Citrus Sinensis ID: 017888

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
MKSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTEHAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQLVDIQRLNSQ
cccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEcccccccccEEEEEEEEEcccccEEEEcccccccccccccccEEEcccccccccccEEEEcccEEEEEEEEEccccHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHccEEEEEEcccccccccccccccEEEEcccHHHHHcccccccEEEEEccHHHHHHHHHHcccccccccccccHHHHHHcccc
ccEEEEEEcccccccccccccccccccccHHcccccccccccccccccccccccccHHccccccccccccccccccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccHHHHHcccccccccHHHHHHHHHHHHccEEEEEccccccccccEEEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEccccccccccEEEEccccEEEEEEEEcccHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHHHHcccEEEEEEcccccccccEEEEEcEEEEccccEEEEEcccccEEEEEEccHHHHHHHHHHccHHHHccHHHHHHHHHHccccc
MKSAVAITSKIHLNlnlrrnhlysplsrsiflgkakpvfqspplirthssnpnpnpimassskpeqarappalplptppvakfkvglcqlsvtaDKERNIAHARRAIEEAAEKGAKLillpeiwnspyshdsfpvyaedidaggdaspstAMLSEVARLLKITIVggsipersgdrlyntccvfgsdgklIAKHRKihlfdidipgkitfiesksltagetptivdtdvgrigigiCYDIRFQELAMIYGARGahlicypgafnmttgpLHWELLQRARAtdnqlyvatcspardegagyvawghstlvgpfgevlattehAEDIIIAEIDYSILELRrtslplskqrrgdlyqlVDIQRLNSQ
MKSAVAITSkihlnlnlrrNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVggsipersgdrlYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIesksltagetptivdtdvgriGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTEHAEDIIIAEIDYSILELRRtslplskqrrgdlyqlvdiqrlnsq
MKSAVAITSKIhlnlnlrrnhlYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMASSSKPEQARappalplptppVAKFKVGLCQLSVTADKErniaharraieeaaekgaklillPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTEHaediiiaeidYSILELRRTSLPLSKQRRGDLYQLVDIQRLNSQ
*****AITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPV*****************************************VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDA********AMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTEHAEDIIIAEIDYSILELRRTSLPLS***RGDLYQLVDI******
*********KIHLNLNLRRN*LYS*********************************************************KFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDID**GDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTEHAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQLV*IQ*****
MKSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPI*************PALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTEHAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQLVDIQRLNSQ
*KSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNP******************PALPLPTPPVAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTEHAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQLVDIQR****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMASSSKPEQARAPPALPLPTPPVAKFKVGLCQLSVxxxxxxxxxxxxxxxxxxxxxGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTEHAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQLVDIQRLNSQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query364 2.2.26 [Sep-21-2011]
Q2T9R6276 Omega-amidase NIT2 OS=Bos yes no 0.744 0.981 0.557 2e-86
Q497B0276 Omega-amidase NIT2 OS=Rat yes no 0.744 0.981 0.557 4e-86
Q28IE5276 Omega-amidase NIT2 OS=Xen yes no 0.744 0.981 0.550 8e-86
Q6INI7276 Omega-amidase NIT2-B OS=X N/A no 0.744 0.981 0.547 1e-85
Q9NQR4276 Omega-amidase NIT2 OS=Hom yes no 0.739 0.974 0.554 2e-85
Q4VBV9277 Omega-amidase NIT2 OS=Dan yes no 0.758 0.996 0.526 3e-85
Q6IR61276 Omega-amidase NIT2-A OS=X N/A no 0.744 0.981 0.561 1e-84
Q10166322 UPF0012 hydrolase C26A3.1 yes no 0.744 0.841 0.547 2e-84
Q9JHW2276 Omega-amidase NIT2 OS=Mus yes no 0.744 0.981 0.543 3e-84
Q5R4L6275 Omega-amidase NIT2 OS=Pon yes no 0.736 0.974 0.554 9e-84
>sp|Q2T9R6|NIT2_BOVIN Omega-amidase NIT2 OS=Bos taurus GN=NIT2 PE=2 SV=1 Back     alignment and function desciption
 Score =  319 bits (817), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 154/276 (55%), Positives = 197/276 (71%), Gaps = 5/276 (1%)

Query: 80  VAKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAED 139
           +A F++ L QL V++ K  N+  A   I EA+++GA+++ LPE +NSPY    FP YAE 
Sbjct: 1   MATFRLALIQLQVSSIKSENLTRACGLIREASKQGAQIVSLPECFNSPYGTKYFPDYAEK 60

Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I   GD   ST  LSEVA+   + ++GGSIPE+   +LYNTC VFG DG L+ KHRK+HL
Sbjct: 61  IP--GD---STQKLSEVAKECSMYVIGGSIPEKDAGKLYNTCAVFGPDGTLLVKHRKLHL 115

Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
           FDID+PGKITF ES++L+ G++ ++ DT   R+G+GICYDIRF ELA IY  RG  L+ Y
Sbjct: 116 FDIDVPGKITFQESETLSPGDSFSLFDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVY 175

Query: 260 PGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATT 319
           PGAFN+TTGP HWELLQR RA DNQ+YVAT SPARDE A YVAWGHST+V P+GEVLA  
Sbjct: 176 PGAFNLTTGPAHWELLQRGRAVDNQVYVATASPARDEKASYVAWGHSTVVNPWGEVLAKA 235

Query: 320 EHAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQL 355
              E I+ A+ID   L   R  +P+  Q+R DLY++
Sbjct: 236 GTEETIVYADIDLKKLAEIRQQIPIFSQKRSDLYEV 271
Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 3
>sp|Q497B0|NIT2_RAT Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE=1 SV=1 Back     alignment and function description
>sp|Q28IE5|NIT2_XENTR Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 PE=2 SV=1 Back     alignment and function description
>sp|Q6INI7|NIT2B_XENLA Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1 Back     alignment and function description
>sp|Q9NQR4|NIT2_HUMAN Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV=1 Back     alignment and function description
>sp|Q4VBV9|NIT2_DANRE Omega-amidase NIT2 OS=Danio rerio GN=nit2 PE=2 SV=1 Back     alignment and function description
>sp|Q6IR61|NIT2A_XENLA Omega-amidase NIT2-A OS=Xenopus laevis GN=nit2a PE=2 SV=1 Back     alignment and function description
>sp|Q10166|YAUB_SCHPO UPF0012 hydrolase C26A3.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC26A3.11 PE=3 SV=1 Back     alignment and function description
>sp|Q9JHW2|NIT2_MOUSE Omega-amidase NIT2 OS=Mus musculus GN=Nit2 PE=1 SV=1 Back     alignment and function description
>sp|Q5R4L6|NIT2_PONAB Omega-amidase NIT2 OS=Pongo abelii GN=NIT2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query364
343887307418 carbon-nitrogen hydrolase family protein 0.928 0.808 0.938 0.0
224092113370 predicted protein [Populus trichocarpa] 0.978 0.962 0.786 1e-159
297807251365 carbon-nitrogen hydrolase family protein 0.972 0.969 0.773 1e-154
22326744369 omega-amidase [Arabidopsis thaliana] gi| 0.826 0.815 0.877 1e-153
357465811357 Omega-amidase NIT2 [Medicago truncatula] 0.928 0.946 0.803 1e-153
225429638364 PREDICTED: omega-amidase NIT2-like [Viti 0.868 0.868 0.828 1e-153
296081697307 unnamed protein product [Vitis vinifera] 0.843 1.0 0.866 1e-152
7573371318 putative protein [Arabidopsis thaliana] 0.843 0.965 0.842 1e-151
226531330356 uncharacterized protein LOC100280276 [Ze 0.873 0.893 0.782 1e-149
356514703352 PREDICTED: omega-amidase NIT2-like [Glyc 0.942 0.974 0.787 1e-149
>gi|343887307|dbj|BAK61853.1| carbon-nitrogen hydrolase family protein [Citrus unshiu] Back     alignment and taxonomy information
 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/360 (93%), Positives = 338/360 (93%), Gaps = 22/360 (6%)

Query: 1   MKSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMAS 60
           MKSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMAS
Sbjct: 1   MKSAVAITSKIHLNLNLRRNHLYSPLSRSIFLGKAKPVFQSPPLIRTHSSNPNPNPIMAS 60

Query: 61  SSKPEQARAPPALPLPTPPVAK----------------------FKVGLCQLSVTADKER 98
           SSKPEQARAPPALPLPTPPVAK                      FKVGLCQLSVTADKER
Sbjct: 61  SSKPEQARAPPALPLPTPPVAKAISHFAYFLNLDDCYLCSVVALFKVGLCQLSVTADKER 120

Query: 99  NIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 158
           NIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR
Sbjct: 121 NIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVAR 180

Query: 159 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTA 218
           LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTA
Sbjct: 181 LLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTA 240

Query: 219 GETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRA 278
           GETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRA
Sbjct: 241 GETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRA 300

Query: 279 RATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTEHAEDIIIAEIDYSILELR 338
           RATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTEHAEDIIIAEIDYSILELR
Sbjct: 301 RATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTEHAEDIIIAEIDYSILELR 360

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224092113|ref|XP_002309478.1| predicted protein [Populus trichocarpa] gi|222855454|gb|EEE93001.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297807251|ref|XP_002871509.1| carbon-nitrogen hydrolase family protein [Arabidopsis lyrata subsp. lyrata] gi|297317346|gb|EFH47768.1| carbon-nitrogen hydrolase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22326744|ref|NP_196765.2| omega-amidase [Arabidopsis thaliana] gi|19715574|gb|AAL91613.1| AT5g12040/F14F18_210 [Arabidopsis thaliana] gi|20147243|gb|AAM10335.1| AT5g12040/F14F18_210 [Arabidopsis thaliana] gi|332004371|gb|AED91754.1| omega-amidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357465811|ref|XP_003603190.1| Omega-amidase NIT2 [Medicago truncatula] gi|355492238|gb|AES73441.1| Omega-amidase NIT2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|225429638|ref|XP_002279687.1| PREDICTED: omega-amidase NIT2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081697|emb|CBI20702.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|7573371|emb|CAB87677.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|226531330|ref|NP_001146676.1| uncharacterized protein LOC100280276 [Zea mays] gi|219888265|gb|ACL54507.1| unknown [Zea mays] gi|414865104|tpg|DAA43661.1| TPA: hypothetical protein ZEAMMB73_296008 [Zea mays] gi|414865105|tpg|DAA43662.1| TPA: hypothetical protein ZEAMMB73_296008 [Zea mays] Back     alignment and taxonomy information
>gi|356514703|ref|XP_003526043.1| PREDICTED: omega-amidase NIT2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query364
TAIR|locus:2143039369 AT5G12040 [Arabidopsis thalian 0.936 0.924 0.7 7e-125
UNIPROTKB|Q2T9R6276 NIT2 "Omega-amidase NIT2" [Bos 0.739 0.974 0.514 1.1e-69
RGD|1310494276 Nit2 "nitrilase family, member 0.739 0.974 0.521 1.4e-69
UNIPROTKB|F1MJ59276 NIT2 "Omega-amidase NIT2" [Bos 0.733 0.967 0.518 6.3e-69
UNIPROTKB|Q9NQR4276 NIT2 "Omega-amidase NIT2" [Hom 0.733 0.967 0.510 1.7e-68
MGI|MGI:1261838276 Nit2 "nitrilase family, member 0.733 0.967 0.514 2.1e-68
UNIPROTKB|F1PTD1283 NIT2 "Uncharacterized protein" 0.739 0.950 0.514 4.4e-68
ZFIN|ZDB-GENE-050522-65284 nit2 "nitrilase family, member 0.75 0.961 0.492 7.2e-68
POMBASE|SPAC26A3.11322 SPAC26A3.11 "amidohydrolase" [ 0.744 0.841 0.5 2.4e-67
UNIPROTKB|F1NP29283 NIT2 "Uncharacterized protein" 0.730 0.939 0.507 2.5e-65
TAIR|locus:2143039 AT5G12040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1227 (437.0 bits), Expect = 7.0e-125, P = 7.0e-125
 Identities = 245/350 (70%), Positives = 270/350 (77%)

Query:    24 SPLSRSI-----FLGKAKPVFQSPPLIRTHSSNPNP----NPIMASSSKPEQARXXXXXX 74
             +PLSR I     FL K  P   +   ++  SS+ +     +  MASS  PEQAR      
Sbjct:    20 NPLSRFISLKSNFLPKLSPRSITSHTLKLPSSSTSALRSISSSMASSFNPEQARVPSALP 79

Query:    75 XXXXXVAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFP 134
                  + KF +GLCQLSVT+DK+                       PEIWNSPYS+DSFP
Sbjct:    80 LPAPPLTKFNIGLCQLSVTSDKKRNISHAKKAIEEAASKGAKLVLLPEIWNSPYSNDSFP 139

Query:   135 VYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKH 194
             VYAE+IDAGGDASPSTAMLSEV++ LKITI+GGSIPER GDRLYNTCCVFGSDG+L AKH
Sbjct:   140 VYAEEIDAGGDASPSTAMLSEVSKRLKITIIGGSIPERVGDRLYNTCCVFGSDGELKAKH 199

Query:   195 RKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGA 254
             RKIHLFDIDIPGKITF+ESK+LTAGETPTIVDTDVGRIGIGICYDIRFQELAMIY ARGA
Sbjct:   200 RKIHLFDIDIPGKITFMESKTLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYAARGA 259

Query:   255 HLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGE 314
             HL+CYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARD GAGY AWGHSTLVGPFGE
Sbjct:   260 HLLCYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDSGAGYTAWGHSTLVGPFGE 319

Query:   315 VLATTEHXXXXXXXXXXYSILELRRTSLPLSKQRRGDLYQLVDIQRLNSQ 364
             VLATTEH          YSILE RRTSLPL++QRRGDLYQLVD+QRL+S+
Sbjct:   320 VLATTEHEEAIIIAEIDYSILEQRRTSLPLNRQRRGDLYQLVDVQRLDSK 369
GO:0006807 "nitrogen compound metabolic process" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|Q2T9R6 NIT2 "Omega-amidase NIT2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1310494 Nit2 "nitrilase family, member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MJ59 NIT2 "Omega-amidase NIT2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NQR4 NIT2 "Omega-amidase NIT2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1261838 Nit2 "nitrilase family, member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PTD1 NIT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-65 nit2 "nitrilase family, member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
POMBASE|SPAC26A3.11 SPAC26A3.11 "amidohydrolase" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|F1NP29 NIT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R4L6NIT2_PONAB3, ., 5, ., 1, ., 30.55470.73620.9745yesno
Q2T9R6NIT2_BOVIN3, ., 5, ., 1, ., 30.55790.74450.9818yesno
Q9JHW2NIT2_MOUSE3, ., 5, ., 1, ., 30.54340.74450.9818yesno
Q10166YAUB_SCHPO3, ., 5, ., -, ., -0.54740.74450.8416yesno
Q9NQR4NIT2_HUMAN3, ., 5, ., 1, ., 30.55470.73900.9746yesno
Q54JM9NIT2_DICDI3, ., 5, ., -, ., -0.50350.750.8323yesno
Q4VBV9NIT2_DANRE3, ., 5, ., 1, ., 30.52660.75820.9963yesno
Q497B0NIT2_RAT3, ., 5, ., 1, ., 30.55790.74450.9818yesno
Q28IE5NIT2_XENTR3, ., 5, ., 1, ., 30.55070.74450.9818yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.30.914
3rd Layer3.5.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
cd07572265 cd07572, nit, Nit1, Nit 2, and related proteins, a 1e-150
cd07197253 cd07197, nitrilase, Nitrilase superfamily, includi 3e-75
cd07583253 cd07583, nitrilase_5, Uncharacterized subgroup of 4e-75
COG0388274 COG0388, COG0388, Predicted amidohydrolase [Genera 1e-74
cd07581255 cd07581, nitrilase_3, Uncharacterized subgroup of 6e-65
cd07573284 cd07573, CPA, N-carbamoylputrescine amidohydrolase 7e-57
PLN02798286 PLN02798, PLN02798, nitrilase 1e-55
pfam00795172 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase 2e-48
cd07584258 cd07584, nitrilase_6, Uncharacterized subgroup of 2e-46
cd07576254 cd07576, R-amidase_like, Pseudomonas sp 2e-45
cd07585261 cd07585, nitrilase_7, Uncharacterized subgroup of 6e-45
cd07580268 cd07580, nitrilase_2, Uncharacterized subgroup of 8e-45
TIGR03381279 TIGR03381, agmatine_aguB, N-carbamoylputrescine am 4e-36
cd07577259 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 2e-34
cd07574280 cd07574, nitrilase_Rim1_like, Uncharacterized subg 2e-34
cd07568287 cd07568, ML_beta-AS_like, mammalian-like beta-alan 7e-32
cd07586269 cd07586, nitrilase_8, Uncharacterized subgroup of 2e-31
PLN02747296 PLN02747, PLN02747, N-carbamolyputrescine amidase 6e-30
cd07564297 cd07564, nitrilases_CHs, Nitrilases, cyanide hydra 7e-27
cd07575252 cd07575, Xc-1258_like, Xanthomonas campestris XC12 4e-23
cd07578258 cd07578, nitrilase_1_R1, First nitrilase domain of 7e-21
cd07579279 cd07579, nitrilase_1_R2, Second nitrilase domain o 3e-20
cd07582294 cd07582, nitrilase_4, Uncharacterized subgroup of 2e-18
cd07587363 cd07587, ML_beta-AS, mammalian-like beta-alanine s 3e-18
cd07570261 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransfe 2e-17
cd07569302 cd07569, DCase, N-carbamyl-D-amino acid amidohydro 3e-17
PRK13981 540 PRK13981, PRK13981, NAD synthetase; Provisional 2e-16
PLN00202405 PLN00202, PLN00202, beta-ureidopropionase 9e-16
cd07571270 cd07571, ALP_N-acyl_transferase, Apolipoprotein N- 1e-14
PLN02504346 PLN02504, PLN02504, nitrilase 3e-14
TIGR04048301 TIGR04048, nitrile_sll0784, putative nitrilase, sl 5e-13
PRK10438256 PRK10438, PRK10438, C-N hydrolase family amidase; 3e-12
cd07567299 cd07567, biotinidase_like, biotinidase and vanins 4e-12
COG0815518 COG0815, Lnt, Apolipoprotein N-acyltransferase [Ce 2e-09
TIGR00546391 TIGR00546, lnt, apolipoprotein N-acyltransferase 4e-09
cd07565291 cd07565, aliphatic_amidase, aliphatic amidases (cl 1e-08
PRK02628 679 PRK02628, nadE, NAD synthetase; Reviewed 3e-08
cd07566295 cd07566, ScNTA1_like, Saccharomyces cerevisiae N-t 1e-07
PRK00302505 PRK00302, lnt, apolipoprotein N-acyltransferase; R 3e-06
PRK13286345 PRK13286, amiE, acylamide amidohydrolase; Provisio 0.003
>gnl|CDD|143596 cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information 
 Score =  423 bits (1090), Expect = e-150
 Identities = 132/268 (49%), Positives = 178/268 (66%), Gaps = 5/268 (1%)

Query: 84  KVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAG 143
           +V L Q++ TADKE N+A A+  IEEAA +GAKL++LPE +N P   D+F +   + +  
Sbjct: 1   RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGD 60

Query: 144 GDASPSTAMLSEVARLLKITIVGGSIPERSG--DRLYNTCCVFGSDGKLIAKHRKIHLFD 201
           G   P+   LSE+A+   I +VGGSIPER     ++YNT  VF  DG+L+A++RKIHLFD
Sbjct: 61  G---PTLQALSELAKEHGIWLVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFD 117

Query: 202 IDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPG 261
           +D+PG I++ ES +LT G+   +VDT  G+IG+GICYD+RF ELA     +GA ++  P 
Sbjct: 118 VDVPGGISYRESDTLTPGDEVVVVDTPFGKIGLGICYDLRFPELARALARQGADILTVPA 177

Query: 262 AFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTEH 321
           AF MTTGP HWELL RARA +NQ YV   + A D  AG   +GHS +V P+GEVLA    
Sbjct: 178 AFTMTTGPAHWELLLRARAIENQCYVVAAAQAGDHEAGRETYGHSMIVDPWGEVLAEAGE 237

Query: 322 AEDIIIAEIDYSILELRRTSLPLSKQRR 349
            E +++AEID   LE  R  +P+ K RR
Sbjct: 238 GEGVVVAEIDLDRLEEVRRQIPVLKHRR 265

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 10. Length = 265
>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>gnl|CDD|143607 cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|223465 COG0388, COG0388, Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>gnl|CDD|143605 cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143597 cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information
>gnl|CDD|215428 PLN02798, PLN02798, nitrilase Back     alignment and domain information
>gnl|CDD|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase Back     alignment and domain information
>gnl|CDD|143608 cd07584, nitrilase_6, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143600 cd07576, R-amidase_like, Pseudomonas sp Back     alignment and domain information
>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143604 cd07580, nitrilase_2, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|188311 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase Back     alignment and domain information
>gnl|CDD|143601 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143598 cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases) Back     alignment and domain information
>gnl|CDD|143592 cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>gnl|CDD|143610 cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|215398 PLN02747, PLN02747, N-carbamolyputrescine amidase Back     alignment and domain information
>gnl|CDD|143588 cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>gnl|CDD|143599 cd07575, Xc-1258_like, Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143602 cd07578, nitrilase_1_R1, First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143603 cd07579, nitrilase_1_R2, Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143606 cd07582, nitrilase_4, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143611 cd07587, ML_beta-AS, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>gnl|CDD|143593 cd07569, DCase, N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases) Back     alignment and domain information
>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional Back     alignment and domain information
>gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase Back     alignment and domain information
>gnl|CDD|143595 cd07571, ALP_N-acyl_transferase, Apolipoprotein N-acyl transferase (class 9 nitrilases) Back     alignment and domain information
>gnl|CDD|178120 PLN02504, PLN02504, nitrilase Back     alignment and domain information
>gnl|CDD|188563 TIGR04048, nitrile_sll0784, putative nitrilase, sll0784 family Back     alignment and domain information
>gnl|CDD|182461 PRK10438, PRK10438, C-N hydrolase family amidase; Provisional Back     alignment and domain information
>gnl|CDD|143591 cd07567, biotinidase_like, biotinidase and vanins (class 4 nitrilases) Back     alignment and domain information
>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|233016 TIGR00546, lnt, apolipoprotein N-acyltransferase Back     alignment and domain information
>gnl|CDD|143589 cd07565, aliphatic_amidase, aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>gnl|CDD|235057 PRK02628, nadE, NAD synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|143590 cd07566, ScNTA1_like, Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases) Back     alignment and domain information
>gnl|CDD|234721 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|237335 PRK13286, amiE, acylamide amidohydrolase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 364
cd07587363 ML_beta-AS mammalian-like beta-alanine synthase (b 100.0
TIGR03381279 agmatine_aguB N-carbamoylputrescine amidase. Membe 100.0
PLN02798286 nitrilase 100.0
PRK10438256 C-N hydrolase family amidase; Provisional 100.0
cd07568287 ML_beta-AS_like mammalian-like beta-alanine syntha 100.0
PLN00202405 beta-ureidopropionase 100.0
cd07572265 nit Nit1, Nit 2, and related proteins, and the Nit 100.0
cd07564297 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s 100.0
PLN02504346 nitrilase 100.0
PLN02747296 N-carbamolyputrescine amidase 100.0
cd07573284 CPA N-carbamoylputrescine amidohydrolase (CPA) (cl 100.0
cd07583253 nitrilase_5 Uncharacterized subgroup of the nitril 100.0
cd07576254 R-amidase_like Pseudomonas sp. MCI3434 R-amidase a 100.0
cd07580268 nitrilase_2 Uncharacterized subgroup of the nitril 100.0
KOG0807295 consensus Carbon-nitrogen hydrolase [Amino acid tr 100.0
cd07579279 nitrilase_1_R2 Second nitrilase domain of an uncha 100.0
cd07569302 DCase N-carbamyl-D-amino acid amidohydrolase (DCas 100.0
cd07585261 nitrilase_7 Uncharacterized subgroup of the nitril 100.0
cd07565291 aliphatic_amidase aliphatic amidases (class 2 nitr 100.0
cd07584258 nitrilase_6 Uncharacterized subgroup of the nitril 100.0
cd07581255 nitrilase_3 Uncharacterized subgroup of the nitril 100.0
cd07574280 nitrilase_Rim1_like Uncharacterized subgroup of th 100.0
cd07577259 Ph0642_like Pyrococcus horikoshii Ph0642 and relat 100.0
COG0388274 Predicted amidohydrolase [General function predict 100.0
cd07578258 nitrilase_1_R1 First nitrilase domain of an unchar 100.0
cd07575252 Xc-1258_like Xanthomonas campestris XC1258 and rel 100.0
cd07586269 nitrilase_8 Uncharacterized subgroup of the nitril 100.0
cd07570261 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, 100.0
KOG0806298 consensus Carbon-nitrogen hydrolase [Amino acid tr 100.0
PRK13287333 amiF formamidase; Provisional 100.0
cd07567299 biotinidase_like biotinidase and vanins (class 4 n 100.0
PRK13286345 amiE acylamide amidohydrolase; Provisional 100.0
cd07582294 nitrilase_4 Uncharacterized subgroup of the nitril 100.0
cd07197253 nitrilase Nitrilase superfamily, including nitrile 100.0
PRK02628 679 nadE NAD synthetase; Reviewed 100.0
PRK13981 540 NAD synthetase; Provisional 100.0
cd07571270 ALP_N-acyl_transferase Apolipoprotein N-acyl trans 100.0
PLN02339 700 NAD+ synthase (glutamine-hydrolysing) 100.0
cd07566295 ScNTA1_like Saccharomyces cerevisiae N-terminal am 100.0
PRK00302505 lnt apolipoprotein N-acyltransferase; Reviewed 100.0
TIGR00546391 lnt apolipoprotein N-acyltransferase. This enzyme 100.0
KOG0805337 consensus Carbon-nitrogen hydrolase [Amino acid tr 100.0
PF00795186 CN_hydrolase: Carbon-nitrogen hydrolase The Prosit 99.98
PRK12291418 apolipoprotein N-acyltransferase; Reviewed 99.97
KOG0808387 consensus Carbon-nitrogen hydrolase [Amino acid tr 99.96
COG0815518 Lnt Apolipoprotein N-acyltransferase [Cell envelop 99.96
PRK13825388 conjugal transfer protein TraB; Provisional 99.92
KOG2303 706 consensus Predicted NAD synthase, contains CN hydr 99.82
PLN02798 286 nitrilase 84.26
cd07581 255 nitrilase_3 Uncharacterized subgroup of the nitril 81.69
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information 
Probab=100.00  E-value=6.2e-52  Score=402.47  Aligned_cols=275  Identities=25%  Similarity=0.407  Sum_probs=237.1

Q ss_pred             CCCCCCCCCCCceEEEEEecccc--------cCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCc-----cchh
Q 017888           71 PALPLPTPPVAKFKVGLCQLSVT--------ADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSF-----PVYA  137 (364)
Q Consensus        71 ~~~~~~~~~~~~~kIA~vQ~~v~--------~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~-----~~~~  137 (364)
                      ++.++.+...+.||||++|+++.        +|+++|++++.+++++|+++|+|||||||++++||.+...     ..++
T Consensus        52 ~~~~~~~~~~~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~a  131 (363)
T cd07587          52 EAAPEQTRPPRIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFA  131 (363)
T ss_pred             CCChhhcCCCceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHh
Confidence            44556666666799999998753        4899999999999999999999999999999999864321     2233


Q ss_pred             hhhccCCCCchHHHHHHHHHHHcCcEEEEeeeeeec---CCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccc
Q 017888          138 EDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERS---GDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESK  214 (364)
Q Consensus       138 ~~~~~~~~~~~~~~~l~~lA~~~~i~Iv~Gs~~~~~---~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~  214 (364)
                      +..    ..++.++.++++|++++|+|++| +.+++   ++++||++++|+++|+++++|+|+||+..     ..|.|+.
T Consensus       132 e~~----~~g~~~~~l~~lAk~~~i~Iv~g-i~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~-----~~~~E~~  201 (363)
T cd07587         132 ESA----EDGPTTKFCQELAKKYNMVIVSP-ILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRV-----GDFNEST  201 (363)
T ss_pred             hcc----CCChHHHHHHHHHHHcCcEEEEe-eeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCC-----CCcccee
Confidence            322    13679999999999999999988 56665   36899999999999999999999999653     2568999


Q ss_pred             cccCCCC-CeEEecCCeeEEEEEeccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCC
Q 017888          215 SLTAGET-PTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPA  293 (364)
Q Consensus       215 ~~~~G~~-~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~  293 (364)
                      +|.+|+. +.+|+++++|||++||||.+|||++|.++++|||+|++|++|+......+|..++++||+||++||+.+|.+
T Consensus       202 ~f~~G~~~~~vf~t~~griG~~ICyD~~fPe~~r~la~~GAdiil~Psa~~~~~~~~~w~~~~rarAieN~~fVv~~Nrv  281 (363)
T cd07587         202 YYMEGNTGHPVFETQFGKIAVNICYGRHHPLNWLMYGLNGAEIVFNPSATVGALSEPMWPIEARNAAIANSYFTVGINRV  281 (363)
T ss_pred             EEecCCCCCceEEcCCceEEEEEecccCCcHHHHHHHHcCCcEEEECCCcCCCCchHHHHHHHHHHHHhcCcEEEEeccc
Confidence            9999985 789999999999999999999999999999999999999999765555789999999999999999999998


Q ss_pred             CCCC---------------CCeeeeeEeEEECCCCCEeEeCC-CCCcEEEEEEchhhHHHHHhcCCCccccccccchh
Q 017888          294 RDEG---------------AGYVAWGHSTLVGPFGEVLATTE-HAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQL  355 (364)
Q Consensus       294 g~~~---------------~~~~~~G~S~Ii~p~G~il~~~~-~~e~vl~~~ldl~~~~~~r~~~~~~~~~r~~ly~~  355 (364)
                      |...               +...|+|+|+|++|+|++++.+. .+|+++++++|++.+++.|.++|++.+|||++|+.
T Consensus       282 G~e~~~~~~~~~~g~~~~~~~~~f~G~S~Ii~P~G~il~~~~~~~E~ll~adiDl~~i~~~R~~~~~~~~~r~~~y~~  359 (363)
T cd07587         282 GTEVFPNEFTSGDGKPAHKDFGHFYGSSYVAAPDGSRTPGLSRTRDGLLVAELDLNLCRQVKDKWGFRMTARYEMYAD  359 (363)
T ss_pred             cccccccccccccccccccccccccceeEEECCCCCCccCCCCCCCcEEEEEecHHHHHHHHhcCCCCccCCHHHHHH
Confidence            8531               12468999999999999998875 78999999999999999999999999999999964

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase Back     alignment and domain information
>PLN02798 nitrilase Back     alignment and domain information
>PRK10438 C-N hydrolase family amidase; Provisional Back     alignment and domain information
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>PLN00202 beta-ureidopropionase Back     alignment and domain information
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>PLN02504 nitrilase Back     alignment and domain information
>PLN02747 N-carbamolyputrescine amidase Back     alignment and domain information
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07576 R-amidase_like Pseudomonas sp Back     alignment and domain information
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases) Back     alignment and domain information
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases) Back     alignment and domain information
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>COG0388 Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13287 amiF formamidase; Provisional Back     alignment and domain information
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases) Back     alignment and domain information
>PRK13286 amiE acylamide amidohydrolase; Provisional Back     alignment and domain information
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>PRK02628 nadE NAD synthetase; Reviewed Back     alignment and domain information
>PRK13981 NAD synthetase; Provisional Back     alignment and domain information
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases) Back     alignment and domain information
>PLN02339 NAD+ synthase (glutamine-hydrolysing) Back     alignment and domain information
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases) Back     alignment and domain information
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>TIGR00546 lnt apolipoprotein N-acyltransferase Back     alignment and domain information
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production [] Back     alignment and domain information
>PRK12291 apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK13825 conjugal transfer protein TraB; Provisional Back     alignment and domain information
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only] Back     alignment and domain information
>PLN02798 nitrilase Back     alignment and domain information
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
2w1v_A276 Crystal Structure Of Mouse Nitrilase-2 At 1.4a Reso 8e-75
1f89_A291 Crystal Structure Of Saccharomyces Cerevisiae Nit3, 3e-64
1ems_A 440 Crystal Structure Of The C. Elegans Nitfhit Protein 2e-33
3p8k_A281 Crystal Structure Of A Putative Carbon-Nitrogen Fam 9e-17
1j31_A262 Crystal Structure Of Hypothetical Protein Ph0642 Fr 2e-14
2vhh_A405 Crystal Structure Of A Pyrimidine Degrading Enzyme 7e-13
3ivz_A262 Crystal Structure Of Hyperthermophilic Nitrilase Le 2e-12
1fo6_A304 Crystal Structure Analysis Of N-Carbamoyl-D-Amino-A 4e-09
2ggk_A304 The Mutant A302c Of Agrobacterium Radiobacter N-Car 4e-09
1erz_A303 Crystal Structure Of N-Carbamyl-D-Amino Acid Amidoh 7e-09
2ggl_A304 The Mutant A222c Of Agrobacterium Radiobacter N-Car 1e-08
1uf4_A303 Crystal Structure Of C171aV236A MUTANT OF N-Carbamy 2e-08
3hkx_A283 Crystal Structure Analysis Of An Amidase From Neste 4e-08
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution Length = 276 Back     alignment and structure 
Iteration: 1

 Score =  277 bits (708), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 143/281 (50%), Positives = 178/281 (63%), Gaps = 19/281 (6%)
Query: 80  VAKFKVGLCQLSVTADKEXXXXXXXXXXXXXXXXXXXXXXXPEIWNSPYSHDSFPVYAED 139
           ++ F++ L QL V++ K                        PE +NSPY    FP YAE 
Sbjct: 1   MSTFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEK 60
Query: 140 IDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHL 199
           I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHL
Sbjct: 61  I-----PGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHL 115
Query: 200 FDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICY 259
           FDID+PGKITF ESK+L+ G++ +  DT   ++G+GICYD+RF ELA IY  RG  L+ Y
Sbjct: 116 FDIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVY 175
Query: 260 PGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVL--A 317
           PGAFN+TTGP HWELLQRARA DNQ+YVAT SPARD+ A YVAWGHST+V P+G+VL  A
Sbjct: 176 PGAFNLTTGPAHWELLQRARAVDNQVYVATASPARDDKASYVAWGHSTVVDPWGQVLTKA 235
Query: 318 TTEHXXXXXXXXXXYSILELR-----RTSLPLSKQRRGDLY 353
            TE           YS ++L+     R  +P+ KQ+R DLY
Sbjct: 236 GTEE-------TILYSDIDLKKLAEIRQQIPILKQKRADLY 269
>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A Member Of Branch 10 Of The Nitrilase Superfamily Length = 291 Back     alignment and structure
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein Length = 440 Back     alignment and structure
>pdb|3P8K|A Chain A, Crystal Structure Of A Putative Carbon-Nitrogen Family Hydrolase From Staphylococcus Aureus Length = 281 Back     alignment and structure
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From Pyrococcus Horikoshii Length = 262 Back     alignment and structure
>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From Drosophila Melanogaster Length = 405 Back     alignment and structure
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase Length = 262 Back     alignment and structure
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter N-Carbamoyl-D- Amino-Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid Amidohydrolase With A Novel Catalytic Framework Common To Amidohydrolases Length = 303 Back     alignment and structure
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter N-Carbamoyl-D-Amino Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D- Amino Acid Amidohydrolase Length = 303 Back     alignment and structure
>pdb|3HKX|A Chain A, Crystal Structure Analysis Of An Amidase From Nesterenkonia Sp Length = 283 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
2w1v_A276 Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A 1e-153
1f89_A291 32.5 kDa protein YLR351C; nitrilase, dimer, struct 1e-149
1ems_A 440 Nitfhit, NIT-fragIle histidine triad fusion protei 1e-139
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 1e-121
2vhh_A405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 1e-112
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 1e-102
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 1e-100
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 4e-98
2dyu_A334 Formamidase; AMIF, CEK, catalytic triad, helicobac 2e-94
2e11_A266 Hydrolase; dimethylarsenic inhibi complex, cacodyl 2e-88
2uxy_A341 Aliphatic amidase; nitrilase superfamily, hydrolas 8e-86
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 2e-17
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 2e-17
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 2e-16
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 1e-14
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Length = 276 Back     alignment and structure
 Score =  430 bits (1109), Expect = e-153
 Identities = 150/276 (54%), Positives = 191/276 (69%), Gaps = 5/276 (1%)

Query: 81  AKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDI 140
           + F++ L QL V++ K  N+  A   + EAA++GA ++ LPE +NSPY    FP YAE I
Sbjct: 2   STFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKI 61

Query: 141 DAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLF 200
                   ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLF
Sbjct: 62  P-----GESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLF 116

Query: 201 DIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYP 260
           DID+PGKITF ESK+L+ G++ +  DT   ++G+GICYD+RF ELA IY  RG  L+ YP
Sbjct: 117 DIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYP 176

Query: 261 GAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTE 320
           GAFN+TTGP HWELLQRARA DNQ+YVAT SPARD+ A YVAWGHST+V P+G+VL    
Sbjct: 177 GAFNLTTGPAHWELLQRARAVDNQVYVATASPARDDKASYVAWGHSTVVDPWGQVLTKAG 236

Query: 321 HAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQLV 356
             E I+ ++ID   L   R  +P+ KQ+R DLY + 
Sbjct: 237 TEETILYSDIDLKKLAEIRQQIPILKQKRADLYTVE 272
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Length = 291 Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Length = 440 Back     alignment and structure
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Length = 281 Back     alignment and structure
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Length = 405 Back     alignment and structure
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262 Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283 Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303 Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Length = 334 Back     alignment and structure
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Length = 266 Back     alignment and structure
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Length = 341 Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Length = 590 Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634 Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680 Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Length = 565 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query364
2w1v_A276 Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A 100.0
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 100.0
1f89_A291 32.5 kDa protein YLR351C; nitrilase, dimer, struct 100.0
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 100.0
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 100.0
2e11_A266 Hydrolase; dimethylarsenic inhibi complex, cacodyl 100.0
1ems_A 440 Nitfhit, NIT-fragIle histidine triad fusion protei 100.0
2vhh_A405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 100.0
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 100.0
2dyu_A334 Formamidase; AMIF, CEK, catalytic triad, helicobac 100.0
2uxy_A341 Aliphatic amidase; nitrilase superfamily, hydrolas 100.0
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 100.0
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 100.0
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 100.0
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 100.0
3hkx_A 283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 80.2
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=2.9e-56  Score=417.98  Aligned_cols=272  Identities=55%  Similarity=0.949  Sum_probs=247.9

Q ss_pred             CceEEEEEecccccCHHHHHHHHHHHHHHHHHCCCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHHHHHHHc
Q 017888           81 AKFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLSEVARLL  160 (364)
Q Consensus        81 ~~~kIA~vQ~~v~~d~~~n~~~i~~~i~~A~~~gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~  160 (364)
                      ++||||++|+++.+|++.|++++.+++++|+++|+|||||||++++||...++..+++.+     .++..+.++++|+++
T Consensus         2 ~~~~va~vQ~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~-----~~~~~~~l~~~a~~~   76 (276)
T 2w1v_A            2 STFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKI-----PGESTQKLSEVAKES   76 (276)
T ss_dssp             CEEEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCSTTTHHHHCBCS-----SSHHHHHHHHHHHHH
T ss_pred             CccEEEEEeccccCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCCHHHHHHHhccC-----CCHHHHHHHHHHHHc
Confidence            469999999998899999999999999999999999999999999999876654444332     257999999999999


Q ss_pred             CcEEEEeeeeeecCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCeEEecCCeeEEEEEeccC
Q 017888          161 KITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDI  240 (364)
Q Consensus       161 ~i~Iv~Gs~~~~~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~vf~~~~~rigv~IC~D~  240 (364)
                      +++|++|++++++++++||++++|+++|+++++|+|+||++.++|.+..+.|..+|++|++..+|+++++|+|++||||.
T Consensus        77 ~~~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~vP~~e~~~E~~~f~~G~~~~v~~~~~~~ig~~ICyD~  156 (276)
T 2w1v_A           77 SIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDM  156 (276)
T ss_dssp             TSEEECCCEEEEETTEEEEEEEEECTTSCEEEEEECSSCCEEEETTTEEEEGGGTCCCCCCCCEEECSSCEEEECCGGGG
T ss_pred             CeEEEecceeecCCCcEEEEEEEECCCCcEEEEEecccccCcccCccccccccccccCCCCceeEEeCCceEEEEEEecc
Confidence            99999997777668899999999999999999999999976555766667899999999999999999999999999999


Q ss_pred             cccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCCCCEeEeCC
Q 017888          241 RFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLATTE  320 (364)
Q Consensus       241 ~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~G~il~~~~  320 (364)
                      +|||+++.++++|||+|++|++|+...+..+|..++++||+||++||++||++|..+++..++|.|+|++|+|+++++++
T Consensus       157 ~fpe~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~G~S~ii~p~G~v~~~~~  236 (276)
T 2w1v_A          157 RFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRARAVDNQVYVATASPARDDKASYVAWGHSTVVDPWGQVLTKAG  236 (276)
T ss_dssp             GCHHHHHHHHHTTEEEEEEECCCCTTHHHHHHHHHHHHHHHHHTCEEEEECCCCCTTSSSCCCCCCEEECTTSCEEEECC
T ss_pred             ccHHHHHHHHHcCCCEEEECCcCCCcCCHHHHHHHHHHHHHHcCcEEEEecccccCCCCceeeeEeEEECCCCCEeEEcC
Confidence            99999999999999999999998876667889999999999999999999999887778889999999999999999987


Q ss_pred             CCCcEEEEEEchhhHHHHHhcCCCccccccccchhhh
Q 017888          321 HAEDIIIAEIDYSILELRRTSLPLSKQRRGDLYQLVD  357 (364)
Q Consensus       321 ~~e~vl~~~ldl~~~~~~r~~~~~~~~~r~~ly~~~~  357 (364)
                      .+++++++++|++.++..|..+|++++|||++|++.+
T Consensus       237 ~~e~~l~~~id~~~~~~~R~~~~~~~~~r~~~y~~~~  273 (276)
T 2w1v_A          237 TEETILYSDIDLKKLAEIRQQIPILKQKRADLYTVES  273 (276)
T ss_dssp             SSSEEEEEEEEHHHHHHHHHHSCGGGSCCTTTEEEEE
T ss_pred             CCCeEEEEEEcHHHHHHHHHhCChhHhCCHHHhhccc
Confidence            7999999999999999999999999999999998654
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Back     alignment and structure
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Back     alignment and structure
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Back     alignment and structure
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Back     alignment and structure
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 364
d1emsa2271 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te 5e-50
d1uf5a_303 d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrol 2e-44
d1f89a_281 d.160.1.1 (A:) hypothetical protein yl85 {Baker's 1e-42
d1j31a_262 d.160.1.2 (A:) Hypothetical protein PH0642 {Archae 3e-42
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score =  166 bits (421), Expect = 5e-50
 Identities = 90/271 (33%), Positives = 139/271 (51%), Gaps = 8/271 (2%)

Query: 82  KFKVGLCQLSVTADKERNIAHARRAIEEAAEKGAKLILLPEIWNSPYSHDSFPVYAEDID 141
           +  + +CQ++   D E+N   A+  IE A EK  +++ LPE ++    + +  +      
Sbjct: 5   RHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMAT 64

Query: 142 AGGDASPSTAMLSEVARLLKITIVGGSIPERS---GDRLYNTCCVFGSDGKLIAKHRKIH 198
                        E+AR   I +  G +  +        +NT  +  SDG   A++ K+H
Sbjct: 65  DC----EYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLH 120

Query: 199 LFDIDIPGKITFIESKSLTAGETP-TIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLI 257
           LFD++IPGK+  +ES+   AG      VDT +GR+G+ ICYD+RF EL++    RGA L+
Sbjct: 121 LFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLL 180

Query: 258 CYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPFGEVLA 317
            +P AF + TG  HWE L RARA +NQ YV   +          ++GHS +V P+G V+A
Sbjct: 181 SFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYGHSMVVDPWGAVVA 240

Query: 318 TTEHAEDIIIAEIDYSILELRRTSLPLSKQR 348
                 D+  AEID S ++  R   P+   R
Sbjct: 241 QCSERVDMCFAEIDLSYVDTLREMQPVFSHR 271
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Length = 303 Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 281 Back     information, alignment and structure
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 262 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query364
d1f89a_281 hypothetical protein yl85 {Baker's yeast (Saccharo 100.0
d1j31a_262 Hypothetical protein PH0642 {Archaeon Pyrococcus h 100.0
d1uf5a_303 N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter 100.0
d1emsa2271 NIT-FHIT fusion protein, N-terminal domain {Nemato 100.0
d1f89a_ 281 hypothetical protein yl85 {Baker's yeast (Saccharo 81.63
d1uf5a_303 N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter 81.6
d1emsa2 271 NIT-FHIT fusion protein, N-terminal domain {Nemato 80.03
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-51  Score=380.46  Aligned_cols=271  Identities=51%  Similarity=0.852  Sum_probs=233.5

Q ss_pred             CCCCceEEEEEecccc-cCHHHHHHHHHHHHHHHHHC--CCcEEEcCCCCCCCCCCCCccchhhhhccCCCCchHHHHHH
Q 017888           78 PPVAKFKVGLCQLSVT-ADKERNIAHARRAIEEAAEK--GAKLILLPEIWNSPYSHDSFPVYAEDIDAGGDASPSTAMLS  154 (364)
Q Consensus        78 ~~~~~~kIA~vQ~~v~-~d~~~n~~~i~~~i~~A~~~--gadLvVfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~l~  154 (364)
                      .+.++||||++|+++. +|++.|++++++++++|+++  |+|||||||++++||...++......+. ....++.++.++
T Consensus         5 ~m~~~~kia~~Q~~~~~~D~~~N~~~~~~~i~~A~~~~~~a~lvv~PE~~l~gy~~~~~~~~~~~~~-~~~~~~~~~~l~   83 (281)
T d1f89a_           5 ILSQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSEVIN-PKEPSTSVQFLS   83 (281)
T ss_dssp             SBSSCEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSCHHHHHHHTTBCC-SSSCCHHHHHHH
T ss_pred             hhccCceEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEcCCcccCCCchhHHHHHHhhhc-ccCCCHHHHHHH
Confidence            4567799999999975 89999999999999999765  8999999999999998655433322211 223468999999


Q ss_pred             HHHHHcCcEEEEeeeeee--cCCeeEEEEEEEcCCCcEEEEeeccccCCCCCCCcccccccccccCCCCCeEEecCCeeE
Q 017888          155 EVARLLKITIVGGSIPER--SGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRI  232 (364)
Q Consensus       155 ~lA~~~~i~Iv~Gs~~~~--~~~~~yNsa~vi~~~G~i~~~y~K~~L~~~~~P~~~~~~E~~~~~~G~~~~vf~~~~~ri  232 (364)
                      ++|++++++|++|++++.  +++++||++++++++|+++..|+|.++++...+....+.|..+|.+|....+++++++|+
T Consensus        84 ~~A~~~~i~iv~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~~~k~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~  163 (281)
T d1f89a_          84 NLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKSTTIDTKYGKF  163 (281)
T ss_dssp             HHHHHSSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCCC----------HHHHSCCCCCCCEEEEETTEEE
T ss_pred             HHhhhcCceeecceeeeeccccCceeeecccccccccccccccccccccccccccccccccceeeeeccccccccccccc
Confidence            999999999999976654  467899999999999999999999999887655556677888899999999999999999


Q ss_pred             EEEEeccCcccHHHHHHHhCCceEEEEeCCCCCCCChhHHHHHHHHHHHhcCcEEEEecCCCCCCCCeeeeeEeEEECCC
Q 017888          233 GIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDEGAGYVAWGHSTLVGPF  312 (364)
Q Consensus       233 gv~IC~D~~fpe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~  312 (364)
                      |++||||+++|++++.++.+|++++++|+++.......+|+.++++||.||++||+.+|+.|+..++..++|+|+|++|+
T Consensus       164 g~~iC~d~~~p~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~~G~S~Ii~p~  243 (281)
T d1f89a_         164 GVGICYDMRFPELAMLSARKGAFAMIYPSAFNTVTGPLHWHLLARSRAVDNQVYVMLCSPARNLQSSYHAYGHSIVVDPR  243 (281)
T ss_dssp             EECCGGGGGCHHHHHHHHHTTEEEEEEECCCBTTHHHHHHHHHHHHHHHHHTSEEEEECCCCCTTSSSCBCCCCEEECTT
T ss_pred             ccccccccccccchhhhhcccccceeEeeccccccccccccchhhhhcccccccceeeeecccCCCCcEeeeceEEEcCC
Confidence            99999999999999999999999999999877665566788889999999999999999999888889999999999999


Q ss_pred             CCEeEeCCCCCcEEEEEEchhhHHHHHhcCCCccccc
Q 017888          313 GEVLATTEHAEDIIIAEIDYSILELRRTSLPLSKQRR  349 (364)
Q Consensus       313 G~il~~~~~~e~vl~~~ldl~~~~~~r~~~~~~~~~r  349 (364)
                      |+++++++.+|++++++||+++++..|++||+++|||
T Consensus       244 G~vl~~~~~~e~v~~adidl~~~~~~R~~~~~~~~rr  280 (281)
T d1f89a_         244 GKIVAEAGEGEEIIYAELDPEVIESFRQAVPLTKQRR  280 (281)
T ss_dssp             SCEEEECCSSSEEEEEEECHHHHHHHHHHSCCCCCCC
T ss_pred             CCEEEECCCCCeEEEEEEcHHHHHHHHHhCchhhhCC
Confidence            9999999878899999999999999999999999998
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure