAEVRP   57 (365)
Q Consensus        16 ~~~l~~~~~~~-~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~   57 (365)
                      ...|+.++.++ ...-++++|.+|+||||++.++|..+-..+.
T Consensus        20 ~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~   62 (252)
T d1sxje2          20 TNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGV   62 (252)
T ss_dssp             HHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTC
T ss_pred             HHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhhcCccc
Confidence            33455555432 2223578899999999999999998754333

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.94  E-value=0.13  Score=44.75  Aligned_cols=30  Identities=23%  Similarity=0.305  Sum_probs=23.6

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAE   54 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~lA~~la~   54 (365)
                      ++.+.=++.-|.+|||||+++..+|..+..
T Consensus        36 r~~k~n~lLVG~~GvGKTalv~~la~ri~~   65 (268)
T d1r6bx2          36 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQ   65 (268)
T ss_dssp             SSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cCccCCcEEECCCCCcHHHHHHHHHHHHHh
Confidence            333444456699999999999999999886

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.73  E-value=0.074  Score=43.28  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=19.9

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHH
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSI   50 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~   50 (365)
                      ++++++++|+.|+||||+...|..
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            457888899999999999876554

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.58  E-value=0.069  Score=42.94  Aligned_cols=24  Identities=17%  Similarity=0.189  Sum_probs=19.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      |+|+| .|.+|+||||+|..||..+
T Consensus         1 m~I~i-~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           1 MRIIL-LGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             CEEEE-EESTTSSHHHHHHHHHHHH
T ss_pred             CEEEE-ECCCCCCHHHHHHHHHHHh
Confidence            45555 5889999999999999765

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.56  E-value=0.18  Score=42.45  Aligned_cols=43  Identities=12%  Similarity=0.059  Sum_probs=30.2

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      |..+.... .+++++.|.+|+||||++..++..   .+.....+++.
T Consensus        21 l~~l~~~~-~~~i~i~G~~G~GKTsLl~~~~~~---~~~~~~~i~~~   63 (283)
T d2fnaa2          21 IEKLKGLR-APITLVLGLRRTGKSSIIKIGINE---LNLPYIYLDLR   63 (283)
T ss_dssp             HHHHHHTC-SSEEEEEESTTSSHHHHHHHHHHH---HTCCEEEEEGG
T ss_pred             HHHHHhcc-CCEEEEEcCCCCcHHHHHHHHHHH---CCCCeEEEEec
Confidence            44444433 346677799999999999877654   46778888875

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.54  E-value=0.071  Score=43.15  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      ++++++|..|+||||++..|...+
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            467889999999999987776544

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.47  E-value=0.12  Score=39.40  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=27.2

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ..+..++.+.-|+|||+++..   .+...|++|+++--
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~---~~~~~~~~vli~~P   41 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPA---AYAAQGYKVLVLNP   41 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHH---HHHTTTCCEEEEES
T ss_pred             CCCEEEEEeCCCCCHHHHHHH---HHHHcCCcEEEEcC
Confidence            567888899999999987643   34578888887763

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=90.45  E-value=0.081  Score=44.67  Aligned_cols=33  Identities=18%  Similarity=0.335  Sum_probs=24.9

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe-CC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS-TD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD-~D   65 (365)
                      |+|+.++|+-|+||||+|..|+.   +.|  ..++| +|
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e---~~g--~~~i~~aD   34 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMS---NYS--AVKYQLAG   34 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH---HSC--EEECCTTH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH---hCC--CeEEcccH
Confidence            57888889999999999887754   245  46777 45

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=90.36  E-value=0.21  Score=43.67  Aligned_cols=46  Identities=15%  Similarity=0.151  Sum_probs=30.9

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCC----CCEEEEeCC
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVR----PSVLIISTD   65 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G----~rVLLiD~D   65 (365)
                      -+..++..... ++++|-.|+||||+.++-+..+...+    .+++++.+.
T Consensus        16 Q~~~v~~~~g~-~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t   65 (318)
T d1pjra1          16 QQEAVRTTEGP-LLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT   65 (318)
T ss_dssp             HHHHHHCCSSC-EEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESS
T ss_pred             HHHHHhCCCCC-EEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEecc
Confidence            33444433323 44557789999999998766665544    489999887

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.81  E-value=0.11  Score=43.96  Aligned_cols=42  Identities=26%  Similarity=0.367  Sum_probs=32.5

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      +..++.++  . +++.+..|.|||+++...+..++..|.||++|-
T Consensus        52 i~~~l~g~--~-~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~   93 (237)
T d1gkub1          52 AKRILRKE--S-FAATAPTGVGKTSFGLAMSLFLALKGKRCYVIF   93 (237)
T ss_dssp             HHHHHTTC--C-EECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEE
T ss_pred             HHHHHCCC--C-EEEEecCCChHHHHHHHHHHHHHHhcCeEEEEe
Confidence            45555443  2 345579999999999888888889999999987

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=89.26  E-value=0.16  Score=44.03  Aligned_cols=34  Identities=18%  Similarity=0.106  Sum_probs=26.2

Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHC-C---CCEEEEeCC
Q 017873           32 FVGGKGGVGKTTCSSILSILLAEV-R---PSVLIISTD   65 (365)
Q Consensus        32 ~~sgKGGvGKTT~aa~lA~~la~~-G---~rVLLiD~D   65 (365)
                      .+.|-+|+||||+.++.+..+.+. |   .+||++...
T Consensus        18 lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~t   55 (306)
T d1uaaa1          18 LVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFT   55 (306)
T ss_dssp             EECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESS
T ss_pred             EEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCc
Confidence            455889999999988877666543 3   489999986

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=89.22  E-value=0.09  Score=41.85  Aligned_cols=31  Identities=19%  Similarity=0.476  Sum_probs=24.5

Q ss_pred             hhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHH
Q 017873           17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSIL   48 (365)
Q Consensus        17 ~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~l   48 (365)
                      ++++++......+|+++ |.++|||||+--+|
T Consensus         6 ~~~~~~p~~~~~~I~lv-G~~NvGKSSL~n~L   36 (188)
T d1puia_           6 PDIRHLPSDTGIEVAFA-GRSNAGKSSALNTL   36 (188)
T ss_dssp             SSGGGSSCSCSEEEEEE-ECTTSSHHHHHTTT
T ss_pred             CChhHCCCccCCEEEEE-CCCCCCHHHHHHHH
Confidence            56788877777777776 79999999987655

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.18  E-value=0.059  Score=43.95  Aligned_cols=29  Identities=28%  Similarity=0.218  Sum_probs=22.4

Q ss_pred             cCCCeEEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           24 EQDSLKWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        24 ~~~~~~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      .++.+.++++.|--|+||||++-.|+..+
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            34445677888999999999988877544

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.03  E-value=0.078  Score=44.68  Aligned_cols=29  Identities=24%  Similarity=0.296  Sum_probs=24.4

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEV   55 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~   55 (365)
                      |++++++-|-=|+||||++..|+..|...
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~l~~~   29 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEW   29 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            46788888999999999999999877543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=89.01  E-value=0.18  Score=40.83  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=23.6

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +.|+-++|..|+||||+|-.    |.+.|..|  +++|
T Consensus         3 p~IIgitG~~gSGKstva~~----l~~~g~~~--~~~D   34 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAAL----LRSWGYPV--LDLD   34 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHH----HHHTTCCE--EEHH
T ss_pred             CEEEEEECCCCCCHHHHHHH----HHHCCCeE--EEcc
Confidence            45666778999999998764    45789876  4665

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.59  E-value=0.21  Score=40.91  Aligned_cols=43  Identities=14%  Similarity=0.169  Sum_probs=28.8

Q ss_pred             hHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        18 ~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      .+..+..++  . +++....|+|||+++..........+.+|+++-
T Consensus        33 ai~~l~~~~--~-~il~apTGsGKT~~a~l~i~~~~~~~~~vl~l~   75 (202)
T d2p6ra3          33 AVEKVFSGK--N-LLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVV   75 (202)
T ss_dssp             HHHHHTTCS--C-EEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHcCC--C-EEEEcCCCCchhHHHHHHHHHHhhccCcceeec
Confidence            455555433  3 356788899999987655555556677888773

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.57  E-value=0.12  Score=42.28  Aligned_cols=23  Identities=30%  Similarity=0.330  Sum_probs=19.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHH
Q 017873           31 VFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      ++++|..|+||||++-.|+..+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            67899999999999988877663

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=88.07  E-value=0.19  Score=46.12  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=25.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHC-------CCCEEEEeCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEV-------RPSVLIISTD   65 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~-------G~rVLLiD~D   65 (365)
                      ++++ |.+|||||+++-.||..+...       |+++.-+|..
T Consensus        46 ~llv-G~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~   87 (387)
T d1qvra2          46 PVLI-GEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG   87 (387)
T ss_dssp             CEEE-ECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-
T ss_pred             CeEE-CCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHh
Confidence            3444 888999999999999988752       4555555554

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=88.03  E-value=0.2  Score=37.59  Aligned_cols=42  Identities=19%  Similarity=0.220  Sum_probs=27.9

Q ss_pred             hhcCCCeEEEEEeCCCCCcHHHHHH-HHHHHHHHCCCCEEEEeCC
Q 017873           22 ILEQDSLKWVFVGGKGGVGKTTCSS-ILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        22 ~~~~~~~~i~~~sgKGGvGKTT~aa-~lA~~la~~G~rVLLiD~D   65 (365)
                      |++++ +. .+.+.-.|.|||.++. .+...+.+.+.+++++---
T Consensus         3 ~l~~~-~~-~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~p~   45 (140)
T d1yksa1           3 MLKKG-MT-TVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPT   45 (140)
T ss_dssp             TTSTT-CE-EEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred             HHHcC-Cc-EEEEcCCCCChhHHHHHHHHHHhhhcCceeeeeecc
Confidence            45443 33 3555669999998885 4445566778888888743

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.98  E-value=0.46  Score=39.03  Aligned_cols=38  Identities=13%  Similarity=0.148  Sum_probs=30.8

Q ss_pred             hhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873           17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAE   54 (365)
Q Consensus        17 ~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~   54 (365)
                      +.|.+++.++...-+++.|..|+||||+|..+|..+..
T Consensus         4 ~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~   41 (198)
T d2gnoa2           4 ETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEK   41 (198)
T ss_dssp             HHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence            45777888766666778899999999999999987753

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=87.77  E-value=0.42  Score=34.01  Aligned_cols=39  Identities=15%  Similarity=0.095  Sum_probs=28.4

Q ss_pred             CCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCCh
Q 017873           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL   70 (365)
Q Consensus        26 ~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~l   70 (365)
                      ++++|+++    |-|||-.++  |.+|+++|.+|.+.|..+....
T Consensus         4 ~~K~v~Vi----GlG~sG~s~--a~~L~~~g~~v~~~D~~~~~~~   42 (93)
T d2jfga1           4 QGKNVVII----GLGLTGLSC--VDFFLARGVTPRVMDTRMTPPG   42 (93)
T ss_dssp             TTCCEEEE----CCSHHHHHH--HHHHHHTTCCCEEEESSSSCTT
T ss_pred             CCCEEEEE----eECHHHHHH--HHHHHHCCCEEEEeeCCcCchh
Confidence            35667666    556766654  7889999999999998765433

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.68  E-value=0.21  Score=41.43  Aligned_cols=26  Identities=19%  Similarity=0.185  Sum_probs=21.8

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      ..-+++.|..|+||||+|..+|..+-
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            34466789999999999999999875

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.63  E-value=0.23  Score=42.91  Aligned_cols=35  Identities=23%  Similarity=0.226  Sum_probs=27.4

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      ..+-++..|..|+|||+++-++|..+   |..+..+++
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~---~~~~~~~~~   74 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKG   74 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHT---TCEEEEECH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHh---CCcEEEEEH
Confidence            34567788999999999999998876   666666654

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.61  E-value=0.24  Score=42.91  Aligned_cols=56  Identities=13%  Similarity=0.120  Sum_probs=41.9

Q ss_pred             chhhhhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873            5 DQDQDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus         5 ~~~~~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      +.++.+.++++..++.   ....| .-+..|--|+|||-++...+......|++|+++--
T Consensus        85 T~~Q~~ai~ei~~d~~---~~~~m-~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~P  140 (264)
T d1gm5a3          85 TNAQKRAHQEIRNDMI---SEKPM-NRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP  140 (264)
T ss_dssp             CHHHHHHHHHHHHHHH---SSSCC-CCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred             CchHHHHHHHHHHHhh---ccCcc-eeeeeccccccccHHHHHHHHHHHhcccceeEEee
Confidence            4567777777766655   22222 23567899999999999999999999999998753

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=87.48  E-value=0.26  Score=43.50  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=25.7

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +-+.+.|.+|||||.+|-++|..+   +.....+|+-
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~~---~~~~~~i~~s   83 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEAT   83 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred             ceEEEECCCCCCHHHHHHHHhhcc---ccchhccccc
Confidence            334456999999999999999875   4556777764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.38  E-value=0.2  Score=42.24  Aligned_cols=27  Identities=30%  Similarity=0.346  Sum_probs=22.4

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAE   54 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~   54 (365)
                      ...++++|..|+||||+|..++..+-.
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            345678899999999999999988753

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=87.34  E-value=0.17  Score=41.12  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=18.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPS   58 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~r   58 (365)
                      +.+.|+.|+||||+|..    |.++|++
T Consensus        17 vl~~G~sG~GKStlal~----l~~~g~~   40 (176)
T d1kkma_          17 VLITGDSGVGKSETALE----LVQRGHR   40 (176)
T ss_dssp             EEEECCTTSCHHHHHHH----HHHTTCE
T ss_pred             EEEEeCCCCCHHHHHHH----HHHcCCe
Confidence            45669999999998865    4457874

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=87.01  E-value=0.38  Score=40.77  Aligned_cols=54  Identities=22%  Similarity=0.208  Sum_probs=38.2

Q ss_pred             hhhhhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873            6 QDQDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus         6 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      .++.++.+++..++.    +..+...+..|--|+|||-++...+......|++|+++-
T Consensus        58 ~~Q~~~~~~i~~~~~----~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~  111 (233)
T d2eyqa3          58 PDQAQAINAVLSDMC----QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV  111 (233)
T ss_dssp             HHHHHHHHHHHHHHH----SSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEEC
T ss_pred             hhHHHHHHHHHHHHh----ccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEc
Confidence            344445554444433    222334455699999999999999999999999999986

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=86.91  E-value=0.23  Score=45.12  Aligned_cols=35  Identities=23%  Similarity=0.208  Sum_probs=26.9

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      .++.+++.|.+|+|||++|.++|..+   |.+++-+++
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~---~~~~i~in~  187 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNL  187 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSS
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEEC
Confidence            34578888999999999999999876   455555443

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=86.83  E-value=0.19  Score=41.77  Aligned_cols=24  Identities=21%  Similarity=0.223  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHH
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILL   52 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~l   52 (365)
                      ++++++|..||||||+.-.|....
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            467899999999999998776643

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.82  E-value=0.4  Score=38.72  Aligned_cols=32  Identities=19%  Similarity=0.266  Sum_probs=24.3

Q ss_pred             EEeCCCCCcHHHHHHHHHHHHH-HCCCCEEEEe
Q 017873           32 FVGGKGGVGKTTCSSILSILLA-EVRPSVLIIS   63 (365)
Q Consensus        32 ~~sgKGGvGKTT~aa~lA~~la-~~G~rVLLiD   63 (365)
                      ++....|.|||+++..++.... +.|.+++++-
T Consensus        27 lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~   59 (200)
T d1wp9a1          27 LIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLA   59 (200)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHHHSCSCEEEEC
T ss_pred             EEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEc
Confidence            3457899999999888776555 5678887775

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.75  E-value=0.15  Score=40.53  Aligned_cols=35  Identities=23%  Similarity=0.455  Sum_probs=28.3

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~   67 (365)
                      |+|+|++|-||.|     .++|..|++.|++|.+.+-|+.
T Consensus         1 Mki~vigGaG~iG-----~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLG-----KGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHH-----HHHHHHHHTTTCEEEEEESSHH
T ss_pred             CEEEEEeCCcHHH-----HHHHHHHHHCCCEEEEEECCHH
Confidence            5788886666665     5689999999999999998853

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.49  E-value=0.2  Score=40.59  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=19.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHH
Q 017873           31 VFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      ++++|..|+||||++-.|+..+.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            67889999999999988866543

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=86.43  E-value=0.33  Score=38.60  Aligned_cols=44  Identities=20%  Similarity=0.188  Sum_probs=30.5

Q ss_pred             hhhcchhhHHhhhc---CCCeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873           11 ELEIPEGSVRNILE---QDSLKWVFVGGKGGVGKTTCSSILSILLAE   54 (365)
Q Consensus        11 ~~~~~~~~l~~~~~---~~~~~i~~~sgKGGvGKTT~aa~lA~~la~   54 (365)
                      +..++-..|-..+.   .++-.+++..|.=|+||||++..++.++.-
T Consensus        13 ~t~~lg~~la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          13 SMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            33444444444442   234467889999999999999999998743

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.74  E-value=0.13  Score=43.05  Aligned_cols=33  Identities=27%  Similarity=0.318  Sum_probs=24.8

Q ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        29 ~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      +++++.|--|+||||.+..|+..|...   +.++..
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~L~~~---~~~~~~   36 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKKLQPN---CKLLKF   36 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHTTTS---EEEEES
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhC---CEEEEE
Confidence            345667889999999999999888654   445544

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.50  E-value=0.24  Score=41.58  Aligned_cols=37  Identities=19%  Similarity=0.149  Sum_probs=29.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCC
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~   66 (365)
                      --|.+++|=-|+||||+-.++...  ..|+|+.+|--|.
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~--~~~~riaVI~Ne~   39 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEF   39 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSSC
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhc--CCCCcEEEEEecc
Confidence            346788899999999997777553  5689999998774

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.15  E-value=0.1  Score=43.73  Aligned_cols=27  Identities=30%  Similarity=0.407  Sum_probs=23.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAE   54 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~   54 (365)
                      ++++++-|--|+||||++..|+..|..
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            578888899999999999999998744

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=84.98  E-value=0.56  Score=38.64  Aligned_cols=34  Identities=26%  Similarity=0.279  Sum_probs=27.5

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      .+|+-++  |=.||||++..++..|...|++|.++-
T Consensus         5 ~~vI~IT--GT~GKTTt~~~l~~iL~~~g~~~~~~g   38 (234)
T d1e8ca3           5 LRLVGVT--GTNGKTTTTQLLAQWSQLLGEISAVMG   38 (234)
T ss_dssp             SEEEEEE--SSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEE--CCCcHHHHHHHHHHHHHHCCCCeEEEC
Confidence            4555444  445999999999999999999999874

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=84.96  E-value=0.23  Score=40.10  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=18.4

Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCC
Q 017873           30 WVFVGGKGGVGKTTCSSILSILLAEVRPS   58 (365)
Q Consensus        30 i~~~sgKGGvGKTT~aa~lA~~la~~G~r   58 (365)
                      =+.+.|+.|+||||+|..    |.++|++
T Consensus        17 gvli~G~sg~GKS~la~~----l~~~g~~   41 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALE----LIKRGHR   41 (169)
T ss_dssp             EEEEEESTTSSHHHHHHH----HHHTTCE
T ss_pred             EEEEEeCCCCCHHHHHHH----HHHcCCe
Confidence            356678999999997754    4456874

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=84.84  E-value=0.22  Score=40.55  Aligned_cols=24  Identities=29%  Similarity=0.583  Sum_probs=18.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCC
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPS   58 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~r   58 (365)
                      +++.|+.|+||||+|..|.    ++|++
T Consensus        18 vli~G~sG~GKS~lal~l~----~~G~~   41 (177)
T d1knxa2          18 VLLTGRSGIGKSECALDLI----NKNHL   41 (177)
T ss_dssp             EEEEESSSSSHHHHHHHHH----TTTCE
T ss_pred             EEEEcCCCCCHHHHHHHHH----HcCCc
Confidence            4566999999999987654    57874

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.51  E-value=0.35  Score=41.41  Aligned_cols=35  Identities=17%  Similarity=0.223  Sum_probs=26.0

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeC
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~   64 (365)
                      .++=+.+.|..|+|||+++.++|..   .|..++.+++
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~---~~~~~~~i~~   71 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANE---TGAFFFLING   71 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH---TTCEEEEECH
T ss_pred             CCceeEEecCCCCCchHHHHHHHHH---hCCeEEEEEc
Confidence            3444566799999999999888875   4666666654

>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Translocation ATPase SecA, nucleotide-binding domains
species: Bacillus subtilis [TaxId: 1423]

Probab=84.35  E-value=0.43  Score=41.22  Aligned_cols=34  Identities=26%  Similarity=0.270  Sum_probs=29.9

Q ss_pred             EEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCC
Q 017873           32 FVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (365)
Q Consensus        32 ~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D   65 (365)
                      +.-=|-|.|||.+|+..|...|..|+.|-+|..+
T Consensus        97 iaem~TGEGKTL~a~l~a~l~al~g~~vhvvTvN  130 (273)
T d1tf5a3          97 IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVN  130 (273)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESS
T ss_pred             heeecCCCcchhHHHHHHHHHHhcCCCceEEecC
Confidence            3344899999999999999889999999999987

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=83.76  E-value=0.2  Score=44.95  Aligned_cols=33  Identities=27%  Similarity=0.463  Sum_probs=30.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEe
Q 017873           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (365)
Q Consensus        31 ~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD   63 (365)
                      |++-|-=|+||||++..|+..+...|.+|+++.
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~   40 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFAITPNRILLIG   40 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTTTSGGGEEEEC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence            577889999999999999999998899998886

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=83.26  E-value=0.61  Score=39.64  Aligned_cols=67  Identities=13%  Similarity=0.267  Sum_probs=43.0

Q ss_pred             hhhhhcchhhHHhhhcCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCEEEEeCCCCCC---hhhHhhcc
Q 017873            9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN---LSDAFQQR   77 (365)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~i~~~sgKGGvGKTT~aa~lA~~la~~G~rVLLiD~D~~~~---l~~~~~~~   77 (365)
                      ++.++.+...+........+  +++.|..|+|||++|..+.............+|+..-..   ...+||..
T Consensus         6 S~~~~~~~~~~~~~a~~~~p--vlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~~~~~~lfg~~   75 (247)
T d1ny5a2           6 SPKMKEILEKIKKISCAECP--VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYE   75 (247)
T ss_dssp             SHHHHHHHHHHHHHTTCCSC--EEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBC
T ss_pred             CHHHHHHHHHHHHHhCCCCC--EEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhcccHHHhcCcc
Confidence            35666777777777665544  456699999999999988764444445666666653322   23456543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=82.99  E-value=0.41  Score=42.56  Aligned_cols=27  Identities=37%  Similarity=0.412  Sum_probs=22.8

Q ss_pred             CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 017873           27 SLKWVFVGGKGGVGKTTCSSILSILLA   53 (365)
Q Consensus        27 ~~~i~~~sgKGGvGKTT~aa~lA~~la   53 (365)
                      ++-++++.|.+|+|||.+|-++|..+.
T Consensus       122 ~~g~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         122 ASGMVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             ESEEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHhc
Confidence            344667789999999999999999875

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=82.96  E-value=0.31  Score=38.27  Aligned_cols=23  Identities=39%  Similarity=0.528  Sum_probs=16.9

Q ss_pred             CCCeEEEEEeCCCCCcHHHHHHHH
Q 017873           25 QDSLKWVFVGGKGGVGKTTCSSIL   48 (365)
Q Consensus        25 ~~~~~i~~~sgKGGvGKTT~aa~l   48 (365)
                      ++..+|+++ |.+||||||+-..+
T Consensus        11 ~k~~kI~lv-G~~~vGKTsLl~~l   33 (186)
T d1f6ba_          11 KKTGKLVFL-GLDNAGKTTLLHML   33 (186)
T ss_dssp             TCCEEEEEE-EETTSSHHHHHHHH
T ss_pred             CCCCEEEEE-CCCCCCHHHHHHHH
Confidence            445566655 78999999996654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=81.85  E-value=0.39  Score=37.18  Aligned_cols=21  Identities=29%  Similarity=0.491  Sum_probs=15.7

Q ss_pred             eEEEEEeCCCCCcHHHHHHHHH
Q 017873           28 LKWVFVGGKGGVGKTTCSSILS   49 (365)
Q Consensus        28 ~~i~~~sgKGGvGKTT~aa~lA   49 (365)
                      .+|++ -|++||||||+--.|.
T Consensus         2 ~kI~l-vG~~nvGKSsLin~l~   22 (161)
T d2gj8a1           2 MKVVI-AGRPNAGKSSLLNALA   22 (161)
T ss_dssp             EEEEE-EESTTSSHHHHHHHHH
T ss_pred             CEEEE-ECCCCCCHHHHHHHHh
Confidence            45554 4899999999876554

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=80.88  E-value=0.42  Score=37.74  Aligned_cols=29  Identities=24%  Similarity=0.400  Sum_probs=21.3

Q ss_pred             HHhhhcCCCeEEEEEeCCCCCcHHHHHHHH
Q 017873           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSIL   48 (365)
Q Consensus        19 l~~~~~~~~~~i~~~sgKGGvGKTT~aa~l   48 (365)
                      +..+..++..+|+++ |.+||||||+-..+
T Consensus         4 ~~~~~~~k~~kIvlv-G~~~vGKTSli~rl   32 (173)
T d1e0sa_           4 LSKIFGNKEMRILML-GLDAAGKTTILYKL   32 (173)
T ss_dssp             HHHHHTTCCEEEEEE-EETTSSHHHHHHHT
T ss_pred             hhhhhCCCeEEEEEE-CCCCCCHHHHHHHH
Confidence            344556666776655 89999999998754