Citrus Sinensis ID: 017890
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 364 | 2.2.26 [Sep-21-2011] | |||||||
| Q54M22 | 441 | 2-oxoisovalerate dehydrog | yes | no | 0.692 | 0.571 | 0.541 | 6e-82 | |
| O45924 | 431 | 2-oxoisovalerate dehydrog | yes | no | 0.741 | 0.626 | 0.522 | 8e-82 | |
| Q8HXY4 | 445 | 2-oxoisovalerate dehydrog | N/A | no | 0.818 | 0.669 | 0.479 | 7e-80 | |
| P12694 | 445 | 2-oxoisovalerate dehydrog | yes | no | 0.804 | 0.658 | 0.485 | 1e-79 | |
| A5A6H9 | 445 | 2-oxoisovalerate dehydrog | yes | no | 0.804 | 0.658 | 0.485 | 1e-79 | |
| P11960 | 441 | 2-oxoisovalerate dehydrog | yes | no | 0.807 | 0.666 | 0.477 | 2e-79 | |
| P50136 | 442 | 2-oxoisovalerate dehydrog | yes | no | 0.769 | 0.633 | 0.491 | 5e-79 | |
| P11178 | 455 | 2-oxoisovalerate dehydrog | yes | no | 0.755 | 0.604 | 0.494 | 3e-78 | |
| P37940 | 330 | 2-oxoisovalerate dehydrog | yes | no | 0.637 | 0.703 | 0.410 | 3e-45 | |
| Q72GU1 | 367 | 2-oxoisovalerate dehydrog | yes | no | 0.711 | 0.705 | 0.400 | 1e-44 |
| >sp|Q54M22|ODBA_DICDI 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 304 bits (779), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 137/253 (54%), Positives = 180/253 (71%), Gaps = 1/253 (0%)
Query: 106 VPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTI 165
+PC+ ++D G + K SKE +KMY+ M+TL VMDS+LY+ QRQGR SFY+T+
Sbjct: 64 IPCYTIMDQEGVVSKPDQDPNFSKEEVIKMYTTMLTLNVMDSILYDVQRQGRISFYMTSF 123
Query: 166 GEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHY 225
GEEAI+IGSAAAL D I QYRE GV +WRG+T+ NQ N+ D GKGRQMP+H+
Sbjct: 124 GEEAIHIGSAAALEMSDTIFAQYRETGVFMWRGFTINDIINQCCTNEHDLGKGRQMPMHF 183
Query: 226 GSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAV 285
GS+K+N TISSP+ TQLPQAVG +Y+ K+ + C + Y G+G SEGDFHAA+NFAA
Sbjct: 184 GSRKINLQTISSPLTTQLPQAVGSSYAQKLAGEKNCTIVYFGEGAASEGDFHAAMNFAAA 243
Query: 286 MEAPVVFICRNNGWAISTNISEQFRSDGIVVKG-RAYGIRSIRVDGNDALAVYTAVQAAR 344
+ P +F CRNN WAIST EQ++ DGI +G YG+++IRVDGND AVY + AR
Sbjct: 244 LSTPTIFFCRNNKWAISTPSKEQYKGDGIAGRGPNGYGMKTIRVDGNDIWAVYNVTKLAR 303
Query: 345 EMAISEKRPVLVE 357
++A+ E+ PVL+E
Sbjct: 304 KIAVEEQVPVLIE 316
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Dictyostelium discoideum (taxid: 44689) EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 4 |
| >sp|O45924|ODBA_CAEEL 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=Y39E4A.3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 304 bits (778), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 142/272 (52%), Positives = 189/272 (69%), Gaps = 2/272 (0%)
Query: 88 KVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDS 147
K +T ++ + +P +RV + G++I S ++ ++KMY M L +MD
Sbjct: 41 KAAFTEKLEIVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDR 100
Query: 148 VLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQ 207
+LY++QRQGR SFY+T+ GEE ++GSAAAL D I QYRE GVLLWRGYT++ F NQ
Sbjct: 101 ILYDSQRQGRISFYMTSFGEEGNHVGSAAALEPQDLIYGQYREAGVLLWRGYTMENFMNQ 160
Query: 208 VFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK-KDACAVAYT 266
+ N D GKGRQMP+H+G+K+ N++TISSP+ TQLPQAVG AY+ K +K + AV Y
Sbjct: 161 CYGNADDLGKGRQMPMHFGTKERNFVTISSPLTTQLPQAVGSAYAFKQQKDNNRIAVVYF 220
Query: 267 GDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSI 326
GDG SEGD HAA NFAA ++ P++F CRNNG+AIST SEQ+ DGI KG AYG+ +I
Sbjct: 221 GDGAASEGDAHAAFNFAATLKCPIIFFCRNNGYAISTPTSEQYGGDGIAGKGPAYGLHTI 280
Query: 327 RVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358
RVDGND LAVY A + AR +A++ RPVL+E
Sbjct: 281 RVDGNDLLAVYNATKEARRVALT-NRPVLIEA 311
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). Required for the production of the monomethyl branched-chain fatty acids (mmBCFAs) isopentadecanoate (C15iso) and isoheptadecanoate (C17iso). Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q8HXY4|ODBA_MACFA 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 297 bits (761), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 149/311 (47%), Positives = 196/311 (63%), Gaps = 13/311 (4%)
Query: 52 LFSPG-----RSESTVAANQLDSLSSSDSDDDHQVLDFPGGKVGYTSEMRFIPESSEKRV 106
L+ PG RS Q SL DD Q FPG + ++ FI + +
Sbjct: 25 LWRPGARGLARSHPHRQQQQFSSL-----DDKPQ---FPGASAEFIDKLEFIQPNVISGI 76
Query: 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIG 166
P +RV+D G++I S+ + KE +K+Y M L MD +LYE+QRQGR SFY+T G
Sbjct: 77 PIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYG 136
Query: 167 EEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYG 226
EE ++GSAAAL D + QYRE GVL++R Y L+ F Q + N +D GKGRQMP+HYG
Sbjct: 137 EEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYG 196
Query: 227 SKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM 286
K+ +++TISSP+ATQ+PQAVG AY+ K + + Y G+G SEGD HA NFAA +
Sbjct: 197 CKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATL 256
Query: 287 EAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREM 346
E P++F CRNNG+AIST SEQ+R DGI +G YGI SIRVDGND AVY A + AR
Sbjct: 257 ECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRR 316
Query: 347 AISEKRPVLVE 357
A++E +P L+E
Sbjct: 317 AVAENQPFLIE 327
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Macaca fascicularis (taxid: 9541) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|P12694|ODBA_HUMAN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 296 bits (759), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/301 (48%), Positives = 192/301 (63%), Gaps = 8/301 (2%)
Query: 57 RSESTVAANQLDSLSSSDSDDDHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNG 116
RS Q SL DD Q FPG + ++ FI + +P +RV+D G
Sbjct: 35 RSHPPRQQQQFSSL-----DDKPQ---FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQG 86
Query: 117 ELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAA 176
++I S+ + KE +K+Y M L MD +LYE+QRQGR SFY+T GEE ++GSAA
Sbjct: 87 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAA 146
Query: 177 ALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITIS 236
AL D + QYRE GVL++R Y L+ F Q + N +D GKGRQMP+HYG K+ +++TIS
Sbjct: 147 ALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTIS 206
Query: 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRN 296
SP+ATQ+PQAVG AY+ K + + Y G+G SEGD HA NFAA +E P++F CRN
Sbjct: 207 SPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRN 266
Query: 297 NGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356
NG+AIST SEQ+R DGI +G YGI SIRVDGND AVY A + AR A++E +P L+
Sbjct: 267 NGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLI 326
Query: 357 E 357
E
Sbjct: 327 E 327
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|A5A6H9|ODBA_PANTR 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (759), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/301 (48%), Positives = 192/301 (63%), Gaps = 8/301 (2%)
Query: 57 RSESTVAANQLDSLSSSDSDDDHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNG 116
RS Q SL DD Q FPG + ++ FI + +P +RV+D G
Sbjct: 35 RSHPRRQQQQFSSL-----DDKPQ---FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQG 86
Query: 117 ELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAA 176
++I S+ + KE +K+Y M L MD +LYE+QRQGR SFY+T GEE ++GSAA
Sbjct: 87 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAA 146
Query: 177 ALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITIS 236
AL D + QYRE GVL++R Y L+ F Q + N +D GKGRQMP+HYG K+ +++TIS
Sbjct: 147 ALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTIS 206
Query: 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRN 296
SP+ATQ+PQAVG AY+ K + + Y G+G SEGD HA NFAA +E P++F CRN
Sbjct: 207 SPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRN 266
Query: 297 NGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356
NG+AIST SEQ+R DGI +G YGI SIRVDGND AVY A + AR A++E +P L+
Sbjct: 267 NGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLI 326
Query: 357 E 357
E
Sbjct: 327 E 327
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Pan troglodytes (taxid: 9598) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|P11960|ODBA_RAT 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (757), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/306 (47%), Positives = 194/306 (63%), Gaps = 12/306 (3%)
Query: 53 FSPGRSESTVAANQLDSLSSSDSDDDHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVL 112
F P R + Q SL DD Q FPG + ++ FI + +P +RV+
Sbjct: 31 FHPSRQQQ----QQFPSL-----DDKPQ---FPGASAEFVDKLEFIQPNVISGIPIYRVM 78
Query: 113 DDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINI 172
D G++I S+ + +E +K+Y M L MD +LYE+QRQGR SFY+T GEE ++
Sbjct: 79 DRQGQIINPSEDPHLPQEEVLKLYRSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHV 138
Query: 173 GSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNY 232
GSAAAL D + QYRE GVL++R Y L+ F Q + N +D GKGRQMP+HYG K+ ++
Sbjct: 139 GSAAALERTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSDPGKGRQMPVHYGCKERHF 198
Query: 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVF 292
+TISSP+ATQ+PQAVG AY+ K + + Y G+G SEGD HA NFAA +E P++F
Sbjct: 199 VTISSPLATQIPQAVGAAYAAKRANANQIVICYFGEGAASEGDAHAGFNFAATLECPIIF 258
Query: 293 ICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKR 352
CRNNG+AIST SEQ+R DGI +G YGI SIRVDGND AVY A + AR A++E +
Sbjct: 259 FCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQ 318
Query: 353 PVLVEV 358
P L+E
Sbjct: 319 PFLIEA 324
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|P50136|ODBA_MOUSE 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (754), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 139/283 (49%), Positives = 187/283 (66%), Gaps = 3/283 (1%)
Query: 76 DDDHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKM 135
DD Q FPG + ++ FI + +P +RV+D G++I S+ + +E +K
Sbjct: 46 DDKPQ---FPGASAEFVDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKF 102
Query: 136 YSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLL 195
Y M L MD +LYE+QR+GR SFY+T GEE ++GSAAAL D + QYRE GVL+
Sbjct: 103 YRSMTLLNTMDRILYESQREGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLM 162
Query: 196 WRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKM 255
+R Y L+ F +Q + N D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K
Sbjct: 163 YRDYPLELFMSQCYGNVNDPGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKR 222
Query: 256 EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIV 315
+ + Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI
Sbjct: 223 ANANRIVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIA 282
Query: 316 VKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358
+G YGI+SIRVDGND AVY A + AR A++E +P L+E
Sbjct: 283 ARGPGYGIKSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 325
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Mus musculus (taxid: 10090) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|P11178|ODBA_BOVIN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 136/275 (49%), Positives = 183/275 (66%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + +E +K Y M L
Sbjct: 64 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLN 123
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 124 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDDTDLVFGQYREAGVLMYRDYPLEL 183
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG ++ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 184 FMAQCYGNVSDLGKGRQMPVHYGCRERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 243
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 244 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 303
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358
SIRVDGND AVY A + AR A++E +P L+E
Sbjct: 304 LSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 338
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Bos taurus (taxid: 9913) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|P37940|ODBA_BACSU 2-oxoisovalerate dehydrogenase subunit alpha OS=Bacillus subtilis (strain 168) GN=bfmBAA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 141/234 (60%), Gaps = 2/234 (0%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSAD-DFIL 185
++ + AV MY M+ + +D ++ R G+ F ++ G+EA +G+A AL + D++L
Sbjct: 11 LTDQEAVDMYRTMLLARKIDERMWLLNRSGKIPFVISCQGQEAAQVGAAFALDREMDYVL 70
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKAD-DGKGRQMPIHYGSKKLNYITISSPIATQLP 244
P YR+ GV+L G T + FA AD + GRQMP H+G KK +T SSP+ TQ+P
Sbjct: 71 PYYRDMGVVLAFGMTAKDLMMSGFAKAADPNSGGRQMPGHFGQKKNRIVTGSSPVTTQVP 130
Query: 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTN 304
AVG+A + +MEKKD A G+G +++GDFH NFAAV + PV+F+C NN +AIS
Sbjct: 131 HAVGIALAGRMEKKDIAAFVTFGEGSSNQGDFHEGANFAAVHKLPVIFMCENNKYAISVP 190
Query: 305 ISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358
+Q + I + YG+ + V+GND L VY AV+ ARE A + P L+E
Sbjct: 191 YDKQVACENISDRAIGYGMPGVTVNGNDPLEVYQAVKEARERARRGEGPTLIET 244
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q72GU1|ODBA_THET2 2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1757 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/267 (40%), Positives = 148/267 (55%), Gaps = 8/267 (2%)
Query: 96 RFIPESSEKRVPCFRVLDDNGELIKGSDFQ-QVSKEVAVKMYSHMVTLQVMDSVLYEAQR 154
RF P + E R++ + GE + DF + E ++Y M+ +++D R
Sbjct: 7 RFEPFTEEP----IRLIGEEGEWL--GDFPLDLEGEKLRRLYRDMLAARMLDERYTILIR 60
Query: 155 QGRFSFYLTTIGEEAINIGSAAALSAD-DFILPQYREPGVLLWRGYTLQQFANQVFANKA 213
G+ SF G EA + A A+ D++ P YR+ G+ L G L++ Q+ A KA
Sbjct: 61 TGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELFGQMLATKA 120
Query: 214 DDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 273
D KGRQMP H GSK LN+ T++SPIA+ +P A G A S+K+ + AV GDG TSE
Sbjct: 121 DPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSE 180
Query: 274 GDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDA 333
GD++A +NFAAV AP VF+C NN +AIS + Q S I K A+GI VDG D
Sbjct: 181 GDWYAGINFAAVQGAPAVFVCENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDV 240
Query: 334 LAVYTAVQAAREMAISEKRPVLVEVRL 360
LA Y V+ A E A + P LVE+R+
Sbjct: 241 LASYYVVKEAVERARRGEGPSLVELRV 267
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (taxid: 262724) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 364 | ||||||
| 312281515 | 471 | unnamed protein product [Thellungiella h | 0.967 | 0.747 | 0.688 | 1e-142 | |
| 15218984 | 472 | 2-oxoisovalerate dehydrogenase E1 compon | 0.978 | 0.754 | 0.678 | 1e-141 | |
| 297845120 | 472 | hypothetical protein ARALYDRAFT_313033 [ | 0.972 | 0.75 | 0.692 | 1e-141 | |
| 3822223 | 472 | branched-chain alpha keto-acid dehydroge | 0.975 | 0.752 | 0.662 | 1e-135 | |
| 356509346 | 478 | PREDICTED: 2-oxoisovalerate dehydrogenas | 0.898 | 0.684 | 0.711 | 1e-134 | |
| 356515957 | 487 | PREDICTED: 2-oxoisovalerate dehydrogenas | 0.898 | 0.671 | 0.703 | 1e-133 | |
| 225431715 | 481 | PREDICTED: 2-oxoisovalerate dehydrogenas | 0.969 | 0.733 | 0.643 | 1e-133 | |
| 225457857 | 471 | PREDICTED: 2-oxoisovalerate dehydrogenas | 0.953 | 0.736 | 0.659 | 1e-131 | |
| 297811017 | 472 | hypothetical protein ARALYDRAFT_350155 [ | 0.799 | 0.616 | 0.752 | 1e-131 | |
| 413916414 | 392 | hypothetical protein ZEAMMB73_816012 [Ze | 0.771 | 0.716 | 0.754 | 1e-130 |
| >gi|312281515|dbj|BAJ33623.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust.
Identities = 247/359 (68%), Positives = 289/359 (80%), Gaps = 7/359 (1%)
Query: 1 MAIWLTKSRAMAQCLRQRVGLLRILSGQSCSSPSTIFPLQQYNSPSL--PSKTLFSPGRS 58
MAIW +SR + LRQ +G +IL + S +F Q +S P K+L R
Sbjct: 1 MAIWFARSRNIVSSLRQNLGSSKILFKRDYSH-RPVFKNSQLSSTVFLGPVKSL----RH 55
Query: 59 ESTVAANQLDSLSSSDSDDDHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGEL 118
EST Q D + SD +D LDFPGGKVGYTSEM+FIPESS +R+PC+RVLD++G +
Sbjct: 56 ESTAVEKQPDLVQLSDEEDAQLELDFPGGKVGYTSEMKFIPESSSRRIPCYRVLDEDGRI 115
Query: 119 IKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAAL 178
I SDF VS+++AV+MY M TLQVMD + YEAQRQGR SFYLT++GEEAINI SAAAL
Sbjct: 116 IPDSDFIPVSEKLAVRMYEQMATLQVMDHIFYEAQRQGRISFYLTSVGEEAINIASAAAL 175
Query: 179 SADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSP 238
S+DD +LPQYREPGVLLWRG+TL++FANQ F NKAD GKGRQMPIHYGS + NY T+SSP
Sbjct: 176 SSDDVVLPQYREPGVLLWRGFTLEEFANQCFGNKADYGKGRQMPIHYGSNRHNYFTVSSP 235
Query: 239 IATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298
IATQLPQA GV YSLKMEKK+ACAV + GDGGTSEGDFHA LNFAAVMEAPVVFICRNNG
Sbjct: 236 IATQLPQAAGVGYSLKMEKKNACAVTFIGDGGTSEGDFHAGLNFAAVMEAPVVFICRNNG 295
Query: 299 WAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357
WAIST+ISEQFRSDGIVVKG+AYGIRSIRVDGNDALAVY+AV++AREMA++E+RPVL+E
Sbjct: 296 WAISTHISEQFRSDGIVVKGQAYGIRSIRVDGNDALAVYSAVRSAREMAVTEQRPVLIE 354
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15218984|ref|NP_173562.1| 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [Arabidopsis thaliana] gi|9454571|gb|AAF87894.1|AC015447_4 branched-chain alpha keto-acid dehydrogenase E1 - alpha subunit [Arabidopsis thaliana] gi|20466298|gb|AAM20466.1| branched-chain alpha keto-acid dehydrogenase, putative [Arabidopsis thaliana] gi|23198122|gb|AAN15588.1| branched-chain alpha keto-acid dehydrogenase, putative [Arabidopsis thaliana] gi|332191978|gb|AEE30099.1| 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/358 (67%), Positives = 284/358 (79%), Gaps = 2/358 (0%)
Query: 1 MAIWLTKSRAMAQCLRQRVGLLRILSGQSCSSPSTIFPLQQYNSPSLPSKTLFSPGRSES 60
MAIW +S+ + LR + L IL + S + Q +S + S F R ES
Sbjct: 1 MAIWFARSKTLVSSLRHNLNLSTILIKRDYSHRPIFYTTSQLSSTAYLSP--FGSLRHES 58
Query: 61 TVAANQLDSLSSSDSDDDHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIK 120
T Q D L + D Q LDFPGGKVGYTSEM+FIPESS +R+PC+RVLD++G +I
Sbjct: 59 TAVETQADHLVQQIDEVDAQELDFPGGKVGYTSEMKFIPESSSRRIPCYRVLDEDGRIIP 118
Query: 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSA 180
SDF VS+++AV+MY M TLQVMD + YEAQRQGR SFYLT++GEEAINI SAAALS
Sbjct: 119 DSDFIPVSEKLAVRMYEQMATLQVMDHIFYEAQRQGRISFYLTSVGEEAINIASAAALSP 178
Query: 181 DDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIA 240
DD +LPQYREPGVLLWRG+TL++FANQ F NKAD GKGRQMPIHYGS +LNY TISSPIA
Sbjct: 179 DDVVLPQYREPGVLLWRGFTLEEFANQCFGNKADYGKGRQMPIHYGSNRLNYFTISSPIA 238
Query: 241 TQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA 300
TQLPQA GV YSLKM+KK+AC V + GDGGTSEGDFHA LNFAAVMEAPVVFICRNNGWA
Sbjct: 239 TQLPQAAGVGYSLKMDKKNACTVTFIGDGGTSEGDFHAGLNFAAVMEAPVVFICRNNGWA 298
Query: 301 ISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358
IST+ISEQFRSDGIVVKG+AYGIRSIRVDGNDALAVY+AV++AREMA++E+RPVL+E+
Sbjct: 299 ISTHISEQFRSDGIVVKGQAYGIRSIRVDGNDALAVYSAVRSAREMAVTEQRPVLIEM 356
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297845120|ref|XP_002890441.1| hypothetical protein ARALYDRAFT_313033 [Arabidopsis lyrata subsp. lyrata] gi|297336283|gb|EFH66700.1| hypothetical protein ARALYDRAFT_313033 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 248/358 (69%), Positives = 286/358 (79%), Gaps = 4/358 (1%)
Query: 1 MAIWLTKSRAMAQCLRQRVGLLRILSGQSCS-SPSTIFPLQQYNSPSLPSKTLFSPGRSE 59
MAIW +S+ + LR + L IL+ C SP IF S + + R E
Sbjct: 1 MAIWFARSKNLVSSLRHNLNLSAILN--KCDYSPRPIFFSTTSQLSSTSFLSPVASLRHE 58
Query: 60 STVAANQLDSLSSSDSDDDHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELI 119
ST Q D L D +DD Q LDFPGGKVGYTSEM+FIPESS +R+PC+RVLD++G +I
Sbjct: 59 STAVETQPDHLVQID-EDDGQELDFPGGKVGYTSEMKFIPESSSRRIPCYRVLDEDGRII 117
Query: 120 KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS 179
SDF VS+++AV+MY M TLQVMD + YEAQRQGR SFYLT++GEEAINI SAAALS
Sbjct: 118 PDSDFIPVSEKLAVRMYEQMATLQVMDHIFYEAQRQGRISFYLTSVGEEAINIASAAALS 177
Query: 180 ADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPI 239
DD +LPQYREPGVLLWRG+TL++FANQ F NKAD GKGRQMPIHYGS +LNY TISSPI
Sbjct: 178 PDDVVLPQYREPGVLLWRGFTLEEFANQCFGNKADYGKGRQMPIHYGSNRLNYFTISSPI 237
Query: 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW 299
ATQLPQA GV YSLKM+KK+ACAV + GDGGTSEGDFHA LNFAAVMEAPVVFICRNNGW
Sbjct: 238 ATQLPQAAGVGYSLKMDKKNACAVTFIGDGGTSEGDFHAGLNFAAVMEAPVVFICRNNGW 297
Query: 300 AISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357
AIST+ISEQFRSDGIVVKG+AYGIRSIRVDGNDALAVYTAV++AREMA++E+RPVL+E
Sbjct: 298 AISTHISEQFRSDGIVVKGQAYGIRSIRVDGNDALAVYTAVRSAREMAVTEQRPVLIE 355
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3822223|gb|AAC69851.1| branched-chain alpha keto-acid dehydrogenase E1 alpha subunit [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/358 (66%), Positives = 278/358 (77%), Gaps = 3/358 (0%)
Query: 2 AIWLTKSRAMAQCLRQRVGLLRILSGQSCSSPSTIFPLQQYNSPSLPSKTLFSPGRSEST 61
AIW +S+ + LR + L IL + S + Q +S + S F R EST
Sbjct: 1 AIWFARSKTLVSSLRHNLNLSTILIKRDYSHRPIFYTTSQLSSTAYLSP--FGSLRHEST 58
Query: 62 VAANQLDSLSSSDSDDDHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKG 121
Q D L + D Q LDFPGGKVGYTSEM+FIPESS +R+PC+RVLD++G +I
Sbjct: 59 AVETQADHLVQQIDEVDAQELDFPGGKVGYTSEMKFIPESSSRRIPCYRVLDEDGRIIPD 118
Query: 122 SDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSAD 181
SDF VS+++AV+MY M TLQVMD + YEAQRQGR SFYLT++GEEAINI SAAALS D
Sbjct: 119 SDFIPVSEKLAVRMYEQMATLQVMDHIFYEAQRQGRISFYLTSVGEEAINIASAAALSPD 178
Query: 182 DFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIAT 241
D +LPQYREPGVLLWRG+TL++FANQ F NKAD GKGRQMPIHYGS +LNY TISSPIAT
Sbjct: 179 DVVLPQYREPGVLLWRGFTLEEFANQCFGNKADYGKGRQMPIHYGSNRLNYFTISSPIAT 238
Query: 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI 301
QLPQA GV YSLKM+KK+AC V + GDGGTSEGDFHA LNFAAVMEAPVVFICRNNGWAI
Sbjct: 239 QLPQAAGVGYSLKMDKKNACTVTFIGDGGTSEGDFHAGLNFAAVMEAPVVFICRNNGWAI 298
Query: 302 STNISEQFRSDGIVVKGRAYGIRSIRV-DGNDALAVYTAVQAAREMAISEKRPVLVEV 358
ST+ISEQFRSDGIVVKG+AYGI V DG DALAVY+AV++AREMA++E+RPVL+E+
Sbjct: 299 STHISEQFRSDGIVVKGQAYGIPKHPVWDGTDALAVYSAVRSAREMAVTEQRPVLIEM 356
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509346|ref|XP_003523411.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/333 (71%), Positives = 266/333 (79%), Gaps = 6/333 (1%)
Query: 29 SCSSPSTIFPLQQYNSPSLPSK----TLFSPGRSESTVAANQLDSLSSSDSDDDHQVLDF 84
SCSS + P + ++ LP K TLF R EST A QL+ DD Q++DF
Sbjct: 31 SCSSFRSTEPFRCRDA--LPGKNSSPTLFRFWRHESTKAEAQLELEQDVTEDDPKQIIDF 88
Query: 85 PGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQV 144
PGGKVG+TSEMRFI ES +KRVPC+RVLD NGE++K SD+ QV KE+ VKMYS MVTLQ
Sbjct: 89 PGGKVGFTSEMRFISESPQKRVPCYRVLDGNGEILKYSDYVQVGKEMGVKMYSDMVTLQT 148
Query: 145 MDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQF 204
MDS+ YE QRQGR SFYLT +GEEA+NI SAAALS DD ILPQYREPGVLLWRG+TLQQF
Sbjct: 149 MDSIFYEVQRQGRISFYLTQMGEEAVNIASAAALSPDDIILPQYREPGVLLWRGFTLQQF 208
Query: 205 ANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVA 264
+Q F N D GKGRQMPIHYGS K NY T+SSPIATQLPQAVG AYSLKM+ K ACAV
Sbjct: 209 VHQCFGNTHDFGKGRQMPIHYGSNKHNYFTVSSPIATQLPQAVGAAYSLKMDGKSACAVT 268
Query: 265 YTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324
+ GDG TSEGDFHAA+NFAAVMEAPVVFICRNNGWAIST + +QFRSDGIVVKG+AYGI
Sbjct: 269 FCGDGATSEGDFHAAMNFAAVMEAPVVFICRNNGWAISTPVEDQFRSDGIVVKGKAYGIW 328
Query: 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357
SIRVDGNDALAVY+AV ARE+AI EKRPVL+E
Sbjct: 329 SIRVDGNDALAVYSAVHTAREIAIREKRPVLIE 361
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515957|ref|XP_003526663.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 235/334 (70%), Positives = 269/334 (80%), Gaps = 7/334 (2%)
Query: 29 SCSSPSTIFPLQQYNSPSLPSK----TLFSPGRSESTVAANQLD-SLSSSDSDDDHQVLD 83
SCSS + P + ++ P K TLF R EST A QL+ + D+ +QV+D
Sbjct: 39 SCSSFPSTEPFRCRDA--FPGKNSSPTLFRFSRHESTKAEAQLELEQDVATEDEPNQVID 96
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPGGKVG+TSEMRFI ES EKRVPC+RVLDDNGE++K S++ QVSKE+ VKMYS MVTLQ
Sbjct: 97 FPGGKVGFTSEMRFISESPEKRVPCYRVLDDNGEIVKYSNYVQVSKEMGVKMYSDMVTLQ 156
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD++ YE QRQGR SFYLT +GEEA+NI SAAAL+ DD ILPQYREPGVLLWRG+TLQQ
Sbjct: 157 TMDNIFYEVQRQGRISFYLTQMGEEAVNIASAAALAPDDIILPQYREPGVLLWRGFTLQQ 216
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F +Q F N D GKGRQMPIHYGS + NY T+SSPIATQLPQAVG AYSLKM+ K ACAV
Sbjct: 217 FVHQCFGNTHDFGKGRQMPIHYGSNQHNYFTVSSPIATQLPQAVGAAYSLKMDGKSACAV 276
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
+ GDG TSEGDFHAA+NFAAVMEAPVVFICRNNGWAIST + +QFRSDGIVVKG+AYGI
Sbjct: 277 TFCGDGATSEGDFHAAMNFAAVMEAPVVFICRNNGWAISTPVEDQFRSDGIVVKGKAYGI 336
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357
SIRVDGNDALAVY+AV ARE+AI EKRPVL+E
Sbjct: 337 WSIRVDGNDALAVYSAVHTAREIAIKEKRPVLIE 370
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431715|ref|XP_002265166.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial [Vitis vinifera] gi|296088533|emb|CBI37524.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/367 (64%), Positives = 289/367 (78%), Gaps = 14/367 (3%)
Query: 1 MAIWLTKSRAMAQCLRQRVGLLRILSGQSCS------SPSTIFPL----QQYNSPSLPSK 50
MA+ L KS+ + QCL+ ++ ++ + S PS++ PL + ++ + +
Sbjct: 1 MALPLGKSKRILQCLKSKICVVGLGKNSFWSGWFHHGCPSSMAPLAPTCRNPDAVLVNAA 60
Query: 51 TLFSPGRSESTVAANQLDSLSSSDSDDDHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFR 110
T F+ R EST A +DSL ++ + Q+LDFPGGKV +TSEMRFIPES +R C+R
Sbjct: 61 TQFATRRFESTKAEKHVDSLCDAEGN---QLLDFPGGKVAFTSEMRFIPESPMERAHCYR 117
Query: 111 VLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAI 170
VLDDNG+ S+F QVSKEVAVKMY+ M+TLQVMD++ YEAQRQGR SFY+T+IGEEAI
Sbjct: 118 VLDDNGQP-NMSNFVQVSKEVAVKMYATMLTLQVMDTIFYEAQRQGRISFYVTSIGEEAI 176
Query: 171 NIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKL 230
N+ SAAALS DD I PQYREPGVLLWRG+TLQ+FANQ F NKAD GKGRQMPIHYGS K
Sbjct: 177 NVASAAALSIDDVIFPQYREPGVLLWRGFTLQEFANQCFGNKADYGKGRQMPIHYGSNKH 236
Query: 231 NYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPV 290
NY+T+SS +ATQ+PQAVG AYSLKM+ KDAC V Y GDGG+S GDFHAALNFAAVMEAPV
Sbjct: 237 NYVTVSSTVATQIPQAVGAAYSLKMDGKDACTVTYFGDGGSSTGDFHAALNFAAVMEAPV 296
Query: 291 VFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISE 350
+FICRNNGWAIST +S+QFRSDG+VV+GR YG+RSIRVDGNDALA+YTAV AAR+MAI+E
Sbjct: 297 IFICRNNGWAISTPVSDQFRSDGVVVRGRGYGVRSIRVDGNDALAMYTAVHAARKMAITE 356
Query: 351 KRPVLVE 357
RP+L+E
Sbjct: 357 HRPILIE 363
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457857|ref|XP_002268860.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial [Vitis vinifera] gi|302142724|emb|CBI19927.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/364 (65%), Positives = 287/364 (78%), Gaps = 17/364 (4%)
Query: 1 MAIWLTKSRAMAQCLRQRVG-LLR---ILSGQSCS-SPSTIFPLQQYNSPSLPSKTLFSP 55
MA W T+S +A +++ +G LR LS S S SP+ + NSP+L
Sbjct: 1 MAAWFTRSGNIAHHVKRNMGSFLRPAPTLSDSSWSRSPACLG-----NSPAL-----LWA 50
Query: 56 GRSESTVAANQLDSLSSSDSD--DDHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLD 113
GR EST A +DS S +D+ DD Q +DFPGG+V TSEM+FIP ++RV C+ +++
Sbjct: 51 GRLESTRAQKLVDSDSENDAPLRDDDQAIDFPGGRVMLTSEMQFIPGYPQQRVHCYHLMN 110
Query: 114 DNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIG 173
++G+ S F+QVSKEVAVKMYS M+TLQ+MD++ YEAQRQGR SFYLT++GEEAINI
Sbjct: 111 NDGQTNMCSSFEQVSKEVAVKMYSDMITLQIMDTIFYEAQRQGRISFYLTSVGEEAINIA 170
Query: 174 SAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYI 233
SAAALS DD ++ QYREPGVLLWRG+TLQ+FANQ F NKAD GKGRQMPIHYGSKKLNY
Sbjct: 171 SAAALSPDDIVMAQYREPGVLLWRGFTLQEFANQCFGNKADCGKGRQMPIHYGSKKLNYF 230
Query: 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFI 293
T+SSP+ATQLPQAVG AYSLKM+ KDAC VAY GDG TSEGDFHA+LNFAAVMEAPV+F+
Sbjct: 231 TVSSPLATQLPQAVGAAYSLKMDNKDACVVAYFGDGSTSEGDFHASLNFAAVMEAPVIFL 290
Query: 294 CRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRP 353
CRNNGWAIST SEQFRSDGIVVKG AYGI+SIRVDGNDALAV+ AV+AAR+MAI E+RP
Sbjct: 291 CRNNGWAISTPTSEQFRSDGIVVKGPAYGIQSIRVDGNDALAVHNAVRAARQMAIHEQRP 350
Query: 354 VLVE 357
+LVE
Sbjct: 351 ILVE 354
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811017|ref|XP_002873392.1| hypothetical protein ARALYDRAFT_350155 [Arabidopsis lyrata subsp. lyrata] gi|297319229|gb|EFH49651.1| hypothetical protein ARALYDRAFT_350155 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust.
Identities = 219/291 (75%), Positives = 249/291 (85%)
Query: 67 LDSLSSSDSDDDHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQ 126
L S + +HQV+DFPGGKV +T E+RFI ES +RVPC+RVLDDNG+LI S F Q
Sbjct: 65 LSSFGQHEDARNHQVMDFPGGKVAFTPEIRFISESDSERVPCYRVLDDNGQLITNSQFVQ 124
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILP 186
VS+EVAVK+YS MVTLQ+MD++ YEAQRQGR SFY T IGEEAINI SAAAL+ D I P
Sbjct: 125 VSEEVAVKIYSDMVTLQIMDNIFYEAQRQGRLSFYATAIGEEAINIASAAALTPQDVIFP 184
Query: 187 QYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQA 246
QYREPGVLLWRG+TLQ+FANQ F NK+D GKGRQMP+HYGS KLNY T+S+ IATQLP A
Sbjct: 185 QYREPGVLLWRGFTLQEFANQCFGNKSDYGKGRQMPVHYGSNKLNYFTVSATIATQLPNA 244
Query: 247 VGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS 306
VG AYSLKM++KDACAV Y GDGGTSEGDFHAALNFAAVMEAPV+FICRNNGWAIST S
Sbjct: 245 VGAAYSLKMDRKDACAVTYFGDGGTSEGDFHAALNFAAVMEAPVIFICRNNGWAISTPTS 304
Query: 307 EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357
+QFRSDG+VVKGRAYGIRSIRVDGNDALA+Y+AV AR MAISE+RP+L+E
Sbjct: 305 DQFRSDGVVVKGRAYGIRSIRVDGNDALAMYSAVHTARGMAISEQRPILIE 355
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413916414|gb|AFW56346.1| hypothetical protein ZEAMMB73_816012 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 212/281 (75%), Positives = 247/281 (87%)
Query: 78 DHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYS 137
D Q +DFPGGKV + +EM F+PES+ +R+ C+RVLDD+G I GS FQ+VS+E+A+KMYS
Sbjct: 92 DQQAVDFPGGKVSFVAEMNFLPESTRERINCYRVLDDDGRTISGSRFQEVSRELALKMYS 151
Query: 138 HMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWR 197
MVTLQ+MD++ YEAQRQGR SFYLT+ GEEAINI SAAALS DD +LPQYREPGVLLWR
Sbjct: 152 EMVTLQIMDTIFYEAQRQGRISFYLTSNGEEAINIASAAALSMDDIVLPQYREPGVLLWR 211
Query: 198 GYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK 257
G+TLQ+FANQ F NK D GKGRQMPIHYGS +LNY T+SSPIATQLP AVG AYSLKM+K
Sbjct: 212 GFTLQEFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVGAAYSLKMDK 271
Query: 258 KDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVK 317
KDACA+ Y GDGGTSEGDFHAALNFAAVMEAPV+F CRNNGWAIST +EQFRSDG+V++
Sbjct: 272 KDACAITYFGDGGTSEGDFHAALNFAAVMEAPVIFFCRNNGWAISTPTTEQFRSDGVVIR 331
Query: 318 GRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358
G+AYGIR IRVDGNDALAVY+A+ AAREMA++E RP+LVEV
Sbjct: 332 GQAYGIRGIRVDGNDALAVYSAIHAAREMAVTEGRPILVEV 372
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 364 | ||||||
| TAIR|locus:2027072 | 472 | AT1G21400 "AT1G21400" [Arabido | 0.978 | 0.754 | 0.670 | 1.3e-125 | |
| TAIR|locus:2184702 | 472 | AT5G09300 "AT5G09300" [Arabido | 0.766 | 0.591 | 0.774 | 4.9e-117 | |
| ZFIN|ZDB-GENE-050522-376 | 446 | bckdha "branched chain keto ac | 0.752 | 0.614 | 0.514 | 1.5e-76 | |
| FB|FBgn0037709 | 439 | CG8199 [Drosophila melanogaste | 0.755 | 0.626 | 0.512 | 1.3e-75 | |
| UNIPROTKB|F5H5P2 | 479 | BCKDHA "Uncharacterized protei | 0.862 | 0.655 | 0.463 | 9.3e-75 | |
| WB|WBGene00012713 | 432 | Y39E4A.3 [Caenorhabditis elega | 0.739 | 0.622 | 0.523 | 9.3e-75 | |
| RGD|2196 | 441 | Bckdha "branched chain ketoaci | 0.752 | 0.621 | 0.5 | 1.2e-74 | |
| UNIPROTKB|B4DP47 | 448 | BCKDHA "2-oxoisovalerate dehyd | 0.752 | 0.611 | 0.503 | 1.5e-74 | |
| UNIPROTKB|P12694 | 445 | BCKDHA "2-oxoisovalerate dehyd | 0.752 | 0.615 | 0.503 | 1.5e-74 | |
| DICTYBASE|DDB_G0286335 | 441 | bkdA "branched-chain alpha-ket | 0.728 | 0.600 | 0.518 | 1.9e-74 |
| TAIR|locus:2027072 AT1G21400 "AT1G21400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1234 (439.4 bits), Expect = 1.3e-125, P = 1.3e-125
Identities = 240/358 (67%), Positives = 280/358 (78%)
Query: 1 MAIWLTKSRAMAQCLRQRVGLLRILSGQSCSSPSTIFPLQQYNSPSLPSKTLFSPGRSES 60
MAIW +S+ + LR + L IL + S + Q +S + S F R ES
Sbjct: 1 MAIWFARSKTLVSSLRHNLNLSTILIKRDYSHRPIFYTTSQLSSTAYLSP--FGSLRHES 58
Query: 61 TVAANQXXXXXXXXXXXXHQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIK 120
T Q Q LDFPGGKVGYTSEM+FIPESS +R+PC+RVLD++G +I
Sbjct: 59 TAVETQADHLVQQIDEVDAQELDFPGGKVGYTSEMKFIPESSSRRIPCYRVLDEDGRIIP 118
Query: 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSA 180
SDF VS+++AV+MY M TLQVMD + YEAQRQGR SFYLT++GEEAINI SAAALS
Sbjct: 119 DSDFIPVSEKLAVRMYEQMATLQVMDHIFYEAQRQGRISFYLTSVGEEAINIASAAALSP 178
Query: 181 DDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIA 240
DD +LPQYREPGVLLWRG+TL++FANQ F NKAD GKGRQMPIHYGS +LNY TISSPIA
Sbjct: 179 DDVVLPQYREPGVLLWRGFTLEEFANQCFGNKADYGKGRQMPIHYGSNRLNYFTISSPIA 238
Query: 241 TQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA 300
TQLPQA GV YSLKM+KK+AC V + GDGGTSEGDFHA LNFAAVMEAPVVFICRNNGWA
Sbjct: 239 TQLPQAAGVGYSLKMDKKNACTVTFIGDGGTSEGDFHAGLNFAAVMEAPVVFICRNNGWA 298
Query: 301 ISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358
IST+ISEQFRSDGIVVKG+AYGIRSIRVDGNDALAVY+AV++AREMA++E+RPVL+E+
Sbjct: 299 ISTHISEQFRSDGIVVKGQAYGIRSIRVDGNDALAVYSAVRSAREMAVTEQRPVLIEM 356
|
|
| TAIR|locus:2184702 AT5G09300 "AT5G09300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
Identities = 216/279 (77%), Positives = 245/279 (87%)
Query: 79 HQVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSH 138
HQV+DFPGGKV +T E++FI ES ++RVPC+RVLDDNG+LI S F QVS+EVAVK+YS
Sbjct: 77 HQVMDFPGGKVAFTPEIQFISESDKERVPCYRVLDDNGQLITNSQFVQVSEEVAVKIYSD 136
Query: 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRG 198
MVTLQ+MD++ YEAQRQGR SFY T IGEEAINI SAAAL+ D I PQYREPGVLLWRG
Sbjct: 137 MVTLQIMDNIFYEAQRQGRLSFYATAIGEEAINIASAAALTPQDVIFPQYREPGVLLWRG 196
Query: 199 YTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK 258
+TLQ+FANQ F NK+D GKGRQMP+HYGS KLNY T+S+ IATQLP AVG AYSLKM+KK
Sbjct: 197 FTLQEFANQCFGNKSDYGKGRQMPVHYGSNKLNYFTVSATIATQLPNAVGAAYSLKMDKK 256
Query: 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKG 318
DACAV Y GDGGTSEGDFHAALN AAVMEAPV+FICRNNGWAIST S+QFRSDG+VVKG
Sbjct: 257 DACAVTYFGDGGTSEGDFHAALNIAAVMEAPVLFICRNNGWAISTPTSDQFRSDGVVVKG 316
Query: 319 RAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357
RAYGIRSIRVDGNDALA+Y+AV AREMAI E+RP+L+E
Sbjct: 317 RAYGIRSIRVDGNDALAMYSAVHTAREMAIREQRPILIE 355
|
|
| ZFIN|ZDB-GENE-050522-376 bckdha "branched chain keto acid dehydrogenase E1, alpha polypeptide" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
Identities = 141/274 (51%), Positives = 185/274 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + + FI + +P +RV+D G++I S+ Q+SKE + Y M L
Sbjct: 55 FPGASAEFIDHLEFIQPNVISGIPVYRVMDRQGQIINPSEDPQLSKETVLNFYQKMTLLN 114
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE +IGSAAAL D + QYRE GVL++RG+ L
Sbjct: 115 TMDRILYESQRQGRISFYMTNYGEEGTHIGSAAALDPSDLVFGQYREAGVLMYRGFPLDL 174
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q +AN D GKGRQMP+HYGSK LN++TISSP+ATQ+PQA G AY++K E + +
Sbjct: 175 FMAQCYANADDLGKGRQMPVHYGSKDLNFVTISSPLATQIPQAAGAAYAVKRENANRVVI 234
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NF+A +E P++F CRNNG+AIST +EQ+R DGI +G YG+
Sbjct: 235 CYFGEGAASEGDAHAGFNFSATLECPLIFFCRNNGYAISTPTNEQYRGDGIAARGPGYGL 294
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357
SIRVDGND AVY A + AR A++E +P L+E
Sbjct: 295 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIE 328
|
|
| FB|FBgn0037709 CG8199 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 142/277 (51%), Positives = 190/277 (68%)
Query: 83 DFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTL 142
+FPG K + S++ I +P +RV+D +G + + Q+ +EV KM+ MV L
Sbjct: 45 NFPGAKAPFVSKLNLIQPEDYAPIPIYRVMDQDGYIADETQDPQLGREVVEKMFRDMVLL 104
Query: 143 QVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQ 202
MD +LYE+QRQGR SFY+T GEEA +IGSAAAL D I QYRE GVL+WRG+ +
Sbjct: 105 NTMDKILYESQRQGRISFYMTNFGEEASHIGSAAALEMRDLIYGQYREAGVLVWRGFRID 164
Query: 203 QFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKME-KKDAC 261
QF +Q + N D G+G+QMP+HYGS++LN++TISSP++TQ+PQAVG AY++K+ DAC
Sbjct: 165 QFIDQCYGNTDDLGRGKQMPVHYGSRELNFVTISSPLSTQMPQAVGAAYAMKLRPNNDAC 224
Query: 262 AVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKG-RA 320
V Y G+G SEGD HAA NFAA + P + CRNNG+AIST EQ++ DGI +G
Sbjct: 225 VVCYFGEGAASEGDAHAAFNFAATLGCPAILFCRNNGFAISTPSHEQYKGDGIAGRGPMG 284
Query: 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357
YGI +IRVDG D AVY A++AARE + E +PV+ E
Sbjct: 285 YGITTIRVDGTDVFAVYNAMKAAREYVLKENKPVVFE 321
|
|
| UNIPROTKB|F5H5P2 BCKDHA "Uncharacterized protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 147/317 (46%), Positives = 195/317 (61%)
Query: 41 QYNSPSLPSKTLFSPGRSESTVAANQXXXXXXXXXXXXHQVLDFPGGKVGYTSEMRFIPE 100
Q+ SP LPS S G E + FPG + ++ FI
Sbjct: 48 QFLSPPLPS---VSAGLGEPRPPDVEHPPRQQQQFSSLDDKPQFPGASAEFIDKLEFIQP 104
Query: 101 SSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSF 160
+ +P +RV+D G++I S+ + KE +K+Y M L MD +LYE+QRQGR SF
Sbjct: 105 NVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISF 164
Query: 161 YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQ 220
Y+T GEE ++GSAAAL D + QYRE GVL++R Y L+ F Q + N +D GKGRQ
Sbjct: 165 YMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQ 224
Query: 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAAL 280
MP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + + Y G+G SEGD HA
Sbjct: 225 MPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGF 284
Query: 281 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAV 340
NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI SIRVDGND AVY A
Sbjct: 285 NFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNAT 344
Query: 341 QAAREMAISEKRPVLVE 357
+ AR A++E +P L+E
Sbjct: 345 KEARRRAVAENQPFLIE 361
|
|
| WB|WBGene00012713 Y39E4A.3 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 142/271 (52%), Positives = 189/271 (69%)
Query: 88 KVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDS 147
K +T ++ + +P +RV + G++I S ++ ++KMY M L +MD
Sbjct: 42 KAAFTEKLEIVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDR 101
Query: 148 VLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQ 207
+LY++QRQGR SFY+T+ GEE ++GSAAAL D I QYRE GVLLWRGYT++ F NQ
Sbjct: 102 ILYDSQRQGRISFYMTSFGEEGNHVGSAAALEPQDLIYGQYREAGVLLWRGYTMENFMNQ 161
Query: 208 VFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK-KDACAVAYT 266
+ N D GKGRQMP+H+G+K+ N++TISSP+ TQLPQAVG AY+ K +K + AV Y
Sbjct: 162 CYGNADDLGKGRQMPMHFGTKERNFVTISSPLTTQLPQAVGSAYAFKQQKDNNRIAVVYF 221
Query: 267 GDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSI 326
GDG SEGD HAA NFAA ++ P++F CRNNG+AIST SEQ+ DGI KG AYG+ +I
Sbjct: 222 GDGAASEGDAHAAFNFAATLKCPIIFFCRNNGYAISTPTSEQYGGDGIAGKGPAYGLHTI 281
Query: 327 RVDGNDALAVYTAVQAAREMAISEKRPVLVE 357
RVDGND LAVY A + AR +A++ RPVL+E
Sbjct: 282 RVDGNDLLAVYNATKEARRVALTN-RPVLIE 311
|
|
| RGD|2196 Bckdha "branched chain ketoacid dehydrogenase E1, alpha polypeptide" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 137/274 (50%), Positives = 184/274 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + +E +K+Y M L
Sbjct: 50 FPGASAEFVDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKLYRSMTLLN 109
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 110 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLEL 169
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 170 FMAQCYGNVSDPGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANQIVI 229
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 230 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 289
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357
SIRVDGND AVY A + AR A++E +P L+E
Sbjct: 290 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIE 323
|
|
| UNIPROTKB|B4DP47 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 138/274 (50%), Positives = 184/274 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 32 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 91
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 92 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 151
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 152 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 211
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 212 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 271
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357
SIRVDGND AVY A + AR A++E +P L+E
Sbjct: 272 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIE 305
|
|
| UNIPROTKB|P12694 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 138/274 (50%), Positives = 184/274 (67%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 54 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 113
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + QYRE GVL++R Y L+
Sbjct: 114 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLEL 173
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 174 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 233
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 234 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 293
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357
SIRVDGND AVY A + AR A++E +P L+E
Sbjct: 294 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIE 327
|
|
| DICTYBASE|DDB_G0286335 bkdA "branched-chain alpha-keto acid dehydrogenase E1 alpha chain" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 139/268 (51%), Positives = 187/268 (69%)
Query: 91 YTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLY 150
YT+++ + + +PC+ ++D G + K SKE +KMY+ M+TL VMDS+LY
Sbjct: 51 YTNKLEV--QELKHYIPCYTIMDQEGVVSKPDQDPNFSKEEVIKMYTTMLTLNVMDSILY 108
Query: 151 EAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFA 210
+ QRQGR SFY+T+ GEEAI+IGSAAAL D I QYRE GV +WRG+T+ NQ
Sbjct: 109 DVQRQGRISFYMTSFGEEAIHIGSAAALEMSDTIFAQYRETGVFMWRGFTINDIINQCCT 168
Query: 211 NKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGG 270
N+ D GKGRQMP+H+GS+K+N TISSP+ TQLPQAVG +Y+ K+ + C + Y G+G
Sbjct: 169 NEHDLGKGRQMPMHFGSRKINLQTISSPLTTQLPQAVGSSYAQKLAGEKNCTIVYFGEGA 228
Query: 271 TSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKG-RAYGIRSIRVD 329
SEGDFHAA+NFAA + P +F CRNN WAIST EQ++ DGI +G YG+++IRVD
Sbjct: 229 ASEGDFHAAMNFAAALSTPTIFFCRNNKWAISTPSKEQYKGDGIAGRGPNGYGMKTIRVD 288
Query: 330 GNDALAVYTAVQAAREMAISEKRPVLVE 357
GND AVY + AR++A+ E+ PVL+E
Sbjct: 289 GNDIWAVYNVTKLARKIAVEEQVPVLIE 316
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O45924 | ODBA_CAEEL | 1, ., 2, ., 4, ., 4 | 0.5220 | 0.7417 | 0.6264 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.2.4 | 0.766 |
| 3rd Layer | 2.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 364 | |||
| cd02000 | 293 | cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph | 1e-108 | |
| TIGR03181 | 341 | TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E | 4e-92 | |
| COG1071 | 358 | COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena | 2e-90 | |
| pfam00676 | 303 | pfam00676, E1_dh, Dehydrogenase E1 component | 2e-79 | |
| TIGR03182 | 315 | TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E | 8e-43 | |
| PLN02374 | 433 | PLN02374, PLN02374, pyruvate dehydrogenase (acetyl | 8e-24 | |
| PLN02269 | 362 | PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp | 3e-23 | |
| CHL00149 | 341 | CHL00149, odpA, pyruvate dehydrogenase E1 componen | 2e-22 | |
| cd00568 | 168 | cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) | 2e-12 | |
| cd02012 | 255 | cd02012, TPP_TK, Thiamine pyrophosphate (TPP) fami | 5e-12 | |
| COG3959 | 243 | COG3959, COG3959, Transketolase, N-terminal subuni | 2e-08 | |
| cd02007 | 195 | cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam | 6e-08 | |
| PRK05899 | 586 | PRK05899, PRK05899, transketolase; Reviewed | 2e-07 | |
| cd02002 | 178 | cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) fa | 3e-07 | |
| TIGR00118 | 558 | TIGR00118, acolac_lg, acetolactate synthase, large | 1e-04 | |
| pfam02775 | 151 | pfam02775, TPP_enzyme_C, Thiamine pyrophosphate en | 4e-04 | |
| COG0021 | 663 | COG0021, TktA, Transketolase [Carbohydrate transpo | 6e-04 | |
| TIGR00204 | 617 | TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate syn | 0.002 |
| >gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Score = 318 bits (817), Expect = e-108
Identities = 98/226 (43%), Positives = 133/226 (58%), Gaps = 1/226 (0%)
Query: 135 MYSHMVTLQVMDSVLYEAQRQGR-FSFYLTTIGEEAINIGSAAALSADDFILPQYREPGV 193
+Y MV ++ D L E RQG+ FY +IG+EA+ +G AAAL D++ P YR+ G
Sbjct: 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGH 60
Query: 194 LLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSL 253
L RG L++ ++F + KGR +H G K+ N+ + + Q+P A G A +L
Sbjct: 61 ALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALAL 120
Query: 254 KMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDG 313
K +D AV + GDG T+EGDFH ALNFAA+ + PV+F+C NNG+AIST S Q
Sbjct: 121 KYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQTAGTS 180
Query: 314 IVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359
I + AYGI IRVDGND LAVY A + A E A + P L+E
Sbjct: 181 IADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAV 226
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). Length = 293 |
| >gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Score = 279 bits (715), Expect = 4e-92
Identities = 103/251 (41%), Positives = 138/251 (54%), Gaps = 9/251 (3%)
Query: 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIG 166
+VLD++G ++ +S E V++Y MV + D+ QRQGR Y +G
Sbjct: 1 ELVQVLDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLG 60
Query: 167 EEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYG 226
+EA +GSA AL DD++ P YR+ +L RG L + D +G P
Sbjct: 61 QEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLVEI----LLYWRGDERGSWDPE--- 113
Query: 227 SKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM 286
+N + + PI TQ A GVAY+LK+ +D AV Y GDGGTSEGDF+ ALNFA V
Sbjct: 114 --GVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVF 171
Query: 287 EAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREM 346
+APVVF +NN WAIS S+Q + + K AYGI ++VDGND LAVY + A E
Sbjct: 172 KAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVER 231
Query: 347 AISEKRPVLVE 357
A S P L+E
Sbjct: 232 ARSGGGPTLIE 242
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 341 |
| >gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 274 bits (704), Expect = 2e-90
Identities = 105/258 (40%), Positives = 149/258 (57%), Gaps = 5/258 (1%)
Query: 106 VPCFRVLDDNGELI--KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGR-FSFYL 162
RVLD++G + +SKE +++Y M+ ++ D + + QRQG+ FY
Sbjct: 1 FSLIRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYH 60
Query: 163 TTIGEEAINIGSAAALSAD-DFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQM 221
IG+EA+ +G+AAAL D+I P YR+ G LL RG L++ ++ KGR
Sbjct: 61 LYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGG 120
Query: 222 PIHYGSKKLNYITISSPIATQLPQAVGVAYSLKM-EKKDACAVAYTGDGGTSEGDFHAAL 280
+HY K+ ++ S + TQ+P A G A +LK KD AVA+ GDG T++GDFH AL
Sbjct: 121 SMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEAL 180
Query: 281 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAV 340
NFAAV + PVVF+ NN +AIS S Q ++ I + AYGI +RVDGND LAVY A
Sbjct: 181 NFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAA 240
Query: 341 QAAREMAISEKRPVLVEV 358
+ A E A + + P L+E
Sbjct: 241 KEAVERARAGEGPTLIEA 258
|
Length = 358 |
| >gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component | Back alignment and domain information |
|---|
Score = 244 bits (626), Expect = 2e-79
Identities = 84/221 (38%), Positives = 120/221 (54%), Gaps = 2/221 (0%)
Query: 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRG 198
M ++ D+ QR+G F G+EA+ +G AAAL+ D+++P YR+ G LL RG
Sbjct: 4 MTLRRMEDARDALYQRKGIRGFCHLYAGQEALQVGIAAALNPGDYVIPTYRDHGNLLARG 63
Query: 199 YTLQQFANQVFANK--ADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKME 256
+L+Q ++ N+ GKG M +Y K + + + Q+P G+A + K
Sbjct: 64 VSLEQVMAELTGNEAGCSKGKGGSMHGYYAPKNNRFYGGNGIVGAQVPLGAGIALAAKYR 123
Query: 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVV 316
K A+ GDG T++G F ALNFAA+ + PV+F+C NN +AIST S
Sbjct: 124 GKKEVAITLFGDGATNQGQFFEALNFAALWKLPVIFVCENNQYAISTPAERSSASTTYAD 183
Query: 317 KGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357
+ R YGI IRVDG D LAVY AV+ A E A + P L+E
Sbjct: 184 RARGYGIPGIRVDGMDPLAVYQAVKFAAERARTGNGPTLIE 224
|
This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase. Length = 303 |
| >gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 8e-43
Identities = 68/232 (29%), Positives = 120/232 (51%), Gaps = 1/232 (0%)
Query: 129 KEVAVKMYSHMVTLQVMDSVLYEAQRQGR-FSFYLTTIGEEAINIGSAAALSADDFILPQ 187
KE +++Y M+ ++ + + G+ F IG+EA+ +G AAL DD+++
Sbjct: 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITS 60
Query: 188 YREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAV 247
YR+ G L RG ++ ++ + KG+ +H ++ N+ + Q+P A
Sbjct: 61 YRDHGHALARGVPPKEVMAELTGRETGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLAT 120
Query: 248 GVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISE 307
G+A++ K D + GDG ++G F+ + N AA+ + PV+F+ NN +A+ T +
Sbjct: 121 GLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTAVER 180
Query: 308 QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359
+ +G ++GI RVDG D LAV A + A E A S K P+L+E++
Sbjct: 181 SSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMK 232
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 315 |
| >gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 8e-24
Identities = 72/242 (29%), Positives = 116/242 (47%), Gaps = 14/242 (5%)
Query: 127 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGR-FSFYLTTIGEEAINIGSAAALSADDFIL 185
V++E +++Y MV + + + + +G+ F F G+EA++ G L DD ++
Sbjct: 83 VTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVV 142
Query: 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQ 245
YR+ L +G + +++F +G+ +H SK+ N + + I +P
Sbjct: 143 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 202
Query: 246 AVGVAYS-------LKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG 298
A G A+S LK E D +A+ GDG + G F LN AA+ + P+VF+ NN
Sbjct: 203 ATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 262
Query: 299 WAISTNISEQFRSDG---IVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVL 355
WAI + R+ I KG A+G+ + VDG D L V + A E A + P L
Sbjct: 263 WAIGMS---HLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTL 319
Query: 356 VE 357
VE
Sbjct: 320 VE 321
|
Length = 433 |
| >gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 3e-23
Identities = 74/241 (30%), Positives = 120/241 (49%), Gaps = 24/241 (9%)
Query: 128 SKEVAVKMYSHMVTLQVMD---SVLYEAQR-QGRFSFYLTTIGEEAINIGSAAALSADDF 183
SK+ V + M ++ M+ LY+A+ +G Y G+EA+ +G AA++ +D
Sbjct: 28 SKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLY---DGQEAVAVGMEAAITKEDA 84
Query: 184 ILPQYREPGVLLWRGYTLQQFANQVFANK--ADDGKGRQMPIHYGSKKLNYITISSPIAT 241
I+ YR+ L RG T+ + ++ K GKG M H+ K N+ +
Sbjct: 85 IITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSM--HFYKKDANFYGGHGIVGA 142
Query: 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI 301
Q+P G+A++ K K++ A A GDG ++G ALN AA+ + PV+F+C NN + +
Sbjct: 143 QVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYGM 202
Query: 302 STNI-----SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356
T S + G V G ++VDG D LAV A + A+E A+S P+++
Sbjct: 203 GTAEWRAAKSPAYYKRGDYVPG-------LKVDGMDVLAVKQACKFAKEHALS-NGPIVL 254
Query: 357 E 357
E
Sbjct: 255 E 255
|
Length = 362 |
| >gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 2e-22
Identities = 66/246 (26%), Positives = 110/246 (44%), Gaps = 20/246 (8%)
Query: 126 QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGR-FSFYLTTIGEEAINIGSAAALSADDFI 184
++ + +Y M+ + + + + +G+ F F G+EA++ G L+ D++
Sbjct: 16 NINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYV 75
Query: 185 LPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLP 244
YR+ L +G + ++F + +GR +H S N++ + I +P
Sbjct: 76 CSTYRDHVHALSKGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIP 135
Query: 245 QAVGVAYS-------LKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN 297
A+G A+ LK + + GDG T+ G F LN A + + P++F+ NN
Sbjct: 136 IALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENN 195
Query: 298 GWAI------STNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEK 351
WAI ST+I E I K A+G+ I VDG D LAV + A E A
Sbjct: 196 QWAIGMAHHRSTSIPE------IHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGD 249
Query: 352 RPVLVE 357
P L+E
Sbjct: 250 GPTLIE 255
|
Length = 341 |
| >gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 36/142 (25%), Positives = 51/142 (35%), Gaps = 25/142 (17%)
Query: 230 LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAP 289
T + LP A+G A + D V GDGG L A P
Sbjct: 39 FLTSTGFGAMGYGLPAAIGAA----LAAPDRPVVCIAGDGGFMMT--GQELATAVRYGLP 92
Query: 290 VVFICRNNGWAISTNISEQFRSDGIVVKG------------RAYGIRSIRVDGNDALAVY 337
V+ + NNG + + Q G V G AYG + +RV+ + L
Sbjct: 93 VIVVVFNNGGYGTIRMH-QEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVEDPEDLE-- 149
Query: 338 TAVQAAREMAISEKRPVLVEVR 359
AA A++ P L+EV+
Sbjct: 150 ----AALAEALAAGGPALIEVK 167
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. Length = 168 |
| >gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 5e-12
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVME-APVVFICRNNGWAI 301
L AVG+A + K+ D GDG EG A +FA + ++ I +N I
Sbjct: 111 LSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQI 170
Query: 302 STNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359
+ ++ + K A+G I VDG+D + A++ A++ S+ +P L+ +
Sbjct: 171 DGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKK---SKGKPTLIIAK 225
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. Length = 255 |
| >gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAP--VVFICRNNGWA 300
L AVG+A K++ GDG EG A AA + + + RN
Sbjct: 125 LSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKL-Q 183
Query: 301 ISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356
+ E + + K A+G I VDG+D + A++ A+ S+ RP ++
Sbjct: 184 LDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKG---SKGRPTVI 236
|
Length = 243 |
| >gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 6e-08
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 241 TQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA 300
T + A+G+A + ++ K +A GDG + G ALN A +++ ++ I +N +
Sbjct: 79 TSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMS 138
Query: 301 ISTNISEQ---FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357
IS N+ F G R G VDG++ A+ ++ +++ K PVL+
Sbjct: 139 ISPNVGTPGNLFEELGF----RYIGP----VDGHNIEALIKVLKEVKDL----KGPVLLH 186
Query: 358 V 358
V
Sbjct: 187 V 187
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). Length = 195 |
| >gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-07
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 20/130 (15%)
Query: 243 LPQAVGVAYSLKME----KKDACAV--AYT----GDGGTSEGDFHAALNFAAVME-APVV 291
L AVG+A + K + + YT GDG EG H A + A ++ ++
Sbjct: 124 LANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLI 183
Query: 292 FICRNNGWAISTNISEQFRSDGIVVKGR--AYGIRSIRVDGNDALAVYTAVQAAREMAIS 349
I +N +I F D VK R AYG I VDG+D A+ A++ A+ +
Sbjct: 184 VIYDDNRISIDGPTEGWFTED---VKKRFEAYGWHVIEVDGHDVEAIDAAIEEAK----A 236
Query: 350 EKRPVLVEVR 359
+P L+ +
Sbjct: 237 STKPTLIIAK 246
|
Length = 586 |
| >gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-07
Identities = 35/139 (25%), Positives = 51/139 (36%), Gaps = 36/139 (25%)
Query: 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFH---AALNFAAVMEAPVVF-ICRNNG 298
LP AVG A + D VA GDG F AL AA PV I N G
Sbjct: 55 LPAAVGAA----LANPDRKVVAIIGDG-----SFMYTIQALWTAARYGLPVTVVILNNRG 105
Query: 299 WAISTNISEQFRSDGIVVKG-----------------RAYGIRSIRVDGNDALAVYTAVQ 341
+ + ++ +G +A+G+ + RV+ + L
Sbjct: 106 YGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVETPEELD------ 159
Query: 342 AAREMAISEKRPVLVEVRL 360
A A++E P L+EV +
Sbjct: 160 EALREALAEGGPALIEVVV 178
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. Length = 178 |
| >gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 36/136 (26%)
Query: 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFH---AALNFAAVMEAPVVFICRNNGW 299
LP A+G K+ K ++ + TGDG F L+ A + PV + NN +
Sbjct: 418 LPAAIGA----KVAKPESTVICITGDGS-----FQMNLQELSTAVQYDIPVKILILNNRY 468
Query: 300 A---------------ISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAR 344
T++ V AYGI+ IR++ + L
Sbjct: 469 LGMVRQWQELFYEERYSHTHMGSL---PDFVKLAEAYGIKGIRIEKPEELD------EKL 519
Query: 345 EMAISEKRPVLVEVRL 360
+ A+S PVL++V +
Sbjct: 520 KEALSSNEPVLLDVVV 535
|
Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this model also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed [Amino acid biosynthesis, Pyruvate family]. Length = 558 |
| >gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 26/130 (20%)
Query: 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAI 301
LP A+G K+ + D VA GDGG L A P+ + N G+ +
Sbjct: 34 LPAAIGA----KLARPDRPVVAIAGDGGF--QMNLQELATAVRYNLPITVVVLNNGGYGM 87
Query: 302 STNISEQF---RSDGIVVKG----------RAYGIRSIRVDGNDALAVYTAVQAAREMAI 348
+ F R G K AYG + RV+ + L A + A+
Sbjct: 88 TRGQQTPFGGGRYSGPDGKDLPPVDFAKLAEAYGAKGARVESPEELE------EALKEAL 141
Query: 349 SEKRPVLVEV 358
P L++V
Sbjct: 142 EHDGPALIDV 151
|
Length = 151 |
| >gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 22/132 (16%)
Query: 243 LPQAVGVAYSLKME----KKDACAV--AYT----GDGGTSEGDFHAALNFAAVMEAP--V 290
L AVG+A + K + + YT GDG EG H A + A ++ +
Sbjct: 122 LANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLI 181
Query: 291 VFICRNNGWAISTNISEQFRSDGIVVKGR--AYGIRSIRV-DGNDALAVYTAVQAAREMA 347
V +N +I + S F D V R AYG IRV DG+D A+ A++ A+
Sbjct: 182 VLY-DSNDISIDGDTSLSFTED---VAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKA-- 235
Query: 348 ISEKRPVLVEVR 359
S +P L+ V+
Sbjct: 236 -STDKPTLIIVK 246
|
Length = 663 |
| >gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW 299
+T + +G+A + + + D V GDG + G ALN A ++ ++ I +N
Sbjct: 114 STSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDMIVILNDNEM 173
Query: 300 AISTNI 305
+IS N+
Sbjct: 174 SISENV 179
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine, Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 617 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 364 | |||
| KOG1182 | 432 | consensus Branched chain alpha-keto acid dehydroge | 100.0 | |
| COG1071 | 358 | AcoA Pyruvate/2-oxoglutarate dehydrogenase complex | 100.0 | |
| PLN02269 | 362 | Pyruvate dehydrogenase E1 component subunit alpha | 100.0 | |
| CHL00149 | 341 | odpA pyruvate dehydrogenase E1 component alpha sub | 100.0 | |
| TIGR03182 | 315 | PDH_E1_alph_y pyruvate dehydrogenase E1 component, | 100.0 | |
| PLN02374 | 433 | pyruvate dehydrogenase (acetyl-transferring) | 100.0 | |
| TIGR03181 | 341 | PDH_E1_alph_x pyruvate dehydrogenase E1 component, | 100.0 | |
| cd02000 | 293 | TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) | 100.0 | |
| PF00676 | 300 | E1_dh: Dehydrogenase E1 component; InterPro: IPR00 | 100.0 | |
| KOG0225 | 394 | consensus Pyruvate dehydrogenase E1, alpha subunit | 100.0 | |
| cd02016 | 265 | TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami | 100.0 | |
| PRK09404 | 924 | sucA 2-oxoglutarate dehydrogenase E1 component; Re | 100.0 | |
| TIGR00239 | 929 | 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon | 100.0 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 100.0 | |
| COG3959 | 243 | Transketolase, N-terminal subunit [Carbohydrate tr | 100.0 | |
| PRK12754 | 663 | transketolase; Reviewed | 99.96 | |
| cd02007 | 195 | TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s | 99.95 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 99.95 | |
| cd02012 | 255 | TPP_TK Thiamine pyrophosphate (TPP) family, Transk | 99.95 | |
| PRK12753 | 663 | transketolase; Reviewed | 99.95 | |
| PF00456 | 332 | Transketolase_N: Transketolase, thiamine diphospha | 99.95 | |
| PTZ00089 | 661 | transketolase; Provisional | 99.94 | |
| PLN02790 | 654 | transketolase | 99.94 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 99.94 | |
| cd02017 | 386 | TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam | 99.94 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 99.93 | |
| PRK05899 | 624 | transketolase; Reviewed | 99.93 | |
| cd02011 | 227 | TPP_PK Thiamine pyrophosphate (TPP) family, Phosph | 99.93 | |
| TIGR00759 | 885 | aceE pyruvate dehydrogenase E1 component, homodime | 99.91 | |
| TIGR03186 | 889 | AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S | 99.91 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 99.91 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.9 | |
| PRK13012 | 896 | 2-oxoacid dehydrogenase subunit E1; Provisional | 99.89 | |
| COG0021 | 663 | TktA Transketolase [Carbohydrate transport and met | 99.89 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.88 | |
| PRK12270 | 1228 | kgd alpha-ketoglutarate decarboxylase; Reviewed | 99.88 | |
| PRK09405 | 891 | aceE pyruvate dehydrogenase subunit E1; Reviewed | 99.88 | |
| KOG0523 | 632 | consensus Transketolase [Carbohydrate transport an | 99.87 | |
| PRK05261 | 785 | putative phosphoketolase; Provisional | 99.81 | |
| cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa | 99.77 | |
| cd02004 | 172 | TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam | 99.76 | |
| cd02013 | 196 | TPP_Xsc_like Thiamine pyrophosphate (TPP) family, | 99.75 | |
| cd02006 | 202 | TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s | 99.74 | |
| cd02002 | 178 | TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC | 99.74 | |
| PRK11864 | 300 | 2-ketoisovalerate ferredoxin oxidoreductase subuni | 99.73 | |
| PF13292 | 270 | DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn | 99.72 | |
| cd02014 | 178 | TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv | 99.72 | |
| KOG0451 | 913 | consensus Predicted 2-oxoglutarate dehydrogenase, | 99.72 | |
| COG0567 | 906 | SucA 2-oxoglutarate dehydrogenase complex, dehydro | 99.71 | |
| cd02015 | 186 | TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet | 99.7 | |
| cd02010 | 177 | TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto | 99.69 | |
| COG1154 | 627 | Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m | 99.68 | |
| cd02003 | 205 | TPP_IolD Thiamine pyrophosphate (TPP) family, IolD | 99.68 | |
| cd02001 | 157 | TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil | 99.68 | |
| cd03372 | 179 | TPP_ComE Thiamine pyrophosphate (TPP) family, ComE | 99.66 | |
| cd03371 | 188 | TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp | 99.66 | |
| cd02005 | 183 | TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, | 99.66 | |
| cd02008 | 178 | TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, | 99.65 | |
| PRK06163 | 202 | hypothetical protein; Provisional | 99.65 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.65 | |
| PF02775 | 153 | TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter | 99.64 | |
| TIGR03846 | 181 | sulfopy_beta sulfopyruvate decarboxylase, beta sub | 99.64 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 99.64 | |
| cd02009 | 175 | TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa | 99.63 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 99.61 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 99.61 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 99.61 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 99.6 | |
| cd03375 | 193 | TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o | 99.6 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 99.6 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 99.6 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 99.59 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 99.59 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 99.59 | |
| KOG0450 | 1017 | consensus 2-oxoglutarate dehydrogenase, E1 subunit | 99.58 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 99.58 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 99.58 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 99.58 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 99.58 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 99.57 | |
| cd03376 | 235 | TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam | 99.57 | |
| PRK07586 | 514 | hypothetical protein; Validated | 99.57 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 99.56 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 99.56 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 99.56 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 99.56 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 99.55 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 99.55 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 99.55 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 99.55 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 99.54 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.54 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 99.54 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 99.54 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 99.54 | |
| PLN02573 | 578 | pyruvate decarboxylase | 99.54 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 99.54 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwi | 99.54 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 99.53 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.53 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 99.53 | |
| PLN02470 | 585 | acetolactate synthase | 99.53 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 99.53 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 99.53 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 99.53 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 99.53 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 99.52 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.52 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 99.52 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 99.52 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 99.51 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 99.51 | |
| cd02018 | 237 | TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru | 99.5 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 99.5 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 99.49 | |
| PRK09628 | 277 | oorB 2-oxoglutarate-acceptor oxidoreductase subuni | 99.48 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 99.47 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 99.45 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 99.45 | |
| PRK07449 | 568 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 | 99.45 | |
| PRK05778 | 301 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.44 | |
| PRK11869 | 280 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.43 | |
| PRK11867 | 286 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.39 | |
| PRK11866 | 279 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.35 | |
| TIGR02177 | 287 | PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta | 99.34 | |
| COG3961 | 557 | Pyruvate decarboxylase and related thiamine pyroph | 99.31 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 99.3 | |
| COG2609 | 887 | AceE Pyruvate dehydrogenase complex, dehydrogenase | 99.21 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.2 | |
| KOG1185 | 571 | consensus Thiamine pyrophosphate-requiring enzyme | 99.12 | |
| PF09364 | 379 | XFP_N: XFP N-terminal domain; InterPro: IPR018970 | 99.09 | |
| COG3962 | 617 | Acetolactate synthase [Amino acid transport and me | 99.01 | |
| PRK11865 | 299 | pyruvate ferredoxin oxidoreductase subunit beta; P | 98.96 | |
| KOG4166 | 675 | consensus Thiamine pyrophosphate-requiring enzyme | 98.89 | |
| COG3960 | 592 | Glyoxylate carboligase [General function predictio | 98.82 | |
| KOG1184 | 561 | consensus Thiamine pyrophosphate-requiring enzyme | 98.72 | |
| COG3957 | 793 | Phosphoketolase [Carbohydrate transport and metabo | 98.29 | |
| COG1013 | 294 | PorB Pyruvate:ferredoxin oxidoreductase and relate | 98.12 | |
| COG1165 | 566 | MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car | 97.84 | |
| COG4231 | 640 | Indolepyruvate ferredoxin oxidoreductase, alpha an | 97.74 | |
| cd03377 | 365 | TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), | 97.29 | |
| cd06586 | 154 | TPP_enzyme_PYR Pyrimidine (PYR) binding domain of | 96.92 | |
| cd07035 | 155 | TPP_PYR_POX_like Pyrimidine (PYR) binding domain o | 96.8 | |
| cd07039 | 164 | TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | 96.66 | |
| PRK13030 | 1159 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 96.39 | |
| PRK09193 | 1165 | indolepyruvate ferredoxin oxidoreductase; Validate | 96.34 | |
| cd07034 | 160 | TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi | 96.27 | |
| cd07038 | 162 | TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom | 96.16 | |
| PF02776 | 172 | TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter | 96.08 | |
| TIGR03845 | 157 | sulfopyru_alph sulfopyruvate decarboxylase, alpha | 95.85 | |
| TIGR02176 | 1165 | pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid | 95.72 | |
| PRK13029 | 1186 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 95.44 | |
| cd07037 | 162 | TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- | 94.59 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 94.18 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 94.13 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 93.9 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 93.8 | |
| PRK07119 | 352 | 2-ketoisovalerate ferredoxin reductase; Validated | 93.72 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 93.43 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 93.38 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 93.34 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 93.25 | |
| PRK08659 | 376 | 2-oxoglutarate ferredoxin oxidoreductase subunit a | 93.17 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 93.07 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 93.07 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 93.06 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 93.01 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 92.98 | |
| cd07033 | 156 | TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai | 92.88 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 92.77 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 92.65 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 92.64 | |
| PLN02470 | 585 | acetolactate synthase | 92.6 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 92.56 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 92.56 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 92.5 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 92.48 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 92.48 | |
| PRK07586 | 514 | hypothetical protein; Validated | 92.46 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 92.42 | |
| PF01855 | 230 | POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta | 92.41 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 92.4 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 92.31 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 92.26 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 92.07 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 91.92 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 91.91 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 91.86 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 91.81 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 91.77 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 91.5 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 91.45 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 91.37 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 91.3 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 91.02 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 91.0 | |
| PRK08366 | 390 | vorA 2-ketoisovalerate ferredoxin oxidoreductase s | 90.96 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 90.87 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 90.57 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 90.56 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 90.25 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 90.01 | |
| PLN02573 | 578 | pyruvate decarboxylase | 89.67 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 89.56 | |
| cd01460 | 266 | vWA_midasin VWA_Midasin: Midasin is a member of th | 89.49 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 89.48 | |
| PRK09627 | 375 | oorA 2-oxoglutarate-acceptor oxidoreductase subuni | 89.45 | |
| TIGR03710 | 562 | OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s | 89.33 | |
| cd07036 | 167 | TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding | 88.99 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 88.45 | |
| PF02779 | 178 | Transket_pyr: Transketolase, pyrimidine binding do | 88.38 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 88.33 | |
| PRK08367 | 394 | porA pyruvate ferredoxin oxidoreductase subunit al | 87.42 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 87.38 | |
| KOG4166 | 675 | consensus Thiamine pyrophosphate-requiring enzyme | 87.27 | |
| PRK09622 | 407 | porA pyruvate flavodoxin oxidoreductase subunit al | 87.22 | |
| TIGR00173 | 432 | menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex | 87.13 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 87.02 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 86.54 | |
| PRK11892 | 464 | pyruvate dehydrogenase subunit beta; Provisional | 86.16 | |
| COG4032 | 172 | Predicted thiamine-pyrophosphate-binding protein [ | 85.24 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 85.17 | |
| COG0674 | 365 | PorA Pyruvate:ferredoxin oxidoreductase and relate | 84.94 | |
| PTZ00089 | 661 | transketolase; Provisional | 84.65 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 84.3 | |
| PRK05899 | 624 | transketolase; Reviewed | 82.52 | |
| PLN02683 | 356 | pyruvate dehydrogenase E1 component subunit beta | 82.19 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 81.8 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 81.52 |
| >KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-86 Score=631.08 Aligned_cols=283 Identities=65% Similarity=1.064 Sum_probs=278.6
Q ss_pred ccccCCCCccCccccccccCCCCCCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 017890 81 VLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSF 160 (364)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f 160 (364)
..+|||+++.||++|+|++++..+.||||||||.+|++++++++|.++++..++||+.|+++++||+++|+.||||||+|
T Consensus 37 ~~~fpg~ka~ft~kl~fI~~~d~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSF 116 (432)
T KOG1182|consen 37 YKDFPGAKAAFTSKLEFIQPSDTPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISF 116 (432)
T ss_pred hccCCCCccccccceeecCcccCCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcc
Q 017890 161 YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIA 240 (364)
Q Consensus 161 ~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG 240 (364)
|||++||||+.||+++||.|+|+||+|||+.|||+|||++++++++||+||..+.++|||||+||++++.|++++++||.
T Consensus 117 YmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tisspla 196 (432)
T KOG1182|consen 117 YMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLA 196 (432)
T ss_pred EEeccchhhhhhhhhhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhhccCC-CeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHh
Q 017890 241 TQLPQAVGVAYSLKMEKKD-ACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGR 319 (364)
Q Consensus 241 ~~lp~AvG~A~A~k~~~~~-~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~ 319 (364)
+|||+|+|+|||+|+..++ +++||++|||+++||++|.+||||+++++||||||+||||+||||+.+|+.+++|+.++.
T Consensus 197 tqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~ 276 (432)
T KOG1182|consen 197 TQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGP 276 (432)
T ss_pred hccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEecc
Confidence 9999999999999976555 899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 320 a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
+||+.++||||||+++||.|+++|+++|..+.+|+|||++|||.
T Consensus 277 aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRv 320 (432)
T KOG1182|consen 277 AYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRV 320 (432)
T ss_pred ccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999995
|
|
| >COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-69 Score=528.30 Aligned_cols=257 Identities=40% Similarity=0.630 Sum_probs=246.8
Q ss_pred CeeEEecCCCCcccCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccccCCchhHHHHHHHhhcCCC-c
Q 017890 107 PCFRVLDDNGELIKGSDFQ--QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS-FYLTTIGEEAINIGSAAALSAD-D 182 (364)
Q Consensus 107 ~~~rv~~~~g~~~~~~~~~--~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~-f~~~~~GqEa~~vg~a~aL~~~-D 182 (364)
+.++|++.+|+.+.+.... .+++++++++|+.|+++|.||+++..++|||+|+ |||++.||||++||++.+|+++ |
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D 81 (358)
T COG1071 2 SLIRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGED 81 (358)
T ss_pred CceeccCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCC
Confidence 5789999999999876444 7999999999999999999999999999999998 9999999999999999999976 9
Q ss_pred EEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCC-e
Q 017890 183 FILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDA-C 261 (364)
Q Consensus 183 ~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~-~ 261 (364)
|++++||+|++++++|+++.++|.+++|+.+|+++|+++|+|+.+++.++++.++++|+|+|+|+|+|+|.|+++.+. +
T Consensus 82 ~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~V 161 (358)
T COG1071 82 WIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGV 161 (358)
T ss_pred EeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999554 9
Q ss_pred EEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHH
Q 017890 262 AVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQ 341 (364)
Q Consensus 262 vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~ 341 (364)
++|++|||++++|+|||+||||+.|+|||||+|+||+|+||+|...+...+.++.|+.+||+++++|||||+.+||++++
T Consensus 162 a~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~ 241 (358)
T COG1071 162 AVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAK 241 (358)
T ss_pred EEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998878777778889999999999999999999999999
Q ss_pred HHHHHhhcCCCcEEEEEEeecc
Q 017890 342 AAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 342 ~A~~~ar~~~~P~LIea~T~R~ 363 (364)
+|+++||++++|+|||++|||+
T Consensus 242 ~A~e~AR~g~GPtLIE~~tYR~ 263 (358)
T COG1071 242 EAVERARAGEGPTLIEAVTYRY 263 (358)
T ss_pred HHHHHHHcCCCCEEEEEEEeec
Confidence 9999999999999999999997
|
|
| >PLN02269 Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-60 Score=472.35 Aligned_cols=237 Identities=27% Similarity=0.438 Sum_probs=229.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHH
Q 017890 125 QQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203 (364)
Q Consensus 125 ~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri-~f~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~ 203 (364)
+.+++++++++|+.|+++|.||+++.++++||+| +|||++.||||++||++++|+++||+|++||+|++++++|+++++
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~ 104 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLE 104 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHH
Confidence 4789999999999999999999999999999999 599999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHH
Q 017890 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFA 283 (364)
Q Consensus 204 ~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~A 283 (364)
+|.+++|+.+|+++|+++++|+.+++.|+++.++++|+|+|+|+|+|+|.|+++.+.+++|++|||+++||.|||+||+|
T Consensus 105 ~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A 184 (362)
T PLN02269 105 VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIA 184 (362)
T ss_pred HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 284 AVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 284 a~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
+.|+||+||||+||+|+++++..++.....+++++ +++++++|||||+++|++++++|++++|+ ++|+|||++|||+
T Consensus 185 ~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~ 261 (362)
T PLN02269 185 ALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRY 261 (362)
T ss_pred hccCcCEEEEEeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcC
Confidence 99999999999999999999988888878887655 68999999999999999999999999999 9999999999998
Q ss_pred C
Q 017890 364 W 364 (364)
Q Consensus 364 ~ 364 (364)
+
T Consensus 262 ~ 262 (362)
T PLN02269 262 H 262 (362)
T ss_pred C
Confidence 5
|
|
| >CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-59 Score=462.74 Aligned_cols=242 Identities=24% Similarity=0.387 Sum_probs=233.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCH
Q 017890 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTL 201 (364)
Q Consensus 123 ~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri-~f~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~ 201 (364)
+.+.+++|+++++|+.|+++|.||+++.++++||+| +|||++.||||++||++.+|+++||+|++||+|++++++|+++
T Consensus 13 ~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~ 92 (341)
T CHL00149 13 NENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPP 92 (341)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCH
Confidence 345799999999999999999999999999999999 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhcc-------CCCeEEEEeCCCccccc
Q 017890 202 QQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK-------KDACAVAYTGDGGTSEG 274 (364)
Q Consensus 202 ~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~-------~~~~vv~~~GDGa~~eG 274 (364)
+++|.+++|+.+|+++|+++++|+.+++.++++.+++||+++|+|+|+|+|.|+++ ++++|||++|||++++|
T Consensus 93 ~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G 172 (341)
T CHL00149 93 KNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNG 172 (341)
T ss_pred HHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhc
Confidence 99999999999999999999999998888999999999999999999999999886 58999999999999999
Q ss_pred cHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcE
Q 017890 275 DFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPV 354 (364)
Q Consensus 275 ~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~ 354 (364)
.+||+||+|+.|+||+||||+||+|+++++...+....++++++++||+++++|||+|++++++++++|++++|++++|+
T Consensus 173 ~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~ 252 (341)
T CHL00149 173 QFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPT 252 (341)
T ss_pred HHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 99999999999999999999999999999988887788999999999999999999999999999999999999999999
Q ss_pred EEEEEeeccC
Q 017890 355 LVEVRLNFLW 364 (364)
Q Consensus 355 LIea~T~R~~ 364 (364)
|||++|||++
T Consensus 253 lIev~tyR~~ 262 (341)
T CHL00149 253 LIEALTYRFR 262 (341)
T ss_pred EEEEEEecCC
Confidence 9999999985
|
|
| >TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-59 Score=457.86 Aligned_cols=236 Identities=29% Similarity=0.485 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHH
Q 017890 129 KEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQ 207 (364)
Q Consensus 129 ~e~l~~ly~~M~~~R~~D~~~~~~~rqGri-~f~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~ 207 (364)
+|+++++|+.|+++|.||+++.+++|||+| +|+|++.||||++||++.+|+++||+|++||+|++++++|++++++|.+
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 478999999999999999999999999999 5899999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcC
Q 017890 208 VFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVME 287 (364)
Q Consensus 208 ~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~ 287 (364)
++|+.+|+++||++++|+.+++.|+.+.+++||+++|+|+|+|+|.|+++++++|||++|||++++|.+||+||+|+.++
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 288 APVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 288 LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
+|+||||.||+|+++++...+....++++++++||+++++|||+|++++++++++|++++|++++|+|||++|||++
T Consensus 161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 237 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFR 237 (315)
T ss_pred cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCC
Confidence 99999999999999999888887889999999999999999999999999999999999999999999999999985
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >PLN02374 pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-57 Score=462.27 Aligned_cols=242 Identities=28% Similarity=0.414 Sum_probs=233.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCH
Q 017890 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTL 201 (364)
Q Consensus 123 ~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri-~f~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~ 201 (364)
..+.+++|+++++|+.|+++|.||+++.++++||+| +|+|++.||||++||++++|+++||+|++||+|+++|++|+++
T Consensus 79 ~~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~ 158 (433)
T PLN02374 79 SDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPA 158 (433)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCH
Confidence 345899999999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhcc-------CCCeEEEEeCCCccccc
Q 017890 202 QQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEK-------KDACAVAYTGDGGTSEG 274 (364)
Q Consensus 202 ~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~-------~~~~vv~~~GDGa~~eG 274 (364)
+++|+|++|+.+++++|+++++|+.+++.++.+.+++||+++|+|+|+|+|.|+++ ++++|||++|||++++|
T Consensus 159 ~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG 238 (433)
T PLN02374 159 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNG 238 (433)
T ss_pred HHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccC
Confidence 99999999999999999999999999889999999999999999999999999875 48899999999999999
Q ss_pred cHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcE
Q 017890 275 DFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPV 354 (364)
Q Consensus 275 ~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~ 354 (364)
.|||+||+|+.|+|||||||+||+|+|+++...++..+++++++++||+++++|||+|+++|++++++|++++|++++|+
T Consensus 239 ~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~ 318 (433)
T PLN02374 239 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPT 318 (433)
T ss_pred hHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999988887778999999999999999999999999999999999999999999
Q ss_pred EEEEEeeccC
Q 017890 355 LVEVRLNFLW 364 (364)
Q Consensus 355 LIea~T~R~~ 364 (364)
|||++|||++
T Consensus 319 LIe~~tyR~~ 328 (433)
T PLN02374 319 LVECETYRFR 328 (433)
T ss_pred EEEEEEEecC
Confidence 9999999985
|
|
| >TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-57 Score=447.27 Aligned_cols=249 Identities=41% Similarity=0.602 Sum_probs=235.0
Q ss_pred CeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcCCCcEEEc
Q 017890 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILP 186 (364)
Q Consensus 107 ~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~~~D~v~~ 186 (364)
|+||||+.+|...+++..+.+++++++++|+.|+++|.||+++.++++||+|+|||+++||||++||++.+|+++|++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~ 80 (341)
T TIGR03181 1 ELVQVLDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFP 80 (341)
T ss_pred CceEEECCCCCcCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEc
Confidence 68999999999877665678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEe
Q 017890 187 QYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYT 266 (364)
Q Consensus 187 ~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~ 266 (364)
+||+|++++++|+++.++|++++|+.++ +.+ .++.|+++.+++||.++|+|+|+|+|.|+.+++++|||++
T Consensus 81 ~yR~h~~~l~~G~~~~~~~ae~~g~~~g----~~~-----~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~ 151 (341)
T TIGR03181 81 SYRDHAAMLARGVPLVEILLYWRGDERG----SWD-----PEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYF 151 (341)
T ss_pred chhhHHHHHHcCCCHHHHHHHhcCcCcC----CCC-----chhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEe
Confidence 9999999999999999999999998643 322 3568999999999999999999999999999999999999
Q ss_pred CCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHH
Q 017890 267 GDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREM 346 (364)
Q Consensus 267 GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ 346 (364)
|||++++|.+||+||+|+.++||+||||.||+|+++++...+....++++++++||+++++|||+|..+|++++++|+++
T Consensus 152 GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ 231 (341)
T TIGR03181 152 GDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVER 231 (341)
T ss_pred cCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998777777789999999999999999999999999999999999
Q ss_pred hhcCCCcEEEEEEeeccC
Q 017890 347 AISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 347 ar~~~~P~LIea~T~R~~ 364 (364)
++++++|+|||++|||++
T Consensus 232 a~~~~gP~lIev~t~R~~ 249 (341)
T TIGR03181 232 ARSGGGPTLIEAVTYRLG 249 (341)
T ss_pred HHcCCCCEEEEEEeecCC
Confidence 999999999999999975
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=433.29 Aligned_cols=230 Identities=43% Similarity=0.669 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccc-cccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCC
Q 017890 135 MYSHMVTLQVMDSVLYEAQRQGRFSF-YLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKA 213 (364)
Q Consensus 135 ly~~M~~~R~~D~~~~~~~rqGri~f-~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~ 213 (364)
+|+.|+++|.||+++.+++|||+++| ||++.||||++||++.+|+++||++++||+|++++++|++++++|.+++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 59999999999999999999999985 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEE
Q 017890 214 DDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFI 293 (364)
Q Consensus 214 ~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfV 293 (364)
|+++|+++++|+.+++.++++.+|+||+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+|++|+.+++|+|||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 294 CRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 294 V~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
|+||+|+++++...+....++++++++||+++++|||+|++++++++++|++++|++++|+|||++|||.+
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~ 231 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLG 231 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccC
Confidence 99999999999887777789999999999999999999999999999999999999999999999999974
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). |
| >PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-55 Score=429.83 Aligned_cols=228 Identities=43% Similarity=0.688 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCC
Q 017890 136 YSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADD 215 (364)
Q Consensus 136 y~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~ 215 (364)
|+.|+..|..|+++..+++||+.+|++++.||||++++++.+|+++||||++||+|+.+|++|++++++|.+++|+..+.
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~ 80 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGH 80 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTST
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEE
Q 017890 216 GKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR 295 (364)
Q Consensus 216 ~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~ 295 (364)
+.|++ +.|...++.++++.++++|.++|+|+|.|+|.|+++.+.+++|++|||++++|+|||+||+|+.|+|||||||+
T Consensus 81 ~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvve 159 (300)
T PF00676_consen 81 GGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVE 159 (300)
T ss_dssp TTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEe
Confidence 77777 88988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 296 NNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 296 NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
||+|+|||+..+++...+++++|++||+++++|||||+++|++++++|++++|++++|+|||++|||++
T Consensus 160 NN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~ 228 (300)
T PF00676_consen 160 NNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLR 228 (300)
T ss_dssp EESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS
T ss_pred cCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999985
|
Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A .... |
| >KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-53 Score=404.27 Aligned_cols=237 Identities=29% Similarity=0.489 Sum_probs=228.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHH
Q 017890 124 FQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQ 202 (364)
Q Consensus 124 ~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri-~f~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~ 202 (364)
...+++|+++++|++|+++|.||..+-.++.+++| +|+|.+.||||+.||+-+++++.|.|+.+||+|++.+.+|.++.
T Consensus 53 s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~ 132 (394)
T KOG0225|consen 53 SVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVR 132 (394)
T ss_pred eEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHH
Confidence 44789999999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHH
Q 017890 203 QFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNF 282 (364)
Q Consensus 203 ~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~ 282 (364)
++|.+++|+..|+++|.+.++|...+ +|++..|.+|.|+|.++|+|+|.|+++++.+++++.|||+.++|+++|++|+
T Consensus 133 ~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NM 210 (394)
T KOG0225|consen 133 EVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNM 210 (394)
T ss_pred HHHHHHhccccccccCCCcceeeecc--cccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhH
Confidence 99999999999999999999998865 4999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 283 AAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 283 Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
|+.|+||+||||+||.|++.|+..+....+++.+|+ .| +|+++|||+|+++|++|.+.|+++++++++|+|+|+.|||
T Consensus 211 A~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYR 288 (394)
T KOG0225|consen 211 AALWKLPVIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYR 288 (394)
T ss_pred HHHhCCCEEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeee
Confidence 999999999999999999999999888889999998 56 9999999999999999999999999999999999999999
Q ss_pred cC
Q 017890 363 LW 364 (364)
Q Consensus 363 ~~ 364 (364)
++
T Consensus 289 y~ 290 (394)
T KOG0225|consen 289 YH 290 (394)
T ss_pred ec
Confidence 75
|
|
| >cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=341.52 Aligned_cols=216 Identities=19% Similarity=0.197 Sum_probs=196.0
Q ss_pred HHHHHHHHHh-cCcccccccCCchhHHHHHHHhhcCC------CcEEEcc-CCchhHHHh--cCCCHHHHHHHHhcCCC-
Q 017890 145 MDSVLYEAQR-QGRFSFYLTTIGEEAINIGSAAALSA------DDFILPQ-YREPGVLLW--RGYTLQQFANQVFANKA- 213 (364)
Q Consensus 145 ~D~~~~~~~r-qGri~f~~~~~GqEa~~vg~a~aL~~------~D~v~~~-yR~~g~ll~--rG~~~~~~l~~~~g~~~- 213 (364)
||+.+...+. ++|. ++.|+|++++++...+++ +|+|+++ ||++..+|. +|++++++|.++.|+.+
T Consensus 1 ~e~f~~~~f~~~krf----s~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~ 76 (265)
T cd02016 1 FEQFLATKFPGQKRF----GLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEF 76 (265)
T ss_pred ChhhHHHhcCCCeEE----EecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCC
Confidence 4556655553 4443 489999999999999987 7999998 999999999 99999999999999877
Q ss_pred --CCCCCCCCccccCCCc-----------ccccccCCCcccchhHHHHHHHHhhhcc-----CCCeEEEEeCCCcc-ccc
Q 017890 214 --DDGKGRQMPIHYGSKK-----------LNYITISSPIATQLPQAVGVAYSLKMEK-----KDACAVAYTGDGGT-SEG 274 (364)
Q Consensus 214 --~~~~Gr~mp~H~~~~~-----------~~~~~~sg~LG~~lp~AvG~A~A~k~~~-----~~~~vv~~~GDGa~-~eG 274 (364)
+...++++..|++... ..+.+++|+||.++|+|+|+|+|.|+++ .+.++||++|||++ +||
T Consensus 77 ~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG 156 (265)
T cd02016 77 PEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQG 156 (265)
T ss_pred CCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCC
Confidence 4456889999997654 4578889999999999999999999987 47899999999996 699
Q ss_pred cHHHHHHHHHHcCCC---EEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCC
Q 017890 275 DFHAALNFAAVMEAP---VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEK 351 (364)
Q Consensus 275 ~~~EALn~Aa~~~LP---vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~ 351 (364)
.|||+||+|+.+++| +||||+||+|+++|+..++.+...++++|++||+++++|||+|+++|++++++|++++|+++
T Consensus 157 ~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~ 236 (265)
T cd02016 157 VVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFK 236 (265)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999998 99999999999999999898888999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeeccC
Q 017890 352 RPVLVEVRLNFLW 364 (364)
Q Consensus 352 ~P~LIea~T~R~~ 364 (364)
+|+|||++|||+|
T Consensus 237 gp~lIe~~tYR~~ 249 (265)
T cd02016 237 KDVVIDLVCYRRH 249 (265)
T ss_pred CCEEEEEEEecCC
Confidence 9999999999986
|
OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle. |
| >PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=374.16 Aligned_cols=236 Identities=14% Similarity=0.101 Sum_probs=210.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHh------hcCCCcEEEc-cCCchhHHHh--
Q 017890 126 QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAA------ALSADDFILP-QYREPGVLLW-- 196 (364)
Q Consensus 126 ~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~------aL~~~D~v~~-~yR~~g~ll~-- 196 (364)
.+++++++++|+.|+++|.||+++.+.+..+++. +..|||++++|+.. +++++|+|++ .||+|+..|+
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf---~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v 261 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRF---SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNV 261 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc---cccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHh
Confidence 7899999999999999999999999999888753 57999999999988 6668999999 6999999999
Q ss_pred cCCCHHHHHHHHhcCC--CCCCCCCCCccccCCCc-----cc-----ccccCCCcccchhHHHHHHHHhhhccCC-----
Q 017890 197 RGYTLQQFANQVFANK--ADDGKGRQMPIHYGSKK-----LN-----YITISSPIATQLPQAVGVAYSLKMEKKD----- 259 (364)
Q Consensus 197 rG~~~~~~l~~~~g~~--~~~~~Gr~mp~H~~~~~-----~~-----~~~~sg~LG~~lp~AvG~A~A~k~~~~~----- 259 (364)
+|++++++|++++|+. .+...++.+..|++... .+ ...+.|++|.+.|+|+|+|+|.|+++.+
T Consensus 262 ~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~ 341 (924)
T PRK09404 262 LGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRK 341 (924)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHHhcCCccccc
Confidence 5999999999999986 33333455666665432 11 1234689999999999999999998777
Q ss_pred -CeEEEEeCCCcc-ccccHHHHHHHHHHcCCC---EEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHH
Q 017890 260 -ACAVAYTGDGGT-SEGDFHAALNFAAVMEAP---VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDAL 334 (364)
Q Consensus 260 -~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LP---vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~ 334 (364)
.++||++|||++ ++|.|||+||+|+.|++| +||||+||+|+++|+..++.+...++++|++||+|+++|||+|++
T Consensus 342 ~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~ 421 (924)
T PRK09404 342 KVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPE 421 (924)
T ss_pred ceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHH
Confidence 799999999998 799999999999999997 999999999999999988877788999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 335 AVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 335 av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
+|++|++.|++++|++++|+|||++|||+|
T Consensus 422 AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~ 451 (924)
T PRK09404 422 AVVFATRLALEYRQKFKKDVVIDLVCYRRH 451 (924)
T ss_pred HHHHHHHHHHHHHHhcCcCEEEEEEEecCC
Confidence 999999999999999999999999999986
|
|
| >TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=334.06 Aligned_cols=237 Identities=18% Similarity=0.130 Sum_probs=210.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccccccCCchhHHHHHHHhh------cCCCcEEEcc-CCchhHHH
Q 017890 124 FQQVSKEVAVKMYSHMVTLQVMDSVLYEAQR-QGRFSFYLTTIGEEAINIGSAAA------LSADDFILPQ-YREPGVLL 195 (364)
Q Consensus 124 ~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~r-qGri~f~~~~~GqEa~~vg~a~a------L~~~D~v~~~-yR~~g~ll 195 (364)
...+++++.+++++.++.+..||+.+...+. |.|. +..|-|++..++-.. ...+|+|+++ ||++...|
T Consensus 183 ~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRF----slEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL 258 (929)
T TIGR00239 183 RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRF----SLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVL 258 (929)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCcee----ecccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHH
Confidence 4589999999999999999999999988774 6664 358999987766544 4578999998 99999999
Q ss_pred h--cCCCHHHHHHHHhcCCCCC-CCCCCCc-cccCC-----------CcccccccCCCcccchhHHHHHHHHhhhccC--
Q 017890 196 W--RGYTLQQFANQVFANKADD-GKGRQMP-IHYGS-----------KKLNYITISSPIATQLPQAVGVAYSLKMEKK-- 258 (364)
Q Consensus 196 ~--rG~~~~~~l~~~~g~~~~~-~~Gr~mp-~H~~~-----------~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~-- 258 (364)
+ +|++++++|+++.|+..+. +.|++.. .|++. ....+.++.|+|+.+.|+|+|.|+|.|+++.
T Consensus 259 ~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~ 338 (929)
T TIGR00239 259 VNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDS 338 (929)
T ss_pred HHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCc
Confidence 9 9999999999999987653 3467665 88884 2345788899999999999999999998765
Q ss_pred ----CCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCE---EEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeC
Q 017890 259 ----DACAVAYTGDGGT-SEGDFHAALNFAAVMEAPV---VFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG 330 (364)
Q Consensus 259 ----~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPv---IfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDG 330 (364)
+.++||++|||++ ++|.|||+||+|+.|++|+ ||||+||+|+++|+..++.+...++++|++||+|+++|||
T Consensus 339 ~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG 418 (929)
T TIGR00239 339 PESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNA 418 (929)
T ss_pred ccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheecCCCEEEECC
Confidence 5799999999997 8999999999999999997 9999999999999887777777899999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 331 NDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 331 nD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
+|+++|++|++.|++++|++++|+|||++|||+|
T Consensus 419 ~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~ 452 (929)
T TIGR00239 419 DDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRH 452 (929)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCC
Confidence 9999999999999999999999999999999986
|
The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase. |
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=291.41 Aligned_cols=221 Identities=16% Similarity=0.197 Sum_probs=183.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccccCCchhHHHHHHHhhcC---CCcEEE--ccCCchhHH
Q 017890 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS-FYLTTIGEEAINIGSAAALS---ADDFIL--PQYREPGVL 194 (364)
Q Consensus 121 ~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~-f~~~~~GqEa~~vg~a~aL~---~~D~v~--~~yR~~g~l 194 (364)
|.+...++.++|.++-.. +|.+ -++++++++ +++++.|+ +.++++.++. |+|+|+ +.||+|++.
T Consensus 9 p~d~~~l~~~~l~~l~~~---ir~~-----~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~ 78 (581)
T PRK12315 9 PADLKKLSLDELEQLASE---IRTA-----LLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHK 78 (581)
T ss_pred HHHHhhCCHHHHHHHHHH---HHHH-----HHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHH
Confidence 334556776666665442 4432 233445665 99999999 6666677777 899999 899999999
Q ss_pred HhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccc
Q 017890 195 LWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEG 274 (364)
Q Consensus 195 l~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG 274 (364)
+.+|.+++.++.+++|+.+++.+++. +.|. + ...|+.|+++|+|+|+|+|.|+++.+.+|||++|||++++|
T Consensus 79 l~~G~~~~~~~~~~~g~~~G~~~~~~-s~~~------~-~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG 150 (581)
T PRK12315 79 MLTGRKEAFLDPDHYDDVTGYTNPEE-SEHD------F-FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGG 150 (581)
T ss_pred HHcCCccchhhHHHcCCCCCCCCCCC-CCCC------C-cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcc
Confidence 99999999999999999988887766 2221 1 25688999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHcCCCEEEEEEcCCccccccccc---------ccCCccHHHHHhhcCeEEEEE-eCCCHHHHHHHHHHHH
Q 017890 275 DFHAALNFAAVMEAPVVFICRNNGWAISTNISE---------QFRSDGIVVKGRAYGIRSIRV-DGNDALAVYTAVQAAR 344 (364)
Q Consensus 275 ~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~---------~~~~~~ia~~a~a~G~~~~~V-DGnD~~av~~a~~~A~ 344 (364)
.+|||||+|+.|++|+||||+||+|++++++.. +....++.+++++|||++++| ||||++++++++++|+
T Consensus 151 ~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~ 230 (581)
T PRK12315 151 LALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVK 230 (581)
T ss_pred hHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999988742 223446778999999999998 9999999999999876
Q ss_pred HHhhcCCCcEEEEEEeecc
Q 017890 345 EMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 345 ~~ar~~~~P~LIea~T~R~ 363 (364)
+ .++|++||++|+|-
T Consensus 231 ~----~~gP~~i~~~T~kG 245 (581)
T PRK12315 231 D----IDHPIVLHIHTLKG 245 (581)
T ss_pred h----CCCCEEEEEEeecC
Confidence 4 67999999999984
|
|
| >COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=248.70 Aligned_cols=218 Identities=18% Similarity=0.203 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCc-hhHHHHHHHhhcC---------CCcEEEccCCchh------HHH
Q 017890 132 AVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIG-EEAINIGSAAALS---------ADDFILPQYREPG------VLL 195 (364)
Q Consensus 132 l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~G-qEa~~vg~a~aL~---------~~D~v~~~yR~~g------~ll 195 (364)
..++-+....+|.-.-+|...+.+|.. ..+.. -|-+++.....|+ ..|+++.+ .+|+ +|.
T Consensus 7 ~~~L~~~A~~iRr~~v~m~~~~~~GH~---G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLS-KGHaa~AlYa~La 82 (243)
T COG3959 7 VDELERIAREIRRNIVRMLANAGSGHV---GGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILS-KGHAAPALYATLA 82 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCc---CccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEe-cccchHHHHHHHH
Confidence 444555555677777666666666643 23332 2334444444432 24788876 4553 456
Q ss_pred hcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccc
Q 017890 196 WRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEG 274 (364)
Q Consensus 196 ~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG 274 (364)
.+|+.+++.+..+.. .|+.+|+|+...+ +++..++|+||++|++|+|+|++.|+++.+..|++++|||+++||
T Consensus 83 e~G~~p~eeL~~~~~------~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG 156 (243)
T COG3959 83 EKGYFPEEELETFRR------IGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEG 156 (243)
T ss_pred HcCCCCHHHHHHhcc------CCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccc
Confidence 699988888887643 5889999999855 588889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCc
Q 017890 275 DFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRP 353 (364)
Q Consensus 275 ~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P 353 (364)
++|||+.+|++++| ++|.||+-|+.|++..+++..+..++.+++++|||++++|||||++++++|+.++..- .++|
T Consensus 157 ~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~---~~rP 233 (243)
T COG3959 157 QVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS---KGRP 233 (243)
T ss_pred cHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhcc---CCCC
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999887652 4499
Q ss_pred EEEEEEeec
Q 017890 354 VLVEVRLNF 362 (364)
Q Consensus 354 ~LIea~T~R 362 (364)
.+|.|.|.+
T Consensus 234 ~~IIa~Tvk 242 (243)
T COG3959 234 TVIIAKTVK 242 (243)
T ss_pred eEEEEeccc
Confidence 999999975
|
|
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=253.73 Aligned_cols=170 Identities=25% Similarity=0.372 Sum_probs=145.2
Q ss_pred cEEEccCCchhH------HHhcCC--CHHHHHHHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHHH
Q 017890 182 DFILPQYREPGV------LLWRGY--TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYS 252 (364)
Q Consensus 182 D~v~~~yR~~g~------ll~rG~--~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~A 252 (364)
|.++.+ .+|+. +...|+ +.++ |.+|.. .|+.+++|+... .+++...+|+||+|++.|+|+|+|
T Consensus 58 DRfvlS-~GH~~~~lYa~l~~~G~~~~~e~-L~~fr~------~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA 129 (663)
T PRK12754 58 DRFVLS-NGHGSMLIYSLLHLTGYDLPMEE-LKNFRQ------LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIA 129 (663)
T ss_pred CeEEEe-CccHHHHHHHHHHHcCCCCCHHH-HHHhcc------CCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHH
Confidence 776655 34443 455786 5554 555542 477889999874 478888999999999999999999
Q ss_pred hhhcc----------CCCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 253 LKMEK----------KDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 253 ~k~~~----------~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
.|+.+ .+.+|+|++|||+++||.+|||+++|+.++|| +|+||+||+++|++++..+. .+++.+++++|
T Consensus 130 ~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~-~~~~~~r~~a~ 208 (663)
T PRK12754 130 EKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAY 208 (663)
T ss_pred HHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhcc-CccHHHHHHhc
Confidence 99875 37899999999999999999999999999997 79999999999999999886 58999999999
Q ss_pred CeEEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 322 GIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 322 G~~~~~-VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
||++++ |||||+++|++|+++|++. .++|++|+++|++-
T Consensus 209 Gw~vi~vvDG~D~~ai~~A~~~a~~~---~~~Pt~I~~~T~~g 248 (663)
T PRK12754 209 GWHVIRGIDGHDADSIKRAVEEARAV---TDKPSLLMCKTIIG 248 (663)
T ss_pred CCeEEeeECCCCHHHHHHHHHHHHhc---CCCCEEEEEEeeec
Confidence 999999 8999999999999888752 57899999999974
|
|
| >cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=219.09 Aligned_cols=164 Identities=21% Similarity=0.221 Sum_probs=135.3
Q ss_pred CCcEEEcc--CCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhc
Q 017890 180 ADDFILPQ--YREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKME 256 (364)
Q Consensus 180 ~~D~v~~~--yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~ 256 (364)
+.|.++.+ |...+.+...|. ++.+.++.. .|+ ++.|+...+ +++...+|++|+++|+|+|+|+|.|++
T Consensus 24 ~rDr~ils~gH~~~~~~~~~g~--~~~l~~~~~------~~~-~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~ 94 (195)
T cd02007 24 PKDKIIWDVGHQAYPHKILTGR--RDQFHTLRQ------YGG-LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDLK 94 (195)
T ss_pred CCCeEEEecccHHHHHHHHHCC--HHHHhhhhc------CCC-CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHHh
Confidence 46766665 333333444665 344555542 355 889987654 466778899999999999999999999
Q ss_pred cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEE-EeCCCHHH
Q 017890 257 KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIR-VDGNDALA 335 (364)
Q Consensus 257 ~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~-VDGnD~~a 335 (364)
+.+++|+|++|||+++||.+||++++|+.+++|+|+||+||+|++++++. ++.++++++||.+.. |||||+++
T Consensus 95 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~------~~~~~~~a~G~~~~~~vdG~d~~~ 168 (195)
T cd02007 95 GKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG------TPGNLFEELGFRYIGPVDGHNIEA 168 (195)
T ss_pred CCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCC------CHHHHHHhcCCCccceECCCCHHH
Confidence 99999999999999999999999999999988999999999999998765 477889999999996 99999999
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 336 VYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 336 v~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
+.+++++|++ .++|++|+++|++
T Consensus 169 l~~a~~~a~~----~~~P~~I~~~T~k 191 (195)
T cd02007 169 LIKVLKEVKD----LKGPVLLHVVTKK 191 (195)
T ss_pred HHHHHHHHHh----CCCCEEEEEEEec
Confidence 9999988764 5799999999975
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). |
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-27 Score=251.23 Aligned_cols=171 Identities=23% Similarity=0.332 Sum_probs=143.6
Q ss_pred cEEEccCCchh------HHHhcCCC-HHHHHHHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHHHh
Q 017890 182 DFILPQYREPG------VLLWRGYT-LQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSL 253 (364)
Q Consensus 182 D~v~~~yR~~g------~ll~rG~~-~~~~l~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~A~ 253 (364)
|.++.+ .+|+ ++...|+. ..+-|.++.. .|+.+++||... .+++...+|+||+++++|+|+|+|.
T Consensus 54 DrfvlS-~GH~~~~lYa~l~~~G~~~~~e~L~~fr~------~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~ 126 (653)
T TIGR00232 54 DRFVLS-NGHGSMLLYSLLHLTGYDLSIEDLKQFRQ------LHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQ 126 (653)
T ss_pred CeEEEE-CccHHHHHHHHHHHcCCCCCHHHHHhccc------CCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHH
Confidence 765554 3443 35557963 4444556543 477889999873 4688888999999999999999999
Q ss_pred hhcc----------CCCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcC
Q 017890 254 KMEK----------KDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (364)
Q Consensus 254 k~~~----------~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G 322 (364)
|+.+ .+.+|+|++|||+++||.+|||+++|+.++|| +|+||+||+|+|++++.++. .+++++++++||
T Consensus 127 k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~~~a~G 205 (653)
T TIGR00232 127 KTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDVAKRFEAYG 205 (653)
T ss_pred HHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeeecccccccc-CccHHHHHHhcC
Confidence 9863 37789999999999999999999999999997 88999999999999998886 689999999999
Q ss_pred eEEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 323 IRSIRV-DGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 323 ~~~~~V-DGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
|++++| ||||++++++|+++|++ ..++|++|+++|+|-
T Consensus 206 w~~~~v~DG~D~~ai~~A~~~a~~---~~~~P~~I~~~T~~g 244 (653)
T TIGR00232 206 WEVLEVEDGHDLAAIDAAIEEAKA---SKDKPTLIEVTTTIG 244 (653)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHh---CCCCCEEEEEEeeec
Confidence 999999 99999999999987754 124899999999984
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-27 Score=222.61 Aligned_cols=162 Identities=23% Similarity=0.283 Sum_probs=141.8
Q ss_pred HHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcc-cccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc
Q 017890 193 VLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKL-NYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT 271 (364)
Q Consensus 193 ~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~-~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~ 271 (364)
++...|+..++.+..+.. .|+.++.|+....+ ++...+|+||+++|.|+|+|+|.|+.+++++|+|++|||++
T Consensus 66 ~l~~~g~~~~~~l~~~~~------~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~ 139 (255)
T cd02012 66 VLALAGYLPEEDLKTFRQ------LGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGEL 139 (255)
T ss_pred HHHHcCCCCHHHHHHhcc------cCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccc
Confidence 455678766666666542 46778999887554 77888899999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcC
Q 017890 272 SEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISE 350 (364)
Q Consensus 272 ~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~ 350 (364)
+||.+||++++|+.++|| +|+|++||+|+++.++.......++++++++|||++++|||||++++++++++|++. .
T Consensus 140 ~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~---~ 216 (255)
T cd02012 140 QEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS---K 216 (255)
T ss_pred cccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc---C
Confidence 999999999999999995 899999999999988777777789999999999999999999999999999988752 2
Q ss_pred CCcEEEEEEeecc
Q 017890 351 KRPVLVEVRLNFL 363 (364)
Q Consensus 351 ~~P~LIea~T~R~ 363 (364)
++|++|+++|.+-
T Consensus 217 ~~P~~I~~~t~kg 229 (255)
T cd02012 217 GKPTLIIAKTIKG 229 (255)
T ss_pred CCCEEEEEEeecc
Confidence 7899999999874
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. |
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=246.05 Aligned_cols=172 Identities=22% Similarity=0.275 Sum_probs=143.9
Q ss_pred CcEEEcc--CCc---hhHHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHHHh
Q 017890 181 DDFILPQ--YRE---PGVLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSL 253 (364)
Q Consensus 181 ~D~v~~~--yR~---~g~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~A~ 253 (364)
.|.++.+ |.. .+++...|+ ...+.|.+++. .|+.+++|+... .+++...+|++|++++.|+|+|+|.
T Consensus 57 rDrfvls~GH~~~~lYa~l~~~G~~~~~e~L~~fr~------~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~ 130 (663)
T PRK12753 57 RDRFILSNGHASMLLYSLLHLTGYDLPIEELKNFRQ------LHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAE 130 (663)
T ss_pred CCcEEEecccHHHHHHHHHHHhCCCCCHHHHHHhcc------CCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHH
Confidence 3765554 333 234566785 34455666643 477789999764 4688889999999999999999999
Q ss_pred hhccC----------CCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcC
Q 017890 254 KMEKK----------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (364)
Q Consensus 254 k~~~~----------~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G 322 (364)
|+.+. +.+|+|++|||+++||.+|||+++|+.++|| +|+||+||+++|++++.... .+++.+++++||
T Consensus 131 k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~f~a~G 209 (663)
T PRK12753 131 RTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWF-TDDTAKRFEAYH 209 (663)
T ss_pred HHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhc-ChhHHHHHHHcC
Confidence 98652 6899999999999999999999999999995 89999999999999998766 578999999999
Q ss_pred eEEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 323 IRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 323 ~~~~~-VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
|+++. |||||+++|++|+++|.+ ..++|++|+++|++
T Consensus 210 w~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~k 247 (663)
T PRK12753 210 WHVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTII 247 (663)
T ss_pred CeEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEee
Confidence 99995 999999999999998875 25789999999986
|
|
| >PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=231.02 Aligned_cols=171 Identities=27% Similarity=0.358 Sum_probs=135.0
Q ss_pred CcEEEccCCchh------HHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCC-CcccccccCCCcccchhHHHHHHHH
Q 017890 181 DDFILPQYREPG------VLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGS-KKLNYITISSPIATQLPQAVGVAYS 252 (364)
Q Consensus 181 ~D~v~~~yR~~g------~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~-~~~~~~~~sg~LG~~lp~AvG~A~A 252 (364)
.|.++.+ .+|+ ++..+|+ ...+.|.++.. .|+.+++||.. ..+++...+||||++++.|+|+|+|
T Consensus 54 rDrfvlS-kGH~~~~lYa~l~~~G~~~~~~~L~~fr~------~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala 126 (332)
T PF00456_consen 54 RDRFVLS-KGHASPALYAILALRGYDLSEEDLKTFRQ------LGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALA 126 (332)
T ss_dssp S-EEEES-SGGGHHHHHHHHHHTTSSS-HHHHTTTTS------TTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHH
T ss_pred CCcEEEe-ccchhHHHHHHHHHhcCCCCHHHHHHhcc------CCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHH
Confidence 4876666 4554 3444787 55566666552 58889999984 4578888999999999999999999
Q ss_pred hhhcc----------CCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 253 LKMEK----------KDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 253 ~k~~~----------~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
.|+.+ -+.+|+|++|||+++||..|||+.+|+.++| ++|+|+++|+.++++++.... .+++.+++++|
T Consensus 127 ~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~-~~~~~~k~~a~ 205 (332)
T PF00456_consen 127 EKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVF-SEDIAKKFEAF 205 (332)
T ss_dssp HHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTH-HSHHHHHHHHT
T ss_pred HHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCcccCCCccccc-chHHHHHHHHh
Confidence 98742 2578999999999999999999999999999 899999999999999987654 46899999999
Q ss_pred CeEEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 322 GIRSIRV-DGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 322 G~~~~~V-DGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
||.+++| ||||+++|++|+++|.. ..++|++|.++|..
T Consensus 206 Gw~v~~v~dGhd~~~i~~A~~~a~~---~~~kP~~Ii~~Tvk 244 (332)
T PF00456_consen 206 GWNVIEVCDGHDVEAIYAAIEEAKA---SKGKPTVIIARTVK 244 (332)
T ss_dssp T-EEEEEEETTBHHHHHHHHHHHHH---STSS-EEEEEEE-T
T ss_pred hhhhcccccCcHHHHHHHHHHHHHh---cCCCCceeecceEE
Confidence 9999998 99999999999999875 34799999999974
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A .... |
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-26 Score=240.50 Aligned_cols=174 Identities=23% Similarity=0.299 Sum_probs=144.9
Q ss_pred CCcEEEcc--CCc---hhHHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHHH
Q 017890 180 ADDFILPQ--YRE---PGVLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYS 252 (364)
Q Consensus 180 ~~D~v~~~--yR~---~g~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~A 252 (364)
+.|.++.+ |.. .+++...|+ ...+-+.++.. .|+.++.|+... .+++...+|++|++++.|+|+|+|
T Consensus 58 ~rDr~vls~GH~~~~lYa~l~l~G~~~~~~~l~~fr~------~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a 131 (661)
T PTZ00089 58 NRDRFVLSNGHASALLYSMLHLTGYDLSMEDLKNFRQ------LGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIA 131 (661)
T ss_pred CCCEEEEeCcchHHHHHHHHHHcCCCCCHHHHHhcCC------CCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHH
Confidence 34875554 444 344666785 44455666543 466778898764 367888899999999999999999
Q ss_pred hhhccC----------CCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 253 LKMEKK----------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 253 ~k~~~~----------~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
.|+.+. +.+|+|++|||+++||.+|||+|+|+.++|| +|+||+||+++|++++..+. .+++.+++++|
T Consensus 132 ~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~ 210 (661)
T PTZ00089 132 EKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSF-TEDVEKKYEAY 210 (661)
T ss_pred HHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCccccc-CccHHHHHHhc
Confidence 998653 7899999999999999999999999999995 89999999999999988654 57899999999
Q ss_pred CeEEEEE-eCC-CHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 322 GIRSIRV-DGN-DALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 322 G~~~~~V-DGn-D~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
||+++.| ||| |++++++|+++|++. .++|++|+++|+|-
T Consensus 211 G~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG 251 (661)
T PTZ00089 211 GWHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIG 251 (661)
T ss_pred CCcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeec
Confidence 9999999 999 999999999988763 36899999999974
|
|
| >PLN02790 transketolase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=238.98 Aligned_cols=174 Identities=21% Similarity=0.254 Sum_probs=144.3
Q ss_pred CCcEEEcc--CCc---hhHHHhcCC--CHHHHHHHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHH
Q 017890 180 ADDFILPQ--YRE---PGVLLWRGY--TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAY 251 (364)
Q Consensus 180 ~~D~v~~~--yR~---~g~ll~rG~--~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~ 251 (364)
+.|.++.+ |-. .+++...|+ ...+-|..+.. .|+..|+|+... .+++...+|++|++++.|+|+|+
T Consensus 46 ~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~~r~------~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~ 119 (654)
T PLN02790 46 NRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQFRQ------WGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLAL 119 (654)
T ss_pred CCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHHhcc------CCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHH
Confidence 45877764 444 344666887 23344556643 477788998764 37888899999999999999999
Q ss_pred Hhhh-----ccC-----CCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhh
Q 017890 252 SLKM-----EKK-----DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 252 A~k~-----~~~-----~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a 320 (364)
|.|+ +++ +.+|+|++|||+++||.+|||+|+|+.++|| +|+||+||+++|++++..+. .+++.+++++
T Consensus 120 A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a 198 (654)
T PLN02790 120 AEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGDTEIAF-TEDVDKRYEA 198 (654)
T ss_pred HHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccccCCccccc-chhHHHHHHH
Confidence 9995 332 6899999999999999999999999999996 89999999999999988654 5789999999
Q ss_pred cCeEEEEEeC--CCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 321 YGIRSIRVDG--NDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 321 ~G~~~~~VDG--nD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
|||+++.||| ||++++++|+++|++. .++|++|+++|++-
T Consensus 199 ~G~~~~~vdgg~hd~~~l~~a~~~a~~~---~~~P~lI~~~T~kG 240 (654)
T PLN02790 199 LGWHTIWVKNGNTDYDEIRAAIKEAKAV---TDKPTLIKVTTTIG 240 (654)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhc---CCCeEEEEEEEeec
Confidence 9999999988 8999999999888752 57999999999873
|
|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=236.93 Aligned_cols=234 Identities=20% Similarity=0.233 Sum_probs=170.3
Q ss_pred CeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC-CCcEEE
Q 017890 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFIL 185 (364)
Q Consensus 107 ~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~ 185 (364)
|+|.+|+ ++-++.+..+++.+++.++-. -++...+|.. .. ..|.++- +.|-=-+.+..-..++ +.|.++
T Consensus 2 ~~~~~~~---~~~~~~~~~~~~~~~l~~~a~-~iR~~~~~~~--~~-~~gH~g~---~ls~~~i~~~L~~~~~~~rDr~i 71 (580)
T PRK05444 2 PKYPLLD---TINSPADLKKLSEEELPQLAD-EIREFLIDVV--SK-TGGHLGS---NLGVVELTVALHYVFDTPKDRII 71 (580)
T ss_pred CCCchhh---ccCCHHHHhcCCHHHHHHHHH-HHHHHHHHHH--Hh-cCCCcCC---CccHHHHHHHHHHhcCCCCccEE
Confidence 4455555 333455566888877766533 3444455543 22 3565543 3332222223333343 568766
Q ss_pred cc--CCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhc-cCCCe
Q 017890 186 PQ--YREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKME-KKDAC 261 (364)
Q Consensus 186 ~~--yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~-~~~~~ 261 (364)
.+ |...+++...|. . +.+..+.. .|+ +++|+...+ +++...+|++|+++|+|+|+|+|.|++ +++++
T Consensus 72 ls~GH~~y~~~~~~g~-~-~~l~~~~~------~~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~ 142 (580)
T PRK05444 72 WDVGHQAYPHKILTGR-R-DRFDTLRQ------KGG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRK 142 (580)
T ss_pred EeccHHHHHHHHHhCc-H-HHhcCccc------CCC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCe
Confidence 65 333344555776 2 33444432 355 788988754 678888999999999999999999998 58899
Q ss_pred EEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccc---cCCccHHHHHhhcCeEEE-EEeCCCHHHHH
Q 017890 262 AVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQ---FRSDGIVVKGRAYGIRSI-RVDGNDALAVY 337 (364)
Q Consensus 262 vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~---~~~~~ia~~a~a~G~~~~-~VDGnD~~av~ 337 (364)
|+|++|||+++||.+||++++|+.+++|+|+|++||+|++++++..+ ....++.+++++|||+++ .|||||+++++
T Consensus 143 v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~ 222 (580)
T PRK05444 143 VVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALI 222 (580)
T ss_pred EEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHH
Confidence 99999999999999999999999999999999999999999887644 234667789999999999 58999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 338 TAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 338 ~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
++++++++ .++|++|++.|.+-
T Consensus 223 ~al~~a~~----~~~P~lI~~~T~kg 244 (580)
T PRK05444 223 ETLKNAKD----LKGPVLLHVVTKKG 244 (580)
T ss_pred HHHHHHHh----CCCCEEEEEEecCC
Confidence 99987764 57999999999873
|
|
| >cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-25 Score=219.55 Aligned_cols=171 Identities=16% Similarity=0.115 Sum_probs=143.6
Q ss_pred CcEEEccCCchh------HHHhcCCCHHHHHHHHhcCCCCCCCCC--CCccccCCCc-c-cccccCCCcccchhHHHHHH
Q 017890 181 DDFILPQYREPG------VLLWRGYTLQQFANQVFANKADDGKGR--QMPIHYGSKK-L-NYITISSPIATQLPQAVGVA 250 (364)
Q Consensus 181 ~D~v~~~yR~~g------~ll~rG~~~~~~l~~~~g~~~~~~~Gr--~mp~H~~~~~-~-~~~~~sg~LG~~lp~AvG~A 250 (364)
.|.|+. .+|+ ++...|+.+.+-|..+.. .|+ .++.|+...+ + ++...+|+||+++++|+|+|
T Consensus 60 RDRvlS--kGHas~~lYA~L~l~G~~~~edL~~fr~------~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmA 131 (386)
T cd02017 60 GDLVYF--QGHASPGIYARAFLEGRLTEEQLDNFRQ------EVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQA 131 (386)
T ss_pred CCEEEe--CCcccHHHHHHHHHcCCCCHHHHHhhcc------CCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHH
Confidence 688664 4554 466689655556777653 344 5777775533 3 47888999999999999999
Q ss_pred HHhhh-------ccCCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccc-cCCccHHHHHhhc
Q 017890 251 YSLKM-------EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQ-FRSDGIVVKGRAY 321 (364)
Q Consensus 251 ~A~k~-------~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~-~~~~~ia~~a~a~ 321 (364)
+|.|+ ++.+.+|+|++|||+++||.+|||+++|+.++| ++|+||++|+++++.++... ...+++.+++++|
T Consensus 132 la~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e~l~~kf~Af 211 (386)
T cd02017 132 RFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGA 211 (386)
T ss_pred HHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCchhHHHHHHhc
Confidence 99997 556789999999999999999999999999999 99999999999999999886 3668999999999
Q ss_pred CeEEEEEe---------------------------------------------------------------------CCC
Q 017890 322 GIRSIRVD---------------------------------------------------------------------GND 332 (364)
Q Consensus 322 G~~~~~VD---------------------------------------------------------------------GnD 332 (364)
||.+++|| |||
T Consensus 212 GW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~~~~~~gGhD 291 (386)
T cd02017 212 GWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHD 291 (386)
T ss_pred CCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhccCCCC
Confidence 99999998 999
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 333 ALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 333 ~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
+.+|++|+.++.+. .++|++|.|.|..
T Consensus 292 ~~~i~~A~~~a~~~---~~kPt~Iia~Tik 318 (386)
T cd02017 292 PRKVYAAYKKAVEH---KGKPTVILAKTIK 318 (386)
T ss_pred HHHHHHHHHHHHhC---CCCCeEEEEeCee
Confidence 99999999988752 4689999999974
|
coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme. |
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-25 Score=233.08 Aligned_cols=222 Identities=18% Similarity=0.244 Sum_probs=165.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC-CCcEEEcc--CCchhHHHhc
Q 017890 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQ--YREPGVLLWR 197 (364)
Q Consensus 121 ~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~~~--yR~~g~ll~r 197 (364)
|.+...++.+++.++-.. ++.+.++.. . ...|.+ .++.|-=-+.++....++ +.|.++.+ |...++++..
T Consensus 7 p~dl~~l~~~~l~~la~~-iR~~~i~~~--~-~~~GH~---g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~ 79 (617)
T TIGR00204 7 PQELRLLSIDELEKLCDE-LRRYLLESV--S-ASGGHL---ASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLT 79 (617)
T ss_pred HHHHhhCCHHHHHHHHHH-HHHHHHHHH--h-ccCCCc---CcchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHh
Confidence 344557777776665443 344444432 2 234443 345554444445555566 67877664 5555667778
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCccccCCCccccc-ccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccH
Q 017890 198 GYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYI-TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF 276 (364)
Q Consensus 198 G~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~-~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~ 276 (364)
|+ . +.|..+.. .|+ +++|+...+.++. ..+|++|+++++|+|+|+|.|+++.+.+|+|++|||+++||.+
T Consensus 80 G~-~-~~l~~~r~------~g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~ 150 (617)
T TIGR00204 80 GR-R-EKFSTLRQ------KKG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMA 150 (617)
T ss_pred Cc-H-HHhcchhh------cCC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccH
Confidence 87 2 44555542 355 8899877666555 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCcccccccccccC------------------------Cc---c-HHHH-----------
Q 017890 277 HAALNFAAVMEAPVVFICRNNGWAISTNISEQFR------------------------SD---G-IVVK----------- 317 (364)
Q Consensus 277 ~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~------------------------~~---~-ia~~----------- 317 (364)
|||+|+|+.++||+|+||+||++++++++..+.. .+ + ++++
T Consensus 151 ~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 230 (617)
T TIGR00204 151 FEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVP 230 (617)
T ss_pred HHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCc
Confidence 9999999999999999999999999988753311 01 1 4444
Q ss_pred ---HhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 318 ---GRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 318 ---a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
+++|||.++ .|||||++++.++++.+++ .++|++|+++|.+
T Consensus 231 ~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~----~~~P~~i~~~T~K 275 (617)
T TIGR00204 231 GTFFEELGFNYIGPVDGHDLLELIETLKNAKK----LKGPVFLHIQTKK 275 (617)
T ss_pred cchHHHcCCcEEcccCCCCHHHHHHHHHHHhc----CCCCEEEEEEecC
Confidence 899999999 8999999999999987664 5789999999986
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=229.29 Aligned_cols=173 Identities=23% Similarity=0.269 Sum_probs=143.1
Q ss_pred CcEEEcc--CCc---hhHHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHh
Q 017890 181 DDFILPQ--YRE---PGVLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSL 253 (364)
Q Consensus 181 ~D~v~~~--yR~---~g~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~ 253 (364)
.|.++.+ |-. .+++...|+ -.++-+..+.. .|..++.|+...+ +++...+|+||+++|.|+|+|+|.
T Consensus 61 ~Dr~i~s~GH~~~~~Ya~l~~~G~~~~~~~l~~~~~------~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~ 134 (624)
T PRK05899 61 RDRFVLSAGHGSMLLYSLLHLAGYDLSIDDLKNFRQ------LGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAE 134 (624)
T ss_pred CCEEEEEChhHHHHHHHHHHHcCCCCCHHHHHHhcC------CCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHH
Confidence 4877654 333 234666897 44555555532 3556788887643 567778999999999999999999
Q ss_pred hhccC----------CCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcC
Q 017890 254 KMEKK----------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (364)
Q Consensus 254 k~~~~----------~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G 322 (364)
++++. +++|+|++|||+++||.+|||+++|+.++|| +|+|++||+|++++++... ...++++++++||
T Consensus 135 ~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~-~~~~~~~~~~a~G 213 (624)
T PRK05899 135 KYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGW-FTEDVKKRFEAYG 213 (624)
T ss_pred HHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccccccccc-ccccHHHHhccCC
Confidence 98776 7899999999999999999999999999996 8999999999999887743 3578999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 323 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 323 ~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
|++++|||||++++.+++++|++ .++|++|+++|+|-+
T Consensus 214 ~~~~~VdG~d~~~l~~al~~a~~----~~~P~vI~v~t~kg~ 251 (624)
T PRK05899 214 WHVIEVDGHDVEAIDAAIEEAKA----STKPTLIIAKTIIGK 251 (624)
T ss_pred CeEEEECCCCHHHHHHHHHHHHh----cCCCEEEEEEeEecc
Confidence 99999999999999999998875 368999999998853
|
|
| >cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-25 Score=208.09 Aligned_cols=166 Identities=20% Similarity=0.278 Sum_probs=143.8
Q ss_pred CchhHHHHHHHhhcCC-CcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccch
Q 017890 165 IGEEAINIGSAAALSA-DDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQL 243 (364)
Q Consensus 165 ~GqEa~~vg~a~aL~~-~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~l 243 (364)
.||++.++.+..+|.. .|++|+.||... .| +++++.++. . .|. +++|+....+++...+|+||++|
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~----~g--l~~lf~qfs-~-----~gg-~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDE----EG--MRKLFKQFS-F-----PGG-IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccH----HH--HHHHHHhcC-C-----CCC-CCCCCcccCCCeeecccchhhHH
Confidence 6999999999889987 599999999765 22 256777762 1 233 99999887789999999999999
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccH---HHHHHHHHHcCC-CEEEEEEcCCcccccccccc-cCCccHHHHH
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF---HAALNFAAVMEA-PVVFICRNNGWAISTNISEQ-FRSDGIVVKG 318 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~---~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~-~~~~~ia~~a 318 (364)
++|+|+|+ ++++.+|+|++|||++++|.+ |++.+++..+++ .|+.|++||+|+|++++... .+.+++++++
T Consensus 69 s~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~ 144 (227)
T cd02011 69 SHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALF 144 (227)
T ss_pred HHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHH
Confidence 99999974 578899999999999999996 898899999999 78999999999999999865 5578999999
Q ss_pred hhcCeEEEEEeCCCHHHHHHHHHHHHHHh
Q 017890 319 RAYGIRSIRVDGNDALAVYTAVQAAREMA 347 (364)
Q Consensus 319 ~a~G~~~~~VDGnD~~av~~a~~~A~~~a 347 (364)
++|||+++.|||||+++|++++++|+++|
T Consensus 145 ~~yG~~~~~VDG~D~~av~~~~a~a~~~~ 173 (227)
T cd02011 145 RGYGYEPYFVEGDDPETMHQAMAATLDWA 173 (227)
T ss_pred HhCCCceEEECCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887644
|
This enzyme requires divalent magnesium ions and TPP for activity. |
| >TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-23 Score=222.55 Aligned_cols=223 Identities=17% Similarity=0.192 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCcccccccCCchhHHHHHHHhhcCC------CcEEEccCCchh------
Q 017890 129 KEVAVKMYSHMVTLQVMDSVLYEAQR----QGRFSFYLTTIGEEAINIGSAAALSA------DDFILPQYREPG------ 192 (364)
Q Consensus 129 ~e~l~~ly~~M~~~R~~D~~~~~~~r----qGri~f~~~~~GqEa~~vg~a~aL~~------~D~v~~~yR~~g------ 192 (364)
+.++.+..+..++-..++........ .|.++-++++ -|...++....|+. +|.|+.+ +|+
T Consensus 71 d~~~e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~--adIl~vLy~~~lr~~~~~~~rD~VlSK--GHasp~lYA 146 (885)
T TIGR00759 71 DLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASA--ATLYEVGFNHFFRGHSEGGGGDLVFFQ--GHAAPGIYA 146 (885)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHH--HHHHHHHHHHhcCCCCCCCCCCEEEEC--CcHHHHHHH
Confidence 33455555555555565544222111 2444433333 23344444445653 6887774 443
Q ss_pred HHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-cc-ccccCCCcccchhHHHHHHHHhhh-------ccCCCeEE
Q 017890 193 VLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LN-YITISSPIATQLPQAVGVAYSLKM-------EKKDACAV 263 (364)
Q Consensus 193 ~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~-~~~~sg~LG~~lp~AvG~A~A~k~-------~~~~~~vv 263 (364)
++...|+..++-|..|.. .. .|.+++.|+.... ++ +...+|+||.++++|+|.|++.|+ +..+.+|+
T Consensus 147 ~L~l~G~ls~e~L~~FRq-~~---~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVy 222 (885)
T TIGR00759 147 RAFLEGRLTEEQLDNFRQ-EV---QGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVW 222 (885)
T ss_pred HHHHcCCCCHHHHHHhcC-CC---CCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEE
Confidence 355589766777777653 21 2667888776533 44 778899999999999999999996 56778999
Q ss_pred EEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CccHHHHHhhcCeEEEEE-------------
Q 017890 264 AYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGIRSIRV------------- 328 (364)
Q Consensus 264 ~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~-~~~ia~~a~a~G~~~~~V------------- 328 (364)
|++|||+++||..|||+.+|+.++| ++|+||++|+.++++++..... .+++.++++++||.+++|
T Consensus 223 vllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d 302 (885)
T TIGR00759 223 AFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARD 302 (885)
T ss_pred EEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCC
Confidence 9999999999999999999999999 9999999999999999987644 578999999999999999
Q ss_pred --------------------------------------------------------eCCCHHHHHHHHHHHHHHhhcCCC
Q 017890 329 --------------------------------------------------------DGNDALAVYTAVQAAREMAISEKR 352 (364)
Q Consensus 329 --------------------------------------------------------DGnD~~av~~a~~~A~~~ar~~~~ 352 (364)
+|||+.+|++|+++|.+. .++
T Consensus 303 ~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~---~gr 379 (885)
T TIGR00759 303 TSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEH---KGQ 379 (885)
T ss_pred CccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhC---CCC
Confidence 599999999999988763 458
Q ss_pred cEEEEEEeec
Q 017890 353 PVLVEVRLNF 362 (364)
Q Consensus 353 P~LIea~T~R 362 (364)
|++|.++|..
T Consensus 380 PTvIlA~TvK 389 (885)
T TIGR00759 380 PTVILAKTIK 389 (885)
T ss_pred CEEEEEeeee
Confidence 9999999975
|
WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. |
| >TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=219.71 Aligned_cols=222 Identities=18% Similarity=0.184 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----cCcccccccCCchhHHHHHHHhhcCC------CcEEEccC-Cchh---HHHh
Q 017890 131 VAVKMYSHMVTLQVMDSVLYEAQR----QGRFSFYLTTIGEEAINIGSAAALSA------DDFILPQY-REPG---VLLW 196 (364)
Q Consensus 131 ~l~~ly~~M~~~R~~D~~~~~~~r----qGri~f~~~~~GqEa~~vg~a~aL~~------~D~v~~~y-R~~g---~ll~ 196 (364)
++.+-....++...++........ .|.++-++++ -|...+.....|+. +|.|+.+- -..+ ++..
T Consensus 73 ~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~--a~i~~vLy~~~lr~~~~~~~rD~VlskGHasp~lYA~l~l 150 (889)
T TIGR03186 73 QLEERLAAILRWNALAMVVRANRAYGELGGHIASYASA--ADLFEVGFNHFFRAAGDASGGDLVYFQPHSAPGVYARAFL 150 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHH--HHHHHHHHHHhCCCCCCCCCCCEEEECCchHHHHHHHHHH
Confidence 344555555555666554222111 2444433333 33444455455663 68877763 2222 3445
Q ss_pred cCCCHHHHHHHHhcCCCCCCCCCCCcc--ccCCCcc-cccccCCCcccchhHHHHHHHHhhhc-------cCCCeEEEEe
Q 017890 197 RGYTLQQFANQVFANKADDGKGRQMPI--HYGSKKL-NYITISSPIATQLPQAVGVAYSLKME-------KKDACAVAYT 266 (364)
Q Consensus 197 rG~~~~~~l~~~~g~~~~~~~Gr~mp~--H~~~~~~-~~~~~sg~LG~~lp~AvG~A~A~k~~-------~~~~~vv~~~ 266 (364)
.|+..++-|.+|+... .|++++. |+.. .+ .+...+|+||.+++.|+|+|++.|+. ..+.+|+|++
T Consensus 151 ~G~l~~e~L~~fRq~~----~~~gl~~~phP~~-~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~ll 225 (889)
T TIGR03186 151 EGFLSDAQLAHYRQEI----AGPGLCSYPHPWL-MPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFF 225 (889)
T ss_pred cCCCCHHHHHHhcCCC----CCCCCCCCCCccc-CCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEE
Confidence 7976666677765321 1445555 4443 24 37778999999999999999998842 2368999999
Q ss_pred CCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CccHHHHHhhcCeEEEEE----------------
Q 017890 267 GDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGIRSIRV---------------- 328 (364)
Q Consensus 267 GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~-~~~ia~~a~a~G~~~~~V---------------- 328 (364)
|||+++||..|||+.+|+.++| ++|+||++|+.++++++..... .+++.+++++|||++++|
T Consensus 226 GDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~ 305 (889)
T TIGR03186 226 GDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATG 305 (889)
T ss_pred cchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccch
Confidence 9999999999999999999999 9999999999999999987444 578999999999999999
Q ss_pred -----------------------------------------------------eCCCHHHHHHHHHHHHHHhhcCCCcEE
Q 017890 329 -----------------------------------------------------DGNDALAVYTAVQAAREMAISEKRPVL 355 (364)
Q Consensus 329 -----------------------------------------------------DGnD~~av~~a~~~A~~~ar~~~~P~L 355 (364)
+|||+.+|++|+++|.+. .++|++
T Consensus 306 ~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~---~~~PTv 382 (889)
T TIGR03186 306 ALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH---EGRPTV 382 (889)
T ss_pred HHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCEE
Confidence 699999999999998863 469999
Q ss_pred EEEEeec
Q 017890 356 VEVRLNF 362 (364)
Q Consensus 356 Iea~T~R 362 (364)
|.++|..
T Consensus 383 Ila~Tvk 389 (889)
T TIGR03186 383 ILAKTMK 389 (889)
T ss_pred EEEEeee
Confidence 9999974
|
Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component. |
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-23 Score=218.73 Aligned_cols=234 Identities=20% Similarity=0.232 Sum_probs=163.8
Q ss_pred CeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC-CCcEEE
Q 017890 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFIL 185 (364)
Q Consensus 107 ~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~ 185 (364)
|.|.+|+ ++-.|.+..+++.+++.++-.. ++.+.+|.... ..|.++ ++.|-=-+.++....++ |.|.++
T Consensus 4 ~~~~~l~---~i~~p~dl~~l~~~~l~~~a~~-iR~~ii~~~~~---~~GH~g---~~ls~vel~~aL~~~~~~prDr~i 73 (641)
T PRK12571 4 PKTPLLD---RIKGPADLRALSDAELEQLADE-LRAEVISAVSE---TGGHLG---SSLGVVELTVALHAVFNTPKDKLV 73 (641)
T ss_pred CCCChhh---hcCCHHHHHhCCHHHHHHHHHH-HHHHHHHHHHH---hCCCcC---CCchHHHHHHHHHHhcCCCCCcEE
Confidence 3344555 3444555668888777766333 44445554421 135543 44444334444444444 678776
Q ss_pred cc--CCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcc-cccccCCCcccchhHHHHHHHHhhhccCCCeE
Q 017890 186 PQ--YREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKL-NYITISSPIATQLPQAVGVAYSLKMEKKDACA 262 (364)
Q Consensus 186 ~~--yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~-~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~v 262 (364)
.+ |-..++++..|. .+.|..++. .|+ ++.|+...+. +.....++-+++++.|+|+|+|.|+.++++.|
T Consensus 74 ~s~GH~~Y~~~~l~g~--~~~l~~~r~------~~~-l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v 144 (641)
T PRK12571 74 WDVGHQCYPHKILTGR--RDRFRTLRQ------KGG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDV 144 (641)
T ss_pred EECchHHHHHHHHhCC--HHHHhhhhh------CCC-cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeE
Confidence 64 444456666776 455556543 344 7778765442 21122344466789999999999999999999
Q ss_pred EEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccc-------cccCCccH---------------------
Q 017890 263 VAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS-------EQFRSDGI--------------------- 314 (364)
Q Consensus 263 v~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~-------~~~~~~~i--------------------- 314 (364)
+|++|||++++|.+||++++|+.+++|+|+|++||++++++++. +.....++
T Consensus 145 ~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (641)
T PRK12571 145 VAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDG 224 (641)
T ss_pred EEEEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHH
Confidence 99999999999999999999999999999999999999999875 21112111
Q ss_pred --------------HHHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 315 --------------VVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 315 --------------a~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.+++++|||.++ .|||||++++.+|++++.+. .++|++|+++|..
T Consensus 225 ~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~---~~~P~~I~~~T~k 284 (641)
T PRK12571 225 ARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR---ADGPVLVHVVTEK 284 (641)
T ss_pred HHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC---CCCCEEEEEEecC
Confidence 478999999999 79999999999999887752 3789999999964
|
|
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=213.98 Aligned_cols=224 Identities=13% Similarity=0.136 Sum_probs=159.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC-CCcEEEcc--CCchhHHHhc
Q 017890 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQ--YREPGVLLWR 197 (364)
Q Consensus 121 ~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~~~--yR~~g~ll~r 197 (364)
|.+...++.++|.++-.. ++.+.++. ... ..|.+ .++.|-=-+.+++...++ |.|.++.. |-..++.+..
T Consensus 73 p~~~k~l~~~~L~~la~e-iR~~ii~~--~~~-~~GHl---gssLs~vEl~~aL~~vf~~p~DriI~s~GHqaya~~~lt 145 (641)
T PLN02234 73 PMHMKNLSIKELKVLSDE-LRSDVIFN--VSK-TGGHL---GSNLGVVELTVALHYIFNTPHDKILWDVGHQSYPHKILT 145 (641)
T ss_pred HHHHhhCCHHHHHHHHHH-HHHHHHHH--Hhh-cCCCc---cccchHHHHHHHHHHhcCCCCCeEEEecchhHHHHHHHH
Confidence 333456777777766443 22223332 221 24443 355655444455554554 78988775 4344444555
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccH
Q 017890 198 GYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF 276 (364)
Q Consensus 198 G~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~ 276 (364)
|.. +.|..++- .|+ +++|+...+ +++...+|++|++|++|+|+|+|.|+++.+..|||++|||+++||.+
T Consensus 146 gr~--~~l~t~r~------~gg-l~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~ 216 (641)
T PLN02234 146 GRR--GKMKTIRQ------TNG-LSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQA 216 (641)
T ss_pred hhh--hhhccccc------CCC-cCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHH
Confidence 541 22334322 344 788987655 57778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCcc------cccccccccCC---------------ccHHHHHhhcCeEEE-EEeCCCHH
Q 017890 277 HAALNFAAVMEAPVVFICRNNGWA------ISTNISEQFRS---------------DGIVVKGRAYGIRSI-RVDGNDAL 334 (364)
Q Consensus 277 ~EALn~Aa~~~LPvIfVV~NNg~a------is~~~~~~~~~---------------~~ia~~a~a~G~~~~-~VDGnD~~ 334 (364)
|||+|.|+..+-++|+|+++|+.+ .+.++...... +++.+++++|||.++ .|||||++
T Consensus 217 wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~ 296 (641)
T PLN02234 217 YEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNID 296 (641)
T ss_pred HHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHH
Confidence 999999997777999999999983 44444432211 356789999999999 99999999
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 335 AVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 335 av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
++.++++++.+. +.++|++|.++|.+
T Consensus 297 ~l~~al~~~k~~--~~~~P~vI~~~T~K 322 (641)
T PLN02234 297 DLVSILETLKST--KTIGPVLIHVVTEK 322 (641)
T ss_pred HHHHHHHHHHhc--CCCCCEEEEEEEec
Confidence 999999887642 23589999999964
|
|
| >PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-22 Score=213.75 Aligned_cols=222 Identities=16% Similarity=0.175 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----CcccccccCCchhHHHHHHHhhcC------CCcEEEccCCchh------H
Q 017890 130 EVAVKMYSHMVTLQVMDSVLYEAQRQ----GRFSFYLTTIGEEAINIGSAAALS------ADDFILPQYREPG------V 193 (364)
Q Consensus 130 e~l~~ly~~M~~~R~~D~~~~~~~rq----Gri~f~~~~~GqEa~~vg~a~aL~------~~D~v~~~yR~~g------~ 193 (364)
.++.+-.+..++-..++......... |.++-++++ -+...++....|+ .+|.|+.+ +|+ .
T Consensus 86 ~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~--a~i~~vl~~~~~r~~~~~~~~D~V~sk--GHasp~lYA~ 161 (896)
T PRK13012 86 LALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASA--ADLFEVGFNHFFRGRDDAGGGDLVYFQ--PHSAPGIYAR 161 (896)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHH--HHHHHHHHHhhcCCCCCCCCCCEEEEC--cchHHHHHHH
Confidence 34555455555556665443222111 444433333 2334445555566 56987775 443 2
Q ss_pred HHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-cc-ccccCCCcccchhHHHHHHHHhh-------hccCCCeEEE
Q 017890 194 LLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LN-YITISSPIATQLPQAVGVAYSLK-------MEKKDACAVA 264 (364)
Q Consensus 194 ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~-~~~~sg~LG~~lp~AvG~A~A~k-------~~~~~~~vv~ 264 (364)
+...|+..++-|..|+. .. .|.+++.||.... ++ +...+|+||.++++|+|.|++.| .+..+++|+|
T Consensus 162 ~~l~G~l~~e~L~~fR~-~~---~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~ 237 (896)
T PRK13012 162 AFLEGRLSEEQLDHFRQ-EI---GGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWG 237 (896)
T ss_pred HHHcCCCCHHHHHHhcC-CC---CCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEE
Confidence 44578656666777653 21 1566888876544 33 77789999999999999999998 3556789999
Q ss_pred EeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CccHHHHHhhcCeEEEEE--------------
Q 017890 265 YTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGIRSIRV-------------- 328 (364)
Q Consensus 265 ~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~-~~~ia~~a~a~G~~~~~V-------------- 328 (364)
++|||+++||..|||+.+|++++| ++||||++|..++++++..... ..++.++++++||.+++|
T Consensus 238 ~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~ 317 (896)
T PRK13012 238 FFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDT 317 (896)
T ss_pred EEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCC
Confidence 999999999999999999999999 9999999999999999887544 478999999999999999
Q ss_pred ------------e-------------------------------------------CCCHHHHHHHHHHHHHHhhcCCCc
Q 017890 329 ------------D-------------------------------------------GNDALAVYTAVQAAREMAISEKRP 353 (364)
Q Consensus 329 ------------D-------------------------------------------GnD~~av~~a~~~A~~~ar~~~~P 353 (364)
| |||+.+|++|+++|.+. .++|
T Consensus 318 ~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~---~~~P 394 (896)
T PRK13012 318 TGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH---KGQP 394 (896)
T ss_pred ccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCC
Confidence 8 99999999999988763 4689
Q ss_pred EEEEEEeec
Q 017890 354 VLVEVRLNF 362 (364)
Q Consensus 354 ~LIea~T~R 362 (364)
++|.++|..
T Consensus 395 tvIla~Tvk 403 (896)
T PRK13012 395 TVILAKTKK 403 (896)
T ss_pred EEEEEEeee
Confidence 999999975
|
|
| >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-22 Score=204.41 Aligned_cols=169 Identities=25% Similarity=0.370 Sum_probs=141.1
Q ss_pred CcEEEccCCchhHHH------hcCC--CHHHHHHHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHH
Q 017890 181 DDFILPQYREPGVLL------WRGY--TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAY 251 (364)
Q Consensus 181 ~D~v~~~yR~~g~ll------~rG~--~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~ 251 (364)
.|-++.+. +||-++ ..|+ ++++ |.+|+ +.|+.-|+||... ..++...+||||++++.|||+|+
T Consensus 59 RDRFVLSa-GHgSmllYsllhl~Gy~ls~ed-Lk~FR------Q~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAl 130 (663)
T COG0021 59 RDRFVLSA-GHGSMLLYSLLHLTGYDLSLED-LKNFR------QLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMAL 130 (663)
T ss_pred CccEEecC-CchhHHHHHHHHHccCCCCHHH-HHhhc------cCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHH
Confidence 47666552 555322 2465 5555 44554 2588899999854 46888899999999999999999
Q ss_pred Hhhhcc-----C-----CCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCccHHHHHhh
Q 017890 252 SLKMEK-----K-----DACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 252 A~k~~~-----~-----~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a 320 (364)
|.|... + |..++|++|||.++||..|||..+|++++| ++|++.++|..+|++.+...+ .+++.+|+++
T Consensus 131 Ae~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~RfeA 209 (663)
T COG0021 131 AEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFEA 209 (663)
T ss_pred HHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHHh
Confidence 988632 2 458999999999999999999999999999 899999999999999988877 6889999999
Q ss_pred cCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 321 YGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 321 ~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
|||+++ .+||||++++.+|+++|+. ..++|++|+|+|.
T Consensus 210 yGW~vi~~~DG~D~e~I~~Ai~~Ak~---~~dkPtlI~~kTi 248 (663)
T COG0021 210 YGWNVIRVIDGHDLEAIDKAIEEAKA---STDKPTLIIVKTI 248 (663)
T ss_pred cCCeEEEecCCCCHHHHHHHHHHHHh---cCCCCeEEEEEee
Confidence 999999 6799999999999999986 3779999999995
|
|
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=208.60 Aligned_cols=224 Identities=15% Similarity=0.198 Sum_probs=156.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC-CCcEEEcc--CCchhHHHhc
Q 017890 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQ--YREPGVLLWR 197 (364)
Q Consensus 121 ~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~~~--yR~~g~ll~r 197 (364)
|.+...++.+++.++-.. ++-+.++.. . ...|.++ ++.|-=-+.++.-..++ |.|.++.. |-..++++..
T Consensus 40 p~dlk~l~~~~l~~la~~-iR~~ii~~~--~-~~~GH~g---~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~ay~~~~l~ 112 (677)
T PLN02582 40 PIHMKNLSVKELKQLADE-LRSDVIFNV--S-KTGGHLG---SSLGVVELTVALHYVFNAPQDKILWDVGHQSYPHKILT 112 (677)
T ss_pred HHHHhhCCHHHHHHHHHH-HHHHHHHHH--H-hcCCCcC---ccccHHHHHHHHHHhhCCCCCeEEEECcchHHHHHHHH
Confidence 444567888887766443 222333332 2 1234443 45554434444444454 78988874 4445566666
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccH
Q 017890 198 GYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF 276 (364)
Q Consensus 198 G~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~ 276 (364)
|. .+.|..+.. .|+ +++|+...+ ++....+|++|++++.|+|+|+|.|+++.+++|||++|||++++|.+
T Consensus 113 gr--~~~l~~~r~------~g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~ 183 (677)
T PLN02582 113 GR--RDKMHTMRQ------TNG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQA 183 (677)
T ss_pred cc--HHHhccccc------CCC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhH
Confidence 76 233444432 354 888987655 56777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCc-cc--------ccccccc------------c--------------C--CccHH----
Q 017890 277 HAALNFAAVMEAPVVFICRNNGW-AI--------STNISEQ------------F--------------R--SDGIV---- 315 (364)
Q Consensus 277 ~EALn~Aa~~~LPvIfVV~NNg~-ai--------s~~~~~~------------~--------------~--~~~ia---- 315 (364)
|||+|+|+.+++|+|+||+||+. +| +..+... + + ...+.
T Consensus 184 ~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (677)
T PLN02582 184 YEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVD 263 (677)
T ss_pred HHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHH
Confidence 99999999999999999999996 22 1111000 0 0 01111
Q ss_pred ------------HHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 316 ------------VKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 316 ------------~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
..+++|||.++ .|||||++++.++++++++. ..++|++|+++|.+
T Consensus 264 ~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~K 321 (677)
T PLN02582 264 EYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEK 321 (677)
T ss_pred HHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecC
Confidence 23789999977 89999999999999988763 11689999999964
|
|
| >PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=208.76 Aligned_cols=256 Identities=16% Similarity=0.174 Sum_probs=205.4
Q ss_pred CCCeeEEecCCCCc-cc---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccccccCCchhHHHHHHHhhcC
Q 017890 105 RVPCFRVLDDNGEL-IK---GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQ-RQGRFSFYLTTIGEEAINIGSAAALS 179 (364)
Q Consensus 105 ~~~~~rv~~~~g~~-~~---~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~-rqGri~f~~~~~GqEa~~vg~a~aL~ 179 (364)
.++.-.|.|++=+. +. +....+.+.++.+.+++++.....||.++...+ .|.|.| ..|-|.+...+-..|+
T Consensus 464 g~EymhI~dpeqr~W~Q~rvE~~~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkRFs----lEG~Es~iplld~~~~ 539 (1228)
T PRK12270 464 GIEYMHIQDPEQRRWLQERVERPHEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKRFS----LEGGESLIPLLDAVLD 539 (1228)
T ss_pred eeeeeecCCHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhhhHHHHHHHHhhhcccceeee----ecchhhHHHHHHHHHH
Confidence 34556666665332 11 123568999999999999999999999987766 577744 5888887665544443
Q ss_pred ------CCcEEEc-cCCchhHHHh--cCCCHHHHHHHHhcCCCCC-CCCCC-CccccCCCc-----------ccccccCC
Q 017890 180 ------ADDFILP-QYREPGVLLW--RGYTLQQFANQVFANKADD-GKGRQ-MPIHYGSKK-----------LNYITISS 237 (364)
Q Consensus 180 ------~~D~v~~-~yR~~g~ll~--rG~~~~~~l~~~~g~~~~~-~~Gr~-mp~H~~~~~-----------~~~~~~sg 237 (364)
-+.++++ .||++...|+ .|.+..+++.+|-||.+.. ..|++ ...|.+... ..+..+.|
T Consensus 540 ~aa~~~l~evvigm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPS 619 (1228)
T PRK12270 540 QAAEHGLDEVVIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPS 619 (1228)
T ss_pred HHHhcCCceEEecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCch
Confidence 3568888 5999987777 5999999999999987643 24543 667776421 12345568
Q ss_pred CcccchhHHHHHHHHhhhc---c---CCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCC---EEEEEEcCCccccccccc
Q 017890 238 PIATQLPQAVGVAYSLKME---K---KDACAVAYTGDGGT-SEGDFHAALNFAAVMEAP---VVFICRNNGWAISTNISE 307 (364)
Q Consensus 238 ~LG~~lp~AvG~A~A~k~~---~---~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LP---vIfVV~NNg~ais~~~~~ 307 (364)
+|-.--|+.-|++.|.+.. + -....|++.||++| .+|.++|.||+|..+++| +|+||.||+++++|....
T Consensus 620 HLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~ 699 (1228)
T PRK12270 620 HLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPES 699 (1228)
T ss_pred hhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccc
Confidence 9999999999999997642 1 24578999999996 899999999999999998 899999999999998776
Q ss_pred ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 308 QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 308 ~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
..+.....+.++++++|++.|||+|++++.++.+.|+++++++++|++||++|||.+
T Consensus 700 ~Rss~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrr 756 (1228)
T PRK12270 700 SRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRR 756 (1228)
T ss_pred cccchhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeec
Confidence 666667778999999999999999999999999999999999999999999999975
|
|
| >PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=209.49 Aligned_cols=223 Identities=17% Similarity=0.180 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----CcccccccCCchhHHHHHHHhhcCC------CcEEEccCCchh------
Q 017890 129 KEVAVKMYSHMVTLQVMDSVLYEAQRQ----GRFSFYLTTIGEEAINIGSAAALSA------DDFILPQYREPG------ 192 (364)
Q Consensus 129 ~e~l~~ly~~M~~~R~~D~~~~~~~rq----Gri~f~~~~~GqEa~~vg~a~aL~~------~D~v~~~yR~~g------ 192 (364)
+.++.+.....++...++........- |.++-++++ -+...++....|+. +|.|+.+ +|+
T Consensus 77 ~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~--a~i~~vl~~~~~r~~~~~~~~D~V~sk--GHasp~lYA 152 (891)
T PRK09405 77 DLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASS--ATLYEVGFNHFFRAPNEPHGGDLVFFQ--GHASPGIYA 152 (891)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHH--HHHHHHHHHhhCCCCCCCCCCCEEEEC--chHHHHHHH
Confidence 445666667777777776554332211 444433332 33344555556664 6888865 443
Q ss_pred HHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-cc-ccccCCCcccchhHHHHHHHHhhh-------ccCCCeEE
Q 017890 193 VLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LN-YITISSPIATQLPQAVGVAYSLKM-------EKKDACAV 263 (364)
Q Consensus 193 ~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~-~~~~sg~LG~~lp~AvG~A~A~k~-------~~~~~~vv 263 (364)
.+...|+..++-|..|+. . ..|.++++||.... ++ +.+.+++||.+++.|+|.|++.|+ ++.+++|+
T Consensus 153 ~~~l~G~l~~e~L~~fR~-~---~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~ 228 (891)
T PRK09405 153 RAFLEGRLTEEQLDNFRQ-E---VDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVW 228 (891)
T ss_pred HHHHcCCCCHHHHHHhcC-C---CCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEE
Confidence 344578666666777653 2 23667888776543 33 567789999999999999999993 55678999
Q ss_pred EEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CccHHHHHhhcCeEEEEE-------------
Q 017890 264 AYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGIRSIRV------------- 328 (364)
Q Consensus 264 ~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~-~~~ia~~a~a~G~~~~~V------------- 328 (364)
|++|||+++||..|||+.+|++++| ++||||++|..++++++..... .+++.++++++||.+++|
T Consensus 229 ~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d 308 (891)
T PRK09405 229 AFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKD 308 (891)
T ss_pred EEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccC
Confidence 9999999999999999999999999 9999999999999999886433 578999999999999999
Q ss_pred -------------e-------------------------------------------CCCHHHHHHHHHHHHHHhhcCCC
Q 017890 329 -------------D-------------------------------------------GNDALAVYTAVQAAREMAISEKR 352 (364)
Q Consensus 329 -------------D-------------------------------------------GnD~~av~~a~~~A~~~ar~~~~ 352 (364)
| |||+.+|++|+++|.+. .++
T Consensus 309 ~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~---~~~ 385 (891)
T PRK09405 309 TSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH---KGQ 385 (891)
T ss_pred CccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC---CCC
Confidence 4 99999999999988863 478
Q ss_pred cEEEEEEeec
Q 017890 353 PVLVEVRLNF 362 (364)
Q Consensus 353 P~LIea~T~R 362 (364)
|++|.++|..
T Consensus 386 PtvIia~Tvk 395 (891)
T PRK09405 386 PTVILAKTIK 395 (891)
T ss_pred CEEEEEecee
Confidence 9999999975
|
|
| >KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-21 Score=195.95 Aligned_cols=212 Identities=20% Similarity=0.244 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC---------CCcEEEccCCchh------HHHhcCCCHH
Q 017890 138 HMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQYREPG------VLLWRGYTLQ 202 (364)
Q Consensus 138 ~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~---------~~D~v~~~yR~~g------~ll~rG~~~~ 202 (364)
.|-.+|...-.+...-..|..++.++. -|...+-.-..++ ..|-++.+ .+|+ +....|+..+
T Consensus 13 ~~n~lri~si~~~~~a~sghp~s~~s~--A~~~~vlf~~~mr~~~~~p~~~n~Drfvls-~GHa~~llYa~~~l~G~~~~ 89 (632)
T KOG0523|consen 13 AVNNLRILSIDATSAAKSGHPGSPLSL--APIMHVLFFEVMRYNPADPYWFNRDRFVLS-NGHACPLLYAHWHLAGYDRE 89 (632)
T ss_pred HhhhhhhhhHHHHHhhhcCCCCCcccc--chhhhhhhhhheecccCCcCCCCCceEEEe-ccccchHHHHHHHHhccCcH
Confidence 455677777666666667766554443 3444444444443 24766665 3444 3444787777
Q ss_pred HHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccC-CCeEEEEeCCCccccccHHHHHH
Q 017890 203 QFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK-DACAVAYTGDGGTSEGDFHAALN 281 (364)
Q Consensus 203 ~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~-~~~vv~~~GDGa~~eG~~~EALn 281 (364)
+-|.+++- .|+..+.|+..+..++...+|++|++|+.|+|+|++.|+.+. +.+|+|++|||+++||..|||++
T Consensus 90 edl~~~Rq------~~s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s 163 (632)
T KOG0523|consen 90 EDLKNFRQ------IGSDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMS 163 (632)
T ss_pred HHHHHHHh------hCCCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHh
Confidence 77878764 578889999876667777889999999999999999999887 89999999999999999999999
Q ss_pred HHHHcCC-CEEEEEEcCCcccccccccccCCccHHH-HHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 282 FAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVV-KGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 282 ~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~~~~ia~-~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
+|+.++| ++|+|.+||+..+++++...+. .++.+ +.++|||+++.|||+|++++.+++.+|+. ..++|++|-+.
T Consensus 164 ~Ag~l~ldnLVai~D~n~is~~g~t~~~~~-~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~---~k~kpt~i~~~ 239 (632)
T KOG0523|consen 164 LAGHLKLDNLVAIYDNNKISIDGATSLGFD-EDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKS---VKGKPTAIKAT 239 (632)
T ss_pred hhhhcccCCEEEEEccccccCCCCCccccc-ccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhh---ccCCceeeeee
Confidence 9999999 8999999999999999887764 56666 99999999999999999999999999874 35799999999
Q ss_pred eec
Q 017890 360 LNF 362 (364)
Q Consensus 360 T~R 362 (364)
|+.
T Consensus 240 t~~ 242 (632)
T KOG0523|consen 240 TFI 242 (632)
T ss_pred eee
Confidence 863
|
|
| >PRK05261 putative phosphoketolase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-19 Score=191.45 Aligned_cols=198 Identities=20% Similarity=0.232 Sum_probs=153.9
Q ss_pred ccccccCCchhHHHHHHHhhcCCC--cEEEccCCchhH------HHhcC--------CCHHHH-HHHHhcCCCCCCCCCC
Q 017890 158 FSFYLTTIGEEAINIGSAAALSAD--DFILPQYREPGV------LLWRG--------YTLQQF-ANQVFANKADDGKGRQ 220 (364)
Q Consensus 158 i~f~~~~~GqEa~~vg~a~aL~~~--D~v~~~yR~~g~------ll~rG--------~~~~~~-l~~~~g~~~~~~~Gr~ 220 (364)
++.+-++.|+-.+.+.+....+.. |+++..--+||. +..-| ++.++. |..+|.+-. .-.+
T Consensus 49 ~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs---~pgg 125 (785)
T PRK05261 49 LGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFS---FPGG 125 (785)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhcc---CCCC
Confidence 478889999999988888888765 655554445542 22246 333332 443333221 1126
Q ss_pred CccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccH---HHHHHHHHHcCC-CEEEEEEc
Q 017890 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF---HAALNFAAVMEA-PVVFICRN 296 (364)
Q Consensus 221 mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~---~EALn~Aa~~~L-PvIfVV~N 296 (364)
+++|+....+|+...+|+||+++++|+|+|+. +++.+|+|++|||++++|.+ |++.+++..+++ .|+.|+++
T Consensus 126 ~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~ 201 (785)
T PRK05261 126 IPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHL 201 (785)
T ss_pred cCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEe
Confidence 89999876789999999999999999999964 57889999999999999984 888888888888 78999999
Q ss_pred CCcccccccccc-cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHH-----------HhhcC---CCcE--EEEEE
Q 017890 297 NGWAISTNISEQ-FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAARE-----------MAISE---KRPV--LVEVR 359 (364)
Q Consensus 297 Ng~ais~~~~~~-~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~-----------~ar~~---~~P~--LIea~ 359 (364)
|+|+|++++... ...+++.+++++|||+++.|||+|++++++++++|++ .||++ .+|. +|.++
T Consensus 202 Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~r 281 (785)
T PRK05261 202 NGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLR 281 (785)
T ss_pred cCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEE
Confidence 999999999865 4457899999999999999999999999999776654 33434 5899 99999
Q ss_pred eec
Q 017890 360 LNF 362 (364)
Q Consensus 360 T~R 362 (364)
|..
T Consensus 282 T~k 284 (785)
T PRK05261 282 TPK 284 (785)
T ss_pred CCc
Confidence 864
|
|
| >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-18 Score=151.24 Aligned_cols=116 Identities=26% Similarity=0.342 Sum_probs=95.8
Q ss_pred cccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccc------
Q 017890 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS------ 306 (364)
Q Consensus 233 ~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~------ 306 (364)
....++||+++|.|+|++++. ++++|||++|||++.+ ..++|++|..+++|+++||.||++...+...
T Consensus 42 ~~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~ 115 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYG 115 (168)
T ss_pred CCCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcC
Confidence 445689999999999999886 4789999999999998 4588999999999999999888865544322
Q ss_pred -----cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 307 -----EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 307 -----~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
......++.+.+++||+++++|++ ++++.++++++++ .++|+|||++|
T Consensus 116 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~~l~~a~~~a~~----~~~p~~i~v~~ 168 (168)
T cd00568 116 GRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDLEAALAEALA----AGGPALIEVKT 168 (168)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 223456899999999999999984 7888888887764 68999999986
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. |
| >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-18 Score=151.69 Aligned_cols=114 Identities=21% Similarity=0.278 Sum_probs=93.3
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccccc-----
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISEQ----- 308 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~~~----- 308 (364)
..|+||+++|.|+|+++|. ++++|||++|||++++. .++|.+|+++++|+++||.|| +|++.....+.
T Consensus 46 ~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~ 119 (172)
T cd02004 46 TFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLG 119 (172)
T ss_pred CCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCC
Confidence 3588999999999998874 67899999999999974 466999999999987776555 68876543221
Q ss_pred ------cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 309 ------FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 309 ------~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
....++++++++||+++.+|+ +++++.++++++++ .++|+|||+++
T Consensus 120 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i 171 (172)
T cd02004 120 LPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALA----SGKPALINVII 171 (172)
T ss_pred CceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH----cCCCEEEEEEc
Confidence 235689999999999999998 58899888888775 47999999986
|
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. |
| >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-18 Score=155.29 Aligned_cols=118 Identities=22% Similarity=0.279 Sum_probs=95.5
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEE-cCCccccccccc-------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR-NNGWAISTNISE------- 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~-NNg~ais~~~~~------- 307 (364)
.++||+++|.|+|+++|. ++++|||++|||++++. ..| |.+|+++++|+++||. |++|++......
T Consensus 52 ~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~ 125 (196)
T cd02013 52 FGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGMS-MME-IMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRF 125 (196)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCc
Confidence 488999999999998874 68899999999999984 555 9999999999987775 556876432111
Q ss_pred ---ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 ---QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ---~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++++.|++||+++++|+ +++++.+++++|++.++. ++|+|||+++.+
T Consensus 126 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~~p~liev~v~~ 180 (196)
T cd02013 126 VGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAE-GKTTVIEIVCDQ 180 (196)
T ss_pred ccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCC-CCeEEEEEEeCc
Confidence 1234689999999999999998 689999999999875443 789999999864
|
Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. |
| >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=153.86 Aligned_cols=120 Identities=23% Similarity=0.278 Sum_probs=96.6
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE------ 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~------ 307 (364)
..|+||+++|.|+|+++|. ++++|||++|||++++. ..| |.+|.++++|+++||.||+ |++.....+
T Consensus 55 ~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~ 128 (202)
T cd02006 55 QAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQFM-IEE-LAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDY 128 (202)
T ss_pred CccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhhcc-HHH-HHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcc
Confidence 3589999999999998874 68899999999999985 455 9999999999988877775 765321110
Q ss_pred -------c-------cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 -------Q-------FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 -------~-------~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
. ....++++.|++||+++.+|+ +++++.+++++|++.+++.++|+|||+++-+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~ 195 (202)
T cd02006 129 QVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILER 195 (202)
T ss_pred ccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEecc
Confidence 0 013689999999999999998 7899999999998655446799999999865
|
E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. |
| >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-17 Score=150.16 Aligned_cols=112 Identities=28% Similarity=0.295 Sum_probs=93.2
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc--------
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE-------- 307 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~-------- 307 (364)
|+||+++|.|+|+++|. ++++|||++|||+++++. .+|.+|.++++|+++||.||+ |++......
T Consensus 49 g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~ 122 (178)
T cd02002 49 GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPG 122 (178)
T ss_pred ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcc
Confidence 89999999999999885 578999999999999873 469999999999998888885 887542111
Q ss_pred ---------ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 308 ---------QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 308 ---------~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.....++++.+++||+++++|++ ++++.+++++|++ .++|+|||+++
T Consensus 123 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~----~~~p~vi~v~v 178 (178)
T cd02002 123 ENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREALA----EGGPALIEVVV 178 (178)
T ss_pred cccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 11246899999999999999985 8899999988875 57899999874
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. |
| >PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.8e-17 Score=156.98 Aligned_cols=167 Identities=17% Similarity=0.160 Sum_probs=134.5
Q ss_pred cCCchhHHHhcCCCHH-HHHHHHhcCCC------CCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCC
Q 017890 187 QYREPGVLLWRGYTLQ-QFANQVFANKA------DDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKD 259 (364)
Q Consensus 187 ~yR~~g~ll~rG~~~~-~~l~~~~g~~~------~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~ 259 (364)
-||+|+.....|.++. ..+.+.+++.. |+..+.+...|+.. .++....+++|.++++|.|+++|.|..+++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~--~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSP--LTVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCccc--ccccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5788999999998877 78888887766 66666666656554 366677899999999999999999887655
Q ss_pred -CeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccc-----------------cccCCccHHHHHhhc
Q 017890 260 -ACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS-----------------EQFRSDGIVVKGRAY 321 (364)
Q Consensus 260 -~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~-----------------~~~~~~~ia~~a~a~ 321 (364)
..|++++|||++.++.+ |+|+.|+.+++|++|||.||.+.+.|-.+ .....-|+...+.++
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~ 170 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAH 170 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHc
Confidence 45666999999988886 99999999999999999999986654221 111235788899999
Q ss_pred CeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 322 GIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 322 G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
|++.+ +++-.|+.++.+++++|.+ .++|.+|++.+
T Consensus 171 g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~s 206 (300)
T PRK11864 171 KVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLA 206 (300)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 99666 7788899999999999987 57999999874
|
|
| >PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-17 Score=157.70 Aligned_cols=220 Identities=18% Similarity=0.226 Sum_probs=142.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC-CCcEEEc--cCCchhHHHhc
Q 017890 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILP--QYREPGVLLWR 197 (364)
Q Consensus 121 ~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~~--~yR~~g~ll~r 197 (364)
|.+...++.++|.++-+. +|.+ ++....+.| +...++.|---..++....++ |.|.|+. .|....+-+..
T Consensus 7 p~dlk~ls~~eL~~La~e---iR~~--ii~~vs~~G--GHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLT 79 (270)
T PF13292_consen 7 PEDLKKLSIEELEQLAQE---IREF--IIETVSKTG--GHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILT 79 (270)
T ss_dssp HHHHTTS-GGGHHHHHHH---HHHH--HHHHCTCCC--STHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCT
T ss_pred HHHHHcCCHHHHHHHHHH---HHHH--HHHHHhhcC--CCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhcc
Confidence 334557888888877654 4432 222222333 466788888888888888887 7897776 57777777766
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCccccCCCcc-cccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccH
Q 017890 198 GYTLQQFANQVFANKADDGKGRQMPIHYGSKKL-NYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDF 276 (364)
Q Consensus 198 G~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~-~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~ 276 (364)
|.. +.|..++ +-.++++.+...+. .-.+..|+-++.++.|+|+|.|.++++++..||+++|||++.-|..
T Consensus 80 GR~--~~f~TlR-------q~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma 150 (270)
T PF13292_consen 80 GRR--DRFHTLR-------QYGGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMA 150 (270)
T ss_dssp TTC--CCGGGTT-------STTS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHH
T ss_pred CcH--HHhchhh-------hcCCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHH
Confidence 642 2233332 12233443333332 2234679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCcccccccccc------------c---C--------------------CccH----HHH
Q 017890 277 HAALNFAAVMEAPVVFICRNNGWAISTNISEQ------------F---R--------------------SDGI----VVK 317 (364)
Q Consensus 277 ~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~------------~---~--------------------~~~i----a~~ 317 (364)
+||||-|+..+-++|+|+++|+..|+..+... + . .+.+ ...
T Consensus 151 ~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~l 230 (270)
T PF13292_consen 151 FEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNL 230 (270)
T ss_dssp HHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC-------------------------------------------CC
T ss_pred HHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHH
Confidence 99999999999999999999999887543110 0 0 0001 123
Q ss_pred HhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 318 GRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 318 a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
++.+|+.++ .|||||++++.++++.+++ -++|+||+++|
T Consensus 231 Fe~LG~~Y~GPiDGHdl~~Li~~l~~~K~----~~gPvllHV~T 270 (270)
T PF13292_consen 231 FEELGFDYIGPIDGHDLEELIEVLENAKD----IDGPVLLHVIT 270 (270)
T ss_dssp CHHCT-EEEEEEETT-HHHHHHHHHHHCC----SSSEEEEEEE-
T ss_pred HHHcCCeEEeccCCCCHHHHHHHHHHHhc----CCCCEEEEEeC
Confidence 566799998 5899999999999988775 58999999987
|
|
| >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-17 Score=146.25 Aligned_cols=116 Identities=23% Similarity=0.327 Sum_probs=94.1
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS------- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~------- 306 (364)
..|+||+++|.|+|+++|. ++++||+++|||+++++ ..| |.+|..+++|+++||.||+ |++.....
T Consensus 49 ~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~ 122 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPE 122 (178)
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCc
Confidence 3489999999999998874 67899999999999987 666 8889999999988888885 77642111
Q ss_pred --cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++.+.+++||+++++|+ +++++.++++++++ .++|+|||+++.+
T Consensus 123 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~~----~~~p~liev~~~~ 174 (178)
T cd02014 123 FGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALA----ADGPVVIDVVTDP 174 (178)
T ss_pred eeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 01134689999999999999998 68888888887765 5799999999865
|
POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. |
| >KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.4e-17 Score=164.05 Aligned_cols=237 Identities=19% Similarity=0.163 Sum_probs=183.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHH------hhcCCCcEEEc-cCCchhHHHh-
Q 017890 125 QQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSA------AALSADDFILP-QYREPGVLLW- 196 (364)
Q Consensus 125 ~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a------~aL~~~D~v~~-~yR~~g~ll~- 196 (364)
.++.+|++.++-+.|+.+..||+++...+..-+ -| ...|.|.+..=.- +--+..|+|++ .||++..++.
T Consensus 152 e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvK--RY-GgEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGRlnLlt~ 228 (913)
T KOG0451|consen 152 EQLGKEERCEIAELMLKSQAFDNFLATKFPTVK--RY-GGEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNLLTA 228 (913)
T ss_pred HHhhHHHHHHHHHHHHhhhhHHHHHHhccchhh--hh-ccccHHHHHHHHHHHHHHHHhcCcceEEEeccccCcchHHHH
Confidence 368899999999999999999999988765422 11 2456665532111 11246799998 5999988776
Q ss_pred -cCCCHHHHHHHHhcCCCCCC---CCCCCccccCC--------Ccc--cccccCCCcccchhHHHHHHHHhhhc------
Q 017890 197 -RGYTLQQFANQVFANKADDG---KGRQMPIHYGS--------KKL--NYITISSPIATQLPQAVGVAYSLKME------ 256 (364)
Q Consensus 197 -rG~~~~~~l~~~~g~~~~~~---~Gr~mp~H~~~--------~~~--~~~~~sg~LG~~lp~AvG~A~A~k~~------ 256 (364)
..|++..++..+.|...-+. .-+..-.|..+ +++ ...++.++|....|+|+|-+.+.+..
T Consensus 229 Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdy 308 (913)
T KOG0451|consen 229 LLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDY 308 (913)
T ss_pred HhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhccCchhhcchhHHHHhhcCCCC
Confidence 57999999999988765432 11222234322 111 24677899999999999999887542
Q ss_pred --------cCCCeEEEEeCCCcc-ccccHHHHHHHHHH--cCC-CEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 257 --------KKDACAVAYTGDGGT-SEGDFHAALNFAAV--MEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 257 --------~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~--~~L-PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
++....|.+.||+++ .+|.++|.++++-. +++ ..+.+|.||+.+..+|.+...+...-.+.|++++++
T Consensus 309 spd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~p 388 (913)
T KOG0451|consen 309 SPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAP 388 (913)
T ss_pred CCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCcccccccchhhhHHHHHhCCC
Confidence 112256778999998 79999999999864 455 579999999999999988877777778899999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
++.|+|.|+++|.+|.+-|++|.|+.++.++|+..+||.|
T Consensus 389 viHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrw 428 (913)
T KOG0451|consen 389 VIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRW 428 (913)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHh
Confidence 9999999999999999999999999999999999999988
|
|
| >COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=169.95 Aligned_cols=238 Identities=15% Similarity=0.107 Sum_probs=194.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccccccCCchhHHHHHHHhhc------CCCcEEEc-cCCchhHH
Q 017890 123 DFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQ-RQGRFSFYLTTIGEEAINIGSAAAL------SADDFILP-QYREPGVL 194 (364)
Q Consensus 123 ~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~-rqGri~f~~~~~GqEa~~vg~a~aL------~~~D~v~~-~yR~~g~l 194 (364)
..+.+++|+.+.+++.+..+..||+.+-..+ .|.|.| ..|-|+...++-..+ ..+++|++ .||++...
T Consensus 168 ~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRFs----lEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNv 243 (906)
T COG0567 168 GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRFS----LEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNV 243 (906)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCcccc----ccchhhHHHHHHHHHHHHHhcCcceEEecccccchHHH
Confidence 4578999999999999999999999987766 366643 589999877665544 35699999 59999877
Q ss_pred Hh--cCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc----------ccccccCCCcccchhHHHHHHHHhhhccC----
Q 017890 195 LW--RGYTLQQFANQVFANKADDGKGRQMPIHYGSKK----------LNYITISSPIATQLPQAVGVAYSLKMEKK---- 258 (364)
Q Consensus 195 l~--rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~----------~~~~~~sg~LG~~lp~AvG~A~A~k~~~~---- 258 (364)
|. .|.+++.++++|.|+..-...-+....|.|... +.+.++.|+|-...|+..|.+.|.+-...
T Consensus 244 L~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~ 323 (906)
T COG0567 244 LVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTER 323 (906)
T ss_pred HHHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEecCCcchhhhhchhhhcchHhhhhhhccCcc
Confidence 76 699999999999986543222334566765311 12456779999999999999999875422
Q ss_pred -CCeEEEEeCCCcc-ccccHHHHHHHHHHcCC---CEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCH
Q 017890 259 -DACAVAYTGDGGT-SEGDFHAALNFAAVMEA---PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDA 333 (364)
Q Consensus 259 -~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~L---PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~ 333 (364)
....|.++||.++ .+|.+.|.||+...-+. +.|.||.||+.+.+|......+.+.-.+.|+.+++|+++|+|.|+
T Consensus 324 ~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~~aPifHVN~DDP 403 (906)
T COG0567 324 DKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADDP 403 (906)
T ss_pred ceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhhccCCceeecccCCc
Confidence 2456799999998 79999999999987654 889999999999998855555556666889999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 334 LAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 334 ~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
+|+..+.+.|.+++.+.+++++|+..+||+|
T Consensus 404 EAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~ 434 (906)
T COG0567 404 EAVLFAPALALEYRNGFKKDVVIDLVCYRRH 434 (906)
T ss_pred hhhhhhHHHHHHHHhhcCCCeeeecccCCCC
Confidence 9999999999999999999999999999986
|
|
| >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=144.40 Aligned_cols=115 Identities=25% Similarity=0.369 Sum_probs=91.5
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc------c--
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI------S-- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~------~-- 306 (364)
.++||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|+++++|+++||.||+ |++.... .
T Consensus 49 ~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~~-~~e-L~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~ 122 (186)
T cd02015 49 LGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN-IQE-LATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRY 122 (186)
T ss_pred ccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhcc-HHH-HHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCce
Confidence 489999999999998874 67899999999999974 555 9999999999987777776 5542210 0
Q ss_pred ---cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 ---EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 ---~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++++.|++||+++++|++ .+++.+++++|++ .++|+|||+++.+
T Consensus 123 ~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~----~~~p~liev~~~~ 175 (186)
T cd02015 123 SHTTLDSNPDFVKLAEAYGIKGLRVEK--PEELEAALKEALA----SDGPVLLDVLVDP 175 (186)
T ss_pred eeccCCCCCCHHHHHHHCCCceEEeCC--HHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 111346899999999999999984 7788888877765 6899999999864
|
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. |
| >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=143.37 Aligned_cols=116 Identities=20% Similarity=0.354 Sum_probs=93.5
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc--------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-------- 305 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~-------- 305 (364)
..++||+++|.|+|+++|. ++++||+++|||++.+. .. .|.+|.++++|+++||.|| +|++....
T Consensus 46 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~-~~-eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~ 119 (177)
T cd02010 46 GLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMN-SQ-ELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRD 119 (177)
T ss_pred CChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhH-HH-HHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 4589999999999999884 67899999999999875 34 4999999999997776655 57764211
Q ss_pred -ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 -SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 -~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.......++++.|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 120 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 171 (177)
T cd02010 120 SGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHVIDCPVDY 171 (177)
T ss_pred ccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 011124589999999999999997 79999999998876 5799999999864
|
ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. |
| >COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.2e-16 Score=159.27 Aligned_cols=221 Identities=19% Similarity=0.213 Sum_probs=160.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccccccCCchhHHHHHHHhhcC-CCcEEEc--cCCchhHHH
Q 017890 120 KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQ-RQGRFSFYLTTIGEEAINIGSAAALS-ADDFILP--QYREPGVLL 195 (364)
Q Consensus 120 ~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~-rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~~--~yR~~g~ll 195 (364)
.|.+...+|.++|.++-.. +|. .+.+.. +.| +...++.|---+.|+....++ |.|.++. .|....+-+
T Consensus 10 ~P~dLk~ls~~eL~~La~E---iR~---~li~~vS~~G--GHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKi 81 (627)
T COG1154 10 SPADLKKLSIEELPQLADE---IRE---FLLEVVSATG--GHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKI 81 (627)
T ss_pred CHHHHhhCCHHHHHHHHHH---HHH---HHHHHhccCC--CccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHH
Confidence 3445668888888887654 342 233333 233 466688998888888888887 7887766 577777777
Q ss_pred hcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcc-cccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccc
Q 017890 196 WRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKL-NYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEG 274 (364)
Q Consensus 196 ~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~-~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG 274 (364)
..|.. +.|..++- -.+++..+...+. .-...+|+-++.|+.|+|+|.|..+++.++.||+++||||++-|
T Consensus 82 LTGR~--e~f~tlRq-------~~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~G 152 (627)
T COG1154 82 LTGRR--EQFDTLRQ-------KDGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGG 152 (627)
T ss_pred hcCch--hhcchhhh-------cCCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccch
Confidence 77752 44444432 1223333333332 22346799999999999999999999999999999999999999
Q ss_pred cHHHHHHHHH-HcCCCEEEEEEcCCccccccccccc-------C----------C--------c-----------cH---
Q 017890 275 DFHAALNFAA-VMEAPVVFICRNNGWAISTNISEQF-------R----------S--------D-----------GI--- 314 (364)
Q Consensus 275 ~~~EALn~Aa-~~~LPvIfVV~NNg~ais~~~~~~~-------~----------~--------~-----------~i--- 314 (364)
..+||||-|+ ..+-|+|+|+++|..+|+.++..-. . . + .+
T Consensus 153 mA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l 232 (627)
T COG1154 153 MAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGL 232 (627)
T ss_pred HHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcc
Confidence 9999999998 4456999999999999987642100 0 0 0 00
Q ss_pred ---HHHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 315 ---VVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 315 ---a~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
...++.+|+..+ .|||||++++..+++.+++ -++|+||+++|-
T Consensus 233 ~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd----~~gPvllHv~T~ 279 (627)
T COG1154 233 LVPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKD----LKGPVLLHVVTK 279 (627)
T ss_pred cCchhhHHHhCCeeECCcCCCCHHHHHHHHHHHhc----CCCCEEEEEEec
Confidence 025678899998 5899999999999998877 589999999984
|
|
| >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-16 Score=145.97 Aligned_cols=116 Identities=15% Similarity=0.202 Sum_probs=92.0
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-----c-
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-----E- 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~-----~- 307 (364)
..|+||+++|.|+|+++|. ++++|||++|||++.++ .. +|.+|.++++|+++||.|| +|++..... .
T Consensus 46 ~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~m~-~~-eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 119 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYLML-HS-EIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGS 119 (205)
T ss_pred CcchhhhHHHHHHHHHHhC----CCCeEEEEEccchhhcc-HH-HHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCcc
Confidence 3588999999999998874 68899999999999985 44 4999999999986655555 576532110 0
Q ss_pred -----------------ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 -----------------QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 -----------------~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++.+.|++||+++++|+ +++++.+|+++|++ .++|+|||+++-+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~v~~ 185 (205)
T cd02003 120 FGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKA----SDRTTVIVIKTDP 185 (205)
T ss_pred ccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeec
Confidence 0124689999999999999996 79999999998875 5899999999854
|
viciae IolD. IolD plays an important role in myo-inositol catabolism. |
| >cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-16 Score=139.50 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=91.7
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHc-CCCEEEEEEcC-CcccccccccccCCcc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM-EAPVVFICRNN-GWAISTNISEQFRSDG 313 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~-~LPvIfVV~NN-g~ais~~~~~~~~~~~ 313 (364)
.|+||+++|.|+|+++|. + ++|||+.|||++++. ..| |.++.++ ++|+++||.|| +|++...........+
T Consensus 41 ~gsmG~~lp~AiGa~~a~----~-~~Vv~i~GDG~f~m~-~~e-l~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d 113 (157)
T cd02001 41 LGSMGLAGSIGLGLALGL----S-RKVIVVDGDGSLLMN-PGV-LLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVN 113 (157)
T ss_pred ecchhhHHHHHHHHHhcC----C-CcEEEEECchHHHhc-ccH-HHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCC
Confidence 799999999999999985 2 789999999999764 444 8899988 59998777555 5776432221222578
Q ss_pred HHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 314 IVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 314 ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
+++.|++||+++++|+ +++++.++++++++ .++|++||+.+.+
T Consensus 114 ~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~vi~v~i~~ 156 (157)
T cd02001 114 LEAWAAACGYLVLSAP--LLGGLGSEFAGLLA----TTGPTLLHAPIAP 156 (157)
T ss_pred HHHHHHHCCCceEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 9999999999999996 79999999999886 5789999998753
|
Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors. |
| >cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-16 Score=140.61 Aligned_cols=113 Identities=16% Similarity=0.250 Sum_probs=90.5
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEE-EEcCCccccccccccc-CCc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFI-CRNNGWAISTNISEQF-RSD 312 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfV-V~NNg~ais~~~~~~~-~~~ 312 (364)
.|+||+++|.|+|+++|.+ ++|||++|||++.++ . .+|.+|..+++ |+++| ++||+|++........ ...
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~-~-~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~ 113 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMN-L-GALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKT 113 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhC-H-HHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCC
Confidence 6999999999999999853 789999999999764 3 45888999996 67555 5666788764322222 246
Q ss_pred cHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 313 GIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 313 ~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
++++.|++||+++.+|+| +++++.+++++++ ++|+|||+.|.+
T Consensus 114 d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~ 156 (179)
T cd03372 114 DLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKP 156 (179)
T ss_pred CHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcC
Confidence 899999999999999997 7889888887775 589999999854
|
M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors. |
| >cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.8e-16 Score=140.33 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=91.2
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCC-cccccccccccCCcc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNG-WAISTNISEQFRSDG 313 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg-~ais~~~~~~~~~~~ 313 (364)
+|+||+++|.|+|+++|. +++.|||++|||++.+. .++|.+++++++ |+++||.||+ |++...........+
T Consensus 47 ~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d 120 (188)
T cd03371 47 VGSMGHASQIALGIALAR----PDRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVS 120 (188)
T ss_pred cCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCC
Confidence 499999999999999885 57899999999999863 355999999997 6776666664 665432111223468
Q ss_pred HHHHHhhcCeEE-EEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 314 IVVKGRAYGIRS-IRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 314 ia~~a~a~G~~~-~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
+++.|++||++. .+|+ +++++.+++++|++ .++|+|||+.+-+
T Consensus 121 ~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~~~~ 164 (188)
T cd03371 121 LPAIAKACGYRAVYEVP--SLEELVAALAKALA----ADGPAFIEVKVRP 164 (188)
T ss_pred HHHHHHHcCCceEEecC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 999999999997 5787 79999999998875 5789999999854
|
PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors. |
| >cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.9e-16 Score=139.41 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=92.7
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEE-EEEEcCCccccccccc------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVV-FICRNNGWAISTNISE------ 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvI-fVV~NNg~ais~~~~~------ 307 (364)
..++||+++|.|+|+++|. +++.||+++|||++.+ .++| |.+|+++++|++ +|++||+|++......
T Consensus 48 ~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~-~~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~ 121 (183)
T cd02005 48 LWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQM-TVQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYN 121 (183)
T ss_pred chhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhc-cHHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcc
Confidence 4589999999999999885 5689999999999977 5777 889999999875 5555666876432111
Q ss_pred ccCCccHHHHHhhcC----eEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 QFRSDGIVVKGRAYG----IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ~~~~~~ia~~a~a~G----~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++.+.|++|| +++++|+ +++++.++++++++ ..++|+|||+++.|
T Consensus 122 ~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 122 DIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred cCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 122468999999999 7898886 79999999988876 24789999999876
|
PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. |
| >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-15 Score=136.29 Aligned_cols=117 Identities=19% Similarity=0.154 Sum_probs=92.4
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccccc------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISE------ 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~~------ 307 (364)
..++||+++|.|+|+++|. ++++||+++|||++.+.. .++|.+|.++++|+++||.|| +|++......
T Consensus 49 ~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~ 123 (178)
T cd02008 49 TCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKT 123 (178)
T ss_pred ccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCccc
Confidence 4689999999999999885 578899999999997632 466999999999997666666 4654332111
Q ss_pred ---ccCCccHHHHHhhcCeEEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 308 ---QFRSDGIVVKGRAYGIRSIRV-DGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 308 ---~~~~~~ia~~a~a~G~~~~~V-DGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.....++++.+++||+++++| +++|++++.+++++|++ .++|+||+++.
T Consensus 124 ~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~----~~gp~lI~v~~ 176 (178)
T cd02008 124 LTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVSVIIAKR 176 (178)
T ss_pred ccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 012368999999999999999 77888888888888875 57899999874
|
IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. |
| >PRK06163 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=141.51 Aligned_cols=115 Identities=22% Similarity=0.282 Sum_probs=92.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHc-CCCEEEEEEcC-Cccccccccc-ccCCc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM-EAPVVFICRNN-GWAISTNISE-QFRSD 312 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~-~LPvIfVV~NN-g~ais~~~~~-~~~~~ 312 (364)
.|+||+++|.|+|+++|. ++++|||++|||++++. .. +|.+|+++ ++|+++||.|| +|++...... .....
T Consensus 56 ~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~-~~-eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~ 129 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQ-LG-ALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTV 129 (202)
T ss_pred ecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHH-HH-HHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCC
Confidence 689999999999999884 67899999999999874 34 49999877 68998888777 5776322111 12346
Q ss_pred cHHHHHhhcCeE-EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 313 GIVVKGRAYGIR-SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 313 ~ia~~a~a~G~~-~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
|+++.|++||++ +++|+ +.+++..+++++++ .++|+|||+++.+
T Consensus 130 Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 174 (202)
T PRK06163 130 DVVAIARGAGLENSHWAA--DEAHFEALVDQALS----GPGPSFIAVRIDD 174 (202)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 899999999998 67887 78999999998875 5799999999864
|
|
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-15 Score=159.97 Aligned_cols=226 Identities=12% Similarity=0.072 Sum_probs=164.0
Q ss_pred CcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcccccccCCchhHHHHHHHhhcC-CCcEEEc--cCCchh
Q 017890 117 ELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEA-QRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILP--QYREPG 192 (364)
Q Consensus 117 ~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~-~rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~~--~yR~~g 192 (364)
++-.|.+..+++.++|.+|-.. +|.+ ++... .+.| +...++.|-=-+.|+....++ |.|.|+. .|....
T Consensus 81 ~i~~P~dlk~L~~~eL~~La~E---iR~~--li~~v~s~~G--GHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~ 153 (701)
T PLN02225 81 SIETPLQLKNLSVKELKLLADE---IRTE--LHSVLWKKTQ--KSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYA 153 (701)
T ss_pred hcCCHHHHhhCCHHHHHHHHHH---HHHH--HHHHhhcccC--CCcCCCccHHHHHHHHHHHhCCCCCceeeccccccch
Confidence 3444556678999999888664 4532 22333 2344 456689998888899999987 7897776 677777
Q ss_pred HHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcc-cccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc
Q 017890 193 VLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKL-NYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT 271 (364)
Q Consensus 193 ~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~-~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~ 271 (364)
+-+..|.- +-|.. .+ -.+++..+...+. .-.+..|+-++.++.|+|+|.|..++++++.||+++|||++
T Consensus 154 HKiLTGR~--~~f~~--Rq------~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGal 223 (701)
T PLN02225 154 HKVLTRRW--SAIPS--RQ------KNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATI 223 (701)
T ss_pred hhHhcCCh--hhcCc--cc------cCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcch
Confidence 77777752 22221 11 1123333333232 22346799999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHcCCCEEEEEEcCCcccccc--------cccc--------------------------cCC--ccH-
Q 017890 272 SEGDFHAALNFAAVMEAPVVFICRNNGWAISTN--------ISEQ--------------------------FRS--DGI- 314 (364)
Q Consensus 272 ~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~--------~~~~--------------------------~~~--~~i- 314 (364)
.-|..+||||-|+..+-++|+|+++|+.+|+.+ +... .+. ..+
T Consensus 224 tgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 303 (701)
T PLN02225 224 TAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWA 303 (701)
T ss_pred hhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999999999999999999999877 2100 000 000
Q ss_pred --------------H-HHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 315 --------------V-VKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 315 --------------a-~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
. ..++.+|+.++ .|||||++++.++++++++. ..++|+||+++|-
T Consensus 304 ~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~--~~~~PvlvHv~T~ 364 (701)
T PLN02225 304 AKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSL--DSMGPVLVHVITE 364 (701)
T ss_pred HHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcC--CCCCCEEEEEEec
Confidence 1 35678899998 58999999999999998763 1248999999985
|
|
| >PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-16 Score=135.68 Aligned_cols=114 Identities=29% Similarity=0.425 Sum_probs=92.6
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc----c---
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI----S--- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~----~--- 306 (364)
..++||+++|.|+|+++| .++++||+++|||++.+. ..| |.+|.++++|+++||.||+ |++.... .
T Consensus 26 ~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~~ 99 (153)
T PF02775_consen 26 GFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMS-LQE-LATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGGR 99 (153)
T ss_dssp TTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHH-GGG-HHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTSTC
T ss_pred CccccCCHHHhhhHHHhh----cCcceeEEecCCcceeec-cch-hHHHhhccceEEEEEEeCCcceEeccccccCcCcc
Confidence 468999999999999987 478999999999999875 444 9999999999977777665 6553211 1
Q ss_pred ---cc---cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 307 ---EQ---FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 307 ---~~---~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
.. ....++.+.+++||+++.+|+..|++++.+++++|++ .++|+|||+
T Consensus 100 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~----~~gp~vIeV 153 (153)
T PF02775_consen 100 FSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALE----SGGPAVIEV 153 (153)
T ss_dssp HHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH----SSSEEEEEE
T ss_pred cccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh----CCCcEEEEc
Confidence 11 3456899999999999999987777999999999985 689999996
|
It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A .... |
| >TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=138.27 Aligned_cols=113 Identities=20% Similarity=0.331 Sum_probs=89.8
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCC-ccccccccccc-CCc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNG-WAISTNISEQF-RSD 312 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg-~ais~~~~~~~-~~~ 312 (364)
.|+||+++|.|+|+++|. +++|||++|||+++++ . .+|.+|+.+++ |+++||.||+ |++........ ...
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~-~-~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~ 113 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMN-L-GVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRT 113 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhh-h-hHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCC
Confidence 689999999999999884 6789999999999976 3 45999999995 9988887775 77644211111 246
Q ss_pred cHHHHHhhcCeEEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 313 GIVVKGRAYGIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 313 ~ia~~a~a~G~~~~~-VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
++++.|++||+++.+ |+ +++++.++++ +++ .++|+|||+.+.+
T Consensus 114 d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~~----~~~p~li~v~~~~ 157 (181)
T TIGR03846 114 DLELVAKAAGIRNVEKVA--DEEELRDALK-ALA----MKGPTFIHVKVKP 157 (181)
T ss_pred CHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HHc----CCCCEEEEEEeCC
Confidence 899999999999998 75 7889988885 553 5789999999853
|
Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=158.89 Aligned_cols=116 Identities=25% Similarity=0.354 Sum_probs=96.8
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccc---------cc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIST---------NI 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~---------~~ 305 (364)
.|+||+++|.|+|+++|. ++++|||++|||++++. ..| |.+|+++++|+++||.|| +|++.. +.
T Consensus 406 ~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~ 479 (535)
T PRK07524 406 YGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-LPE-LASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPV 479 (535)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCcc
Confidence 489999999999999884 78899999999999874 666 999999999998888777 686432 11
Q ss_pred ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 306 SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 306 ~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
.......|+.+.|++||+++++|+ +++++.++++++++ .++|+|||+++.|+
T Consensus 480 ~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~ 531 (535)
T PRK07524 480 GVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFA----RPGPTLIEVDQACW 531 (535)
T ss_pred ccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCcc
Confidence 112234689999999999999997 89999999998876 58999999999986
|
|
| >cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.8e-16 Score=138.30 Aligned_cols=111 Identities=23% Similarity=0.282 Sum_probs=89.2
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc---------
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS--------- 306 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~--------- 306 (364)
+.||+++|.|+|+++|. +++|||++|||++.+. ..| |.+|.++++|+++||.||+ |++.....
T Consensus 51 g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~-~~e-L~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~~ 123 (175)
T cd02009 51 SGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD-LNG-LLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFE 123 (175)
T ss_pred cchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh-HHH-HHhccccCCCeEEEEEECCCCchheeccCCcccchhh
Confidence 78999999999999884 6789999999999975 444 9999999999977776665 66422111
Q ss_pred ccc---CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 307 EQF---RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 307 ~~~---~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
... ...++.+.|++||+++++|+ +++++.+++++|++ .++|+|||+++
T Consensus 124 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~v 174 (175)
T cd02009 124 RLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred hhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 011 24689999999999999997 79999999998875 57999999986
|
SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. |
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-15 Score=157.47 Aligned_cols=120 Identities=23% Similarity=0.303 Sum_probs=99.6
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~--------- 305 (364)
.++||+++|.|+|+++| .++++|||++|||+++++...+++++|.++++|+++||.|| +|++....
T Consensus 429 ~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~ 504 (569)
T PRK08327 429 AGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGY 504 (569)
T ss_pred CCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccc
Confidence 48999999999999876 47899999999999999765557999999999998888888 57753210
Q ss_pred --------cccc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 306 --------SEQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 306 --------~~~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
.... ...++++.+++||+++.+|+ +.+++.+++++|++.++++++|+|||+.+-
T Consensus 505 ~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 505 AARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred cccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 0111 34689999999999999998 899999999999987777778999999874
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-15 Score=158.96 Aligned_cols=119 Identities=24% Similarity=0.308 Sum_probs=95.6
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-----c--
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS-----E-- 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~-----~-- 307 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|.++++|+++||.||+ |++..... .
T Consensus 417 ~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~~ 490 (588)
T TIGR01504 417 AGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM-IEE-LAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDYC 490 (588)
T ss_pred cccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHhccccc
Confidence 489999999999998884 78899999999999985 555 9999999999987777775 76532110 0
Q ss_pred ---cc----------CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 ---QF----------RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ---~~----------~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.. ...|+++.|++||+++.+|+ +++++.+++++|++.+.+.++|+|||+++-+
T Consensus 491 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 491 VQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred ceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 00 13689999999999999997 7999999999998654445899999999854
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-15 Score=154.75 Aligned_cols=114 Identities=32% Similarity=0.438 Sum_probs=93.9
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc--------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI-------- 305 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~-------- 305 (364)
.+|+||+++|.|+|+++|. ++++|||++|||+++++ . ++|.+|.++++|+++||.||+ |++....
T Consensus 405 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~ 478 (530)
T PRK07092 405 ASGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYS-I-QALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRD 478 (530)
T ss_pred CCCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhh-H-HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCC
Confidence 3589999999999999884 57899999999999986 3 669999999999988888887 8764221
Q ss_pred --ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 306 --SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 306 --~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.......++++.+++||+++++|+ +..++.++++++++ .++|+|||+++
T Consensus 479 ~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~ 529 (530)
T PRK07092 479 VPGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARALA----ADGPVLVEVEV 529 (530)
T ss_pred CCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEc
Confidence 112245689999999999999998 57888888877764 68999999986
|
|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-15 Score=154.66 Aligned_cols=113 Identities=24% Similarity=0.279 Sum_probs=92.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. ++++|||++|||++++. .+| |.+|.++++|+++||.||+ |++....
T Consensus 388 ~gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~m~-~qE-L~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~ 461 (518)
T PRK12474 388 GGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAYT-MQA-LWTMARENLDVTVVIFANRSYAILNGELQRVGAQGA 461 (518)
T ss_pred CCccCccHHHHHHHHHHC----CCCcEEEEEcCchhcch-HHH-HHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCC
Confidence 489999999999999885 78899999999999985 555 9999999999877777775 8653210
Q ss_pred cc------ccC--CccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 306 SE------QFR--SDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 306 ~~------~~~--~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.. ... ..|+++.|++||+++.+|+ +++++.+++++|++ .++|+|||+++
T Consensus 462 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~~----~~~p~liev~~ 518 (518)
T PRK12474 462 GRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMA----QRGPRLIEAMI 518 (518)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 00 011 2479999999999999998 68999999998875 57999999974
|
|
| >cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.5e-15 Score=134.21 Aligned_cols=114 Identities=20% Similarity=0.183 Sum_probs=88.2
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCc-cccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-c-----
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGG-TSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE-Q----- 308 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa-~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~-~----- 308 (364)
++||+++|.|+|+++|. ++++||++.|||+ ++++ ..| |.+|.++++|+++||.||+ |++...... .
T Consensus 51 g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m~-~~e-L~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~ 124 (193)
T cd03375 51 TLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAIG-GNH-FIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGF 124 (193)
T ss_pred hhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhcc-HHH-HHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCC
Confidence 78999999999998874 7899999999999 4664 444 9999999999987777775 665431110 0
Q ss_pred ----------cCCccHHHHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 309 ----------FRSDGIVVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 309 ----------~~~~~ia~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
....++.+.+++||++.+ ++.-.++.++.+++++|++ .++|+|||+++
T Consensus 125 ~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~----~~gp~vIev~~ 183 (193)
T cd03375 125 KTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLS 183 (193)
T ss_pred cccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh----cCCCEEEEEEC
Confidence 012578999999999985 2233479999999999986 58899999975
|
In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity. |
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-15 Score=156.03 Aligned_cols=116 Identities=28% Similarity=0.397 Sum_probs=95.5
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccccccc----
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISEQF---- 309 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~~~---- 309 (364)
..|+||+++|.|+|+++|. +++.|||+.|||+|++. ..| |.+|.++++|+++||.||+ |++....++..
T Consensus 406 ~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~m~-~qE-L~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~~ 479 (550)
T COG0028 406 GLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMN-GQE-LETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGGR 479 (550)
T ss_pred CCccccchHHHHHHHHhhC----CCCcEEEEEcccHHhcc-HHH-HHHHHHhCCCEEEEEEECCccccchHHHHHhcCCC
Confidence 4589999999999998774 78999999999999985 555 9999999999998888887 66543221111
Q ss_pred -----CCcc-HHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 310 -----RSDG-IVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 310 -----~~~~-ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
-... +.+.|++||+++++|+ +.+++.+++++|++ .++|+|||+.+.+
T Consensus 480 ~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al~----~~~p~lidv~id~ 532 (550)
T COG0028 480 YSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALA----SDGPVLIDVVVDP 532 (550)
T ss_pred cceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 1223 9999999999999999 89999999999987 6899999999864
|
|
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.3e-15 Score=154.40 Aligned_cols=118 Identities=22% Similarity=0.149 Sum_probs=95.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE------- 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~------- 307 (364)
.|+||+++|.|+|+++|. ++++|||++|||++++. ..| |.+|.++++|+++||.||+ |++......
T Consensus 430 ~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~ 503 (565)
T PRK06154 430 TTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFGMT-GMD-FETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYR 503 (565)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECCccceeehhhhhhcCccc
Confidence 589999999999998884 68899999999999985 455 9999999999988877775 765321110
Q ss_pred -ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 -QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 -~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....|+++.|++||+++.+|+ +++++.+++++|++.++ .++|+|||+++.+
T Consensus 504 ~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v~~ 556 (565)
T PRK06154 504 ATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVK-EGTPALLEVITSE 556 (565)
T ss_pred ccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEeCh
Confidence 0113589999999999999998 79999999999986432 4689999999754
|
|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.3e-15 Score=155.02 Aligned_cols=115 Identities=18% Similarity=0.293 Sum_probs=93.9
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc--------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS-------- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~-------- 306 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. .+| |.+|.++++|+++||.||+ |++.....
T Consensus 421 ~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~ 494 (570)
T PRK06725 421 LGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQMN-IQE-LQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRL 494 (570)
T ss_pred cccccchhhHHHhhHhhc----CCCeEEEEEecchhhcc-HHH-HHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCcc
Confidence 489999999999998874 68899999999999864 666 9999999999988888886 55432110
Q ss_pred --cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++++.+++||+++.+|+ +++++.+++++|++ .++|+|||+++.+
T Consensus 495 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~id~ 546 (570)
T PRK06725 495 SESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFA----HEGPVVVDFCVEE 546 (570)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 11224689999999999999996 79999888888875 5899999999854
|
|
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.2e-15 Score=154.00 Aligned_cols=115 Identities=24% Similarity=0.316 Sum_probs=94.6
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccc--------ccc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIST--------NIS 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~--------~~~ 306 (364)
.|+||+++|.|+|+++|. ++++|||++|||+++++ ..| |.+|.++++|+++||.||+ |++.. +..
T Consensus 407 ~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~-~~e-l~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~ 480 (578)
T PRK06546 407 HGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSML-LGE-LLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPDF 480 (578)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhh-HHH-HHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCcc
Confidence 589999999999999885 67899999999999974 555 9999999999988888775 56531 100
Q ss_pred -cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 -EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 -~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......|+++.|++||+++.+|+ +++++.++++++++ .++|+|||+++-+
T Consensus 481 ~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 531 (578)
T PRK06546 481 GTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA----HPGPALVDVVTDP 531 (578)
T ss_pred cccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 11235689999999999999998 79999999998876 5899999999853
|
|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.7e-15 Score=153.28 Aligned_cols=115 Identities=19% Similarity=0.120 Sum_probs=94.3
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc--------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-------- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~-------- 306 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. .+| |.+|.++++|+++||.|| +|++.....
T Consensus 406 ~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~~~-~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~ 479 (542)
T PRK05858 406 FGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFGFS-LMD-VDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDV 479 (542)
T ss_pred ccccccchhHHHHHHHhC----CCCcEEEEEcCchhcCc-HHH-HHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCcc
Confidence 489999999999998874 68899999999999985 566 999999999997777776 476532110
Q ss_pred --cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......|+++.|++||+++.+|+ +++++.+++++|++ .++|+|||+++-+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~~~~ 531 (542)
T PRK05858 480 AADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFA----SGVPYLVNVLTDP 531 (542)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEECC
Confidence 11135689999999999999998 78999999999876 5899999999854
|
|
| >KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-14 Score=149.31 Aligned_cols=236 Identities=16% Similarity=0.143 Sum_probs=189.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccccccCCchhHHHHHHHhhc------CCCcEEEc-cCCchhHHH
Q 017890 124 FQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQ-GRFSFYLTTIGEEAINIGSAAAL------SADDFILP-QYREPGVLL 195 (364)
Q Consensus 124 ~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rq-Gri~f~~~~~GqEa~~vg~a~aL------~~~D~v~~-~yR~~g~ll 195 (364)
.-.++.|+-+-+|..+++.-.||+++...+.. .|. ...|.|.+.-|+...+ ..+++|++ .||++...|
T Consensus 243 ~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRF----GLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL 318 (1017)
T KOG0450|consen 243 PMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRF----GLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVL 318 (1017)
T ss_pred ccccCHHHHHHHHHHHHHhhHHHHHHhhhCCccccc----cccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHH
Confidence 34789999999999999999999999887753 332 2588999888876654 45789999 599998777
Q ss_pred hc--CCCHHHHHHHHhcCCCCCCCCC-CCccccCCC----------c--ccccccCCCcccchhHHHHHHHHhhhc----
Q 017890 196 WR--GYTLQQFANQVFANKADDGKGR-QMPIHYGSK----------K--LNYITISSPIATQLPQAVGVAYSLKME---- 256 (364)
Q Consensus 196 ~r--G~~~~~~l~~~~g~~~~~~~Gr-~mp~H~~~~----------~--~~~~~~sg~LG~~lp~AvG~A~A~k~~---- 256 (364)
+. -.++++++.+|-|.... -.|+ ....|.+.. . +.++.+.++|...-|+.+|-..|.+.-
T Consensus 319 ~NVvRKpl~qIfseF~g~~~~-DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~ 397 (1017)
T KOG0450|consen 319 ANVVRKPLEQIFSEFSGLEAA-DEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDE 397 (1017)
T ss_pred HHHHhhHHHHHHHhccCCCCC-cCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhcccc
Confidence 74 37899999999884432 2243 356666531 1 124667899999999999999998753
Q ss_pred -cCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCC---CEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCC
Q 017890 257 -KKDACAVAYTGDGGT-SEGDFHAALNFAAVMEA---PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGN 331 (364)
Q Consensus 257 -~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~L---PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGn 331 (364)
+.+...|.+.||++| .+|.++|.+.+...-+. ..|.||.||+.+..|-.....+.+...+.|++.++|.+.|+++
T Consensus 398 ~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaD 477 (1017)
T KOG0450|consen 398 EGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNAD 477 (1017)
T ss_pred ccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHHHhCCCeEeecCC
Confidence 344578999999998 79999998887665443 5799999999999886655556666778999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 332 DALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 332 D~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
|++||.-+.+-|.+.....++.++|++++||++
T Consensus 478 D~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~ 510 (1017)
T KOG0450|consen 478 DPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRH 510 (1017)
T ss_pred ChHHHHHHHHHHHHHHHHhccCeEEEEEEEeec
Confidence 999999999999999888999999999999975
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.2e-15 Score=155.32 Aligned_cols=115 Identities=23% Similarity=0.329 Sum_probs=94.2
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|.++++|+++||.||+ |++....
T Consensus 429 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~ 502 (595)
T PRK09107 429 LGTMGYGLPAALGVQIAH----PDALVIDIAGDASIQMC-IQE-MSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRL 502 (595)
T ss_pred chhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 489999999999999874 78899999999999984 555 9999999999988888776 7653210
Q ss_pred cccc--CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 SEQF--RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 ~~~~--~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.... ...|+++.|++||+++.+|+ +++++.+++++|.+ .++|+|||+.+.+
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 503 SHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 1111 23589999999999999997 79999999998876 4789999999864
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=152.08 Aligned_cols=116 Identities=26% Similarity=0.295 Sum_probs=93.7
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc--------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-------- 305 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~-------- 305 (364)
..|+||+++|.|+|+++|. ++++|||++|||++++. ..| |.+|.++++|+++||.|| +|++....
T Consensus 406 ~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~ 479 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSML-MGD-FLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLT 479 (574)
T ss_pred CcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhcc-HHH-HHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCcc
Confidence 4589999999999998874 67899999999999984 566 999999999987776666 47763110
Q ss_pred -ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 -SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 -~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.......|+++.|++||+++.+|+ +++++.+++++|++ .++|+|||+++-+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~i~~ 531 (574)
T PRK09124 480 DGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA----HDGPALVDVVTAK 531 (574)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 001234589999999999999997 79999999998875 5789999999853
|
|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7e-15 Score=155.11 Aligned_cols=120 Identities=24% Similarity=0.290 Sum_probs=96.7
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS------- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~------- 306 (364)
..|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|.++++|+++||.||+ |++.....
T Consensus 417 ~~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~ 490 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFL-IEE-LAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDY 490 (591)
T ss_pred ccccccchhhhHHhhhhhC----CCCcEEEEEccchhhcC-HHH-HHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCc
Confidence 3589999999999998874 67899999999999984 555 9999999999988888776 76432110
Q ss_pred ---ccc----------CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 ---EQF----------RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 ---~~~----------~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
..+ ...|+++.|++||+++.+|+ +++++.+|+++|.+...+.++|+|||+++.+
T Consensus 491 ~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 491 CVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred cceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 000 13689999999999999996 7999999999998654446899999999853
|
|
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.5e-15 Score=152.28 Aligned_cols=115 Identities=26% Similarity=0.356 Sum_probs=93.5
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc--------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-------- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~-------- 306 (364)
.|+||+++|.|+|++++ .++++|||++|||+++++ . ++|.+|.++++|+++||.|| +|++....+
T Consensus 401 ~GsmG~~lp~aiGa~la----~p~~~vv~v~GDG~f~~~-~-~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~ 474 (542)
T PRK08266 401 QGTLGYGFPTALGAKVA----NPDRPVVSITGDGGFMFG-V-QELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRV 474 (542)
T ss_pred CcccccHHHHHHHHHHh----CCCCcEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 48999999999999877 468899999999999986 4 55999999999998877777 587532111
Q ss_pred --cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++++.|++||+++.+|+ +.+++.++++++.+ .++|+|||++++|
T Consensus 475 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~~ 526 (542)
T PRK08266 475 VASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAALA----HGGPVLIEVPVPR 526 (542)
T ss_pred ccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecC
Confidence 01123589999999999999998 58899998888875 5789999999975
|
|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=151.60 Aligned_cols=115 Identities=23% Similarity=0.383 Sum_probs=93.4
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc-----cc--
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-----SE-- 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~-----~~-- 307 (364)
.++||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|.++++|+++||.|| +|++.... ..
T Consensus 407 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~ 480 (539)
T TIGR02418 407 MQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFS-SME-LETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRSS 480 (539)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhch-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcc
Confidence 479999999999999884 67899999999999984 555 999999999997776666 57653211 10
Q ss_pred --ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 --QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 --~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....|+.+.|++||+++.+|+ +++++.+++++|++ .++|+|||+++.+
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 531 (539)
T TIGR02418 481 GVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME----VEGPVVVDIPVDY 531 (539)
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 1234689999999999999998 78999999998876 5789999999864
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=137.33 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=91.1
Q ss_pred cccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCC-ccccc----ccc
Q 017890 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAIST----NIS 306 (364)
Q Consensus 233 ~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~----~~~ 306 (364)
+...++||+++|.|+|++.+ .++++|||+.|||++ +++ +.| |.+|.++++|+++||.||+ |++.. +..
T Consensus 58 ~~~~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~m~-~~e-L~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~ 131 (235)
T cd03376 58 FENAAAVASGIEAALKALGR----GKDITVVAFAGDGGTADIG-FQA-LSGAAERGHDILYICYDNEAYMNTGIQRSGST 131 (235)
T ss_pred hcCHHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHhhH-HHH-HHHHHHcCCCeEEEEECCcccccCCCCCCCCC
Confidence 33457999999999998554 478899999999995 665 444 9999999999998888886 66311 100
Q ss_pred ----c-------------ccCCccHHHHHhhcCeEEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 307 ----E-------------QFRSDGIVVKGRAYGIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 307 ----~-------------~~~~~~ia~~a~a~G~~~~~-VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
. .....|+++.|++||++++. ++-.+++++.+++++|++ .++|+|||+.+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~ 199 (235)
T cd03376 132 PYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILS 199 (235)
T ss_pred CCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 0 11335899999999999873 455689999999999886 47899999975
|
PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity. |
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=150.95 Aligned_cols=113 Identities=27% Similarity=0.262 Sum_probs=90.5
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. ++++|||++|||++++. ..| |.+|.++++|+++||.|| +|++....
T Consensus 384 ~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~m~-~~E-L~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~ 457 (514)
T PRK07586 384 GGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMYT-IQA-LWTQARENLDVTTVIFANRAYAILRGELARVGAGNP 457 (514)
T ss_pred CcccccHHHHHHHHHHhC----CCCeEEEEEechHHHhH-HHH-HHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCC
Confidence 489999999999999884 68899999999999984 444 999999999987766655 58753210
Q ss_pred -c--c---cc--CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 306 -S--E---QF--RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 306 -~--~---~~--~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
. . .. ...|+++.|++||+++++|+ ++.++.+++++|++ .++|+|||+++
T Consensus 458 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~----~~~p~liev~~ 514 (514)
T PRK07586 458 GPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAALA----EPGPHLIEAVV 514 (514)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 0 0 01 23589999999999999997 68899999988875 57999999974
|
|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-14 Score=150.42 Aligned_cols=115 Identities=25% Similarity=0.349 Sum_probs=92.7
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc--------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-------- 305 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~-------- 305 (364)
..|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|.++++|+++||.|| +|++....
T Consensus 403 ~~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~ 476 (544)
T PRK07064 403 LGGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLN-LGE-LATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGR 476 (544)
T ss_pred CCCccccccchhhhhhhhC----cCCcEEEEEcchHhhhh-HHH-HHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCc
Confidence 3478999999999999884 67899999999999984 454 999999999997776666 57753211
Q ss_pred --ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 306 --SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 306 --~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
.......++++.|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.
T Consensus 477 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~ 528 (544)
T PRK07064 477 RYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA----KEGPVLVEVDML 528 (544)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEcc
Confidence 011234689999999999999997 68899999998875 578999999985
|
|
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.2e-14 Score=139.00 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=111.7
Q ss_pred hhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHH
Q 017890 167 EEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQA 246 (364)
Q Consensus 167 qEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~A 246 (364)
.|.+.-.+...+.++|.|+.. .|+...+++ .+. .+.++.|+ ..++ ..|+||+++|.|
T Consensus 174 r~~ai~~i~~~l~~~~iVV~~---------~G~~s~el~-~~~--------~~~~~~~~----~~f~-~~GsMG~a~p~A 230 (361)
T TIGR03297 174 REEAIAAILDHLPDNTVIVST---------TGKTSRELY-ELR--------DRIGQGHA----RDFL-TVGSMGHASQIA 230 (361)
T ss_pred HHHHHHHHHHhCCCCCEEEEC---------CCCCcHHHH-Hhh--------cccccCCC----CceE-eechhhhHHHHH
Confidence 344444566667777877765 233333332 221 23344443 2222 359999999999
Q ss_pred HHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCC-cccccccccccCCccHHHHHhhcCe-
Q 017890 247 VGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNG-WAISTNISEQFRSDGIVVKGRAYGI- 323 (364)
Q Consensus 247 vG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg-~ais~~~~~~~~~~~ia~~a~a~G~- 323 (364)
+|+|+|. ++++|||+.|||++.+. ..+|.+++.+++ |+++||.||+ |+............++.+.|++||+
T Consensus 231 lG~ala~----p~r~Vv~i~GDGsflm~--~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~d~~~iA~a~G~~ 304 (361)
T TIGR03297 231 LGLALAR----PDQRVVCLDGDGAALMH--MGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHLDFAQIAKACGYA 304 (361)
T ss_pred HHHHHHC----CCCCEEEEEChHHHHHH--HHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCCCHHHHHHHCCCc
Confidence 9999885 57899999999999863 345899999997 8988888776 5543221111234689999999997
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.+++|+ +.+++.++++++++ .++|+|||+++-+
T Consensus 305 ~~~~v~--~~~eL~~al~~a~~----~~gp~lIeV~v~~ 337 (361)
T TIGR03297 305 KVYEVS--TLEELETALTAASS----ANGPRLIEVKVRP 337 (361)
T ss_pred eEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecC
Confidence 567765 89999999998865 5789999998743
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-14 Score=151.13 Aligned_cols=116 Identities=17% Similarity=0.295 Sum_probs=93.0
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc-----c---
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-----S--- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~-----~--- 306 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|.++++|+++||.|| +|++.... .
T Consensus 407 ~gsmG~glpaAiGa~la~----p~r~Vv~i~GDGsf~m~-~~e-L~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~ 480 (575)
T TIGR02720 407 FATMGVGVPGAIAAKLNY----PDRQVFNLAGDGAFSMT-MQD-LLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLI 480 (575)
T ss_pred cchhhchHHHHHHHHHhC----CCCcEEEEEcccHHHhh-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcc
Confidence 489999999999998874 68899999999999984 555 999999999987776555 58753210 0
Q ss_pred -cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 307 -EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 307 -~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
..+...|+++.|++||+++.+|+ +.+++.++++++++ . +.++|+|||+++.
T Consensus 481 ~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~-~~~~p~liev~i~ 532 (575)
T TIGR02720 481 GVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-I-KQGKPVLIDAKIT 532 (575)
T ss_pred cccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-h-CCCCcEEEEEEeC
Confidence 01234689999999999999997 68899999999875 2 3579999999985
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=153.38 Aligned_cols=116 Identities=21% Similarity=0.292 Sum_probs=94.1
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-----c-
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS-----E- 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~-----~- 307 (364)
..|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|.++++|+++||.||+ |++..... .
T Consensus 432 ~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~ 505 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMN-IQE-LGTLAQYGINVKTVIINNGWQGMVRQWQESFYGER 505 (616)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchHhhhh-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 3589999999999998884 68899999999999974 555 9999999999988888776 55432110 0
Q ss_pred ----cc--CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 ----QF--RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ----~~--~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.. ...|+++.|++||+++++|+ +++++.+++++|++ .++|+|||+++.+
T Consensus 506 ~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 560 (616)
T PRK07418 506 YSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALA----HDGPVLIDVHVRR 560 (616)
T ss_pred ceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 01 23689999999999999997 79999999988876 5789999999853
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=151.89 Aligned_cols=116 Identities=22% Similarity=0.343 Sum_probs=93.3
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccc---------c
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTN---------I 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~---------~ 305 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|.++++|+++||.||+ |++... .
T Consensus 436 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m~-~~e-L~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~ 509 (587)
T PRK06965 436 LGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQMC-IQE-LSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRY 509 (587)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchhhhcC-HHH-HHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCc
Confidence 479999999999999884 67899999999999985 445 9999999999988887776 554221 1
Q ss_pred ccc-c-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 SEQ-F-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 ~~~-~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
... . ...|+++.|++||+++.+|+ +.+++.+++++|++. .++|+|||+.+.+
T Consensus 510 ~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lieV~i~~ 563 (587)
T PRK06965 510 SHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL---KDRTVFLDFQTDP 563 (587)
T ss_pred cccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEecc
Confidence 011 1 23589999999999999997 789999999998862 3689999999853
|
|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-14 Score=148.91 Aligned_cols=116 Identities=16% Similarity=0.293 Sum_probs=93.0
Q ss_pred cCCCcccchhHHHHHHHHhhhccC-CCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc-------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKK-DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI------- 305 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~-~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~------- 305 (364)
..|+||+++|.|+|+++|. + +++|||++|||++++. ..| |.+|.++++|+++||.|| +|++....
T Consensus 394 ~~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~~~-~~e-L~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~ 467 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFTMT-MME-LITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYP 467 (549)
T ss_pred CcchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHhhh-HHH-HHHHHHHCCCeEEEEEECCccchHHHHHHHhcCC
Confidence 3589999999999998874 4 7899999999999974 444 999999999987666665 57653210
Q ss_pred --ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 --SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 --~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.......|+.+.|++||+++.+|+ +++++..++++|++ .++|+|||+++.+
T Consensus 468 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 520 (549)
T PRK06457 468 EWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLN----TKGPAVLDAIVDP 520 (549)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 011224589999999999999998 79999999998875 5789999999853
|
|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-14 Score=148.46 Aligned_cols=116 Identities=23% Similarity=0.334 Sum_probs=93.2
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccc-cccc-----
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIST-NISE----- 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~-~~~~----- 307 (364)
..|+||+++|.|+|++++ .++++|||++|||++++. . .+|.+|+++++|+++||.||+ |++.. ....
T Consensus 413 ~~g~mG~glpaaiGa~la----~p~~~vv~i~GDGsf~~~-~-~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~ 486 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFLMN-G-QELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGR 486 (557)
T ss_pred CCccccchHHHHHHHHHh----CCCCcEEEEEcchHhhcc-H-HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCc
Confidence 358999999999998877 468899999999999873 3 559999999999998888887 76432 1110
Q ss_pred ----ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 ----QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ----~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++++.+++||+++.+|+ +++++.++++++++ .++|+|||+++-+
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~li~v~~~~ 539 (557)
T PRK08199 487 VSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERALA----SGKPALIEIRIDP 539 (557)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCH
Confidence 1123589999999999999998 68888888888775 5789999999853
|
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-14 Score=150.85 Aligned_cols=115 Identities=19% Similarity=0.313 Sum_probs=92.9
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc------cc
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI------SE 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~------~~ 307 (364)
..|+||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|.++++|+++||.||+ |++.... ..
T Consensus 428 ~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~ 501 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQMN-LQE-LGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGER 501 (585)
T ss_pred cccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhhhh-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 3589999999999999885 57899999999999974 455 9999999999988888886 5542110 00
Q ss_pred ------ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 308 ------QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 308 ------~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
.....++.+.+++||+++++|+ +.+++.+++++|++ .++|.|||+++-
T Consensus 502 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~v~ 555 (585)
T CHL00099 502 YSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD----YDGPVLIDCQVI 555 (585)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEEC
Confidence 1113589999999999999997 68899999988876 578999999985
|
|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-14 Score=148.60 Aligned_cols=115 Identities=27% Similarity=0.399 Sum_probs=92.7
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc-----c---
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI-----S--- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~-----~--- 306 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++ .++| |.+|.++++|+++||.||+ |++.... .
T Consensus 423 ~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m-~~~e-L~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~ 496 (571)
T PRK07710 423 LGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQM-TLQE-LSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRY 496 (571)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhh-hHHH-HHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcc
Confidence 489999999999999884 6789999999999998 4666 9999999999877776664 7653211 0
Q ss_pred ---cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 ---EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 ---~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++++.|++||+++.+|+ +.+++.+++++|++ .++|+|||+.+.+
T Consensus 497 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~vd~ 549 (571)
T PRK07710 497 SHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAIE----LQEPVVIDCRVLQ 549 (571)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 11134689999999999999997 57888888888775 5799999999863
|
|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-14 Score=148.51 Aligned_cols=118 Identities=25% Similarity=0.341 Sum_probs=94.7
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. +++.||+++|||+|++. ..| |.+|.+++||+++||.||+ |++....
T Consensus 420 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~ 493 (574)
T PRK07979 420 LGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQMN-IQE-LSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRH 493 (574)
T ss_pred ccchhhHHHHHHHHHHhC----CCCeEEEEEcchhhhcc-HHH-HHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCcc
Confidence 489999999999999884 67899999999999984 444 9999999999988877775 6653211
Q ss_pred ccc-c-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 SEQ-F-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 ~~~-~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
... . ...|+++.|++||+++++|+ +++++.+++++|.+.++ .++|+|||+++.+
T Consensus 494 ~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~-~~~p~lIeV~i~~ 549 (574)
T PRK07979 494 SQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVR-NNRLVFVDVTVDG 549 (574)
T ss_pred ccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccC-CCCcEEEEEEECC
Confidence 011 1 23689999999999999997 79999999999987433 3789999999854
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-14 Score=149.41 Aligned_cols=118 Identities=20% Similarity=0.282 Sum_probs=94.2
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-----c--
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-----E-- 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~-----~-- 307 (364)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..| |.+|.++++|+++||.|| +|++..... .
T Consensus 429 ~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~ 502 (579)
T TIGR03457 429 FGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMS-MNE-IMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRF 502 (579)
T ss_pred cccccchHHHHHhhhhhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcc
Confidence 489999999999998884 67899999999999985 555 999999999997777666 476532110 0
Q ss_pred ---ccCC-ccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 ---QFRS-DGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ---~~~~-~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.... .|+++.|++||+++.+|+ +++++.+++++|++.. +.++|+|||+++-+
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~-~~~~p~lieV~v~~ 558 (579)
T TIGR03457 503 VGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQ-AEGKTTVIEIVCTR 558 (579)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhC-CCCCcEEEEEEeCC
Confidence 1122 489999999999999997 7999999999998643 24689999999854
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-14 Score=147.29 Aligned_cols=115 Identities=19% Similarity=0.313 Sum_probs=92.9
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc-----c---
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-----S--- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~-----~--- 306 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|.++++|+++||.|| +|++.... .
T Consensus 405 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~ 478 (547)
T PRK08322 405 LATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMN-SQE-LETAVRLGLPLVVLILNDNAYGMIRWKQENMGFEDF 478 (547)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEcchhHhcc-HHH-HHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCcc
Confidence 479999999999998884 67899999999999975 455 999999999987666655 57753210 0
Q ss_pred -cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 -EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 -~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......|+++.|++||+++.+|+ +.+++.++++++.+ .++|+|||+.+.+
T Consensus 479 ~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 529 (547)
T PRK08322 479 GLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA----QPGVHVIDCPVDY 529 (547)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 11124689999999999999997 79999999998875 5799999999864
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-14 Score=148.64 Aligned_cols=115 Identities=20% Similarity=0.280 Sum_probs=93.8
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-----c--
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS-----E-- 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~-----~-- 307 (364)
.|+||+++|.|+|+++|. ++++||+++|||+|++. ..| |.+|.++++|+++||.||+ |++....+ .
T Consensus 420 ~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~ 493 (572)
T PRK06456 420 MGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFLMT-GTN-LATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKRI 493 (572)
T ss_pred cccccchhHHHHHHHHhC----CCCeEEEEEccchHhcc-hHH-HHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCCc
Confidence 489999999999999884 67899999999999985 455 9999999999987777775 77543111 0
Q ss_pred ---cc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 ---QF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ---~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.. ...|+++.|++||+++.+|+ +++++.+++++|.+ .++|+|||+.+.+
T Consensus 494 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 546 (572)
T PRK06456 494 VGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAIK----EDIPAVIRVPVDK 546 (572)
T ss_pred ccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 11 23689999999999999997 79999999988875 5789999999864
|
|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-14 Score=150.50 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=93.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc----cccC
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS----EQFR 310 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~----~~~~ 310 (364)
.|+||+++|.|+|+++|. ++++|||++|||+|++. .+| |.+|.++++|+++||.||+ |++..... ....
T Consensus 427 ~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~ 500 (578)
T PLN02573 427 YGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQVT-AQD-VSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVIK 500 (578)
T ss_pred hhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHhH-HHH-HHHHHHcCCCCEEEEEeCCceeEEEeecccCccccC
Confidence 589999999999999885 67899999999999984 455 9999999999877777665 77543211 1123
Q ss_pred CccHHHHHhhcC-----eEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 311 SDGIVVKGRAYG-----IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 311 ~~~ia~~a~a~G-----~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
..++++.|++|| +++.+|+ +.+++.+++++|++. +.++|+|||+++-
T Consensus 501 ~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~--~~~~p~lieV~v~ 552 (578)
T PLN02573 501 NWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE--KKDCLCFIEVIVH 552 (578)
T ss_pred CCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh--CCCCcEEEEEEcC
Confidence 468999999985 8999998 689999999998742 2478999999874
|
|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-14 Score=148.09 Aligned_cols=115 Identities=27% Similarity=0.394 Sum_probs=92.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE------- 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~------- 307 (364)
.++||+++|.|+|+++| +++++|||++|||++++ ..++|++|.++++|+++||.||+ |++....+.
T Consensus 436 ~gsmG~~l~~aiGa~la----~~~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~ 509 (578)
T PRK06112 436 LAGLGWGVPMAIGAKVA----RPGAPVICLVGDGGFAH--VWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHT 509 (578)
T ss_pred ccccccHHHHHHHHHhh----CCCCcEEEEEcchHHHh--HHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCcc
Confidence 47899999999999877 46789999999999986 35669999999999988888886 443211100
Q ss_pred ---ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 ---QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ---~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++++.|++||+++++|+ +++++.+++++|++ .++|+|||+++-+
T Consensus 510 ~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 561 (578)
T PRK06112 510 DACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAMA----APGPTLIEVITDP 561 (578)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEcCc
Confidence 1124579999999999999998 68899888888875 5799999999854
|
|
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-14 Score=149.54 Aligned_cols=114 Identities=19% Similarity=0.244 Sum_probs=91.3
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc------cc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------EQ 308 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~------~~ 308 (364)
.|+||+++|.|+|+++|. ++++|||++|||++++. ..| |.+|.++++|+++||.|| +|++..... ..
T Consensus 403 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~E-L~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~ 476 (539)
T TIGR03393 403 WGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQLT-IQE-LGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYND 476 (539)
T ss_pred hhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHHhH-HHH-HHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCc
Confidence 489999999999998874 78899999999999984 444 999999999987666666 576532111 11
Q ss_pred cCCccHHHHHhhcCeE----EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 309 FRSDGIVVKGRAYGIR----SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 309 ~~~~~ia~~a~a~G~~----~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
....++++.+++||++ +.+|+ +.+++.+++++|++ .++|+|||+++-
T Consensus 477 ~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~ 527 (539)
T TIGR03393 477 IALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVAA----HERLSLIEVVLP 527 (539)
T ss_pred CCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHhc----cCCeEEEEEEcC
Confidence 2346899999999985 88997 78899999988875 578999999874
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria. |
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-14 Score=148.79 Aligned_cols=115 Identities=23% Similarity=0.309 Sum_probs=92.8
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|.++++|+++||.|| +|++....
T Consensus 407 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~~e-L~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~ 480 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSMV-MQD-FVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEY 480 (576)
T ss_pred chhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhhh-HHH-HHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcc
Confidence 489999999999998874 67899999999999985 555 999999999987666666 57653210
Q ss_pred ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 ~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.......|+++.|++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~vd~ 531 (576)
T PRK08611 481 AIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEALA----QDKPVIIDVYVDP 531 (576)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 011234689999999999999997 78999999988875 5899999999864
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-14 Score=147.30 Aligned_cols=117 Identities=23% Similarity=0.324 Sum_probs=93.4
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccc---------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTN--------- 304 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~--------- 304 (364)
..|+||+++|.|+|+++|. ++++|||++|||++++. . ++|.+|.++++|+++||.||+ |++...
T Consensus 419 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~ 492 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN-I-QELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGR 492 (574)
T ss_pred CcccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCc
Confidence 3588999999999999884 57899999999999985 4 559999999999988888886 543211
Q ss_pred -cccc-cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 305 -ISEQ-FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 305 -~~~~-~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.... ....++++.|++||+++++|+ +.+++..++++|++. .++|+|||+++-+
T Consensus 493 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 493 HSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred ccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 0011 123589999999999999997 688999999888762 3689999999864
|
|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-14 Score=148.63 Aligned_cols=115 Identities=19% Similarity=0.319 Sum_probs=92.5
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-----c--
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-----E-- 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~-----~-- 307 (364)
.++||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|.++++|+++||.|| +|++..... .
T Consensus 413 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~~ 486 (552)
T PRK08617 413 MQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFS-AME-LETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRSS 486 (552)
T ss_pred cccccccccHHHhhHhhc----CCCcEEEEEechHHhhh-HHH-HHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCcc
Confidence 479999999999998874 67899999999999984 555 999999999997766666 476532110 0
Q ss_pred --ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 --QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 --~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++++.|++||+++.+|. +++++.+++++|++ .++|+|||+++.+
T Consensus 487 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~liev~~~~ 537 (552)
T PRK08617 487 GVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREALA----TDGPVVIDIPVDY 537 (552)
T ss_pred cCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCcEEEEEEecc
Confidence 1124689999999999999997 78999999988875 5789999999864
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.4e-14 Score=148.27 Aligned_cols=115 Identities=22% Similarity=0.258 Sum_probs=92.4
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccc---------c
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTN---------I 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~---------~ 305 (364)
.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|.++++|+++||.||+ |++... .
T Consensus 425 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~ 498 (585)
T PLN02470 425 LGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMN-IQE-LATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANR 498 (585)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCce
Confidence 489999999999999884 67899999999999985 455 9999999999977777664 654311 0
Q ss_pred ccc-cC--------CccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 SEQ-FR--------SDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 ~~~-~~--------~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
... .. ..++++.|++||+++.+|+ +.+++.+++++|++ .++|+|||+++-+
T Consensus 499 ~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~i~~ 558 (585)
T PLN02470 499 AHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD----TPGPYLLDVIVPH 558 (585)
T ss_pred eeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 000 00 1589999999999999997 78999999999876 4789999999853
|
|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.6e-14 Score=146.85 Aligned_cols=115 Identities=24% Similarity=0.356 Sum_probs=92.9
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccc---------c
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTN---------I 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~---------~ 305 (364)
.|+||+++|.|+|+++|. ++++|||++|||++++. ..| |.+|.++++|+++||.||+ |++... .
T Consensus 413 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~ 486 (561)
T PRK06048 413 LGTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQMN-SQE-LATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRY 486 (561)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEeCchhhcc-HHH-HHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcc
Confidence 379999999999999884 67899999999999985 555 9999999999977777665 664321 0
Q ss_pred ccc--cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 SEQ--FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 ~~~--~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
... ....|+++.|++||+++++|+ +++++.+++++|++ .++|+|||+++-+
T Consensus 487 ~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~----~~~p~liev~~~~ 539 (561)
T PRK06048 487 SHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVA----SDRPVVIDFIVEC 539 (561)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 001 134689999999999999998 68899999998875 5799999999853
|
|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-14 Score=147.01 Aligned_cols=116 Identities=25% Similarity=0.379 Sum_probs=93.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|.++++|+++||.||+ |++....
T Consensus 420 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~ 493 (572)
T PRK08979 420 LGTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQMN-IQE-LSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRH 493 (572)
T ss_pred cccccchhhHHHhhhhhC----CCCeEEEEEcchHhhcc-HHH-HHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 479999999999998884 67899999999999985 455 9999999999987777775 6643211
Q ss_pred -cccc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 -SEQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 -~~~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.... ...|+++.|++||+++.+|+ ++.++..++++|.+. .++|+|||+++-+
T Consensus 494 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 547 (572)
T PRK08979 494 SHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM---KDRLVFVDINVDE 547 (572)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 0111 23689999999999999998 789999999988752 3789999999853
|
|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.8e-14 Score=146.28 Aligned_cols=115 Identities=19% Similarity=0.312 Sum_probs=94.6
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc--------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS-------- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~-------- 306 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. .+| |.+|.++++|+++||.||+ |++....+
T Consensus 418 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~~ 491 (564)
T PRK08155 418 LGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQSLFYGQRV 491 (564)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCCe
Confidence 479999999999999885 67899999999999984 677 9999999999988888776 77643211
Q ss_pred --ccc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
..+ ...++++.|++||+++++|+ +.+++.+++++|++ .++|+|||+.+-+
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~~~~ 544 (564)
T PRK08155 492 FAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN----RPGPALIHVRIDA 544 (564)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 111 23689999999999999998 68899998888875 5789999999853
|
|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=9e-14 Score=145.89 Aligned_cols=115 Identities=22% Similarity=0.338 Sum_probs=93.2
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc--------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS-------- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~-------- 306 (364)
.|+||+++|.|+|+++|. ++++|||++|||++++. ..| |.+|.++++|+|+||.||+ |++.....
T Consensus 413 ~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~ 486 (563)
T PRK08527 413 LGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERY 486 (563)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCce
Confidence 489999999999999884 57889999999999984 666 9999999999987777775 65432110
Q ss_pred --ccc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
... ...++.+.+++||+++++|+ +++++.+++++|++ .++|+|||+++.+
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~v~~ 539 (563)
T PRK08527 487 SETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE----SDKVALIDVKIDR 539 (563)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 011 23589999999999999997 78899999988875 5789999999874
|
|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.9e-14 Score=145.23 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=92.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccc------c--ccc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIS------T--NIS 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais------~--~~~ 306 (364)
.|+||+++|.|+|+++| ++++||+++|||++++. ..| |.+|+++++|+++||.||+ |... . +..
T Consensus 416 ~gsmG~~lpaaiGaala-----~~~~vv~i~GDGsf~m~-~~E-L~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~ 488 (554)
T TIGR03254 416 WGVMGIGMGYAIAAAVE-----TGKPVVALEGDSAFGFS-GME-VETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAP 488 (554)
T ss_pred CCcCCchHHHHHHHHhc-----CCCcEEEEEcCchhccc-HHH-HHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCc
Confidence 48999999999999997 26789999999999985 556 9999999999988888886 4111 0 000
Q ss_pred cc-cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 EQ-FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 ~~-~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.. ....++++.|++||+++.+|+ +++++.+++++|++ .++|+|||+++-+
T Consensus 489 ~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 539 (554)
T TIGR03254 489 TVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA----SGKPTLINAVIDP 539 (554)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 11 134689999999999999997 79999999998875 5789999999864
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.9e-14 Score=146.24 Aligned_cols=116 Identities=23% Similarity=0.316 Sum_probs=92.9
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|.++++|+++||.|| +|++....
T Consensus 422 ~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~~ 495 (574)
T PRK06466 422 LGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMN-IQE-LSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRH 495 (574)
T ss_pred cchhhchHHHHHHHHHhC----CCCeEEEEEcchhhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCce
Confidence 489999999999999884 67899999999999984 555 999999999997777766 47653210
Q ss_pred ccc--cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 SEQ--FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 ~~~--~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
... ....++++.|++||+++.+|+ +++++.+++++|.+. .++|+|||+++-+
T Consensus 496 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 496 SHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred eecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 001 123589999999999999997 789999999988752 2789999999853
|
|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.9e-14 Score=146.67 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=93.5
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHc-----CCCEEEEEEcCC-ccccccc----
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM-----EAPVVFICRNNG-WAISTNI---- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~-----~LPvIfVV~NNg-~ais~~~---- 305 (364)
.|+||+++|.|+|+++|. ++++|||++|||++++....| |.+|.++ ++|+++||.||+ |++....
T Consensus 414 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~~E-L~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~ 488 (597)
T PRK08273 414 LATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNGMAE-LITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVM 488 (597)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccchHH-HHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHh
Confidence 489999999999999884 678999999999998753455 9999999 899988887775 7543211
Q ss_pred -----c---cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 -----S---EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 -----~---~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
. ......|+++.|++||+++++|+ +.+++..++++|.+ .++|+|||+++.+
T Consensus 489 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~~ 547 (597)
T PRK08273 489 EGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA----ADRPVVLEVKTDP 547 (597)
T ss_pred cCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 01134679999999999999998 78999999998876 5899999999854
|
|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.6e-14 Score=148.84 Aligned_cols=118 Identities=18% Similarity=0.251 Sum_probs=94.2
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~------- 306 (364)
..|+||+++|.|+|+++|. ++++||+++|||+++++ ..| |.+|.++++|+++||.|| +|++.....
T Consensus 433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~ 506 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGIS-MNE-VMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNR 506 (588)
T ss_pred cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHhcc-HHH-HHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCC
Confidence 3489999999999998874 67899999999999986 556 889999999998777666 686532100
Q ss_pred ---ccc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 307 ---EQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 307 ---~~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
... ...++.+.|++||+++++|+ +++++.++++++++.. +.++|+|||+.+-
T Consensus 507 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~ 562 (588)
T PRK07525 507 FVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCN 562 (588)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEec
Confidence 011 23589999999999999997 7899999999998743 2368999999985
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.5e-14 Score=146.17 Aligned_cols=114 Identities=23% Similarity=0.363 Sum_probs=92.5
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccc------c---
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTN------I--- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~------~--- 305 (364)
.|+||+++|.|+|+++|. ++++||+++|||++++. ..| |.+|.++++|+++||.||+ |++... .
T Consensus 411 ~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~-~~e-L~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~ 484 (558)
T TIGR00118 411 LGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMN-LQE-LSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERY 484 (558)
T ss_pred cccccchhhHHHhhhhhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCce
Confidence 478999999999998874 67899999999999984 555 9999999999988888887 443210 0
Q ss_pred -c-cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 306 -S-EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 306 -~-~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
. ......++++.+++||+++++|+ +.+++.++++++++ .++|+|||+++.
T Consensus 485 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~~ 536 (558)
T TIGR00118 485 SHTHMGSLPDFVKLAEAYGIKGIRIE--KPEELDEKLKEALS----SNEPVLLDVVVD 536 (558)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeC
Confidence 0 11124689999999999999998 58899999988876 479999999985
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.1e-14 Score=145.25 Aligned_cols=115 Identities=18% Similarity=0.283 Sum_probs=92.5
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc-----c---
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-----S--- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~-----~--- 306 (364)
.|+||+++|.|+|+++|. ++++||+++|||+|++. ..| |.+|.++++|+++||.|| +|++.... .
T Consensus 400 ~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~~-~~e-L~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~ 473 (548)
T PRK08978 400 LGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMN-VQE-LGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERY 473 (548)
T ss_pred hhhhhchHHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 389999999999998884 67899999999999984 455 999999999997766666 57653211 0
Q ss_pred --ccc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
... ...|+++.|++||+++.+|+ +++++.+++++|++ .++|.|||+++-+
T Consensus 474 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~id~ 526 (548)
T PRK08978 474 SETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLN----SEGPYLLHVSIDE 526 (548)
T ss_pred eecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 001 23689999999999999997 78999999988875 5789999999864
|
|
| >cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways | Back alignment and domain information |
|---|
Probab=99.50 E-value=7e-14 Score=132.26 Aligned_cols=119 Identities=16% Similarity=0.199 Sum_probs=89.8
Q ss_pred cCCCcccchhHHHHHHHHh-hhccCCCeEEEEeCCCccc-cccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-----
Q 017890 235 ISSPIATQLPQAVGVAYSL-KMEKKDACAVAYTGDGGTS-EGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS----- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~-k~~~~~~~vv~~~GDGa~~-eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~----- 306 (364)
..++||+++|.|+|+++|. +...++++|||+.|||++. +| +.+ +..+..+++|+++||.||+ |+...-..
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~-l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA-LSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH-HHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 3489999999999998771 1113678999999999985 44 555 6778889999988888886 55432111
Q ss_pred -----------cccCCccHHHHHhhcCeEEEE---EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 307 -----------EQFRSDGIVVKGRAYGIRSIR---VDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 307 -----------~~~~~~~ia~~a~a~G~~~~~---VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
......|+++.|++||+++++ |+ +++++.+++++|++ +.++|+|||+.+
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~---~~~GP~lI~v~i 202 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAIS---RTDGPTFIHAYT 202 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHh---cCCCCEEEEEeC
Confidence 012346899999999999986 65 68999999988875 257899999984
|
Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors. |
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=143.81 Aligned_cols=113 Identities=17% Similarity=0.128 Sum_probs=91.7
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-c--ccc----c---cc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-W--AIS----T---NI 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~--ais----~---~~ 305 (364)
.|+||+++|.|+|+++| ++++||+++|||++++. ..| |.+|.++++|+++||.||+ | ... . +.
T Consensus 423 ~gsmG~glpaaiGa~la-----~~~~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~ 495 (569)
T PRK09259 423 WGVMGIGMGYAIAAAVE-----TGKPVVAIEGDSAFGFS-GME-VETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPS 495 (569)
T ss_pred CccccccHHHHHHHHhc-----CCCcEEEEecCcccccc-HHH-HHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCcc
Confidence 48999999999999987 26789999999999984 555 9999999999999988887 3 110 0 00
Q ss_pred ccc-cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 306 SEQ-FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 306 ~~~-~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
... ....++++.|++||+++++|+ +++++.+++++|++ .++|+|||+++-
T Consensus 496 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id 546 (569)
T PRK09259 496 PTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA----SGKPTLINVVID 546 (569)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEEC
Confidence 011 135689999999999999997 78999999998875 578999999975
|
|
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=144.49 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=91.2
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-----ccc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-----EQF 309 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~-----~~~ 309 (364)
.++||+++|.|+|+++|. ++++|+++|||++++. .+| |.+|.++++|+++||.|| +|++....+ ...
T Consensus 402 ~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~m~-~~E-L~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~ 474 (535)
T TIGR03394 402 YAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQMT-GWE-LGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDL 474 (535)
T ss_pred cchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHHhH-HHH-HHHHHHcCCCcEEEEEECCccceeehhccCCCcccC
Confidence 489999999999999884 3456889999999984 555 999999999987777766 577643211 112
Q ss_pred CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 310 RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 310 ~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
...++++.|++||+++.+|+ +.+++.+++++|++ ..++|+|||+++-+
T Consensus 475 ~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~~p~lIev~i~~ 522 (535)
T TIGR03394 475 DDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFA---TRGRFQLIEAMLPR 522 (535)
T ss_pred CCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHh---cCCCeEEEEEECCc
Confidence 34689999999999999998 78999999998875 24568999998754
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-13 Score=132.61 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=86.2
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcccc-ccHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-------
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-GDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE------- 307 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~e-G~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~------- 307 (364)
+++|.++|.|+|+++|. +++.||++.|||++.+ | ..| +.+|+++++|+++||.||+ |++......
T Consensus 68 ~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~~g-~~e-l~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~ 141 (277)
T PRK09628 68 TTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLAIG-GNH-TIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGM 141 (277)
T ss_pred eccccHHHHHHHHHHHC----CCCeEEEEECchHHHHhh-HHH-HHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCc
Confidence 47899999999998874 7899999999999853 3 223 6679999999988888775 665321000
Q ss_pred -----cc----CCccHHHHHhhcCeEEE---EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 308 -----QF----RSDGIVVKGRAYGIRSI---RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 308 -----~~----~~~~ia~~a~a~G~~~~---~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.. ...|+++.|++||++++ +|+ +++++.+++++|++ .++|+|||+.+
T Consensus 142 ~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~--~~~el~~al~~Al~----~~Gp~lIeV~~ 200 (277)
T PRK09628 142 WTVTAQYGNIDPTFDACKLATAAGASFVARESVI--DPQKLEKLLVKGFS----HKGFSFFDVFS 200 (277)
T ss_pred eeeeccCCCcCCCCCHHHHHHHCCCceEEEEccC--CHHHHHHHHHHHHh----CCCCEEEEEcC
Confidence 01 12367999999999975 565 79999999999886 58999999976
|
|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-13 Score=145.63 Aligned_cols=116 Identities=22% Similarity=0.325 Sum_probs=92.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. +++.|||++|||++++. .. +|.+|.++++|+++||.||+ |++....
T Consensus 446 ~G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~-eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~ 519 (612)
T PRK07789 446 LGTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQMT-NQ-ELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERY 519 (612)
T ss_pred cccccchhhhHHhhhccC----CCCcEEEEEcchhhhcc-HH-HHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCc
Confidence 478999999999998874 67899999999999984 44 49999999999877766664 7653210
Q ss_pred -cccc-----CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 -SEQF-----RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 -~~~~-----~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.... ...|+++.|++||+++.+|+ +.+++.+++++|++. .++|+|||+++.+
T Consensus 520 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 577 (612)
T PRK07789 520 SNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVGK 577 (612)
T ss_pred ceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEECC
Confidence 0011 12589999999999999997 789999999998863 3689999999854
|
|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.4e-13 Score=140.72 Aligned_cols=114 Identities=24% Similarity=0.361 Sum_probs=92.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|.++++|+++||.||+ |++....
T Consensus 418 ~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~ 491 (586)
T PRK06276 418 LGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMN-SQE-LATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQ 491 (586)
T ss_pred ccccccchhHHHhhhhhc----CCCcEEEEEcchHhhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCc
Confidence 479999999999998884 67789999999999985 455 9999999999987777775 7653211
Q ss_pred c-ccc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 306 S-EQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 306 ~-~~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
. ... ...++++.+++||+++.+|+ +++++.+++++|++ .++|+|||+.+-
T Consensus 492 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~ 543 (586)
T PRK06276 492 SEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIK----SGEPYLLDIIID 543 (586)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 0 011 23689999999999999997 78999999988875 578999999985
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-13 Score=141.31 Aligned_cols=114 Identities=20% Similarity=0.378 Sum_probs=90.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~--------- 305 (364)
.|+||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|.++++|+++||.|| +|++....
T Consensus 417 ~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~ 490 (566)
T PRK07282 417 LGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQMT-NQE-LAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGRT 490 (566)
T ss_pred cccccchhhHhheeheec----CCCcEEEEEcchhhhcc-HHH-HHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCCc
Confidence 489999999999998874 68899999999999984 455 999999999987776666 47653211
Q ss_pred -cccc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 -SEQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 -~~~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
...+ ...++++.|++||+++.+|+ +++++.++++ +.+ .++|+|||+.+-+
T Consensus 491 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~~----~~~p~lIeV~v~~ 542 (566)
T PRK07282 491 SESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VIT----EDVPMLIEVDISR 542 (566)
T ss_pred ccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hhc----CCCCEEEEEEeCC
Confidence 1112 24689999999999999997 6889988885 332 4799999998854
|
|
| >PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-13 Score=143.88 Aligned_cols=114 Identities=22% Similarity=0.209 Sum_probs=90.1
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc----c----
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI----S---- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~----~---- 306 (364)
.++||+++|.|+|+++| ++++|||++|||++++. ..| |.+|+++++|+++||.||+ |++..-. .
T Consensus 424 ~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~-~~e-L~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~ 496 (568)
T PRK07449 424 ASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHD-LNG-LLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVF 496 (568)
T ss_pred ccchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcC-cHH-HHhhcccCCCeEEEEEECCCCccccCCCCCCCcchh
Confidence 36799999999999887 36789999999999975 445 9999999999877777665 6642110 0
Q ss_pred ----cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 ----EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 ----~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++++.|++||+++.+|+ +.+++.+++++|++ .++|+|||+++-+
T Consensus 497 ~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~id~ 550 (568)
T PRK07449 497 ERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADALP----TPGLTVIEVKTNR 550 (568)
T ss_pred hHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHhc----CCCCEEEEEeCCh
Confidence 01124689999999999999997 78999999988864 5799999999853
|
|
| >PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.2e-13 Score=129.18 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=88.8
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc--------
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS-------- 306 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~-------- 306 (364)
+++|.++|+|+|+++| ++++.||++.|||++ ++| ..| |.+|+++++|+++||.||+ |+......
T Consensus 70 g~mG~alpaAiGaklA----~pd~~VV~i~GDG~~~~mg-~~e-L~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~ 143 (301)
T PRK05778 70 TLHGRAIAFATGAKLA----NPDLEVIVVGGDGDLASIG-GGH-FIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGS 143 (301)
T ss_pred hhhccHHHHHHHHHHH----CCCCcEEEEeCccHHHhcc-HHH-HHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCc
Confidence 7789999999999887 478899999999997 565 444 8999999999988888776 65432110
Q ss_pred --------cccCCccHHHHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 307 --------EQFRSDGIVVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 307 --------~~~~~~~ia~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
......++...|+++|+..+ ++.-.++.++.+++++|++ .++|+|||+.+
T Consensus 144 ~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~----~~GpalIeV~~ 202 (301)
T PRK05778 144 KTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS----HKGFAFIDVLS 202 (301)
T ss_pred ccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh----CCCCEEEEEcC
Confidence 00123589999999999986 3344489999999999886 58899999864
|
|
| >PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-12 Score=127.31 Aligned_cols=166 Identities=13% Similarity=0.091 Sum_probs=114.2
Q ss_pred cCccc-ccccCCchhHHHHHHHhhc-----CCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCC
Q 017890 155 QGRFS-FYLTTIGEEAINIGSAAAL-----SADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSK 228 (364)
Q Consensus 155 qGri~-f~~~~~GqEa~~vg~a~aL-----~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~ 228 (364)
.-|+. .|.+..|+=.+.-++..|+ .|+|.++.+ |-|..- .+..++.
T Consensus 3 ~~~~~~~~CpGCg~~~i~~~~~~a~~~l~~~p~d~ivvs--diG~~~--------~~~~~~~------------------ 54 (280)
T PRK11869 3 PEKYDIAWCPGCGNFGIRNALMKALSELNLKPRQVVIVS--GIGQAA--------KMPHYIN------------------ 54 (280)
T ss_pred cccCCCCCCcCCCCHHHHHHHHHHHHHcCCCCCCEEEEe--CchHhh--------hHHHHcc------------------
Confidence 34453 5777888888877776665 367777665 112100 0112211
Q ss_pred cccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccc----
Q 017890 229 KLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIST---- 303 (364)
Q Consensus 229 ~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~---- 303 (364)
.....+.+|.++|.|+|+++| ++++.||++.|||++..--+.| |.+|+++++|+++||.||+ |++..
T Consensus 55 ---~~~~~~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~iG~~e-L~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s 126 (280)
T PRK11869 55 ---VNGFHTLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYAEGGNH-LIHAIRRNPDITVLVHNNQVYGLTKGQAS 126 (280)
T ss_pred ---CCCCCcccccHHHHHHHHHHH----CCCCcEEEEECchHHhhCcHHH-HHHHHHhCcCcEEEEEECHHHhhhcceec
Confidence 011225589999999999776 4788999999999986322444 9999999999998888886 65422
Q ss_pred ---cc---------ccccCCccHHHHHhhcCeEEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 304 ---NI---------SEQFRSDGIVVKGRAYGIRSIRV-DGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 304 ---~~---------~~~~~~~~ia~~a~a~G~~~~~V-DGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
+. .......|+.+.|+++|++.+.. +-.++.++.+++++|++ .++|+|||+.+
T Consensus 127 ~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~ 192 (280)
T PRK11869 127 PTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQ 192 (280)
T ss_pred CCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 11 00112358999999999998873 24489999999999987 57999999875
|
|
| >PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-12 Score=124.96 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=87.7
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCc-cccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-------c
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGG-TSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS-------E 307 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa-~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~-------~ 307 (364)
+++|.++|.|+|+++| ++++.||++.|||+ +++| ..| |..|+++++|+++||.||+ |++..... .
T Consensus 69 g~mG~alpaAiGaklA----~Pd~~VV~i~GDG~~f~mg-~~e-L~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~ 142 (286)
T PRK11867 69 TIHGRALAIATGLKLA----NPDLTVIVVTGDGDALAIG-GNH-FIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGF 142 (286)
T ss_pred hhhhcHHHHHHHHHHh----CCCCcEEEEeCccHHHhCC-HHH-HHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCc
Confidence 6899999999999887 47899999999995 8876 444 8899999999988887775 66532110 0
Q ss_pred c-----c----CCccHHHHHhhcCeEEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 308 Q-----F----RSDGIVVKGRAYGIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 308 ~-----~----~~~~ia~~a~a~G~~~~~-VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
. . ...++.+.|.++|...+. +.-.++.++.+++++|++ .++|+|||+.+
T Consensus 143 ~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~----~~Gp~lIev~~ 201 (286)
T PRK11867 143 VTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN----HKGFSFVEILQ 201 (286)
T ss_pred ccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 0 124688899999998763 344579999999999886 57899999874
|
|
| >PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.9e-12 Score=121.08 Aligned_cols=115 Identities=21% Similarity=0.261 Sum_probs=89.9
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCC-ccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDG-GTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNIS------- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDG-a~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~------- 306 (364)
.+.+|.++|+|+|+++| .+++.||++.||| ++.+| ..| |..|+++++|+++||.||+ |+...-..
T Consensus 58 ~~~~G~alp~A~GaklA----~Pd~~VV~i~GDG~~f~ig-~~e-L~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g 131 (279)
T PRK11866 58 HGIHGRVLPIATGVKWA----NPKLTVIGYGGDGDGYGIG-LGH-LPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRG 131 (279)
T ss_pred ccccccHHHHHHHHHHH----CCCCcEEEEECChHHHHcc-HHH-HHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCC
Confidence 47789999999999888 4788999999999 68887 444 9999999999988888886 55533111
Q ss_pred cc-----c----CCccHHHHHhhcCeEEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 307 EQ-----F----RSDGIVVKGRAYGIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 307 ~~-----~----~~~~ia~~a~a~G~~~~~-VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.. . ...++.+.|+++|+..+. ....++.++.+++++|++ .++|.+||+..
T Consensus 132 ~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~----~~Gps~I~v~~ 191 (279)
T PRK11866 132 VKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK----HKGFSFIDVLS 191 (279)
T ss_pred ceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 00 0 012889999999997664 455789999999999886 58999999874
|
|
| >TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.2e-12 Score=121.82 Aligned_cols=113 Identities=15% Similarity=0.198 Sum_probs=84.1
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-------
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE------- 307 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~------- 307 (364)
+.+|.++|+|+|+++| ++++.|||+.|||++ .+| .. .|.+|+++++|+++||.||+ |++..-...
T Consensus 53 t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~~mg-~~-eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~ 126 (287)
T TIGR02177 53 GLHGRALPVATGIKLA----NPHLKVIVVGGDGDLYGIG-GN-HFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGV 126 (287)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEeCchHHHhcc-HH-HHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCc
Confidence 5579999999999877 478999999999996 466 33 49999999999988888885 655331110
Q ss_pred cc-----------CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 308 QF-----------RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 308 ~~-----------~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.. ...++...|.++|+.+...- .++.++.+++++|++ .++|+|||+.+
T Consensus 127 ~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL~~ai~~Al~----~~GpslIeV~~ 185 (287)
T TIGR02177 127 KTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHLKEIIKEAIN----HKGYALVDILQ 185 (287)
T ss_pred ceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 00 01235567778887766522 489999999999986 58899999875
|
Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes. |
| >COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=125.93 Aligned_cols=166 Identities=20% Similarity=0.297 Sum_probs=113.6
Q ss_pred CchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchh
Q 017890 165 IGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLP 244 (364)
Q Consensus 165 ~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp 244 (364)
+=||-.+--+...|+|+|+|+.- .| ..+|| +.++.. |.....-..+-+|++|+.+|
T Consensus 363 Ltq~~~w~~~~~fl~p~dviiae---tG-------------tS~FG-------~~~~~l-P~~~~~i~Q~lWGSIG~t~p 418 (557)
T COG3961 363 LTQEWLWNTVQNFLKPGDVIIAE---TG-------------TSFFG-------ALDIRL-PKGATFISQPLWGSIGYTLP 418 (557)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEc---cc-------------ccccc-------ceeeec-CCCCeEEcccchhhcccccH
Confidence 44666666777889999999873 11 12343 112110 11111123556899999999
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccc------cCCccHHHH
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQ------FRSDGIVVK 317 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~------~~~~~ia~~ 317 (364)
.|+|+++|. +++++|.++||||+|+ .++| +.+--+++| |+|||++|+||-|..-.+.. ...-++.+.
T Consensus 419 AalGa~~A~----~drR~IL~iGDGs~Ql-TvQE-iStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~~l 492 (557)
T COG3961 419 AALGAALAA----PDRRVILFIGDGSLQL-TVQE-ISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYTAL 492 (557)
T ss_pred hhhhhhhcC----CCccEEEEEcCchhhh-hHHH-HHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcccccccchhhh
Confidence 999999996 5799999999999997 4666 888899999 89999999999876544331 123467778
Q ss_pred HhhcCeEEEEE--eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 318 GRAYGIRSIRV--DGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 318 a~a~G~~~~~V--DGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
.++||..-... .-..-+++..+++.+.+ .++++.+|||++-++
T Consensus 493 ~~afg~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~i~lIEv~lp~~ 537 (557)
T COG3961 493 PEAFGAKNGEAKFRATTGEELALALDVAFA---NNDRIRLIEVMLPVL 537 (557)
T ss_pred hhhcCCCCceEEEeecChHHHHHHHHHHhc---CCCceEEEEEecCcc
Confidence 88888643322 11245667777776665 367899999997653
|
|
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-11 Score=129.12 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=91.0
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccccc------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISE------ 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~~------ 307 (364)
..++||.++|.|+|+++| .++++||+++|||++.+....| |.+|..+++|+++||.|| +|++......
T Consensus 401 ~~~~mG~~~~~AiGa~~a----~p~~~Vv~i~GDG~f~~~g~~e-L~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~ 475 (595)
T TIGR03336 401 TTLCMGASIGVASGLSKA----GEKQRIVAFIGDSTFFHTGIPG-LINAVYNKANITVVILDNRITAMTGHQPNPGTGVT 475 (595)
T ss_pred eeeccCchHHHHhhhhhc----CCCCCEEEEeccchhhhcCHHH-HHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCC
Confidence 358999999999999877 4678999999999998643555 889999999998887777 5765432110
Q ss_pred ----ccCCccHHHHHhhcCeEEEEEeC-CCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 308 ----QFRSDGIVVKGRAYGIRSIRVDG-NDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 308 ----~~~~~~ia~~a~a~G~~~~~VDG-nD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.....++++.+++||++.++|+. .|++++.++++++++ .++|++|++..
T Consensus 476 ~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~----~~gp~li~v~~ 529 (595)
T TIGR03336 476 GMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA----AEGVSVIIAKQ 529 (595)
T ss_pred CCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh----cCCCEEEEEcc
Confidence 11245799999999999999854 466778888888876 57899999853
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-09 Score=113.89 Aligned_cols=225 Identities=18% Similarity=0.208 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-cccccccCCchhHH--HHHHHhhcCCC------cEEEcc-CCchhHH---Hh
Q 017890 130 EVAVKMYSHMVTLQVMDSVLYEAQRQG-RFSFYLTTIGEEAI--NIGSAAALSAD------DFILPQ-YREPGVL---LW 196 (364)
Q Consensus 130 e~l~~ly~~M~~~R~~D~~~~~~~rqG-ri~f~~~~~GqEa~--~vg~a~aL~~~------D~v~~~-yR~~g~l---l~ 196 (364)
.++.+-++..++=+..-. ....++.| .++-.+++.---|+ -|+....+++. |.||-+ |=..++. ..
T Consensus 75 ~~lErrir~~irWna~a~-vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~ggDlV~~qgHaSPg~yArafL 153 (887)
T COG2609 75 LELERRIRSLIRWNAHAM-VLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGGDLVFFQGHASPGIYARAFL 153 (887)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCCceEEEecCCCchHHHHHHH
Confidence 345555666555555522 23333333 23322222211122 24555566654 999987 3333332 22
Q ss_pred cCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-cc-ccccCCCcccchhHHHHHHHHhhhc-------cCCCeEEEEeC
Q 017890 197 RGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LN-YITISSPIATQLPQAVGVAYSLKME-------KKDACAVAYTG 267 (364)
Q Consensus 197 rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~-~~~~sg~LG~~lp~AvG~A~A~k~~-------~~~~~vv~~~G 267 (364)
-|...++-|+.|+.-. .|.++++.|..+. +. ..+.+.+||-+.-.|+=.|.-+|+- .++.+|+||+|
T Consensus 154 eGRlseeqLdnFRqev----~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLG 229 (887)
T COG2609 154 EGRLTEEQLDNFRQEV----DGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLG 229 (887)
T ss_pred hccccHHHHHHHHHhc----cCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEec
Confidence 4655566677776533 2555655443332 23 3556789999999999888887762 46789999999
Q ss_pred CCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CccHHHHHhhcCeEEEEE-----------------
Q 017890 268 DGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGIRSIRV----------------- 328 (364)
Q Consensus 268 DGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~-~~~ia~~a~a~G~~~~~V----------------- 328 (364)
||++.|+...+|+.+|++++| ++||||+.|.-..+.|+...-. ...+...+++.||.++.|
T Consensus 230 DgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~gk 309 (887)
T COG2609 230 DGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGK 309 (887)
T ss_pred CcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcch
Confidence 999999999999999999999 9999999998777766532200 011222223333333322
Q ss_pred ----------------------------------------------------eCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 329 ----------------------------------------------------DGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 329 ----------------------------------------------------DGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
-|||+..|++|++.|.+. .++|++|
T Consensus 310 L~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA~~~A~~~---kg~Ptvi 386 (887)
T COG2609 310 LRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQEH---KGRPTVI 386 (887)
T ss_pred HHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHHHHHHhcC---CCCceEE
Confidence 378999999999999874 4589999
Q ss_pred EEEeec
Q 017890 357 EVRLNF 362 (364)
Q Consensus 357 ea~T~R 362 (364)
-++|++
T Consensus 387 lA~TIK 392 (887)
T COG2609 387 LAKTIK 392 (887)
T ss_pred EEeeec
Confidence 999974
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-11 Score=139.70 Aligned_cols=116 Identities=20% Similarity=0.177 Sum_probs=91.0
Q ss_pred ccCCCccc--chhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHc--CCCEEEEEEcCC-ccccccc---
Q 017890 234 TISSPIAT--QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM--EAPVVFICRNNG-WAISTNI--- 305 (364)
Q Consensus 234 ~~sg~LG~--~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~--~LPvIfVV~NNg-~ais~~~--- 305 (364)
...|++|. ++|.|+|+++|. +++|||++|||++++. ..| |.+|.++ ++|+++||.||+ |++....
T Consensus 756 ~~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~-~~E-L~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~ 828 (1655)
T PLN02980 756 GNRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHD-TNG-LSILSQRIARKPMTILVINNHGGAIFSLLPIA 828 (1655)
T ss_pred ecCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhh-hhH-HHHhhcccCCCCEEEEEEeCCCcHhhhcCccC
Confidence 34588998 599999999873 6789999999999973 555 9999884 999977777665 5543210
Q ss_pred ---cc----c----cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 ---SE----Q----FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 ---~~----~----~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.. . ....++.+.|++||+++.+|+ +++++.+++++|.+ .++|+|||+.|-|
T Consensus 829 ~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~~----~~~p~lIEV~t~~ 890 (1655)
T PLN02980 829 KRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQV----EQMDCVVEVESSI 890 (1655)
T ss_pred CCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhhc----cCCCEEEEEecCh
Confidence 00 1 123689999999999999998 78999999988775 5889999999965
|
|
| >KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5e-10 Score=113.95 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=91.0
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-C-cccccccccc----
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-G-WAISTNISEQ---- 308 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g-~ais~~~~~~---- 308 (364)
..|+||-+++.|+++|++. +++.|+|+.||++|.. +.+| +.++.+++||||.||-|| | |+..+...++
T Consensus 428 tfgTMGVG~Gfalaaa~~~----P~~~V~~veGDsaFGf-SaME-~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e~ 501 (571)
T KOG1185|consen 428 TFGTMGVGLGFALAAALAA----PDRKVVCVEGDSAFGF-SAME-LETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISEQ 501 (571)
T ss_pred cccccccchhHHHHHHhhC----CCCeEEEEecCcccCc-chhh-HHHHHHhcCCeEEEEecCCcccccCcccHHHHhhc
Confidence 4588888888777777664 9999999999999976 3566 999999999998777755 4 4433322111
Q ss_pred -----------cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 309 -----------FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 309 -----------~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
....++.+.+++||..++.|+ .++++..+++++.+ .+++|++|+++.-+
T Consensus 502 ~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q---~~~~psvINVlI~p 561 (571)
T KOG1185|consen 502 DPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQ---DTDKPSVINVLIGP 561 (571)
T ss_pred CcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHh---cCCCCeEEEEEecc
Confidence 123567789999999999998 79999999998876 46799999998754
|
|
| >PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-10 Score=113.36 Aligned_cols=170 Identities=23% Similarity=0.281 Sum_probs=107.0
Q ss_pred ccccccCCchhHHHHHHHhhcCC--CcEEEccCCchhHHHh------cC----------CC---HHHHHHHHhcCCCCCC
Q 017890 158 FSFYLTTIGEEAINIGSAAALSA--DDFILPQYREPGVLLW------RG----------YT---LQQFANQVFANKADDG 216 (364)
Q Consensus 158 i~f~~~~~GqEa~~vg~a~aL~~--~D~v~~~yR~~g~ll~------rG----------~~---~~~~l~~~~g~~~~~~ 216 (364)
++.|-++.|+-.+.+.....++. .|+++..--+||.... -| .+ +..++.+| .
T Consensus 47 lGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~F-S------ 119 (379)
T PF09364_consen 47 LGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQF-S------ 119 (379)
T ss_dssp -S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHB-T------
T ss_pred ccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhC-C------
Confidence 46778888888888877777653 4677776667764211 11 01 33444444 2
Q ss_pred CCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcC----C-C--
Q 017890 217 KGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVME----A-P-- 289 (364)
Q Consensus 217 ~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~----L-P-- 289 (364)
.-.++++|.....+|.+.--|-||+.+++|.|+++ +++|.+|+|++|||++.+|-. |+.|. + |
T Consensus 120 ~PgGipSH~~p~tPGsIhEGGELGYaLshA~GA~~----DnPdliv~~vvGDGEaETGpl------A~sWh~~kflnP~~ 189 (379)
T PF09364_consen 120 FPGGIPSHVSPETPGSIHEGGELGYALSHAFGAVF----DNPDLIVACVVGDGEAETGPL------AASWHSNKFLNPAT 189 (379)
T ss_dssp STTSB-SSS-TTSTT-S---SSTS-HHHHHHHHHT----T-TT-EEEEEEETTGGGSHHH------HHHGGGGGSS-TTT
T ss_pred CCCCCccccCcCCCCccCcCcchhhHHHHHhhccc----CCCCeEEEEEecCCcccCCcc------cccccccceeCccc
Confidence 22468889877667776677899999999998865 579999999999999999852 33331 1 3
Q ss_pred ---EEEEEEcCCccccccccc-ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHH
Q 017890 290 ---VVFICRNNGWAISTNISE-QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAR 344 (364)
Q Consensus 290 ---vIfVV~NNg~ais~~~~~-~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~ 344 (364)
|+-|+.=|||.|+.|+-- ..+.+.+.+.+++||+..+.|+|.|+.++...+..++
T Consensus 190 dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~al 248 (379)
T PF09364_consen 190 DGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAAL 248 (379)
T ss_dssp S-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHH
T ss_pred CceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHH
Confidence 778888899999988743 2345678899999999999999999988877664443
|
PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A. |
| >COG3962 Acetolactate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.7e-09 Score=105.49 Aligned_cols=164 Identities=14% Similarity=0.197 Sum_probs=116.2
Q ss_pred CchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchh
Q 017890 165 IGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLP 244 (364)
Q Consensus 165 ~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp 244 (364)
..|--+.-++.....++++|++. .|-.|.++-.-|.. +..+..|. ....|+||+-+.
T Consensus 395 ptq~~vigav~~~~~~~svvvcA---------AGsLPGdLhkLW~~-------~~p~~YH~-------EYgfSCMGYEia 451 (617)
T COG3962 395 PTQTQVIGAVQRTISDDSVVVCA---------AGSLPGDLHKLWRA-------GVPGTYHL-------EYGFSCMGYEIA 451 (617)
T ss_pred ccchhHHHHHHhhcCCCcEEEEe---------CCCCcHHHHHHhcc-------CCCCceee-------eecccccccccc
Confidence 33433433455556677777765 44445554433432 33344442 234589999999
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEE-cCCccccccc-----------------c
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR-NNGWAISTNI-----------------S 306 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~-NNg~ais~~~-----------------~ 306 (364)
-++|+ |+..+++-|++++|||++.| .+..|.++..++..+++++. |-||+-.... .
T Consensus 452 G~lG~----K~a~pdreV~vmVGDGSymM--lnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf~~~~r~~~~ 525 (617)
T COG3962 452 GGLGA----KAAEPDREVYVMVGDGSYMM--LNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASFNNLLRDTDH 525 (617)
T ss_pred ccccc----ccCCCCCeEEEEEcccchhh--hhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcchhhhhhhhhcc
Confidence 88887 45678999999999999986 67789999999998865554 5578532111 1
Q ss_pred -cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 307 -EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 307 -~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
+.....|++..|++||+.+++|. +++++.+|+++|++ ..+++||++.|.++
T Consensus 526 e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak~----~~~ttvi~I~t~P~ 577 (617)
T COG3962 526 EEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAKA----SDRTTVIVIDTDPK 577 (617)
T ss_pred cCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHHh----CCCCEEEEEecCCc
Confidence 23455789999999999999997 89999888887765 78999999998764
|
|
| >PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=99.34 Aligned_cols=125 Identities=21% Similarity=0.232 Sum_probs=99.0
Q ss_pred ccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCC-ccccc----
Q 017890 230 LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAIST---- 303 (364)
Q Consensus 230 ~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~---- 303 (364)
.++....+.+|.+.++|.|++.|.+..+++..||++.|||++ ..| + ++|.-|...+.++++||.||. |+..+
T Consensus 62 ~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG-~-~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S 139 (299)
T PRK11865 62 WNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIG-F-QSLSGAMERGHNILYLMYDNEAYMNTGIQRS 139 (299)
T ss_pred cccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhcc-H-HHHHHHHHcCCCeEEEEECCccccCCCCCCC
Confidence 345566789999999999999998876777899999999998 454 4 779999999999999999997 44321
Q ss_pred ---cc---------cc-----ccCCccHHHHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 304 ---NI---------SE-----QFRSDGIVVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 304 ---~~---------~~-----~~~~~~ia~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
|. .. .....|+...+.++|+..+ +++-.|+.++.+++++|.+ .++|.+|++.+
T Consensus 140 ~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~s 210 (299)
T PRK11865 140 GSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQ 210 (299)
T ss_pred CCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 11 00 2224578889999999777 6677799999999999987 58999999864
|
|
| >KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.6e-09 Score=105.73 Aligned_cols=113 Identities=22% Similarity=0.294 Sum_probs=91.2
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCc-ccccccc---------
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGW-AISTNIS--------- 306 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~-ais~~~~--------- 306 (364)
|.||.+||+|+|+..| +++..||-+-||++|.+. ..| |.++.+.++||-+++.||.- ++.+..+
T Consensus 524 GtMGfGLPAAIGAsVA----~P~~iViDIDGDaSF~Mt-~~E-Lat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~rys 597 (675)
T KOG4166|consen 524 GTMGFGLPAAIGASVA----NPDAIVIDIDGDASFIMT-VQE-LATIRQENLPVKILILNNEEQGMVTQWQDLFYEARYS 597 (675)
T ss_pred cccccCcchhhccccc----CcccEEEeccCCceeeee-hHh-hhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhhc
Confidence 7899999999999776 589999999999999874 566 99999999999888888864 3333211
Q ss_pred -cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 307 -EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 307 -~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
.....+++.+.|.++|++..||. .-+++.+.+++.+. .++|+|+|+.+-
T Consensus 598 HThQ~nPnf~klA~AmGikalRV~--K~edL~~k~kefls----TkGPvLleV~v~ 647 (675)
T KOG4166|consen 598 HTHQENPNFLKLAAAMGIKALRVT--KKEDLREKIKEFLS----TKGPVLLEVIVP 647 (675)
T ss_pred cccccCccHHHHHHhcCCchheee--hHHHHHHHHHHHhC----CCCCeEEEEEcc
Confidence 11124789999999999999997 46788888888775 789999999864
|
|
| >COG3960 Glyoxylate carboligase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.9e-09 Score=101.61 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=110.9
Q ss_pred HHHHHHHHhcCCCCC--C------CCCCCccccCCCcccc-cccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc
Q 017890 201 LQQFANQVFANKADD--G------KGRQMPIHYGSKKLNY-ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT 271 (364)
Q Consensus 201 ~~~~l~~~~g~~~~~--~------~Gr~mp~H~~~~~~~~-~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~ 271 (364)
..+.|++.||+..-+ + .|.|+ .|...+.+-+ -+..||||+.+|.|+|+-. ..+++.+|++.||-.+
T Consensus 375 vyeemn~~fgrd~~yvstiglsqia~aqf-lhv~~pr~wincgqagplgwtipaalgv~~----adp~r~vvalsgdydf 449 (592)
T COG3960 375 VYEEMNKAFGRDVCYVTTIGLSQIAAAQF-LHVFKPRHWINCGQAGPLGWTIPAALGVCA----ADPKRNVVAISGDYDF 449 (592)
T ss_pred HHHHHHhhcCCceeEEEeccHHHHhhhhh-hhhcCCcceeecCccCCcccccchhhceee----cCCCCceEEeecCchH
Confidence 345677777765422 1 22332 2333222222 2346999999999999854 4688999999999999
Q ss_pred ccccHHHHHHHHHHcCCCEEEEEEcCCcc-cccccc--------ccc------------CCccHHHHHhhcCeEEEEEeC
Q 017890 272 SEGDFHAALNFAAVMEAPVVFICRNNGWA-ISTNIS--------EQF------------RSDGIVVKGRAYGIRSIRVDG 330 (364)
Q Consensus 272 ~eG~~~EALn~Aa~~~LPvIfVV~NNg~a-is~~~~--------~~~------------~~~~ia~~a~a~G~~~~~VDG 330 (364)
+. ..|.|...+++++|.|.|+.||.|- .....+ -+. -+.|-.+.+++.|++.+||-
T Consensus 450 qf--mieelavgaq~k~pyihv~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~- 526 (592)
T COG3960 450 QF--LIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF- 526 (592)
T ss_pred HH--HHHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEec-
Confidence 85 5688999999999999999999982 111100 011 12345567899999999996
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 331 NDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 331 nD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
+++++..|+.+|.....+..-|++||+..-|.
T Consensus 527 -~p~e~a~af~~a~~lm~eh~vpvvve~ilerv 558 (592)
T COG3960 527 -KPEDIAPAFEQAKALMAQHRVPVVVEVILERV 558 (592)
T ss_pred -ChHHhhHHHHHHHHHHHhcCCCeeeehHHHHh
Confidence 78999999999998888888999999876653
|
|
| >KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.4e-08 Score=100.56 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=90.7
Q ss_pred ccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccc--
Q 017890 232 YITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQ-- 308 (364)
Q Consensus 232 ~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~-- 308 (364)
+...+|++|+.+|.++|++.|. ++++||.++|||++++ .++| +.++.+|++ |.||+++|+||-|....+..
T Consensus 410 ~q~~wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~ql-TvQe-iStmir~gl~~~if~~NN~GYTIE~~IH~~~Y 483 (561)
T KOG1184|consen 410 SQMQWGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQL-TVQE-ISTMIRWGLKPIIFLINNGGYTIEVEIHDGPY 483 (561)
T ss_pred EEEEEeeccccchhhhhhhhcc----CCceEEEEecCcccee-eHHH-HHHHHhcCCCcEEEEEeCCceEEEEeecCCCc
Confidence 3455799999999999999986 5689999999999998 4677 888999999 66888899999886554431
Q ss_pred --cCCccHHHHHhhcCeE-----EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 309 --FRSDGIVVKGRAYGIR-----SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 309 --~~~~~ia~~a~a~G~~-----~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
...-++.++.++||.. ..+|- .-.+..++.+.+.. .+++++.||||+...
T Consensus 484 n~I~~Wd~~~l~~afg~~~gk~~~~~v~--~~~e~~~~~~~~~~--~~~~~i~liEv~l~~ 540 (561)
T KOG1184|consen 484 NDIQNWDYTALLEAFGAGEGKYETHKVR--TEEELVEAIKDATF--EKNDKIRLIEVILPV 540 (561)
T ss_pred cccccchHHHHHHhhcCccceeEEeeec--cchHHHHHHhhhhh--cccCceEEEEEecCc
Confidence 1234677888888753 33332 33567777777763 256789999998653
|
|
| >COG3957 Phosphoketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.4e-06 Score=89.61 Aligned_cols=171 Identities=17% Similarity=0.182 Sum_probs=113.9
Q ss_pred ccccccCCchhHHHHHHHhhcCCC--cEEEccCCchhHHHh------cCC-------------CHHHHHHHHhcCCCCCC
Q 017890 158 FSFYLTTIGEEAINIGSAAALSAD--DFILPQYREPGVLLW------RGY-------------TLQQFANQVFANKADDG 216 (364)
Q Consensus 158 i~f~~~~~GqEa~~vg~a~aL~~~--D~v~~~yR~~g~ll~------rG~-------------~~~~~l~~~~g~~~~~~ 216 (364)
++.+-++.|.--+.+......+.- ++++..-.+|+...- -|. -+.+++.+|.
T Consensus 60 lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs------- 132 (793)
T COG3957 60 LGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFS------- 132 (793)
T ss_pred cccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhcc-------
Confidence 456777778777776666655543 444444444442111 121 1345555553
Q ss_pred CCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHH-c---CC-CEE
Q 017890 217 KGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAV-M---EA-PVV 291 (364)
Q Consensus 217 ~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~-~---~L-PvI 291 (364)
.-.++++|.....+|.+.-.|.||+++.+|.|+|+ .+++.++.|++|||+..+|.... -..+.. + +. .|+
T Consensus 133 ~PgGi~SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgplat-sWhs~kf~np~~dGavL 207 (793)
T COG3957 133 FPGGIGSHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGPLAT-SWHSNKFLNPARDGAVL 207 (793)
T ss_pred CCCCcccccCCCCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCcccc-ccccccccCccccCcee
Confidence 23348888877667877778999999999988875 57999999999999887774211 111111 1 11 478
Q ss_pred EEEEcCCcccccccccc-cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHH
Q 017890 292 FICRNNGWAISTNISEQ-FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAV 340 (364)
Q Consensus 292 fVV~NNg~ais~~~~~~-~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~ 340 (364)
-|..=|||.|+-|+.-. .+.+.+.+.+++||++-+-|+|.|+.++.+.+
T Consensus 208 PIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~m 257 (793)
T COG3957 208 PILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLM 257 (793)
T ss_pred eEEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhH
Confidence 88888999999886533 34556889999999999999998888744433
|
|
| >COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.6e-05 Score=75.47 Aligned_cols=115 Identities=18% Similarity=0.208 Sum_probs=85.6
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCC-ccccccHHHHHHHHHHcCCCEEEEEEcCC-cccc-------cccc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDG-GTSEGDFHAALNFAAVMEAPVVFICRNNG-WAIS-------TNIS 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDG-a~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais-------~~~~ 306 (364)
.+.-|-++++|.|+.+|. ++..||++.||| ++..|- ..|--|...+..|++||-||. |+.+ ||..
T Consensus 69 hs~~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG~--~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~G 142 (294)
T COG1013 69 HSLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIGG--NHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPKG 142 (294)
T ss_pred eeccCcchhhHHHHHHhc----cCCeEEEEecchhHhhhhh--HHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCCC
Confidence 356788889999998876 556899999999 557774 337778889999998888886 5432 2221
Q ss_pred cc---------c-CCccHHHHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 307 EQ---------F-RSDGIVVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 307 ~~---------~-~~~~ia~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.+ . ..-++...+.++|...+ ++---++..+.+.+++|+++ +||.+|++.+
T Consensus 143 ~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~----~Gps~I~v~s 203 (294)
T COG1013 143 AKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH----KGPSFIDVLS 203 (294)
T ss_pred ceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhc----cCCeEEEEec
Confidence 11 1 22378888999998666 66545799999999999884 6999999864
|
|
| >COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00074 Score=70.77 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=75.7
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCE-EEEEEcCCccccc--ccc-------ccc---
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPV-VFICRNNGWAIST--NIS-------EQF--- 309 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPv-IfVV~NNg~ais~--~~~-------~~~--- 309 (364)
++-|+|++.|. .+++|.++||=++-- |. -+|........|+ |+|++|||=+|-. |+. +.+
T Consensus 428 vSTA~Gi~~a~-----~~ptv~liGDLS~lh-D~-NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~F~tP 500 (566)
T COG1165 428 VSTALGIARAT-----QKPTVALIGDLSFLH-DL-NGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERLFGTP 500 (566)
T ss_pred HHHHhhhhhhc-----CCceEEEEechhhhh-cc-chHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHHHhcCCC
Confidence 56688888764 356999999999843 21 1244555556676 7777888877632 211 111
Q ss_pred CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 310 RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 310 ~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.+-|++..++.||+...+++ .+.++.+++..+.. ..+-.|||++|.|
T Consensus 501 h~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~~----~~g~~viEvkt~r 547 (566)
T COG1165 501 HGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAWR----RSGTTVIEVKTDR 547 (566)
T ss_pred CCCCHHHHHHHhCccccccC--cHHHHHHHHhhhcc----CCCcEEEEEecCh
Confidence 24589999999999999987 57788888877764 3568999999987
|
|
| >COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00012 Score=77.51 Aligned_cols=116 Identities=21% Similarity=0.223 Sum_probs=85.8
Q ss_pred cccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCCc-cccccccc---
Q 017890 233 ITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNGW-AISTNISE--- 307 (364)
Q Consensus 233 ~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg~-ais~~~~~--- 307 (364)
...+-.+|.+++.|-|++++. .+++|+++|||.| ..|. .+|.-|...+.+++++|.+|.+ ++++.+..
T Consensus 424 ~d~t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~ 496 (640)
T COG4231 424 VDTTTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGT 496 (640)
T ss_pred hhhhhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCCCc
Confidence 334556788788888887764 3789999999998 4443 4588888889999999888887 44332211
Q ss_pred c-------cCCccHHHHHhhcCeEEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 308 Q-------FRSDGIVVKGRAYGIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 308 ~-------~~~~~ia~~a~a~G~~~~~-VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
+ .....+.+..++.|+..++ ||=.|+.++.+++++|++ ..+|.+|.++
T Consensus 497 ~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale----~~gpsViiak 552 (640)
T COG4231 497 GVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALE----VPGPSVIIAK 552 (640)
T ss_pred ccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhc----CCCceEEEEc
Confidence 1 1234677888999998886 566899999999999987 4779988653
|
|
| >cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0023 Score=64.52 Aligned_cols=96 Identities=15% Similarity=0.202 Sum_probs=69.3
Q ss_pred CCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCC-cccc-------cccc---------cccCCccHHHHHhh
Q 017890 259 DACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAIS-------TNIS---------EQFRSDGIVVKGRA 320 (364)
Q Consensus 259 ~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais-------~~~~---------~~~~~~~ia~~a~a 320 (364)
+..||++.|||.. ..|. ..|.-|...+.+|++||-||. |+.+ ||.. .....-++...+.+
T Consensus 151 ~~~v~v~gGDG~~ydIG~--~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a 228 (365)
T cd03377 151 KKSVWIIGGDGWAYDIGY--GGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMS 228 (365)
T ss_pred ccceEEEecchhhhccch--hhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHH
Confidence 3579999999955 6763 336667777889988887775 6542 2211 11223578888999
Q ss_pred cCeEEE-EEe-CCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 321 YGIRSI-RVD-GNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 321 ~G~~~~-~VD-GnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
+|...+ ++- |-++.++.+++++|.+ .+||.+|++.+
T Consensus 229 ~g~~YVA~~s~~~~~~~~~~~i~eA~~----~~Gps~I~v~s 266 (365)
T cd03377 229 YGNVYVAQIALGANDNQTLKAFREAEA----YDGPSLIIAYS 266 (365)
T ss_pred cCCCEEEEEecccCHHHHHHHHHHHhc----CCCCEEEEEEc
Confidence 998766 553 4589999999999987 48999999875
|
This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra |
| >cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.019 Score=49.51 Aligned_cols=104 Identities=23% Similarity=0.195 Sum_probs=65.7
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEe-CCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYT-GDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~-GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
..+|.|.+.+ +. ..+++.. |.|..+ ..+++..|...++|+|+|+-..+..... .......+....++.+
T Consensus 48 ~~~A~G~a~~----~~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~--~~~~q~~~~~~~~~~~ 117 (154)
T cd06586 48 AGAAAGYARA----GG-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQA--KQTFQSMFDLGMYRSI 117 (154)
T ss_pred HHHHHHHHHh----hC-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhc--cCcccccCHHHHHHHh
Confidence 4456666654 23 3333333 888764 5577888888899999999766643211 1111223344556666
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
..-.+.+. +..++.+.+.+|...+....+|++|++
T Consensus 118 ~~~~~~~~--~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 118 PEANISSP--SPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred hheEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 65555554 567777777888777777788999975
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca |
| >cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.022 Score=49.57 Aligned_cols=106 Identities=22% Similarity=0.167 Sum_probs=67.1
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcC
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G 322 (364)
..+|.|.+++. ++-.++++..|=|..+ ..+++..|...++|+|+|+-+....-..... ....+..+..+.+-
T Consensus 47 ~~~A~g~~~~~---~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~--~q~~d~~~~~~~~~ 118 (155)
T cd07035 47 VGMADGYARAT---GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGA--FQEIDQVALFRPIT 118 (155)
T ss_pred HHHHHHHHHHH---CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCc--ccccCHHHHHHHHh
Confidence 34555665542 1222333333555554 5678888999999999998765532221111 11234445555554
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEE
Q 017890 323 IRSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEV 358 (364)
Q Consensus 323 ~~~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea 358 (364)
-...+++ +++++.+.+.+|.+.+... .+|+.|++
T Consensus 119 ~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 119 KWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred ceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 4567775 7889999999999988877 68999986
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio |
| >cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.035 Score=49.64 Aligned_cols=105 Identities=15% Similarity=0.092 Sum_probs=72.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++.-|...++|+|+|.-+....... .......|..+.++.+--.
T Consensus 53 mA~gyar~---tg~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 124 (164)
T cd07039 53 AASAEAKL---TGKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVPTDELG--TDYFQEVDLLALFKDVAVY 124 (164)
T ss_pred HHHHHHHH---hCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCcccccC--CCCCcccCHHHHHHHhhcE
Confidence 45555544 34445666666877776 4466888888999999999765532211 1112223566777777777
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..+|+ +++++.+++++|++.+....+|+.|++-
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP 157 (164)
T cd07039 125 NETVT--SPEQLPELLDRAIRTAIAKRGVAVLILP 157 (164)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 77887 7888999999998888877899999863
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ |
| >PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.018 Score=65.91 Aligned_cols=115 Identities=17% Similarity=0.093 Sum_probs=76.4
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCCc-ccccccc--cccC
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNGW-AISTNIS--EQFR 310 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg~-ais~~~~--~~~~ 310 (364)
....||.....++|.+.+. .++.||+.+|||.+ ..|. -+|.-|...+.|++++|.+|.. ++++... ...+
T Consensus 466 ~~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~--~al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~i~ 539 (1159)
T PRK13030 466 GLTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGS--LAIRQAVAAGANITYKILYNDAVAMTGGQPVDGSIS 539 (1159)
T ss_pred eeeccCccchhhceecccc----CCCCEEEEeccchhhhcCH--HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCCC
Confidence 3468898899999988763 34579999999998 4553 2677777888999998888886 5544322 2222
Q ss_pred CccHHHHHhhcCeEEEEEeCCCHHH----------------HHHHHHHHHHHhhcCCCcEEEEE
Q 017890 311 SDGIVVKGRAYGIRSIRVDGNDALA----------------VYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 311 ~~~ia~~a~a~G~~~~~VDGnD~~a----------------v~~a~~~A~~~ar~~~~P~LIea 358 (364)
.+.|+...++.|++-+.|-..|+.. ..+++++++ |+.+++++|..
T Consensus 540 v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l---~~~~GvsViI~ 600 (1159)
T PRK13030 540 VPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQREL---RETPGVTVLIY 600 (1159)
T ss_pred HHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 3334447889999888764334433 334444444 24578888764
|
|
| >PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.021 Score=65.33 Aligned_cols=115 Identities=16% Similarity=0.083 Sum_probs=79.4
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCCc-ccccccc--cccC
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNGW-AISTNIS--EQFR 310 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg~-ais~~~~--~~~~ 310 (364)
....||.....++|.+.+ ..++.||+.+|||.+ ..|. -+|.-|...+.+++++|.+|.. ++++... ...+
T Consensus 479 ~~~~MG~eg~~~~G~a~f----~~~~hv~a~iGDgTffHSG~--~al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~~ 552 (1165)
T PRK09193 479 TFTQMGGEGVPWIGQAPF----TDEKHVFQNLGDGTYFHSGL--LAIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGLS 552 (1165)
T ss_pred eeeccCCcchhhceeccc----cCCCcEEEEeccccchhcCH--HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCcc
Confidence 346889888999998765 234679999999998 4442 3577777888999888887775 5554322 2235
Q ss_pred CccHHHHHhhcCeEEEEEeCCCHHHH-----------------HHHHHHHHHHhhcCCCcEEEEE
Q 017890 311 SDGIVVKGRAYGIRSIRVDGNDALAV-----------------YTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 311 ~~~ia~~a~a~G~~~~~VDGnD~~av-----------------~~a~~~A~~~ar~~~~P~LIea 358 (364)
..+|....++.|++-+.|-..|+... .+++++++ |+..++++|..
T Consensus 553 ~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~l---r~~~GvsViI~ 614 (1165)
T PRK09193 553 VPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQREL---REIPGVTVLIY 614 (1165)
T ss_pred hhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 57788999999998876643445444 34444444 24678887764
|
|
| >cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.044 Score=48.04 Aligned_cols=105 Identities=18% Similarity=0.119 Sum_probs=65.4
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcC
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G 322 (364)
..+|.|.+.+ +. +++++..|-|..+ ...+|..|...+.|+|+|+-+................+.....+. .
T Consensus 54 ~~~A~g~~r~----~~-~v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~ 124 (160)
T cd07034 54 AEAAIGASAA----GA-RAMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-P 124 (160)
T ss_pred HHHHHHHHhh----CC-cEEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-C
Confidence 3445555543 22 2666777888776 456788888888999999976543211100000000111222222 3
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 323 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 323 ~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
+.+.++. +++++.+.+++|.+.++..++|++|..
T Consensus 125 ~~~~~~~--~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 125 WPVLAPS--SVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred EEEEeCC--CHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 6666665 799999999999999998889998864
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th |
| >cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.077 Score=47.30 Aligned_cols=106 Identities=20% Similarity=0.124 Sum_probs=68.7
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccc--cc-c---CCccHHHH
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS--EQ-F---RSDGIVVK 317 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~--~~-~---~~~~ia~~ 317 (364)
-+|-|.+.+. +-.++++..|=|.++ ..-++..|...+.|+|+|+-+.......... .+ . ..++..+.
T Consensus 49 ~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 121 (162)
T cd07038 49 YAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKM 121 (162)
T ss_pred HHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHH
Confidence 3555665543 233444444666665 4567888888899999999765432111100 00 0 01245567
Q ss_pred HhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 318 GRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 318 a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
++.+.-...+|. +++++.+++++|.+.+..+++|+.|++
T Consensus 122 ~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 122 FEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 777777777886 788899999999988888889999986
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many |
| >PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.042 Score=49.06 Aligned_cols=108 Identities=21% Similarity=0.097 Sum_probs=69.5
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcC
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G 322 (364)
.-+|.|.+++. ++-.++++..|=|.++ ..-++..|...++|+|+|+-.-..........| ...+....++.+.
T Consensus 52 ~~~A~g~ar~~---g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q-~~~d~~~~~~~~~ 124 (172)
T PF02776_consen 52 AFMADGYARAT---GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPSAGEGRGAFQ-QEIDQQSLFRPVT 124 (172)
T ss_dssp HHHHHHHHHHH---SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSGGGTTTTSTT-SSTHHHHHHGGGS
T ss_pred HHHHHHHHHhh---ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccchhhhcccccc-cchhhcchhcccc
Confidence 34566666543 2223344444455554 345677788889999999987765433311111 1235667788888
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHh-hcCCCcEEEEEE
Q 017890 323 IRSIRVDGNDALAVYTAVQAAREMA-ISEKRPVLVEVR 359 (364)
Q Consensus 323 ~~~~~VDGnD~~av~~a~~~A~~~a-r~~~~P~LIea~ 359 (364)
-...+++ +++++.+++++|+..+ ....+|+.|++-
T Consensus 125 k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 125 KWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp SEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred chhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 7788886 6778888888888887 677899999874
|
It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B .... |
| >TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.2 Score=44.72 Aligned_cols=106 Identities=15% Similarity=0.096 Sum_probs=67.6
Q ss_pred ccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHH-HcCCCEEEEEEcCCc-ccccccccccCCccHH-H
Q 017890 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAA-VMEAPVVFICRNNGW-AISTNISEQFRSDGIV-V 316 (364)
Q Consensus 240 G~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa-~~~LPvIfVV~NNg~-ais~~~~~~~~~~~ia-~ 316 (364)
+.+..+|.|..++ .++.++|+.+=|- |..-.+|..|. ..++|+++|+-.-+. +-..+ .|.....+- .
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~---gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~--~q~~~g~~~~~ 113 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGL---GNSINALASLNKTYGIPLPILASWRGVYKEKIP--AQIPMGRATPK 113 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcH---HHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCc--cccchhhhhHH
Confidence 3344555555533 3456788888773 34666788888 889999999955443 11111 111111111 1
Q ss_pred HHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 317 KGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 317 ~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
.....+++...++ +++++ .++.+|++.+.++++|+.|-+
T Consensus 114 ~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~ 152 (157)
T TIGR03845 114 LLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALL 152 (157)
T ss_pred HHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEE
Confidence 2245677788886 68899 999999999988999998854
|
This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.059 Score=62.07 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=69.0
Q ss_pred CeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCC-cccc-------cccc---------cccCCccHHHHHhhc
Q 017890 260 ACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAIS-------TNIS---------EQFRSDGIVVKGRAY 321 (364)
Q Consensus 260 ~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais-------~~~~---------~~~~~~~ia~~a~a~ 321 (364)
..||++.|||.+ ..|- .+|.-+...+.+|.+||-||. |+.+ ||.. .....-|+...+.++
T Consensus 952 ~sv~~~~GDG~~~diG~--~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGY--GGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCc--cchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 469999999955 6663 346677788899987877775 6432 2211 112345788889999
Q ss_pred CeEEE-EEe-CCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 322 GIRSI-RVD-GNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 322 G~~~~-~VD-GnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
|...+ ++- |-++.++.+++++|.+ .+||.+|++.+
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~----~~G~s~i~~~~ 1066 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEA----YDGPSIVIAYS 1066 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 98666 665 6689999999999987 58999999875
|
This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase. |
| >PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.06 Score=61.66 Aligned_cols=114 Identities=17% Similarity=0.073 Sum_probs=74.6
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCCc-cccccc--ccccCC
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNGW-AISTNI--SEQFRS 311 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg~-ais~~~--~~~~~~ 311 (364)
...||.....++|.+-+. .++.+|..+|||.+ ..|. -+|.-|...+.+++++|.+|.. ++++.. ....+.
T Consensus 494 ~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~v 567 (1186)
T PRK13029 494 FSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLTV 567 (1186)
T ss_pred eeccCcchhhheeecccC----CCCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCCH
Confidence 468888888888887652 34579999999998 3442 3577777888999888888875 555432 222333
Q ss_pred ccHHHHHhhcCeEEEEEeCCCHHHH-----------------HHHHHHHHHHhhcCCCcEEEEE
Q 017890 312 DGIVVKGRAYGIRSIRVDGNDALAV-----------------YTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 312 ~~ia~~a~a~G~~~~~VDGnD~~av-----------------~~a~~~A~~~ar~~~~P~LIea 358 (364)
+.|+...++.|++-+.|--.|+... .+++++++ |+..++++|..
T Consensus 568 ~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~l---r~~~GvsViI~ 628 (1186)
T PRK13029 568 PQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQREL---REVPGVSVLIY 628 (1186)
T ss_pred HHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 4455577999998776632234333 33444443 24678887764
|
|
| >cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.25 Score=44.34 Aligned_cols=105 Identities=15% Similarity=0.089 Sum_probs=61.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++..|...+.|+|+|+-+-........ .+...|....++.+--.
T Consensus 50 mAdgyar~---sg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~--~~q~~d~~~l~~~vtk~ 121 (162)
T cd07037 50 FALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRPPELRGTG--ANQTIDQVGLFGDYVRW 121 (162)
T ss_pred HHHHHHHh---hCCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCCHHhcCCC--CCcccchhhhccceeeE
Confidence 45565544 34444555655777665 345677888889999999965433221111 11122344455555445
Q ss_pred EEEEeCCCHHH------HHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALA------VYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~a------v~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|. ++++ +.+.+++|+..++... ||++|++-
T Consensus 122 ~~~v~--~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 122 SVDLP--PPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred EEecC--CcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 55553 3333 6667777777766654 89999863
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim |
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.5 Score=50.28 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=71.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.++++..|=|.++ .--++.-|...++|+|+|+-.-....... ......|..+.++.+--.
T Consensus 58 mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gla~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~~l~~~itk~ 129 (576)
T PRK08611 58 AAAAYAKL---TGKIGVCLSIGGPGAIH---LLNGLYDAKMDHVPVLALAGQVTSDLLGT--DFFQEVNLEKMFEDVAVY 129 (576)
T ss_pred HHHHHHHH---hCCceEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccCHHHHhhcccce
Confidence 45555543 34455666667888886 34567788889999999997654332211 111123556666666655
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..+|+ +++++.+++.+|+..+....||+.|++-
T Consensus 130 ~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP 162 (576)
T PRK08611 130 NHQIM--SAENLPEIVNQAIRTAYEKKGVAVLTIP 162 (576)
T ss_pred eEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 66775 7888999999998888778899999863
|
|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.47 Score=50.12 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=71.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ .--++..|..-++|||+|+-.............+...|....++.+--.
T Consensus 55 mAdgyar~---tg~~gv~~~t~GPG~~N---~~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~ 128 (554)
T TIGR03254 55 AAAAAGFL---TQKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKA 128 (554)
T ss_pred HHHHHHHH---hCCCEEEEEccCccHHh---HHHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhhee
Confidence 45555544 34445677777988887 3356778888999999998654432110001112223556677777777
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+.+.+|++.+..+. ||+.|++-
T Consensus 129 ~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP 162 (554)
T TIGR03254 129 AYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLP 162 (554)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 77887 78899999999988887653 78999863
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.62 Score=49.71 Aligned_cols=105 Identities=17% Similarity=0.151 Sum_probs=67.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++..|...++|||+|+-.-...... ...+...+..+.++.+--.
T Consensus 58 ~Adgyar~---tg~~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~l~~~~tk~ 129 (588)
T PRK07525 58 MADGYTRV---TGRMGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKTIG--QGGFQEAEQMPMFEDMTKY 129 (588)
T ss_pred HHHHHHHH---hCCCEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccCC--CCCCcccchhhhhhhheeE
Confidence 45555443 24445677777888886 3456778888899999998322110000 0011112444566666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..+|+ +++++.+++++|+..|+...||+.|++-
T Consensus 130 ~~~i~--~~~~~~~~i~rA~~~A~~~~GPV~i~iP 162 (588)
T PRK07525 130 QEEVR--DPSRMAEVLNRVFDKAKRESGPAQINIP 162 (588)
T ss_pred EEECC--CHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 66664 7888999999999888888899999874
|
|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.55 Score=50.07 Aligned_cols=104 Identities=21% Similarity=0.217 Sum_probs=74.5
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.| |..++-.++++..|=|+++ .-.+|..|..-+.|+|+|.-.=.... ...+.+...|....++.+=-.
T Consensus 54 mAdgya---r~TGkpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~~~~--~g~~afQe~D~~~l~~p~tk~ 125 (550)
T COG0028 54 AADGYA---RATGKPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVPTSL--IGTDAFQEVDQVGLFRPITKY 125 (550)
T ss_pred HHHHHH---HHcCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCccccc--cCcchhhhcchhhHhhhhhee
Confidence 455554 4456778999999999997 45678888889999999985221111 111112223666677777667
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEV 358 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea 358 (364)
..+|. +++++.+.+++|++.|..++ ||++|++
T Consensus 126 ~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~i 158 (550)
T COG0028 126 NFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDL 158 (550)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 77776 78999999999999998877 8999986
|
|
| >PRK07119 2-ketoisovalerate ferredoxin reductase; Validated | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.52 Score=47.43 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=73.6
Q ss_pred cchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHH--HHH
Q 017890 241 TQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIV--VKG 318 (364)
Q Consensus 241 ~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia--~~a 318 (364)
..+.+|+|+++| +.++++.+-++.+. -.+|.+..|+-..+|+++++-+-. .-++-. -+....|+. .+.
T Consensus 59 aA~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~-~p~~g~-t~~eq~D~~~~~~~ 128 (352)
T PRK07119 59 AAINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG-GPGLGN-IQPSQGDYFQAVKG 128 (352)
T ss_pred HHHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC-CCCCCC-CcchhHHHHHHHhc
Confidence 346788898887 35688888888876 378999999999999988877654 221111 111112221 111
Q ss_pred h---hcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 319 R---AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 319 ~---a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
. -++|.++ +-.|+.+.++.+.+|.+.+.+-+-|+++-..+
T Consensus 129 ~ghgd~~~~vl--~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~ 171 (352)
T PRK07119 129 GGHGDYRLIVL--APSSVQEMVDLTMLAFDLADKYRNPVMVLGDG 171 (352)
T ss_pred CCCCCcceEEE--eCCCHHHHHHHHHHHHHHHHHhCCCEEEEcch
Confidence 1 1345554 55589999999999999998888999886554
|
|
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.97 Score=47.51 Aligned_cols=108 Identities=20% Similarity=0.083 Sum_probs=71.3
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccc-cCCccHHHHHhhcC
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQ-FRSDGIVVKGRAYG 322 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~-~~~~~ia~~a~a~G 322 (364)
-+|-|.|.. .++-.++++..|=|.++ ..-++.-|..-++|||+|+-............. ....|....++.+-
T Consensus 53 ~mAdgyar~---tg~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~t 126 (535)
T PRK07524 53 FMADGYARV---SGKPGVCFIITGPGMTN---IATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVA 126 (535)
T ss_pred HHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhc
Confidence 345555433 34445677777888886 345688888899999999864432111100000 11135667777777
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 323 IRSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 323 ~~~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
-...+|+ +++++.+.+.+|+..|+.. .||+.|++-
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 127 AFSHTLM--SAEDLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 7777776 7889999999999888866 589999864
|
|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.84 Score=48.47 Aligned_cols=107 Identities=16% Similarity=0.158 Sum_probs=69.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.+.+ .++-.++++..|=|.++ .--++..|..-++|||+|+-.-...........+...|....++.+--.
T Consensus 62 mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~ 135 (569)
T PRK09259 62 AAAAAGFL---TQKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKA 135 (569)
T ss_pred HHHHHHHH---hCCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhheee
Confidence 34455443 34445667777888886 3456888888999999998653322100001111223555667766666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|+ +++++.+.+.+|+..|..+ .||+.|++-
T Consensus 136 s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 136 AFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred eEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeC
Confidence 77776 7889999999998888775 479999864
|
|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.91 Score=47.71 Aligned_cols=107 Identities=21% Similarity=0.147 Sum_probs=68.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccc-cCCccHHHHHhhcCe
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQ-FRSDGIVVKGRAYGI 323 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~-~~~~~ia~~a~a~G~ 323 (364)
+|.|.|.+ .++-.++++..|=|.++ .--++.-|..-+.|||+|+-+-.-......... ....+..+.++.+--
T Consensus 56 ~A~gyar~---tg~~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk 129 (544)
T PRK07064 56 MADAHARV---SGGLGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSK 129 (544)
T ss_pred HHHHHHHh---cCCCeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcc
Confidence 45566544 34445677777888887 345677888889999999864221100000000 011255666666655
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
...+|+ +++++.+++++|+..+... .||+.|++-
T Consensus 130 ~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 164 (544)
T PRK07064 130 AAFRVR--SAETALATIREAVRVALTAPTGPVSVEIP 164 (544)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeC
Confidence 677775 6888888888888887776 699999874
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.85 Score=48.50 Aligned_cols=105 Identities=17% Similarity=0.135 Sum_probs=67.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.. .++-.++++..|=|.++ .--++..|..-+.|||+|.-.-...... ...+...+....++.+--.
T Consensus 54 ~Adgyar~---tg~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~~~~--~~~~Q~~d~~~l~~~vtk~ 125 (579)
T TIGR03457 54 MADGFARV---TGRMSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTKTIG--LGGFQEADQLPMFQEFTKY 125 (579)
T ss_pred HHHHHHHH---hCCCEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCccccCC--CCCCcccchhhhhhcceeE
Confidence 45555433 34455666777888886 3456778888899999997322111000 1111112455566666556
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..+|. +++++.+.+++|+..|..+.||+.|++-
T Consensus 126 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 158 (579)
T TIGR03457 126 QGHVR--HPSRMAEVLNRCFERAWREMGPAQLNIP 158 (579)
T ss_pred EEecC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 66674 7888999999998888888899999874
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.74 Score=46.77 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=71.4
Q ss_pred cchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcc-cccccccccCCccH-HHHH
Q 017890 241 TQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA-ISTNISEQFRSDGI-VVKG 318 (364)
Q Consensus 241 ~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a-is~~~~~~~~~~~i-a~~a 318 (364)
..+.+|+|+++| +.++++.+-=++++ -.+|.+-+|+-.++|+|+++-+..-. ...|+. ....|+ ..+.
T Consensus 59 aA~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~--~~q~D~~~~~~ 128 (376)
T PRK08659 59 ASMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGGPSTGQPTK--PAQGDMMQARW 128 (376)
T ss_pred HHHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCC--cCcHHHHHHhc
Confidence 346788898887 33566655444444 35788999999999998888776431 111221 111222 2333
Q ss_pred hhcC-eEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 319 RAYG-IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 319 ~a~G-~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.++| .+.+.+.-.|+.+.++.+..|.+.+.+.+-|++|-..+
T Consensus 129 ~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~ 171 (376)
T PRK08659 129 GTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADE 171 (376)
T ss_pred ccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEech
Confidence 3333 23244456689999999999999998888999886654
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.89 Score=48.19 Aligned_cols=105 Identities=17% Similarity=0.146 Sum_probs=69.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.. .+.-.++++..|=|.++ .--++..|..-+.|||+|.-.-....... ..+...|....++.+--.
T Consensus 58 ~Adgyar~---tg~~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~i~~~~tk~ 129 (572)
T PRK06456 58 AADGYARA---SGVPGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVMGK--MAFQEADAMGVFENVTKY 129 (572)
T ss_pred HHHHHHHh---hCCCEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCccccCC--CCccccchhhhhhcccee
Confidence 45555543 33444555567888886 34567788888999999986443221111 111122455666666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+++.+|++.|+.+. ||+.|++-
T Consensus 130 ~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 163 (572)
T PRK06456 130 VIGIK--RIDEIPQWIKNAFYIATTGRPGPVVIDIP 163 (572)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 77775 78899999999998888765 89999864
|
|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.95 Score=48.25 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=69.5
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
-+|.|.|.+ .++-.++++..|=|.++ .--++.-|..-++|||+|+-.-..... ........|....++.+--
T Consensus 52 ~~Adgyar~---tg~~gv~~~t~GPG~~n---~l~~i~~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~~tk 123 (586)
T PRK06276 52 HAADGYARA---SGKVGVCVATSGPGATN---LVTGIATAYADSSPVIALTGQVPTKLI--GNDAFQEIDALGIFMPITK 123 (586)
T ss_pred HHHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCCcccc--CCCCCccccHhhHHhhhcc
Confidence 345555543 34455667777888886 345677888889999999843222111 0111112345566776666
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
...+|+ +++++..++.+|++.|.... ||+.|++-
T Consensus 124 ~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 158 (586)
T PRK06276 124 HNFQIK--KPEEIPEIFRAAFEIAKTGRPGPVHIDLP 158 (586)
T ss_pred eEEecC--CHHHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 677775 78889999999998887764 89999874
|
|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.1 Score=47.48 Aligned_cols=105 Identities=14% Similarity=0.078 Sum_probs=68.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.++++..|=|.++ ..-++..|..-+.|+|+|+-.-...... .......+..+.++.+--.
T Consensus 54 mAdgyar~---tgkpgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vtk~ 125 (549)
T PRK06457 54 AASVEAKI---TGKPSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVESDMIG--HDYFQEVNLTKLFDDVAVF 125 (549)
T ss_pred HHHHHHHH---hCCCeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCccccC--CCcccccchhhhhccceeE
Confidence 45555543 34455666667888886 4466888888899999998653321111 1111122445555555445
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..+|. +++++.+++++|+..|....||+.|++-
T Consensus 126 ~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP 158 (549)
T PRK06457 126 NQILI--NPENAEYIIRRAIREAISKRGVAHINLP 158 (549)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 55665 6788888899998888777899999874
|
|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.86 Score=48.41 Aligned_cols=105 Identities=19% Similarity=0.209 Sum_probs=71.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ .--++..|...++|||+|+-.-...... ...+...|....++.+--.
T Consensus 57 mAdgYar~---tg~~gv~~~t~GPG~~n---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~~tk~ 128 (574)
T PRK07979 57 MADGLARA---TGEVGVVLVTSGPGATN---AITGIATAYMDSIPLVVLSGQVATSLIG--YDAFQECDMVGISRPVVKH 128 (574)
T ss_pred HHHHHHHH---hCCceEEEECCCccHhh---hHHHHHHHhhcCCCEEEEECCCChhccC--CCCCceecHHHHhhcccce
Confidence 45555543 34556777778988886 3456778888899999998654322111 1112223556667766666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|. +++++..++++|+..|..+. ||+.|++-
T Consensus 129 ~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~iP 162 (574)
T PRK07979 129 SFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDLP 162 (574)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence 77775 78999999999998888775 89999863
|
|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.98 E-value=1.1 Score=48.21 Aligned_cols=105 Identities=22% Similarity=0.212 Sum_probs=69.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|. ..++-.++++..|=|.++ ..-++.-|..-+.|||+|+-+-..... ....+...|....++.+--.
T Consensus 75 aA~gyar---~tgk~gv~~~t~GPG~~n---~l~gl~~A~~d~~Pvl~i~G~~~~~~~--~~~~~Qe~d~~~~~~~vtk~ 146 (616)
T PRK07418 75 AADGYAR---ATGKVGVCFGTSGPGATN---LVTGIATAQMDSVPMVVITGQVPRPAI--GTDAFQETDIFGITLPIVKH 146 (616)
T ss_pred HHHHHHH---HhCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCcccc--CCCCcccccHHHHhhhccee
Confidence 4555543 334555667777888886 345677888889999999864322110 01111223555666666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++..++.+|++.|.... ||+.|++-
T Consensus 147 ~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP 180 (616)
T PRK07418 147 SYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIP 180 (616)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecc
Confidence 66776 78899999999998888776 99999864
|
|
| >cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.85 Score=40.24 Aligned_cols=100 Identities=19% Similarity=0.167 Sum_probs=60.0
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHH-HHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALN-FAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGR 319 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn-~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~ 319 (364)
+++|.|+|+. + .++++..+ ..+.. ..++.+. .++.+++|+++++...++.. ..+++.. .++++-...
T Consensus 52 vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~--~~~~a~~~~ 121 (156)
T cd07033 52 VGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQG--IEDIALLRA 121 (156)
T ss_pred HHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccch--HHHHHHhcC
Confidence 4556666642 3 34455554 44433 3455565 88899999999998776643 4444322 223322221
Q ss_pred hcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 320 a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
--|+.++. --|+.+++..++.|++ .++|++|-.
T Consensus 122 iPg~~v~~--Ps~~~~~~~ll~~a~~----~~~P~~irl 154 (156)
T cd07033 122 IPNMTVLR--PADANETAAALEAALE----YDGPVYIRL 154 (156)
T ss_pred CCCCEEEe--cCCHHHHHHHHHHHHh----CCCCEEEEe
Confidence 12565554 3478899999998886 467998753
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included |
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.2 Score=46.85 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=68.6
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccC-CccHHHHHhhcCe
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGI 323 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~-~~~ia~~a~a~G~ 323 (364)
+|.|.|.. .++-.++++..|=|.++ ..-++.-|..-+.|+|+|+-.-..........+.. ..+....++.+--
T Consensus 58 ~A~gyar~---tg~~~v~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk 131 (542)
T PRK08266 58 MAFGYARS---TGRPGVCSVVPGPGVLN---AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTK 131 (542)
T ss_pred HHHHHHHH---hCCCeEEEECCCCcHHH---HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhcc
Confidence 55565544 23344566667888886 34567788889999999985322111000001111 1356667777766
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
...+|+ +++++.+.+++|+..|..+ .||+.|++-
T Consensus 132 ~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP 166 (542)
T PRK08266 132 WAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMP 166 (542)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeC
Confidence 677776 6888888888888877764 589999874
|
|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=92.65 E-value=1.1 Score=47.63 Aligned_cols=105 Identities=22% Similarity=0.145 Sum_probs=68.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .+.-.++++..|=|.++ ..-++.-|...++|||+|+-.-...... .......|....++.+--.
T Consensus 64 ~Adgyar~---tg~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~Q~~d~~~l~~~vtk~ 135 (578)
T PRK06112 64 MADGYARV---SGKVAVVTAQNGPAATL---LVAPLAEALKASVPIVALVQDVNRDQTD--RNAFQELDHIALFQSCTKW 135 (578)
T ss_pred HHHHHHHH---hCCCEEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCCccccChhhhhccccce
Confidence 45555543 34455666677888776 3466778888999999998542221111 1111123555667777666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+.+.+|+..|+.+. ||+.|++-
T Consensus 136 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (578)
T PRK06112 136 VRRVT--VAERIDDYVDQAFTAATSGRPGPVVLLLP 169 (578)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 77775 68888888999988887764 89999864
|
|
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.57 Score=47.40 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=70.6
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcccc-ccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCcc
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE-GDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDG 313 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~e-G~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ 313 (364)
..=|.++++|.|+.+|- +++.++++=-.++.. =..-.+|+-...+++|++++|-.-|.-- ..|.+.. .+.-
T Consensus 33 ~~E~~av~iaaG~~lat-----G~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~-~G~~ 106 (361)
T TIGR03297 33 ANEGAAVGLAAGAYLAT-----GKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVK-QGRI 106 (361)
T ss_pred CCchHHHHHHHHHHHhc-----CCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhH-HhHH
Confidence 44677788888888872 234445542222221 0111122224668999999998777521 1122111 1233
Q ss_pred HHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 314 IVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 314 ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
..+..+++|++...++ .|.++..+++.+|.+++.+.++|+.|-+
T Consensus 107 t~~lL~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~ 150 (361)
T TIGR03297 107 TLSLLDALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVV 150 (361)
T ss_pred HHHHHHHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4567889999999995 3566788888888888888899987644
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=92.60 E-value=1 Score=48.00 Aligned_cols=105 Identities=25% Similarity=0.254 Sum_probs=70.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++.-|..-+.|||+|.-.-..... ....+...|....++.+--.
T Consensus 66 ~Adgyar~---tg~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~~tk~ 137 (585)
T PLN02470 66 AAEGYAKA---SGKVGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMI--GTDAFQETPIVEVTRSITKH 137 (585)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhc--CCCcCcccchhhhhhhheEE
Confidence 45565544 34445677777888886 345677788889999999854332111 01111223445566666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+++++|+..|+.+. ||+.|++-
T Consensus 138 ~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 171 (585)
T PLN02470 138 NYLVM--DVEDIPRVIREAFFLASSGRPGPVLVDIP 171 (585)
T ss_pred EEEcC--CHHHHHHHHHHHHHHhcCCCCCeEEEEec
Confidence 67775 78999999999998888775 89999874
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=92.56 E-value=1.6 Score=46.74 Aligned_cols=94 Identities=21% Similarity=0.276 Sum_probs=64.3
Q ss_pred CCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHH
Q 017890 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYT 338 (364)
Q Consensus 259 ~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~ 338 (364)
-.++++..|=|.++ .--++.-|...++|||+|+-.-....... ..+...|....++.+--...+|. +++++.+
T Consensus 68 ~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~D~~~~~~~vtk~~~~v~--~~~~i~~ 140 (588)
T TIGR01504 68 IGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIAAIAKPVSKMAVTVR--EAALVPR 140 (588)
T ss_pred eEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccCHHHHhhhhceEEEEcC--CHHHHHH
Confidence 34555556888776 34567788888999999985444322111 11222356667777766677775 7889999
Q ss_pred HHHHHHHHhhcCC-CcEEEEEE
Q 017890 339 AVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 339 a~~~A~~~ar~~~-~P~LIea~ 359 (364)
++++|+..|+.+. ||+.|++-
T Consensus 141 ~i~~A~~~A~~~~~GPV~l~iP 162 (588)
T TIGR01504 141 VLQQAFHLMRSGRPGPVLIDLP 162 (588)
T ss_pred HHHHHHHHHccCCCCeEEEEeC
Confidence 9999998887764 79999874
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.96 Score=48.40 Aligned_cols=105 Identities=18% Similarity=0.070 Sum_probs=66.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcC-e
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG-I 323 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G-~ 323 (364)
+|-|.|.+ .++-.++++..|=|+++ .--++.-|..-++|||+|+-.=...... .......+..+.++.+- -
T Consensus 57 ~Adgyar~---tg~~gv~~~t~GPG~~n---~~~gi~~A~~d~vPvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~vt~k 128 (597)
T PRK08273 57 MAVAHAKF---TGEVGVCLATSGPGAIH---LLNGLYDAKLDHVPVVAIVGQQARAALG--GHYQQEVDLQSLFKDVAGA 128 (597)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCchhhcC--CCCCCccCHHHHHHHHHHH
Confidence 45555543 34445666677888887 3456777888899999998532211110 11111224445555554 3
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
...+|+ +++++.+.+++|+..|....+|+.|++-
T Consensus 129 ~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP 162 (597)
T PRK08273 129 FVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILP 162 (597)
T ss_pred HeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 455665 6888888888888888888899999864
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=92.50 E-value=1.2 Score=47.19 Aligned_cols=105 Identities=21% Similarity=0.252 Sum_probs=69.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.. .++-.++++..|=|.++ .--++.-|..-++|||+|+-.-...... .......|....++.+--.
T Consensus 54 ~Adgyar~---tg~~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 125 (558)
T TIGR00118 54 AADGYARA---SGKVGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLIG--SDAFQEADILGITMPITKH 125 (558)
T ss_pred HHHHHHHH---hCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCccccC--CCCCcccChhhhhcCccce
Confidence 45555543 34455677777888886 4466788888999999998643221111 1111122455666777667
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+.+.+|++.+.... ||+.|++-
T Consensus 126 ~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP 159 (558)
T TIGR00118 126 SFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLP 159 (558)
T ss_pred eEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Confidence 77785 68889999999998887764 89999874
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=92.48 E-value=1.1 Score=47.51 Aligned_cols=105 Identities=21% Similarity=0.242 Sum_probs=70.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ .--++..|..-+.|||+|+-.-....... ..+...|....++.+--.
T Consensus 57 mAdgyar~---tg~~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~itk~ 128 (574)
T PRK06466 57 MADGYARA---TGKTGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLIGE--DAFQETDMVGISRPIVKH 128 (574)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCC--Ccccccchhhhhhcccee
Confidence 45555543 34456677777888886 34567788888999999986544322111 112223555666666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++..++++|+..|..+. ||+.|++-
T Consensus 129 s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP 162 (574)
T PRK06466 129 SFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIP 162 (574)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 77776 78899999999998888774 89999863
|
|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=92.48 E-value=1.3 Score=46.63 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=68.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.++++..|=|.++ ..-++.-|..-++|+|+|+-+-...... .+.....|....++.+--.
T Consensus 53 ~A~gyar~---tg~~gv~~~t~GpG~~N---~~~~i~~A~~~~~Pll~i~g~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 124 (547)
T PRK08322 53 MAATYGRL---TGKAGVCLSTLGPGATN---LVTGVAYAQLGGMPMVAITGQKPIKRSK--QGSFQIVDVVAMMAPLTKW 124 (547)
T ss_pred HHHHHHHh---hCCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEeccccccccC--CCccccccHHHHhhhheeE
Confidence 45555544 34445666666888886 3456778888899999998543321111 1112223555666666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+.+.+|+..|.... ||+.|++-
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 158 (547)
T PRK08322 125 TRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELP 158 (547)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence 66775 78899999999998887764 89999863
|
|
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.46 E-value=1 Score=47.03 Aligned_cols=105 Identities=20% Similarity=0.078 Sum_probs=68.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.. .++-.++++..|=|.++ ...++..|..-+.|||+|+-.-...... .......|....++.+--.
T Consensus 54 mAdgyar~---tg~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~vtk~ 125 (514)
T PRK07586 54 AADGYARM---AGKPAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHRK--YDAPLTSDIEALARPVSGW 125 (514)
T ss_pred HHHHHHHH---HCCCEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhccC--CCcccccchhhhhccccce
Confidence 45555543 34445666777888775 3455667888899999998653321111 1111123555666666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|. +++++.+.+++|+..|+.+ .||+.|++-
T Consensus 126 ~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 159 (514)
T PRK07586 126 VRRSE--SAADVAADAAAAVAAARGAPGQVATLILP 159 (514)
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 66665 7888999999999888876 589999874
|
|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.1 Score=47.68 Aligned_cols=105 Identities=24% Similarity=0.245 Sum_probs=70.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.. .++-.++++..|=|.++ .--++.-|...+.|||+|+-.-...... .+.....|....++.+--.
T Consensus 67 mAdgyar~---tg~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~itk~ 138 (570)
T PRK06725 67 AAEGYARA---SGKVGVVFATSGPGATN---LVTGLADAYMDSIPLVVITGQVATPLIG--KDGFQEADVVGITVPVTKH 138 (570)
T ss_pred HHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCcCEEEEecCCCccccc--CCCCcccchhhhhhcccee
Confidence 45555543 34445677777888876 3456777888899999998543322111 1112223566677777666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+.+++|+..|+... ||+.|++-
T Consensus 139 ~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 172 (570)
T PRK06725 139 NYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIP 172 (570)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEccc
Confidence 77775 78899999999998888775 89999864
|
|
| >PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.38 Score=45.69 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=64.9
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccc-cccccccCCccHHHHHhhc
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAIS-TNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais-~~~~~~~~~~~ia~~a~a~ 321 (364)
+.+++|++++- .++++.+-=.+++ -..|.|..|+..++|+++++-|-.-... .++.. ...|+. .++-+
T Consensus 49 ~~~~~GAs~aG------~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~--~q~D~~-~~~d~ 117 (230)
T PF01855_consen 49 MEAAIGASAAG------ARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQP--EQDDLM-AARDS 117 (230)
T ss_dssp HHHHHHHHHTT--------EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB--SB---SHHHH-HTTTS
T ss_pred HHHHHHHHhcC------CceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcC--ChhHHH-HHHhc
Confidence 56778887762 3444444333333 2457788999999999888877543222 12111 111221 23367
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
||.++... |+.+.++.+..|.+.+.+-..|+++-..+++.
T Consensus 118 ~~~vl~p~--~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~ 157 (230)
T PF01855_consen 118 GWIVLAPS--SPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC 157 (230)
T ss_dssp S-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC
T ss_pred CeEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEechhhh
Confidence 88877654 89999999999999999999999998776654
|
This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B .... |
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=1.4 Score=47.08 Aligned_cols=105 Identities=20% Similarity=0.235 Sum_probs=68.8
Q ss_pred HHHHHHHHhhhc-cCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 245 QAVGVAYSLKME-KKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 245 ~AvG~A~A~k~~-~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
+|.|.|.+ . ++-.++++..|=|.++ .--++.-|..-+.|||+|+-.-....... ..+...|....++.+--
T Consensus 57 mAdGYar~---t~g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~~~l~~~itk 128 (591)
T PRK11269 57 MAEGYTRA---TAGNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIESIAKPVTK 128 (591)
T ss_pred HHHHHHHH---cCCCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccChhhHhhccee
Confidence 45555443 3 3444566666888876 33567778888999999986544322111 11222345566666655
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
...+|. +++++..++++|++.|+.+. ||+.|++-
T Consensus 129 ~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 163 (591)
T PRK11269 129 WAVTVR--EPALVPRVFQQAFHLMRSGRPGPVLIDLP 163 (591)
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 666674 78899999999998887764 89999874
|
|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.3 Score=47.53 Aligned_cols=105 Identities=24% Similarity=0.281 Sum_probs=69.5
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.++++..|=|.++ ..-++.-|..-++|+|+|+-.-...... ...+...|....++.+--.
T Consensus 84 ~Adgyar~---tg~~gv~~~t~GPG~~N---~l~gl~~A~~~~~PllvI~G~~~~~~~~--~~~~q~~d~~~l~~~~tk~ 155 (612)
T PRK07789 84 AAEGYAQA---TGRVGVCMATSGPGATN---LVTPIADANMDSVPVVAITGQVGRGLIG--TDAFQEADIVGITMPITKH 155 (612)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcCcccchhhhhhcceeE
Confidence 45555443 34455666777888886 3456777888899999998643321111 1112223555666666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|+ +++++.+.+.+|+..++.+ .||+.|++-
T Consensus 156 s~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP 189 (612)
T PRK07789 156 NFLVT--DADDIPRVIAEAFHIASTGRPGPVLVDIP 189 (612)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEEc
Confidence 66775 7899999999999888876 489999874
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.26 E-value=1.1 Score=47.26 Aligned_cols=105 Identities=25% Similarity=0.266 Sum_probs=68.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.++++..|=|.++ ..-++.-|..-++|||+|+-.-....... ......|....++.+--.
T Consensus 53 ~Adgyar~---sg~~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~tk~ 124 (548)
T PRK08978 53 AAIGYARA---TGKVGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIGT--DAFQEIDVLGLSLACTKH 124 (548)
T ss_pred HHHHHHHH---hCCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccchhccccCceee
Confidence 45555544 34455667777888886 44667788888999999986433211111 111112444555555555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++...+++|++.|+... ||+.|++-
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 158 (548)
T PRK08978 125 SFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIP 158 (548)
T ss_pred EEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 66775 78899999999998887764 89999864
|
|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=92.07 E-value=1.4 Score=46.62 Aligned_cols=105 Identities=15% Similarity=0.136 Sum_probs=66.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.++++..|=|.++ ..-++.-|-.-+.|||+|.-.-...... .......|....++.+=-.
T Consensus 61 ~Adgyar~---tg~~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~l~~~~tk~ 132 (557)
T PRK08199 61 MAEAYGKL---TGRPGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQVARDFRE--REAFQEIDYRRMFGPMAKW 132 (557)
T ss_pred HHHHHHHh---cCCCEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCcccccCHHHhhhhhhce
Confidence 45555543 34445666777888886 4456778888899999998543221111 1111112444555555444
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+| ++++++.+.+.+|+..|..+. ||+.|++-
T Consensus 133 ~~~v--~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 133 VAEI--DDAARIPELVSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred eeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 5566 478899999999998887774 89999863
|
|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=91.92 E-value=1.4 Score=46.76 Aligned_cols=106 Identities=20% Similarity=0.241 Sum_probs=67.8
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
-+|.|.|.+. ++-.++++..|=|.++ .--++.-|..-+.|||+|.-.-....... ......|....++.+--
T Consensus 67 ~~A~gyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~~l~~~~tk 138 (571)
T PRK07710 67 HAAEGYARIS---GKPGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIGS--DAFQEADIMGITMPVTK 138 (571)
T ss_pred HHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccCC--CCccccchhhhhhcccc
Confidence 3455655442 3445666667888776 34567778888999999986544321111 11112245555555544
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
...+|. +++++.+.+++|+..++.+. ||+.|++-
T Consensus 139 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 173 (571)
T PRK07710 139 HNYQVR--KASDLPRIIKEAFHIATTGRPGPVLIDIP 173 (571)
T ss_pred eEEecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 555664 78888899999998887764 89999874
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.4 Score=47.21 Aligned_cols=105 Identities=23% Similarity=0.230 Sum_probs=69.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.. .++-.++++..|=|.++ ..-++.-|...+.|||+|.-.-....... ..+...|....++.+--.
T Consensus 64 mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~vtk~ 135 (595)
T PRK09107 64 AAEGYARS---TGKPGVVLVTSGPGATN---AVTPLQDALMDSIPLVCITGQVPTHLIGS--DAFQECDTVGITRPCTKH 135 (595)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEEcCCChhhcCC--CCCcccchhhhhhhheEE
Confidence 45555443 34456677777888886 34567788888999999986544321111 111123455566666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+.+.+|++.|+.+. ||+.|++-
T Consensus 136 ~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 169 (595)
T PRK09107 136 NWLVK--DVNDLARVIHEAFHVATSGRPGPVVVDIP 169 (595)
T ss_pred EEEeC--CHHHHHHHHHHHHHHhcCCCCceEEEecC
Confidence 66775 78999999999999888874 89999863
|
|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=91.86 E-value=1.5 Score=46.46 Aligned_cols=105 Identities=21% Similarity=0.218 Sum_probs=66.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+. +.-.++++..|=|.++ ..-++.-|...+.|||+|.-.-....... ..+...|....++.+--.
T Consensus 66 ~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~~tk~ 137 (564)
T PRK08155 66 IAQGMARTT---GKPAVCMACSGPGATN---LVTAIADARLDSIPLVCITGQVPASMIGT--DAFQEVDTYGISIPITKH 137 (564)
T ss_pred HHHHHHHHc---CCCeEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeccCCcccccC--CCccccchhhhhhccceE
Confidence 466665542 3334555566888876 34567778889999999985433221111 111112444555555555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++...+.+|++.|+... ||+.|++-
T Consensus 138 ~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP 171 (564)
T PRK08155 138 NYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIP 171 (564)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 66665 78899999999998887774 89999873
|
|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=1.6 Score=45.86 Aligned_cols=105 Identities=21% Similarity=0.058 Sum_probs=67.5
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++..|..-+.|||+|+-......... ......|....++.+--.
T Consensus 58 mAdgYaR~---tg~~gv~~~t~GpG~~N---~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~vtk~ 129 (518)
T PRK12474 58 AADGYGRI---AGKPAVTLLHLGPGLAN---GLANLHNARRAASPIVNIVGDHAVEHLQY--DAPLTSDIDGFARPVSRW 129 (518)
T ss_pred HHHHHHHH---hCCCEEEEEccchhHhH---hHHHHHHHhhcCCCEEEEeccCchhhcCC--CCccccCHHHhhhcccce
Confidence 45555443 35556677777888775 34556678888999999986433211111 111113555666665555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+++++|+..|..+. +|+.|++-
T Consensus 130 ~~~v~--~~~~~~~~i~rA~~~A~~~~~GPV~l~iP 163 (518)
T PRK12474 130 VHRSA--SAGAVDSDVARAVQAAQSAPGGIATLIMP 163 (518)
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 55664 78899999999998877765 89999864
|
|
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=91.77 E-value=1.8 Score=46.06 Aligned_cols=105 Identities=14% Similarity=0.047 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|. ..++-.++++..|=|.++ ..-++.-|...++|||+|+-.-...... .......+....++.+--.
T Consensus 53 ~Adgyar---~tgk~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~id~~~~~~~vtk~ 124 (575)
T TIGR02720 53 AAAADAK---LTGKIGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGMN--MDTFQEMNENPIYADVAVY 124 (575)
T ss_pred HHHHHHH---hhCCceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCCcceechhhhhhhcceE
Confidence 3445443 345556777777888886 4466778888899999998654321111 1111112344455555555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..+|. +++.+.+.+.+|+..|....||+.|++-
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 157 (575)
T TIGR02720 125 NRTAM--TAESLPHVIDEAIRRAYAHNGVAVVTIP 157 (575)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 55664 5777777788887777777899999874
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=91.50 E-value=1.9 Score=45.40 Aligned_cols=105 Identities=25% Similarity=0.130 Sum_probs=66.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|. ..++-.++++..|=|.++ ..-++.-|...+.|+|+|+-.-...... ...+...+....++.+--.
T Consensus 51 ~Adgyar---~tg~~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 122 (539)
T TIGR02418 51 MAQAVGR---ITGKPGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSMDNVALFRPITKY 122 (539)
T ss_pred HHHHHHH---HhCCceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCcccccc--cCcccccchhhhhhcceee
Confidence 4445443 334445677777888876 3456777888899999998643321111 1111223445556665445
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+++ +++++.+.+.+|++.+.... ||+.|++-
T Consensus 123 ~~~i~--~~~~~~~~~~~A~~~a~~~~~GPV~l~iP 156 (539)
T TIGR02418 123 SAEVQ--DPDALSEVVANAFRAAESGKPGAAFVSLP 156 (539)
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 55664 78889888999988877664 79999863
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=91.45 E-value=1.7 Score=46.14 Aligned_cols=105 Identities=19% Similarity=0.220 Sum_probs=68.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ .--++.-|...++|||+|.-.-...... ...+...|....++.+--.
T Consensus 57 mAdgyar~---tg~~gv~~~t~GpG~~n---~l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~itk~ 128 (572)
T PRK08979 57 MADGYARA---TGKVGVVLVTSGPGATN---TITGIATAYMDSIPMVVLSGQVPSNLIG--NDAFQECDMIGISRPVVKH 128 (572)
T ss_pred HHHHHHHH---hCCCeEEEECCCchHhH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCCcccchhHHhhhceeE
Confidence 45555543 34445666667888876 3355777888899999998543321111 1112223555666666556
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+.+++|+..|+.+. ||+.|++-
T Consensus 129 ~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (572)
T PRK08979 129 SFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLP 162 (572)
T ss_pred EEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecC
Confidence 77776 78899999999998887765 89999863
|
|
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=91.37 E-value=1.4 Score=46.46 Aligned_cols=107 Identities=21% Similarity=0.119 Sum_probs=64.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccccccc---ccccC-CccHHHHHhh
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI---SEQFR-SDGIVVKGRA 320 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~---~~~~~-~~~ia~~a~a 320 (364)
+|-|.|.+ .++-.++++..|=|.++ .--++.-|..-++|||+|.-.-........ +.+.. .++..+.++.
T Consensus 53 ~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (535)
T TIGR03394 53 AADAAARY---RGTLGVAAVTYGAGAFN---MVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKE 126 (535)
T ss_pred HHhHHHHh---hCCceEEEEecchHHHh---hhhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhh
Confidence 35555543 34456777777888887 335677888889999999854332111100 00110 1123455555
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
.--...+|. +++.+.+++++|+..|....+|+.|++-
T Consensus 127 vtk~~~~v~--~~~~~~~~~~~A~~~a~~~~gPv~i~iP 163 (535)
T TIGR03394 127 VTCDQAVLD--DPATAPAEIARVLGSARELSRPVYLEIP 163 (535)
T ss_pred heEEEEEeC--ChHHhHHHHHHHHHHHHHCCCCEEEEec
Confidence 544455664 5667777777777766667789999874
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=91.30 E-value=2.2 Score=45.62 Aligned_cols=105 Identities=23% Similarity=0.191 Sum_probs=67.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++.-|...++|||+|.-.-...... ...+...|....++.+--.
T Consensus 74 ~AdgYar~---tg~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~itk~ 145 (587)
T PRK06965 74 AADGYARA---TGKVGVALVTSGPGVTN---AVTGIATAYMDSIPMVVISGQVPTAAIG--QDAFQECDTVGITRPIVKH 145 (587)
T ss_pred HHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCcccccHHHHhcCCcce
Confidence 45565544 34445666666877776 3456777888899999997432211100 1111123455566666556
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|. +++++.+.+.+|+..|+.+ .||+.|++-
T Consensus 146 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 179 (587)
T PRK06965 146 NFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIP 179 (587)
T ss_pred eEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 66776 7888888999999888876 489999863
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=91.02 E-value=2.1 Score=45.43 Aligned_cols=105 Identities=20% Similarity=0.250 Sum_probs=67.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ .--++.-|...+.|||+|.-.-....... ......|....++.+--.
T Consensus 57 mAdgyar~---tg~~gv~~~t~GpG~~N---~l~~i~~A~~~~~Pvlvi~G~~~~~~~~~--~~~q~~d~~~l~~~vtk~ 128 (574)
T PRK06882 57 MADGYARS---TGKVGCVLVTSGPGATN---AITGIATAYTDSVPLVILSGQVPSNLIGT--DAFQECDMLGISRPVVKH 128 (574)
T ss_pred HHHHHHHh---hCCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--Ccccccchhhhhhcccce
Confidence 45555443 34445666667888876 33567778888999999985443221111 111123455666666556
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|. +++++...+.+|+..|... .||+.|++-
T Consensus 129 s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (574)
T PRK06882 129 SFIVK--NAEDIPSTIKKAFYIASTGRPGPVVIDIP 162 (574)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCCCEEEecC
Confidence 66775 7888888888888877765 489999864
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=91.00 E-value=1.8 Score=45.92 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=68.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.. .++-.++++..|=|.++ .--++.-|..-++|||+|.-.-...-.. ...+...+....++.+--.
T Consensus 63 ~Adgyar~---tg~~gv~~~t~GPG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~itk~ 134 (566)
T PRK07282 63 EAEGYAKS---TGKLGVAVVTSGPGATN---AITGIADAMSDSVPLLVFTGQVARAGIG--KDAFQEADIVGITMPITKY 134 (566)
T ss_pred HHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecccccccCC--CCCccccChhchhcCCCce
Confidence 45555443 34456677777888886 3456777888899999998653321111 1111112444556666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+++.+|++.++.+. ||+.|++-
T Consensus 135 s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 168 (566)
T PRK07282 135 NYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLP 168 (566)
T ss_pred eEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCC
Confidence 66775 78889999999998888764 89999863
|
|
| >PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=90.96 E-value=2.4 Score=43.38 Aligned_cols=109 Identities=22% Similarity=0.224 Sum_probs=72.0
Q ss_pred chhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
.+.+|+|+++| +.++++.+-=++++ -.+|.|.+|+-.++|+|+++.|-.-. ++..-.....|+. ..+--
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~-~~~d~ 129 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSL-AQRDT 129 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHH-HHhhc
Confidence 46788899887 34566665555554 36899999999999988877655432 2222111112222 12223
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
||-++- ..|+.+.++.+..|.+.+.+-.-|++|-..++++
T Consensus 130 g~i~~~--~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~ 169 (390)
T PRK08366 130 GWMQFY--AENNQEVYDGVLMAFKVAETVNLPAMVVESAFIL 169 (390)
T ss_pred CEEEEe--CCCHHHHHHHHHHHHHHHHHHCCCEEEEecCccc
Confidence 663333 3589999999999999998889999987766653
|
|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=90.87 E-value=2.2 Score=45.11 Aligned_cols=105 Identities=20% Similarity=0.131 Sum_probs=67.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|. ..++-.++++..|=|.++ .--++.-|..-+.|||+|.-......... ......|....++.+--.
T Consensus 57 ~A~gyar---~tg~~gv~~vt~GpG~~N---~l~gl~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d~~~l~~~~tk~ 128 (552)
T PRK08617 57 MAAAIGR---LTGKPGVVLVTSGPGVSN---LATGLVTATAEGDPVVAIGGQVKRADRLK--RTHQSMDNVALFRPITKY 128 (552)
T ss_pred HHHhHhh---hcCCCEEEEECCCCcHhH---hHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccchhhhhhhhcce
Confidence 3444443 334445666666888886 34567778888999999985332211111 111122445566666556
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++..++.+|++.+..+. ||+.|++-
T Consensus 129 ~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 162 (552)
T PRK08617 129 SAEVQ--DPDNLSEVLANAFRAAESGRPGAAFVSLP 162 (552)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEeCh
Confidence 67775 78899999999998887764 79999864
|
|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.57 E-value=2.3 Score=45.02 Aligned_cols=106 Identities=21% Similarity=0.236 Sum_probs=67.6
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
-+|-|.|.+ .++-.++++..|=|.++ .--++.-|..-+.|||+|.-.-...... .......|....++.+--
T Consensus 59 ~~Adgyar~---tg~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~itk 130 (561)
T PRK06048 59 HAADGYARA---TGKVGVCVATSGPGATN---LVTGIATAYMDSVPIVALTGQVPRSMIG--NDAFQEADITGITMPITK 130 (561)
T ss_pred HHHHHHHHH---hCCCeEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEeccCCccccC--CCCccccchhhhccCcce
Confidence 345555543 34455677777888886 3456778888899999997432211110 111112345555555555
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
...+|. +++++.+++++|++.++.. .||+.|++-
T Consensus 131 ~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 131 HNYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEecC
Confidence 566675 7888999999998888776 489999874
|
|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=2.5 Score=44.59 Aligned_cols=105 Identities=20% Similarity=0.056 Sum_probs=66.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++..|..-+.|||+|.-.-..........| ..|....++.+--.
T Consensus 57 ~AdGyar~---tg~~gv~~~t~GpG~~n---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~l~~~~tk~ 128 (542)
T PRK05858 57 AAEAWAKL---TRVPGVAVLTAGPGVTN---GMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQ--EIDHVPFVAPVTKF 128 (542)
T ss_pred HHHHHHHh---cCCCeEEEEcCCchHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCCCCCc--ccchhhhhhhhhce
Confidence 45565544 34445556666777776 345677888899999999854332211111111 12445566666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|+ +++.+.+.+.+|+..+... .||+.|++-
T Consensus 129 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 162 (542)
T PRK05858 129 AATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFP 162 (542)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcC
Confidence 77775 6888888888888877665 479999864
|
|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=90.25 E-value=2.7 Score=44.62 Aligned_cols=105 Identities=21% Similarity=0.175 Sum_probs=66.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|. ..++-.++++..|=|.++ .--++.-|...+.|||+|.-.-...... ...+...|....++.+--.
T Consensus 56 ~Adgyar---~tg~~gv~~~t~GpG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 127 (563)
T PRK08527 56 AADGYAR---ASGKVGVAIVTSGPGFTN---AVTGLATAYMDSIPLVLISGQVPNSLIG--TDAFQEIDAVGISRPCVKH 127 (563)
T ss_pred HHHHHHh---hhCCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCCcccchhhhhhcccce
Confidence 4445443 334456677777888886 3456777888899999998532211100 1111112444455555555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+++++|++.++.+. ||+.|++-
T Consensus 128 s~~v~--~~~~i~~~l~~A~~~a~s~~~GPV~l~iP 161 (563)
T PRK08527 128 NYLVK--SIEELPRILKEAFYIARSGRPGPVHIDIP 161 (563)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 55664 79999999999998888765 79999864
|
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=90.01 E-value=2.6 Score=44.98 Aligned_cols=105 Identities=25% Similarity=0.256 Sum_probs=66.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.. .++-.++++..|=|.++ .--++.-|..-+.|||+|+-.-...... ...+...|....++.+--.
T Consensus 66 ~Adgyar~---tg~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 137 (585)
T CHL00099 66 AADGYARS---TGKVGVCFATSGPGATN---LVTGIATAQMDSVPLLVITGQVGRAFIG--TDAFQEVDIFGITLPIVKH 137 (585)
T ss_pred HHHHHHHh---cCCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCccccchhhhhcCceeE
Confidence 34444433 34455667777888886 3456777888899999998543211100 0111122444555666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|+ +++++.+++++|++.++.+. ||+.|++-
T Consensus 138 ~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP 171 (585)
T CHL00099 138 SYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDIP 171 (585)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEecC
Confidence 66776 78899999999988877654 79999864
|
|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=89.67 E-value=2.7 Score=44.93 Aligned_cols=106 Identities=17% Similarity=0.088 Sum_probs=65.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccc--cc-c---CCccHHHHH
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS--EQ-F---RSDGIVVKG 318 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~--~~-~---~~~~ia~~a 318 (364)
+|-|.|.+ .+ -.++++..|=|+++ ..-++.-|..-+.|||+|+-.-......... .+ . ......+.+
T Consensus 69 mAdgyaR~---tg-~gv~~~t~GpG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (578)
T PLN02573 69 AADGYARA---RG-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCF 141 (578)
T ss_pred HHHHHHHH---hC-CCeEEEecCccHHH---HHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHh
Confidence 45555443 34 56777778888886 3356777888899999998643322111000 00 0 001112445
Q ss_pred hhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 319 RAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 319 ~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
+.+--...+|. +++++.+.+++|+..|+...+|+.|++-
T Consensus 142 ~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~gPV~l~iP 180 (578)
T PLN02573 142 QTVTCYQAVIN--NLEDAHELIDTAISTALKESKPVYISVS 180 (578)
T ss_pred hceEEEEEEeC--CHHHHHHHHHHHHHHHHhcCCCEEEEee
Confidence 55555566665 6778888888888888778899999873
|
|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=89.56 E-value=2 Score=45.71 Aligned_cols=107 Identities=18% Similarity=0.154 Sum_probs=68.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccccccc----c--cccCC-ccHHHH
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI----S--EQFRS-DGIVVK 317 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~----~--~~~~~-~~ia~~ 317 (364)
+|-|.|.. .++-.++++..|=|.++ ..-++..|..-+.|||+|+-.-........ . ..+.. .|....
T Consensus 65 ~Adgyar~---tgk~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~ 138 (569)
T PRK08327 65 MAHGYALV---TGKPQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGL 138 (569)
T ss_pred HHHHHHHh---hCCCeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHH
Confidence 44555443 34445666667888876 446688888889999999875432211100 0 00111 245556
Q ss_pred HhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 318 GRAYGIRSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 318 a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
++.+--...+|+ +++++..++.+|+..++.+ .||+.||+-
T Consensus 139 ~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 139 VREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred HhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 666555556676 6889999999999888775 589999864
|
|
| >cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family | Back alignment and domain information |
|---|
Probab=89.49 E-value=5.7 Score=38.69 Aligned_cols=84 Identities=19% Similarity=0.049 Sum_probs=57.8
Q ss_pred eEEEEeCCCc--cccccHHHHHHHHHHcCCCEEEEEEcCC-c--ccccccc--cccCCc-cHHHHHhhcCeEEEEEeCCC
Q 017890 261 CAVAYTGDGG--TSEGDFHAALNFAAVMEAPVVFICRNNG-W--AISTNIS--EQFRSD-GIVVKGRAYGIRSIRVDGND 332 (364)
Q Consensus 261 ~vv~~~GDGa--~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~--ais~~~~--~~~~~~-~ia~~a~a~G~~~~~VDGnD 332 (364)
.++.++.||. .++|...+.+.-|...++-++||+.+|. - +|..... ...... .+......|++|.+.|- +|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 7999999999 8888877778888888996666655543 2 3321111 011111 45677889999998775 48
Q ss_pred HHHHHHHHHHHHH
Q 017890 333 ALAVYTAVQAARE 345 (364)
Q Consensus 333 ~~av~~a~~~A~~ 345 (364)
+.++-+++..++.
T Consensus 245 ~~~lp~~l~~~lr 257 (266)
T cd01460 245 LNQLPSVLSDALR 257 (266)
T ss_pred hhHhHHHHHHHHH
Confidence 9999988877753
|
The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function. |
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.48 E-value=3.4 Score=43.87 Aligned_cols=104 Identities=15% Similarity=0.007 Sum_probs=61.6
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++.-|..-++|+|+|.-+-....... ..+...+..+.++.+-..
T Consensus 56 ~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~~~l~~~itk~ 127 (574)
T PRK09124 56 AAGAEAQL---TGELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQELFRECSHY 127 (574)
T ss_pred HHHHHHHh---hCCcEEEEECCCCCHHH---HHHHHHHHhhcCCCEEEEecCCccccCCC--CCccccChhhhcccceee
Confidence 45555543 23333344445777765 23457778888999999986433211111 111112344455544445
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
..+|+ +++++.+.+++|+..|....+|+.|++
T Consensus 128 ~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~i 159 (574)
T PRK09124 128 CELVS--NPEQLPRVLAIAMRKAILNRGVAVVVL 159 (574)
T ss_pred eEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 55665 677888888888877777779999986
|
|
| >PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed | Back alignment and domain information |
|---|
Probab=89.45 E-value=2.4 Score=43.12 Aligned_cols=108 Identities=16% Similarity=0.141 Sum_probs=69.4
Q ss_pred chhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccccccCCccHHHHHhh
Q 017890 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~~~~~~~ia~~a~a 320 (364)
.+.+|+|+++| +.++++.+-=++++ -.+|.+-+|+..++|+++++-+-+ =+...|+.-. ..+-...+..+
T Consensus 59 A~~~a~GAs~a------G~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~-q~D~~~~~~~~ 129 (375)
T PRK09627 59 GISVALGASMS------GVKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVA-QGDVNQAKNPT 129 (375)
T ss_pred HHHHHHHHHhh------CCCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccc-hHHHHHHhcCC
Confidence 36778888887 23466665445554 257899999999999988776653 2222222110 01112223333
Q ss_pred ---cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 321 ---YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 321 ---~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
|+|- .+.-.|+.+.++.+.+|.+.+.+-.-|++|-..+
T Consensus 130 hgd~~~i--vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~ 170 (375)
T PRK09627 130 HGDFKSI--ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE 170 (375)
T ss_pred CCCcCcE--EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch
Confidence 3443 4566689999999999999998888999886543
|
|
| >TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=89.33 E-value=2 Score=45.88 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=70.0
Q ss_pred chhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccH-HHHHhh
Q 017890 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGI-VVKGRA 320 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~i-a~~a~a 320 (364)
.+.+|+|+++|- .++++.+-=.+++ -.+|.|.+|+..++|+|+++-+..- .+++..-+....|+ ..+.-+
T Consensus 249 A~~~a~GAs~aG------~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~g-pstg~~t~~eq~D~~~~~~~~ 319 (562)
T TIGR03710 249 AINMAIGASYAG------ARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRGG-PSTGLPTKTEQSDLLFALYGG 319 (562)
T ss_pred HHHHHHhHHhcC------CceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccCC-CCCCCCCCccHHHHHHHhcCC
Confidence 367788888872 3455555445554 3689999999999998777766542 22211111111222 222222
Q ss_pred ---cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 321 ---YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 321 ---~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
++|.++ .-.|+.++++.+.+|.+.+.+-.-|++|-..++
T Consensus 320 hgd~~~ivl--~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~ 361 (562)
T TIGR03710 320 HGEFPRIVL--APGSPEECFYLAIEAFNLAEKYQTPVIVLSDQY 361 (562)
T ss_pred CCCcCceEE--cCCCHHHHHHHHHHHHHHHHHhcCCEEEEechH
Confidence 345444 556899999999999999998899999866554
|
The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions. |
| >cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins | Back alignment and domain information |
|---|
Probab=88.99 E-value=3.7 Score=36.96 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=39.8
Q ss_pred CCCEEEEEEcCCcccccccccccCCccHHHHHhhc-CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 287 EAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAY-GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 287 ~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~-G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
++||++++..-++....+++ ..+++ ...+++ |+.++.- -|..+...+++.+.+ .++|++|
T Consensus 103 ~~pv~i~~~~gg~~~~G~th---s~~~~-a~lr~iPg~~V~~P--sd~~e~~~~l~~~~~----~~~P~~~ 163 (167)
T cd07036 103 KVPIVIRGPNGGGIGGGAQH---SQSLE-AWFAHIPGLKVVAP--STPYDAKGLLKAAIR----DDDPVIF 163 (167)
T ss_pred cCCEEEEEeCCCCCCcChhh---hhhHH-HHHhcCCCCEEEee--CCHHHHHHHHHHHHh----CCCcEEE
Confidence 58999999776665444432 23344 334443 7766654 378889988988886 4689876
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain |
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.45 E-value=4 Score=43.44 Aligned_cols=91 Identities=14% Similarity=0.039 Sum_probs=59.2
Q ss_pred CeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHH
Q 017890 260 ACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTA 339 (364)
Q Consensus 260 ~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a 339 (364)
.++++..|=|.++ ..-++..|..-+.|||+|+-........ .. ..-+....++.+--...+|+ +++++.+.
T Consensus 83 gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~i~G~~~~~~~~--~~--~~~d~~~~~~~vtk~~~~v~--~~~~~~~~ 153 (565)
T PRK06154 83 GVFAVQYGPGAEN---AFGGVAQAYGDSVPVLFLPTGYPRGSTD--VA--PNFESLRNYRHITKWCEQVT--LPDEVPEL 153 (565)
T ss_pred EEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCccccc--CC--CCcchhhhHhhcceeEEECC--CHHHHHHH
Confidence 3444556888876 3456778888899999998543321110 00 01123345555555566675 78899999
Q ss_pred HHHHHHHhhcC-CCcEEEEEE
Q 017890 340 VQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 340 ~~~A~~~ar~~-~~P~LIea~ 359 (364)
+.+|++.|+.+ .||+.|++-
T Consensus 154 i~~A~~~A~s~~~GPV~l~iP 174 (565)
T PRK06154 154 MRRAFTRLRNGRPGPVVLELP 174 (565)
T ss_pred HHHHHHHHhcCCCceEEEecc
Confidence 99999888775 589999864
|
|
| >PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 | Back alignment and domain information |
|---|
Probab=88.38 E-value=6.7 Score=35.19 Aligned_cols=106 Identities=14% Similarity=0.075 Sum_probs=59.7
Q ss_pred chhHHHHHHHHhhhccC-CCeEEEEeCCCccc-cccHHHHHH-HHHHcCCCEEEEEEcCCc--ccccccccccCCccHHH
Q 017890 242 QLPQAVGVAYSLKMEKK-DACAVAYTGDGGTS-EGDFHAALN-FAAVMEAPVVFICRNNGW--AISTNISEQFRSDGIVV 316 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~-~~~vv~~~GDGa~~-eG~~~EALn-~Aa~~~LPvIfVV~NNg~--ais~~~~~~~~~~~ia~ 316 (364)
.+++|+|+|++ ++ ..+++..+++=... +-...+.+. ..+..++|+. |+..-++ +...+++ .+.++++-
T Consensus 60 ~vg~a~GlA~~----G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH--~s~~d~~~ 132 (178)
T PF02779_consen 60 MVGMAAGLALA----GGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTH--HSIEDEAI 132 (178)
T ss_dssp HHHHHHHHHHH----SSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTT--SSSSHHHH
T ss_pred ccceeeeeeec----ccccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccc--cccccccc
Confidence 35667777765 32 33455555544330 023445554 6777889998 5554444 4444333 23344443
Q ss_pred HHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 317 KGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 317 ~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
...--|+.++.-- |+.++..+++.+++. +.++|++|-.
T Consensus 133 ~~~iPg~~v~~Ps--d~~e~~~~l~~a~~~--~~~~P~~ir~ 170 (178)
T PF02779_consen 133 LRSIPGMKVVVPS--DPAEAKGLLRAAIRR--ESDGPVYIRE 170 (178)
T ss_dssp HHTSTTEEEEE-S--SHHHHHHHHHHHHHS--SSSSEEEEEE
T ss_pred cccccccccccCC--CHHHHHHHHHHHHHh--CCCCeEEEEe
Confidence 3333488777543 788999999988862 2478998753
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B .... |
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.33 E-value=4.3 Score=43.35 Aligned_cols=105 Identities=18% Similarity=0.013 Sum_probs=62.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++..|..-+.|||+|.-.-....... ......+....++.+--.
T Consensus 56 mAdgyar~---tgk~~v~~v~~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~Qe~d~~~l~~~~tk~ 127 (578)
T PRK06546 56 AAAAEAQL---TGKLAVCAGSCGPGNLH---LINGLYDAHRSGAPVLAIASHIPSAQIGS--GFFQETHPDRLFVECSGY 127 (578)
T ss_pred HHHhHHHh---hCCceEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCC--CCccccChhhhcccceee
Confidence 44454443 23334555556777776 23457778888999999985322111100 011112333444444334
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..+|. +++++.+++.+|++.|....||+.|++-
T Consensus 128 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~lP 160 (578)
T PRK06546 128 CEMVS--SAEQAPRVLHSAIQHAVAGGGVSVVTLP 160 (578)
T ss_pred EeEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 55665 6888888899998888877799999864
|
|
| >PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=87.42 E-value=5.3 Score=40.92 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=71.0
Q ss_pred chhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
.+.+++|+++| +.++++.+-=.+++ -.+|.|.+|+-.++|+++++-|-..+. |..-.....|+- -.+..
T Consensus 62 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~~R~~~~--p~~i~~d~~D~~-~~rd~ 130 (394)
T PRK08367 62 AISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIGNRALSA--PINIWNDWQDTI-SQRDT 130 (394)
T ss_pred HHHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEECCCCCCC--CCCcCcchHHHH-hcccc
Confidence 46778888887 23455554434443 368999999999999999886654432 322111111221 22346
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcCC--CcEEEEEEeecc
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISEK--RPVLVEVRLNFL 363 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~~--~P~LIea~T~R~ 363 (364)
||-.+-. .|+.+.++-+..|.+.+.+.+ -|+++-..+||+
T Consensus 131 g~~~~~a--~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~ 172 (394)
T PRK08367 131 GWMQFYA--ENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL 172 (394)
T ss_pred CeEEEeC--CCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh
Confidence 7766543 689999999999999888433 799998777654
|
|
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=87.38 E-value=4.9 Score=42.26 Aligned_cols=106 Identities=20% Similarity=0.103 Sum_probs=65.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++..++++..|=|.++ .--++..|..-+.|||+|+-.-.+.......-+ ...+..+.++.+--.
T Consensus 63 ~Adgyar~---tg~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~tk~ 135 (530)
T PRK07092 63 MADGYAQA---TGNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYVKW 135 (530)
T ss_pred HHHHHHHH---hCCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhcccccc
Confidence 56666543 34555666667877774 445677888889999999864333211110000 112334445544434
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+| .+++++.+.+.+|+..++... ||+.|++-
T Consensus 136 ~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (530)
T PRK07092 136 SIEP--ARAEDVPAAIARAYHIAMQPPRGPVFVSIP 169 (530)
T ss_pred eeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcc
Confidence 4455 478888888999988887775 79999864
|
|
| >KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.27 E-value=4.1 Score=42.46 Aligned_cols=102 Identities=27% Similarity=0.303 Sum_probs=63.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-CcccccccccccCCccHHHHHhhc-C
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISEQFRSDGIVVKGRAY-G 322 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~~~~~~~~ia~~a~a~-G 322 (364)
+|-|.|.+ .++..+|++..|-|+++- -.-+.-|-.-+.|+|++---= .-+|.+ +.+...++...-+++ -
T Consensus 144 aAegYaR~---sgKPGvvlvTSGPGATNv---vtp~ADAlaDg~PlVvftGQVptsaIGt---DAFQEadiVgisRScTK 214 (675)
T KOG4166|consen 144 AAEGYARS---SGKPGVVLVTSGPGATNV---VTPLADALADGVPLVVFTGQVPTSAIGT---DAFQEADIVGISRSCTK 214 (675)
T ss_pred hhhhhhhh---cCCCcEEEEecCCCcccc---cchhhHHhhcCCcEEEEecccchhhccc---chhccCCeeeeeeccce
Confidence 34565544 357789999999999972 233556666788987664210 112222 122223344333444 3
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEE
Q 017890 323 IRSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEV 358 (364)
Q Consensus 323 ~~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea 358 (364)
|.+.. .|++++-.-+.+|.+.|..++ +|+||++
T Consensus 215 wNvmV---kdVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 215 WNVMV---KDVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred eheee---ecHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 54443 379999999999999887765 7999985
|
|
| >PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=87.22 E-value=4.9 Score=41.30 Aligned_cols=108 Identities=20% Similarity=0.188 Sum_probs=72.0
Q ss_pred chhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
.+.+++|++++- .++++.+-=.+++ -.+|.|..|+-.++|+|+++-+-+.....++. ....|+.. ++.-
T Consensus 68 A~~~~~GAs~aG------aRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~~~~~~~i~--~d~~D~~~-~r~~ 136 (407)
T PRK09622 68 AMSACVGAAAAG------GRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRALAAPLNVN--GDHSDMYL-SRDS 136 (407)
T ss_pred HHHHHHHHHhhC------cCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccccCCCcCCC--chHHHHHH-HhcC
Confidence 366788888872 3455555444444 36899999999999998888887753222221 11122322 2334
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcC--CCcEEEEEEeec
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISE--KRPVLVEVRLNF 362 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~--~~P~LIea~T~R 362 (364)
||.++ .-.++.+.++.+..|.+.+.+- .-|++|-..+++
T Consensus 137 g~ivl--~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~ 177 (407)
T PRK09622 137 GWISL--CTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFL 177 (407)
T ss_pred CeEEE--eCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhh
Confidence 55554 5568999999999999988776 789998776654
|
|
| >TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase | Back alignment and domain information |
|---|
Probab=87.13 E-value=2.3 Score=43.55 Aligned_cols=107 Identities=15% Similarity=0.091 Sum_probs=61.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ..-++.-|..-+.|||+|+-.-....... ......+..+.++.+--.
T Consensus 53 mAdgyar~---tg~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~tk~ 124 (432)
T TIGR00173 53 FALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTADRPPELRGC--GANQTIDQPGLFGSYVRW 124 (432)
T ss_pred HHHHHHhc---cCCCEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCCCCHHHhCC--CCCcccchhhHHhhccce
Confidence 45555543 34556677777888776 34567777788899999985432111100 011112444555555544
Q ss_pred EEEEeC-CC---HHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDG-ND---ALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDG-nD---~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|.- .+ +..+.+.+++|+..|..+. ||+.|++-
T Consensus 125 ~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 164 (432)
T TIGR00173 125 SLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVP 164 (432)
T ss_pred eeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCC
Confidence 555542 11 1226666777776666644 89999864
|
2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis. |
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=87.02 E-value=3.8 Score=43.97 Aligned_cols=103 Identities=17% Similarity=0.090 Sum_probs=65.3
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHc--CCCEEEEEEcCCcccccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVM--EAPVVFICRNNGWAISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~--~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a 320 (364)
+.+|+|+++| +.++++.+--.+++ -..|.|..++.. .+|+|+++.|..--.++ +...+|.. .++.
T Consensus 59 ~~~~~GAs~a------G~ra~t~ts~~Gl~--~~~e~l~~~~~~g~~~~iV~~~~~~~gp~~~----~~~q~d~~-~~~~ 125 (595)
T TIGR03336 59 VEVAAGAAWS------GLRAFCTMKHVGLN--VAADPLMTLAYTGVKGGLVVVVADDPSMHSS----QNEQDTRH-YAKF 125 (595)
T ss_pred HHHHHHHHhc------CcceEEEccCCchh--hhHHHhhhhhhhcCcCceEEEEccCCCCccc----hhhHhHHH-HHHh
Confidence 5578888886 23455555444443 245667666644 45787777765221221 21222322 3445
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
.+|+++.. .|+.++++.+.+|.+.+++-+-|++|-..+
T Consensus 126 ~~~~vl~p--~~~qE~~d~~~~Af~lae~~~~PV~v~~d~ 163 (595)
T TIGR03336 126 AKIPCLEP--STPQEAKDMVKYAFELSEKFGLPVILRPTT 163 (595)
T ss_pred cCCeEECC--CCHHHHHHHHHHHHHHHHHHCCCEEEEEee
Confidence 68886644 479999999999999999999999987754
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=86.54 E-value=5.2 Score=43.33 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=59.1
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHH-HHHHHHcCCCEEEEEEcCCcc-cccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAA-LNFAAVMEAPVVFICRNNGWA-ISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EA-Ln~Aa~~~LPvIfVV~NNg~a-is~~~~~~~~~~~ia~~a~a 320 (364)
++.|+|+|++ .-++++++ =+.|.+ -..+- .+-++..++||++++...|+. ...+++.+ ..+++-...-
T Consensus 365 vg~AaGlA~~-----G~~Pvv~~--~a~Fl~-ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~--~~dia~lr~i 434 (617)
T TIGR00204 365 VTFAAGMAIE-----GYKPFVAI--YSTFLQ-RAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQG--AFDISYLRCI 434 (617)
T ss_pred HHHHHHHHHC-----CCEEEEEe--cHHHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCCCCCccccc--chHHHHHhcC
Confidence 3455555532 23444444 345544 33333 366788999999999888763 22333322 3444433333
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
-|+.++.- -|+.+++.+++.|++. .++|++|-.
T Consensus 435 Pgl~V~~P--sd~~e~~~~l~~a~~~---~~~Pv~ir~ 467 (617)
T TIGR00204 435 PNMVIMAP--SDENELRQMLYTGYHY---DDGPIAVRY 467 (617)
T ss_pred CCcEEEee--CCHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 46666654 3788899999888752 348988753
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >PRK11892 pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=86.16 E-value=5.3 Score=41.86 Aligned_cols=97 Identities=22% Similarity=0.185 Sum_probs=58.2
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEe-CCCccccccHHHHHHHHH--------HcCCCEEEEEEcCCcccccccccccCCcc
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYT-GDGGTSEGDFHAALNFAA--------VMEAPVVFICRNNGWAISTNISEQFRSDG 313 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~-GDGa~~eG~~~EALn~Aa--------~~~LPvIfVV~NNg~ais~~~~~~~~~~~ 313 (364)
+++|+|+|++ .-++++.++ .+-... .+..-.|-++ .+++||+|+..|.+...... +.+.++
T Consensus 202 vg~AaGlA~~-----G~rPiv~~~~~~f~~r--a~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~---hhs~~d 271 (464)
T PRK11892 202 AGIGVGAAFA-----GLKPIVEFMTFNFAMQ--AIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA---QHSQDY 271 (464)
T ss_pred HHHHHHHHhC-----CCEEEEEEehHHHHHH--HHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC---ccccCH
Confidence 4566666653 234444443 222221 2334456677 78999999998887644333 333444
Q ss_pred HHHHHhh-cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 314 IVVKGRA-YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 314 ia~~a~a-~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
++ ..+. -|+.++.- -|..+.+..++.|++ .++|++|
T Consensus 272 ~a-~~~~iPgl~V~~P--~d~~d~~~ll~~ai~----~~~Pv~i 308 (464)
T PRK11892 272 AA-WYSHIPGLKVVAP--YSAADAKGLLKAAIR----DPNPVIF 308 (464)
T ss_pred HH-HHhhCCCCEEEEe--CCHHHHHHHHHHHhh----CCCcEEE
Confidence 43 3333 37777653 378888888888875 4689986
|
|
| >COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.24 E-value=2.6 Score=37.62 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=65.3
Q ss_pred cchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccC-CccHHHHHh
Q 017890 241 TQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFR-SDGIVVKGR 319 (364)
Q Consensus 241 ~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~-~~~ia~~a~ 319 (364)
.+++++.|+.+|-| +..+.+--- ++.. ++..--.+=.++++|++.++...|+-...- ..|.+ +.-+.+..+
T Consensus 53 eg~GIcAGa~lAGk-----k~ailmQns-GlGN-siNal~SL~~ty~iPl~ml~ShRG~~~E~i-~AQVpmGr~~~kiLe 124 (172)
T COG4032 53 EGVGICAGAYLAGK-----KPAILMQNS-GLGN-SINALASLYVTYKIPLLMLASHRGVLKEGI-EAQVPMGRALPKILE 124 (172)
T ss_pred cceeeehhhhhcCC-----CcEEEEecc-Ccch-HHHHHHHHHHHhccchhhhhhccchhhcCC-ccccccchhhHHHHh
Confidence 34567889888742 334433322 2211 122211223468899999888777632211 11222 234556778
Q ss_pred hcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 320 a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
..+++.+++.+ +++-++.+..+...+-+..+|+.+
T Consensus 125 ~~~lpt~t~~~--p~Ea~~li~~~~~~a~~~s~pv~v 159 (172)
T COG4032 125 GLELPTYTIIG--PEEALPLIENAILDAFENSRPVAV 159 (172)
T ss_pred hcCCcccccCC--HHHHHHHHHHHHHHHHHcCCceEE
Confidence 89999999885 778788888888888888999865
|
|
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=85.17 E-value=5.5 Score=43.42 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=53.4
Q ss_pred ccccccHHHHHHHHHHcCCCEEEEEEcCCcc--cccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHh
Q 017890 270 GTSEGDFHAALNFAAVMEAPVVFICRNNGWA--ISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMA 347 (364)
Q Consensus 270 a~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a--is~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~a 347 (364)
.|.+ -.++++..++..++||++|.-..+++ -.++++ .+.++++-.-.--|+.+++-- |..++..+++.|++
T Consensus 430 ~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~TH--q~iedia~lr~iPn~~v~~Pa--D~~E~~~~~~~a~~-- 502 (653)
T TIGR00232 430 MFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTH--QPIEQLASLRAIPNLSVWRPC--DGNETAAAWKYALE-- 502 (653)
T ss_pred HHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCccc--CCHHHHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHh--
Confidence 4543 55778888999999999999877665 344544 233444433222367776643 78889999988874
Q ss_pred hcCCCcEEEE
Q 017890 348 ISEKRPVLVE 357 (364)
Q Consensus 348 r~~~~P~LIe 357 (364)
+.++|+.|-
T Consensus 503 -~~~gP~~ir 511 (653)
T TIGR00232 503 -SQDGPTALI 511 (653)
T ss_pred -cCCCcEEEE
Confidence 246898874
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.94 E-value=6.2 Score=40.01 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=71.4
Q ss_pred cchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccc-cccccCCccHHHHHh
Q 017890 241 TQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTN-ISEQFRSDGIVVKGR 319 (364)
Q Consensus 241 ~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~-~~~~~~~~~ia~~a~ 319 (364)
..+.+++|+++|- .+..-...|.|-.- .+|++-+|+-..+|+++++-+........ +.. -..+-...+..
T Consensus 58 ~a~s~v~GA~~aG-----ar~~TaTSg~Gl~L---m~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~-dq~D~~~~r~~ 128 (365)
T COG0674 58 GAISAVIGASYAG-----ARAFTATSGQGLLL---MAEALGLAAGTETPLVIVVAQRPLPSTGLPIKG-DQSDLMAARDT 128 (365)
T ss_pred HHHHHHHHHHhhC-----cceEeecCCccHHH---HHHHHHHHHhccCCeEEEEeccCcCCCcccccc-cHHHHHHHHcc
Confidence 4577889998873 23444455655554 68999999999999999988887543322 111 11121222222
Q ss_pred hcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 320 a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
||+.+-.. |+.+.++..-.|.+.|.+..-|+++-..-+
T Consensus 129 --g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~ 166 (365)
T COG0674 129 --GFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGF 166 (365)
T ss_pred --CceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccc
Confidence 88877666 788888888888888887788988754433
|
|
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=84.65 E-value=5.7 Score=43.35 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=62.7
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhhc
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a~ 321 (364)
.+|.|+|. .+.-+++++.+. .|.+ -.++.+..++..++||+|++...+.+. .++++. ..++++-.-.--
T Consensus 417 ~~AaGlA~----~~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq--~iedia~lR~iP 487 (661)
T PTZ00089 417 AIMNGIAA----HGGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQ--PVETLALLRATP 487 (661)
T ss_pred HHHHHHHH----cCCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcc--cHHHHHHHhcCC
Confidence 45555554 122245555553 6665 677889999999999999997777553 344432 223443221112
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
++.+++- -|..++..+++.|++ ..++|+.|-.
T Consensus 488 n~~V~~P--aD~~E~~~~l~~al~---~~~gP~~irl 519 (661)
T PTZ00089 488 NLLVIRP--ADGTETSGAYALALA---NAKTPTILCL 519 (661)
T ss_pred CcEEEec--CCHHHHHHHHHHHHH---cCCCCEEEEe
Confidence 5555543 378889888888874 2468988754
|
|
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.30 E-value=6.1 Score=43.01 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=60.6
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHH-HHHHHcCCCEEEEEEcCCcc-cccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAAL-NFAAVMEAPVVFICRNNGWA-ISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EAL-n~Aa~~~LPvIfVV~NNg~a-is~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|++ .-++++..+. .|.+ ...+.+ +.++..++||+++++..|+. ..++++.+ ..+++-...-
T Consensus 374 vg~AaGlA~~-----G~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~--~~dia~lr~i 443 (641)
T PRK12571 374 VTFAAGLAAA-----GLKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAG--AFDLAFLTNL 443 (641)
T ss_pred HHHHHHHHHC-----CCEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccc--cHHHHHHhcC
Confidence 3455555542 2345555544 4544 345555 66888999999999777753 23344332 2344433333
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
-|+.++.- -|..+++.+++.|++. .++|++|-.
T Consensus 444 Pnl~V~~P--sd~~e~~~~l~~a~~~---~~~P~~ir~ 476 (641)
T PRK12571 444 PNMTVMAP--RDEAELRHMLRTAAAH---DDGPIAVRF 476 (641)
T ss_pred CCCEEEee--CCHHHHHHHHHHHHhC---CCCcEEEEE
Confidence 46766653 3788899999888752 368998753
|
|
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=82.52 E-value=9.6 Score=41.19 Aligned_cols=102 Identities=19% Similarity=0.119 Sum_probs=62.8
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|+. +.-+++++.+ ..|. .-.++++.+++..++||+++....++.. .++++ | ..++++-...-
T Consensus 380 vg~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH-q-~~edia~~r~i 450 (624)
T PRK05899 380 AAIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH-Q-PVEQLASLRAI 450 (624)
T ss_pred HHHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc-c-cHHHHHHHHhC
Confidence 3455555532 3233444433 2443 4577888888889999999998888643 45555 2 23344433333
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
-|+.++.- -|..++..+++.+++. .++|++|-.
T Consensus 451 P~~~V~~P--~d~~e~~~~l~~a~~~---~~~P~~ir~ 483 (624)
T PRK05899 451 PNLTVIRP--ADANETAAAWKYALER---KDGPSALVL 483 (624)
T ss_pred CCcEEEeC--CCHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 46666653 3788899999888862 368988754
|
|
| >PLN02683 pyruvate dehydrogenase E1 component subunit beta | Back alignment and domain information |
|---|
Probab=82.19 E-value=12 Score=37.69 Aligned_cols=99 Identities=19% Similarity=0.103 Sum_probs=55.9
Q ss_pred chhHHHHHHHHhhhccCCCeEEEEe-CCCccccccHHHHHHHHHHcC--------CCEEEEEEcCCcccccccccccCCc
Q 017890 242 QLPQAVGVAYSLKMEKKDACAVAYT-GDGGTSEGDFHAALNFAAVME--------APVVFICRNNGWAISTNISEQFRSD 312 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~~~~vv~~~-GDGa~~eG~~~EALn~Aa~~~--------LPvIfVV~NNg~ais~~~~~~~~~~ 312 (364)
.++.|+|+|++ | .++++++. .|=. +=.+..-.+-++.++ +||++++.+....-..+++.+.
T Consensus 86 ~vg~AaGlA~~----G-~~P~v~~~~~~f~--~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~--- 155 (356)
T PLN02683 86 FTGIGVGAAYA----G-LKPVVEFMTFNFS--MQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQC--- 155 (356)
T ss_pred HHHHHHHHHHC----C-CEEEEEEehhhHH--HHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccC---
Confidence 34566666653 2 24444443 2222 111233346666665 8999998874322234444222
Q ss_pred cHHHHHhhc-CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 313 GIVVKGRAY-GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 313 ~ia~~a~a~-G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
.+ ...++. |+.++.-- |..+++.+++.|.+ .++|+.|-
T Consensus 156 ~~-a~lr~iPnl~V~~Pa--d~~e~~~~l~~a~~----~~gPv~ir 194 (356)
T PLN02683 156 FA-AWYSSVPGLKVLAPY--SSEDARGLLKAAIR----DPDPVVFL 194 (356)
T ss_pred HH-HHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----CCCcEEEE
Confidence 23 344443 77777643 78889998988875 46899884
|
|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=81.80 E-value=9.1 Score=41.15 Aligned_cols=102 Identities=12% Similarity=0.057 Sum_probs=59.4
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcC
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G 322 (364)
++.|.|+|+ .+ -+++++.+.+ |.+-.+..-.+-++..++||+|++...++.-.++++.. ..|++-...--|
T Consensus 333 v~~AaGlA~----~G-~~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~~--~~Dia~lr~iPn 403 (581)
T PRK12315 333 VAFASGIAA----NG-ARPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHLG--IFDIPMISNIPN 403 (581)
T ss_pred HHHHHHHHH----Cc-CeEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCccccc--cHHHHHHhcCCC
Confidence 344555543 23 3555555544 32222222345567889999999997776545555432 234443332236
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 323 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 323 ~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
+.++.= -|..++..+++.|++. .++|+.|-.
T Consensus 404 l~V~~P--~d~~e~~~~l~~a~~~---~~gP~~ir~ 434 (581)
T PRK12315 404 LVYLAP--TTKEELIAMLEWALTQ---HEHPVAIRV 434 (581)
T ss_pred CEEEec--CCHHHHHHHHHHHHhC---CCCcEEEEE
Confidence 666542 3788888889888752 368998753
|
|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=81.52 E-value=10 Score=40.55 Aligned_cols=101 Identities=13% Similarity=0.067 Sum_probs=60.3
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHH-HHHHHHHcCCCEEEEEEcCCccc-ccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHA-ALNFAAVMEAPVVFICRNNGWAI-STNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~E-ALn~Aa~~~LPvIfVV~NNg~ai-s~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|+. + -++++..+ ..|.. ...+ -.+.++..++||++++...++.. ..+++. ..++++-...-
T Consensus 334 vg~A~GlA~~----G-~~p~~~~f--~~F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~--~~edia~lr~i 403 (580)
T PRK05444 334 VTFAAGLATE----G-LKPVVAIY--STFLQ-RAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQ--GAFDLSYLRCI 403 (580)
T ss_pred HHHHHHHHHC----C-CeeEEEee--HHHHH-HHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCcccc--ccHHHHHHhcC
Confidence 3455566552 2 34444444 34543 3444 45557889999999998776532 233332 23445443333
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
-|+.++.- -|+.++..+++.|++. .++|++|-.
T Consensus 404 P~l~V~~P--sd~~e~~~~l~~a~~~---~~~P~~ir~ 436 (580)
T PRK05444 404 PNMVIMAP--SDENELRQMLYTALAY---DDGPIAIRY 436 (580)
T ss_pred CCCEEEee--CCHHHHHHHHHHHHhC---CCCcEEEEe
Confidence 47777764 3788999999988862 368988743
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 364 | ||||
| 1olu_A | 400 | Roles Of His291-Alpha And His146-Beta' In The Reduc | 3e-80 | ||
| 1x7y_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 3e-80 | ||
| 1v1m_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 3e-80 | ||
| 2j9f_A | 400 | Human Branched-Chain Alpha-Ketoacid Dehydrogenase- | 3e-80 | ||
| 1v16_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 3e-80 | ||
| 1dtw_A | 400 | Human Branched-Chain Alpha-Keto Acid Dehydrogenase | 3e-80 | ||
| 1x80_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 3e-80 | ||
| 1v11_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 3e-80 | ||
| 2bff_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 3e-80 | ||
| 1x7x_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 3e-80 | ||
| 1x7w_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 3e-80 | ||
| 1x7z_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 3e-80 | ||
| 2bfc_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 8e-80 | ||
| 2bfb_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 2e-79 | ||
| 2bfd_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 3e-79 | ||
| 2bfe_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 2e-78 | ||
| 1um9_A | 367 | Branched-chain 2-oxo Acid Dehydrogenase (e1) From T | 2e-44 | ||
| 1w85_A | 368 | The Crystal Structure Of Pyruvate Dehydrogenase E1 | 8e-43 | ||
| 3duf_A | 369 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 8e-43 | ||
| 1w88_A | 368 | The Crystal Structure Of Pyruvate Dehydrogenase E1( | 3e-42 | ||
| 3dva_A | 369 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 4e-42 | ||
| 2bp7_A | 410 | New Crystal Form Of The Pseudomonas Putida Branched | 4e-42 | ||
| 1qs0_A | 407 | Crystal Structure Of Pseudomonas Putida 2-Oxoisoval | 2e-39 | ||
| 3exe_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 2e-18 | ||
| 2ozl_A | 365 | Human Pyruvate Dehydrogenase S264e Variant Length = | 2e-18 | ||
| 3exf_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 4e-18 | ||
| 3exh_C | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 4e-18 | ||
| 3exi_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 6e-18 | ||
| 1ni4_A | 365 | Human Pyruvate Dehydrogenase Length = 365 | 3e-16 | ||
| 3hyl_A | 690 | Crystal Structure Of Transketolase From Bacillus An | 3e-05 | ||
| 2r5n_A | 669 | Crystal Structure Of Transketolase From Escherichia | 4e-05 | ||
| 1qgd_A | 662 | Transketolase From Escherichia Coli Length = 662 | 4e-05 |
| >pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
|
| >pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 400 | Back alignment and structure |
|
| >pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
|
| >pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
|
| >pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 367 | Back alignment and structure |
|
| >pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 | Back alignment and structure |
|
| >pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 | Back alignment and structure |
|
| >pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n, E183q) Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 | Back alignment and structure |
|
| >pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 | Back alignment and structure |
|
| >pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 410 | Back alignment and structure |
|
| >pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 407 | Back alignment and structure |
|
| >pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
|
| >pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365 | Back alignment and structure |
|
| >pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
|
| >pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
|
| >pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382 | Back alignment and structure |
|
| >pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase Length = 365 | Back alignment and structure |
|
| >pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis Length = 690 | Back alignment and structure |
|
| >pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli In Noncovalent Complex With Acceptor Aldose Ribose 5-Phosphate Length = 669 | Back alignment and structure |
|
| >pdb|1QGD|A Chain A, Transketolase From Escherichia Coli Length = 662 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400 | Back alignment and structure |
|---|
Score = 425 bits (1094), Expect = e-149
Identities = 137/275 (49%), Positives = 183/275 (66%)
Query: 83 DFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTL 142
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 8 QFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLL 67
Query: 143 QVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQ 202
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + Q RE GVL++R Y L+
Sbjct: 68 NTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLE 127
Query: 203 QFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACA 262
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K +
Sbjct: 128 LFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVV 187
Query: 263 VAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322
+ Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YG
Sbjct: 188 ICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYG 247
Query: 323 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357
I SIRVDGND AVY A + AR A++E +P L+E
Sbjct: 248 IMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIE 282
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Length = 368 | Back alignment and structure |
|---|
Score = 385 bits (990), Expect = e-133
Identities = 104/269 (38%), Positives = 145/269 (53%), Gaps = 11/269 (4%)
Query: 91 YTSEMRFIP--ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSV 148
T + F E ++ P F++L++ GE++ ++S E ++ MV +++D
Sbjct: 3 KTFQFPFAEQLEKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQR 62
Query: 149 LYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQV 208
RQGR FY T G+EA I S AL +DFILP YR+ ++W G L Q
Sbjct: 63 SISLNRQGRLGFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQA 118
Query: 209 FANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGD 268
F G Q+P N + I Q QA GVA LKM K A A+ YTGD
Sbjct: 119 FLFSRGHFHGNQIPEGV-----NVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGD 173
Query: 269 GGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRV 328
GGTS+GDF+ +NFA +AP +F+ +NN +AIST + +Q + + K A GI I+V
Sbjct: 174 GGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQV 233
Query: 329 DGNDALAVYTAVQAAREMAISEKRPVLVE 357
DG D LAVY AV+AARE AI+ + P L+E
Sbjct: 234 DGMDPLAVYAAVKAARERAINGEGPTLIE 262
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367 | Back alignment and structure |
|---|
Score = 383 bits (987), Expect = e-133
Identities = 100/253 (39%), Positives = 137/253 (54%), Gaps = 2/253 (0%)
Query: 106 VPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTI 165
R++ + GE + + E ++Y M+ +++D R G+ SF
Sbjct: 13 EEPIRLIGEEGEWLGDFPLD-LEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAA 71
Query: 166 GEEAINIGSAAALSAD-DFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIH 224
G EA + A A+ D++ P YR+ G+ L G L++ Q+ A KAD KGRQMP H
Sbjct: 72 GHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEH 131
Query: 225 YGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAA 284
GSK LN+ T++SPIA+ +P A G A S+K+ + AV GDG TSEGD++A +NFAA
Sbjct: 132 PGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAA 191
Query: 285 VMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAR 344
V AP VFI NN +AIS + Q S I K A+GI VDG D LA Y V+ A
Sbjct: 192 VQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAV 251
Query: 345 EMAISEKRPVLVE 357
E A + P LVE
Sbjct: 252 ERARRGEGPSLVE 264
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407 | Back alignment and structure |
|---|
Score = 385 bits (991), Expect = e-133
Identities = 99/259 (38%), Positives = 144/259 (55%), Gaps = 2/259 (0%)
Query: 100 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159
++++ RVLD+ G+ G + + ++ + M+ ++ DS + AQRQ + S
Sbjct: 45 DTADLSYSLVRVLDEQGDAQ-GPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMS 103
Query: 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGR 219
FY+ ++GEEAI G A AL+ D P YR+ +L+ R +L + Q+ +N+ D KGR
Sbjct: 104 FYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGR 163
Query: 220 QMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAA 279
Q+PI Y ++ + TIS +ATQ QAVG A + ++ A A+ GDG T+E DFH A
Sbjct: 164 QLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTA 223
Query: 280 LNFAAVMEAPVVFICRNNGWAISTNIS-EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYT 338
L FA V APV+ NN WAIST + S +G GI S+RVDGND +AVY
Sbjct: 224 LTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYA 283
Query: 339 AVQAAREMAISEKRPVLVE 357
A + A E A P L+E
Sbjct: 284 ASRWAAERARRGLGPSLIE 302
|
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 1e-47
Identities = 67/244 (27%), Positives = 108/244 (44%), Gaps = 23/244 (9%)
Query: 126 QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS-FYLTTIGEEAINIGSAAALSADDFI 184
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D +
Sbjct: 30 VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 89
Query: 185 LPQYREPGVLLWRGYTLQQFANQVFA---NKAD---DGKGRQMPIHYGSKKL---NYITI 235
+ YR G RG ++ ++ A + GKG M H +K N I
Sbjct: 90 ITAYRAHGFTFTRGLSV----REILAELTGRKGGCAKGKGGSM--HMYAKNFYGGNGI-- 141
Query: 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR 295
+ Q+P G+A + K KD + GDG ++G A N AA+ + P +FIC
Sbjct: 142 ---VGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICE 198
Query: 296 NNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVL 355
NN + + T++ S R I +RVDG D L V A + A S K P+L
Sbjct: 199 NNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPIL 256
Query: 356 VEVR 359
+E++
Sbjct: 257 MELQ 260
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 20/125 (16%)
Query: 243 LPQAVGVAYSLK-MEKKDACAVAYT----GDGGTSEGDFHAALNFAAVME-APVVFICRN 296
L A G+AY+ K +K GDG SEG A+ FA++ + +V I
Sbjct: 127 LGAACGMAYTGKYFDKASY----RVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDI 182
Query: 297 NGWAISTNISEQFRSDGIVVKGR--AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPV 354
N S Q + D + + R A+G +I VDG+ + A A+ +P
Sbjct: 183 NRLGQSDPAPLQHQMD--IYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKH------QPT 234
Query: 355 LVEVR 359
+ +
Sbjct: 235 AIIAK 239
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Length = 632 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 296 NNGWAISTNISEQFRSDGIVVKGR--AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRP 353
+N +I ++ F + VK R A G + ++G+D + A++ A++ +P
Sbjct: 181 SNNISIEGDVGLAFNEN---VKMRFEAQGFEVLSINGHDYEEINKALEQAKK----STKP 233
Query: 354 VLVEVR 359
L+ +
Sbjct: 234 CLIIAK 239
|
| >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* Length = 845 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 4e-04
Identities = 22/126 (17%), Positives = 36/126 (28%), Gaps = 9/126 (7%)
Query: 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEG----DFHAALNFAAVMEAPVVFICRNNG 298
L A+ AY M GDG G + + + V+ I NG
Sbjct: 177 LGYALSHAYGAVMNNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNG 236
Query: 299 WAISTNISEQFRSDG-IVVKGRAYGIRSIRV----DGNDALAVYTAVQAAREMAISEKRP 353
+ I+ SD + R G D D ++++ E E
Sbjct: 237 YKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICD 296
Query: 354 VLVEVR 359
+ +
Sbjct: 297 IKAAAQ 302
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 364 | |||
| 2bfd_A | 400 | 2-oxoisovalerate dehydrogenase alpha subunit; oxid | 100.0 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; hete | 100.0 | |
| 1w85_A | 368 | Pyruvate dehydrogenase E1 component, alpha subunit | 100.0 | |
| 1umd_A | 367 | E1-alpha, 2-OXO acid dehydrogenase alpha subunit; | 100.0 | |
| 2ozl_A | 365 | PDHE1-A type I, pyruvate dehydrogenase E1 componen | 100.0 | |
| 2jgd_A | 933 | 2-oxoglutarate dehydrogenase E1 component; flavopr | 100.0 | |
| 2yic_A | 868 | 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 | 100.0 | |
| 2xt6_A | 1113 | 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET | 100.0 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 99.98 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 99.96 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 99.95 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 99.95 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 99.95 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 99.94 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 99.94 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 99.94 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 99.94 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 99.94 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 99.94 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 99.93 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 99.93 | |
| 2qtc_A | 886 | Pyruvate dehydrogenase E1 component; thiamin dipho | 99.92 | |
| 3ahc_A | 845 | Phosphoketolase, xylulose 5-phosphate/fructose 6-p | 99.76 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 99.68 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 99.67 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 99.65 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 99.65 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 99.64 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 99.64 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 99.63 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 99.62 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 99.6 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 99.6 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 99.59 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 99.59 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 99.59 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 99.58 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 99.58 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 99.57 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 99.57 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 99.57 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 99.56 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 99.51 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 99.5 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 99.44 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, | 98.78 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 93.73 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 93.68 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 93.64 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 93.42 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 93.41 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 92.44 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 92.38 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 92.28 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 92.15 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 92.06 | |
| 1yd7_A | 395 | 2-keto acid:ferredoxin oxidoreductase subunit alph | 91.58 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 91.47 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 91.42 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 91.3 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 91.23 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 91.06 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 90.18 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 90.1 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 89.59 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 89.33 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 89.1 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 88.86 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 88.2 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 88.07 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 88.0 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 87.53 | |
| 2ozl_B | 341 | PDHE1-B, pyruvate dehydrogenase E1 component subun | 86.76 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 86.73 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 86.65 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 86.41 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 86.38 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 85.83 | |
| 1qs0_B | 338 | 2-oxoisovalerate dehydrogenase beta-subunit; heter | 85.41 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 84.67 | |
| 1ik6_A | 369 | Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o | 83.11 | |
| 1umd_B | 324 | E1-beta, 2-OXO acid dehydrogenase beta subunit; al | 81.89 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 81.79 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 81.22 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 80.08 |
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-66 Score=523.37 Aligned_cols=285 Identities=48% Similarity=0.841 Sum_probs=274.5
Q ss_pred cccccCCCCccCccccccccCCCCCCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 017890 80 QVLDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159 (364)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~ 159 (364)
..++|||++++||++|+|++|.....+|+|||||++|+++++...+.+++|+++++|+.|+++|.||+++.++++||||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~ 84 (400)
T 2bfd_A 5 DKPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRIS 84 (400)
T ss_dssp -CCCCTTCCCCCCSSCCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred cCCCCCCCCcccccceeeccCcccCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 47899999999999999999988889999999999999998876789999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCc
Q 017890 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPI 239 (364)
Q Consensus 160 f~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~L 239 (364)
||+++.||||+++|++.+|+++|+|+++||+|++++++|++++++|.+++++.+++++|+++++|++.++.++.+.+|+|
T Consensus 85 ~~~~~~GqEa~~vg~~~al~~~D~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~l 164 (400)
T 2bfd_A 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPL 164 (400)
T ss_dssp CCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSST
T ss_pred eeecCCChHHHHHHHHHhcCCCCEEEecCcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred ccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHh
Q 017890 240 ATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGR 319 (364)
Q Consensus 240 G~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~ 319 (364)
|+++|+|+|+|+|.|+++++++|||++|||+++||.+||+||+|+.++||+||||+||+|+++++...+....+++++++
T Consensus 165 G~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~ 244 (400)
T 2bfd_A 165 ATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGP 244 (400)
T ss_dssp TTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTG
T ss_pred cccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888889999999
Q ss_pred hcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 320 AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 320 a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
+|||++++|||||+++|++|+++|++++|++++|+|||++|||++
T Consensus 245 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~ 289 (400)
T 2bfd_A 245 GYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIG 289 (400)
T ss_dssp GGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC
T ss_pred HcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeC
Confidence 999999999999999999999999999999899999999999974
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-59 Score=469.58 Aligned_cols=259 Identities=38% Similarity=0.530 Sum_probs=247.8
Q ss_pred CCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcCCCcEE
Q 017890 105 RVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFI 184 (364)
Q Consensus 105 ~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~~~D~v 184 (364)
.+|+|||||++|+++++ ..+.+++|+++++|+.|+++|.||+++.++|+||||+||+++.||||+++|++.+|+++|+|
T Consensus 50 ~~~~~~~ld~~g~~~~~-~~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al~~~D~v 128 (407)
T 1qs0_A 50 SYSLVRVLDEQGDAQGP-WAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMC 128 (407)
T ss_dssp HTSCBCCBCTTSCBCSG-GGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEE
T ss_pred CCCeEEEECCCCCCCCc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhcCCCCEE
Confidence 36889999999999875 35789999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEE
Q 017890 185 LPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVA 264 (364)
Q Consensus 185 ~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~ 264 (364)
+++||+|++.+++|+++.++|.+++|+..|.++|+++++|++..+.++++.+|+||+++|+|+|+|+|.|+++++++|||
T Consensus 129 ~~~yR~~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~ 208 (407)
T 1qs0_A 129 FPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASA 208 (407)
T ss_dssp ECCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred EecccchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999999999999988999999999987789999999999999999999999999999999999
Q ss_pred EeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccccccccccc-CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHH
Q 017890 265 YTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQF-RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAA 343 (364)
Q Consensus 265 ~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~-~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A 343 (364)
++|||+++||.+||+||+|+.|++|+||||+||+|+++++...+. ...+++++|++|||++++|||+|+++|++++++|
T Consensus 209 i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A 288 (407)
T 1qs0_A 209 WIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWA 288 (407)
T ss_dssp EEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHH
T ss_pred EECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887666 5679999999999999999999999999999999
Q ss_pred HHHhhcCCCcEEEEEEeeccC
Q 017890 344 REMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 344 ~~~ar~~~~P~LIea~T~R~~ 364 (364)
++++|++++|+|||++|||.+
T Consensus 289 ~~~ar~~~gP~lIe~~t~R~~ 309 (407)
T 1qs0_A 289 AERARRGLGPSLIEWVTYRAG 309 (407)
T ss_dssp HHHHHTTSCCEEEEEECCCCS
T ss_pred HHHHHhcCCCEEEEEEeeccC
Confidence 999999999999999999974
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-57 Score=450.68 Aligned_cols=252 Identities=39% Similarity=0.597 Sum_probs=238.1
Q ss_pred CCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcCCCcE
Q 017890 104 KRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDF 183 (364)
Q Consensus 104 ~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~~~D~ 183 (364)
..+|+|||||++|+++++...+.+++++++++|+.|+++|.||+++.++++||||+||+++.||||+++|++.+|+++|+
T Consensus 18 ~~~~~~~~l~~~g~~~~~~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~~~D~ 97 (368)
T 1w85_A 18 EQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDF 97 (368)
T ss_dssp HTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCE
T ss_pred CCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcCCcCE
Confidence 46799999999999988766678999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEE
Q 017890 184 ILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263 (364)
Q Consensus 184 v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv 263 (364)
|+++||+|++++.+|.++.++|.+++|+.+ |+.| | .+.++.+.+|+||+++|+|+|+|+|.|+++++++||
T Consensus 98 v~~~~R~~~~~~~~G~~~~~~~~el~G~~~----G~~~--h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv 168 (368)
T 1w85_A 98 ILPGYRDVPQIIWHGLPLYQAFLFSRGHFH----GNQI--P---EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAI 168 (368)
T ss_dssp EECCSSCHHHHHHTTCCHHHHHHHHHTCGG----GGCC--C---TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred EEecchhHHHHHhcCCCHHHHHHHHCCCCC----CCCC--C---cccccCCCccccCccccHHHHHHHHhHhhCCCCeEE
Confidence 999999999999999999999999999754 5555 4 346788899999999999999999999999999999
Q ss_pred EEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHH
Q 017890 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAA 343 (364)
Q Consensus 264 ~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A 343 (364)
|++|||++++|.+||+||+|+.+++|+||||+||+|+++++...+....+++++|++|||++++|||||+++|++|+++|
T Consensus 169 ~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A 248 (368)
T 1w85_A 169 TYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAA 248 (368)
T ss_dssp EEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHH
T ss_pred EEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888777789999999999999999999999999999999
Q ss_pred HHHhhcCCCcEEEEEEeeccC
Q 017890 344 REMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 344 ~~~ar~~~~P~LIea~T~R~~ 364 (364)
++++|++++|+|||++|||.+
T Consensus 249 ~~~~r~~~gP~lIe~~t~r~~ 269 (368)
T 1w85_A 249 RERAINGEGPTLIETLCFRYG 269 (368)
T ss_dssp HHHHHTTSCCEEEEEECCCSS
T ss_pred HHHHHhcCCCEEEEEEeeccC
Confidence 999999999999999999974
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-55 Score=432.07 Aligned_cols=260 Identities=39% Similarity=0.555 Sum_probs=249.0
Q ss_pred CCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcCCC-c
Q 017890 104 KRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSAD-D 182 (364)
Q Consensus 104 ~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~~~-D 182 (364)
..+|+|||||++|+++++ ..+.+++++++++|+.|+++|.||.++..++++|+++|++++.|+|+++++...+|+++ |
T Consensus 11 ~~~~~~~~l~~~g~~~~~-~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD 89 (367)
T 1umd_A 11 FTEEPIRLIGEEGEWLGD-FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFD 89 (367)
T ss_dssp SCSSCBCCBCTTSCBCCS-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTS
T ss_pred CCCCeEEEECCCCCCCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCc
Confidence 467999999999999887 56789999999999999999999999999999999999999999999999999999998 9
Q ss_pred EEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeE
Q 017890 183 FILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACA 262 (364)
Q Consensus 183 ~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~v 262 (364)
+|+++||++++++.+|++++++|.+++++.+++++|+++++|+++++.++.+.+|++|+++|+|+|+|+|.|+.+++++|
T Consensus 90 ~i~~s~r~~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~v 169 (367)
T 1umd_A 90 WVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVA 169 (367)
T ss_dssp EEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCE
T ss_pred EEEeCcHHHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeE
Confidence 99999999999999999999999999999999999999999998877888889999999999999999999999999999
Q ss_pred EEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHH
Q 017890 263 VAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQA 342 (364)
Q Consensus 263 v~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~ 342 (364)
||++|||++++|.+||||++|+.+++|+||||+||+|+++++...+....++++++++|||++++|||+|+++|++|+++
T Consensus 170 v~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~ 249 (367)
T 1umd_A 170 VCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKE 249 (367)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHH
T ss_pred EEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887777778999999999999999999999999999999
Q ss_pred HHHHhhcCCCcEEEEEEeeccC
Q 017890 343 AREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 343 A~~~ar~~~~P~LIea~T~R~~ 364 (364)
|++++++.++|+|||++|||.+
T Consensus 250 A~~~a~~~~gP~lIe~~t~r~~ 271 (367)
T 1umd_A 250 AVERARRGEGPSLVELRVYRYG 271 (367)
T ss_dssp HHHHHHTTCCCEEEEEECCCCS
T ss_pred HHHHHHhcCCCEEEEEEeecCC
Confidence 9999999999999999999963
|
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-55 Score=433.79 Aligned_cols=239 Identities=26% Similarity=0.403 Sum_probs=225.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCC
Q 017890 122 SDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYT 200 (364)
Q Consensus 122 ~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri-~f~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~ 200 (364)
...+.+++|+++++|+.|+++|.||+++.++||||+| +||+++.||||+++|+.++|+++|+|+++||+|++++++|++
T Consensus 26 ~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~~~yR~~~~~~~~G~~ 105 (365)
T 2ozl_A 26 PVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLS 105 (365)
T ss_dssp CSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCC
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEehHHHHHHHHHhcCCC
Confidence 3456799999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHH
Q 017890 201 LQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAAL 280 (364)
Q Consensus 201 ~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EAL 280 (364)
++++|.+++|+.+++++|++.++|+.+ .++.+.+|+||+++|+|+|+|+|.|+++++++|||++|||++++|.+||+|
T Consensus 106 ~~~i~~e~~g~~~g~~~g~gg~~H~~~--~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Eal 183 (365)
T 2ozl_A 106 VREILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAY 183 (365)
T ss_dssp HHHHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCCCcCc--cccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHH
Confidence 999999999999998888888889854 578888899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 281 NFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 281 n~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
|+|+.|++|+||||+||+|+++++...+....++++ ++||+++++|||||+++|++++++|++++|++++|+|||++|
T Consensus 184 n~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t 261 (365)
T 2ozl_A 184 NMAALWKLPCIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQT 261 (365)
T ss_dssp HHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred HHHHHHCcCEEEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999999999999999999998777766777877 589999999999999999999999999999999999999999
Q ss_pred eccC
Q 017890 361 NFLW 364 (364)
Q Consensus 361 ~R~~ 364 (364)
||.+
T Consensus 262 ~R~~ 265 (365)
T 2ozl_A 262 YRYH 265 (365)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 9974
|
| >2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-45 Score=395.06 Aligned_cols=256 Identities=14% Similarity=0.114 Sum_probs=213.0
Q ss_pred CCeeEEecCCCC-cccC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC--
Q 017890 106 VPCFRVLDDNGE-LIKG---SDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-- 179 (364)
Q Consensus 106 ~~~~rv~~~~g~-~~~~---~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-- 179 (364)
++..+|+|.+|+ .+.+ ...+.+++|+++++|+.|+++|.||+++.+++++|+. .+..|||++++|+..+++
T Consensus 170 ~e~~~i~~~~~~~w~~~~~e~~~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkr---f~~~G~Ea~i~g~~~~~~~a 246 (933)
T 2jgd_A 170 AEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKR---FSLEGGDALIPMLKEMIRHA 246 (933)
T ss_dssp EECSSCCCHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--C---CCCTTCTTHHHHHHHHHHHH
T ss_pred ceeeecCCHHHhHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCCchHHHHHHHHHHHHH
Confidence 467899999998 3322 1146899999999999999999999999999999972 246899999999665554
Q ss_pred ----CCcEEEc-cCCchhHHHh--cCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcc----------cccccCCCcccc
Q 017890 180 ----ADDFILP-QYREPGVLLW--RGYTLQQFANQVFANKADDGKGRQMPIHYGSKKL----------NYITISSPIATQ 242 (364)
Q Consensus 180 ----~~D~v~~-~yR~~g~ll~--rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~----------~~~~~sg~LG~~ 242 (364)
++|+|++ +||+|+++|+ +|++++++|++|+|+.++.+.|+++++|++.... ++.+++|++|++
T Consensus 247 ~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~ 326 (933)
T 2jgd_A 247 GNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIV 326 (933)
T ss_dssp HTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCH
T ss_pred hhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccc
Confidence 7999996 8999999999 9999999999999998887778889999886442 235778999999
Q ss_pred hhHHHHHHHHhhhcc-----CCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCC---EEEEEEcCCccccc-ccccccCCc
Q 017890 243 LPQAVGVAYSLKMEK-----KDACAVAYTGDGGT-SEGDFHAALNFAAVMEAP---VVFICRNNGWAIST-NISEQFRSD 312 (364)
Q Consensus 243 lp~AvG~A~A~k~~~-----~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LP---vIfVV~NNg~ais~-~~~~~~~~~ 312 (364)
+|+|+|+|+|.|+++ .+.++||++|||++ ++|.+||+||+|+.+++| +||||+||+|+|++ ++.++....
T Consensus 327 ~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~~ 406 (933)
T 2jgd_A 327 SPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTP 406 (933)
T ss_dssp HHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------
T ss_pred cCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccch
Confidence 999999999999874 67899999999998 899999999999999999 99999999999999 888777778
Q ss_pred cHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 313 GIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 313 ~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
++++++++|||++++|||||+++|++++++|++++|++++|+|||++|||.+
T Consensus 407 ~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~ 458 (933)
T 2jgd_A 407 YCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRH 458 (933)
T ss_dssp CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_pred hHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeec
Confidence 8999999999999999999999999999999999999999999999999974
|
| >2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-45 Score=394.41 Aligned_cols=255 Identities=15% Similarity=0.140 Sum_probs=215.8
Q ss_pred CCeeEEecCCCC-cc----cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhc--
Q 017890 106 VPCFRVLDDNGE-LI----KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAAL-- 178 (364)
Q Consensus 106 ~~~~rv~~~~g~-~~----~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL-- 178 (364)
++...|.|.+++ .+ +... +.+++|+++++|+.|+++|.||+++.+++++|++. +..||||+++|+..+|
T Consensus 90 ~e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~---g~~G~Ea~~~g~~~~l~~ 165 (868)
T 2yic_A 90 VEYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRF---SLEGAETVIPMMDAVIDQ 165 (868)
T ss_dssp EECTTCSCHHHHHHHHHHHSSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGG---CCTTCTTHHHHHHHHHHH
T ss_pred cceeccCChHHhHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---cCCChHHHHHHHHHHHHH
Confidence 355567777776 22 2122 68999999999999999999999999999988752 3499999999998764
Q ss_pred ----CCCcEEEc-cCCchhHHHh--cCCCHHHHHHHHhcCCCCC-C-CCCCCccccCCCc------------ccccccCC
Q 017890 179 ----SADDFILP-QYREPGVLLW--RGYTLQQFANQVFANKADD-G-KGRQMPIHYGSKK------------LNYITISS 237 (364)
Q Consensus 179 ----~~~D~v~~-~yR~~g~ll~--rG~~~~~~l~~~~g~~~~~-~-~Gr~mp~H~~~~~------------~~~~~~sg 237 (364)
+++|+|++ +||+|++.|+ +|++++++|++++|+.+++ + .|+++++|++... .++.+++|
T Consensus 166 ~~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s 245 (868)
T 2yic_A 166 CAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPS 245 (868)
T ss_dssp HHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCS
T ss_pred hhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCc
Confidence 58999998 8999999999 9999999999999998876 2 4678899987532 34667889
Q ss_pred CcccchhHHHHHHHHhhhcc----------CCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCC---EEEEEEcCCccccc
Q 017890 238 PIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGT-SEGDFHAALNFAAVMEAP---VVFICRNNGWAIST 303 (364)
Q Consensus 238 ~LG~~lp~AvG~A~A~k~~~----------~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LP---vIfVV~NNg~ais~ 303 (364)
+||+++|+|+|+|+|.|+++ .+.++||++|||++ +||.+||+||+|+.+++| +||||+||+|++++
T Consensus 246 ~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~st 325 (868)
T 2yic_A 246 HLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTT 325 (868)
T ss_dssp STTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTB
T ss_pred cccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCccccc
Confidence 99999999999999999864 56799999999996 899999999999999998 99999999999999
Q ss_pred ccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 304 NISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 304 ~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
+...+.+..++.+++++|||++++|||||+++|++|+++|++++|++++|+|||++|||.+
T Consensus 326 ~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~ 386 (868)
T 2yic_A 326 APTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRR 386 (868)
T ss_dssp CHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCS
T ss_pred CccccccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCC
Confidence 8765656677889999999999999999999999999999999999999999999999974
|
| >2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-44 Score=394.55 Aligned_cols=254 Identities=15% Similarity=0.130 Sum_probs=214.4
Q ss_pred CeeEEecCCCC-cc----cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhh----
Q 017890 107 PCFRVLDDNGE-LI----KGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAA---- 177 (364)
Q Consensus 107 ~~~rv~~~~g~-~~----~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~a---- 177 (364)
+...|.|.+++ .+ +... +.+++|+++++|+.|+++|.||+++.+++++|++. +..||||+++|+..+
T Consensus 336 e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~---g~~GqEa~~~g~~~~l~~~ 411 (1113)
T 2xt6_A 336 EYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRF---SLEGAETVIPMMDAVIDQC 411 (1113)
T ss_dssp ECTTCSCHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGG---CCTTCTTHHHHHHHHHHHH
T ss_pred ceeccCCHHHhHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---cCCChHHHHHHHHHHHHHh
Confidence 44567787776 22 1122 68999999999999999999999999999988752 239999999999777
Q ss_pred --cCCCcEEEc-cCCchhHHHh--cCCCHHHHHHHHhcCCCCC-C-CCCCCccccCCCc------------ccccccCCC
Q 017890 178 --LSADDFILP-QYREPGVLLW--RGYTLQQFANQVFANKADD-G-KGRQMPIHYGSKK------------LNYITISSP 238 (364)
Q Consensus 178 --L~~~D~v~~-~yR~~g~ll~--rG~~~~~~l~~~~g~~~~~-~-~Gr~mp~H~~~~~------------~~~~~~sg~ 238 (364)
|+++|+|++ +||+|++.|+ +|++++++|++++|+.+++ + .|+++++|++... .++.+++|+
T Consensus 412 ~~l~~~D~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~ 491 (1113)
T 2xt6_A 412 AEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSH 491 (1113)
T ss_dssp HHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSS
T ss_pred hhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCcc
Confidence 558999998 7999999999 9999999999999998876 2 4678899987532 345678899
Q ss_pred cccchhHHHHHHHHhhhcc----------CCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCC---EEEEEEcCCcccccc
Q 017890 239 IATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGT-SEGDFHAALNFAAVMEAP---VVFICRNNGWAISTN 304 (364)
Q Consensus 239 LG~~lp~AvG~A~A~k~~~----------~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LP---vIfVV~NNg~ais~~ 304 (364)
||+++|+|+|+|+|.|+++ .+.++||++|||++ +||.+||+||+|+.+++| +||||+||+|+++++
T Consensus 492 Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~ 571 (1113)
T 2xt6_A 492 LEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTA 571 (1113)
T ss_dssp TTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBC
T ss_pred ccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccC
Confidence 9999999999999999865 56899999999995 899999999999999998 999999999999998
Q ss_pred cccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 305 ISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 305 ~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
...+.+..++.+++++|||++++|||||+++|++|+++|++++|++++|+|||++|||.+
T Consensus 572 ~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~ 631 (1113)
T 2xt6_A 572 PTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRR 631 (1113)
T ss_dssp HHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCS
T ss_pred ccccccccCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccC
Confidence 665555566789999999999999999999999999999999999999999999999974
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-32 Score=289.34 Aligned_cols=226 Identities=17% Similarity=0.193 Sum_probs=173.1
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC-CCcEEE--ccCCchhHH
Q 017890 118 LIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFIL--PQYREPGVL 194 (364)
Q Consensus 118 ~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~--~~yR~~g~l 194 (364)
+-.+.+.++++.+++.++|+.| |.++..+. +++ .++++++.|+|++.+++..+++ ++|+++ ..||+++++
T Consensus 14 i~~p~d~~~l~~~~l~~l~~~i---R~~~~~~~--~~~--~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y~~~ 86 (621)
T 2o1s_A 14 VDSTQELRLLPKESLPKLCDEL---RRYLLDSV--SRS--SGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHK 86 (621)
T ss_dssp CSSHHHHTTSCGGGHHHHHHHH---HHHHHHHS--CGG--GCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTTCHHHH
T ss_pred cCChHHhhhCCHHHHHHHHHHH---HHHHHHHH--hhc--CCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchHHHHHH
Confidence 3334455689999999999987 66554444 232 3688899999999999999999 899999 679999999
Q ss_pred HhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcccc
Q 017890 195 LWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 273 (364)
Q Consensus 195 l~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~e 273 (364)
+.+|. .++ +..+.. .|+ ++.|+...+ .+....+|+||+++|+|+|+|+|.|+++++++|||++|||++++
T Consensus 87 ~l~G~-~~~-~~~~r~------~~g-~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~ 157 (621)
T 2o1s_A 87 ILTGR-RDK-IGTIRQ------KGG-LHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITA 157 (621)
T ss_dssp HTTTT-GGG-GGGTTS------TTS-CCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGS
T ss_pred HHhCC-Hhh-hhcccc------cCC-CCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhc
Confidence 99998 222 222221 222 345655433 33445689999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCC----------------------------------ccH-----
Q 017890 274 GDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRS----------------------------------DGI----- 314 (364)
Q Consensus 274 G~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~----------------------------------~~i----- 314 (364)
|.+||+||+|+.+++|+||||+||+|++++++..+... .++
T Consensus 158 G~~~EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~ 237 (621)
T 2o1s_A 158 GMAFEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMV 237 (621)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEECC-------------------------------------------------------
T ss_pred cHHHHHHHHHHhhCCCEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999876542210 011
Q ss_pred --HHHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 315 --VVKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 315 --a~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
..++++|||+++ +|||||++++++++++|++ .++|+|||++|+|-
T Consensus 238 ~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~gP~lI~v~t~kg 285 (621)
T 2o1s_A 238 VPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRD----LKGPQFLHIMTKKG 285 (621)
T ss_dssp -CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH----SCSEEEEEEECCCT
T ss_pred ChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHH----cCCCEEEEEEEecc
Confidence 478999999999 9999999999999998876 57999999999874
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-30 Score=272.36 Aligned_cols=222 Identities=18% Similarity=0.181 Sum_probs=168.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC-CCcEEEccCCchh---HHHh
Q 017890 121 GSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-ADDFILPQYREPG---VLLW 196 (364)
Q Consensus 121 ~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-~~D~v~~~yR~~g---~ll~ 196 (364)
+.+.+.++.+++.++|+.| |.+...+.. + ..++++++.|+-.+.+++...++ ++|+++.. |+|+ +.++
T Consensus 19 p~d~~~l~~~~l~~l~~~i---R~~~~~~~~--~--~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~GH~~y~~~~l 90 (629)
T 2o1x_A 19 PKDLKRLSREQLPALTEEL---RGEIVRVCS--R--GGLHLASSLGAVDIITALHYVLDSPRDRILFD-VGHQAYAHKIL 90 (629)
T ss_dssp HHHHTTSCGGGHHHHHHHH---HHHHHHHHT--T--SSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-SSTTCHHHHHT
T ss_pred hhhhhhCCHHHHHHHHHHH---HHHHHHHHH--h--cCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-CchHHHHHHHH
Confidence 3445679999999999998 655433332 2 24688889999555555444458 89999999 9996 5667
Q ss_pred cCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcccccc
Q 017890 197 RGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGD 275 (364)
Q Consensus 197 rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~ 275 (364)
.|. .+.+..+ .+ .++ +++|+..++ .+..+.+|+||+++|+|+|+|+|.|+++++++|||++|||++++|.
T Consensus 91 ~G~--~~~~~~~-r~-----~~g-~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~ 161 (629)
T 2o1x_A 91 TGR--RDQMADI-KK-----EGG-ISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGM 161 (629)
T ss_dssp TTT--GGGGGGT-TS-----TTS-CCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHH
T ss_pred hCc--HhHHhCc-cc-----CCC-CCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccH
Confidence 776 1112221 11 111 234543322 3556778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcccccccccccC--------------------------C---------cc-H-----
Q 017890 276 FHAALNFAAVMEAPVVFICRNNGWAISTNISEQFR--------------------------S---------DG-I----- 314 (364)
Q Consensus 276 ~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~--------------------------~---------~~-i----- 314 (364)
+||+||+|+.+++|+||||+||+|+|++++..+.. . .+ +
T Consensus 162 ~~EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~ 241 (629)
T 2o1x_A 162 ALAALNTIGDMGRKMLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFD 241 (629)
T ss_dssp HHHHHHHHHHHCCSEEEEEEECSBSSSBCCSSHHHHC-------------------------------------------
T ss_pred HHHHHHHHHhhCCCEEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999887652210 0 02 3
Q ss_pred -H--HHHhhcCeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 315 -V--VKGRAYGIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 315 -a--~~a~a~G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
. +++++|||+++ +|||||++++++++++|++ .++|+|||++|++-
T Consensus 242 p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~~P~lI~v~t~kg 290 (629)
T 2o1x_A 242 PASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVD----LDGPTILHIVTTKG 290 (629)
T ss_dssp --CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTT----SSSEEEEEEECCTT
T ss_pred cccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHh----cCCCEEEEEEEecC
Confidence 3 78999999999 9999999999999988754 57999999999863
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-28 Score=255.75 Aligned_cols=209 Identities=18% Similarity=0.231 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC---------CCcEEEcc--CCc---hhHHHhcCC--CHHHHH
Q 017890 142 LQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQ--YRE---PGVLLWRGY--TLQQFA 205 (364)
Q Consensus 142 ~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~---------~~D~v~~~--yR~---~g~ll~rG~--~~~~~l 205 (364)
+|.+=-.+......|.++-.++. -|.+.+.....|+ +.|.++.+ |-. .+++...|+ +.++ |
T Consensus 30 iR~~~~~~v~~a~sGH~g~~ls~--a~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~~~~-l 106 (700)
T 3rim_A 30 IRVLAADAVQKVGNGHPGTAMSL--APLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYLGGFGLELSD-I 106 (700)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHT--HHHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHHTTSSCCHHH-H
T ss_pred HHHHHHHHHHHhCCCCCCccHHH--HHHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHHhCCCCCHHH-H
Confidence 44333223333345665533333 3344433334565 35866653 444 234555775 4444 5
Q ss_pred HHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHHHhhhc-------------cCCCeEEEEeCCCcc
Q 017890 206 NQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSLKME-------------KKDACAVAYTGDGGT 271 (364)
Q Consensus 206 ~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~A~k~~-------------~~~~~vv~~~GDGa~ 271 (364)
..++. .|+.+|+|+... .+++...+|+||+++|+|+|+|+|.|+. +.+++|+|++|||++
T Consensus 107 ~~fr~------~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l 180 (700)
T 3rim_A 107 ESLRT------WGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDI 180 (700)
T ss_dssp TTTTS------TTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHH
T ss_pred HHhhc------CCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCccc
Confidence 55542 577889999864 4688888999999999999999999974 467899999999999
Q ss_pred ccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEE-eCCCHHHHHHHHHHHHHHhhc
Q 017890 272 SEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRV-DGNDALAVYTAVQAAREMAIS 349 (364)
Q Consensus 272 ~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~V-DGnD~~av~~a~~~A~~~ar~ 349 (364)
+||.+|||+++|+.++|| +|+||+||+|+|++++.... .+++.+++++|||++++| ||||+++|++|+++|++ .
T Consensus 181 ~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~~-~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~---~ 256 (700)
T 3rim_A 181 EEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIAL-CEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQA---V 256 (700)
T ss_dssp HSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH---C
T ss_pred ccChHHHHHHHHHHcCCCcEEEEEECCCcccccchhhcc-chhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHH---c
Confidence 999999999999999995 99999999999999988654 688999999999999999 99999999999999875 3
Q ss_pred CCCcEEEEEEeecc
Q 017890 350 EKRPVLVEVRLNFL 363 (364)
Q Consensus 350 ~~~P~LIea~T~R~ 363 (364)
.++|+||+|+|+|-
T Consensus 257 ~~~P~lI~~~T~kG 270 (700)
T 3rim_A 257 TDRPSFIALRTVIG 270 (700)
T ss_dssp CSSCEEEEEECCTT
T ss_pred CCCCEEEEEEEEee
Confidence 68999999999974
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-27 Score=248.05 Aligned_cols=204 Identities=18% Similarity=0.195 Sum_probs=158.7
Q ss_pred HHHHHhcCcccccccCCchhHHHHHHHhhcCC---------CcEEEcc--CCc---hhHHHhcCC-CHHHHHHHHhcCCC
Q 017890 149 LYEAQRQGRFSFYLTTIGEEAINIGSAAALSA---------DDFILPQ--YRE---PGVLLWRGY-TLQQFANQVFANKA 213 (364)
Q Consensus 149 ~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~~---------~D~v~~~--yR~---~g~ll~rG~-~~~~~l~~~~g~~~ 213 (364)
+......|.++-.+++ -|.+.+.....|+. .|.++.+ |-. .+++...|+ ...+-|..+..
T Consensus 20 ~v~~a~~GH~g~~ls~--a~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l~~~r~--- 94 (673)
T 1r9j_A 20 IVQGGKSGHPGTPMGM--APMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNLTMDDLKGFRQ--- 94 (673)
T ss_dssp HHHHHTCSCCHHHHHT--HHHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCCHHHHHTTTS---
T ss_pred HHHHcCCCCcchhHHH--HHHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHHHHcCCCCCHHHHHhhcc---
Confidence 3333356766544443 34444444434442 3655543 333 234455687 44455555542
Q ss_pred CCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhcc----------CCCeEEEEeCCCccccccHHHHHHH
Q 017890 214 DDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGTSEGDFHAALNF 282 (364)
Q Consensus 214 ~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~~----------~~~~vv~~~GDGa~~eG~~~EALn~ 282 (364)
.|+.+|+|+.... +++...+|+||+++|.|+|+|+|.|+.+ .+++|+|++|||+++||.+|||+++
T Consensus 95 ---~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~ 171 (673)
T 1r9j_A 95 ---DGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSL 171 (673)
T ss_dssp ---TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHH
T ss_pred ---CCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHH
Confidence 4778899998653 6788889999999999999999998765 5889999999999999999999999
Q ss_pred HHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcCeEEE-EEeC-CCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 283 AAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSI-RVDG-NDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 283 Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~-~VDG-nD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
|++++|| +|+||+||+|+|++++..+. .+++.+++++|||+++ +||| ||++++++|+++|++ ..++|+||+++
T Consensus 172 A~~~~L~~li~i~d~N~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~---~~~~P~lI~~~ 247 (673)
T 1r9j_A 172 AGHLALEKLIVIYDSNYISIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA---TKGKPKMIVQT 247 (673)
T ss_dssp HHHHTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEE
T ss_pred HHHhCCCcEEEEEECCCCccccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHH---cCCCCEEEEEe
Confidence 9999996 99999999999999988776 6899999999999999 8999 999999999998875 36799999999
Q ss_pred eeccC
Q 017890 360 LNFLW 364 (364)
Q Consensus 360 T~R~~ 364 (364)
|+|-+
T Consensus 248 T~kg~ 252 (673)
T 1r9j_A 248 TTIGF 252 (673)
T ss_dssp CCTTT
T ss_pred ccccc
Confidence 99853
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=244.10 Aligned_cols=224 Identities=18% Similarity=0.139 Sum_probs=164.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC---------CCcEEEcc--CCc---h
Q 017890 126 QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS---------ADDFILPQ--YRE---P 191 (364)
Q Consensus 126 ~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~---------~~D~v~~~--yR~---~ 191 (364)
.+++....+|=+....+|.+=-.+......|.++--++. -|.+.+.....|+ +.|.++.+ |-. .
T Consensus 4 ~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~--~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ly 81 (616)
T 3mos_A 4 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSA--AEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILY 81 (616)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTT--HHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhH--HHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHHH
Confidence 566666666655555666544333333334554422222 3333322223342 25876654 333 1
Q ss_pred hHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccC-CCeEEEEeCCCc
Q 017890 192 GVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKK-DACAVAYTGDGG 270 (364)
Q Consensus 192 g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~-~~~vv~~~GDGa 270 (364)
+++...|+...+.|..++ ..|+.+++|+....+++...+|+||+++|+|+|+|+|.|+.+. +++|||++|||+
T Consensus 82 ~~~~l~G~~~~~~l~~~r------~~~s~l~ghp~~~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~ 155 (616)
T 3mos_A 82 AVWAEAGFLAEAELLNLR------KISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGE 155 (616)
T ss_dssp HHHHHTTSSCGGGGGGTT------CTTCSCCSSCCTTSTTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGG
T ss_pred HHHHHcCCCCHHHHHHhc------cCCCCCCCCCCCCCCcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 244557863334444543 2577899999876677777899999999999999999986554 589999999999
Q ss_pred cccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhc
Q 017890 271 TSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAIS 349 (364)
Q Consensus 271 ~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~ 349 (364)
+++|.+||+|++|+.++|| +|+|++||+|++++++......+++.+++++|||++++|||||++++.++++++
T Consensus 156 ~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~------ 229 (616)
T 3mos_A 156 LSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA------ 229 (616)
T ss_dssp GGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC------
T ss_pred cccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc------
Confidence 9999999999999999996 789999999999998877776678999999999999999999999999998543
Q ss_pred CCCcEEEEEEeecc
Q 017890 350 EKRPVLVEVRLNFL 363 (364)
Q Consensus 350 ~~~P~LIea~T~R~ 363 (364)
.++|+|||++|+|-
T Consensus 230 ~~~P~lI~v~T~kg 243 (616)
T 3mos_A 230 KHQPTAIIAKTFKG 243 (616)
T ss_dssp CSSCEEEEEECCTT
T ss_pred CCCCEEEEEEEecc
Confidence 47999999999985
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=244.67 Aligned_cols=173 Identities=19% Similarity=0.277 Sum_probs=143.3
Q ss_pred CCcEEEcc--CCc---hhHHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHh
Q 017890 180 ADDFILPQ--YRE---PGVLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSL 253 (364)
Q Consensus 180 ~~D~v~~~--yR~---~g~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~ 253 (364)
+.|.++.+ |-. .++++..|+ ...+-|.+++. .|+..+.|+....+++...+|+||+++|.|+|+|+|.
T Consensus 57 ~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l~~~r~------~~s~~~ghp~~~~~g~~~~tG~lG~gl~~AvG~AlA~ 130 (632)
T 3l84_A 57 NRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQ------LHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAA 130 (632)
T ss_dssp TSCEEEESSGGGHHHHHHHHHHHTCSCCHHHHTTTTC------TTCSSCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcccHHHHHHHHHhCCCCCHHHHHHHhc------CCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHHH
Confidence 46877664 444 234555675 33333555542 4666788988745688888999999999999999999
Q ss_pred hhccC-------CCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcCeEE
Q 017890 254 KMEKK-------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRS 325 (364)
Q Consensus 254 k~~~~-------~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~ 325 (364)
|+++. +++|||++|||+++||.+||++++|++++|| +|+|++||+|+|++++.... .+++.+++++|||++
T Consensus 131 ~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~ 209 (632)
T 3l84_A 131 KKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAF-NENVKMRFEAQGFEV 209 (632)
T ss_dssp HHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEE
T ss_pred HhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcccccchhhhc-ChhHHHHHHHcCCeE
Confidence 97653 8899999999999999999999999999996 89999999999999887654 578999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 326 IRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 326 ~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
++|||||++++.+|+++|++ .++|+||+++|++-
T Consensus 210 ~~vdGhd~~~l~~al~~A~~----~~~P~lI~v~T~kG 243 (632)
T 3l84_A 210 LSINGHDYEEINKALEQAKK----STKPCLIIAKTTIA 243 (632)
T ss_dssp EEEETTCHHHHHHHHHHHHT----CSSCEEEEEECCTT
T ss_pred EEEeeCCHHHHHHHHHHHHh----CCCCEEEEEeeEee
Confidence 99999999999999988764 68999999999873
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=244.34 Aligned_cols=224 Identities=18% Similarity=0.207 Sum_probs=164.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHH-hhcC---------CCcEEEcc--CCc-
Q 017890 124 FQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSA-AALS---------ADDFILPQ--YRE- 190 (364)
Q Consensus 124 ~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a-~aL~---------~~D~v~~~--yR~- 190 (364)
-..++.++|.++ ...+|.+--.+......|.++- +.|.--+.+..- ..|+ +.|.++.+ |-.
T Consensus 8 ~~~l~~~~l~~~---a~~iR~~~~~~v~~a~~GH~g~---~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~ 81 (675)
T 1itz_A 8 GKAATGELLEKS---VNTIRFLAIDAVEKANSGHPGL---PMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCM 81 (675)
T ss_dssp --CCCHHHHHHH---HHHHHHHHHHHHHHHTCSCCHH---HHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHH
T ss_pred cCCCCHHHHHHH---HHHHHHHHHHHHHHcCCCccCc---cHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHH
Confidence 457888888764 2344543323333334555442 333322322222 1233 23765543 333
Q ss_pred --hhHHHhcCC--CHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhcc--------
Q 017890 191 --PGVLLWRGY--TLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKMEK-------- 257 (364)
Q Consensus 191 --~g~ll~rG~--~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~~-------- 257 (364)
.+++...|+ ...+-|..++. .|+..+.|+...+ +++...+|+||+++|+|+|+|+|.|+.+
T Consensus 82 ~lYa~l~l~G~~~~~~~~l~~~r~------~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~ 155 (675)
T 1itz_A 82 LQYALLHLAGYDSVKEEDLKQFRQ------WGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDS 155 (675)
T ss_dssp HHHHHHHHHTCTTCCHHHHTTTTS------TTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTB
T ss_pred HHHHHHHHcCCCCCCHHHHHhccc------CCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhccccccccc
Confidence 233445676 33344555432 4666789987643 6788889999999999999999998765
Q ss_pred --CCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEE-EEeCC-C
Q 017890 258 --KDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSI-RVDGN-D 332 (364)
Q Consensus 258 --~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~-~VDGn-D 332 (364)
++++|||++|||+++||.+||++++|+.++| |+|+||+||+|+|++++.... ..++.+++++|||+++ +|||| |
T Consensus 156 ~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d 234 (675)
T 1itz_A 156 EIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTG 234 (675)
T ss_dssp CCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTC
T ss_pred CCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCC
Confidence 6889999999999999999999999999999 799999999999999887765 7889999999999999 99999 9
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 333 ALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 333 ~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
++++++|+++|++ ..++|+||+++|++-
T Consensus 235 ~~~l~~al~~a~~---~~~~P~lI~~~T~kg 262 (675)
T 1itz_A 235 YDDIRAAIKEAKA---VTDKPTLIKVTTTIG 262 (675)
T ss_dssp HHHHHHHHHHHHH---CCSSCEEEEEECCTT
T ss_pred HHHHHHHHHHHHH---CCCCeEEEEEeeecc
Confidence 9999999998875 257999999999974
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=243.71 Aligned_cols=174 Identities=24% Similarity=0.294 Sum_probs=137.7
Q ss_pred CCcEEEcc--CCc---hhHHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHHH
Q 017890 180 ADDFILPQ--YRE---PGVLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYS 252 (364)
Q Consensus 180 ~~D~v~~~--yR~---~g~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~A 252 (364)
+.|.++.+ |-. .+++...|+ ...+.|.+++. .|+..|.|+... .+++...+|+||+++|+|+|+|+|
T Consensus 58 ~rDrfvls~GH~s~~lYa~l~l~G~~~~~~~l~~~r~------~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA 131 (663)
T 3kom_A 58 NRDRFVLSNGHGSMLLYSLLHLTGYDLSIEDIKNFRQ------LHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALG 131 (663)
T ss_dssp TSCEEEECSSSCHHHHHHHHHHHTCSCCHHHHTTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHH
T ss_pred CCCeEEEeCCcccHHHHHHHHHhCCCCCHHHHHhhcc------CCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHh
Confidence 35866654 433 223444675 33344555542 467778898764 367888899999999999999999
Q ss_pred hhhccC----------CCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 253 LKMEKK----------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 253 ~k~~~~----------~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
.|+.+. +++|+|++|||+++||.+|||+++|++++|| +|+|++||+|+|++++.... .+++.+++++|
T Consensus 132 ~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~~~-~~d~~~~~~a~ 210 (663)
T 3kom_A 132 EKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWF-SDNTPERFRAY 210 (663)
T ss_dssp HHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----CGGGTC-CCCHHHHHHHT
T ss_pred HHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCcccccchhhhc-chhHHHHHHHC
Confidence 987653 7899999999999999999999999999996 89999999999999887654 57899999999
Q ss_pred CeEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 322 GIRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 322 G~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
||+++ +|||||++++++|+++|++. .++|+||+++|++-
T Consensus 211 G~~~~~~vdG~d~~~l~~al~~A~~~---~~~P~lI~~~T~kg 250 (663)
T 3kom_A 211 GWHVIENVDGHDFVAIEKAINEAHSQ---QQKPTLICCKTVIG 250 (663)
T ss_dssp TCEEEEEEETTCHHHHHHHHHHHHHC---SSSCEEEEEECCTT
T ss_pred CCeEEEEEcCCCHHHHHHHHHHHHhc---CCCCEEEEEecccc
Confidence 99999 99999999999999887651 57999999999874
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=242.85 Aligned_cols=172 Identities=22% Similarity=0.280 Sum_probs=142.2
Q ss_pred cEEEcc--CCc---hhHHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhh
Q 017890 182 DFILPQ--YRE---PGVLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLK 254 (364)
Q Consensus 182 D~v~~~--yR~---~g~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k 254 (364)
|.++.+ |-. .++++..|+ ...+-|..++. .|+..++|+...+ +++...+|+||+++|+|+|+|+|.|
T Consensus 62 Dr~vls~GH~~~~lYa~l~l~G~~~~~~~l~~~r~------~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~ 135 (651)
T 2e6k_A 62 DRFVLSAGHGSMLLYAVLHLTGYDLPLEELKSFRQ------WGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAER 135 (651)
T ss_dssp CEEEESSGGGHHHHHHHHHHTTCSCCHHHHTTTTS------TTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHH
T ss_pred CeEEEeCcchhHHHHHHHHHhCCCCCHHHHHHhhc------cCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHH
Confidence 765543 433 234445676 33334444432 3556688887543 6788899999999999999999998
Q ss_pred hcc----------CCCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 255 MEK----------KDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 255 ~~~----------~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
+.+ .+++|||++|||+++||.+||++++|+.++|| +|+||+||+|+|++++...+ ..++.+++++|||
T Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~ 214 (651)
T 2e6k_A 136 KLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF-TEDVLARYRAYGW 214 (651)
T ss_dssp HHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGTC-CSCHHHHHHHTTC
T ss_pred hhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCccccccccccc-CccHHHHHHhCCC
Confidence 765 68899999999999999999999999999996 99999999999999988776 6789999999999
Q ss_pred EEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 324 RSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 324 ~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
+++ +|||||++++++|+++|++ .++|+||+++|+|-+
T Consensus 215 ~~~~~vdG~d~~~l~~al~~a~~----~~~P~lI~~~t~kg~ 252 (651)
T 2e6k_A 215 QTLRVEDVNDLEALRKAIKLAKL----DERPTLIAVRSHIGF 252 (651)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHH----SSSCEEEEEECCTTT
T ss_pred eEEEEeCCCCHHHHHHHHHHHHH----CCCCEEEEEEeEecc
Confidence 999 9999999999999999876 579999999999853
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-26 Score=242.41 Aligned_cols=174 Identities=21% Similarity=0.276 Sum_probs=143.8
Q ss_pred CcEEEcc--CCc---hhHHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhh
Q 017890 181 DDFILPQ--YRE---PGVLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLK 254 (364)
Q Consensus 181 ~D~v~~~--yR~---~g~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k 254 (364)
.|.++.+ |-. .++++..|+ ...+-|..++. .|+.+++|+....+++...+|+||+++|+|+|+|+|.+
T Consensus 60 rDr~v~s~GH~~~~lYa~~~l~G~~~~~~~l~~~r~------~g~~~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~ 133 (680)
T 1gpu_A 60 RDRFVLSNGHAVALLYSMLHLTGYDLSIEDLKQFRQ------LGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQA 133 (680)
T ss_dssp CCEEEESSGGGHHHHHHHHHHTTCSCCHHHHTTTTC------TTCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHH
T ss_pred CCEEEEecchHHHHHHHHHHHhCCCCCHHHHHhhcc------cCCCCCCCCCccCCCeeeccccccchHHHHHHHHHHHH
Confidence 5766554 333 234455676 33334444432 46677899987557888999999999999999999998
Q ss_pred hcc----------CCCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 255 MEK----------KDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 255 ~~~----------~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
+.+ .+++|||++|||+++||.+||++++|+.++|| +|+||+||+|+|++++..+. .+++.+++++|||
T Consensus 134 ~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~ 212 (680)
T 1gpu_A 134 NLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEAYGW 212 (680)
T ss_dssp HHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTC
T ss_pred HhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEeccccccc-CccHHHHHHhcCC
Confidence 764 37899999999999999999999999999996 99999999999999887665 5789999999999
Q ss_pred EEE-EEeCC-CHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 324 RSI-RVDGN-DALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 324 ~~~-~VDGn-D~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
+++ +|||| |++++++|+++|++ ..++|+|||++|+|-+
T Consensus 213 ~~~~~vdG~~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~ 252 (680)
T 1gpu_A 213 EVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGY 252 (680)
T ss_dssp EEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTT
T ss_pred eEEEEecCCCCHHHHHHHHHHHHH---CCCCCEEEEEEeeccc
Confidence 999 99999 99999999999876 3579999999999853
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-26 Score=242.70 Aligned_cols=171 Identities=23% Similarity=0.307 Sum_probs=140.1
Q ss_pred CcEEEccCCchhH------HHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHH
Q 017890 181 DDFILPQYREPGV------LLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYS 252 (364)
Q Consensus 181 ~D~v~~~yR~~g~------ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A 252 (364)
.|.++.+ -+|+. +...|+ ...+-|..++. .|+.++.|+.... +++...+|+||+++|.|+|+|+|
T Consensus 98 rDrfvls-~GH~s~~lYa~l~l~G~~~~~~~l~~~r~------~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA 170 (711)
T 3uk1_A 98 RDRFVLS-NGHGSMLLYSLLHLTGYDLPIEELKNFRQ------LHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALG 170 (711)
T ss_dssp CCEEEEC-SGGGHHHHHHHHHHHTCSCCHHHHHTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHH
T ss_pred CCeEEEe-CCcccHHHHHHHHHhCCCCCHHHHHhhcc------ccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHH
Confidence 5866654 24443 445676 34444556542 4667788987543 67888899999999999999999
Q ss_pred hhhccC----------CCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 253 LKMEKK----------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 253 ~k~~~~----------~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
.|+.+. +++|||++|||+++||.+||+|++|+.++|| +|+||+||+|+|++++..+. .+++.+++++|
T Consensus 171 ~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~ 249 (711)
T 3uk1_A 171 EALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWF-HDDTPKRFEAY 249 (711)
T ss_dssp HHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHT
T ss_pred HHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCcccccchhhhc-CCCHHHHHHHc
Confidence 987653 7899999999999999999999999999997 99999999999999887764 57899999999
Q ss_pred CeEEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 322 GIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 322 G~~~~~-VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
||++++ |||||++++++|+++|++ .++|+||+++|+|-
T Consensus 250 G~~~~~~vdG~d~~~l~~Al~~A~~----~~~P~lI~v~T~kG 288 (711)
T 3uk1_A 250 GWNVIPNVNGHDVDAIDAAIAKAKR----SDKPSLICCKTRIG 288 (711)
T ss_dssp TCEEEEEEETTCHHHHHHHHHHHTT----CSSCEEEEEEC---
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEccccc
Confidence 999999 899999999999988754 68999999999874
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=238.05 Aligned_cols=174 Identities=24% Similarity=0.317 Sum_probs=141.3
Q ss_pred CcEEEcc--CCc---hhHHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHh
Q 017890 181 DDFILPQ--YRE---PGVLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSL 253 (364)
Q Consensus 181 ~D~v~~~--yR~---~g~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~ 253 (364)
.|.++.+ |-. .+++...|+ ...+-|..++. .|+..+.|+...+ +++...+|+||+++|.|+|+|+|.
T Consensus 57 rDr~v~s~GH~~~~lYa~~~l~G~~~~~~~l~~~r~------~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~ 130 (669)
T 2r8o_A 57 RDRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQ------LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAE 130 (669)
T ss_dssp CCEEEESSGGGHHHHHHHHHHHTCSCCHHHHTTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCeEEEeCccHHHHHHHHHHHcCCCCCHHHHHHhhc------CCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHH
Confidence 4655443 333 233444565 33344444432 3666688987543 688889999999999999999999
Q ss_pred hhcc----------CCCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhhcC
Q 017890 254 KMEK----------KDACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRAYG 322 (364)
Q Consensus 254 k~~~----------~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G 322 (364)
++.+ .+++|||++|||+++||.+||++++|+.++|| +|+||+||+|+|++++..+. .+++.+++++||
T Consensus 131 ~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G 209 (669)
T 2r8o_A 131 KTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYG 209 (669)
T ss_dssp HHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTT
T ss_pred HHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEecccccccc-CccHHHHHHHCC
Confidence 8654 37899999999999999999999999999996 99999999999999887654 578999999999
Q ss_pred eEEE-EEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 323 IRSI-RVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 323 ~~~~-~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
|+++ +|||||++++++|+++|++ ..++|+||+++|+|-+
T Consensus 210 ~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~ 249 (669)
T 2r8o_A 210 WHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGF 249 (669)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTT
T ss_pred CeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEecc
Confidence 9999 9999999999999999876 3579999999999853
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=237.90 Aligned_cols=173 Identities=28% Similarity=0.390 Sum_probs=141.9
Q ss_pred CCcEEEcc--CCc---hhHHHhcCC--CHHHHHHHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHH
Q 017890 180 ADDFILPQ--YRE---PGVLLWRGY--TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAY 251 (364)
Q Consensus 180 ~~D~v~~~--yR~---~g~ll~rG~--~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~ 251 (364)
+.|.++.+ |-. .+++...|+ +.++ |..++. .|+..|+|+... .+++...+|+||+++|.|+|+|+
T Consensus 82 ~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~-l~~~rq------~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~Al 154 (690)
T 3m49_A 82 NRDRFVLSAGHGSMLLYSLLHLSGYDVTMDD-LKNFRQ------WGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAM 154 (690)
T ss_dssp TSCEEEESSGGGHHHHHHHHHHTTSSCCHHH-HTTTTC------TTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHH
T ss_pred CCCeEEECCccHHHHHHHHHHHHCCCCCHHH-HHhhcc------CCCCCCCCCCCCCCCccccCCccccccHHHHHHHHH
Confidence 46866654 333 134445675 4544 555442 477788998764 46788889999999999999999
Q ss_pred HhhhccC----------CCeEEEEeCCCccccccHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCccHHHHHhh
Q 017890 252 SLKMEKK----------DACAVAYTGDGGTSEGDFHAALNFAAVMEAP-VVFICRNNGWAISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 252 A~k~~~~----------~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LP-vIfVV~NNg~ais~~~~~~~~~~~ia~~a~a 320 (364)
|.|+.+. +++|+|++|||+++||.+||++++|++++|| +|+|++||+|+|++++.... .+++.+++++
T Consensus 155 A~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a 233 (690)
T 3m49_A 155 AERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSF-SESVEDRYKA 233 (690)
T ss_dssp HHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHH
T ss_pred HHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeecccchhhcc-chhHHHHHHH
Confidence 9987643 7899999999999999999999999999995 89999999999999886554 5789999999
Q ss_pred cCeEEEEE-eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 321 YGIRSIRV-DGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 321 ~G~~~~~V-DGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
|||++++| ||||++++.+|+++|++ ..++|+||+++|++-
T Consensus 234 ~G~~~~~v~DG~d~~~l~~Al~~a~~---~~~~P~lI~v~T~kG 274 (690)
T 3m49_A 234 YGWQVIRVEDGNDIEAIAKAIEEAKA---DEKRPTLIEVRTTIG 274 (690)
T ss_dssp HTCEEEEESCTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTT
T ss_pred cCCcEEEEecCCCHHHHHHHHHHHHh---cCCCCEEEEEEeecc
Confidence 99999999 99999999999887764 257999999999874
|
| >2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=234.69 Aligned_cols=224 Identities=15% Similarity=0.139 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----cCcccccccCCchhHHHHHHHhhcC------CCcEEEcc-CCc---hhHHH
Q 017890 131 VAVKMYSHMVTLQVMDSVLYEAQR-----QGRFSFYLTTIGEEAINIGSAAALS------ADDFILPQ-YRE---PGVLL 195 (364)
Q Consensus 131 ~l~~ly~~M~~~R~~D~~~~~~~r-----qGri~f~~~~~GqEa~~vg~a~aL~------~~D~v~~~-yR~---~g~ll 195 (364)
++.+-+..-++...++.... ..+ .|.++-+++. -|...++....++ ++|+|+.. |-. .++++
T Consensus 76 ~l~~~la~~iR~~~i~~v~~-a~~~~~~~gGH~gs~ls~--ael~~~l~~~~~~~~~~~~~~D~V~~~GH~sp~~Ya~~~ 152 (886)
T 2qtc_A 76 ELERRIRSAIRWNAIMTVLR-ASKKDLELGGHMASFQSS--ATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAF 152 (886)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHTCSCCCCCSHHHHHH--HHHHHHHHHHTCCCCCSSSCCCEEECCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCCCCccCcCCcHHH--HHHHHHHHHHhcCCCCCCCCCCEEEEcchhHHHHHHHHH
Confidence 44434455445555554322 222 4666554444 2555555555577 57877775 333 23466
Q ss_pred hcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCc-cc-ccccCCCcccchhHHHHHHHHhhh-------ccCCCeEEEEe
Q 017890 196 WRGYTLQQFANQVFANKADDGKGRQMPIHYGSKK-LN-YITISSPIATQLPQAVGVAYSLKM-------EKKDACAVAYT 266 (364)
Q Consensus 196 ~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~-~~~~sg~LG~~lp~AvG~A~A~k~-------~~~~~~vv~~~ 266 (364)
..|+..++-|..|+. . ..+.+++.|+...+ ++ +...+|++|+++++|+|+|+|.|+ ++.+++|+|++
T Consensus 153 l~Gr~~~e~l~~fRq-~---~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~avi 228 (886)
T 2qtc_A 153 LEGRLTQEQLDNFRQ-E---VHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFL 228 (886)
T ss_dssp HTTSSCHHHHTTBTC-C---TTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEE
T ss_pred HhCCCCHHHHHhccC-C---CCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEE
Confidence 688755555666542 1 11456777776543 44 778899999999999999999998 77889999999
Q ss_pred CCCccccccHHHHHHHHHHcCC-CEEEEEEcCCccccccccccc-CCccHHHHHhhcCeEEEEE----------------
Q 017890 267 GDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQF-RSDGIVVKGRAYGIRSIRV---------------- 328 (364)
Q Consensus 267 GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~-~~~~ia~~a~a~G~~~~~V---------------- 328 (364)
|||+++||.+|||+|+|+.++| ++||||+||+++|++++.... ...++.++++++||++++|
T Consensus 229 GDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~ 308 (886)
T 2qtc_A 229 GDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSG 308 (886)
T ss_dssp ETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSC
T ss_pred CCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCch
Confidence 9999999999999999999999 699999999999999987642 3567899999999999998
Q ss_pred -----------------------------------------------------eCCCHHHHHHHHHHHHHHhhcCCCcEE
Q 017890 329 -----------------------------------------------------DGNDALAVYTAVQAAREMAISEKRPVL 355 (364)
Q Consensus 329 -----------------------------------------------------DGnD~~av~~a~~~A~~~ar~~~~P~L 355 (364)
||||+.+|++|+++|+++ .++|+|
T Consensus 309 ~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~---~~~Ptl 385 (886)
T 2qtc_A 309 KLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQET---KGKATV 385 (886)
T ss_dssp HHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHC---CSSCEE
T ss_pred HHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHc---CCCCEE
Confidence 799999999999999873 468999
Q ss_pred EEEEeeccC
Q 017890 356 VEVRLNFLW 364 (364)
Q Consensus 356 Iea~T~R~~ 364 (364)
|+++|++-|
T Consensus 386 I~~~T~KG~ 394 (886)
T 2qtc_A 386 ILAHTIKGY 394 (886)
T ss_dssp EEEECCTTT
T ss_pred EEEeeeecc
Confidence 999998743
|
| >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-18 Score=184.45 Aligned_cols=138 Identities=18% Similarity=0.215 Sum_probs=121.1
Q ss_pred CccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCcccccc---HHHHHHHHHHcCC-CEEEEEEc
Q 017890 221 MPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGD---FHAALNFAAVMEA-PVVFICRN 296 (364)
Q Consensus 221 mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~---~~EALn~Aa~~~L-PvIfVV~N 296 (364)
+|+|+....+++...+|+||+++++|+|+|+ ++++..|+|++|||+.++|. .||+.+++..+++ +||.|+++
T Consensus 159 ~pgHp~~~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~ 234 (845)
T 3ahc_A 159 IPSHFAPETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHL 234 (845)
T ss_dssp BCSSCCTTSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEE
T ss_pred CCCCCCCCCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEEC
Confidence 9999975557899999999999999999994 46788999999999999999 9999999999999 89999999
Q ss_pred CCcccccccccc-cCCccHHHHHhhcCeEEE-EEeC-C--CHHHHHHHHHHHHH-----------Hhhc--CCCc--EEE
Q 017890 297 NGWAISTNISEQ-FRSDGIVVKGRAYGIRSI-RVDG-N--DALAVYTAVQAARE-----------MAIS--EKRP--VLV 356 (364)
Q Consensus 297 Ng~ais~~~~~~-~~~~~ia~~a~a~G~~~~-~VDG-n--D~~av~~a~~~A~~-----------~ar~--~~~P--~LI 356 (364)
|+++|+.++... ...+++.+++++|||+++ .||| | |++++.+++.+|++ .+++ .++| ++|
T Consensus 235 N~~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~I 314 (845)
T 3ahc_A 235 NGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPML 314 (845)
T ss_dssp CSBSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEE
T ss_pred CCCcCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEE
Confidence 999999998643 457889999999999999 9999 9 99999998876663 2444 3689 999
Q ss_pred EEEeec
Q 017890 357 EVRLNF 362 (364)
Q Consensus 357 ea~T~R 362 (364)
.++|..
T Consensus 315 i~rT~k 320 (845)
T 3ahc_A 315 IFRTPK 320 (845)
T ss_dssp EEECCT
T ss_pred EEECcc
Confidence 999964
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-17 Score=170.98 Aligned_cols=119 Identities=17% Similarity=0.274 Sum_probs=95.3
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccc----------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAIST---------- 303 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~---------- 303 (364)
..++||+++|.|+|++++. ++++|||++|||+++++ +++|++|+.+++|+++||.|| +|++..
T Consensus 418 ~~g~~G~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~ 491 (603)
T 4feg_A 418 LFATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQND 491 (603)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSC
T ss_pred ccccccchhHHHhhHHHhC----CCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcCCC
Confidence 3589999999999999884 57899999999999986 556999999999988777777 588632
Q ss_pred ccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 304 NISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 304 ~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
.........++++++++||+++++|| +++++.+++++|++ .+.++|+|||++|.|-
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~--~~~~gP~lIev~~~~~ 547 (603)
T 4feg_A 492 FIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKA--IAQHEPVLIDAVITGD 547 (603)
T ss_dssp CCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHH--HTTTSCEEEEEECCCC
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH--hcCCCcEEEEEEeCCC
Confidence 11222345689999999999999998 46678888877762 1468999999999664
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=166.97 Aligned_cols=119 Identities=16% Similarity=0.213 Sum_probs=99.7
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccccc-----
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISEQ----- 308 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~~~----- 308 (364)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|+++++|+++||.|| +|++.......
T Consensus 411 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~~ 484 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNL 484 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCSC
T ss_pred CCCcccChHHHHHHHHHhC----CCCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCCC
Confidence 3689999999999999985 57889999999999986 477999999999987666555 79887643221
Q ss_pred ----cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 309 ----FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 309 ----~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
....++.+++++||+++++|+ +.+++.+++++|++.+|+ ++|+|||++|+|
T Consensus 485 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~gp~liev~~~~ 539 (590)
T 1v5e_A 485 FGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKA-GHTVVIDCKITQ 539 (590)
T ss_dssp CCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHT-TCCEEEEEECCS
T ss_pred ccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCC-CCCEEEEEEecc
Confidence 234689999999999999998 689999999999886654 789999999986
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-16 Score=164.38 Aligned_cols=117 Identities=16% Similarity=0.275 Sum_probs=96.9
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEE-cCCcccccccc-------c
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR-NNGWAISTNIS-------E 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~-NNg~ais~~~~-------~ 307 (364)
.|+||+++|.|+|+|+|.| +++++|||++|||+++++ +++|++|.++++|+++||. ||+|++....+ .
T Consensus 418 ~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 493 (563)
T 2uz1_A 418 LGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNR 493 (563)
T ss_dssp TCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTTC
T ss_pred CccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 5899999999999999986 567899999999999986 3579999999999866655 55788765421 1
Q ss_pred c----cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 Q----FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ~----~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
. ....++.+++++||+++++|+ +.+++.+++++|++ .++|+|||++|++
T Consensus 494 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 546 (563)
T 2uz1_A 494 VTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQALA----HNRPACINVAVAL 546 (563)
T ss_dssp CCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----SSSCEEEEEECCS
T ss_pred ccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH----CCCCEEEEEEecc
Confidence 1 134689999999999999997 68999999988876 5799999999974
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-16 Score=167.63 Aligned_cols=120 Identities=23% Similarity=0.241 Sum_probs=98.2
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~------- 306 (364)
.+|++|+++|.|+|+|+|. ++++|||++|||+++++ .++|++|+++++|+++||.|| +|++.....
T Consensus 440 ~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 513 (616)
T 2pan_A 440 QAGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDY 513 (616)
T ss_dssp TTCCTTCHHHHHHHHHHHC----TTCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCCC
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 3589999999999999985 57899999999999986 457999999999986666555 688753211
Q ss_pred -------c--ccC----CccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 -------E--QFR----SDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 -------~--~~~----~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
. ... ..++.+++++||+++++|+ +++++.+++++|++++++.++|+|||++|.|
T Consensus 514 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev~~~~ 580 (616)
T 2pan_A 514 CVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEVILER 580 (616)
T ss_dssp SCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEEEBCS
T ss_pred cccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 0 111 2589999999999999997 5789999999999877666899999999987
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8e-17 Score=166.52 Aligned_cols=121 Identities=15% Similarity=0.173 Sum_probs=97.9
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc------c
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------E 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~------~ 307 (364)
..|+||+++|.|+|+|+|.+.++.+++|||++|||+++++ +++|++|.++++|+++||.|| +|++..... .
T Consensus 411 ~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 488 (563)
T 2vk8_A 411 LWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQYN 488 (563)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred chhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhcc--HHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCcc
Confidence 3689999999999999999888888999999999999884 566999999999987666555 698754321 1
Q ss_pred ccCCccHHHHHhhcCeE---EEEEeCCCHHHHHHHHH-HHHHHhhcCCCcEEEEEEeec
Q 017890 308 QFRSDGIVVKGRAYGIR---SIRVDGNDALAVYTAVQ-AAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ~~~~~~ia~~a~a~G~~---~~~VDGnD~~av~~a~~-~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++.+++++||++ +++|+ +.+++.++++ ++++ ..++|+|||++|++
T Consensus 489 ~~~~~d~~~~a~a~G~~~~~~~~v~--~~~el~~al~~~a~~---~~~~p~liev~~~~ 542 (563)
T 2vk8_A 489 EIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSFN---DNSKIRMIEVMLPV 542 (563)
T ss_dssp CCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTTT---SCSSEEEEEEECCT
T ss_pred cCCCCCHHHHHHHhCCCCCcEEEec--CHHHHHHHHHHHHHh---CCCCcEEEEEEeCc
Confidence 12346899999999999 99998 5788888887 6553 23579999999986
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-16 Score=162.89 Aligned_cols=114 Identities=25% Similarity=0.355 Sum_probs=94.4
Q ss_pred CCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccccc--------
Q 017890 237 SPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISE-------- 307 (364)
Q Consensus 237 g~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~~-------- 307 (364)
|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|.++++|+++||.|| +|++.....+
T Consensus 401 g~~G~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~ 474 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVP 474 (528)
T ss_dssp CCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCC
T ss_pred ccccchHHHHHHHHHhC----CCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCcc
Confidence 89999999999999985 46789999999999987 678999999999988777666 5888654211
Q ss_pred --ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 --QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 --~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++.+++++||+++++|++ .+++.++++++++ .++|+|||++|.|
T Consensus 475 ~~~~~~~d~~~~a~a~G~~~~~v~~--~~~l~~al~~a~~----~~gp~liev~~~~ 525 (528)
T 1q6z_A 475 GLDVPGIDFRALAKGYGVQALKADN--LEQLKGSLQEALS----AKGPVLIEVSTVS 525 (528)
T ss_dssp SCBCCCCCHHHHHHHHTCEEEEESS--HHHHHHHHHHHHT----CSSCEEEEEEBCC
T ss_pred cCCCCCCCHHHHHHHcCCeEEEeCC--HHHHHHHHHHHHH----CCCcEEEEEEecC
Confidence 11346899999999999999984 6788887777654 6899999999986
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-16 Score=163.42 Aligned_cols=116 Identities=20% Similarity=0.334 Sum_probs=95.6
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~------- 306 (364)
..++||+++|.|+|+|+|. ++++|||++|||+++++ .++|++|.++++|+++||.|| +|++.....
T Consensus 418 g~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 491 (566)
T 1ozh_A 418 GQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRL 491 (566)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CcccccchHHHHHHHHHhC----CCCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCC
Confidence 3589999999999999985 47899999999999984 456999999999987666555 688765321
Q ss_pred --cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++.+++++||+++++|+ +.+++.+++++|++ .++|+|||++|+|
T Consensus 492 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~ 543 (566)
T 1ozh_A 492 SGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAMD----VDGPAVVAIPVDY 543 (566)
T ss_dssp CSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHHH----SSSCEEEEEEBCC
T ss_pred ccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 12334689999999999999998 57789888888875 5799999999987
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-16 Score=161.96 Aligned_cols=116 Identities=23% Similarity=0.355 Sum_probs=95.0
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEE-cCCccccccc--------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR-NNGWAISTNI-------- 305 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~-NNg~ais~~~-------- 305 (364)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|.++++|+++||. ||+|++....
T Consensus 434 g~g~mG~~l~~AiGaa~a~----~~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 507 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRS 507 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcCCC
Confidence 3589999999999999985 46889999999999985 4679999999999865555 5568876542
Q ss_pred -c--cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 -S--EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 -~--~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
. ......++.+++++||+++++|+ +.+++.+++++|++ .++|+|||++|.|
T Consensus 508 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 561 (573)
T 2iht_A 508 HDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGAE----LGRPFLIEVPVNY 561 (573)
T ss_dssp CGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHHT----SSSCEEEEEEBCC
T ss_pred cCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCC
Confidence 1 22334689999999999999997 67888888887764 6899999999986
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.9e-16 Score=163.29 Aligned_cols=116 Identities=19% Similarity=0.271 Sum_probs=94.6
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEE-cCCcccccccc-----c-
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR-NNGWAISTNIS-----E- 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~-NNg~ais~~~~-----~- 307 (364)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ + ++|++|+++++|+++||. ||+|++..... .
T Consensus 511 ~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~~~-~-~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~ 584 (677)
T 1t9b_A 511 GLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT-L-TELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHR 584 (677)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH-G-GGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTC
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHhcc-H-HHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCCC
Confidence 3589999999999999984 67899999999999884 4 459999999999865555 55688754321 1
Q ss_pred ----ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 ----QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ----~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++.+++++||+++++|+ +.+++.+++++|++ .++|+|||++|.|
T Consensus 585 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 637 (677)
T 1t9b_A 585 YSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVS----TKGPVLLEVEVDK 637 (677)
T ss_dssp CCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----CSSCEEEEEEBCS
T ss_pred cccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHH----CCCcEEEEEEecC
Confidence 1234689999999999999997 68899999988875 5789999999986
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-16 Score=162.74 Aligned_cols=115 Identities=19% Similarity=0.276 Sum_probs=94.9
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc--------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS-------- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~-------- 306 (364)
.|+||+++|.|+|+|+|. ++++|||++|||+++++ .++|++|.++++|+++||.|| +|++.....
T Consensus 423 ~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 496 (589)
T 2pgn_A 423 EGILGCGFPMALGAQLAE----PNSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQNN 496 (589)
T ss_dssp TCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSCC
T ss_pred cchhhhHHHHHHHHHHhC----CCCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCCc
Confidence 489999999999999985 47889999999999985 478999999999986666555 588765421
Q ss_pred -cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 -EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 -~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++.+++++||+++++|+ +.+++.+++++|++ .++|+|||++|+|
T Consensus 497 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~ 547 (589)
T 2pgn_A 497 WTEFMNPDWVGIAKAFGAYGESVR--ETGDIAGALQRAID----SGKPALIEIPVSK 547 (589)
T ss_dssp SCBCCCCCHHHHHHHHTCEEEECT--TTCCHHHHHHHHHH----HCSCEEEEEECCS
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 22335689999999999999998 45688888988875 4789999999986
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.8e-16 Score=158.97 Aligned_cols=116 Identities=19% Similarity=0.280 Sum_probs=95.5
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEE-EcCCccccccccc----cc
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNISE----QF 309 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV-~NNg~ais~~~~~----~~ 309 (364)
..++||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|+++++|+++|| +||+|++.....+ ..
T Consensus 407 ~~g~mG~~l~~A~G~ala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 480 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGS----QDRQHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYI 480 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCC
T ss_pred cccchhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccCC
Confidence 3589999999999999985 57899999999999984 456999999999975555 5557988765432 22
Q ss_pred CCccHHHHHhhcCe-----EEEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEEeec
Q 017890 310 RSDGIVVKGRAYGI-----RSIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVRLNF 362 (364)
Q Consensus 310 ~~~~ia~~a~a~G~-----~~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~T~R 362 (364)
...++.+++++||+ ++++|+ +.+++.+++++|++ . ++|+|||++|.|
T Consensus 481 ~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~----~~~gp~liev~~~~ 533 (566)
T 2vbi_A 481 KNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTEAIARAKA----NTRGPTLIECQIDR 533 (566)
T ss_dssp CCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHHHHHHHHH----CCSSCEEEEEECCT
T ss_pred CCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHHHHHHHHh----cCCCcEEEEEEeCc
Confidence 34689999999999 999998 68899999988875 4 789999999986
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-15 Score=158.33 Aligned_cols=117 Identities=16% Similarity=0.229 Sum_probs=93.8
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEE-EcCCcccccccc---c---
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNIS---E--- 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV-~NNg~ais~~~~---~--- 307 (364)
..++||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|.++++|+++|| +||+|++..... .
T Consensus 423 ~~g~mG~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 496 (570)
T 2vbf_A 423 LWGSIGYTFPAALGSQIAD----KESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYN 496 (570)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred cchhhhhhHHHHHHHHHhC----CCCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCcc
Confidence 4589999999999999985 57899999999999984 456999999999976555 555798765321 1
Q ss_pred ccCCccHHHHHhhcCeE-----EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 QFRSDGIVVKGRAYGIR-----SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ~~~~~~ia~~a~a~G~~-----~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++.+++++||++ +++|+ +.+++.++++++. ++.++|+|||++|+|
T Consensus 497 ~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~---~~~~~p~liev~~~~ 551 (570)
T 2vbf_A 497 DIPMWNYSKLPETFGATEDRVVSKIVR--TENEFVSVMKEAQ---ADVNRMYWIELVLEK 551 (570)
T ss_dssp CCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHHHHHHHHHHH---HCTTSEEEEEEECCT
T ss_pred CCCCCCHHHHHHHcCCCcCCcceEEec--CHHHHHHHHHHHH---hcCCCcEEEEEEcCc
Confidence 12346899999999998 89997 5888888888742 246789999999986
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=156.97 Aligned_cols=116 Identities=22% Similarity=0.245 Sum_probs=94.4
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEE-EcCCcccccccc-------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNIS------- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV-~NNg~ais~~~~------- 306 (364)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ .++|++|+++++|+++|| +||+|++.....
T Consensus 424 ~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 497 (590)
T 1ybh_A 424 GLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKAN 497 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTC
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcCCc
Confidence 3589999999999999985 47889999999999985 457999999999976555 555788754211
Q ss_pred ---ccc--------CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 ---EQF--------RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 ---~~~--------~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
... ...++.+++++||+++++|+ +.+++.+++++|++ .++|+|||++|+|
T Consensus 498 ~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~ 558 (590)
T 1ybh_A 498 RAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTMLD----TPGPYLLDVICPH 558 (590)
T ss_dssp CCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHHH----SSSCEEEEEECCT
T ss_pred cccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 101 13589999999999999997 68899999988876 5799999999986
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-15 Score=156.53 Aligned_cols=117 Identities=16% Similarity=0.225 Sum_probs=95.6
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEE-EEcCCccccccccc----cc
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFI-CRNNGWAISTNISE----QF 309 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfV-V~NNg~ais~~~~~----~~ 309 (364)
..++||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|.++++|+++| ++||+|++.....+ ..
T Consensus 411 ~~g~~G~~l~~A~G~ala~----~~~~vv~i~GDGs~~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 484 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNI 484 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCC
T ss_pred CcchhhhHHHHHHHHHHhC----CCCcEEEEEcChhHhcc--HHHHHHHHHcCCCcEEEEEECCcceEeeeeccCCCcCC
Confidence 3589999999999999985 57899999999999884 45599999999997555 55667988765432 22
Q ss_pred CCccHHHHHhhcCe---------EEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 310 RSDGIVVKGRAYGI---------RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 310 ~~~~ia~~a~a~G~---------~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
...++.+++++||+ ++++|+ +.+++.++++++++. .++|+|||++|+|
T Consensus 485 ~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~~~---~~gp~liev~~~~ 541 (568)
T 2wvg_A 485 KNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVALAN---TDGPTLIECFIGR 541 (568)
T ss_dssp CCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHC---CSSCEEEEEECCT
T ss_pred CCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEcCc
Confidence 34689999999999 999997 688999999888762 2789999999986
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
Probab=99.58 E-value=9.7e-16 Score=157.93 Aligned_cols=116 Identities=18% Similarity=0.211 Sum_probs=93.2
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEc-CCcccccccc------c
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRN-NGWAISTNIS------E 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~N-Ng~ais~~~~------~ 307 (364)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|.+|.++++|+++||.| |+|++..... .
T Consensus 406 ~~g~mG~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 479 (552)
T 1ovm_A 406 LWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYN 479 (552)
T ss_dssp TTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred hhHhhhhHHHHHHHHHHhC----CCCcEEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCcc
Confidence 3589999999999999985 46889999999999874 56699999999997666554 4698864321 1
Q ss_pred ccCCccHHHHHhhcCe----EEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 QFRSDGIVVKGRAYGI----RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ~~~~~~ia~~a~a~G~----~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++.+++++||+ ++++|+ +.+++.+++++|+ +.++|+|||++|.+
T Consensus 480 ~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~ 532 (552)
T 1ovm_A 480 DIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVA----HHERLSLIEVMLPK 532 (552)
T ss_dssp CCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHT----TCSSEEEEEEECCT
T ss_pred cCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEcCc
Confidence 1234689999999999 999998 5788888887665 36889999999986
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-15 Score=153.76 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=94.1
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-c-cccccc--ccc--
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-W-AISTNI--SEQ-- 308 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~-ais~~~--~~~-- 308 (364)
..|+||+++|.|+|+++| ++++|||++|||++++. .++|++|.++++|+++||.||+ | ++.... ...
T Consensus 424 ~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 496 (568)
T 2c31_A 424 TWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVIS 496 (568)
T ss_dssp TTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBCC
T ss_pred CCccccccHHHHHHHHhC-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCcc
Confidence 458999999999999997 46789999999999874 4569999999999988877776 3 443211 000
Q ss_pred ---cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 309 ---FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 309 ---~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
....++.+++++||+++++|+ +.+++.+++++|++ .++|+|||++|.|-
T Consensus 497 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~ 548 (568)
T 2c31_A 497 CTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVA----SGKPCLINAMIDPD 548 (568)
T ss_dssp TTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHHH----HTSCEEEEEEBCTT
T ss_pred cCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeccc
Confidence 335689999999999999997 68999999998875 47899999999863
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-15 Score=156.71 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=94.0
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEE-EcCCcccccccc-----ccc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNIS-----EQF 309 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV-~NNg~ais~~~~-----~~~ 309 (364)
.|+||+++|.|+|+|+|. ++++|||++|||++++ .+++|++|.++++|+++|| +||+|++..... ...
T Consensus 421 ~g~mG~~l~~A~G~ala~----~~~~vv~i~GDG~~~~--~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 494 (565)
T 2nxw_A 421 YAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQM--TGWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAFNDL 494 (565)
T ss_dssp TCCTTCHHHHHHHHHHHT----TTCCEEEEEEHHHHHH--HGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGGGBC
T ss_pred cccccccchHHHHHHHhC----CCCcEEEEEechHHHh--hHHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCCCcC
Confidence 589999999999999985 4678999999999985 4677999999999976555 555688754321 123
Q ss_pred CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcE-EEEEEeec
Q 017890 310 RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPV-LVEVRLNF 362 (364)
Q Consensus 310 ~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~-LIea~T~R 362 (364)
...++.+++++||+++++|+ +.+++.+++++|++ .++|+ |||++|+|
T Consensus 495 ~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~~liev~~~~ 542 (565)
T 2nxw_A 495 DDWRFADMAAGMGGDGVRVR--TRAELKAALDKAFA----TRGRFQLIEAMIPR 542 (565)
T ss_dssp CCCCHHHHTGGGTSEEEEEC--BHHHHHHHHHHHHH----CCSSCEEEEEECCT
T ss_pred CCCCHHHHHHHcCCCEEEeC--CHHHHHHHHHHHHh----cCCCeEEEEEEccc
Confidence 45689999999999999998 57899999988875 46888 99999986
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.7e-15 Score=153.85 Aligned_cols=116 Identities=28% Similarity=0.302 Sum_probs=92.3
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEE-cCCcccccccc-------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICR-NNGWAISTNIS------- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~-NNg~ais~~~~------- 306 (364)
..|+||+++|.|+|+++|. ++++|||++|||+++++ .++|++|.++++|+++||. ||+|++.....
T Consensus 404 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~~~ 477 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATE----PERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLT 477 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC-----------
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCCCC
Confidence 4589999999999999885 57889999999999875 4669999999999765554 55687643211
Q ss_pred --cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++.+.+++||+++++|+ +++++.+++++|++ .++|+|||++|.+
T Consensus 478 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 529 (549)
T 3eya_A 478 DGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRAFS----IDGPVLVDVVVAK 529 (549)
T ss_dssp -CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHHHH----SSSCEEEEEEBCC
T ss_pred cCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 11234689999999999999997 67788888888876 5899999999976
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.9e-15 Score=152.57 Aligned_cols=115 Identities=14% Similarity=0.119 Sum_probs=93.0
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-c-cccccc---c---
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-W-AISTNI---S--- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~-ais~~~---~--- 306 (364)
..|+||+++|.|+|+++| ++++|||++|||++++. + ++|.+|.++++|+++||.||+ | ++.... .
T Consensus 419 ~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~~~-~-~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 491 (564)
T 2q28_A 419 TWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFGFS-G-MEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAP 491 (564)
T ss_dssp TTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT-G-GGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCCC
T ss_pred CCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhhcc-H-HHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCCc
Confidence 458999999999999997 46789999999999874 4 559999999999987777775 4 553211 0
Q ss_pred c---ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 E---QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 ~---~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
. .....++.+++++||+++++|+ +++++.+++++|++ .++|+|||++|.|
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 544 (564)
T 2q28_A 492 SPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGIQ----SRKPTIINVVIDP 544 (564)
T ss_dssp CTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHHH----HTSCEEEEEEBCT
T ss_pred cccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 0 1124689999999999999997 68999999998875 4789999999986
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-15 Score=154.60 Aligned_cols=114 Identities=18% Similarity=0.115 Sum_probs=90.7
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEE-EcCCcccccccc--------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNIS-------- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV-~NNg~ais~~~~-------- 306 (364)
.++||+++|.|+|+|+|. +++|||++|||+++++ +. +|++|+++++|+++|| +||+|++.....
T Consensus 454 ~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~-~~-eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~ 526 (604)
T 2x7j_A 454 ANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHD-LN-GLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTHF 526 (604)
T ss_dssp TCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHT-GG-GGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHHHH
T ss_pred cCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhH-HH-HHHHhhhcCCCeEEEEEeCCCCcccccCCCCccchhh
Confidence 368999999999999983 5789999999999985 44 5999999999986666 555788754221
Q ss_pred -cc---cCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 -EQ---FRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 -~~---~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.. ....++.+++++||+++++|+ +.+++.+++++|+ +.++|+|||++|.|
T Consensus 527 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~~~ 580 (604)
T 2x7j_A 527 EDLFGTPTGLDFKHAAALYGGTYSCPA--SWDEFKTAYAPQA----DKPGLHLIEIKTDR 580 (604)
T ss_dssp HHHTTCCCCCCTHHHHHHTTCEEECCS--SHHHHHHHCCCCC----SSCCEEEEEEECCH
T ss_pred HhhccCCCCCCHHHHHHHcCCeEEecC--CHHHHHHHHHHHH----hCCCCEEEEEECCc
Confidence 00 124589999999999999998 5788877777665 36899999999976
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-14 Score=150.16 Aligned_cols=113 Identities=20% Similarity=0.180 Sum_probs=85.7
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccc-------cc
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNI-------SE 307 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~-------~~ 307 (364)
.|.+|+ +|.|+|+++| ++++|||++|||++++. +.| |++|.++++|+++||.||+ |++.... ..
T Consensus 416 ~g~~G~-l~~A~Gaa~a-----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~ 487 (556)
T 3hww_A 416 SGIDGL-LSTAAGVQRA-----SGKPTLAIVGDLSALYD-LNA-LALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERER 487 (556)
T ss_dssp CCSSSH-HHHHHHHHHH-----HCCCEEEEEEHHHHHHT-GGG-HHHHTTCSSCEEEEEEESCC----------------
T ss_pred cccccH-HHHHHHHHhc-----CCCcEEEEEccHHhhhc-chh-hHhhcccCCCcEEEEEECCCCCcccCCCCcchhHHH
Confidence 456677 9999999998 26789999999999874 444 9999999999988877776 5654321 11
Q ss_pred ---ccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 ---QFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ---~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++.+.|++||+++++|+ +.+++.+++++|++ .++|+|||++|.|
T Consensus 488 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 539 (556)
T 3hww_A 488 FYLMPQNVHFEHAAAMFELKYHRPQ--NWQELETAFADAWR----TPTTTVIEMVVND 539 (556)
T ss_dssp -CCCCCCCCSHHHHHHTTCEEECCS--SHHHHHHHHHHHTT----SSSEEEEEEECCS
T ss_pred hccCCCCCCHHHHHHHcCCcEEecC--CHHHHHHHHHHHHh----CCCCEEEEEECCc
Confidence 1235689999999999999997 57788777776654 6899999999986
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-14 Score=146.13 Aligned_cols=110 Identities=17% Similarity=0.133 Sum_probs=78.8
Q ss_pred cccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---c--c----c
Q 017890 239 IATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI---S--E----Q 308 (364)
Q Consensus 239 LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~---~--~----~ 308 (364)
+|+++|.|+|+|+ ++++|||++|||++++. + ++|++|.++++|+++||.|| +|++.... . . .
T Consensus 438 ~~g~l~~AiGaa~------~~~~vv~i~GDGsf~~~-~-~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~ 509 (578)
T 3lq1_A 438 IDGVVSSALGASV------VFQPMFLLIGDLSFYHD-M-NGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESL 509 (578)
T ss_dssp SSSHHHHHHHHTT------TSSSEEEEEEHHHHHHT-G-GGGHHHHHTTCCEEEEEECCC--------------------
T ss_pred cccHHHHHHHHhc------CCCCEEEEEchHHHHhh-H-HHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhh
Confidence 3446999999863 37889999999999874 4 45999999999998777777 57765421 0 0 0
Q ss_pred c---CCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 309 F---RSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 309 ~---~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
+ ...++.+.|++||+++++|+ +.+++.+++++|++ .++|+|||++|.|
T Consensus 510 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~ 560 (578)
T 3lq1_A 510 FGTSTELDFRFAAAFYDADYHEAK--SVDELEEAIDKASY----HKGLDIIEVKTNR 560 (578)
T ss_dssp -----CCCTHHHHHHTTCEEEECC--SHHHHHHHHHHHTT----SSSEEEEEEC---
T ss_pred ccCCCCCCHHHHHHHcCCceEecC--CHHHHHHHHHHHHh----CCCCEEEEEECCc
Confidence 1 23589999999999999997 68888888877764 6899999999876
|
| >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-08 Score=113.43 Aligned_cols=97 Identities=13% Similarity=0.145 Sum_probs=75.0
Q ss_pred CCeEEEEeCCC-ccccccHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-------c---------cCCccHHHHHhh
Q 017890 259 DACAVAYTGDG-GTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISE-------Q---------FRSDGIVVKGRA 320 (364)
Q Consensus 259 ~~~vv~~~GDG-a~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~-------~---------~~~~~ia~~a~a 320 (364)
++.||++.||| ++++| +.| |.+|..+++||++||.||+ |+...-... . ....|+.+.|++
T Consensus 953 ~~~Vv~i~GDG~~~~mg-~~e-L~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIG-YGG-LDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp CCEEEEEEEHHHHHTTT-HHH-HHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred CCcEEEEeCcHHHHHcc-hHH-HHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence 47899999999 88987 554 9999999999988887776 554331110 0 112589999999
Q ss_pred cCeEEEEE-eC-CCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 321 YGIRSIRV-DG-NDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 321 ~G~~~~~V-DG-nD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
||++++++ .- .++.++.+++++|++ .++|+|||+.+-
T Consensus 1031 ~G~~~va~~~v~~~~~~l~~al~eAl~----~~GP~lI~v~~~ 1069 (1231)
T 2c42_A 1031 YGYVYVATVSMGYSKQQFLKVLKEAES----FPGPSLVIAYAT 1069 (1231)
T ss_dssp TSSSEEEEECTTTCHHHHHHHHHHHHH----SSSCEEEEEECC
T ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHh----cCCCEEEEEeec
Confidence 99999964 33 489999999999987 589999999863
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.23 Score=51.05 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=72.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.+++|..|=|+++ ..-++.-|..-++|+|+|+-+-........ ......|....++.+--.
T Consensus 63 ~A~Gyar~---tg~p~v~~~TsGpG~~N---~~~~v~~A~~~~~Pll~itg~~~~~~~~~~-~~~Q~~d~~~~~~~~~k~ 135 (573)
T 2iht_A 63 AADVLARI---TGRPQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIFPN-DTHQCLDSVAIVAPMSKY 135 (573)
T ss_dssp HHHHHHHH---HCSCEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCCTT-TSTTCCCHHHHHGGGSSE
T ss_pred HHHHHHHH---HCCCEEEEEccCchHHH---HHHHHHHHHhhCCCEEEEcccCcccccCCc-CccccCCHHHHHHhHhhE
Confidence 45566544 34445566666777665 556788888889999999877654322210 111223667777777767
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..++. +++++.+.+++|+..|..+. ||+.|++-
T Consensus 136 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (573)
T 2iht_A 136 AVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISLP 169 (573)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEEE
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 77775 67788899999998888775 89999874
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.36 Score=49.73 Aligned_cols=104 Identities=21% Similarity=0.178 Sum_probs=72.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccccccc-ccccCCccHHHHHhhcCe
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI-SEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~-~~~~~~~~ia~~a~a~G~ 323 (364)
+|.|.|.+ .++-.+++|..|=|+++ ..-++.-|..-++|+|+|+-+-........ .-| ..|... ++.+--
T Consensus 58 ~A~GyAr~---tg~p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q--~~d~~~-~~~~tk 128 (589)
T 2pgn_A 58 MVNGYNYV---KDRSAAVGAWHCVGNLL---LHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQ--QVPWQS-FTPIAR 128 (589)
T ss_dssp HHHHHHHH---HTSCCEEEEEEGGGGGG---CHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSS--CCCGGG-GTTTSS
T ss_pred HHHHHHHH---HCCCEEEEEecCchHHH---HHHHHHHHHhcCCCEEEEecCCcccccCCCCccc--ccChhh-ccccEE
Confidence 46666554 35567888889999887 356788888999999999876654322111 112 224555 666665
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
...++. +++++.+.+.+|+..|..+. ||+.|++-
T Consensus 129 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 163 (589)
T 2pgn_A 129 STQRVE--RLDKVGEAIHEAFRVAEGHPAGPAYVDIP 163 (589)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHTSSSCCEEEEEEE
T ss_pred EEeecC--CHHHHHHHHHHHHHHHhcCCCccEEEEeC
Confidence 666665 67788888999988888776 89999874
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.23 Score=51.24 Aligned_cols=106 Identities=26% Similarity=0.252 Sum_probs=73.0
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
-+|.|.|.+. ++-.+++|..|=|+++ ..-++.-|..-++|+|+|+-+-....... ......|....++.+--
T Consensus 64 ~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~g~--~~~Q~~d~~~~~~~~~k 135 (590)
T 1ybh_A 64 FAAEGYARSS---GKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSITK 135 (590)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCHHHHHGGGSS
T ss_pred HHHHHHHHHH---CCCEEEEeccCchHHH---HHHHHHHHHhhCCCEEEEeCcCCccccCC--CcccccCHHHHHHHHhC
Confidence 3566666543 4455667777777776 45678888899999999987654322211 11222366777777766
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
...+|. +++++.+++++|+..++.+. ||+.|++-
T Consensus 136 ~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPV~l~iP 170 (590)
T 1ybh_A 136 HNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVP 170 (590)
T ss_dssp EEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eEEecC--CHHHHHHHHHHHHHHHhhCCCceEEEEeC
Confidence 677775 78889999999998888764 89999864
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.24 Score=50.81 Aligned_cols=105 Identities=19% Similarity=0.105 Sum_probs=71.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.++++..|=|+++ ..-++.-|..-++|+|+|+-+-......... ....|....++.+--.
T Consensus 63 ~A~Gyar~---tg~p~v~~~TsGpG~~N---~~~~l~~A~~~~vPll~itg~~~~~~~~~~~--~Q~~d~~~~~~~~tk~ 134 (566)
T 1ozh_A 63 MAAAVGRI---TGKAGVALVTSGPGCSN---LITGMATANSEGDPVVALGGAVKRADKAKQV--HQSMDTVAMFSPVTKY 134 (566)
T ss_dssp HHHHHHHH---HSSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGCSE
T ss_pred HHHHHHHH---HCCCEEEEEccChHHHH---HHHHHHHHHhcCCCEEEEeCCCccccCCCCc--ccccCHHHHHHHHhhe
Confidence 46666554 34445666666777776 3566888888899999998766543221111 1224667777777777
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..+|. +++++.+.+++|+..|..+. ||+.|++-
T Consensus 135 ~~~v~--~~~~~~~~i~~A~~~A~~~r~GPV~l~iP 168 (566)
T 1ozh_A 135 AIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSLP 168 (566)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 77775 67788888888888887774 89999874
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.3 Score=49.99 Aligned_cols=105 Identities=21% Similarity=0.167 Sum_probs=71.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCC-ccHHHHHhhcCe
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRS-DGIVVKGRAYGI 323 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~-~~ia~~a~a~G~ 323 (364)
+|.|.|.+. ++-.+++|..|=|+++ ..-++.-|..-++|+|+|+-+-......... ... .|....++.+--
T Consensus 56 ~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~~l~~A~~~~~Pll~itg~~~~~~~~~~~--~Q~~~d~~~~~~~~tk 127 (563)
T 2uz1_A 56 AAEGYARAG---AKLGVALVTAGGGFTN---AVTPIANAWLDRTPVLFLTGSGALRDDETNT--LQAGIDQVAMAAPITK 127 (563)
T ss_dssp HHHHHHHHH---TSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTSCC--TTCCCCHHHHHGGGCS
T ss_pred HHHHHHHHh---CCCEEEEEccCccHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCchh--hhhhccHHHHhhhhhc
Confidence 566666543 4445566666767776 3456777888899999998776543222111 122 467777777777
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
...++. +++++.+.+.+|+..+..+. ||+.|++-
T Consensus 128 ~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP 162 (563)
T 2uz1_A 128 WAHRVM--ATEHIPRLVMQAIRAALSAPRGPVLLDLP 162 (563)
T ss_dssp EEEECC--CGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred eEEEcC--CHHHHHHHHHHHHHHhcCCCCceEEEEeC
Confidence 777775 67788888888888888765 89999874
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.45 Score=48.65 Aligned_cols=107 Identities=20% Similarity=0.142 Sum_probs=66.4
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccccccc---cccc---CCccHHHH
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI---SEQF---RSDGIVVK 317 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~---~~~~---~~~~ia~~ 317 (364)
-+|.|.|.+ .+ -.++++..|=|+++ ..-++.-|...++|+|+|+-+-........ .... ...+....
T Consensus 55 ~~A~Gyar~---tg-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~ 127 (566)
T 2vbi_A 55 FSAEGYARS---NG-AAAAVVTFSVGAIS---AMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEM 127 (566)
T ss_dssp HHHHHHHHH---HS-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHH
T ss_pred HHHHHHHhh---cC-CeEEEEeCCCCHHH---HHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHH
Confidence 356666654 34 44556666777775 456677888899999999976553221110 0000 11256677
Q ss_pred HhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 318 GRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 318 a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
.+.+--...++. +++++.+.+++|+..|..+.+|+.|++-
T Consensus 128 ~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP 167 (566)
T 2vbi_A 128 ARQVTCAAESIT--DAHSAPAKIDHVIRTALRERKPAYLDIA 167 (566)
T ss_dssp HHTTCSEEEEEC--SSSSHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HhhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 777777777775 4445556666666666556799999874
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=92.38 E-value=0.52 Score=48.19 Aligned_cols=106 Identities=18% Similarity=0.119 Sum_probs=68.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccccccc---cccc---CCccHHHHH
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI---SEQF---RSDGIVVKG 318 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~---~~~~---~~~~ia~~a 318 (364)
+|.|.|.+. + ..++++..|=|+++ ..-++.-|..-++|+|+|+-+-........ .... ...+....+
T Consensus 56 ~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~ 128 (568)
T 2wvg_A 56 SAEGYARAK---G-AAAAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMA 128 (568)
T ss_dssp HHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHH
T ss_pred HHHHHHHhh---C-CeEEEEeCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHH
Confidence 566666543 4 45666667777775 456777888899999999976654221110 0000 112566777
Q ss_pred hhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 319 RAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 319 ~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
+.+--...+|. +++++...+.+|+..|..+.||+.|++-
T Consensus 129 ~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP 167 (568)
T 2wvg_A 129 KNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIA 167 (568)
T ss_dssp TTSCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 77766677775 5666777777777766666799999874
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.36 Score=49.22 Aligned_cols=105 Identities=14% Similarity=-0.002 Sum_probs=69.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.+++|..|=|+++ ..-++.-|..-++|+|+|+-+-....... ......+..+.++.+--.
T Consensus 56 ~A~GyAr~---tg~~~v~~~TsGpG~~N---~~~gi~~A~~~~vPvl~itg~~~~~~~~~--~~~Q~~d~~~~~~~~tk~ 127 (549)
T 3eya_A 56 AAGAEAQL---SGELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQELFRECSHY 127 (549)
T ss_dssp HHHHHHHH---HSSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEESCGGGTTS--CCTTCCCHHHHTSTTCSE
T ss_pred HHHHHHHH---hCCCEEEEeCCCCcHhh---hHHHHHHHHhhCCCEEEEeCCCchhhcCC--CCCCccCHHHHHhhhhhe
Confidence 46666554 34455667777888776 34678888899999999986543221111 111123566666666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..++. +++++.+.+.+|+..|....+|+.|++-
T Consensus 128 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 160 (549)
T 3eya_A 128 CELVS--SPEQIPQVLAIAMRKAVLNRGVSVVVLP 160 (549)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 66665 6777888888888777777899999863
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.45 Score=50.18 Aligned_cols=105 Identities=21% Similarity=0.222 Sum_probs=71.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.+++|..|=|+++ ..-++.-|..-++|+|+|+-+-....... ......|....++.+--.
T Consensus 135 aAdGyAr~---tGkpgvv~~TsGpG~~N---~~~gia~A~~d~vPllvItG~~~~~~~g~--~a~Q~~Dq~~i~~~~tk~ 206 (677)
T 1t9b_A 135 MAEGYARA---SGKPGVVLVTSGPGATN---VVTPMADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVVGISRSCTKW 206 (677)
T ss_dssp HHHHHHHH---HSSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHHHHTGGGSSE
T ss_pred HHHHHHHH---HCCCEEEEECCChHHHH---HHHHHHHHHHcCCCEEEEeCCCChhhcCC--CCccccCHHHHhhhheeE
Confidence 56666654 34455677777777776 35568888888999999987654322111 111223556666666656
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|. +++++...+++|+..|..+ .||+.|++-
T Consensus 207 ~~~v~--~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 207 NVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 66775 7888999999999888876 589999875
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.34 Score=49.46 Aligned_cols=107 Identities=17% Similarity=0.191 Sum_probs=70.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+. ++-.+++|..|=|+++ ..-++.-|..-++|+|+|+-+-...............+....++.+--.
T Consensus 60 ~A~Gyar~t---g~pgv~~~TsGpG~~N---~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~ 133 (564)
T 2q28_A 60 AAAASGFLT---QKPGICLTVSAPGFLN---GLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKA 133 (564)
T ss_dssp HHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSE
T ss_pred HHHHHHHHh---CCCEEEEEccCchHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhhe
Confidence 466666543 4445666666766665 5567888888999999998765432211000111223566677777666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|. +++++.+.+++|+..|..+ .||+.|++-
T Consensus 134 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 167 (564)
T 2q28_A 134 AFRVN--QPQDLGIALARAIRVSVSGRPGGVYLDLP 167 (564)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 77775 6777888888888888774 589999864
|
| >1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.16 Score=50.26 Aligned_cols=108 Identities=13% Similarity=0.163 Sum_probs=59.9
Q ss_pred cchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc-ccccccccCCccHHHHHh
Q 017890 241 TQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI-STNISEQFRSDGIVVKGR 319 (364)
Q Consensus 241 ~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai-s~~~~~~~~~~~ia~~a~ 319 (364)
..+.+|+|+|++ ..+.++...|.|-... .+.|..++..++|+|+++-+..... ..+...+. .+.+..+..
T Consensus 75 ~a~~~a~Gaa~a-----G~r~~~~ts~~G~~~~---~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~-sd~~~~~~~ 145 (395)
T 1yd7_A 75 ASIAAAIGASWA-----GAKAMTATSGPGFSLM---QENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQ-GDIMQAIWG 145 (395)
T ss_dssp HHHHHHHHHHHT-----TCCEEEEEETTHHHHH---TTTCC----CCCCEEEEEEC------------------------
T ss_pred HHHHHHHHHHHh-----CCcEEEEeCchHHHHH---HHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccch-hHHHHHHhc
Confidence 335567777665 2456777778887642 4456667788899998887765322 11111111 111222322
Q ss_pred ---hcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 320 ---AYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 320 ---a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
.+|++++... ++.+.++.+..|.+.+++.+.|+++...
T Consensus 146 ~~g~~g~~vl~p~--~~qea~~l~~~A~~lA~~~~~PVi~~~~ 186 (395)
T 1yd7_A 146 THGDHSLIVLSPS--TVQEAFDFTIRAFNLSEKYRTPVILLTD 186 (395)
T ss_dssp ---CCCCEEECCC--SHHHHHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred cCCCcceEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEcc
Confidence 2468777654 7999999999999888877899998753
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=0.38 Score=49.26 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=69.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.+++|..|=|+++ ..-++..|..-++|+|+|+-+-...............|....++.+--.
T Consensus 62 ~A~GyAr~---tg~pgv~~~TsGpG~~N---~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~ 135 (568)
T 2c31_A 62 AASIAGYI---EGKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKA 135 (568)
T ss_dssp HHHHHHHH---HSSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSE
T ss_pred HHHHHHHH---hCCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhhe
Confidence 46666654 34445666666767665 5567888888999999998765432211000111123556666666666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhc-CCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAIS-EKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~-~~~P~LIea~ 359 (364)
..+|. +++++...+.+|+..|.. ..||+.|++-
T Consensus 136 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (568)
T 2c31_A 136 SFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLP 169 (568)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eeecC--CHHHHHHHHHHHHHHhcCCCCceEEEeCC
Confidence 67775 677788888888888877 4589999864
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=0.36 Score=49.79 Aligned_cols=104 Identities=23% Similarity=0.077 Sum_probs=69.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.++++..|=|+++ ..-++.-|..-++|+|+|+-+-..........| ..+....++.+--.
T Consensus 58 ~A~GyAr~---tgk~~v~~~tsGpG~~N---~~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q--~~d~~~~~~~~tk~ 129 (590)
T 1v5e_A 58 AAVMQSKF---GGNLGVTVGSGGPGASH---LINGLYDAAMDNIPVVAILGSRPQRELNMDAFQ--ELNQNPMYDHIAVY 129 (590)
T ss_dssp HHHHHHHT---TCCCCEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTT--CCCCHHHHHTTCSE
T ss_pred HHHHHHHH---HCCCEEEEeCcChHHHH---HHHHHHHHHhcCCCEEEEcCCCCcccCCCCccc--ccCHHHHHHhhccE
Confidence 45555543 34445666666777776 355677788889999999877654322211111 23556667777656
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
..++. +++++.+.+++|++.+..+. +|+.| +-
T Consensus 130 ~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l-iP 162 (590)
T 1v5e_A 130 NRRVA--YAEQLPKLVDEAARMAIAKRGVAVLE-VP 162 (590)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHHTTSEEEEE-EE
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhcCCCceEEE-Ec
Confidence 77775 67788888888888888777 89998 53
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=1.1 Score=46.89 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=64.8
Q ss_pred HHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhhcCe
Q 017890 246 AVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 246 AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a~G~ 323 (364)
++|+|.++-+.+..+++++.++++.. -.++.+..++..++|+++++...+++. .++++ .+..+++-...--|+
T Consensus 367 ~v~~a~G~A~~G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH--~~~ed~a~l~~iP~l 441 (616)
T 3mos_A 367 MVSIAVGCATRNRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQ--MALEDLAMFRSVPTS 441 (616)
T ss_dssp HHHHHHHHHGGGCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGG--CBSSHHHHHHTSTTE
T ss_pred HHHHHHHHHHcCCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCCccccCCCCcc--cCHHHHHHhcCCCCC
Confidence 33333333334443566778999875 356778888899999999988777633 33433 234455544444477
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
.++.- .|+.+++.+++.|.+ .++|++|-
T Consensus 442 ~V~~P--~d~~e~~~~l~~a~~----~~gp~~ir 469 (616)
T 3mos_A 442 TVFYP--SDGVATEKAVELAAN----TKGICFIR 469 (616)
T ss_dssp EEECC--CSHHHHHHHHHHHHT----CCSEEEEE
T ss_pred EEEec--CCHHHHHHHHHHHHh----cCCCEEEE
Confidence 66543 478889888887775 46898764
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=91.23 E-value=0.41 Score=49.04 Aligned_cols=107 Identities=21% Similarity=0.139 Sum_probs=63.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccc---cccCCcc-HHHHHhh
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS---EQFRSDG-IVVKGRA 320 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~---~~~~~~~-ia~~a~a 320 (364)
+|.|.|.+. ++-.+++|..|=|+++ ..-++.-|..-++|+|+|+-+-......... .+....+ ....++.
T Consensus 74 ~A~GyAr~t---gkp~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~ 147 (565)
T 2nxw_A 74 AADAAARYS---STLGVAAVTYGAGAFN---MVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKE 147 (565)
T ss_dssp HHHHHHHHH---TSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTT
T ss_pred HHHHHHHHh---CCCeEEEECCCCCHHH---HHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHh
Confidence 466666543 4445566666777766 4566888888999999998774332211100 0001112 4566666
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
+--...++. +++++.+.+.+|+..+....+|+.|++-
T Consensus 148 ~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 184 (565)
T 2nxw_A 148 ITVAQARLD--DPAKAPAEIARVLGAARAQSRPVYLEIP 184 (565)
T ss_dssp SCSCEEECC--CTTTHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred hheEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 665666664 4555555666666555555789999875
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=91.06 E-value=0.39 Score=49.72 Aligned_cols=105 Identities=16% Similarity=0.063 Sum_probs=64.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.++++..|=|+++ ..-++..|..-++|+|+|+-.-........ .....|....++.+--.
T Consensus 65 aA~GyAr~---tg~~gv~~~TsGpG~~N---~~~gia~A~~~~vPvl~itG~~~~~~~~~~--~~Q~~d~~~~~~~~tk~ 136 (603)
T 4feg_A 65 AAAADAKL---TGKIGVCFGSAGPGGTH---LMNGLYDAREDHVPVLALIGQFGTTGMNMD--TFQEMNENPIYADVADY 136 (603)
T ss_dssp HHHHHHHH---HSSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTTTTSC--CTTCCCCGGGGTTTCSE
T ss_pred HHHHHHHH---hCCceEEEecCCchHHH---HHHHHHHHHHcCCCEEEEecCCcccccCCC--ccccccHHHHhhhhceE
Confidence 46666544 34455666777888876 345688888899999999865432111110 11112445556666556
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..+|. +++++.+.+.+|+..|....||+.|++-
T Consensus 137 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 169 (603)
T 4feg_A 137 NVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIP 169 (603)
T ss_dssp EEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 66664 4445666666666655555799999874
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.18 E-value=1.4 Score=46.19 Aligned_cols=101 Identities=16% Similarity=0.095 Sum_probs=66.0
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|+. +.-++++..+.=.+. -.++++..++..++||++++.+.+++. ..+++ .+.++++-...-
T Consensus 410 ~~~a~GlA~~----Gg~~P~~~t~~~F~~---~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tH--q~~edla~lr~i 480 (651)
T 2e6k_A 410 GAILNGLNLH----GGYRAYGGTFLVFSD---YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTH--QPVEHLMSLRAM 480 (651)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEeHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCcCcc--ccHHHHHHhcCC
Confidence 3456666554 323566665533221 246778889999999999998888654 44554 234555544434
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
.|+.++.- -|..+++.+++.|++. .++|++|-
T Consensus 481 P~l~V~~P--ad~~E~~~~l~~A~~~---~~~Pv~i~ 512 (651)
T 2e6k_A 481 PNLFVIRP--ADAYETFYAWLVALRR---KEGPTALV 512 (651)
T ss_dssp TTCEEECC--SSHHHHHHHHHHHHHC---CSSCEEEE
T ss_pred CCcEEEec--CCHHHHHHHHHHHHHc---CCCCEEEE
Confidence 58877754 3789999999998872 26899874
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=90.10 E-value=1.7 Score=45.82 Aligned_cols=101 Identities=12% Similarity=0.008 Sum_probs=65.9
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|+. +.-++++..+...+. -.++++..++..++||++++-..+++. .++++ .+.++++-...-
T Consensus 415 v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tH--q~~edla~lr~i 485 (669)
T 2r8o_A 415 TAIANGISLH----GGFLPYTSTFLMFVE---YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTH--QPVEQVASLRVT 485 (669)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---TTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCeEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCcc--CCHHHHHHhcCC
Confidence 3455565543 333456666655443 246778889999999999998877653 44554 234455544444
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
.|+.++.- -|..++..+++.|++. .++|++|-
T Consensus 486 P~l~V~~P--ad~~E~~~~l~~a~~~---~~~Pv~i~ 517 (669)
T 2r8o_A 486 PNMSTWRP--CDQVESAVAWKYGVER---QDGPTALI 517 (669)
T ss_dssp TTCEEECC--SSHHHHHHHHHHHHHC---SSSCEEEE
T ss_pred CCCEEEec--CCHHHHHHHHHHHHHh---CCCcEEEE
Confidence 57776653 3788999999998862 36899874
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=89.59 E-value=0.54 Score=48.57 Aligned_cols=107 Identities=15% Similarity=0.110 Sum_probs=65.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.+++|..|=|+++ ..-++..|..-++|+|+|+-+-..........| ..|....++.+--.
T Consensus 84 aA~GyAr~---tgkpgv~~~TsGpG~~N---~~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q--~~d~~~~~~~~tk~ 155 (604)
T 2x7j_A 84 FALGLAKA---KQRPVLLICTSGTAAAN---FYPAVVEAHYSRVPIIVLTADRPHELREVGAPQ--AINQHFLFGNFVKF 155 (604)
T ss_dssp HHHHHHHH---HTSCEEEEECSSHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGSSSCCTT--CCCCTTTTGGGSSC
T ss_pred HHHHHHHh---hCCCEEEEECChhHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCC--cCcHHHHhhhheee
Confidence 46666654 34455677777877776 356688888889999999876543221111111 12344445555445
Q ss_pred EEEEe-CCCH----HHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVD-GNDA----LAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VD-GnD~----~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|. ..+. ..+.+.+++|+..|..+ .||+.|++-
T Consensus 156 ~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 196 (604)
T 2x7j_A 156 FTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVP 196 (604)
T ss_dssp EEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcc
Confidence 66664 2220 12777788888777764 589999875
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.33 E-value=1.4 Score=45.62 Aligned_cols=106 Identities=22% Similarity=0.222 Sum_probs=69.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+. .++-.++++..|=|+++ ..-++..|..-++|+|+|+-+-........ .....|....++.+--.
T Consensus 80 ~A~GyAr~t--gg~~~v~~~TsGpG~~N---~~~~l~~A~~~~vPlvvItg~~p~~~~~~~--~~Q~~d~~~~~~~~tk~ 152 (616)
T 2pan_A 80 MAEGYTRAT--AGNIGVCLGTSGPAGTD---MITALYSASADSIPILCITGQAPRARLHKE--DFQAVDIEAIAKPVSKM 152 (616)
T ss_dssp HHHHHHHHS--TTCCEEEEECSTHHHHT---SHHHHHHHHHTTCCEEEEEEECCGGGTTTT--CTTCCCHHHHHGGGSSE
T ss_pred HHHHHHHhc--CCCceEEEeCCCchHHH---HHHHHHHHHhcCCCEEEEecCCcccccCcc--cccccCHHHHHHHHHHh
Confidence 466665542 02334455666777665 345688888889999999876643322111 11224566777777666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..++. +++++...+++|+..+..+ .||+.|++-
T Consensus 153 ~~~v~--~~~~i~~~l~~A~~~A~~~r~GPV~l~iP 186 (616)
T 2pan_A 153 AVTVR--EAALVPRVLQQAFHLMRSGRPGPVLVDLP 186 (616)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred hcccC--CHHHHHHHHHHHHHHHhcCCCceEEEEcc
Confidence 77774 6778889999999888765 489999874
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.10 E-value=1.4 Score=45.91 Aligned_cols=101 Identities=14% Similarity=0.088 Sum_probs=66.1
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcc-cccccccccCCccHHHHHhhc
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA-ISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a-is~~~~~~~~~~~ia~~a~a~ 321 (364)
+++|+|+|++ .-++++..+++... . .+...++.++..++||++++.+.++. -..+++.+ ..+++-...--
T Consensus 374 ~~~a~G~A~~-----G~rp~~~~~~~F~~-~-a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~--~~d~~~~~~iP 444 (621)
T 2o1s_A 374 VTFAAGLAIG-----GYKPIVAIYSTFLQ-R-AYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQG--AFDLSYLRCIP 444 (621)
T ss_dssp HHHHHHHHHT-----TCEEEEEEETTGGG-G-GHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCB--CSHHHHTTTST
T ss_pred HHHHHHHHHC-----CCEEEEEehHhHHH-H-HHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCc--hHHHHHHhcCC
Confidence 4456666553 24677788888753 2 23334677888999999999887762 23444433 24444433334
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
|+.++.-- |+.+++..++.|++. .++|++|-
T Consensus 445 ~l~v~~P~--d~~e~~~~l~~a~~~---~~~Pv~i~ 475 (621)
T 2o1s_A 445 EMVIMTPS--DENECRQMLYTGYHY---NDGPSAVR 475 (621)
T ss_dssp TCEEECCS--SHHHHHHHHHHHHHC---CSSCEEEE
T ss_pred CCEEEecC--CHHHHHHHHHHHHHc---CCCCEEEE
Confidence 88887643 789999999998873 36899874
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=88.86 E-value=2.1 Score=45.17 Aligned_cols=89 Identities=17% Similarity=0.081 Sum_probs=59.9
Q ss_pred CCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhhcCeEEEEEeCCCHHHH
Q 017890 259 DACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAV 336 (364)
Q Consensus 259 ~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av 336 (364)
-++++.++...+. -.++++..++..++||++++-..+++. .++++ .+..+++-...--|+.++.= -|..++
T Consensus 440 ~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tH--q~~edla~lr~iP~l~V~~P--ad~~e~ 512 (675)
T 1itz_A 440 FVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTH--QPIEHLVSFRAMPNILMLRP--ADGNET 512 (675)
T ss_dssp CEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHSSSSCEEECC--CSHHHH
T ss_pred CEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCc--CcHHHHHHhccCCCeEEEEC--CCHHHH
Confidence 4566666655443 357788889999999999997776653 44554 23445554433346666543 478899
Q ss_pred HHHHHHHHHHhhcCCCcEEEE
Q 017890 337 YTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 337 ~~a~~~A~~~ar~~~~P~LIe 357 (364)
..+++.|++. .++|++|-
T Consensus 513 ~~~l~~a~~~---~~~Pv~i~ 530 (675)
T 1itz_A 513 AGAYKVAVLN---RKRPSILA 530 (675)
T ss_dssp HHHHHHHHHC---TTSCEEEE
T ss_pred HHHHHHHHHh---CCCcEEEE
Confidence 9999988862 36899884
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=88.20 E-value=1.8 Score=45.63 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=64.3
Q ss_pred hHHHHHHHHhhhccCCC-eEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhh
Q 017890 244 PQAVGVAYSLKMEKKDA-CAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~-~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a 320 (364)
++|+|+|+. +.-+ +++..+.+-+. -.++++..++..++||++++-..+++. .++++ .+.++++-...-
T Consensus 423 g~a~GlA~~----Gg~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tH--q~~edla~lr~i 493 (680)
T 1gpu_A 423 AIMNGISAF----GANYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTH--QPIETLAHFRSL 493 (680)
T ss_dssp HHHHHHHHH----CTTCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHhc----CCCceEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCcc--CCHHHHHHhcCC
Confidence 456665543 3235 55555533322 246778889999999999997777653 45555 234555544444
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
-|+.++.= -|..++..+++.|++. .++|++|-
T Consensus 494 P~l~V~~P--ad~~e~~~~l~~A~~~---~~~Pv~i~ 525 (680)
T 1gpu_A 494 PNIQVWRP--ADGNEVSAAYKNSLES---KHTPSIIA 525 (680)
T ss_dssp SSCEEECC--CSHHHHHHHHHHHHHC---SSCCEEEE
T ss_pred CCCEEEec--CCHHHHHHHHHHHHHh---CCCcEEEE
Confidence 57766643 3788999999998862 36899874
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=88.07 E-value=2.1 Score=45.15 Aligned_cols=101 Identities=13% Similarity=0.033 Sum_probs=66.0
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcc--cccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA--ISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a--is~~~~~~~~~~~ia~~a~a 320 (364)
+++|+|+|+. +.-++++..+.+-.. ...+++..++..++||+++....+++ ...+++ .+..+++-...-
T Consensus 416 v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~TH--q~~ed~a~lr~i 486 (663)
T 3kom_A 416 AAIMNGLSLY----GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTH--QPIEHVPSLRLI 486 (663)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCc--CCHHHHHHHhcC
Confidence 4556666653 334567776665542 24567888899999999998777764 345554 233455544444
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
-|+.++.- -|..++..+++.|++ ..++|++|-
T Consensus 487 Pnl~V~~P--ad~~e~~~~l~~A~~---~~~~Pv~ir 518 (663)
T 3kom_A 487 PNLSVWRP--ADTIETMIAWKEAVK---SKDTPSVMV 518 (663)
T ss_dssp TTCEEECC--CSHHHHHHHHHHHHH---CSSCCEEEE
T ss_pred CCcEEEee--CCHHHHHHHHHHHHH---hCCCCEEEE
Confidence 57766653 378889999988886 247899873
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=88.00 E-value=2.4 Score=44.45 Aligned_cols=100 Identities=14% Similarity=-0.050 Sum_probs=66.0
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcc--cccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA--ISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a--is~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|+. +.-++++..+.+-.. ...+.+..++..++||+++....+++ ..++++ .+..+++-...-
T Consensus 395 v~~a~GlA~~----gG~~P~~~~f~~F~~---~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~TH--q~~ed~a~lr~i 465 (632)
T 3l84_A 395 AAINNAFARY----GIFLPFSATFFIFSE---YLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTH--QPIEQLSTFRAM 465 (632)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGG--SCSSHHHHHHHS
T ss_pred HHHHHHHHHc----CCCEEEEEecHHHHH---HHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCC--CCHhHHHHHhcC
Confidence 4556666654 234566666654432 34567888889999999998777764 345554 234455544444
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
-|+.++.- -|..++..+++.|++ .++|++|-
T Consensus 466 P~l~V~~P--~d~~e~~~~l~~A~~----~~~Pv~ir 496 (632)
T 3l84_A 466 PNFLTFRP--ADGVENVKAWQIALN----ADIPSAFV 496 (632)
T ss_dssp SSCEEECC--SSHHHHHHHHHHHHH----CSSCEEEE
T ss_pred CCCEEEec--CCHHHHHHHHHHHHh----CCCCEEEE
Confidence 57777653 378899999998886 57899874
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=87.53 E-value=0.76 Score=46.48 Aligned_cols=107 Identities=21% Similarity=0.066 Sum_probs=65.3
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
-+|.|.|.+. ++..++++..|=|.++ ..-++.-|...++|+|+|+-+-..........|. ..|....++.+--
T Consensus 52 ~~A~Gyar~t---g~~~v~~~tsGpG~~N---~~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~-~~d~~~~~~~~~k 124 (528)
T 1q6z_A 52 GIADGYAQAS---RKPAFINLHSAAGTGN---AMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLT-NVDAANLPRPLVK 124 (528)
T ss_dssp HHHHHHHHHH---TSCEEEEEEHHHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHTTTCTTC-CTTGGGSSTTSCS
T ss_pred HHHHHHHHHh---CCCEEEEEcCChHHHH---HHHHHHHHhhcCCCEEEEeCCCcccccCCCcccc-cccHHHHHHHhhH
Confidence 3566666543 4445666667777775 3456778888899999998765432111111111 0144444554444
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
...++. +++++...+.+|+..+..+. ||+.|++-
T Consensus 125 ~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 159 (528)
T 1q6z_A 125 WSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVP 159 (528)
T ss_dssp CEECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred hhhcCC--CHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 455554 56677778888887777665 69999874
|
| >2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B | Back alignment and structure |
|---|
Probab=86.76 E-value=1.9 Score=41.59 Aligned_cols=98 Identities=19% Similarity=0.120 Sum_probs=59.0
Q ss_pred hhHHHHHHHHhhhccCCCeEEE-EeCCCccccccHHHHHHHH-H--------HcCCCEEEEEEcCCc-ccccccccccCC
Q 017890 243 LPQAVGVAYSLKMEKKDACAVA-YTGDGGTSEGDFHAALNFA-A--------VMEAPVVFICRNNGW-AISTNISEQFRS 311 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~-~~GDGa~~eG~~~EALn~A-a--------~~~LPvIfVV~NNg~-ais~~~~~~~~~ 311 (364)
+++|.|+|++ + -++++. .+++... ..++.+... + ..++||++++.+ ++ +-..+++.+. .
T Consensus 75 v~~a~G~A~~----G-~rp~~~~~f~~F~~---~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~~-~ 144 (341)
T 2ozl_B 75 AGIAVGAAMA----G-LRPICEFMTFNFSM---QAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQC-F 144 (341)
T ss_dssp HHHHHHHHHT----T-CEEEEECSSGGGGG---GGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCCC-C
T ss_pred HHHHHHHHHC----C-CEEEEEeccHHHHH---HHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhhH-H
Confidence 4556666654 2 344554 3888872 244555543 3 278999999986 54 2244444221 1
Q ss_pred ccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 312 DGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 312 ~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
+ +-...--|+.++.- .|+.+.+..++.|++ .++|++|-.
T Consensus 145 -e-a~l~~iP~l~V~~P--sd~~e~~~~l~~a~~----~~~Pv~i~~ 183 (341)
T 2ozl_B 145 -A-AWYGHCPGLKVVSP--WNSEDAKGLIKSAIR----DNNPVVVLE 183 (341)
T ss_dssp -H-HHHHTSTTCEEECC--CSHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred -H-HHhccCCCCEEEEe--CCHHHHHHHHHHHHh----cCCCEEEEE
Confidence 2 22222348877754 389999999999886 368998743
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=86.73 E-value=3.8 Score=43.19 Aligned_cols=100 Identities=11% Similarity=0.001 Sum_probs=64.4
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhhc
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a~ 321 (364)
++|.|+|+. +.-++++.++..-+. -..+++..++..++||++++...+++. .++++ .+.++++-...--
T Consensus 416 ~~a~GlA~~----GG~~P~~~~~~~F~~---~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tH--q~~edla~lr~iP 486 (673)
T 1r9j_A 416 AILNGLDAH----DGIIPFGGTFLNFIG---YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTH--QPVELVAALRAMP 486 (673)
T ss_dssp HHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHHST
T ss_pred HHHHHHHhc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEECCccCcCCCCccc--CCHHHHHHHcCCC
Confidence 355565543 323566666544332 345678889999999999987777643 45555 2345555444445
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
|+.++.= -|..++..+++.|++. .++|++|-
T Consensus 487 ~l~V~~P--ad~~e~~~~l~~a~~~---~~~Pv~i~ 517 (673)
T 1r9j_A 487 NLQVIRP--SDQTETSGAWAVALSS---IHTPTVLC 517 (673)
T ss_dssp TCEEECC--SSHHHHHHHHHHHHHC---TTCCEEEE
T ss_pred CCEEEeC--CCHHHHHHHHHHHHHh---CCCeEEEE
Confidence 7766643 4788999999988862 36899874
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=86.65 E-value=1 Score=46.94 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=64.2
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcc-cccccccccCCccHHHHHhhc
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA-ISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a-is~~~~~~~~~~~ia~~a~a~ 321 (364)
+++|+|+|++ .-++++.++.+... . .+...++.++..++||++++.+.+.. -..+++.+ ..+++-...--
T Consensus 377 ~~~a~G~A~~-----G~rp~~~~~~~F~~-~-a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~--~~d~a~~r~iP 447 (629)
T 2o1x_A 377 VTTAAGMALQ-----GMRPVVAIYSTFLQ-R-AYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNG--VFDLSFLRSIP 447 (629)
T ss_dssp HHHHHHHHHT-----TCEEEEEEEHHHHG-G-GHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCB--CSHHHHTTTST
T ss_pred HHHHHHHHHc-----CCEEEEEecHHHHH-H-HHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCc--cHHHHHHHccC
Confidence 4456666654 24567777776542 1 23334677888999999999887762 23444333 24444333334
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
|+.++.- -|+.+++..++.|++. ++|++|-
T Consensus 448 ~l~v~~P--~d~~e~~~~~~~a~~~----~~Pv~i~ 477 (629)
T 2o1x_A 448 GVRIGLP--KDAAELRGMLKYAQTH----DGPFAIR 477 (629)
T ss_dssp TCEEECC--SSHHHHHHHHHHHHHS----SSCEEEE
T ss_pred CcEEEec--CCHHHHHHHHHHHHhC----CCCEEEE
Confidence 8877754 3789999999999873 6899874
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=86.41 E-value=1.4 Score=44.90 Aligned_cols=106 Identities=15% Similarity=0.075 Sum_probs=63.3
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccccccc---cc--cc-CCccHHHH
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI---SE--QF-RSDGIVVK 317 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~---~~--~~-~~~~ia~~ 317 (364)
-+|.|.|.+ .+ -.++++..|=|+++ ..-++.-|..-++|+|+|+-+......... .. +. ...+....
T Consensus 77 ~~A~GyAr~---tG-~~v~~~tsGpG~~N---~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (570)
T 2vbf_A 77 YMADGYART---KK-AAAFLTTFGVGELS---AINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKM 149 (570)
T ss_dssp HHHHHHHHH---HS-CEEEEEETTHHHHH---HHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHH
T ss_pred HHHHHHHHH---hC-CeEEEEcCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHH
Confidence 356676654 34 44666666777665 456788888889999999976553221100 00 00 11224556
Q ss_pred HhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 318 GRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 318 a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
++.+--...+|. + +++...+++|+..|....+|+.|++-
T Consensus 150 ~~~~tk~~~~v~--~-~~~~~~l~~A~~~A~~~~GPV~l~iP 188 (570)
T 2vbf_A 150 HEPVTAARTLLT--A-ENATYEIDRVLSQLLKERKPVYINLP 188 (570)
T ss_dssp TGGGCSEEEECC--T-TTHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred hhhhEEEEEEEC--c-ccHHHHHHHHHHHHhhCCCCEEEEcc
Confidence 666766677775 3 44555555555555545689999874
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=86.38 E-value=2.7 Score=43.11 Aligned_cols=107 Identities=11% Similarity=0.127 Sum_probs=63.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.|.+ .++-.+++|..|=|+++ ..-++..|..-++|+|+|.-+-....... ......|....++.+--.
T Consensus 64 aAdGyAr~---tG~pgv~~~TsGpG~~N---~~~gia~A~~d~vPll~itG~~p~~~~g~--~~~Qe~d~~~~~~~~tk~ 135 (578)
T 3lq1_A 64 FALGLAKA---SKRPVVLLCTSGTAAAN---YFPAVAEANLSQIPLIVLTADRPHELRNV--GAPQAMDQLHLYGSHVKD 135 (578)
T ss_dssp HHHHHHHH---HCCCEEEEECSSHHHHT---THHHHHHHHHTTCCEEEEEEECCGGGTTS--SCTTCCCCTTTTGGGSSE
T ss_pred HHHHHHHh---hCCCEEEEECCchhhhh---hhHHHHHHHhcCCCeEEEeCCCCHHhhcC--CCCCCcCHhhHHhhheee
Confidence 46666654 35556677777888876 34568888899999999986543211111 111112344445555444
Q ss_pred EEEEe-CCCHHH----HHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVD-GNDALA----VYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VD-GnD~~a----v~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|. ..++.+ +..++++|+..|..+ .||+.|++-
T Consensus 136 ~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP 176 (578)
T 3lq1_A 136 FTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFP 176 (578)
T ss_dssp EEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred EeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECc
Confidence 55553 344332 445677777776665 589999875
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
Probab=85.83 E-value=4.2 Score=43.12 Aligned_cols=101 Identities=17% Similarity=0.108 Sum_probs=63.6
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcc--cccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA--ISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a--is~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|+. +.-++++..+.--+. -...++..++..++||+|++...+++ ...+++. +..+++-...-
T Consensus 440 v~~A~GlA~~----gG~~P~~~tf~~Fs~---f~~~air~~al~~lpVv~v~~~~gigvG~dG~THq--~ied~a~lr~i 510 (690)
T 3m49_A 440 GAAMNGIALH----GGLKTYGGTFFVFSD---YLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHE--PIEQLAALRAM 510 (690)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGC--CSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEecHHHHH---HHHHHHHHHHhcCCCcEEEEECCCcCCCCCCCccC--CHHHHHHHhcC
Confidence 4556666654 223455554422221 12446778899999999999988764 4455542 34455544444
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
-|+.+++- -|..++..+++.|++. .++|++|-
T Consensus 511 Pnl~V~~P--ad~~E~~~~l~~Ai~~---~~~Pv~ir 542 (690)
T 3m49_A 511 PNVSVIRP--ADGNESVAAWRLALES---TNKPTALV 542 (690)
T ss_dssp TTCEEECC--SSHHHHHHHHHHHHHC---SSSCEEEE
T ss_pred CCCEEEee--CCHHHHHHHHHHHHHc---CCCCEEEE
Confidence 57877653 3788999999988862 36899874
|
| >1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B | Back alignment and structure |
|---|
Probab=85.41 E-value=1.9 Score=41.34 Aligned_cols=99 Identities=16% Similarity=0.087 Sum_probs=60.9
Q ss_pred cchhHHHHHHHHhhhccCCCeEEEE-eCCCccccccHHHHHH-HHHH--------cCCCEEEEEEcCCcccccccccccC
Q 017890 241 TQLPQAVGVAYSLKMEKKDACAVAY-TGDGGTSEGDFHAALN-FAAV--------MEAPVVFICRNNGWAISTNISEQFR 310 (364)
Q Consensus 241 ~~lp~AvG~A~A~k~~~~~~~vv~~-~GDGa~~eG~~~EALn-~Aa~--------~~LPvIfVV~NNg~ais~~~~~~~~ 310 (364)
..+++|.|+|++ + -++++.+ ++++.. ..++.+. .++. +++|+++++.+.+ ....+++ .+
T Consensus 63 ~~~~~a~G~A~~----G-~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~G~th--~s 131 (338)
T 1qs0_B 63 GIVGTAVGMGAY----G-LRPVVEIQFADYFY---PASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIYGGQT--HS 131 (338)
T ss_dssp HHHHHHHHHHHH----T-CEEEEECSCGGGCG---GGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSSCCSS--SS
T ss_pred HHHHHHHHHHhC----C-CEEEEEeccHhHHH---HHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCCCccc--cc
Confidence 335567777665 2 2444434 888873 3455553 3432 3599999987655 3333332 22
Q ss_pred CccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 311 SDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 311 ~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
..+++-...-.|+.++.-- |+.+.+..++.|++ .++|++|
T Consensus 132 ~~d~~~l~~iP~l~V~~Ps--d~~e~~~~l~~A~~----~~~Pv~i 171 (338)
T 1qs0_B 132 QSPEAMFTQVCGLRTVMPS--NPYDAKGLLIASIE----CDDPVIF 171 (338)
T ss_dssp CCCHHHHTTSTTCEEECCC--SHHHHHHHHHHHHH----SSSCEEE
T ss_pred ccHHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHh----cCCcEEE
Confidence 3355433333488887654 89999999999886 3689988
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=84.67 E-value=1.6 Score=44.38 Aligned_cols=106 Identities=11% Similarity=0.051 Sum_probs=63.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccccc---cccc---ccCCccHHHHH
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAIST---NISE---QFRSDGIVVKG 318 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~---~~~~---~~~~~~ia~~a 318 (364)
+|.|.|.+. + ..+++|..|=|+++ ..-++..|..-++|+|+|+-+-...... .... .....+..+.+
T Consensus 57 ~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~~~ 129 (563)
T 2vk8_A 57 AADGYARIK---G-MSCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMS 129 (563)
T ss_dssp HHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHHHH
T ss_pred HHHHHHHhh---C-CcEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHHHHh
Confidence 566766553 4 34666667888776 4556778888999999998764422110 0000 00112355667
Q ss_pred hhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 319 RAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 319 ~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
+.+--...++. +++++.+.+.+|+..|....||+.|++-
T Consensus 130 ~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 168 (563)
T 2vk8_A 130 ANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLP 168 (563)
T ss_dssp HTTCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred hhhEEEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 77776677775 4444555555555544444689999874
|
| >1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 | Back alignment and structure |
|---|
Probab=83.11 E-value=5.4 Score=38.88 Aligned_cols=97 Identities=16% Similarity=-0.013 Sum_probs=53.2
Q ss_pred hhHHHHHHHHhhhccCCCeEEEE-eCCCccccccHHHHH-HHHHHc--------CCCEEEEEEcCCcccccccccccCCc
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAY-TGDGGTSEGDFHAAL-NFAAVM--------EAPVVFICRNNGWAISTNISEQFRSD 312 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~-~GDGa~~eG~~~EAL-n~Aa~~--------~LPvIfVV~NNg~ais~~~~~~~~~~ 312 (364)
+++|.|+|++ + -++++.+ ++|... ..++.+ +-++.. ++||++++.+.+..-..+++. ..
T Consensus 111 v~~a~G~A~~----G-~rpv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~hs---~~ 179 (369)
T 1ik6_A 111 LGFAMGMAMA----G-LKPVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHS---NS 179 (369)
T ss_dssp HHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC--------------
T ss_pred HHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCcccc---cc
Confidence 4556666654 2 3445544 888763 234444 335544 999999998776332222222 22
Q ss_pred cHHHHHhh-cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 313 GIVVKGRA-YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 313 ~ia~~a~a-~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
+. ..... -|+.++.- .|+.+.+..++.|++ .++|++|-
T Consensus 180 ~~-a~l~~iPnl~V~~P--sd~~e~~~ll~~A~~----~~~Pv~i~ 218 (369)
T 1ik6_A 180 PE-AIFVHTPGLVVVMP--STPYNAKGLLKAAIR----GDDPVVFL 218 (369)
T ss_dssp HH-HHHHTCTTCEEECC--CSHHHHHHHHHHHHH----SSSCEEEE
T ss_pred HH-HHHcCCCCcEEEec--CCHHHHHHHHHHHHh----CCCCEEEE
Confidence 22 33333 48877754 378999999999886 46899883
|
| >1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* | Back alignment and structure |
|---|
Probab=81.89 E-value=6.4 Score=37.30 Aligned_cols=97 Identities=16% Similarity=0.090 Sum_probs=58.4
Q ss_pred chhHHHHHHHHhhhccCCCeEEEE-eCCCccccccHHHHHH-HHHH--------cCCCEEEEEEcCCcccccccccccCC
Q 017890 242 QLPQAVGVAYSLKMEKKDACAVAY-TGDGGTSEGDFHAALN-FAAV--------MEAPVVFICRNNGWAISTNISEQFRS 311 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~~~~vv~~-~GDGa~~eG~~~EALn-~Aa~--------~~LPvIfVV~NNg~ais~~~~~~~~~ 311 (364)
.+++|.|+|++ + -++++.+ ++++. + ..++.+. .++. .++|+|+++. .++....... ...
T Consensus 63 ~v~~a~G~A~~----G-~~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~--hs~ 131 (324)
T 1umd_B 63 IVGAALGMAAH----G-LRPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRGGHH--HSQ 131 (324)
T ss_dssp HHHHHHHHHHH----T-CEEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSCGGG--SSC
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCCCCc--cch
Confidence 35567777665 2 2444444 88886 2 2455553 2333 6889999887 3443322222 222
Q ss_pred ccHHHHHhh-cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 312 DGIVVKGRA-YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 312 ~~ia~~a~a-~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
.+. ...+. -|+.++.- .|+.+.+..++.|++ .++|++|
T Consensus 132 ~~~-a~~~~iP~~~V~~P--~d~~e~~~~l~~a~~----~~~Pv~i 170 (324)
T 1umd_B 132 SPE-AHFVHTAGLKVVAV--STPYDAKGLLKAAIR----DEDPVVF 170 (324)
T ss_dssp CCH-HHHHTSTTCEEEEC--CSHHHHHHHHHHHHH----CSSCEEE
T ss_pred hHH-HHHhcCCCCEEEEe--CCHHHHHHHHHHHHh----cCCCEEE
Confidence 344 33333 37777754 389999999999986 5789987
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=81.79 E-value=6.7 Score=41.74 Aligned_cols=100 Identities=14% Similarity=0.058 Sum_probs=64.3
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcc--cccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA--ISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a--is~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|+. +.-++++.++.+ |.+ ....++..++..++||+++.-..+++ ..++++ .+..+++-...-
T Consensus 461 v~~AaGlA~~----~G~~Pv~~~f~~--F~~-~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~TH--q~~ed~a~lr~i 531 (711)
T 3uk1_A 461 SAAINGLVLH----GGYKPFGGTFLT--FSD-YSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTH--QSVEHVASLRLI 531 (711)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGG--GHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEEhHH--HHH-HHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCcc--CChhHHHHHhcC
Confidence 4566676652 233456665533 322 23566777888999999999777754 445554 234455544444
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
-|+.+++- -|..++..+++.|++ .++|++|-
T Consensus 532 Pnl~V~~P--ad~~E~~~~l~~Ai~----~~~Pv~ir 562 (711)
T 3uk1_A 532 PNLDVWRP--ADTVETAVAWTYAVA----HQHPSCLI 562 (711)
T ss_dssp TTCEEECC--SSHHHHHHHHHHHHH----SSSCEEEE
T ss_pred CCCEEEec--CCHHHHHHHHHHHHh----cCCCEEEE
Confidence 47777653 378899999998886 57899873
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
Probab=81.22 E-value=2.4 Score=42.92 Aligned_cols=106 Identities=14% Similarity=0.067 Sum_probs=62.3
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccc---cc---cccCCccHHHH
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTN---IS---EQFRSDGIVVK 317 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~---~~---~~~~~~~ia~~ 317 (364)
-+|.|.|.+. + -.++++..|=|.++ ..-++.-|..-++|+|+|+-+-....... .. ......+..+.
T Consensus 57 ~~A~Gyar~t---g-~~v~~~tsGpG~~N---~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~~ 129 (552)
T 1ovm_A 57 YAADGYARCK---G-FAALLTTFGVGELS---AMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHM 129 (552)
T ss_dssp HHHHHHHHHH---S-CEEEEEETTHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHH
T ss_pred HHHHHHHHhh---C-CcEEEEccCCcHHH---HHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHHH
Confidence 3577777664 3 34677777877765 34568888889999999997644321100 00 00011134556
Q ss_pred HhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 318 GRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 318 a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
++.+--...+|.- +++.+.+++|+..+....||+.|++-
T Consensus 130 ~~~~tk~~~~v~~---~~~~~~i~~A~~~a~~~~GPV~l~iP 168 (552)
T 1ovm_A 130 SEPITVAQAVLTE---QNACYEIDRVLTTMLRERRPGYLMLP 168 (552)
T ss_dssp TGGGCSEEEECCT---TTHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHhheeEEEEEcc---ccHHHHHHHHHHHHHhCCCCEEEEee
Confidence 6667666777752 34444455555444444589999874
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=80.08 E-value=7.6 Score=41.23 Aligned_cols=101 Identities=11% Similarity=0.028 Sum_probs=62.8
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcc--cccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWA--ISTNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~a--is~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|+. +.-++++..+..=+. ....++..++..++||+|+....+++ ..++++ .+.++++-...-
T Consensus 445 v~~A~GlA~~----gG~~Pv~~tF~~F~d---~~~~~ir~~al~~lpvv~v~thdg~gvG~dG~TH--q~ied~a~lr~i 515 (700)
T 3rim_A 445 GAILSGIVLH----GPTRAYGGTFLQFSD---YMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTH--QPIEHLSALRAI 515 (700)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--SCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEecHHHHH---HHHHHHHHhcCCCCCEEEEEeCCCcccCCCCCcc--CChhHHHHHhcC
Confidence 3455666554 233445543322221 12345778899999999999877764 445555 234556554444
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCC--CcEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEK--RPVLVE 357 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~--~P~LIe 357 (364)
-|+.+++= -|..++..+++.|++. .+ +|++|-
T Consensus 516 Pnl~V~~P--ad~~e~~~~l~~Ai~~---~~~~~Pv~ir 549 (700)
T 3rim_A 516 PRLSVVRP--ADANETAYAWRTILAR---RNGSGPVGLI 549 (700)
T ss_dssp TTCEEECC--SSHHHHHHHHHHHHTT---TTCSSCEEEE
T ss_pred CCCEEEeC--CCHHHHHHHHHHHHHc---cCCCCCEEEE
Confidence 57777653 3788999999988863 34 699874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 364 | ||||
| d2bfda1 | 395 | c.36.1.11 (A:6-400) Branched-chain alpha-keto acid | 3e-57 | |
| d1w85a_ | 365 | c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, Pd | 1e-48 | |
| d1qs0a_ | 407 | c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B | 2e-46 | |
| d1umda_ | 362 | c.36.1.11 (A:) Branched-chain alpha-keto acid dehy | 2e-42 | |
| d2ozla1 | 361 | c.36.1.11 (A:1-361) E1-beta subunit of pyruvate de | 4e-40 | |
| d1itza1 | 338 | c.36.1.10 (A:10-347) Transketolase (TK), PP module | 8e-05 | |
| d1r9ja2 | 336 | c.36.1.10 (A:1-336) Transketolase (TK), PP module | 3e-04 | |
| d2ieaa2 | 415 | c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 com | 0.002 |
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Score = 189 bits (480), Expect = 3e-57
Identities = 137/274 (50%), Positives = 183/274 (66%)
Query: 84 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQ 143
FPG + ++ FI + +P +RV+D G++I S+ + KE +K+Y M L
Sbjct: 4 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLN 63
Query: 144 VMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQ 203
MD +LYE+QRQGR SFY+T GEE ++GSAAAL D + Q RE GVL++R Y L+
Sbjct: 64 TMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLEL 123
Query: 204 FANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 263
F Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K + +
Sbjct: 124 FMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVI 183
Query: 264 AYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323
Y G+G SEGD HA NFAA +E P++F CRNNG+AIST SEQ+R DGI +G YGI
Sbjct: 184 CYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGI 243
Query: 324 RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357
SIRVDGND AVY A + AR A++E +P L+E
Sbjct: 244 MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIE 277
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Length = 365 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Score = 166 bits (420), Expect = 1e-48
Identities = 100/258 (38%), Positives = 142/258 (55%), Gaps = 9/258 (3%)
Query: 100 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159
E ++ P F++L++ GE++ ++S E ++ MV +++D RQGR
Sbjct: 11 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 70
Query: 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGR 219
FY T G+EA I S AL +DFILP YR+ ++W G L Q F +G
Sbjct: 71 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLF----SRGH 122
Query: 220 QMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAA 279
+ +N + I Q QA GVA LKM K A A+ YTGDGGTS+GDF+
Sbjct: 123 FHGNQIP-EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 181
Query: 280 LNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTA 339
+NFA +AP +F+ +NN +AIST + +Q + + K A GI I+VDG D LAVY A
Sbjct: 182 INFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAA 241
Query: 340 VQAAREMAISEKRPVLVE 357
V+AARE AI+ + P L+E
Sbjct: 242 VKAARERAINGEGPTLIE 259
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Length = 407 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Score = 161 bits (407), Expect = 2e-46
Identities = 98/259 (37%), Positives = 143/259 (55%), Gaps = 2/259 (0%)
Query: 100 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFS 159
++++ RVLD+ G+ G + + ++ + M+ ++ DS + AQRQ + S
Sbjct: 45 DTADLSYSLVRVLDEQGDAQ-GPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMS 103
Query: 160 FYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGR 219
FY+ ++GEEAI G A AL+ D P YR+ +L+ R +L + Q+ +N+ D KGR
Sbjct: 104 FYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGR 163
Query: 220 QMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAA 279
Q+PI Y ++ + TIS +ATQ QAVG A + ++ A A+ GDG T+E DFH A
Sbjct: 164 QLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTA 223
Query: 280 LNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVV-KGRAYGIRSIRVDGNDALAVYT 338
L FA V APV+ NN WAIST + +G GI S+RVDGND +AVY
Sbjct: 224 LTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYA 283
Query: 339 AVQAAREMAISEKRPVLVE 357
A + A E A P L+E
Sbjct: 284 ASRWAAERARRGLGPSLIE 302
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Score = 149 bits (376), Expect = 2e-42
Identities = 103/263 (39%), Positives = 141/263 (53%), Gaps = 6/263 (2%)
Query: 96 RFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQ 155
RF + E R++ + GE + + E ++Y M+ +++D R
Sbjct: 2 RFETFTEEP----IRLIGEEGEWLGDFPLD-LEGEKLRRLYRDMLAARMLDERYTILIRT 56
Query: 156 GRFSFYLTTIGEEAINIGSAAALSAD-DFILPQYREPGVLLWRGYTLQQFANQVFANKAD 214
G+ SF G EA + A A+ D++ P YR+ G+ L G L++ Q+ A KAD
Sbjct: 57 GKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKAD 116
Query: 215 DGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEG 274
KGRQMP H GSK LN+ T++SPIA+ +P A G A S+K+ + AV GDG TSEG
Sbjct: 117 PNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEG 176
Query: 275 DFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDAL 334
D++A +NFAAV AP VFI NN +AIS + Q S I K A+GI VDG D L
Sbjct: 177 DWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVL 236
Query: 335 AVYTAVQAAREMAISEKRPVLVE 357
A Y V+ A E A + P LVE
Sbjct: 237 ASYYVVKEAVERARRGEGPSLVE 259
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Score = 143 bits (361), Expect = 4e-40
Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 5/240 (2%)
Query: 126 QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGR-FSFYLTTIGEEAINIGSAAALSADDFI 184
+++E +K Y M T++ M+ + +Q F G+EA +G A ++ D +
Sbjct: 26 VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 85
Query: 185 LPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLP 244
+ YR G RG ++++ ++ K KG+ +H +K N+ + + Q+P
Sbjct: 86 ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 143
Query: 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTN 304
G+A + K KD + GDG ++G A N AA+ + P +FIC NN + + T+
Sbjct: 144 LGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTS 203
Query: 305 ISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364
+ + R I +RVDG D L V A + A S K P+L+E++
Sbjct: 204 VERA--AASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYH 261
|
| >d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Maize (Zea mays) [TaxId: 4577]
Score = 41.7 bits (97), Expect = 8e-05
Identities = 33/192 (17%), Positives = 68/192 (35%), Gaps = 16/192 (8%)
Query: 181 DDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISS-PI 239
D F+L + + + + K G + P H + + + +++ P+
Sbjct: 61 DRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPL 120
Query: 240 ATQLPQAVGVAYSLKM----------EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAP 289
+ AVG+A + K E D GDG EG + A + A
Sbjct: 121 GQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLG 180
Query: 290 VVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIR-VDGNDALA-VYTAVQAAREMA 347
+ ++ +E ++ + + A G +I +GN + A++ A+
Sbjct: 181 KLIAFYDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKA-- 238
Query: 348 ISEKRPVLVEVR 359
+P L++V
Sbjct: 239 -VTDKPTLIKVT 249
|
| >d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Leishmania mexicana mexicana [TaxId: 44270]
Score = 40.2 bits (93), Expect = 3e-04
Identities = 32/186 (17%), Positives = 55/186 (29%), Gaps = 10/186 (5%)
Query: 181 DDFILPQYR----EPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITIS 236
D F++ + +L GY L + F G ++ +
Sbjct: 58 DRFVMSNGHGCALQYALLHMAGYNLTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLG 117
Query: 237 SPIATQLPQAVGVAYSLK------MEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPV 290
IA + A+ A+ D Y GDG EG AL+ A +
Sbjct: 118 QGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEK 177
Query: 291 VFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISE 350
+ + ++ + + ++ K A G I V D A A
Sbjct: 178 LIVIYDSNYISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKATKG 237
Query: 351 KRPVLV 356
K ++V
Sbjct: 238 KPKMIV 243
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} Length = 415 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Score = 37.5 bits (86), Expect = 0.002
Identities = 25/166 (15%), Positives = 44/166 (26%), Gaps = 13/166 (7%)
Query: 181 DDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIA 240
D + Q ++ L+ Q + Y KL P
Sbjct: 79 GDLVYFQGH-ISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTV 137
Query: 241 TQLPQAVGVAYSLKMEK----------KDACAVAYTGDGGTSEGDFHAALNFAAVME-AP 289
+ +G Y K K A+ GDG E + A+ A +
Sbjct: 138 SMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDN 197
Query: 290 VVFICRNNGWAISTNISEQFRSDGIVVKG-RAYGIRSIRVDGNDAL 334
+VF+ N + ++ + + G I+V
Sbjct: 198 LVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRW 243
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 364 | |||
| d2bfda1 | 395 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d1qs0a_ | 407 | 2-oxoisovalerate dehydrogenase (E1B), PP module {P | 100.0 | |
| d1umda_ | 362 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d1w85a_ | 365 | Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st | 100.0 | |
| d2ozla1 | 361 | E1-beta subunit of pyruvate dehydrogenase (PP modu | 100.0 | |
| d2r8oa2 | 331 | Transketolase (TK), PP module {Escherichia coli [T | 99.93 | |
| d1gpua1 | 335 | Transketolase (TK), PP module {Baker's yeast (Sacc | 99.92 | |
| d1r9ja2 | 336 | Transketolase (TK), PP module {Leishmania mexicana | 99.91 | |
| d1itza1 | 338 | Transketolase (TK), PP module {Maize (Zea mays) [T | 99.9 | |
| d2ieaa2 | 415 | Pyruvate dehydrogenase E1 component, PP module {Es | 99.78 | |
| d2djia3 | 229 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 99.73 | |
| d1q6za3 | 183 | Benzoylformate decarboxylase {Pseudomonas putida [ | 99.71 | |
| d1ybha3 | 208 | Acetohydroxyacid synthase catalytic subunit {Thale | 99.71 | |
| d2ihta3 | 198 | Carboxyethylarginine synthase {Streptomyces clavul | 99.69 | |
| d2ez9a3 | 228 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 99.68 | |
| d1t9ba3 | 227 | Acetohydroxyacid synthase catalytic subunit {Baker | 99.66 | |
| d1ozha3 | 192 | Catabolic acetolactate synthase {Klebsiella pneumo | 99.65 | |
| d1pvda3 | 196 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 99.64 | |
| d2ji7a3 | 183 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 99.62 | |
| d1ovma3 | 196 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 99.61 | |
| d1zpda3 | 204 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 99.6 | |
| d2c42a2 | 447 | Pyruvate-ferredoxin oxidoreductase, PFOR, domains | 97.62 | |
| d1zpda2 | 186 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 95.93 | |
| d2djia2 | 184 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 95.67 | |
| d2ji7a2 | 188 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 95.52 | |
| d1ozha2 | 181 | Catabolic acetolactate synthase {Klebsiella pneumo | 95.38 | |
| d1pvda2 | 180 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 95.32 | |
| d1t9ba2 | 175 | Acetohydroxyacid synthase catalytic subunit {Baker | 94.91 | |
| d2ihta2 | 186 | Carboxyethylarginine synthase {Streptomyces clavul | 94.86 | |
| d2ez9a2 | 174 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 94.84 | |
| d1ybha2 | 195 | Acetohydroxyacid synthase catalytic subunit {Thale | 93.97 | |
| d1q6za2 | 180 | Benzoylformate decarboxylase {Pseudomonas putida [ | 92.82 | |
| d2c42a1 | 257 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain I | 89.76 | |
| d1r9ja1 | 190 | Transketolase (TK), Pyr module {Leishmania mexican | 88.31 | |
| d1ovma2 | 178 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 88.25 | |
| d1gpua2 | 197 | Transketolase (TK), Pyr module {Baker's yeast (Sac | 86.56 | |
| d2r8oa1 | 195 | Transketolase (TK), Pyr module {Escherichia coli [ | 83.37 | |
| d2ozlb1 | 192 | E1-beta subunit of pyruvate dehydrogenase, Pyr mod | 80.49 | |
| d1qs0b1 | 204 | 2-oxoisovalerate dehydrogenase (E1B), Pyr module { | 80.11 |
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-73 Score=565.34 Aligned_cols=282 Identities=49% Similarity=0.855 Sum_probs=276.6
Q ss_pred cccCCCCccCccccccccCCCCCCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 017890 82 LDFPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFY 161 (364)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~ 161 (364)
..|||++++|+.+++|..|.....+|+|||||.||+++++...+.+|+|+++++||.|+++|.||+++.++++||+|+||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~ld~~g~~~~~~~~~~ls~e~l~~~Yr~M~~~R~~e~~~~~l~~~G~i~~~ 81 (395)
T d2bfda1 2 PQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFY 81 (395)
T ss_dssp CCCTTCCCCCCSSCCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCC
T ss_pred CCCCCCCCccccccccCCCccCCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 36899999999999999998888999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCccc
Q 017890 162 LTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIAT 241 (364)
Q Consensus 162 ~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~ 241 (364)
+++.||||++||++++|+++||+|++||+|++++++|++++++|++++|+.+++++|+++++|+++++.++++.++++|+
T Consensus 82 ~~~~GqEA~~vg~~~al~~~D~~~~~yR~h~~~la~G~~~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg~ 161 (395)
T d2bfda1 82 MTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLAT 161 (395)
T ss_dssp CCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTT
T ss_pred cCCCChHHHHHHHHHHcCCCCeeccccchhHhhhhhhCCHHHHHHHHhhcccCccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 242 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 242 ~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
++|+|+|+|+|.|+++.+++++|++|||++++|.|||+||+|+.|+|||||||+||+|+|+|+..+++..+++++++++|
T Consensus 162 ~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~yaist~~~~~~~~~~i~~ra~~~ 241 (395)
T d2bfda1 162 QIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 241 (395)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGG
T ss_pred cccHHHHHHHHhhhcCcccccccccCCCCccchhHHHHHHHHhhcCCceEEEEEecccccccccchhhcchhHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
|+++++|||||+++|++++++|++++|++++|+|||++|||+
T Consensus 242 gi~~~~vDG~Dv~aV~~a~~~A~~~~R~g~gP~lIE~~TyR~ 283 (395)
T d2bfda1 242 GIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 283 (395)
T ss_dssp TCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCC
T ss_pred ccceeEEecCcHHHHHHHHHHhhhhhhccCCceEEEEeeecC
Confidence 999999999999999999999999999999999999999996
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=9e-69 Score=536.07 Aligned_cols=259 Identities=38% Similarity=0.528 Sum_probs=250.1
Q ss_pred CCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcCCCcEE
Q 017890 105 RVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFI 184 (364)
Q Consensus 105 ~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~~~D~v 184 (364)
..+++||||.||+++.+ ..+++++|+|+++||.|+++|.||+++.++||||+|+||+++.||||++||++.+|+++||+
T Consensus 50 ~~~~vrvld~~g~~~~~-~~~~l~~e~l~~~yr~M~~~R~~d~~~~~l~rqG~i~~~~~~~GqEA~~vg~~~aL~~~D~~ 128 (407)
T d1qs0a_ 50 SYSLVRVLDEQGDAQGP-WAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMC 128 (407)
T ss_dssp HTSCBCCBCTTSCBCSG-GGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEE
T ss_pred ccCeEEEECCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCChHHHHHHHHHhCCCCCEE
Confidence 35889999999999876 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEE
Q 017890 185 LPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVA 264 (364)
Q Consensus 185 ~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~ 264 (364)
|++||+||+++++|+++.++|++++|+.+|+++|++||+|++.++.|+++.++++|+|+|+|+|+|+|.|+++.++++||
T Consensus 129 f~~yR~~g~~larG~~~~~~~~e~~g~~~g~~~Gr~~~~h~~~~~~~~~~~s~~vg~q~p~AvG~A~a~k~~~~~~v~v~ 208 (407)
T d1qs0a_ 129 FPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASA 208 (407)
T ss_dssp ECCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred EecccCHHHHHHHHhhHHHHHHHHhhccCCCCCCCCccccccccccceeccccccccccchhhhhHHHHhhccCcceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccC-CccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHH
Q 017890 265 YTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFR-SDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAA 343 (364)
Q Consensus 265 ~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~-~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A 343 (364)
++|||+++||+|||+||+|+.|+|||||||+||+|+|+|+...+.. ...+++++++||+++++|||||+++||+++++|
T Consensus 209 ~~GDGa~~eG~f~EalN~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~ra~~~Gi~~~~VDGnD~~avy~a~~~A 288 (407)
T d1qs0a_ 209 WIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWA 288 (407)
T ss_dssp EEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHhccCcceEEEEEEecccccccchhhhccchhHHHHHHhcCcceEEeccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876544 567999999999999999999999999999999
Q ss_pred HHHhhcCCCcEEEEEEeeccC
Q 017890 344 REMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 344 ~~~ar~~~~P~LIea~T~R~~ 364 (364)
++++|++++|+|||++|||+.
T Consensus 289 ~e~aR~g~gP~lIE~~TyR~~ 309 (407)
T d1qs0a_ 289 AERARRGLGPSLIEWVTYRAG 309 (407)
T ss_dssp HHHHHTTSCCEEEEEECCCCS
T ss_pred HHHHhcCCCceEEEEeeecCC
Confidence 999999999999999999973
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2e-65 Score=505.69 Aligned_cols=257 Identities=39% Similarity=0.568 Sum_probs=250.0
Q ss_pred CeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcCCC-cEEE
Q 017890 107 PCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSAD-DFIL 185 (364)
Q Consensus 107 ~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~~~-D~v~ 185 (364)
..+||||++|+++.+ ..+++|+|+++++|+.|+++|.||+++.++++||+++|+|++.||||++||++.+|+++ ||+|
T Consensus 9 ~~~r~l~~~g~~~~~-~~~~ls~e~l~~~yr~M~~~R~~ee~~~~l~~~g~~~~~~~~~GqEA~~vg~~~al~~~~D~~~ 87 (362)
T d1umda_ 9 EPIRLIGEEGEWLGD-FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVF 87 (362)
T ss_dssp SCBCCBCTTSCBCCS-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTSEEE
T ss_pred CceEEECCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcceeeCCCCHHHHHHHHHHHcCCCCCeEE
Confidence 458999999999875 46899999999999999999999999999999999999999999999999999999996 9999
Q ss_pred ccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEE
Q 017890 186 PQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAY 265 (364)
Q Consensus 186 ~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~ 265 (364)
++||+|++++++|.+++++|++++|+.+|+++|+++++|+.+++.++++.++++|.++|+|+|+|+|.|+++.+.++||+
T Consensus 88 ~~yR~h~~~la~G~~~~~~~ae~~gk~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a~k~~~~~~v~v~~ 167 (362)
T d1umda_ 88 PYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCT 167 (362)
T ss_dssp CCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred eccccHHHHHHHHhhHHHHHHHHhcccCCCcccccccccccccccCcccccccccccchHHHHHHHhhhcccccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHH
Q 017890 266 TGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAARE 345 (364)
Q Consensus 266 ~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~ 345 (364)
+|||+++||.|||+||+|+.|+|||||||+||+|+++|+..++....++.+++++||+++++|||||+++|++++++|++
T Consensus 168 ~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~~~vDGnDv~~v~~a~~~Ai~ 247 (362)
T d1umda_ 168 FGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVE 247 (362)
T ss_dssp EETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHH
T ss_pred ccCCcccCCchHHHHHHhhhccCCeeeeeeecccccccccccccccchhhhhhhhheeeeeEeccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HhhcCCCcEEEEEEeeccC
Q 017890 346 MAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 346 ~ar~~~~P~LIea~T~R~~ 364 (364)
++|++++|+|||++|||+.
T Consensus 248 ~~R~g~gP~lIE~~tyR~~ 266 (362)
T d1umda_ 248 RARRGEGPSLVELRVYRYG 266 (362)
T ss_dssp HHHTTCCCEEEEEECCCCS
T ss_pred HHHhcCCCEEEEccccccc
Confidence 9999999999999999974
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=4.3e-65 Score=503.69 Aligned_cols=261 Identities=37% Similarity=0.572 Sum_probs=244.6
Q ss_pred CccccccccCCCCCCCCeeEEecCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCchhHH
Q 017890 91 YTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAI 170 (364)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~rv~~~~g~~~~~~~~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~ 170 (364)
|+.+++... +.+|+|||||+||+++++...|++|+|+++++||.|+++|.||+++.++++||+|+|||++.||||+
T Consensus 6 ~~~~~~~~~----~~~~~~~~l~~~g~~~~~~~~p~ls~e~l~~~yr~M~l~R~~e~~~~~l~~qG~ig~~h~~~GqEa~ 81 (365)
T d1w85a_ 6 FAEQLEKVA----EQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEAS 81 (365)
T ss_dssp HHHHHHHHH----HTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHH
T ss_pred hhhhhhhhh----ccCCeEEEECCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCChHHH
Confidence 777777432 3689999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCcEEEccCCchhHHHhcCCCHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHH
Q 017890 171 NIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVA 250 (364)
Q Consensus 171 ~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A 250 (364)
+||++.+|+++||++++||+|+++|++|+++.+++.+++|+..+ .|.+ +..++++.++++|+++|+|+|+|
T Consensus 82 ~vg~~~~l~~~D~i~~~yR~hg~~la~G~~~~~~~~~~~G~~~g--------~~~~-~~~~~~~~~~ivG~~~p~AvG~A 152 (365)
T d1w85a_ 82 QIASHFALEKEDFILPGYRDVPQIIWHGLPLYQAFLFSRGHFHG--------NQIP-EGVNVLPPQIIIGAQYIQAAGVA 152 (365)
T ss_dssp HHHHHHTCCTTCEEECCSSCHHHHHHTTCCHHHHHHHHHTCGGG--------GCCC-TTCCBCCCCCSTTHHHHHHHHHH
T ss_pred HHHHHHhCCCcCEeeecccchheeeecCCCHHHHHHhhCCCCCc--------cCCC-CCceeeccccccCccccchhhHH
Confidence 99999999999999999999999999999999999998875432 2332 34678888999999999999999
Q ss_pred HHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeC
Q 017890 251 YSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG 330 (364)
Q Consensus 251 ~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDG 330 (364)
+|.|+++.++++||++|||++++|.|||+||+|+.|+|||||||+||+|+|+||...+....++++++.+||+++++|||
T Consensus 153 ~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~~aist~~~~~~~~~~~~~r~~~~Gi~~~~vDG 232 (365)
T d1w85a_ 153 LGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDG 232 (365)
T ss_dssp HHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEET
T ss_pred hhhhhcccCCceeeeccCCcccchhHHHHHHHhhhcccCceEEEEEecccccccccccccccchhhhcccccCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCcEEEEEEeeccC
Q 017890 331 NDALAVYTAVQAAREMAISEKRPVLVEVRLNFLW 364 (364)
Q Consensus 331 nD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~~ 364 (364)
||+.+|++++++|++++|++++|+|||++|||+.
T Consensus 233 ~D~~~v~~a~~~A~~~~R~g~gP~lie~~tyR~~ 266 (365)
T d1w85a_ 233 MDPLAVYAAVKAARERAINGEGPTLIETLCFRYG 266 (365)
T ss_dssp TCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSS
T ss_pred chhHHHHHHHHHHHHHhhcCCccEEEEeeccccc
Confidence 9999999999999999999999999999999973
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-60 Score=471.51 Aligned_cols=237 Identities=26% Similarity=0.407 Sum_probs=226.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccCCchhHHHHHHHhhcCCCcEEEccCCchhHHHhcCCCHH
Q 017890 124 FQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRF-SFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQ 202 (364)
Q Consensus 124 ~~~~s~e~l~~ly~~M~~~R~~D~~~~~~~rqGri-~f~~~~~GqEa~~vg~a~aL~~~D~v~~~yR~~g~ll~rG~~~~ 202 (364)
.+.|++|+++++||.|+++|.||+++.++++||+| +|+|++.||||++||++.+|+++||+|++||+|+++|++|++++
T Consensus 24 ~~~lske~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~h~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~ 103 (361)
T d2ozla1 24 TTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVR 103 (361)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcccccCCCCHHHHHHHHHHhCCccCEecccccchheeeeecccch
Confidence 45799999999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHH
Q 017890 203 QFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNF 282 (364)
Q Consensus 203 ~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~ 282 (364)
++|++++|+.+++++|+++++|..+ .|+++.++++|+++|+|+|+|+|.|+++.+++|+|++|||+++||.|||+||+
T Consensus 104 ~~~ae~~gk~~g~~~G~~~~~h~~~--~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v~~~~~GDGa~~eG~f~Ealn~ 181 (361)
T d2ozla1 104 EILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNM 181 (361)
T ss_dssp HHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHH
T ss_pred hhhhhccCCcccccccccccccccc--ccccCccccccccchhHHHHHHHhhhccCCCeEEEEecCCCccCcchhhhhhh
Confidence 9999999999999999999999875 47899999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 283 AAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 283 Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
|+.|+|||||||+||+|+++|+...+....++.++ ++|+++++|||||+++|++++++|++++|++++|+|||++|||
T Consensus 182 A~~~~lPvifv~eNN~yaist~~~~~~~~~~~~~~--~~~~~~~~vdGnD~~av~~a~~~A~~~~R~g~gP~liE~~TyR 259 (361)
T d2ozla1 182 AALWKLPCIFICENNRYGMGTSVERAAASTDYYKR--GDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYR 259 (361)
T ss_dssp HHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGT--TTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred hhhccCceEEEEEeCCcccCCCchhcccccccccc--ccccceEEeccCCchHHHHHHHHHHHHHhccCCCEEEEEeeec
Confidence 99999999999999999999999888777776554 6789999999999999999999999999999999999999999
Q ss_pred cC
Q 017890 363 LW 364 (364)
Q Consensus 363 ~~ 364 (364)
++
T Consensus 260 ~~ 261 (361)
T d2ozla1 260 YH 261 (361)
T ss_dssp SS
T ss_pred CC
Confidence 74
|
| >d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=2.3e-25 Score=216.13 Aligned_cols=171 Identities=25% Similarity=0.355 Sum_probs=141.3
Q ss_pred CcEEEccCCchhH------HHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCC-cccccccCCCcccchhHHHHHHHH
Q 017890 181 DDFILPQYREPGV------LLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYS 252 (364)
Q Consensus 181 ~D~v~~~yR~~g~------ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~A 252 (364)
.|.++.+ -+|+. +...|+ ...+.|..+.. .|+.+++|+... .+++...+|+||++++.|+|+|+|
T Consensus 56 rDrfilS-kGH~~~~~Ya~l~~~G~~~~~e~l~~f~~------~gs~~~ghp~~~~~~gve~stGsLG~Gl~~avG~Ala 128 (331)
T d2r8oa2 56 RDRFVLS-NGHGSMLIYSLLHLTGYDLPMEELKNFRQ------LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIA 128 (331)
T ss_dssp CCEEEES-SGGGHHHHHHHHHHHTCSCCHHHHTTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHH
T ss_pred CCeEEEe-ccchHHHHHHHHHHhCCCCCHHHHHhcCC------CCCCCCCCCCcCcCCCcccCcCchhhhhHHHHHHHHH
Confidence 4765554 24443 334685 44455555542 478899999864 467888999999999999999999
Q ss_pred hhhcc----------CCCeEEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCccHHHHHhhc
Q 017890 253 LKMEK----------KDACAVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 253 ~k~~~----------~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~ 321 (364)
.|+.+ .++.|+|++|||+++||.+|||+++|+.++| ++|+|+++|++++.++++... .+++.+++++|
T Consensus 129 ~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~wEA~~~A~~~kL~nLi~i~D~N~~~~~g~~~~~~-~~~~~~rf~af 207 (331)
T d2r8oa2 129 EKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAY 207 (331)
T ss_dssp HHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHT
T ss_pred HHHHhhhhccccccccCceEEEecccccccccchhHhhhhcchhcccceeeHHhhhhhcccccccccc-chhHHHHHHHc
Confidence 98743 3678999999999999999999999999999 899999999999999887665 57899999999
Q ss_pred CeEEEE-EeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 322 GIRSIR-VDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 322 G~~~~~-VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
||.+++ +||||..++.+|+.+|.+ ..++|++|.|+|..
T Consensus 208 Gw~vi~~~dghd~~~i~~A~~~a~~---~~~kP~~Ii~~Tik 246 (331)
T d2r8oa2 208 GWHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTII 246 (331)
T ss_dssp TCEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCT
T ss_pred CCeeecccccchHHHHHHHHHHHHh---hcCCCccceeeeee
Confidence 999985 799999999999988865 36799999999974
|
| >d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=4e-24 Score=207.57 Aligned_cols=160 Identities=22% Similarity=0.303 Sum_probs=131.4
Q ss_pred HHHhcCC-CHHHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhhc----------cCCCe
Q 017890 193 VLLWRGY-TLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKME----------KKDAC 261 (364)
Q Consensus 193 ~ll~rG~-~~~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~~----------~~~~~ 261 (364)
++...|+ ...+.|..|+. .|+.+++|+...-+++...+||||++++.|+|+|+|.|+. ..++.
T Consensus 75 ~l~~~G~~~~~e~L~~fr~------~gs~~~ghp~~~~pgie~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~ 148 (335)
T d1gpua1 75 MLHLTGYDLSIEDLKQFRQ------LGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNY 148 (335)
T ss_dssp HHHHTTCSCCHHHHTTTTC------TTCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCC
T ss_pred HHHHhCCCCCHHHHHhccc------CCCCCCCCCCCCCCCeEeCCCChhHHHHHHHHHHHHhHhhhcccccCCcCCCCCc
Confidence 3445785 34444444442 5788999998766788889999999999999999999852 34688
Q ss_pred EEEEeCCCccccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeC--CCHHHHHH
Q 017890 262 AVAYTGDGGTSEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG--NDALAVYT 338 (364)
Q Consensus 262 vv~~~GDGa~~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDG--nD~~av~~ 338 (364)
|+|++|||+++||..|||+.+|+.++| ++|+|+++|+.+++.++.... .+++.+++++|||++++||| +|..++..
T Consensus 149 v~~l~GDGel~EG~~~EA~~~A~~~~L~NLi~i~D~N~~~~dg~~~~~~-~~~~~~~f~a~GW~vi~vdg~~~d~~~~~~ 227 (335)
T d1gpua1 149 TYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEAYGWEVLYVENGNEDLAGIAK 227 (335)
T ss_dssp EEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEESCTTTCHHHHHH
T ss_pred EEEEecchhhchhhhhhhHhHhhhhccCCEEEEEecccccccccccccc-cCCHHHHHHhCCCcEEEEcCCchhHHHHHH
Confidence 999999999999999999999999999 999999999999998876554 47899999999999999985 45666666
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeec
Q 017890 339 AVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 339 a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
++.++.. ..++|++|.|+|..
T Consensus 228 ~~~~~~~---~~~KPt~Iia~Tik 248 (335)
T d1gpua1 228 AIAQAKL---SKDKPTLIKMTTTI 248 (335)
T ss_dssp HHHHHHH---CTTSCEEEEEECCT
T ss_pred HHhhhhc---ccCCCcceEEeecc
Confidence 6666554 35789999999974
|
| >d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=99.91 E-value=1.5e-23 Score=203.54 Aligned_cols=209 Identities=18% Similarity=0.188 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCCchhHHHHHHHhhcC-----C----CcEEEccCCchhH------HHhcCC-CHH
Q 017890 139 MVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALS-----A----DDFILPQYREPGV------LLWRGY-TLQ 202 (364)
Q Consensus 139 M~~~R~~D~~~~~~~rqGri~f~~~~~GqEa~~vg~a~aL~-----~----~D~v~~~yR~~g~------ll~rG~-~~~ 202 (364)
.++...+|. ...-..|.++-.+++ -|.+.+.....|+ | .|.++.+ -+|+. +...|+ ...
T Consensus 10 ~iR~~~~~~--v~~a~sGH~G~~ls~--a~i~~~Ly~~~l~~~~~~p~~~~rDrfvlS-kGH~~~~lYa~l~~~G~~~~~ 84 (336)
T d1r9ja2 10 CIRCLAADI--VQGGKSGHPGTPMGM--APMSAVLWTEVMKYNSQDPDWVDRDRFVMS-NGHGCALQYALLHMAGYNLTM 84 (336)
T ss_dssp HHHHHHHHH--HHHHTCSCCHHHHHT--HHHHHHHHHTTCCCCTTCTTCTTCCEEEES-SGGGHHHHHHHHHHHTCSCCH
T ss_pred HHHHHHHHH--HHHcCCCChhHHHHH--HHHHHHHHHHHhccCCCCCCCCCCCeEEEe-CCccchHHHHHHHHcCCCCcH
Confidence 344444554 333456777655444 3455444444554 2 2655554 24443 333674 344
Q ss_pred HHHHHHhcCCCCCCCCCCCccccCCCc-ccccccCCCcccchhHHHHHHHHhhhc----------cCCCeEEEEeCCCcc
Q 017890 203 QFANQVFANKADDGKGRQMPIHYGSKK-LNYITISSPIATQLPQAVGVAYSLKME----------KKDACAVAYTGDGGT 271 (364)
Q Consensus 203 ~~l~~~~g~~~~~~~Gr~mp~H~~~~~-~~~~~~sg~LG~~lp~AvG~A~A~k~~----------~~~~~vv~~~GDGa~ 271 (364)
+.+..++. .|+.++.|+.... +++...+|+||++++.|+|+|+|.|+. .-+..|+|++|||++
T Consensus 85 ~~l~~~~~------~~s~~~ghp~~~~~pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~vy~~~GDGel 158 (336)
T d1r9ja2 85 DDLKGFRQ------DGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCL 158 (336)
T ss_dssp HHHHTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHH
T ss_pred HHHhhhcc------CCCcCcccccccCCCcccccccccccCcchhhHHHHHHHHHhccccccccccccceeEEeccchhh
Confidence 44545542 5888999987644 678888999999999999999998752 235789999999999
Q ss_pred ccccHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeC--CCHHHHHHHHHHHHHHhh
Q 017890 272 SEGDFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDG--NDALAVYTAVQAAREMAI 348 (364)
Q Consensus 272 ~eG~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDG--nD~~av~~a~~~A~~~ar 348 (364)
+||..|||+++|+.++| ++|+|++||+.+++.++.. ...+++.+|+++|||+++.||| +|...+..++.++.+
T Consensus 159 ~EG~~~EA~~~A~~~~L~nLi~i~D~N~~~idg~~~~-~~~~d~~~rf~afGW~vi~Vdgg~~d~~~~~~~~~~a~~--- 234 (336)
T d1r9ja2 159 MEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSL-SFTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA--- 234 (336)
T ss_dssp HSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGG-TCCCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---
T ss_pred chHHHHHHHHHHHHhhcCCEEEEEecccccccccccc-cchhHHHHHHHHhccceEEEecCchHHHHHHHHhhhhhh---
Confidence 99999999999999999 8999999999999877654 4468899999999999999987 455666666665554
Q ss_pred cCCCcEEEEEEeec
Q 017890 349 SEKRPVLVEVRLNF 362 (364)
Q Consensus 349 ~~~~P~LIea~T~R 362 (364)
..++|++|+|+|++
T Consensus 235 ~~~kP~~Ii~kTii 248 (336)
T d1r9ja2 235 TKGKPKMIVQTTTI 248 (336)
T ss_dssp CCSSCEEEEEECCT
T ss_pred ccCCCccceEEEEE
Confidence 35689999999986
|
| >d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Maize (Zea mays) [TaxId: 4577]
Probab=99.90 E-value=2.4e-23 Score=202.27 Aligned_cols=141 Identities=20% Similarity=0.241 Sum_probs=122.8
Q ss_pred CCCCCccccCCC-cccccccCCCcccchhHHHHHHHHhhhc----------cCCCeEEEEeCCCccccccHHHHHHHHHH
Q 017890 217 KGRQMPIHYGSK-KLNYITISSPIATQLPQAVGVAYSLKME----------KKDACAVAYTGDGGTSEGDFHAALNFAAV 285 (364)
Q Consensus 217 ~Gr~mp~H~~~~-~~~~~~~sg~LG~~lp~AvG~A~A~k~~----------~~~~~vv~~~GDGa~~eG~~~EALn~Aa~ 285 (364)
.|+.+++|+... .+++...+||||++++.|+|+|+|.|+. ..++.|+|++|||+++||..|||+++|+.
T Consensus 97 ~~s~~~Ghp~~~~~pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~vl~GDGel~EG~~wEA~~~A~~ 176 (338)
T d1itza1 97 WGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGH 176 (338)
T ss_dssp TTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH
T ss_pred cCCcCCccccCCCCCCccccCCcHHhhHHHHHHHHHHHHHHhccccccccccccceEEEEeCccccchHHHHHHHhHhhh
Confidence 578899998864 4688889999999999999999998853 23678999999999999999999999999
Q ss_pred cCC-CEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCC--CHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 286 MEA-PVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGN--DALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 286 ~~L-PvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGn--D~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
++| ++|+|+++|+.+++.++. .....++.+++++|||.++.|+|+ |.+++..+++.|.. ..++|++|.|.|.
T Consensus 177 ~~L~NLi~i~D~N~~~~dg~~~-~~~~~~~~~k~~a~Gw~vi~v~~g~~~~~~i~~a~~~a~~---~~~kPt~Iia~Ti 251 (338)
T d1itza1 177 WGLGKLIAFYDDNHISIDGDTE-IAFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIKVTTT 251 (338)
T ss_dssp TTCTTEEEEEEECSEETTEEGG-GTCCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECC
T ss_pred hhccceeeeehhhccccccccc-cccCCCHHHHHHhcCCeEEEeeCCchhHHHHHHHHHHHHH---ccCCCceeEeecC
Confidence 999 899999999999988765 445678999999999999998653 68889988888765 3678999999996
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=3.2e-18 Score=169.88 Aligned_cols=220 Identities=15% Similarity=0.149 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CcccccccCCchhHHHHHHHhhcC------CCcEEEccCCch----hHHHhcCCCH
Q 017890 136 YSHMVTLQVMDSVLYEAQRQ----GRFSFYLTTIGEEAINIGSAAALS------ADDFILPQYREP----GVLLWRGYTL 201 (364)
Q Consensus 136 y~~M~~~R~~D~~~~~~~rq----Gri~f~~~~~GqEa~~vg~a~aL~------~~D~v~~~yR~~----g~ll~rG~~~ 201 (364)
....++...++.....-..- |.++-++++ -|...|+....|+ .+|+|+...... +++...|+..
T Consensus 26 ~~~~iR~~~~~~v~~a~~~~~~~GGH~g~~ls~--~~l~~vl~~~~~~~p~~~~~d~~ilskGHas~~lYa~l~~~g~~~ 103 (415)
T d2ieaa2 26 IRSAIRWNAIMTVLRASKKDLELGGHMASFQSS--ATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLT 103 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCCCCCHHHHHH--HHHHHHHHHHTCCCCCSSSCCCEEECCGGGHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHH--HHHHHHHHHhhcCCCCcCCCCCEEEecCcchHHHHHHHHHcCCCc
Confidence 44445555555543332222 344333333 2333455555665 346777653221 2345578766
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccCCCcccccccCCCcccchhHHHHHHHHhhh-------ccCCCeEEEEeCCCccccc
Q 017890 202 QQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKM-------EKKDACAVAYTGDGGTSEG 274 (364)
Q Consensus 202 ~~~l~~~~g~~~~~~~Gr~mp~H~~~~~~~~~~~sg~LG~~lp~AvG~A~A~k~-------~~~~~~vv~~~GDGa~~eG 274 (364)
.+.+..++... ...|.....|+..........++++|.+...++|.+.+.+. ++.+..|+|++|||+++||
T Consensus 104 ~~~l~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~gDg~~~eg 181 (415)
T d2ieaa2 104 QEQLDNFRQEV--HGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEP 181 (415)
T ss_dssp HHHHTTBTCCT--TSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSH
T ss_pred hhhHHHHhhhc--cCCCCCCCCCCCCCCCCCcCCCchhhhHHHHHHHHHHHHHHHhhhccccCCCceEEEEecccccchH
Confidence 66665554211 11122222222222233444567778777777776665442 3567899999999999999
Q ss_pred cHHHHHHHHHHcCC-CEEEEEEcCCccccccccccc-CCccHHHHHhhcCeEEEEE------------------------
Q 017890 275 DFHAALNFAAVMEA-PVVFICRNNGWAISTNISEQF-RSDGIVVKGRAYGIRSIRV------------------------ 328 (364)
Q Consensus 275 ~~~EALn~Aa~~~L-PvIfVV~NNg~ais~~~~~~~-~~~~ia~~a~a~G~~~~~V------------------------ 328 (364)
..|||+++|+.++| ++|+|+++|+++++.++.... ..+++.+++++|||+++.|
T Consensus 182 ~~~ea~~~a~~~~l~nl~~i~d~N~~~~~~~~~~~~~~~~~~~~~~~~~gw~v~~~~~~~~~~~~~~~d~~~al~~~~~~ 261 (415)
T d2ieaa2 182 ESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNE 261 (415)
T ss_dssp HHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCGGGHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEEeCCceeeccChhccccchHHHHHHHHhcCceeEEeecchhhhhhhccchhhhhhhhhhc
Confidence 99999999999999 999999999999999876543 3478899999999999887
Q ss_pred ---------------------------------------------eCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 329 ---------------------------------------------DGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 329 ---------------------------------------------DGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
||||+.+++++++++.+. .++|++|.++|.+
T Consensus 262 ~v~g~~~~~~~~~ga~~~~~~~~~~~~~~~l~~~l~~~~~~~l~~dGHd~~~l~~a~~~ak~~---~d~P~vI~a~TiK 337 (415)
T d2ieaa2 262 TVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQET---KGKATVILAHTIK 337 (415)
T ss_dssp CCHHHHHHHTTSCHHHHHHHTGGGSHHHHTTSTTSCHHHHTTCCBGGGCHHHHHHHHHHHHHC---CSSCEEEEEECCT
T ss_pred cccccceeccccchhhhhhhhccccchhhHHHhhhhhhhhhhhhhccCchhhhHHHHHHHHhc---CCCceEEEEeccc
Confidence 889999999999999873 5789999999864
|
| >d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=99.73 E-value=2.9e-18 Score=157.53 Aligned_cols=119 Identities=15% Similarity=0.216 Sum_probs=95.6
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc--------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI-------- 305 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~-------- 305 (364)
..++||+++|.|+|+++|. +++.|||++|||+++++ .. +|.+|+++++|+++||.|| +|++....
T Consensus 50 ~~g~mG~~lp~aiGa~~a~----p~~~vv~i~GDGsf~m~-~~-eL~ta~~~~lpi~iiV~nN~~~~~i~~~~~~~~~~~ 123 (229)
T d2djia3 50 LFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMT-YP-DVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNL 123 (229)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH-GG-GHHHHHHTTCCCEEEEEECSBCTHHHHHHHHHCSCC
T ss_pred Ccccccccchhhhhhhhhc----ccccccccccccccccc-cc-hhhhhhcccCCceEEEeCCchhhhhhHHHHhhcCCC
Confidence 3589999999999998884 68899999999999874 34 4999999999986666666 47643211
Q ss_pred -ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 -SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 -~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
...+...|+++.|++||+++++|+ +++++.+++++|++. ++.++|+|||+++.+
T Consensus 124 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~A~~~-~~~~~p~lIev~v~~ 178 (229)
T d2djia3 124 FGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAA-NKAGHTVVIDCKITQ 178 (229)
T ss_dssp CSCBCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHH-HHTTCCEEEEEECCS
T ss_pred CcCcCCCCChhhhhhccCccEEEEe--cHHHhHHHHHHHHHh-cCCCCeEEEEEEeCC
Confidence 112345789999999999999998 688999999999874 445699999999875
|
| >d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=99.71 E-value=1.4e-17 Score=147.59 Aligned_cols=116 Identities=23% Similarity=0.356 Sum_probs=92.3
Q ss_pred ccCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEE-EcCCccccccc-------
Q 017890 234 TISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNI------- 305 (364)
Q Consensus 234 ~~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV-~NNg~ais~~~------- 305 (364)
...|+||+++|.|+|+++|. ++++|||++|||++.+. ..| |.+|.++++|+++|| +||+|++....
T Consensus 57 ~~~g~mG~~~p~AiGa~la~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpv~~iV~nN~~~g~~~~~~~~~~~~ 130 (183)
T d1q6za3 57 CAAGGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS-ISA-LWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAE 130 (183)
T ss_dssp CTTCCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT-GGG-HHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCC
T ss_pred ccCCCcccchhHHHhhhhhc----cccceEEeccccccccc-cHH-HHHHHHhCCCEEEEEEeccccchhhhhhhccccc
Confidence 34578999999999998884 68899999999999874 445 999999999986555 55557653211
Q ss_pred ---ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEee
Q 017890 306 ---SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLN 361 (364)
Q Consensus 306 ---~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~ 361 (364)
.......++.+.+++||+++++|+ +++++.+++++|++ .++|+|||++|.
T Consensus 131 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lieV~T~ 183 (183)
T d1q6za3 131 NVPGLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEALS----AKGPVLIEVSTV 183 (183)
T ss_dssp SCCSCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHHHT----CSSCEEEEEEBC
T ss_pred CcccccCCCccHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHh----CCCcEEEEEEeC
Confidence 112345689999999999999997 79999999988875 689999999984
|
| >d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.71 E-value=1.1e-17 Score=151.34 Aligned_cols=115 Identities=23% Similarity=0.286 Sum_probs=93.6
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNI--------- 305 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~--------- 305 (364)
.++||.++|.|+|+++| .+++.|||++|||++++. ..| |.+|.++++|+++||.|| +|++....
T Consensus 51 ~g~mG~glpaaiGa~~A----~p~~~Vi~i~GDGsf~m~-~~E-l~Ta~r~~lpi~iiV~NN~~~g~i~~~q~~~~~~~~ 124 (208)
T d1ybha3 51 LGAMGFGLPAAIGASVA----NPDAIVVDIDGDGSFIMN-VQE-LATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKANR 124 (208)
T ss_dssp SCCTTCHHHHHHHHHHH----CTTSCEEEEEEHHHHHHT-TTH-HHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTCC
T ss_pred cccchhhhhhHHHHHhc----CCCCcEEEEccCCchhhh-hhh-HHHHHHhCCCEEEEEEeccccccceehhhhcccccc
Confidence 47999999999999887 478899999999999874 556 999999999997776666 56542211
Q ss_pred ---------ccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 306 ---------SEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 306 ---------~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.......|+++.|++||+++++|+ +++++.+++++|++ .++|+|||+++.+
T Consensus 125 ~~~~~~~~~~~~~~~pd~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~id~ 184 (208)
T d1ybha3 125 AHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTMLD----TPGPYLLDVICPH 184 (208)
T ss_dssp CSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHHH----SSSCEEEEEECCT
T ss_pred cccccccccccCCCCCCHHHhhccCCceEEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 111234589999999999999998 79999999999886 5899999999865
|
| >d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.69 E-value=2e-17 Score=148.57 Aligned_cols=115 Identities=24% Similarity=0.364 Sum_probs=92.0
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccc----------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTN---------- 304 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~---------- 304 (364)
.++||+++|.|+|+++|. +++.|||++|||++.+. ..| |.+|+++++|+++||.||+ |++...
T Consensus 61 ~g~mG~~lp~aiGa~~a~----p~~~Vv~i~GDGsf~~~-~~e-l~t~~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~~ 134 (198)
T d2ihta3 61 CSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN-SSD-LETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSH 134 (198)
T ss_dssp SCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT-GGG-HHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSCC
T ss_pred cccchhHHHHHHHHhhhh----cccceEeeccccccccc-chh-hhhhhhhhhhhhHHHhhccccceEeeeecccccccc
Confidence 478999999999998874 78899999999999764 444 9999999999876666664 653211
Q ss_pred -cccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 305 -ISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 305 -~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
........|+++.|++||+++++|+ +.+++.+++++|++ .++|+|||++|.+
T Consensus 135 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~vd~ 187 (198)
T d2ihta3 135 DPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGAE----LGRPFLIEVPVNY 187 (198)
T ss_dssp GGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHHT----SSSCEEEEEEBCC
T ss_pred ccccccCCcchhhhccccCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEcCC
Confidence 1112345689999999999999997 78999998888875 6899999999864
|
| >d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=99.68 E-value=2.6e-17 Score=151.16 Aligned_cols=118 Identities=17% Similarity=0.304 Sum_probs=93.6
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccc---------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTN--------- 304 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~--------- 304 (364)
..|+||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|.++++|+++||.||+ |++...
T Consensus 53 ~~g~mG~glpaAiGa~la~----p~~~Vv~i~GDG~f~m~-~~E-L~Ta~~~~lpi~~vV~NN~~yg~i~~~q~~~~~~~ 126 (228)
T d2ez9a3 53 LFATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMT-MQD-LATQVQYHLPVINVVFTNCQYGWIKDEQEDTNQND 126 (228)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH-GGG-HHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSC
T ss_pred ccccccccchhhhhhhhhh----ccceeEeecCCcccccc-chh-hhhhccccCceEEEEeccccchhhhhhhhhcccCC
Confidence 3588999999999998884 78899999999999874 445 9999999999977776664 654321
Q ss_pred -cccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 305 -ISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 305 -~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
....+...|+++.|++||+++++|+ ++.++..++++|+. .+.++|+|||+++.+
T Consensus 127 ~~~~~l~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~a--l~~~~p~lIev~vd~ 181 (228)
T d2ez9a3 127 FIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKA--IAQHEPVLIDAVITG 181 (228)
T ss_dssp CCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHH--HTTTSCEEEEEECCC
T ss_pred cccccccCccHHhhccccccceEEeC--CHHHHHHHHHHHHH--HcCCCeEEEEEEECC
Confidence 1112345789999999999999997 67789899988653 356899999999865
|
| >d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=1.3e-16 Score=146.40 Aligned_cols=116 Identities=20% Similarity=0.274 Sum_probs=94.6
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccc---------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTN--------- 304 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~--------- 304 (364)
..++||+++|.|+|+++|. +++.|||++|||++++. ..| |.+|.++++|+++||.|| +|+....
T Consensus 61 ~~g~mG~~~~aaiGa~lA~----p~r~Vv~i~GDGsf~m~-~~E-L~Ta~r~~l~i~iiV~nN~~~g~~~~~~~~~~~~~ 134 (227)
T d1t9ba3 61 GLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT-LTE-LSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHR 134 (227)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH-GGG-HHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTC
T ss_pred ccccchhhHHHHHHHHhcC----CCCeEEEeCCCcccccc-hHH-HHHHhhcCCceEEEEEecccccchhHHHhhhhccc
Confidence 3589999999999999884 78899999999999874 455 999999999987666666 4653221
Q ss_pred -cccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 305 -ISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 305 -~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
........|+++.|++||+++++|. +.+++.+++++|++ .++|+|||+++.+
T Consensus 135 ~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~vd~ 187 (227)
T d1t9ba3 135 YSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVS----TKGPVLLEVEVDK 187 (227)
T ss_dssp CCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----CSSCEEEEEEBCS
T ss_pred cccccCCCCCHHHHHhhcccceEeeC--CHHHHHHHHHHHHH----CCCCEEEEEEECC
Confidence 1122345789999999999999997 78999999999886 6899999999875
|
| >d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.65 E-value=1.1e-16 Score=142.81 Aligned_cols=116 Identities=21% Similarity=0.340 Sum_probs=92.5
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEE-EcCCcccccccc-------
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFIC-RNNGWAISTNIS------- 306 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV-~NNg~ais~~~~------- 306 (364)
..|+||+++|.|+|+++|. +++.||+++|||++.+. ..| |.++.++++|+++|| +||+|++....+
T Consensus 52 ~~g~mG~~l~~aiGa~la~----p~~~vi~i~GDG~f~~~-~~e-l~t~~~~~l~~~iiv~nN~~~~~~~~~~~~~~~~~ 125 (192)
T d1ozha3 52 GQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQS-SME-LETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRL 125 (192)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH-TTH-HHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred ccccccccccchhHHHhhc----ccccceeecccccccch-hhh-HHHHhhhcCceeEEEEcCCCccccccccccccCcc
Confidence 3589999999999998884 67899999999999874 344 889999999886555 555676543211
Q ss_pred --cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 --EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 --~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++.+.|++||+++++|+ +++++.+++++|++ .++|+|||++|.|
T Consensus 126 ~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~vd~ 177 (192)
T d1ozha3 126 SGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAMD----VDGPAVVAIPVDY 177 (192)
T ss_dssp CSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHHH----SSSCEEEEEEBCC
T ss_pred ccCcCCCCCHHHHHHHhccccEEeC--CHHHHHHHHHHHHH----cCCcEEEEEEeCC
Confidence 12234689999999999999997 67889999988876 6899999999875
|
| >d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=1.4e-16 Score=142.46 Aligned_cols=122 Identities=13% Similarity=0.166 Sum_probs=95.0
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEE-EEEcCCcccccccc------c
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVF-ICRNNGWAISTNIS------E 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIf-VV~NNg~ais~~~~------~ 307 (364)
..++||+++|.|+|+|+|.|..++++.|||++|||++.+. .. +|.+|.++++|+++ |++||+|++..... .
T Consensus 51 ~~g~mG~~l~~aiG~alaa~~~~p~~~Vv~i~GDGsf~m~-~~-eL~ta~~~~l~i~~iV~nN~~y~~~~~~~~~~~~~~ 128 (196)
T d1pvda3 51 LWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT-VQ-EISTMIRWGLKPYLFVLNNDGYTIEKLIHGPKAQYN 128 (196)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH-GG-GHHHHHHTTCCCEEEEEESSSCHHHHTTSCTTCGGG
T ss_pred CcCcccccccchhHHHHHHHhcCCCCceeeccCccccccc-cc-cccccccccccceEEEEeCCccceeEeeccCccccc
Confidence 4589999999999999999999999999999999999864 33 49999999998755 55555686532211 1
Q ss_pred ccCCccHHHHHhhcC---eEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 QFRSDGIVVKGRAYG---IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ~~~~~~ia~~a~a~G---~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++.+.|++|| +++.+|+ +.+++.++++++. ..+.++|+|||+++-|
T Consensus 129 ~~~~~d~~~la~a~G~~~~~~~~v~--~~~el~~al~~~~--~~~~~~~~lIeV~i~~ 182 (196)
T d1pvda3 129 EIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKS--FNDNSKIRMIEIMLPV 182 (196)
T ss_dssp CCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTT--TTSCSSEEEEEEECCT
T ss_pred cCCCCCHHHHHHHhCCCCceEEEec--CHHHHHHHHHHHH--HhCCCCcEEEEEECCC
Confidence 123468999999998 5567776 7889988887653 2356789999999865
|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=99.62 E-value=7e-16 Score=136.47 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=90.2
Q ss_pred CCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccc---------
Q 017890 236 SSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNIS--------- 306 (364)
Q Consensus 236 sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~--------- 306 (364)
.|+||+++|.|+|++ |. +++.||+++|||++.+. ..| |.+|+++++|+++||.||+--+.....
T Consensus 56 ~g~mG~~l~~aig~~-a~----~~~~vv~i~GDGsf~~~-~~e-l~ta~~~~l~i~iiV~NN~g~~~~~q~~~~~~~~~~ 128 (183)
T d2ji7a3 56 WGVMGIGMGYCVAAA-AV----TGKPVIAVEGDSAFGFS-GME-LETICRYNLPVTVIIMNNGGIYKGNEADPQPGVISC 128 (183)
T ss_dssp TTCTTCHHHHHHHHH-HH----HCSCEEEEEEHHHHHTT-GGG-HHHHHHTTCCEEEEEEECSBSSCSCCCCSBTTBCCT
T ss_pred ccccccccchhhhhh-cC----CcceEEEEEcCcchhhc-hhh-hhhhhhccccchhhhhhhhhhhhhhhcccccccccc
Confidence 478999999998765 32 56789999999999875 445 999999999999888888521111110
Q ss_pred cccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 307 EQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 307 ~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
......++++.|++||+++++|+ +++++.+++++|++ .++|+|||+++.+
T Consensus 129 ~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~idp 178 (183)
T d2ji7a3 129 TRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVA----SGKPCLINAMIDP 178 (183)
T ss_dssp TBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----HTSCEEEEEEBCT
T ss_pred ccccccchhhhhhhcCCcEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEECC
Confidence 11234689999999999999997 78999999999886 4889999999864
|
| >d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=99.61 E-value=2.8e-16 Score=140.57 Aligned_cols=116 Identities=19% Similarity=0.231 Sum_probs=88.8
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc------c
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNIS------E 307 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~------~ 307 (364)
..|+||+++|.|+|+++|. ++++|||++|||++.++ . .+|.+|.++++|+++||.|| +|++....+ .
T Consensus 51 ~~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~~~-~-~eL~ta~~~~l~i~iiV~nN~~~~~~~~~~~~~~~~~ 124 (196)
T d1ovma3 51 LWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLT-I-QELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYN 124 (196)
T ss_dssp TTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH-T-THHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred CCccccccchhhHHHHHhh----hccceecccccccceee-c-ccccccccccccceEEEEecCccccchhhhccccccc
Confidence 3579999999999999885 67899999999999874 3 45999999999986665555 687642211 1
Q ss_pred ccCCccHHHHHhhcCe----EEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 308 QFRSDGIVVKGRAYGI----RSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 308 ~~~~~~ia~~a~a~G~----~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
.....++.+.+++||+ ++++|+ +.+++.++++++++ .++|+|||+++-|
T Consensus 125 ~~~~~~~~~~a~~~g~~~~~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 177 (196)
T d1ovma3 125 DIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVAH----HERLSLIEVMLPK 177 (196)
T ss_dssp CCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHTT----CSSEEEEEEECCT
T ss_pred cccccccchhHHhcCccccceeEEEe--cHHHHHHHHHHHHH----CCCcEEEEEEeCh
Confidence 1233567788888875 788887 78888888877664 6899999999864
|
| >d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=99.60 E-value=1e-15 Score=137.72 Aligned_cols=117 Identities=17% Similarity=0.221 Sum_probs=89.2
Q ss_pred cCCCcccchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcC-Cccccccccc----cc
Q 017890 235 ISSPIATQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNN-GWAISTNISE----QF 309 (364)
Q Consensus 235 ~sg~LG~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NN-g~ais~~~~~----~~ 309 (364)
..++||+++|.|+|+++|. +++.|||++|||++.+. . .+|.+|.++++|+++||.|| +|++.....+ ..
T Consensus 49 ~~g~mG~~l~aAiGa~la~----p~~~vv~i~GDGsf~m~-~-~eL~Ta~~~~lpi~iiV~NN~~~g~~~~~~~~~~~~~ 122 (204)
T d1zpda3 49 QWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQLT-A-QEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNI 122 (204)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH-G-GGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCC
T ss_pred CCcccchhhHHHHHHHHhC----CCCceeccccccceeee-e-cccchhhhcccccceEEEecccccccceecccccccc
Confidence 4588999999999998884 78999999999999874 3 45999999999986666555 6776433222 12
Q ss_pred CCccHHHHH---------hhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeec
Q 017890 310 RSDGIVVKG---------RAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNF 362 (364)
Q Consensus 310 ~~~~ia~~a---------~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R 362 (364)
...++.+.+ +++|+++++|+ +++++.+++++|+. +.++|+|||+++.|
T Consensus 123 ~~~d~~~~~~~~~~~~~a~~~g~~~~~v~--~~~el~~al~~al~---~~~gp~lieV~vd~ 179 (204)
T d1zpda3 123 KNWDYAGLMEVFNGNGGYDSGAAKGLKAK--TGGELAEAIKVALA---NTDGPTLIECFIGR 179 (204)
T ss_dssp CCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHH---CCSSCEEEEEECCT
T ss_pred chhhhhhhhhhcCcchhhhccCccEEEec--CHHHHHHHHHHHHH---cCCCcEEEEEEECc
Confidence 234555544 35689999997 78999999998864 35789999998765
|
| >d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR PP module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI species: Desulfovibrio africanus [TaxId: 873]
Probab=97.62 E-value=0.00017 Score=70.54 Aligned_cols=106 Identities=13% Similarity=0.156 Sum_probs=78.3
Q ss_pred HHHHhhhccCCCeEEEEeCCCcc-ccccHHHHHHHHHHcCCCEEEEEEcCC-ccccc-------ccc---------cccC
Q 017890 249 VAYSLKMEKKDACAVAYTGDGGT-SEGDFHAALNFAAVMEAPVVFICRNNG-WAIST-------NIS---------EQFR 310 (364)
Q Consensus 249 ~A~A~k~~~~~~~vv~~~GDGa~-~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~-------~~~---------~~~~ 310 (364)
.-+..+....+..||++.|||.+ ..| + .+|.-|...+.+|++||.||. |+... |.. ....
T Consensus 159 ~i~~~~d~~~k~~V~~~gGDG~~~dIG-~-~~L~~A~~rg~nit~ivlDNe~Y~nTGgQ~S~~TP~Ga~t~ttp~Gk~~~ 236 (447)
T d2c42a2 159 QIAAMSDLYTKKSVWIFGGDGWAYDIG-Y-GGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTG 236 (447)
T ss_dssp HHHTTGGGTSCCEEEEEEEHHHHHTTT-H-HHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSC
T ss_pred HhhhhhhcccCCcEEEEecCccHhhcC-h-HHHHHHHHcCCCceEEEEcCccccCCCCcCCCCCcCCeecccccCCCcCC
Confidence 33444445677899999999986 677 2 458888899999988887775 65432 211 1122
Q ss_pred CccHHHHHhhcCeEEE-EEe-CCCHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Q 017890 311 SDGIVVKGRAYGIRSI-RVD-GNDALAVYTAVQAAREMAISEKRPVLVEVRL 360 (364)
Q Consensus 311 ~~~ia~~a~a~G~~~~-~VD-GnD~~av~~a~~~A~~~ar~~~~P~LIea~T 360 (364)
..++...+.++|...+ ++. +.|..++.+++++|.+ .+||.+|++.+
T Consensus 237 kkdi~~ia~a~g~~YVA~~s~~~~~~~l~kaikeA~~----~~GpS~I~~~s 284 (447)
T d2c42a2 237 KKDLARMVMTYGYVYVATVSMGYSKQQFLKVLKEAES----FPGPSLVIAYA 284 (447)
T ss_dssp CCCHHHHHHTTSSSEEEEECTTTCHHHHHHHHHHHHH----SSSCEEEEEEC
T ss_pred CCCHHHHHHHCCCceEEEEeCCCCHHHHHHHHHHHHh----CCCCeEEEeec
Confidence 3578899999998765 664 7899999999999988 48999999864
|
| >d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=95.93 E-value=0.02 Score=48.77 Aligned_cols=106 Identities=17% Similarity=0.143 Sum_probs=65.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccc---ccccc---CCccHHHHH
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTN---ISEQF---RSDGIVVKG 318 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~---~~~~~---~~~~ia~~a 318 (364)
+|-|.+.. .++. .+++..|=|.++ ...++.-|...++|+|+|+-+.....-.+ ...+. ...+..+.+
T Consensus 55 mA~gyar~---tg~~-~v~~t~GpG~~N---~~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (186)
T d1zpda2 55 SAEGYARA---KGAA-AAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMA 127 (186)
T ss_dssp HHHHHHHH---HSCE-EEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHH
T ss_pred hhhhhhhc---cccc-eeEeeccccchh---hhhhhhhhhhcccceEEEecccCcccccCCCcceeecCCcchhhhhhcc
Confidence 45555543 3332 233345655553 45678889999999999997544322111 11111 122345667
Q ss_pred hhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 319 RAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 319 ~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
+.+--...+|+ +++++.+.+++|++.|..+.+|+.|++-
T Consensus 128 ~~vtk~~~~v~--~~~~~~~~i~~A~~~A~~~~~PV~l~iP 166 (186)
T d1zpda2 128 KNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIA 166 (186)
T ss_dssp GGGCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCceeeeeEcC--CHHHHHHHHHHHHHHHhhCCCCEEEECC
Confidence 77777777776 6667777777777777777789999874
|
| >d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=95.67 E-value=0.016 Score=49.37 Aligned_cols=97 Identities=22% Similarity=0.125 Sum_probs=64.0
Q ss_pred ccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeEEEEEeCCCHHH
Q 017890 256 EKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALA 335 (364)
Q Consensus 256 ~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~a 335 (364)
.++-.++++..|=|.++ ...++.-|..-+.|+|+|+-+......... .+..-|....++.+.-...+|. ++++
T Consensus 66 tg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~--~~Q~~d~~~~~~~itk~~~~v~--~~~~ 138 (184)
T d2djia2 66 GGNLGVTVGSGGPGASH---LINGLYDAAMDNIPVVAILGSRPQRELNMD--AFQELNQNPMYDHIAVYNRRVA--YAEQ 138 (184)
T ss_dssp TCCCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEESCGGGTTTT--CTTCCCCHHHHHTTCSEEEECC--SGGG
T ss_pred ccCcceeeccccccccc---hhHhHHHHHHhCccceeecccchhhHhhcC--cccccccccchhhhcceeeccc--cchh
Confidence 34444455555666765 356788888999999999976532211111 1112244566666766667776 6778
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 336 VYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 336 v~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
+.+.+++|++.+..+.+|+.|++-
T Consensus 139 ~~~~~~~A~~~a~~~rGPv~i~iP 162 (184)
T d2djia2 139 LPKLVDEAARMAIAKRGVAVLEVP 162 (184)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred hHHHHHHHHHHHhCCCCCEEEEeC
Confidence 888888888888878899999874
|
| >d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=95.52 E-value=0.016 Score=49.31 Aligned_cols=108 Identities=16% Similarity=0.141 Sum_probs=67.6
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
-+|.|.+.+ .++-.++++..|=|.++ ...++.-|...+.|+|+|.-+-.-.............|..+.++.+--
T Consensus 55 ~~A~gyar~---tg~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~q~~d~~~~~~~~tk 128 (188)
T d2ji7a2 55 YAASIAGYI---EGKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCK 128 (188)
T ss_dssp HHHHHHHHH---HSSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHTGGGSS
T ss_pred hHHHHHHhh---hcccceeeccccccccc---cchhHHHHHHhcccceEEeccCchhhhcccccccceeeeecccCCcch
Confidence 345566554 34444555555666554 456788888899999999864321111111111222356666777766
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
...+|. +++++.+.+++|++.+..+. ||+.|++-
T Consensus 129 ~~~~v~--~~~~i~~~~~~A~~~a~~~~~GPV~l~iP 163 (188)
T d2ji7a2 129 ASFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLP 163 (188)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred hhhccc--cccccHHHHHHHHHHHhCCCCceEEEEcC
Confidence 677775 67788888888888877765 69999873
|
| >d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.38 E-value=0.033 Score=47.16 Aligned_cols=106 Identities=19% Similarity=0.092 Sum_probs=69.5
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCe
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
-+|-|.|.. .++-.++++..|=|.++ ...++.-|..-+.|+|+|.-+.......... ....|.....+.+.-
T Consensus 56 ~~A~gyar~---tg~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~isg~~~~~~~~~~~--~q~~d~~~~~~~~tk 127 (181)
T d1ozha2 56 FMAAAVGRI---TGKAGVALVTSGPGCSN---LITGMATANSEGDPVVALGGAVKRADKAKQV--HQSMDTVAMFSPVTK 127 (181)
T ss_dssp HHHHHHHHH---HSSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGCS
T ss_pred HHHHHHHHh---cCCccceeeccchhhhh---hhhhHHHHhhcCCceeeeecccchhhccccc--cccccccccccccch
Confidence 345555544 34444555555666665 3567888999999999999876532221111 122356677778877
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
...+|. +++++.+.+++|++.+..+. ||+.|++-
T Consensus 128 ~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (181)
T d1ozha2 128 YAIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSLP 162 (181)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred heeccC--chhHHHHHHHHHHHHHhhCCCccEEEEcC
Confidence 777885 67788888888888887775 69999974
|
| >d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.32 E-value=0.028 Score=47.31 Aligned_cols=107 Identities=11% Similarity=0.083 Sum_probs=57.7
Q ss_pred hHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccc---cccccC---CccHHHH
Q 017890 244 PQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTN---ISEQFR---SDGIVVK 317 (364)
Q Consensus 244 p~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~---~~~~~~---~~~ia~~ 317 (364)
-+|.|.+.+ .+. ..+++..|=|.++ ...++.-|...++|+|+|+-......... .+.... ...+.+.
T Consensus 55 ~~A~gyar~---t~~-~~v~~t~GpG~~N---~~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (180)
T d1pvda2 55 YAADGYARI---KGM-SCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTVFHRM 127 (180)
T ss_dssp HHHHHHHHH---HSC-EEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCCC--------CCSCSSSCSSHHHHH
T ss_pred HHHHHHhhc---cCC-ceeeeccccccch---hhHHHHHHHhhcccEEEEeccCCcccccccceeeecccccchhHHHHH
Confidence 345565544 222 3455556766554 56678888899999999986544322111 111111 1223445
Q ss_pred HhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 318 GRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 318 a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
.+.+--...++. +++++.+.+++|++.|....+|+.|++-
T Consensus 128 ~~~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~gPv~i~iP 167 (180)
T d1pvda2 128 SANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLP 167 (180)
T ss_dssp HGGGCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred hhhheeEEEEcC--CHHHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 555543445554 3444444555555444445689999974
|
| >d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.91 E-value=0.058 Score=45.16 Aligned_cols=105 Identities=21% Similarity=0.222 Sum_probs=67.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.. .++-.++++..|=|.++ ...++..|...++|+|+|+-+........ ......|....++.+--.
T Consensus 57 ~A~gyar~---tg~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~l~~~~tk~ 128 (175)
T d1t9ba2 57 MAEGYARA---SGKPGVVLVTSGPGATN---VVTPMADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVVGISRSCTKW 128 (175)
T ss_dssp HHHHHHHH---HSSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHHHHTGGGSSE
T ss_pred HHHHHHHH---hCCceEEEEecCcHHHH---HHHHHHHHHHcCCCEEEEecCCChhhcCC--CccccccHhHhcccceee
Confidence 45555443 34444555555666665 45678889999999999997654321111 111223566677777655
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|+ ++..+.+.+++|++.++.. .||+.|++-
T Consensus 129 ~~~v~--~~~~~~~~l~~A~~~a~~~~~GPv~l~iP 162 (175)
T d1t9ba2 129 NVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLP 162 (175)
T ss_dssp EEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eEecC--CHHHHHHHHHHHHHHHhcCCCccEEEEcC
Confidence 66775 6777888888888888776 469999874
|
| >d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=94.86 E-value=0.069 Score=45.20 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=69.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCC-cccccccccccCCccHHHHHhhcCe
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNG-WAISTNISEQFRSDGIVVKGRAYGI 323 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg-~ais~~~~~~~~~~~ia~~a~a~G~ 323 (364)
+|-|.+.. .++-.++++..|=|.++ ...++.-|..-+.|+|+|.-+.. ..... .......|..+.++.+--
T Consensus 52 ~A~gyar~---tg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~~q~~d~~~~~~~~tk 123 (186)
T d2ihta2 52 AADVLARI---TGRPQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIFP--NDTHQCLDSVAIVAPMSK 123 (186)
T ss_dssp HHHHHHHH---HCSCEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCCT--TTSTTCCCHHHHHGGGSS
T ss_pred HHHHHhhc---cCCcceeeccccccccc---hhhhhhHHHHhhccceeeeccCcchhccc--cccccccccccccCCcee
Confidence 44444433 34445555555777665 45667788888999999986543 22111 111223467777888877
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhcCC-CcEEEEEE
Q 017890 324 RSIRVDGNDALAVYTAVQAAREMAISEK-RPVLVEVR 359 (364)
Q Consensus 324 ~~~~VDGnD~~av~~a~~~A~~~ar~~~-~P~LIea~ 359 (364)
...+|. +++++.+.+++|++.+..+. ||+.|++-
T Consensus 124 ~~~~v~--~~~~i~~~l~~A~~~a~s~~~GPv~l~iP 158 (186)
T d2ihta2 124 YAVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISLP 158 (186)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEEE
T ss_pred eccccC--CchhhhhHHHHHHHHHhcCCCeeEEEEeC
Confidence 777885 67788888999988887654 69999973
|
| >d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=94.84 E-value=0.035 Score=46.75 Aligned_cols=105 Identities=16% Similarity=0.083 Sum_probs=61.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.+.. .++-.++++..|=|.++ ...++.-|...+.|+|+|.-+..-..... ..+..-|.....+.+--.
T Consensus 57 ~A~gyar~---tgk~gv~~~t~GpG~~N---~~~gl~~A~~~~~P~l~i~g~~~~~~~~~--~~~Q~~d~~~~~~~itk~ 128 (174)
T d2ez9a2 57 AAAADAKL---TGKIGVCFGSAGPGGTH---LMNGLYDAREDHVPVLALIGQFGTTGMNM--DTFQEMNENPIYADVADY 128 (174)
T ss_dssp HHHHHHHH---HSSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTTTTS--CCTTCCCCHHHHTTTCSE
T ss_pred HHHHHHhh---cCceeEEeecccccccc---hhhhHHHHHhcCccceeeeccccccccCc--cccccchhhhhhcccccc
Confidence 45555443 34445555556777766 34668888889999999997653211110 111112344455555444
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~ 359 (364)
..+|. +++++.+.+++|++.+....||+.|++-
T Consensus 129 ~~~v~--~~~~~~~~i~~A~~~A~~~pGPv~l~iP 161 (174)
T d2ez9a2 129 NVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIP 161 (174)
T ss_dssp EEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred ccccc--cHHHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 55664 4555666666666665555799999974
|
| >d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=93.97 E-value=0.13 Score=43.86 Aligned_cols=105 Identities=27% Similarity=0.264 Sum_probs=68.6
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|-|.|.+ .++-.++++..|=|.++ ...++.-|..-+.|+|+|.-+........ ..+...+.....+.+--.
T Consensus 65 mAdgyar~---tg~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvlvi~g~~~~~~~~~--~~~q~~d~~~~~~~~tk~ 136 (195)
T d1ybha2 65 AAEGYARS---SGKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSITKH 136 (195)
T ss_dssp HHHHHHHH---HSSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCHHHHHGGGSSE
T ss_pred HHHHHHHH---HCCCeEEEEecChHHHH---HHHHHHHHHHcCCCEEEEecCCcHHHhcc--Ccccccchhhhhcccccc
Confidence 45565544 34445566666777776 34578888999999999997654322111 112233455666666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|. +++++.+++++|+..+..+ .||+.|++-
T Consensus 137 ~~~v~--~~~~~~~~~~~A~~~a~~~r~GPV~l~iP 170 (195)
T d1ybha2 137 NYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVP 170 (195)
T ss_dssp EEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred hhhcc--hHhhcchHHHHHHHHHhcCCCCcEEEECC
Confidence 66665 6778888899998888876 479999873
|
| >d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=92.82 E-value=0.081 Score=44.59 Aligned_cols=106 Identities=21% Similarity=0.104 Sum_probs=65.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHHHHHhhcCeE
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIVVKGRAYGIR 324 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia~~a~a~G~~ 324 (364)
+|.|.+.. .++-.++++..|=|.++ ...++.-|...+.|+|+|.-+-........ ......|....++.+--.
T Consensus 52 mA~gyar~---tgk~~v~~~~~GpG~~n---~~~gl~~A~~~~~Pvlvi~g~~~~~~~g~~-~~~q~~D~~~~~~~~tK~ 124 (180)
T d1q6za2 52 IADGYAQA---SRKPAFINLHSAAGTGN---AMGALSNAWNSHSPLIVTAGQQTRAMIGVE-ALLTNVDAANLPRPLVKW 124 (180)
T ss_dssp HHHHHHHH---HTSCEEEEEEHHHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHTTT-CTTCCTTGGGSSTTSCSC
T ss_pred HHHHHhhh---ccCcceEEecccccccc---ccceeHhhhhcccceeeecccccccccccc-ccchhhheeecccccccc
Confidence 45555443 45556666667777775 345688888999999999875432211110 011122334444444333
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcC-CCcEEEEEE
Q 017890 325 SIRVDGNDALAVYTAVQAAREMAISE-KRPVLVEVR 359 (364)
Q Consensus 325 ~~~VDGnD~~av~~a~~~A~~~ar~~-~~P~LIea~ 359 (364)
..+|. +++++.+.+++|++.++.+ .||+.|++-
T Consensus 125 ~~~v~--~~~~i~~~l~~A~~~a~~~~~GPv~l~iP 158 (180)
T d1q6za2 125 SYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVP 158 (180)
T ss_dssp EECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred cccCC--CHHHHHHHHHHHHHHHhcCCCccEEEEcC
Confidence 55664 6778888888888888766 469999974
|
| >d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR Pyr module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain I species: Desulfovibrio africanus [TaxId: 873]
Probab=89.76 E-value=0.58 Score=41.36 Aligned_cols=108 Identities=15% Similarity=0.039 Sum_probs=70.1
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc-ccccccccCCccHHHHHhhc
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI-STNISEQFRSDGIVVKGRAY 321 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai-s~~~~~~~~~~~ia~~a~a~ 321 (364)
+..++|++++ +.++.+...-.++. -..|.|..|...++|++++|-+..... ..++. ....|+. .++..
T Consensus 67 ~~~~~Ga~~a------G~r~~t~ts~~Gl~--~m~e~l~~a~~~~~P~V~~v~~r~~~~~~~~~~--~~q~d~~-~~~~~ 135 (257)
T d2c42a1 67 AGAVHGALAA------GALTTTFTASQGLL--LMIPNMYKISGELLPGVFHVTARAIAAHALSIF--GDHQDIY-AARQT 135 (257)
T ss_dssp HHHHHHHHHT------TCCEEEEECHHHHH--HHHHHHHHHHHTTCCCEEEEEECCCCSSSBCCS--CCSHHHH-TTTTS
T ss_pred HHHHHHHHhc------CCCeEEEecchHHH--HHHHHHHHHHhcCCceEEEEEecCCCCCCCccc--cchHHHH-HHHhc
Confidence 5667777765 23455555433333 367889999999999877776654432 11111 1112222 34567
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEEEeecc
Q 017890 322 GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEVRLNFL 363 (364)
Q Consensus 322 G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea~T~R~ 363 (364)
||..+... ++.+.++-...|.+.+.+.+.|+++-.-.+|+
T Consensus 136 g~~~l~~~--s~QEa~d~~~~A~~lae~~~~Pv~~~~Dg~~~ 175 (257)
T d2c42a1 136 GFAMLASS--SVQEAHDMALVAHLAAIESNVPFMHFFDGFRT 175 (257)
T ss_dssp SCEEEECC--SHHHHHHHHHHHHHHHHHHCCCEEEEEETTTT
T ss_pred ceEEEecC--CHHHHHHHHHHHHHHHHHhCCCEEEEeccchh
Confidence 88877654 89999999999998888888999987666553
|
| >d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=88.31 E-value=2.5 Score=35.62 Aligned_cols=109 Identities=11% Similarity=0.013 Sum_probs=67.2
Q ss_pred CCcccc-hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCccHH
Q 017890 237 SPIATQ-LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSDGIV 315 (364)
Q Consensus 237 g~LG~~-lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~~~~~~~~~ia 315 (364)
|.--+. +.+|.|.|.. +.-.++++.+. .+.. ...+.+..+...++||++|....++............+|++
T Consensus 70 GIaEqnm~~iAaGla~~----~g~~p~~~t~~--~F~~-r~~~~ir~~~~~~~~v~~v~~~~g~~~g~dG~THq~ieDla 142 (190)
T d1r9ja1 70 GVREHAMCAILNGLDAH----DGIIPFGGTFL--NFIG-YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELVA 142 (190)
T ss_dssp CSCHHHHHHHHHHHHHH----SSCEEEEEEEG--GGGG-GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHH
T ss_pred ccchhhHHHHHHHHHHc----CCcceEEecch--hhhc-cchHHHHHhcccCCceEEEEecCccccCCCCcchhHHHHHH
Confidence 433333 5666676643 22234444442 3333 34566888888999999999888865443222233456666
Q ss_pred HHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 316 VKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 316 ~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
-.-.--++.+++- -|..++..+++.|++ +.++|+.|-
T Consensus 143 ~~R~iPn~~V~~P--aD~~E~~~al~~a~~---~~~gP~yiR 179 (190)
T d1r9ja1 143 ALRAMPNLQVIRP--SDQTETSGAWAVALS---SIHTPTVLC 179 (190)
T ss_dssp HHHHSTTCEEECC--SSHHHHHHHHHHHHH---CTTCCEEEE
T ss_pred HHHhcCCEEEEec--CCHHHHHHHHHHHHH---cCCCCEEEE
Confidence 4433347877753 378889999988875 357899864
|
| >d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=88.25 E-value=1 Score=36.98 Aligned_cols=104 Identities=17% Similarity=0.095 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccccccc------ccccCCccHHHHH
Q 017890 245 QAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAISTNI------SEQFRSDGIVVKG 318 (364)
Q Consensus 245 ~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ais~~~------~~~~~~~~ia~~a 318 (364)
+|.|.|.. .+. ..|++..|=|.++ ...++.-|...++|+|+|.-.......... .......++....
T Consensus 56 ~A~gyar~---t~~-~~v~~t~GpG~~n---~~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (178)
T d1ovma2 56 AADGYARC---KGF-AALLTTFGVGELS---AMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMS 128 (178)
T ss_dssp HHHHHHHH---HSC-EEEEEETTHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHT
T ss_pred HHHHHHhc---CCC-ceEEeeccccccc---cchhhhHHHhcCccEEEEecCCCchhhccccccccccccchhhhccccc
Confidence 45555443 233 2345555666554 346788888899999999865332111000 0011123455556
Q ss_pred hhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 017890 319 RAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEV 358 (364)
Q Consensus 319 ~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIea 358 (364)
+.+--...+++ +.+++.+..+.+...+. .++|+.|++
T Consensus 129 ~~~tk~~~~v~--~~~~~~~~~~~~~~a~~-~~~Pv~i~i 165 (178)
T d1ovma2 129 EPITVAQAVLT--EQNACYEIDRVLTTMLR-ERRPGYLML 165 (178)
T ss_dssp GGGCSEEEECC--TTTHHHHHHHHHHHHHH-HTCCEEEEE
T ss_pred cccceeEEEeC--cHHHHHHHHHHHHHHHh-CCCCEEEEE
Confidence 66655556665 34455555554443333 468999886
|
| >d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.56 E-value=1.3 Score=37.65 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcccc--cccccccCCccHHHHHhhcCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCc
Q 017890 276 FHAALNFAAVMEAPVVFICRNNGWAIS--TNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRP 353 (364)
Q Consensus 276 ~~EALn~Aa~~~LPvIfVV~NNg~ais--~~~~~~~~~~~ia~~a~a~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P 353 (364)
....+..++..++||++|....++... ++++ ...+|++-.-.--++.+++= -|..++..+++.|++ ..++|
T Consensus 112 ~~~~~~~~~~~~~~v~~v~t~~g~~~g~dG~TH--q~ieDia~~r~iPn~~v~~P--aD~~e~~~a~~~a~~---~~~gP 184 (197)
T d1gpua2 112 AAGAVRLSALSGHPVIWVATHDSIGVGEDGPTH--QPIETLAHFRSLPNIQVWRP--ADGNEVSAAYKNSLE---SKHTP 184 (197)
T ss_dssp GHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTSSSCEEECC--CSHHHHHHHHHHHHH---CSSCC
T ss_pred hHHHHHHhhhcCCceEEEEecccccccccccch--hhHHHHHHHhcCCCcEEEec--CCHHHHHHHHHHHHH---cCCCC
Confidence 345577788889999999988886544 4443 34456654333347776653 267888888888876 25689
Q ss_pred EEEE
Q 017890 354 VLVE 357 (364)
Q Consensus 354 ~LIe 357 (364)
+.|-
T Consensus 185 ~yiR 188 (197)
T d1gpua2 185 SIIA 188 (197)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9874
|
| >d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Escherichia coli [TaxId: 562]
Probab=83.37 E-value=6.1 Score=33.18 Aligned_cols=101 Identities=12% Similarity=0.031 Sum_probs=61.7
Q ss_pred hhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCccHHHHHhh
Q 017890 243 LPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAVMEAPVVFICRNNGWAI--STNISEQFRSDGIVVKGRA 320 (364)
Q Consensus 243 lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~~~LPvIfVV~NNg~ai--s~~~~~~~~~~~ia~~a~a 320 (364)
+++|.|+|.. +.-.+++..+ .+-.....+.+..+...+.++++|+-..+... .++++ ...+|++-.=.-
T Consensus 83 ~~iAaGlA~~----g~~~p~~stf---~~f~~~~~~~ir~~~~~~~~~v~v~~h~g~~~g~dG~TH--q~iEDia~lR~i 153 (195)
T d2r8oa1 83 TAIANGISLH----GGFLPYTSTF---LMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTH--QPVEQVASLRVT 153 (195)
T ss_dssp HHHHHHHHHH----SSCEEEEEEE---GGGGGTTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHhh----CCceEEeecc---eeeeccccchhhccccccccceeeeccccccccccchhh--HHHHHHHHHHhh
Confidence 4556677553 2222333333 33223467778899999998887877776544 34433 344666543333
Q ss_pred cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 321 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 321 ~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
-++.+++- -|..++..+++.|++ +.++|+.|-
T Consensus 154 Pn~~v~~P--~D~~E~~~a~~~a~~---~~~gP~ylR 185 (195)
T d2r8oa1 154 PNMSTWRP--CDQVESAVAWKYGVE---RQDGPTALI 185 (195)
T ss_dssp TTCEEECC--SSHHHHHHHHHHHHH---CSSSCEEEE
T ss_pred CCcEEEec--CCHHHHHHHHHHHHH---cCCCCEEEE
Confidence 47777753 267888888888876 356898764
|
| >d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.49 E-value=3.9 Score=34.28 Aligned_cols=100 Identities=19% Similarity=0.101 Sum_probs=58.6
Q ss_pred cchhHHHHHHHHhhhccCCCeEEEEeCCCccccccHHHHHHHHHH--------cCCCEEEEEEcCCcccccccccccCCc
Q 017890 241 TQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSEGDFHAALNFAAV--------MEAPVVFICRNNGWAISTNISEQFRSD 312 (364)
Q Consensus 241 ~~lp~AvG~A~A~k~~~~~~~vv~~~GDGa~~eG~~~EALn~Aa~--------~~LPvIfVV~NNg~ais~~~~~~~~~~ 312 (364)
..++.|+|+|++ +.+.|+.+==..+..=.+.+-.|.|+. +++|+|+-+-..+..-..+.+.+ .
T Consensus 62 ~~~G~a~G~A~~------G~rPive~~~~df~~~a~dqi~n~~ak~~~~~~g~~~~pvvir~~~g~~~g~g~~Hs~---~ 132 (192)
T d2ozlb1 62 GFAGIAVGAAMA------GLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQ---C 132 (192)
T ss_dssp HHHHHHHHHHHT------TCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCC---C
T ss_pred HHHHHHHHHHhc------CCceEEEEEeccchhhhHHHHHhhhhhhhhhhCCcccceEEEEeccCCCCCccccccc---c
Confidence 446778888764 233444333333433345555566653 45688888876654433333322 2
Q ss_pred cHHHHHhh-cCeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEE
Q 017890 313 GIVVKGRA-YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLV 356 (364)
Q Consensus 313 ~ia~~a~a-~G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LI 356 (364)
+...... -|++++-- .++.+.+..++.|++ .+.|+++
T Consensus 133 -~~~~~~~~PGl~Vv~P--s~p~da~gll~~Ai~----~~~Pvi~ 170 (192)
T d2ozlb1 133 -FAAWYGHCPGLKVVSP--WNSEDAKGLIKSAIR----DNNPVVV 170 (192)
T ss_dssp -CHHHHHTSTTCEEECC--CSHHHHHHHHHHHHH----SSSCEEE
T ss_pred -hHHhhccCCceEEEec--CCHHHHHHHHHHHHh----CCCCEEE
Confidence 2233333 37777643 379999999999987 5789865
|
| >d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module species: Pseudomonas putida [TaxId: 303]
Probab=80.11 E-value=4.4 Score=34.32 Aligned_cols=99 Identities=15% Similarity=0.038 Sum_probs=56.6
Q ss_pred cchhHHHHHHHHhhhccCCCeEEEE--eCCCccccccHHHHHHHHH--------HcCCCEEEEEEcCCcccccccccccC
Q 017890 241 TQLPQAVGVAYSLKMEKKDACAVAY--TGDGGTSEGDFHAALNFAA--------VMEAPVVFICRNNGWAISTNISEQFR 310 (364)
Q Consensus 241 ~~lp~AvG~A~A~k~~~~~~~vv~~--~GDGa~~eG~~~EALn~Aa--------~~~LPvIfVV~NNg~ais~~~~~~~~ 310 (364)
..++.|+|+|++- .++|+. +.|=.+. .+.+-.|-++ .+++|+++..-...+.-..+.+ +
T Consensus 63 ~~vG~A~GlA~~G------~rPvve~~~~df~~~--a~dqi~n~~ak~~~~~~~~~~~p~vir~~~g~~~~~g~~H---s 131 (204)
T d1qs0b1 63 GIVGTAVGMGAYG------LRPVVEIQFADYFYP--ASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTH---S 131 (204)
T ss_dssp HHHHHHHHHHHHT------CEEEEECSCGGGCGG--GHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCSSSCCSSS---S
T ss_pred eehhHHHHHhcCC------CcEEEEEEecchhhH--HHHHHHHHHHHhhcccccCcccceEEEcCcccccCccccc---c
Confidence 4467888888862 244444 3444443 3444446665 2345777666554333333322 2
Q ss_pred CccHHHHHhhc-CeEEEEEeCCCHHHHHHHHHHHHHHhhcCCCcEEEE
Q 017890 311 SDGIVVKGRAY-GIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVE 357 (364)
Q Consensus 311 ~~~ia~~a~a~-G~~~~~VDGnD~~av~~a~~~A~~~ar~~~~P~LIe 357 (364)
..+. .....+ |+.++.= .|+.+.+..++.|++ .+.|+++-
T Consensus 132 ~~~~-s~~~~iPgl~Vv~P--s~~~da~~ll~~a~~----~~~Pvi~~ 172 (204)
T d1qs0b1 132 QSPE-AMFTQVCGLRTVMP--SNPYDAKGLLIASIE----CDDPVIFL 172 (204)
T ss_dssp CCCH-HHHTTSTTCEEECC--CSHHHHHHHHHHHHH----SSSCEEEE
T ss_pred cCHH-HHHhcCCCcEEEee--CCHHHHHHHHHHHHh----CCCcEEEE
Confidence 2333 344443 7766542 478899999999887 68899763
|