Citrus Sinensis ID: 017894

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
MKEKGAATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLFRGAAGLLGLGRNKISLVYQTASKYKKRFSYCLPSSSSSTGHLTFGPGIKKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS
cccccccccccccccccccEEEEEEEEEcccccEEEEEEEcccccEEEEcccccccccccccccccccccccccEEccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEEccccccccEEEEEEcccccccccccEEEEccccccHHHHHHHccccccEEEEccccccccEEEEEccccccccEEEcccccccccccccEEEEEEEEccEEEcccccccccccEEEEcccccEEccHHHHHHHHHHHHHHHcccccccccccccccEEcccccccccccEEEEEccccEEEEccccEEEEEcccEEEEEEEcccccccEEEEEEEEEEEEEEEEEccccEEEEEccccc
cccccccEEEccccccccccEEEEEEEEccccEEEEEEEEccccccEEEEcccccHHHccccccccccccccccccccccHHHHHccccccccccccccccEEEEEEEcccccccEEEEEEEEEEccccccccEEEEccccccccccccccEEEccccccEEHHHcccccccEEEEEEccccccccEEEEcccccccccEccEEcccccccEEEEEEEEEEEccEEEEccHHHcccccEEEEcccEEEcccHHHHHHHHHHHHHHHccccccccccccccEEEcccccEEEccEEEEEEcccEEEEcccccEEEEEcccEEEEEEEcccccccEEEEEEEEEccEEEEEEccccEEEEcccccc
mkekgaatlpaihgsvvgsgnYIVTVGigtpkrkfslifdtgsdltwtqckpcvgfcyqqkekifdpkrsksyrnvscssTVCSSlesatgnipgcasnktcvygiqygdssfsvgFFAKetltltskdvfpkfllgcgqnnrglfrgAAGLLGLGRNKISLVYQTASKYKkrfsyclpssssstghltfgpgikksvkftplssafqgssfygldmtgisvggeklpiattvfstpgtiidsgtvitrlpphayTVLKTAFRQLMskyptapavsildtcydfsehetitipkisfffnggvevdvdvtgimfPIRASQVCLafagnsdpsdvgifgnvqQHTLEVVYDVAHGQVGFAAGGCS
mkekgaatlpaihgsvvgsgNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKifdpkrsksyrnVSCSSTVCSSlesatgnipgcaSNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLFRGAAGLLGLGRNKISLVYQTASKYKKRFSYCLpssssstghltfGPGIKKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS
MKEKGAATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNvscsstvcssLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNrglfrgaagllglgrNKISLVYQTASKYKKRFSYCLPSSSSSTGHLTFGPGIKKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS
********LPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFD******YRNVSCSSTVCSSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLFRGAAGLLGLGRNKISLVYQTASKYKKRFSYCLP*******HLTFGPGIKKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAA****
******A***AIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQ**************NVSCSSTVCSSLESA********SNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLFRGAAGLLGLGRNKISLVYQTASKYKKRFSYCLPSSS*ST*H****PGIKKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSK*****AVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC*
********LPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLFRGAAGLLGLGRNKISLVYQTASKYKKRFSYCLPSSSSSTGHLTFGPGIKKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS
*****AATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIP***SNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLFRGAAGLLGLGRNKISLVYQTASKYKKRFSYCLPSSSSSTGHLTFGPGIKKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC*
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iiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKEKGAATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLFRGAAGLLGLGRNKISLVYQTASKYKKRFSYCLPSSSSSTGHLTFGPGIKKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query364 2.2.26 [Sep-21-2011]
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.934 0.68 0.379 1e-57
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.939 0.727 0.388 2e-56
Q766C2438 Aspartic proteinase nepen N/A no 0.917 0.762 0.371 1e-51
Q766C3437 Aspartic proteinase nepen N/A no 0.914 0.762 0.362 4e-49
Q6XBF8437 Aspartic proteinase CDR1 no no 0.961 0.800 0.367 7e-46
Q3EBM5447 Probable aspartic proteas no no 0.928 0.756 0.341 6e-35
Q9S9K4475 Aspartic proteinase-like no no 0.909 0.696 0.259 6e-26
Q9LZL3453 Aspartic proteinase PCS1 no no 0.890 0.715 0.267 2e-20
Q0IU52410 Aspartic proteinase Asp1 no no 0.538 0.478 0.316 2e-16
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.689 0.612 0.277 3e-16
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function desciption
 Score =  223 bits (569), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 202/369 (54%), Gaps = 29/369 (7%)

Query: 8   TLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDP 67
           T P + G+  GSG Y   +G+GTP ++  L+ DTGSD+ W QC+PC   CYQQ + +F+P
Sbjct: 148 TTPVVSGASQGSGEYFSRIGVGTPAKEMYLVLDTGSDVNWIQCEPCAD-CYQQSDPVFNP 206

Query: 68  KRSKSYRNVSCSSTVCSSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTS 127
             S +Y++++CS+  CS LE++      C SNK C+Y + YGD SF+VG  A +T+T  +
Sbjct: 207 TSSSTYKSLTCSAPQCSLLETS-----ACRSNK-CLYQVSYGDGSFTVGELATDTVTFGN 260

Query: 128 KDVFPKFLLGCGQNNRGLFRGAAGLLGLGRNKISLVYQTASKYKKRFSYCL------PSS 181
                   LGCG +N GLF GAAGLLGLG   +S+  Q  +     FSYCL       SS
Sbjct: 261 SGKINNVALGCGHDNEGLFTGAAGLLGLGGGVLSITNQMKA---TSFSYCLVDRDSGKSS 317

Query: 182 SSSTGHLTFGPGIKKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTP---- 237
           S     +  G G   +    PL    +  +FY + ++G SVGGEK+ +   +F       
Sbjct: 318 SLDFNSVQLGGGDATA----PLLRNKKIDTFYYVGLSGFSVGGEKVVLPDAIFDVDASGS 373

Query: 238 -GTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPT-APAVSILDTCYDFSEHETITIPKI 295
            G I+D GT +TRL   AY  L+ AF +L       + ++S+ DTCYDFS   T+ +P +
Sbjct: 374 GGVILDCGTAVTRLQTQAYNSLRDAFLKLTVNLKKGSSSISLFDTCYDFSSLSTVKVPTV 433

Query: 296 SFFFNGGVEVDVDVTGIMFPIRAS-QVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHG 354
           +F F GG  +D+     + P+  S   C AFA  S  S + I GNVQQ    + YD++  
Sbjct: 434 AFHFTGGKSLDLPAKNYLIPVDDSGTFCFAFAPTS--SSLSIIGNVQQQGTRITYDLSKN 491

Query: 355 QVGFAAGGC 363
            +G +   C
Sbjct: 492 VIGLSGNKC 500
Aspartic protease involved in drought avoidance through abscisic acid signaling.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query364
255548664 494 Aspartic proteinase nepenthesin-2 precur 0.997 0.734 0.708 1e-135
225430555 481 PREDICTED: aspartic proteinase nepenthes 0.991 0.750 0.635 1e-132
22326716 474 aspartyl protease family protein [Arabid 0.997 0.765 0.646 1e-132
8979711446 nucleoid DNA-binding protein cnd41-like 0.997 0.813 0.646 1e-132
297811185 475 hypothetical protein ARALYDRAFT_325615 [ 0.997 0.764 0.643 1e-131
449466304 473 PREDICTED: protein ASPARTIC PROTEASE IN 0.997 0.767 0.623 1e-131
24430421 502 41 kD chloroplast nucleoid DNA binding p 0.978 0.709 0.633 1e-130
2541876 502 CND41, chloroplast nucleoid DNA binding 0.978 0.709 0.628 1e-129
356527089 488 PREDICTED: aspartic proteinase nepenthes 0.964 0.719 0.639 1e-129
225430551 490 PREDICTED: aspartic proteinase nepenthes 0.980 0.728 0.644 1e-128
>gi|255548664|ref|XP_002515388.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] gi|223545332|gb|EEF46837.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 258/364 (70%), Positives = 295/364 (81%), Gaps = 1/364 (0%)

Query: 1   MKEKGAATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQ 60
           +K   A TLPA  GS++GSGNY VTVG+GTPK+ FSLIFDTGSDLTWTQC+PCV  CY Q
Sbjct: 132 VKATAATTLPAKDGSIIGSGNYFVTVGLGTPKKDFSLIFDTGSDLTWTQCEPCVKSCYNQ 191

Query: 61  KEKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAK 120
           KE IF+P +S SY N+SC ST+C SL SATGNI  CAS+ TCVYGIQYGDSSFS+GFF K
Sbjct: 192 KEAIFNPSQSTSYANISCGSTLCDSLASATGNIFNCASS-TCVYGIQYGDSSFSIGFFGK 250

Query: 121 ETLTLTSKDVFPKFLLGCGQNNRGLFRGAAGLLGLGRNKISLVYQTASKYKKRFSYCLPS 180
           E L+LT+ DVF  F  GCGQNN+GLF GAAGLLGLGR+K+SLV QTA +Y K FSYCLPS
Sbjct: 251 EKLSLTATDVFNDFYFGCGQNNKGLFGGAAGLLGLGRDKLSLVSQTAQRYNKIFSYCLPS 310

Query: 181 SSSSTGHLTFGPGIKKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTI 240
           SSSSTG LTFG    KS  FTPL++   GSSFYGLD+TGISVGG KL I+ +VFST GTI
Sbjct: 311 SSSSTGFLTFGGSTSKSASFTPLATISGGSSFYGLDLTGISVGGRKLAISPSVFSTAGTI 370

Query: 241 IDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFN 300
           IDSGTVITRLPP AY+ L + FR+LMS+YP APA+SILDTC+DFS H+TI++PKI  FF+
Sbjct: 371 IDSGTVITRLPPAAYSALSSTFRKLMSQYPAAPALSILDTCFDFSNHDTISVPKIGLFFS 430

Query: 301 GGVEVDVDVTGIMFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAA 360
           GGV VD+D TGI +    +QVCLAFAGNSD SDV IFGNVQQ TLEVVYD A G+VGFA 
Sbjct: 431 GGVVVDIDKTGIFYVNDLTQVCLAFAGNSDASDVAIFGNVQQKTLEVVYDGAAGRVGFAP 490

Query: 361 GGCS 364
            GCS
Sbjct: 491 AGCS 494

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225430555|ref|XP_002285593.1| PREDICTED: aspartic proteinase nepenthesin-2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|22326716|ref|NP_196638.2| aspartyl protease family protein [Arabidopsis thaliana] gi|18700103|gb|AAL77663.1| AT5g10770/T30N20_40 [Arabidopsis thaliana] gi|24111269|gb|AAN46758.1| At5g10770/T30N20_40 [Arabidopsis thaliana] gi|332004211|gb|AED91594.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8979711|emb|CAB96832.1| nucleoid DNA-binding protein cnd41-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297811185|ref|XP_002873476.1| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] gi|297319313|gb|EFH49735.1| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449466304|ref|XP_004150866.1| PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Cucumis sativus] gi|449485213|ref|XP_004157102.1| PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|24430421|dbj|BAC22609.1| 41 kD chloroplast nucleoid DNA binding protein (CND41) [Nicotiana sylvestris] Back     alignment and taxonomy information
>gi|2541876|dbj|BAA22813.1| CND41, chloroplast nucleoid DNA binding protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|356527089|ref|XP_003532146.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|225430551|ref|XP_002283470.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query364
TAIR|locus:2183730474 AT5G10770 "AT5G10770" [Arabido 0.997 0.765 0.594 4.5e-114
TAIR|locus:2183715464 AT5G10760 [Arabidopsis thalian 0.964 0.756 0.524 3e-92
TAIR|locus:2017799484 AT1G79720 [Arabidopsis thalian 0.956 0.719 0.407 2.6e-63
TAIR|locus:2035297485 AT1G01300 [Arabidopsis thalian 0.961 0.721 0.371 1.3e-59
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.947 0.714 0.366 2e-56
TAIR|locus:2095365470 AT3G20015 [Arabidopsis thalian 0.939 0.727 0.341 2.6e-54
TAIR|locus:2031225483 AT1G25510 [Arabidopsis thalian 0.936 0.706 0.365 4.9e-53
TAIR|locus:2095042500 ASPG1 "ASPARTIC PROTEASE IN GU 0.945 0.688 0.334 8e-53
TAIR|locus:2145954437 CDR1 "CONSTITUTIVE DISEASE RES 0.920 0.766 0.344 7.3e-43
TAIR|locus:2010786431 AT1G64830 [Arabidopsis thalian 0.914 0.772 0.332 8.4e-42
TAIR|locus:2183730 AT5G10770 "AT5G10770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
 Identities = 217/365 (59%), Positives = 260/365 (71%)

Query:     1 MKEKGAATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQ 60
             + E  +  LPA  GS +GSGNYIVTVG+GTPK   SLIFDTGSDLTWTQC+PCV  CY Q
Sbjct:   111 VSESKSTDLPAKDGSTLGSGNYIVTVGLGTPKNDLSLIFDTGSDLTWTQCQPCVRTCYDQ 170

Query:    61 KEKIFDPKRSKSYRNXXXXXXXXXXLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAK 120
             KE IF+P +S SY N          L SATGN   C+++  C+YGIQYGD SFSVGF AK
Sbjct:   171 KEPIFNPSKSTSYYNVSCSSAACGSLSSATGNAGSCSASN-CIYGIQYGDQSFSVGFLAK 229

Query:   121 ETLTLTSKDVFPKFLLGCGQNNXXXXXXXXXXXXXXXNKISLVYQTASKYKKRFSYCLPS 180
             E  TLT+ DVF     GCG+NN               +K+S   QTA+ Y K FSYCLPS
Sbjct:   230 EKFTLTNSDVFDGVYFGCGENNQGLFTGVAGLLGLGRDKLSFPSQTATAYNKIFSYCLPS 289

Query:   181 SSSSTGHLTFGP-GIKKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGT 239
             S+S TGHLTFG  GI +SVKFTP+S+   G+SFYGL++  I+VGG+KLPI +TVFSTPG 
Sbjct:   290 SASYTGHLTFGSAGISRSVKFTPISTITDGTSFYGLNIVAITVGGQKLPIPSTVFSTPGA 349

Query:   240 IIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFF 299
             +IDSGTVITRLPP AY  L+++F+  MSKYPT   VSILDTC+D S  +T+TIPK++F F
Sbjct:   350 LIDSGTVITRLPPKAYAALRSSFKAKMSKYPTTSGVSILDTCFDLSGFKTVTIPKVAFSF 409

Query:   300 NGGVEVDVDVTGIMFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFA 359
             +GG  V++   GI +  + SQVCLAFAGNSD S+  IFGNVQQ TLEVVYD A G+VGFA
Sbjct:   410 SGGAVVELGSKGIFYVFKISQVCLAFAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFA 469

Query:   360 AGGCS 364
               GCS
Sbjct:   470 PNGCS 474
GO:0003677 "DNA binding" evidence=ISS
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
TAIR|locus:2183715 AT5G10760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017799 AT1G79720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095365 AT3G20015 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145954 CDR1 "CONSTITUTIVE DISEASE RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010786 AT1G64830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691
3rd Layer3.4.23.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT5G10770
chloroplast nucleoid DNA-binding protein, putative; chloroplast nucleoid DNA-binding protein, putative; FUNCTIONS IN- DNA binding, aspartic-type endopeptidase activity; INVOLVED IN- proteolysis; EXPRESSED IN- 12 plant structures; EXPRESSED DURING- 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s- Peptidase aspartic, catalytic (InterPro-IPR009007), Peptidase A1 (InterPro-IPR001461); BEST Arabidopsis thaliana protein match is- aspartyl protease family protein (TAIR-AT5G10760.1); Has 2665 Blast hits to 2650 pro [...] (474 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT2G05440
glycine-rich protein; glycine-rich protein; FUNCTIONS IN- molecular_function unknown; INVOLVED [...] (154 aa)
      • 0.885
AT2G33160
glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; glycoside [...] (664 aa)
      • 0.690
AT5G43060
cysteine proteinase, putative / thiol protease, putative; cysteine proteinase, putative / thiol [...] (463 aa)
      • 0.679
GRP18
GRP18 (GLYCINE-RICH PROTEIN 18); lipid binding / nutrient reservoir; encodes a glycine-rich pro [...] (228 aa)
      • 0.657
SKS6
SKS6 (SKU5-SIMILAR 6); pectinesterase; SKU5-SIMILAR 6 (SKS6); FUNCTIONS IN- pectinesterase acti [...] (542 aa)
      • 0.643
AT3G48460
GDSL-motif lipase/hydrolase family protein; GDSL-motif lipase/hydrolase family protein; FUNCTIO [...] (381 aa)
      • 0.625
AT1G29670
GDSL-motif lipase/hydrolase family protein; GDSL-motif lipase/hydrolase family protein; FUNCTIO [...] (363 aa)
      • 0.625
AT3G43270
pectinesterase family protein; pectinesterase family protein; FUNCTIONS IN- enzyme inhibitor ac [...] (527 aa)
      • 0.599
AT4G01610
cathepsin B-like cysteine protease, putative; cathepsin B-like cysteine protease, putative; FUN [...] (359 aa)
      • 0.577
AT4G37950
lyase; lyase; FUNCTIONS IN- lyase activity; INVOLVED IN- biological_process unknown; EXPRESSED [...] (678 aa)
      • 0.563

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 1e-143
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 5e-71
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 2e-67
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 2e-40
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 9e-25
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 4e-22
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 1e-20
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 9e-20
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 5e-14
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 5e-12
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 1e-10
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 1e-09
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 8e-09
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 3e-06
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 5e-06
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 1e-05
cd05473364 cd05473, beta_secretase_like, Beta-secretase, aspa 4e-05
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 2e-04
PTZ00013450 PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisiona 5e-04
cd05487326 cd05487, renin_like, Renin stimulates production o 0.002
cd06098317 cd06098, phytepsin, Phytepsin, a plant homolog of 0.002
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 0.003
cd05486316 cd05486, Cathespin_E, Cathepsin E, non-lysosomal a 0.003
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information 
 Score =  407 bits (1047), Expect = e-143
 Identities = 169/347 (48%), Positives = 210/347 (60%), Gaps = 52/347 (14%)

Query: 21  NYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSS 80
            Y+VTVG+GTP R  ++I DTGSDLTW QC+PC                           
Sbjct: 1   EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC--------------------------- 33

Query: 81  TVCSSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQ 140
                                C+Y + YGD S++ G  A +TLTL S DV P F  GCG 
Sbjct: 34  ---------------------CLYQVSYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGH 72

Query: 141 NNRGLFRGAAGLLGLGRNKISLVYQTASKYKKRFSYCLPS-SSSSTGHLTFG--PGIKKS 197
           +N GLF GAAGLLGLGR K+SL  QTAS Y   FSYCLP  SSSS+G+L+FG    +   
Sbjct: 73  DNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSSSGYLSFGAAASVPAG 132

Query: 198 VKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDSGTVITRLPPHAYTV 257
             FTP+ S  +  +FY + +TGISVGG +LPI    F   G IIDSGTVITRLPP AY  
Sbjct: 133 ASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAA 192

Query: 258 LKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIR 317
           L+ AFR  M+ YP AP  SILDTCYD S   ++++P +S  F GG +V++D +G+++P+ 
Sbjct: 193 LRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVD 252

Query: 318 -ASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGC 363
            +SQVCLAFAG SD   + I GNVQQ T  VVYDVA G++GFA GGC
Sbjct: 253 DSSQVCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 299
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|140051 PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 364
PLN03146431 aspartyl protease family protein; Provisional 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.96
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.92
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.88
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 98.15
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 97.25
PF1365090 Asp_protease_2: Aspartyl protease 96.64
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.86
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.5
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 95.48
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 94.65
COG3577215 Predicted aspartyl protease [General function pred 94.19
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 93.23
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 93.17
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 93.05
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 91.34
PF1365090 Asp_protease_2: Aspartyl protease 88.67
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 86.65
PF12384177 Peptidase_A2B: Ty3 transposon peptidase; InterPro: 85.74
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 85.66
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 83.66
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 83.28
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 81.85
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 81.79
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2e-58  Score=440.73  Aligned_cols=346  Identities=37%  Similarity=0.681  Sum_probs=286.8

Q ss_pred             cccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCc
Q 017894            7 ATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSL   86 (364)
Q Consensus         7 ~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~   86 (364)
                      ...|+..+...+++.|+++|.||||||++.|++||||+++||+|.+|. .|..+..+.|||++|+||+.++|.++.|...
T Consensus        70 ~~~~~~~~~~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~-~C~~~~~~~fdps~SST~~~~~C~s~~C~~~  148 (431)
T PLN03146         70 SPNDPQSDLISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD-DCYKQVSPLFDPKKSSTYKDVSCDSSQCQAL  148 (431)
T ss_pred             cCCccccCcccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc-ccccCCCCcccCCCCCCCcccCCCCcccccC
Confidence            345777666677889999999999999999999999999999999995 5987777899999999999999999999765


Q ss_pred             ccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCC----CccCCeEEeeccCCCCCCC-CcCeEEecCCCCCh
Q 017894           87 ESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSK----DVFPKFLLGCGQNNRGLFR-GAAGLLGLGRNKIS  161 (364)
Q Consensus        87 ~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~----~~~~~~~fg~a~~~~~~~~-~~~GilGLg~~~~s  161 (364)
                      ..    ...|..++.|.|.+.|++|+.+.|.+++|+|+|++.    ..++++.|||++...+.+. ..+||||||+.+++
T Consensus       149 ~~----~~~c~~~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~S  224 (431)
T PLN03146        149 GN----QASCSDENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLS  224 (431)
T ss_pred             CC----CCCCCCCCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCcc
Confidence            43    234766667999999999987899999999999973    2488999999998876554 58999999999999


Q ss_pred             hHHHhhhhcCCcEEEeCCCCC---CCceeEEeCCCC--C-CCceEeecccCCCCCcceEEEeeEEEECCEEeeeccccCC
Q 017894          162 LVYQTASKYKKRFSYCLPSSS---SSTGHLTFGPGI--K-KSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFS  235 (364)
Q Consensus       162 ~~~q~~~~~~~~fsl~l~~~~---~~~g~l~fGg~d--~-~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~  235 (364)
                      ++.|+.....++||+||.+..   ...|.|+||+..  . +.+.|+|+..+.. ..+|.|.|++|+|+++.++++...+.
T Consensus       225 l~sql~~~~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~  303 (431)
T PLN03146        225 LISQLGSSIGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKN  303 (431)
T ss_pred             HHHHhhHhhCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccc
Confidence            999987654579999997532   247999999954  2 3589999986422 57899999999999999877655431


Q ss_pred             ---CCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCCce
Q 017894          236 ---TPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGI  312 (364)
Q Consensus       236 ---~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~~~  312 (364)
                         .+.+||||||++++||+++|++|.+++...+...........+..||....  ...+|+|+|+| +|+++.|++++|
T Consensus       304 ~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F-~Ga~~~l~~~~~  380 (431)
T PLN03146        304 GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIITAHF-TGADVKLQPLNT  380 (431)
T ss_pred             cCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEEEEE-CCCeeecCccee
Confidence               246999999999999999999999999988753322222334567887432  24789999999 589999999999


Q ss_pred             EEEcCCCeEEEEEEcCCCCCCeeEecccceeeeEEEEECCCCEEEEEeCCCC
Q 017894          313 MFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS  364 (364)
Q Consensus       313 ~~~~~~~~~C~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~c~  364 (364)
                      +++...+..|+++...   .+.+|||..|||++|++||++++|||||+++|.
T Consensus       381 ~~~~~~~~~Cl~~~~~---~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~  429 (431)
T PLN03146        381 FVKVSEDLVCFAMIPT---SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT  429 (431)
T ss_pred             EEEcCCCcEEEEEecC---CCceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence            9987667789988754   235999999999999999999999999999995

>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>COG3577 Predicted aspartyl protease [General function prediction only] Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
2rmp_A361 Rmp-Pepstatin A Complex Length = 361 7e-08
2ewy_A383 Crystal Structure Of Human Bace2 In Complex With A 7e-07
1t6e_X381 Crystal Structure Of The Triticum Aestivum Xylanase 4e-06
1g0v_A329 The Structure Of Proteinase A Complexed With A Ia3 2e-05
3vla_A413 Crystal Structure Of Edgp Length = 413 3e-05
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 3e-05
1uh7_A325 Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt 5e-05
2jxr_A329 Structure Of Yeast Proteinase A Length = 329 6e-05
1dp5_A329 The Structure Of Proteinase A Complexed With A Ia3 9e-05
2b42_A381 Crystal Structure Of The Triticum Xylanse Inhibitor 9e-05
3apr_E325 Binding Of A Reduced Peptide Inhibitor To The Aspar 1e-04
1b5f_A239 Native Cardosin A From Cynara Cardunculus L. Length 2e-04
1mpp_A361 X-Ray Analyses Of Aspartic Proteinases. V. Structur 2e-04
1pso_E326 The Crystal Structure Of Human Pepsin And Its Compl 4e-04
1flh_A326 Crystal Structure Of Human Uropepsin At 2.45 A Reso 4e-04
1htr_B329 Crystal And Molecular Structures Of Human Progastri 4e-04
4aa9_A320 Camel Chymosin At 1.6a Resolution Length = 320 7e-04
4b1c_A375 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 8e-04
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex Length = 361 Back     alignment and structure 
Iteration: 1

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 143/361 (39%), Gaps = 51/361 (14%)
Query: 22  YIVTVGIGTPKRKFSLIFDTGSDLTW------TQCKPCVGFCYQQKEKIFDPKRSKSYRN 75
           Y + V IGTP + F L+FDTGS  TW      T+ + CVG       + FDP  S +++ 
Sbjct: 20  YAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVG------SRFFDPSASSTFK- 72
Query: 76  XXXXXXXXXXLESATGNIPGCASNKTCVYG--------IQYGDSSFSVGFFAKETLTLTS 127
                     +   TG   G     +   G        + Y D+    G  A+++    +
Sbjct: 73  ---ATNYNLNITYGTGGANGLYFEDSIAIGDITVTKQILAYVDNV--RGPTAEQS---PN 124
Query: 128 KDVFPKFLLGCG--QNNXXXXXXXXXXXXXXXNKISLVYQTASKYKKRFSYCLPSSSSST 185
            D+F   L G     N                N    +Y+        FS  + +++S T
Sbjct: 125 ADIFLDGLFGAAYPDNTAMEAEYGSTYNTVHVN----LYKQGLISSPLFSVYM-NTNSGT 179
Query: 186 GHLTFGPGIKKS-----VKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTI 240
           G + FG G+  +     + +T + S + G  F+   +TGI+V G     A   FS P   
Sbjct: 180 GEVVFG-GVNNTLLGGDIAYTDVMSRYGGYYFWDAPVTGITVDGS----AAVRFSRPQAF 234
Query: 241 -IDSGTVITRLPPHAYT-VLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFF 298
            ID+GT    +P  A + ++K A   L     T     +    Y  S+     + + S  
Sbjct: 235 TIDTGTNFFIMPSSAASKIVKAA---LPDATETQQGWVVPCASYQNSKSTISIVMQKSGS 291
Query: 299 FNGGVEVDVDVTGIMFPIRASQVCLAFAGNSDPSDVGIFGNVQQHTLEVVYDVAHGQVGF 358
            +  +E+ V V+ ++ P+  S     F    D  +  I GN+       VYD  + ++GF
Sbjct: 292 SSDTIEISVPVSKMLLPVDQSNETCMFIILPDGGNQYIVGNLFLRFFVNVYDFGNNRIGF 351
Query: 359 A 359
           A
Sbjct: 352 A 352
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383 Back     alignment and structure
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor I Length = 381 Back     alignment and structure
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant, Mvv Length = 329 Back     alignment and structure
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325 Back     alignment and structure
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A Length = 329 Back     alignment and structure
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant Inhibitor Length = 329 Back     alignment and structure
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In Complex With Bacillus Subtilis Xylanase Length = 381 Back     alignment and structure
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325 Back     alignment and structure
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L. Length = 239 Back     alignment and structure
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And Refinement At 2.0 Angstroms Resolution Of The Aspartic Proteinase From Mucor Pusillus Length = 361 Back     alignment and structure
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With Pepstatin Length = 326 Back     alignment and structure
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution Length = 326 Back     alignment and structure
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329 Back     alignment and structure
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution Length = 320 Back     alignment and structure
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 375 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 8e-95
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 3e-86
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 2e-79
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 2e-28
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 5e-27
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 5e-26
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 3e-25
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 1e-23
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 1e-23
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 2e-23
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 5e-23
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 7e-23
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 1e-22
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 3e-22
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 1e-21
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 2e-21
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 6e-21
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 1e-20
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 2e-20
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 3e-20
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 6e-20
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 8e-20
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 1e-19
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 2e-19
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 1e-18
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 2e-18
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 1e-17
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 2e-17
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 4e-17
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 5e-17
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 8e-15
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 2e-14
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 2e-09
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  287 bits (735), Expect = 8e-95
 Identities = 78/396 (19%), Positives = 131/396 (33%), Gaps = 45/396 (11%)

Query: 2   KEKGAATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQK 61
           K      LP  +     +G +   +   TP  +  ++ D   +  W  C+         +
Sbjct: 5   KPINLVVLPVQNDG--STGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYS-SKTYQ 61

Query: 62  EKIFDPKRSKSYRNVSCSSTVCSSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKE 121
                  +        C S   +S        PGC  N   +           +G   ++
Sbjct: 62  APFCHSTQCSRANTHQCLSCPAASR-------PGCHKNTCGLMSTNPITQQTGLGELGED 114

Query: 122 TLTLTSKD----------VFPKFLLGCGQN---NRGLFRGAAGLLGLGRNKISLVYQTAS 168
            L + +              P+FL  C  +    +GL R   G+ GLG   ISL  Q AS
Sbjct: 115 VLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLAS 174

Query: 169 KY--KKRFSYCLPSSSSSTGHLTFGPG-----------IKKSVKFTPLSSAFQGSSFYGL 215
            +  +++F+ CL    +S G + FG             I   + FTPL+   Q    Y +
Sbjct: 175 HFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQ--GEYNV 232

Query: 216 DMTGISVGGEKLPIATTVFSTP------GTIIDSGTVITRLPPHAYTVLKTAFRQLMSKY 269
            +  I +    +     + ST       GT+I + T    L    Y      F Q + K 
Sbjct: 233 RVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQ 292

Query: 270 PTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVTGIMFPIRASQVCLAFA-GN 328
               +V+    C++ ++        +      G    +    +M   +    CL    G 
Sbjct: 293 AQVKSVAPFGLCFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGG 352

Query: 329 SDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGGCS 364
             P      G  Q     VV+D+A  +VGF+     
Sbjct: 353 MQPRAEITLGARQLEENLVVFDLARSRVGFSTSSLH 388
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query364
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.89
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.72
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 93.77
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 93.0
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 88.18
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 84.26
2hs1_A99 HIV-1 protease; ultra-high resolution active site 83.85
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 82.56
3ec0_A99 Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1 81.42
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=6.4e-59  Score=442.55  Aligned_cols=343  Identities=25%  Similarity=0.423  Sum_probs=282.1

Q ss_pred             CCCCcccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCc
Q 017894            3 EKGAATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTV   82 (364)
Q Consensus         3 ~~~~~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~   82 (364)
                      +..++.+||+.  +..+++|+++|.||||||++.|++||||+++||+|..|              .+|+||+.++|.++.
T Consensus         5 ~~~~~~~pv~~--d~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c--------------~~Sst~~~v~C~s~~   68 (413)
T 3vla_A            5 RPSALVVPVKK--DASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN--------------YVSSTYRPVRCRTSQ   68 (413)
T ss_dssp             CCSEEEEEEEE--CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS--------------CCCTTCEECBTTSHH
T ss_pred             CCccEEEEeee--cCCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC--------------CCCCCcCccCCCccc
Confidence            34578899995  66899999999999999999999999999999999865              379999999999999


Q ss_pred             cCCcccCCCC------CCCCCCCCcceeeEEeC-CCCceEEEEEEEEEEecC--------CCccCCeEEeeccCC--CCC
Q 017894           83 CSSLESATGN------IPGCASNKTCVYGIQYG-DSSFSVGFFAKETLTLTS--------KDVFPKFLLGCGQNN--RGL  145 (364)
Q Consensus        83 c~~~~~~~~~------~~~c~~~~~~~~~~~y~-~g~~~~G~~~~D~v~i~~--------~~~~~~~~fg~a~~~--~~~  145 (364)
                      |...+.+.-.      .+.|.. +.|.|.+.|+ +++...|++++|+|+|+.        ...++++.|||+...  .+.
T Consensus        69 C~~~~~~~~~~c~s~~~~~c~~-~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~  147 (413)
T 3vla_A           69 CSLSGSIACGDCFNGPRPGCNN-NTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNL  147 (413)
T ss_dssp             HHHTTCCEEECCSSCCBTTBCS-SEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTS
T ss_pred             ccccccCCCcccccCCCCCCCC-CcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCc
Confidence            9877654211      123443 4799999994 777789999999999972        136788999999986  445


Q ss_pred             CCCcCeEEecCCCCChhHHHhhhhc--CCcEEEeCCCCCCCceeEEeCCCCC---------CC-ceEeecccCCCC----
Q 017894          146 FRGAAGLLGLGRNKISLVYQTASKY--KKRFSYCLPSSSSSTGHLTFGPGIK---------KS-VKFTPLSSAFQG----  209 (364)
Q Consensus       146 ~~~~~GilGLg~~~~s~~~q~~~~~--~~~fsl~l~~~~~~~g~l~fGg~d~---------~~-l~~~p~~~~~~~----  209 (364)
                      +..++||||||+.+++++.|+..+.  +++||+||.+.....|.|+||+.|.         ++ +.|+|+..++..    
T Consensus       148 ~~~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~  227 (413)
T 3vla_A          148 ASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSAT  227 (413)
T ss_dssp             CTTCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSS
T ss_pred             ccccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCcccccc
Confidence            6689999999999999999998763  5999999998655689999999873         46 999999986422    


Q ss_pred             ------CcceEEEeeEEEECCEEeeeccccCC-----CCCEEEecCCcceecChhHHHHHHHHHHHHHh--cCCCCCCcc
Q 017894          210 ------SSFYGLDMTGISVGGEKLPIATTVFS-----TPGTIIDSGTVITRLPPHAYTVLKTAFRQLMS--KYPTAPAVS  276 (364)
Q Consensus       210 ------~~~w~v~l~~i~v~~~~~~~~~~~~~-----~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~--~~~~~~~~~  276 (364)
                            ..+|.|.|++|+|+++.+.++...+.     .+.+||||||++++||.+++++|.+++.+.+.  .+++.....
T Consensus       228 ~~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~  307 (413)
T 3vla_A          228 STQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVA  307 (413)
T ss_dssp             CCTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCT
T ss_pred             ccccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCC
Confidence                  26999999999999999987755442     24799999999999999999999999999865  343333344


Q ss_pred             ccccceeccCCcc----ccCCeEEEEEcC-CcEEEeCCCceEEEcCCCeEEEEEEcCCCC-CCeeEecccceeeeEEEEE
Q 017894          277 ILDTCYDFSEHET----ITIPKISFFFNG-GVEVDVDVTGIMFPIRASQVCLAFAGNSDP-SDVGIFGNVQQHTLEVVYD  350 (364)
Q Consensus       277 ~~~~c~~~~~~~~----~~~P~i~~~~~g-~~~~~i~~~~~~~~~~~~~~C~~~~~~~~~-~~~~ilG~~fl~~~y~vfD  350 (364)
                      .+..|+.+++...    ..+|+|+|+|.| +++|+|++++|+++...+..|++|+..+.. ...||||..|||++|+|||
T Consensus       308 ~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD  387 (413)
T 3vla_A          308 PFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFD  387 (413)
T ss_dssp             TCSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEEE
T ss_pred             CCcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEEE
Confidence            5678999876532    579999999954 489999999999986657899988776432 3579999999999999999


Q ss_pred             CCCCEEEEEeCC
Q 017894          351 VAHGQVGFAAGG  362 (364)
Q Consensus       351 ~~~~rigfa~~~  362 (364)
                      ++++|||||++.
T Consensus       388 ~~~~riGfa~~~  399 (413)
T 3vla_A          388 LATSRVGFSGTL  399 (413)
T ss_dssp             TTTTEEEEEEEG
T ss_pred             CCCCEEEEEEec
Confidence            999999999853
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 364
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 3e-56
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 1e-38
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 3e-36
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 5e-36
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 6e-36
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 2e-33
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 8e-33
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 1e-32
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 1e-32
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 2e-32
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 2e-32
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 4e-32
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 8e-32
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 1e-31
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 6e-31
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 4e-30
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 5e-30
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 2e-29
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 3e-28
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 1e-27
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 2e-25
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 1e-24
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  186 bits (471), Expect = 3e-56
 Identities = 69/374 (18%), Positives = 121/374 (32%), Gaps = 49/374 (13%)

Query: 19  SGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSC 78
           +  Y +    G       L+ D    L W+ C        +          + +Y    C
Sbjct: 13  TSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQ-PPAEIPCSSPTCLLANAYPAPGC 66

Query: 79  SSTVCSSLESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKD-------VF 131
            +  C S                  Y       + + G  +       + D       V 
Sbjct: 67  PAPSCGS---------DKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVN 117

Query: 132 PKFLLGCGQNN--RGLFRGAAGLLGLGRNKISLVYQTASKYKKRFSYCLPSSSSSTGHLT 189
              L  C  +     L RG+ G+ GL  + ++L  Q AS  K    + L   +   G   
Sbjct: 118 VGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAI 177

Query: 190 FGPG------IKKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIATTVFSTPGTIIDS 243
           FG G        +S+ +TPL +   GS  + +    I VG  ++P+     +T G ++ +
Sbjct: 178 FGGGPVPWPQFTQSMPYTPLVT-KGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLST 236

Query: 244 GTVITRLPPHAYTVLKTAFRQLMSKYP--------TAPAVSILDTCYDFSEHE----TIT 291
                 L P  Y  L  AF + ++              AV+    CYD            
Sbjct: 237 RLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYA 296

Query: 292 IPKISFFFNGGVEVDVDVTGIMFPIRASQVCLAFA------GNSDPSDVGIFGNVQQHTL 345
           +P +    +GG +  +     M  ++    C+AF            +   I G  Q    
Sbjct: 297 VPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDF 356

Query: 346 EVVYDVAHGQVGFA 359
            + +D+   ++GF+
Sbjct: 357 VLDFDMEKKRLGFS 370
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query364
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d2nmza199 Human immunodeficiency virus type 1 protease {Huma 81.65
d4fiva_113 Feline immunodeficiency virus (FIV) protease {Feli 81.18
d2fmba_104 EIAV protease {Equine infectious anemia virus [Tax 80.32
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.9e-54  Score=403.08  Aligned_cols=305  Identities=23%  Similarity=0.382  Sum_probs=252.4

Q ss_pred             cccccccCCccCCccEEEEEEeCCCCcEEEEEEEcCCcceeEeCCCcccCcCCCCCCCCCCCCCCcccccCCCCCccCCc
Q 017894            7 ATLPAIHGSVVGSGNYIVTVGIGTPKRKFSLIFDTGSDLTWTQCKPCVGFCYQQKEKIFDPKRSKSYRNVSCSSTVCSSL   86 (364)
Q Consensus         7 ~~~p~~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTgS~~~wv~~~~c~~~c~~~~~~~y~~s~Sst~~~~~~~~~~c~~~   86 (364)
                      .+.||+   ++.+.+|+++|.||||||++.|++||||+++||+|..|.. |..+....|||++|+||+..          
T Consensus        46 ~~~~l~---n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~-~~~~~~~~yd~~~Sst~~~~----------  111 (370)
T d3psga_          46 GDEPLE---NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSS-LACSDHNQFNPDDSSTFEAT----------  111 (370)
T ss_dssp             CCCTTG---GGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCS-GGGTTSCCBCGGGCTTCEEE----------
T ss_pred             cccccc---cccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCCC-cccccccccCCCcccccccC----------
Confidence            346776   6778999999999999999999999999999999999943 66666689999999999987          


Q ss_pred             ccCCCCCCCCCCCCcceeeEEeCCCCceEEEEEEEEEEecCCCccCCeEEeeccCCCCCC---CCcCeEEecCCCCCh--
Q 017894           87 ESATGNIPGCASNKTCVYGIQYGDSSFSVGFFAKETLTLTSKDVFPKFLLGCGQNNRGLF---RGAAGLLGLGRNKIS--  161 (364)
Q Consensus        87 ~~~~~~~~~c~~~~~~~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~fg~a~~~~~~~---~~~~GilGLg~~~~s--  161 (364)
                                    .|.|.+.|++|+ +.|.++.|++.+++ ..+.++.|+++....+.+   ...+||+|||++..+  
T Consensus       112 --------------~~~~~~~Yg~Gs-~~G~~~~d~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~  175 (370)
T d3psga_         112 --------------SQELSITYGTGS-MTGILGYDTVQVGG-ISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISAS  175 (370)
T ss_dssp             --------------EEEEEEESSSCE-EEEEEEEEEEEETT-EEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGG
T ss_pred             --------------CCcEEEEeCCce-EEEEEEEEEEeeec-eeeeeeEEEEEeeccCceecccccccccccccCccccc
Confidence                          589999999997 89999999999999 699999999999886532   378999999986533  


Q ss_pred             ----hHHHhhhhc---CCcEEEeCCCCCCCceeEEeCCCC----CCCceEeecccCCCCCcceEEEeeEEEECCEEeeec
Q 017894          162 ----LVYQTASKY---KKRFSYCLPSSSSSTGHLTFGPGI----KKSVKFTPLSSAFQGSSFYGLDMTGISVGGEKLPIA  230 (364)
Q Consensus       162 ----~~~q~~~~~---~~~fsl~l~~~~~~~g~l~fGg~d----~~~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~  230 (364)
                          +..++....   ++.|++|+.+....+|.|+|||+|    .+++.|+|+..    ..+|.+.++++.++|+.+...
T Consensus       176 ~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~----~~~w~v~~~~i~v~g~~~~~~  251 (370)
T d3psga_         176 GATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSV----EGYWQITLDSITMDGETIACS  251 (370)
T ss_dssp             GCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSE----ETTEEEEECEEESSSSEEECT
T ss_pred             CCCchhhhhhhhcccccceeEEEeecCCCCCceEecCCcCchhcccceeEEeecc----cceEEEEEeeEEeCCeEEecC
Confidence                445554442   799999999877778999999998    47999999987    789999999999999887654


Q ss_pred             cccCCCCCEEEecCCcceecChhHHHHHHHHHHHHHhcCCCCCCccccccceeccCCccccCCeEEEEEcCCcEEEeCCC
Q 017894          231 TTVFSTPGTIIDSGTVITRLPPHAYTVLKTAFRQLMSKYPTAPAVSILDTCYDFSEHETITIPKISFFFNGGVEVDVDVT  310 (364)
Q Consensus       231 ~~~~~~~~aiiDtgt~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~P~i~~~~~g~~~~~i~~~  310 (364)
                      ..    ..++|||||++++||.+++++|++++.+...    ..      .++.++|.....+|+|+|+| +|++++|+|+
T Consensus       252 ~~----~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~----~~------~~~~~~C~~~~~~P~l~f~f-~g~~~~l~~~  316 (370)
T d3psga_         252 GG----CQAIVDTGTSLLTGPTSAIANIQSDIGASEN----SD------GEMVISCSSIDSLPDIVFTI-DGVQYPLSPS  316 (370)
T ss_dssp             TC----EEEEECTTCCSEEEEHHHHHHHHHHTTCEEC----TT------CCEECCGGGGGGCCCEEEEE-TTEEEEECHH
T ss_pred             CC----ccEEEecCCceEeCCHHHHHHHHHHhCCeee----cC------CcEEEeccccCCCceEEEEE-CCEEEEEChH
Confidence            33    3599999999999999999999999876521    11      13666777777899999999 8999999999


Q ss_pred             ceEEEcCCCeEEE-EEEcC---CCCCCeeEecccceeeeEEEEECCCCEEEEEeCC
Q 017894          311 GIMFPIRASQVCL-AFAGN---SDPSDVGIFGNVQQHTLEVVYDVAHGQVGFAAGG  362 (364)
Q Consensus       311 ~~~~~~~~~~~C~-~~~~~---~~~~~~~ilG~~fl~~~y~vfD~~~~rigfa~~~  362 (364)
                      +|+++..  ..|+ .+...   ....+.||||.+|||++|++||++++||||||++
T Consensus       317 ~yi~~~~--~~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~a  370 (370)
T d3psga_         317 AYILQDD--DSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA  370 (370)
T ss_dssp             HHEEECS--SCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             HeEEEcC--CeEEEEEEEcccCCCCCCcEEECHHhhcCEEEEEECCCCEEEEEecC
Confidence            9999853  4475 34332   2345679999999999999999999999999985
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]} Back     information, alignment and structure
>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]} Back     information, alignment and structure