Citrus Sinensis ID: 017913

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
Protein Sequence
MHKVDPAHQLVVVSKFISLQSLMSNMEGEETPHRQIPDETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKKFSFKNKPVKKETHIINQDTECNTVSLPELKKTSLPVRDSPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWLRAVQSPNWSVLPEEERIGTVDLVDLECGNGTI
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccccccccccccccccccccccccccccccccEEcccccEEEcccccccccEEEEEcccccEEEEEccccEEEEccccccEEEEccccccEEEEEccccEEEEEEEEEEEEEEccEEEEEEcccccEEEcccccEEEccccccccHHHHHHHcccccccccccEEEccccccccccccEEEcccccccccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEEEEHccHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccEEEEEcccccEEEEEccccEEEEEcccccEEEEEccccEEEEEcccccEEEEEEEEEEEEccccEEEEEEEccccEEEccccEEEEccccccccHHHHHHHcccccccccccccccccccccccccccEEccHHHcccEEEEEEEccccccc
Coil and Loop (DISEMBL)
mhkvdpahQLVVVSKFISLQSLmsnmegeetphrqipdetLQKKHQSMIHRLAVRHQtrletrkpdspdssstsAFLSRFNDFKNSITtqiesaadpscltdissSISDLEKLVaensyclpsyeIRASLKTISDLRQNLDTLtahivpkkkfsfknkpvkkethiinqdtecntvslpelkktslpvrdspgfrdkqSQVLVKNfkgseigeftlsgldscevKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFakrsdfylrarsrpiiedsnevrfapyclkYKGIEADLEVAglneetgnwtnvddfkwlravqspnwsvlpeeerigtvdlvdlecgngti
Flexible Loop (DISEMBL)
mhkvdpahqlVVVSKFISLQSLMSNMEGEETPHRQIPDETLQKKHQSMIHRLAVrhqtrletrkpdspdssstsaFLSRFNDFKNSITTqiesaadpscLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLtahivpkkkfsfknkpvkkethiinqdtecntvslpelkktslpvrdspgfrdkqsqvLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHfakrsdfylrarsrpiiedsnevrfaPYCLKYKGIEADLEVAGLNeetgnwtnvddfKWLRAVQSpnwsvlpeeerigtvdlvdlecgngti
Low Complexity Region (SEG)
MHKVDPAHQLVVVSKFISLQSLMSNMEGEETPHRQIPDETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIvpkkkfsfknkpvkkETHIINQDTECNTVSLPELKKTSLPVRDSPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWLRAVQSPNWSVLPEEERIGTVDLVDLECGNGTI
Disordered region (IsUnstruct)
*********LVVVSKFISL*******************************************************************************CLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKKFSFKN******THIINQ*******************************VLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWLRAVQSPNWSVLPEEERIGTVDLVDLEC*****
Disordered Region (DISOPRED)
******AHQLVVVSKFI*************************************************************RFNDFK******************ISSSISDLEKLVAENSYCLPSYEIRASLKTISDL*******************************************************PGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWLRAVQSPNWSVLPEEERIGTVDLVDLECG****
Disordered Region (DISEMBL)
MHKVDPAHQLVVVSKFISLQSLMSN*********QIPDETLQKKHQSMIHRLAVRHQTR***************AFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKKFSFKNKPVKKETHIINQDTECNTVSLPELKKTSLPVRDSPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWLRAVQSPNWSVLPEEERIGTVDLVDLECGNGTI
Disordered Region (DISPRO)
**KVDPAHQLVVVSKFISLQSLMSNMEGE*T*HRQIPDETLQKKHQSMIHRLAVRHQTRLETRK****DSSSTSAFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKKFSFK***********************************PGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWLRAVQSPNWSVLPEEERIGTVDLVDLECG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHKVDPAHQLVVVSKFISLQSLMSNMEGEETPHRQIPDETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKKFSFKNKPVKKETHIINQDTECNTVSLPELKKTSLPVRDSPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWLRAVQSPNWSVLPEEERIGTVDLVDLECGNGTI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	364	2.2.26 [Sep-21-2011]
Q9SMR2	345	Tubulin-folding cofactor	yes	no	0.835	0.881	0.589	3e-96
Q3SZE9	345	Tubulin-specific chaperon	yes	no	0.892	0.942	0.307	5e-41
Q8VCN9	341	Tubulin-specific chaperon	yes	no	0.678	0.724	0.339	3e-37
Q15814	346	Tubulin-specific chaperon	yes	no	0.815	0.858	0.301	3e-37
Q5R5J7	346	Tubulin-specific chaperon	yes	no	0.818	0.861	0.299	6e-37
Q54PY1	420	Tubulin-specific chaperon	yes	no	0.346	0.3	0.331	2e-15
Q8AVX5	353	Protein XRP2 OS=Xenopus l	N/A	no	0.370	0.382	0.270	9e-15
O75695	350	Protein XRP2 OS=Homo sapi	no	no	0.362	0.377	0.261	3e-13
Q9EPK2	347	Protein XRP2 OS=Mus muscu	no	no	0.359	0.377	0.270	4e-13
Q5ZHN4	357	Protein XRP2 OS=Gallus ga	no	no	0.359	0.366	0.248	8e-13

>sp|Q9SMR2|TBCC_ARATH Tubulin-folding cofactor C OS=Arabidopsis thaliana GN=POR PE=1 SV=1

 Score =  352 bits (903), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 195/331 (58%), Positives = 242/331 (73%), Gaps = 27/331 (8%)

Query: 38  DETLQKKHQSMIHRLAVRHQTR----LETRKPDSPDSSSTSAFLSRFNDFKNSITTQI-- 91
           D  LQKKH  M+ RL+ RHQ R     ++    S    STS+FL++F+D K SI ++I  
Sbjct: 14  DPALQKKHHDMLERLSARHQARKSDSPDSSSSSSSTLESTSSFLAKFSDSKRSIESRIAE 73

Query: 92  --------ESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTL 143
                   +S+   S L +IS +I +LEKL+AENSY LPSYE+R+SLK +SDL+Q+LD L
Sbjct: 74  SRLASSSTDSSKLKSDLAEISVAIDNLEKLLAENSYFLPSYEVRSSLKIVSDLKQSLDIL 133

Query: 144 TAHIVPKKKFSFKNK-----PVKKETHIINQDTECNTVSLPELKKTSLPVRDSPGFRDKQ 198
           +  +VPKKKFSFK+K     P  K   I   D     V  P+L    +PVRDSPG R+K 
Sbjct: 134 SGELVPKKKFSFKSKSTTKKPESKLPEIQKPDV----VLPPKL----VPVRDSPGLRNKH 185

Query: 199 SQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVE 258
            + LVK+F+GS IGEFTLS LDSC+VKL G+VNALF+++LK C VY GPV+GSILI++VE
Sbjct: 186 GETLVKSFEGSSIGEFTLSDLDSCQVKLTGTVNALFLHRLKKCSVYTGPVIGSILIDDVE 245

Query: 259 NCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNE 318
           +C+LVL SHQIRIH A++SDFYLR RSRPIIEDSN VRFAPYCL YKGI+ DL+ AGL E
Sbjct: 246 DCVLVLASHQIRIHCARKSDFYLRVRSRPIIEDSNGVRFAPYCLDYKGIDEDLKTAGLEE 305

Query: 319 ETGNWTNVDDFKWLRAVQSPNWSVLPEEERI 349
           ET NW NVDDF+WLRAVQSPNWS+LPEEER+
Sbjct: 306 ETNNWANVDDFRWLRAVQSPNWSLLPEEERV 336

Essential tubulin-folding protein involved in the final step of the tubulin folding pathway. Required for continuous microtubule cytoskeleton organization, mitotic division, cytokinesis, and to couple cell cycle progression to cell division in embryos and endosperms.
Arabidopsis thaliana (taxid: 3702)

>sp|Q3SZE9|TBCC_BOVIN Tubulin-specific chaperone C OS=Bos taurus GN=TBCC PE=2 SV=1

 Score =  168 bits (426), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 175/342 (51%), Gaps = 17/342 (4%)

Query: 17  ISLQSLMSNMEGEETPHRQIPDETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAF 76
           +S  +L +   G +     +P E LQK+     H   +  + R + R+    +   +  F
Sbjct: 6   LSAAALANGDLGSQRERTLVP-ERLQKRE----HERQLEVERRKQKRQDQEVEEEKSDFF 60

Query: 77  LSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDL 136
            + F   ++++   +ES      L + ++ +  L+KL+ ++   L +Y++R + + ++ L
Sbjct: 61  AAAFARERSAVEELLESGESVERLEEAAARLQGLQKLINDSVLFLAAYDLRQAQEVLARL 120

Query: 137 RQNLDTLTAHIVPKKKFSFKNKPVKKETHIINQDTECNTVSLPELKKTSLPVR------D 190
           +  L      + PKK+F+FK +  KK+     Q          E   TS P        D
Sbjct: 121 QAALAKRRQELQPKKRFAFKTR--KKDAASATQVASAPDAPAAEGSLTSPPPLKEEGDFD 178

Query: 191 SP---GFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGP 247
           S    GF + QSQVL K  +     +  L+ L +C +KL G+ N L + + + C +  GP
Sbjct: 179 SSWICGFSNLQSQVLEKRAEELHQQDVLLTQLRNCTIKLYGNPNTLRLTKAQGCTLLCGP 238

Query: 248 VMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGI 307
           V  S+ +E+  +C+L +   Q+R+H  K +  +L+  SR I+ED   ++FAPY   Y GI
Sbjct: 239 VSTSVFLEDCSDCVLAVACQQLRVHTTKDTRIFLQVTSRAIMEDCTGIQFAPYTWSYPGI 298

Query: 308 EADLEVAGLNEETGNWTNVDDFKWL-RAVQSPNWSVLPEEER 348
           + D E +GL++   NW +VDDF WL R V SPNW+VLPEEER
Sbjct: 299 DKDFEGSGLDKNKNNWNDVDDFNWLARDVASPNWNVLPEEER 340

Tubulin-folding protein; involved in the final step of the tubulin folding pathway.

Bos taurus (taxid: 9913)

>sp|Q8VCN9|TBCC_MOUSE Tubulin-specific chaperone C OS=Mus musculus GN=Tbcc PE=2 SV=1

 Score =  155 bits (393), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 136/256 (53%), Gaps = 9/256 (3%)

Query: 100 LTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKKFSFKNKP 159
           L + ++ +  L KL+ ++   L +Y++R     ++ L+  L      + PKK+F+FK + 
Sbjct: 83  LEEAANRLQGLRKLLNDSVLFLAAYDLRQGQAALAQLQAVLTERRQELQPKKRFAFKAR- 141

Query: 160 VKKETHIINQDTECNTVSLPELKKTSLPVRDSPG------FRDKQSQVLVKNFKGSEIGE 213
            KK+     Q       S       +     +PG      F + +SQ L K  +     +
Sbjct: 142 -KKDAAGTAQVDAAPVTSAAPSPPVTKEEEGAPGASWACGFSNLESQDLEKRAEELHQRD 200

Query: 214 FTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHF 273
             LS L +C VKL G+ N L + + + CKV  GPV  S+ +E+  +C+L +   Q+R+H 
Sbjct: 201 VLLSDLTNCTVKLCGNPNTLRLAKARGCKVLCGPVTTSVFLEDCRDCVLAVACQQLRVHT 260

Query: 274 AKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL- 332
            K +  +L+  SR I+ED + ++FAPY   Y GI+ D + +GL+    NW  VDDF WL 
Sbjct: 261 TKDTRVFLQVTSRAIVEDCSGIQFAPYTWSYPGIDKDFQDSGLDRSKNNWDQVDDFNWLA 320

Query: 333 RAVQSPNWSVLPEEER 348
           R V SPNWS+LPEEER
Sbjct: 321 RNVASPNWSILPEEER 336

Tubulin-folding protein; involved in the final step of the tubulin folding pathway.

Mus musculus (taxid: 10090)

>sp|Q15814|TBCC_HUMAN Tubulin-specific chaperone C OS=Homo sapiens GN=TBCC PE=1 SV=2

 Score =  155 bits (393), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 170/328 (51%), Gaps = 31/328 (9%)

Query: 39  ETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIESAADPS 98
           E LQ++ Q    +L V  + R + R+    +  ++  F++ F   + ++   +E A    
Sbjct: 27  ERLQRREQE--RQLEV--ERRKQKRQNQEVEKENSHFFVATFVRERAAVEELLERAESVE 82

Query: 99  CLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKKFSFKNK 158
            L + +S +  L+KL+ ++ + L +Y++R   + ++ L+  L      + PKK+F+FK +
Sbjct: 83  RLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKRFAFKTR 142

Query: 159 PVKKETHIINQDTECNTV--SLPELKKTSLPVRDSP---------------GFRDKQSQV 201
                     +D   +T   + P +      ++DSP               GF + +SQV
Sbjct: 143 ---------GKDAASSTKVDAAPGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQV 193

Query: 202 LVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCL 261
           L K        +  L+ L +C V+L G+ N L + +  +CK+  GPV  S+ +E+  +C+
Sbjct: 194 LEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCV 253

Query: 262 LVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETG 321
           L +   Q+RIH  K +  +L+  SR I+ED + ++FAPY   Y  I+ D E +GL+    
Sbjct: 254 LAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKN 313

Query: 322 NWTNVDDFKWL-RAVQSPNWSVLPEEER 348
           NW +VDDF WL R + SPNWS+LPEEER
Sbjct: 314 NWNDVDDFNWLARDMASPNWSILPEEER 341

Tubulin-folding protein; involved in the final step of the tubulin folding pathway.

Homo sapiens (taxid: 9606)

>sp|Q5R5J7|TBCC_PONAB Tubulin-specific chaperone C OS=Pongo abelii GN=TBCC PE=2 SV=1

 Score =  155 bits (391), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 167/327 (51%), Gaps = 29/327 (8%)

Query: 39  ETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIESAADPS 98
           E LQ++ Q    +L V  + R + R+    +  ++  F + F   + ++   +E A    
Sbjct: 27  ERLQRREQE--RQLEV--ERRKQKRQNQEVEKENSHFFAATFARERAAVEELLERAESVE 82

Query: 99  CLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKKFSFKNK 158
            L + +S +  L+KL+ ++ + L +Y++R   + ++ L+  L      + PKK+F+FK +
Sbjct: 83  RLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRELQPKKRFAFKTR 142

Query: 159 PVKKETHIINQDTECNTV-SLPELKKTSLPVRDSP---------------GFRDKQSQVL 202
                +        C  V + P +      ++DSP               GF + +SQVL
Sbjct: 143 GKDAAS--------CTKVDAAPGIPPAVESIQDSPLPKKAEGDLGSSWLCGFSNLESQVL 194

Query: 203 VKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLL 262
            K        +  L+ L +C V+L G+ N L + +  +CK+  GPV  S+ +E+  +C+L
Sbjct: 195 EKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVL 254

Query: 263 VLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGN 322
            +   Q+RIH  K +  +L+  SR I+ED + ++FAPY   Y  I+ D E +GL+    N
Sbjct: 255 AVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKNN 314

Query: 323 WTNVDDFKWL-RAVQSPNWSVLPEEER 348
           W +VDDF WL R + SPNW +LPEEER
Sbjct: 315 WNDVDDFNWLARDMASPNWCILPEEER 341

Tubulin-folding protein; involved in the final step of the tubulin folding pathway.

Pongo abelii (taxid: 9601)

>sp|Q54PY1|TBCC_DICDI Tubulin-specific chaperone C OS=Dictyostelium discoideum GN=tbcc PE=3 SV=1

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 75/154 (48%), Gaps = 28/154 (18%)

Query: 216 LSGLDSCEVKL-VGSVNALFINQLKNCKVYVG-PVMGSILIEEVENCLLVLVSHQIRIHF 273
           +S L  C V L +  + AL IN L NCK+    P+ GSI I+   N +  LVS QIRIH+
Sbjct: 267 ISDLTDCTVILDMKVLTALKINNLVNCKIRANSPIDGSIFIDNCINSIFSLVSRQIRIHY 326

Query: 274 AKRSDFYLRARSRPIIEDSNEVRFAPYCL------------------------KYKGIEA 309
                F +  +S PIIE S +++F+ Y                          ++K    
Sbjct: 327 CTDCQFNIFVKSNPIIEGSKQIKFSSYLQNLKQQQQQQQQQEQEKVLSSFDNKRFKEYSF 386

Query: 310 DLEVAGLNEETGNWTNVDDFKWLRAVQSPNWSVL 343
           DLE   +  ++  W  V+DF W++  QSPNWS++
Sbjct: 387 DLESNNI--DSDKWKLVNDFDWIQQKQSPNWSLV 418

Tubulin-folding protein; involved in the final step of the tubulin folding pathway.

Dictyostelium discoideum (taxid: 44689)

>sp|Q8AVX5|XRP2_XENLA Protein XRP2 OS=Xenopus laevis GN=rp2 PE=2 SV=3

 Score = 81.6 bits (200), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 2/137 (1%)

Query: 213 EFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIH 272
           +F +   ++C + +      + I+   NC++++GPV GS+   + ++C  V+   Q R  
Sbjct: 64  QFVIQECENCNIYIFDHSATITIDDCTNCRIFLGPVKGSVFFRDCKDCKCVVACQQFRTR 123

Query: 273 FAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL 332
             +R D +L   ++PIIE S  ++F  +   Y  +    + AGL+     W+N+ DF  +
Sbjct: 124 DCRRMDVFLCCSTQPIIESSTSMKFGCFQYYYPELALQFKEAGLSILNNTWSNIHDFTPV 183

Query: 333 RAVQSPNWSVLPEEERI 349
                 NWS+LP +  I
Sbjct: 184 AG--ETNWSLLPPDAVI 198

Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization. Acts as a GTPase-activating protein. May act as guanine nucleotide dissociation inhibitor towards ADP-ribosylation factor-like proteins.

Xenopus laevis (taxid: 8355)

>sp|O75695|XRP2_HUMAN Protein XRP2 OS=Homo sapiens GN=RP2 PE=1 SV=4

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 2/134 (1%)

Query: 213 EFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIH 272
           +F +   ++C + +      + I+   NC +++GPV GS+      +C   L   Q R+ 
Sbjct: 61  QFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVR 120

Query: 273 FAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL 332
             ++ + +L   ++PIIE S+ ++F  +   Y  +    + AGL+     W+N+ DF  +
Sbjct: 121 DCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPV 180

Query: 333 RAVQSPNWSVLPEE 346
                 NWS+LPE+
Sbjct: 181 SG--ELNWSLLPED 192

Acts as a GTPase-activating protein (GAP) involved in trafficking between the Golgi and the ciliary membrane. Involved in localization of proteins, such as NPHP3, to the cilium membrane by inducing hydrolysis of GTP ARL3, leading to the release of UNC119 (or UNC119B). Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization. Acts as guanine nucleotide dissociation inhibitor towards ADP-ribosylation factor-like proteins.

Homo sapiens (taxid: 9606)

>sp|Q9EPK2|XRP2_MOUSE Protein XRP2 OS=Mus musculus GN=Rp2 PE=1 SV=3

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 213 EFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIH 272
           +F +   ++C + +      + I+   NC +++GPV GS+      +C   L   Q R+ 
Sbjct: 58  QFVIQDCENCNIYIFDHSATITIDDCTNCVIFLGPVKGSVFFRNCRDCKCTLACQQFRVR 117

Query: 273 FAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL 332
             ++ + +L   ++PIIE S  ++F  +   Y  + A  + AGL+     W++V DF  +
Sbjct: 118 DCRKLEVFLCCATQPIIESSTNIKFGCFQWYYPELAAQFKDAGLSIFNNIWSHVHDFTPV 177

Query: 333 RAVQSPNWSVLPE 345
                 NWS+LPE
Sbjct: 178 SG--ELNWSLLPE 188

Acts as a GTPase-activating protein (GAP) involved in trafficking between the Golgi and the ciliary membrane. Involved in localization of proteins, such as NPHP3, to the cilium membrane by inducing hydrolysis of GTP ARL3, leading to the release of UNC119 (or UNC119B). Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization. Acts as guanine nucleotide dissociation inhibitor towards ADP-ribosylation factor-like proteins.

Mus musculus (taxid: 10090)

>sp|Q5ZHN4|XRP2_CHICK Protein XRP2 OS=Gallus gallus GN=RP2 PE=2 SV=3

 Score = 75.1 bits (183), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 213 EFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIH 272
           +F +   ++C + +      + I+   NC++++GP+ GS+     ++C  ++   Q R  
Sbjct: 68  QFVIQDCENCSIYIFDHSATVTIDDCVNCQIFLGPIKGSVFFRNCKDCKCIVACQQFRTR 127

Query: 273 FAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL 332
             +R + +L   ++PIIE S  ++F  +   Y  +    + AGL+     W+N+ DF  +
Sbjct: 128 DCRRLEVFLCCATQPIIESSTGMKFGCFQYYYPELALQFKDAGLSIFNNTWSNIHDFTPV 187

Query: 333 RAVQSPNWSVLPE 345
                 NW +LPE
Sbjct: 188 SG--ENNWGLLPE 198

Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization. Acts as a GTPase-activating protein. May act as guanine nucleotide dissociation inhibitor towards ADP-ribosylation factor-like proteins.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
225467664	351	PREDICTED: tubulin-specific chaperone C-	0.909	0.943	0.596	1e-109
359494734	351	PREDICTED: tubulin-specific chaperone C-	0.884	0.917	0.598	1e-108
356525467	336	PREDICTED: tubulin-specific chaperone C-	0.857	0.928	0.592	1e-104
449458285	356	PREDICTED: tubulin-folding cofactor C-li	0.870	0.890	0.596	1e-104
255646443	337	unknown [Glycine max]	0.857	0.925	0.585	1e-102
356512697	329	PREDICTED: tubulin-specific chaperone C-	0.870	0.963	0.578	1e-102
255584193	351	tubulin folding cofactor C, putative [Ri	0.870	0.903	0.593	1e-100
297798020	350	hypothetical protein ARALYDRAFT_912482 [	0.837	0.871	0.584	9e-96
20514261	340	tubulin folding cofactor C [Arabidopsis	0.835	0.894	0.595	5e-95
15236084	345	C-CAP/cofactor C-like domain-containing	0.835	0.881	0.589	2e-94

>gi|225467664|ref|XP_002269385.1| PREDICTED: tubulin-specific chaperone C-like [Vitis vinifera]

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/347 (59%), Positives = 257/347 (74%), Gaps = 16/347 (4%)

Query: 26  MEGEETPHR--QIPDETLQKKHQSMIHRLAVRHQTRLE---TRKPDS---PDSSSTSAFL 77
           ME  + P    Q  D   QKKH SM+ RL+   QTRL+    RK DS   P   ST +FL
Sbjct: 1   MEQHQDPKNPNQALDSATQKKHASMLARLSNLQQTRLQQSLARKSDSVSGPSFESTQSFL 60

Query: 78  SRFNDFKNSITTQIESA---ADP---SCLTDISSSISDLEKLVAENSYCLPSYEIRASLK 131
           +RF+D K SI +Q+  A   +DP   S L  IS+SI+DLEKLVAENSY LPSYEIR++LK
Sbjct: 61  TRFSDSKRSIESQLAGARLTSDPQRRSDLQQISTSIADLEKLVAENSYYLPSYEIRSALK 120

Query: 132 TISDLRQNLDTLTAHIVPKKKFSFKNKPVKKETHIINQDTECNTVSLPELKKTSLPVRDS 191
           ++S+L+Q LD L + ++PKKKFSF+NK  KKE     ++ E     L      S+P  D+
Sbjct: 121 SVSELKQTLDNLNSELLPKKKFSFRNKGTKKEPSNAPEEKEFGNADLQPKLVFSIP--DT 178

Query: 192 PGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGS 251
           PGFR+K+ ++LVK+F+GS+IGEFT+S LDSCEV+L G V  +FI++LKNC+V+ GPV GS
Sbjct: 179 PGFRNKEGELLVKDFRGSDIGEFTISDLDSCEVRLSGCVRTIFIHRLKNCRVFAGPVSGS 238

Query: 252 ILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADL 311
           ILIEEVE C+ VL SHQIRIH+AK SDFYLR RSRPIIEDSN VRFAPYCL Y+GIE DL
Sbjct: 239 ILIEEVEGCVFVLASHQIRIHYAKGSDFYLRVRSRPIIEDSNGVRFAPYCLCYQGIEEDL 298

Query: 312 EVAGLNEETGNWTNVDDFKWLRAVQSPNWSVLPEEERIGTVDLVDLE 358
           + +GL+EETGNW NVDDF+WLRAVQSPNWS LPE ERIGTV++ +LE
Sbjct: 299 KDSGLDEETGNWANVDDFRWLRAVQSPNWSALPENERIGTVNISNLE 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494734|ref|XP_003634829.1| PREDICTED: tubulin-specific chaperone C-like [Vitis vinifera]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/336 (59%), Positives = 252/336 (75%), Gaps = 14/336 (4%)

Query: 35  QIPDETLQKKHQSMIHRLAVRHQTRLE---TRKPDS---PDSSSTSAFLSRFNDFKNSIT 88
           ++ D   QKKH SM+ RL+   QTRL+    RK DS   P   ST +FL+RF+D   SI 
Sbjct: 12  RVLDSATQKKHASMLERLSNLQQTRLQQSLARKSDSVSGPSFESTQSFLTRFSDSNRSIE 71

Query: 89  TQIESA---ADP---SCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDT 142
           +Q+  A    DP   S L  IS+SI+DLEKLVAENSY LPSYEIR++LK++S+L+Q LD 
Sbjct: 72  SQLAGARLTCDPQRRSDLQQISTSIADLEKLVAENSYYLPSYEIRSALKSVSELKQTLDN 131

Query: 143 LTAHIVPKKKFSFKNKPVKKETHIINQDTECNTVSLPELKKTSLPVRDSPGFRDKQSQVL 202
           L + ++PKKKFSF+NK  K+E     ++ E     L      S+P  D+PGFR+K+ ++L
Sbjct: 132 LNSELLPKKKFSFRNKGTKREPSNAPEEKEFGNADLQPKLVFSIP--DTPGFRNKEGELL 189

Query: 203 VKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLL 262
           VK+F+GS+IGEFT+S LDSCEV+L G V  +FI++LKNC+V+ GPV GSILIEEVE C+ 
Sbjct: 190 VKDFRGSDIGEFTISDLDSCEVRLSGCVRTIFIHRLKNCRVFAGPVSGSILIEEVEGCVF 249

Query: 263 VLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGN 322
           VL SHQIRIH+AK SDFYLR RSRPIIEDSN VRFAPYCL Y+GIE DL+ +GL+EETGN
Sbjct: 250 VLASHQIRIHYAKGSDFYLRVRSRPIIEDSNGVRFAPYCLCYQGIEEDLKDSGLDEETGN 309

Query: 323 WTNVDDFKWLRAVQSPNWSVLPEEERIGTVDLVDLE 358
           W NVDDF+WLRAVQSPNWS LPE ERIGTV++ +LE
Sbjct: 310 WANVDDFRWLRAVQSPNWSALPENERIGTVNISNLE 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525467|ref|XP_003531346.1| PREDICTED: tubulin-specific chaperone C-like [Glycine max]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/326 (59%), Positives = 249/326 (76%), Gaps = 14/326 (4%)

Query: 42  QKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLS-RFNDFKNSITTQIESA----AD 96
           QKKH +M+ RL+ R Q+R  ++ PDS  S S+++ +  RF   K+SI +Q+  +    +D
Sbjct: 10  QKKHLAMLERLSKRTQSR--SQNPDSSSSESSTSSILSRFTHLKSSIESQLAQSQSISSD 67

Query: 97  PSCL----TDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKK 152
           PS L      IS SISDLEK VAENSY LPSY++R SLKT+SDL+ +LD LT+ ++PKKK
Sbjct: 68  PSNLKLHFNQISESISDLEKFVAENSYSLPSYDVRTSLKTVSDLKHSLDDLTSQLLPKKK 127

Query: 153 FSFKNKPVKKETHIINQDTECNTVSLPELKKTSLPVRDSPGFRDKQSQVLVKNFKGSEIG 212
           FSFKNKP  K+ +   +D+     + P    T L  RDSPGFR+K +++L+ +F+GSE+G
Sbjct: 128 FSFKNKPTTKKEY---KDSAIPLPTQPPQLSTRLAPRDSPGFRNKTAELLISDFRGSEVG 184

Query: 213 EFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIH 272
           EFT+S LDSC+V+++GSV ALF+++LKN +VYVGPV GS+LIEE E C+ VL SHQIRIH
Sbjct: 185 EFTVSDLDSCQVRIIGSVRALFVHRLKNSRVYVGPVTGSVLIEEAEGCVFVLASHQIRIH 244

Query: 273 FAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL 332
            AKRSDFYLR RSRPIIED N VRFAPYCL Y+GIE DL  AGL+ ETGNW+NVDDF+WL
Sbjct: 245 GAKRSDFYLRVRSRPIIEDCNGVRFAPYCLNYEGIEEDLRGAGLDAETGNWSNVDDFRWL 304

Query: 333 RAVQSPNWSVLPEEERIGTVDLVDLE 358
           RAVQSPNWSVLPE ER+GTV++ +L+
Sbjct: 305 RAVQSPNWSVLPENERVGTVEISNLK 330

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458285|ref|XP_004146878.1| PREDICTED: tubulin-folding cofactor C-like [Cucumis sativus] gi|449513139|ref|XP_004164243.1| PREDICTED: tubulin-folding cofactor C-like [Cucumis sativus]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/332 (59%), Positives = 247/332 (74%), Gaps = 15/332 (4%)

Query: 38  DETLQKKHQSMIHRLAVRHQTRLET----RKPDSPDSSSTSAFLSRFNDFKNSITTQIE- 92
           D  LQKKH S+I RLA R+QTRLE     R      +SSTS+FL RF+D K +I + +  
Sbjct: 20  DANLQKKHASVIERLANRNQTRLENSITRRSESDSSTSSTSSFLDRFSDSKRAIESALAQ 79

Query: 93  ---SAADP----SCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTA 145
              +  DP    S L  IS+SISDLEKLVAE+SY LPSYE+RASLK+IS+L+Q LD L +
Sbjct: 80  CRLTPPDPAQLRSHLDGISTSISDLEKLVAESSYSLPSYEVRASLKSISELKQALDNLNS 139

Query: 146 HIVPKKKFSFKNKPVKKETHIINQD---TECNTVSLPELKKTSLPVRDSPGFRDKQSQVL 202
            ++PKKKFSFKNK  KK+    ++D      +++ + + ++ S   RDSPG RDK  ++L
Sbjct: 140 ELLPKKKFSFKNKATKKDQKSESKDPGLENADSMLMNKQQQASYSARDSPGIRDKDGEIL 199

Query: 203 VKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLL 262
           VKNFKGS++GEFT+SGL SCEVKL+GSV ALFI++L+NCKVY GPVMGSILI++VE C  
Sbjct: 200 VKNFKGSDVGEFTISGLSSCEVKLIGSVRALFIHKLRNCKVYTGPVMGSILIDDVEECTF 259

Query: 263 VLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGN 322
            + SHQIRIH AK+SDFYLR RSRPIIEDS+ VRFAPY + Y+GIE DL  A L  ETGN
Sbjct: 260 AMASHQIRIHNAKKSDFYLRVRSRPIIEDSSSVRFAPYRVSYEGIEEDLTDATLGVETGN 319

Query: 323 WTNVDDFKWLRAVQSPNWSVLPEEERIGTVDL 354
           W NVDDF+WLRAV SPNWS+LPE+ERI T+ +
Sbjct: 320 WENVDDFRWLRAVPSPNWSILPEDERIDTIKI 351

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646443|gb|ACU23700.1| unknown [Glycine max]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/326 (58%), Positives = 247/326 (75%), Gaps = 14/326 (4%)

Query: 42  QKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLS-RFNDFKNSITTQIESA----AD 96
           QKKH +M+ RL+ R Q+R  ++ PDS  S S+++ +  RF   K+SI +Q+  +    +D
Sbjct: 11  QKKHLAMLERLSKRTQSR--SQNPDSSSSESSTSSILSRFTHLKSSIESQLAQSQSISSD 68

Query: 97  PSCL----TDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKK 152
           PS L      IS SISDLEK VAENSY LPSY++R SLKT+SDL+ +LD LT+ ++PKKK
Sbjct: 69  PSNLKLHFNQISESISDLEKFVAENSYSLPSYDVRTSLKTVSDLKHSLDDLTSQLLPKKK 128

Query: 153 FSFKNKPVKKETHIINQDTECNTVSLPELKKTSLPVRDSPGFRDKQSQVLVKNFKGSEIG 212
           FSFKNKP  K+ +   +D+     + P    T L  RDSPGFR+K +++L+ +F+G E+G
Sbjct: 129 FSFKNKPTTKKEY---KDSAIPLPTQPPQLSTRLAPRDSPGFRNKTAELLISDFRGPEVG 185

Query: 213 EFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIH 272
           EFT+S LDSC+V+++GSV ALF+++LKN +VYVGPV GS+LIEE E C+ VL SHQIRIH
Sbjct: 186 EFTVSDLDSCQVRIIGSVRALFVHRLKNFRVYVGPVTGSVLIEEAEGCVFVLASHQIRIH 245

Query: 273 FAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL 332
            AKRSDFYLR RSRPIIED N VRFAPYCL Y+GIE DL  AGL+ ETGNW+NVDDF+WL
Sbjct: 246 GAKRSDFYLRVRSRPIIEDCNGVRFAPYCLNYEGIEEDLRGAGLDAETGNWSNVDDFRWL 305

Query: 333 RAVQSPNWSVLPEEERIGTVDLVDLE 358
           RAVQ PNWSVLPE ER+GTV++ +L+
Sbjct: 306 RAVQPPNWSVLPENERVGTVEISNLK 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512697|ref|XP_003525053.1| PREDICTED: tubulin-specific chaperone C-like [Glycine max]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/337 (57%), Positives = 247/337 (73%), Gaps = 20/337 (5%)

Query: 39  ETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIESA---- 94
           E  QKKH +M+ RL+ R Q R  ++ P+S      S+ LSRF+  K SI +Q+  +    
Sbjct: 2   EEKQKKHLAMLERLSKRTQIR--SQNPES------SSILSRFSHLKTSIESQLAQSQSIS 53

Query: 95  ADPSCL----TDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPK 150
           +DPS L      IS SISDLEKLVAENSY LPSY++R SLKT+SDL+ +LD LT+ ++PK
Sbjct: 54  SDPSNLKLHINQISQSISDLEKLVAENSYSLPSYDVRTSLKTVSDLKHSLDDLTSQLLPK 113

Query: 151 KKFSFKNKPVKKETHIINQDTECNTVSLPELK---KTSLPVRDSPGFRDKQSQVLVKNFK 207
           KKFSFKNKP    T   ++D +C  + LP+      T L  RDSPGFR+K  ++L+ +F 
Sbjct: 114 KKFSFKNKPPTTTTKKDDKDKDC-AIPLPKQPPQLSTLLAPRDSPGFRNKTGELLIADFS 172

Query: 208 GSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSH 267
            SE+GEFT+S LDSC+V+++GSV ALF++ LKN +VYVGPV GS+LIEE   C+  L SH
Sbjct: 173 DSEVGEFTVSDLDSCQVRIIGSVRALFVHGLKNSRVYVGPVTGSVLIEEAVGCVFALASH 232

Query: 268 QIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVD 327
           QIRIH AKRSDFYLR RSRPIIED + VRFAPYCL+Y+GIE DL   GL+ ETGNW+NVD
Sbjct: 233 QIRIHGAKRSDFYLRVRSRPIIEDCSGVRFAPYCLRYEGIEEDLRGTGLDAETGNWSNVD 292

Query: 328 DFKWLRAVQSPNWSVLPEEERIGTVDLVDLECGNGTI 364
           DF+WLRAVQSPNWSVLPE ER+GTV++ DL+ G+  I
Sbjct: 293 DFRWLRAVQSPNWSVLPENERVGTVEISDLKNGDEEI 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584193|ref|XP_002532835.1| tubulin folding cofactor C, putative [Ricinus communis] gi|223527402|gb|EEF29542.1| tubulin folding cofactor C, putative [Ricinus communis]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/332 (59%), Positives = 249/332 (75%), Gaps = 15/332 (4%)

Query: 38  DETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIE----- 92
           D  L KKHQ+M+ RL+ RHQ R+  +   +  +++T++FLS+F D K SI +Q+      
Sbjct: 22  DSALNKKHQAMLDRLSNRHQNRI-NKSTTATATAATASFLSKFTDAKQSIESQLSHSSTL 80

Query: 93  SAADP----SCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIV 148
           +A DP    S L +IS+SIS LE+L+AENSY LPSYE+R+SLKT+SDL+Q+LD L + +V
Sbjct: 81  AATDPTLLKSHLVNISASISSLEQLIAENSYLLPSYELRSSLKTVSDLKQSLDNLNSDLV 140

Query: 149 PKKKFSFKNKPVKKETHIINQDTECNTVSLPELKKTSLPVRDSPGFRDKQSQVLVKNFKG 208
           PKKKFSFKNK    +     +DTE     L + + T+  +RDSPG R+K++ +L KNFK 
Sbjct: 141 PKKKFSFKNKSTSSKP----KDTETAKTELAK-QATTFIIRDSPGIRNKENDILTKNFKC 195

Query: 209 SEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQ 268
           S+IGEFTL  LDSCEV+L+G VNALFIN+LK+C+VY GPV GSILI++VENCL VL SHQ
Sbjct: 196 SQIGEFTLENLDSCEVRLIGCVNALFINRLKDCRVYAGPVTGSILIDQVENCLFVLASHQ 255

Query: 269 IRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDD 328
           IRIH AK SDFYLR RSRPIIED   VRF PYCL+Y+GIE DL++AGL EE+ NW+NVDD
Sbjct: 256 IRIHNAKVSDFYLRVRSRPIIEDCGGVRFGPYCLRYEGIEDDLKMAGLKEESENWSNVDD 315

Query: 329 FKWLRAVQSPNWSVLPEEERIGTVDLVDLECG 360
           FKWLRAVQSPNW VL E ER G V++ DL  G
Sbjct: 316 FKWLRAVQSPNWRVLEESERAGVVEVNDLGIG 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798020|ref|XP_002866894.1| hypothetical protein ARALYDRAFT_912482 [Arabidopsis lyrata subsp. lyrata] gi|297312730|gb|EFH43153.1| hypothetical protein ARALYDRAFT_912482 [Arabidopsis lyrata subsp. lyrata]

 Score =  356 bits (914), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 197/337 (58%), Positives = 243/337 (72%), Gaps = 32/337 (9%)

Query: 38  DETLQKKHQSMIHRLAVRHQTR-----LETRKPDSPDSSSTSAFLSRFNDFKNSITTQI- 91
           D  LQKKH  M+ RL+ RHQ R       +    S    STS+FL++F+D K SI ++I 
Sbjct: 14  DPALQKKHHDMLERLSARHQARKSDSPDASSSSSSSTLESTSSFLAKFSDSKRSIESRIA 73

Query: 92  ---------ESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDT 142
                    +S+   S L +IS +I++LEKL+AENSY LPSYE+R+SLK +SDL+Q+LD 
Sbjct: 74  ESRLVSSSTDSSKLKSDLAEISVAINNLEKLLAENSYFLPSYEVRSSLKIVSDLKQSLDI 133

Query: 143 LTAHIVPKKKFSFKNKPVKKETHIINQDTECNTVSLPELKKTS-------LPVRDSPGFR 195
           L+  +VPKKKFSFK+K   K+              LPE++K+        LPVRDSPG R
Sbjct: 134 LSGELVPKKKFSFKSKSTTKKPE----------SKLPEIQKSDAVLPPKLLPVRDSPGLR 183

Query: 196 DKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIE 255
           +K    LVK+FKGS IGEFTLS LDSC+VKL G+VNALF+++LK C VY GPV+GSILI+
Sbjct: 184 NKHGVTLVKSFKGSSIGEFTLSDLDSCQVKLTGTVNALFLHRLKKCNVYTGPVIGSILID 243

Query: 256 EVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAG 315
           +VE+C+LVL SHQIRIH A++SDFYLR RSRPIIEDSN VRFAPYCL Y+GIE DL+ AG
Sbjct: 244 DVEDCVLVLASHQIRIHCARKSDFYLRVRSRPIIEDSNGVRFAPYCLDYQGIEEDLKTAG 303

Query: 316 LNEETGNWTNVDDFKWLRAVQSPNWSVLPEEERIGTV 352
           L EET NW NVDDF+WLRAVQSPNWSVLPEEER+  V
Sbjct: 304 LEEETKNWANVDDFRWLRAVQSPNWSVLPEEERVSLV 340

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20514261|gb|AAM22959.1|AF486850_1 tubulin folding cofactor C [Arabidopsis thaliana]

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 194/326 (59%), Positives = 242/326 (74%), Gaps = 22/326 (6%)

Query: 38  DETLQKKHQSMIHRLAVRHQTR----LETRKPDSPDSSSTSAFLSRFNDFKNSITTQI-- 91
           D  LQKKH  M+ RL+ RHQ R     ++    S    STS+FL++F+D K SI ++I  
Sbjct: 14  DPALQKKHHDMLERLSARHQARKSDSPDSSSSSSSTLESTSSFLAKFSDSKRSIESRIAE 73

Query: 92  --------ESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTL 143
                   +S+   S L +IS +I +LEKL+AENSY LPSYE+R+SLK +SDL+Q+LD L
Sbjct: 74  SRLASSSTDSSKLKSDLAEISVAIDNLEKLLAENSYFLPSYEVRSSLKIVSDLKQSLDIL 133

Query: 144 TAHIVPKKKFSFKNKPVKKETHIINQDTECNTVSLPELKKTSLPVRDSPGFRDKQSQVLV 203
           +  +VPKKKFSFK+K   K+  I   D     V  P+L    +PVRDSPG R+K  + LV
Sbjct: 134 SGELVPKKKFSFKSKSTTKKPEIQKPDV----VLPPKL----VPVRDSPGLRNKHGETLV 185

Query: 204 KNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLV 263
           K+F+GS IGEFTLS LDSC+VKL G+VNALF+++LK C VY GPV+GSILI++VE+C+LV
Sbjct: 186 KSFEGSSIGEFTLSDLDSCQVKLTGTVNALFLHRLKKCSVYTGPVIGSILIDDVEDCVLV 245

Query: 264 LVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNW 323
           L SHQIRIH A++SDFYLR RSRPIIEDSN VRFAPYCL YKGI+ DL+ AGL EET NW
Sbjct: 246 LASHQIRIHCARKSDFYLRVRSRPIIEDSNGVRFAPYCLDYKGIDEDLKTAGLEEETNNW 305

Query: 324 TNVDDFKWLRAVQSPNWSVLPEEERI 349
            NVDDF+WLRAVQSPNWS+LPEEER+
Sbjct: 306 ANVDDFRWLRAVQSPNWSLLPEEERV 331

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236084|ref|NP_195702.1| C-CAP/cofactor C-like domain-containing protein [Arabidopsis thaliana] gi|75206810|sp|Q9SMR2.1|TBCC_ARATH RecName: Full=Tubulin-folding cofactor C; Short=TFC C; AltName: Full=Protein PORCINO gi|4490743|emb|CAB38905.1| putative protein [Arabidopsis thaliana] gi|7271047|emb|CAB80655.1| putative protein [Arabidopsis thaliana] gi|89000967|gb|ABD59073.1| At4g39920 [Arabidopsis thaliana] gi|332661738|gb|AEE87138.1| C-CAP/cofactor C-like domain-containing protein [Arabidopsis thaliana]

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 195/331 (58%), Positives = 242/331 (73%), Gaps = 27/331 (8%)

Query: 38  DETLQKKHQSMIHRLAVRHQTR----LETRKPDSPDSSSTSAFLSRFNDFKNSITTQI-- 91
           D  LQKKH  M+ RL+ RHQ R     ++    S    STS+FL++F+D K SI ++I  
Sbjct: 14  DPALQKKHHDMLERLSARHQARKSDSPDSSSSSSSTLESTSSFLAKFSDSKRSIESRIAE 73

Query: 92  --------ESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTL 143
                   +S+   S L +IS +I +LEKL+AENSY LPSYE+R+SLK +SDL+Q+LD L
Sbjct: 74  SRLASSSTDSSKLKSDLAEISVAIDNLEKLLAENSYFLPSYEVRSSLKIVSDLKQSLDIL 133

Query: 144 TAHIVPKKKFSFKNK-----PVKKETHIINQDTECNTVSLPELKKTSLPVRDSPGFRDKQ 198
           +  +VPKKKFSFK+K     P  K   I   D     V  P+L    +PVRDSPG R+K 
Sbjct: 134 SGELVPKKKFSFKSKSTTKKPESKLPEIQKPDV----VLPPKL----VPVRDSPGLRNKH 185

Query: 199 SQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVE 258
            + LVK+F+GS IGEFTLS LDSC+VKL G+VNALF+++LK C VY GPV+GSILI++VE
Sbjct: 186 GETLVKSFEGSSIGEFTLSDLDSCQVKLTGTVNALFLHRLKKCSVYTGPVIGSILIDDVE 245

Query: 259 NCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNE 318
           +C+LVL SHQIRIH A++SDFYLR RSRPIIEDSN VRFAPYCL YKGI+ DL+ AGL E
Sbjct: 246 DCVLVLASHQIRIHCARKSDFYLRVRSRPIIEDSNGVRFAPYCLDYKGIDEDLKTAGLEE 305

Query: 319 ETGNWTNVDDFKWLRAVQSPNWSVLPEEERI 349
           ET NW NVDDF+WLRAVQSPNWS+LPEEER+
Sbjct: 306 ETNNWANVDDFRWLRAVQSPNWSLLPEEERV 336

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
TAIR|locus:2140089	345	POR "PORCINO" [Arabidopsis tha	0.859	0.907	0.560	2.5e-90
UNIPROTKB|E2RDK4	345	TBCC "Uncharacterized protein"	0.428	0.452	0.394	1.3e-36
UNIPROTKB|Q3SZE9	345	TBCC "Tubulin-specific chapero	0.892	0.942	0.286	5.7e-36
UNIPROTKB|F1RUS8	344	TBCC "Uncharacterized protein"	0.903	0.956	0.275	1.3e-34
UNIPROTKB|Q15814	346	TBCC "Tubulin-specific chapero	0.846	0.890	0.298	2.2e-34
MGI|MGI:1919976	341	Tbcc "tubulin-specific chapero	0.846	0.903	0.286	9.5e-34
UNIPROTKB|Q5R5J7	346	TBCC "Tubulin-specific chapero	0.846	0.890	0.295	1.5e-33
RGD|1306756	340	Tbcc "tubulin folding cofactor	0.846	0.905	0.277	5.2e-33
UNIPROTKB|F1P5Q9	304	TBCC "Uncharacterized protein"	0.368	0.440	0.444	1e-32
UNIPROTKB|F1NHK7	188	TBCC "Uncharacterized protein"	0.387	0.75	0.443	3.8e-30

TAIR|locus:2140089 POR "PORCINO" [Arabidopsis thaliana (taxid:3702)]

 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 186/332 (56%), Positives = 235/332 (70%)

Query:    38 DETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSS-----TSAFLSRFNDFKNSITTQI- 91
             D  LQKKH  M+ RL+ RHQ R ++  PDS  SSS     TS+FL++F+D K SI ++I 
Sbjct:    14 DPALQKKHHDMLERLSARHQAR-KSDSPDSSSSSSSTLESTSSFLAKFSDSKRSIESRIA 72

Query:    92 -----ESAADPSCL----TDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDT 142
                   S+ D S L     +IS +I +LEKL+AENSY LPSYE+R+SLK +SDL+Q+LD 
Sbjct:    73 ESRLASSSTDSSKLKSDLAEISVAIDNLEKLLAENSYFLPSYEVRSSLKIVSDLKQSLDI 132

Query:   143 LTAHIXXXXXXXXXXXXXXXETHIINQDTECNTVSLPELKKTSLPVRDSPGFRDKQSQVL 202
             L+  +               +      + +   V LP      +PVRDSPG R+K  + L
Sbjct:   133 LSGELVPKKKFSFKSKSTTKKPESKLPEIQKPDVVLPP---KLVPVRDSPGLRNKHGETL 189

Query:   203 VKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLL 262
             VK+F+GS IGEFTLS LDSC+VKL G+VNALF+++LK C VY GPV+GSILI++VE+C+L
Sbjct:   190 VKSFEGSSIGEFTLSDLDSCQVKLTGTVNALFLHRLKKCSVYTGPVIGSILIDDVEDCVL 249

Query:   263 VLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGN 322
             VL SHQIRIH A++SDFYLR RSRPIIEDSN VRFAPYCL YKGI+ DL+ AGL EET N
Sbjct:   250 VLASHQIRIHCARKSDFYLRVRSRPIIEDSNGVRFAPYCLDYKGIDEDLKTAGLEEETNN 309

Query:   323 WTNVDDFKWLRAVQSPNWSVLPEEERIGTVDL 354
             W NVDDF+WLRAVQSPNWS+LPEEER+  + +
Sbjct:   310 WANVDDFRWLRAVQSPNWSLLPEEERVSLLTI 341

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0000910 "cytokinesis" evidence=IGI

GO:0007021 "tubulin complex assembly" evidence=IGI;ISS

UNIPROTKB|E2RDK4 TBCC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 336 (123.3 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 62/157 (39%), Positives = 95/157 (60%)

Query:   193 GFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSI 252
             GF + +SQVL K  +     +  L+ L  C V+L G+ N L + + + C +  GPV  S+
Sbjct:   184 GFSNVESQVLEKRAEELHQRDVLLTELSKCTVRLYGNPNTLRLAKARGCTLLCGPVSTSV 243

Query:   253 LIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLE 312
              +E+  +C+L +   Q+R+H  + +  +L+  SR I+ED + ++FAPY   Y GI+ D E
Sbjct:   244 FLEDCSDCVLAVACQQLRVHTTRDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPGIDKDFE 303

Query:   313 VAGLNEETGNWTNVDDFKWL-RAVQSPNWSVLPEEER 348
              +GL+    NW ++DDF WL R   SPNWS+LPEEER
Sbjct:   304 GSGLDRSKNNWNDIDDFNWLARDTASPNWSILPEEER 340

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0000902 "cell morphogenesis" evidence=IEA

UNIPROTKB|Q3SZE9 TBCC "Tubulin-specific chaperone C" [Bos taurus (taxid:9913)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 98/342 (28%), Positives = 168/342 (49%)

Query:    17 ISLQSLMSNMEGEETPHRQIPDETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAF 76
             +S  +L +   G +     +P E LQK+     H   +  + R + R+    +   +  F
Sbjct:     6 LSAAALANGDLGSQRERTLVP-ERLQKRE----HERQLEVERRKQKRQDQEVEEEKSDFF 60

Query:    77 LSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDL 136
              + F   ++++   +ES      L + ++ +  L+KL+ ++   L +Y++R + + ++ L
Sbjct:    61 AAAFARERSAVEELLESGESVERLEEAAARLQGLQKLINDSVLFLAAYDLRQAQEVLARL 120

Query:   137 RQNLDTLTAHIX--XXXXXXXXXXXXXXETHIINQD----TECNTVSLPELKKTSLPVRD 190
             +  L      +                  T + +       E +  S P LK+      D
Sbjct:   121 QAALAKRRQELQPKKRFAFKTRKKDAASATQVASAPDAPAAEGSLTSPPPLKEEG--DFD 178

Query:   191 SP---GFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGP 247
             S    GF + QSQVL K  +     +  L+ L +C +KL G+ N L + + + C +  GP
Sbjct:   179 SSWICGFSNLQSQVLEKRAEELHQQDVLLTQLRNCTIKLYGNPNTLRLTKAQGCTLLCGP 238

Query:   248 VMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGI 307
             V  S+ +E+  +C+L +   Q+R+H  K +  +L+  SR I+ED   ++FAPY   Y GI
Sbjct:   239 VSTSVFLEDCSDCVLAVACQQLRVHTTKDTRIFLQVTSRAIMEDCTGIQFAPYTWSYPGI 298

Query:   308 EADLEVAGLNEETGNWTNVDDFKWL-RAVQSPNWSVLPEEER 348
             + D E +GL++   NW +VDDF WL R V SPNW+VLPEEER
Sbjct:   299 DKDFEGSGLDKNKNNWNDVDDFNWLARDVASPNWNVLPEEER 340

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0032391 "photoreceptor connecting cilium" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0000902 "cell morphogenesis" evidence=IEA

UNIPROTKB|F1RUS8 TBCC "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 95/345 (27%), Positives = 168/345 (48%)

Query:    14 SKFISLQSLMSNME-GEETPHRQIPDETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSS 72
             S F +  + + N + G +     +P E LQ++ Q    +L V  + R + R+ +  +   
Sbjct:     1 SSFSAAAAAVRNGDLGSQWDRSLVP-ERLQRREQE--RQLEV--ERRKQKRQNEEVEEEK 55

Query:    73 TSAFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKT 132
             +  F + F   ++++   +E       L + ++ +  L+KL+ ++   L +Y++R   + 
Sbjct:    56 SDFFAAAFARERSAVEELLEGGESVEKLEEAAARLQGLQKLINDSVLFLAAYDLRQGQEV 115

Query:   133 ISDLRQNLDTLTAHIXXXXXXXXXXXXXXXETHIINQDTECNTVSLPELKKTSLPVR--- 189
             ++ L+  L      +                +     D+     +   +  +S P++   
Sbjct:   116 LARLQAALAKRRQELQPKKRFAFKTRRKDIAS-ATKVDSAPGAPAADGILASSPPLKEEG 174

Query:   190 --DSP---GFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVY 244
               DS    GF + QS+VL K        +  L+ L +C +KL G+ N L + + + C + 
Sbjct:   175 GFDSSWVCGFSNLQSEVLEKRADELHQRDVLLTQLSNCTIKLYGNPNTLRLTKARGCTLL 234

Query:   245 VGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKY 304
              GPV  S+ +E+  +C+L +   Q+R+H  K +  +L   SR I+ED   ++FAPY   Y
Sbjct:   235 CGPVSTSVFLEDCSDCVLAVACQQLRVHTTKDTRVFLLVTSRAIVEDCTGIQFAPYTWSY 294

Query:   305 KGIEADLEVAGLNEETGNWTNVDDFKWL-RAVQSPNWSVLPEEER 348
              GI+ D E +GL+    NW +VDDF WL R V SPNWS+LPEEER
Sbjct:   295 PGIDKDFEGSGLDRSKNNWNDVDDFNWLARDVASPNWSILPEEER 339

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0000902 "cell morphogenesis" evidence=IEA

UNIPROTKB|Q15814 TBCC "Tubulin-specific chaperone C" [Homo sapiens (taxid:9606)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 96/322 (29%), Positives = 161/322 (50%)

Query:    36 IPDETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIESAA 95
             +P E LQ++ Q    +L V  + R + R+    +  ++  F++ F   + ++   +E A 
Sbjct:    25 VP-ERLQRREQE--RQLEV--ERRKQKRQNQEVEKENSHFFVATFVRERAAVEELLERAE 79

Query:    96 DPSCLTDISSSISDLEKLVAENSYCLPSYEIR------ASLKT-ISDLRQNLDTLTAHIX 148
                 L + +S +  L+KL+ ++ + L +Y++R      A L+  +++ R+ L        
Sbjct:    80 SVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKRFAF 139

Query:   149 XXXXXXXXXXXXXXETHIINQDTECNTVS-LPELKKTSLPVRDSPGFRDKQSQVLVKNFK 207
                               I    E    S LP+  +  L      GF + +SQVL K   
Sbjct:   140 KTRGKDAASSTKVDAAPGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRAS 199

Query:   208 GSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSH 267
                  +  L+ L +C V+L G+ N L + +  +CK+  GPV  S+ +E+  +C+L +   
Sbjct:   200 ELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQ 259

Query:   268 QIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVD 327
             Q+RIH  K +  +L+  SR I+ED + ++FAPY   Y  I+ D E +GL+    NW +VD
Sbjct:   260 QLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKNNWNDVD 319

Query:   328 DFKWL-RAVQSPNWSVLPEEER 348
             DF WL R + SPNWS+LPEEER
Sbjct:   320 DFNWLARDMASPNWSILPEEER 341

GO:0000902 "cell morphogenesis" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0032391 "photoreceptor connecting cilium" evidence=IDA

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0051087 "chaperone binding" evidence=TAS

GO:0005856 "cytoskeleton" evidence=TAS

GO:0005874 "microtubule" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IDA

MGI|MGI:1919976 Tbcc "tubulin-specific chaperone C" [Mus musculus (taxid:10090)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 91/318 (28%), Positives = 154/318 (48%)

Query:    36 IPDETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIESAA 95
             +P E LQ++ Q    ++ V  + R + R+    +   +  F + F   + ++   +   A
Sbjct:    24 VP-ERLQRREQE--RQIEV--ERRKQKRQDQEVEEEKSGFFAAAFARERAAVEELLRGEA 78

Query:    96 DPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIX-XXXXXX 154
                 L + ++ +  L KL+ ++   L +Y++R     ++ L+  L      +        
Sbjct:    79 SAERLEEAANRLQGLRKLLNDSVLFLAAYDLRQGQAALAQLQAVLTERRQELQPKKRFAF 138

Query:   155 XXXXXXXXETHIINQDTECNTVSLPELKKTS--LPVRD-SPGFRDKQSQVLVKNFKGSEI 211
                      T  ++     +    P + K     P    + GF + +SQ L K  +    
Sbjct:   139 KARKKDAAGTAQVDAAPVTSAAPSPPVTKEEEGAPGASWACGFSNLESQDLEKRAEELHQ 198

Query:   212 GEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRI 271
              +  LS L +C VKL G+ N L + + + CKV  GPV  S+ +E+  +C+L +   Q+R+
Sbjct:   199 RDVLLSDLTNCTVKLCGNPNTLRLAKARGCKVLCGPVTTSVFLEDCRDCVLAVACQQLRV 258

Query:   272 HFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKW 331
             H  K +  +L+  SR I+ED + ++FAPY   Y GI+ D + +GL+    NW  VDDF W
Sbjct:   259 HTTKDTRVFLQVTSRAIVEDCSGIQFAPYTWSYPGIDKDFQDSGLDRSKNNWDQVDDFNW 318

Query:   332 L-RAVQSPNWSVLPEEER 348
             L R V SPNWS+LPEEER
Sbjct:   319 LARNVASPNWSILPEEER 336

GO:0003924 "GTPase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=ISO

GO:0032391 "photoreceptor connecting cilium" evidence=ISO

UNIPROTKB|Q5R5J7 TBCC "Tubulin-specific chaperone C" [Pongo abelii (taxid:9601)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 95/322 (29%), Positives = 159/322 (49%)

Query:    36 IPDETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIESAA 95
             +P E LQ++ Q    +L V  + R + R+    +  ++  F + F   + ++   +E A 
Sbjct:    25 VP-ERLQRREQE--RQLEV--ERRKQKRQNQEVEKENSHFFAATFARERAAVEELLERAE 79

Query:    96 DPSCLTDISSSISDLEKLVAENSYCLPSYEIR------ASLKT-ISDLRQNLDTLTAHIX 148
                 L + +S +  L+KL+ ++ + L +Y++R      A L+  +++ R+ L        
Sbjct:    80 SVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRELQPKKRFAF 139

Query:   149 XXXXXXXXXXXXXXETHIINQDTECNTVS-LPELKKTSLPVRDSPGFRDKQSQVLVKNFK 207
                               I    E    S LP+  +  L      GF + +SQVL K   
Sbjct:   140 KTRGKDAASCTKVDAAPGIPPAVESIQDSPLPKKAEGDLGSSWLCGFSNLESQVLEKRAS 199

Query:   208 GSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSH 267
                  +  L+ L +C V+L G+ N L + +  +CK+  GPV  S+ +E+  +C+L +   
Sbjct:   200 ELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQ 259

Query:   268 QIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVD 327
             Q+RIH  K +  +L+  SR I+ED + ++FAPY   Y  I+ D E +GL+    NW +VD
Sbjct:   260 QLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKNNWNDVD 319

Query:   328 DFKWL-RAVQSPNWSVLPEEER 348
             DF WL R + SPNW +LPEEER
Sbjct:   320 DFNWLARDMASPNWCILPEEER 341

GO:0003924 "GTPase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=ISS

GO:0032391 "photoreceptor connecting cilium" evidence=ISS

RGD|1306756 Tbcc "tubulin folding cofactor C" [Rattus norvegicus (taxid:10116)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 88/317 (27%), Positives = 155/317 (48%)

Query:    36 IPDETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIESAA 95
             +P E LQ++ Q    ++ V  + R + R+    +   +  F + F   + +    ++  A
Sbjct:    24 VP-ERLQRREQE--RQMEV--ERRKQKRQDQEVEEEKSGFFAAAFARERAAAEELLQGEA 78

Query:    96 DPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIX-XXXXXX 154
                 L + ++ +  L KL+ ++   L +Y++R     ++ L+  L      +        
Sbjct:    79 SAERLEEAANRLQALRKLLNDSVLFLAAYDLRQGQAALAQLQSVLTERRQELQPKKRFAF 138

Query:   155 XXXXXXXXETHIINQDTECNTVSLPEL-KKTSLPVRD-SPGFRDKQSQVLVKNFKGSEIG 212
                      T  ++     +    P L ++   P    + GF + +SQ L K  +     
Sbjct:   139 KARKKDAAGTAQVDAAPVTSAAPSPPLTEEEGAPGASWACGFSNLESQDLEKRAEELHQR 198

Query:   213 EFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIH 272
             +  LS L +C V+L G+ N L + + + CKV  GPV  S+ +E+  +C+L +   Q+R+H
Sbjct:   199 DILLSDLTNCTVRLRGNPNTLRLAKARGCKVLCGPVTTSVFLEDCRDCILAVACQQLRVH 258

Query:   273 FAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL 332
               K +  +L+  SR I+ED + ++FAPY   Y GI+ D + +GL+    NW  VDDF WL
Sbjct:   259 TTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPGIDKDFQDSGLDRSKNNWNQVDDFNWL 318

Query:   333 -RAVQSPNWSVLPEEER 348
              + V SPNWS+LPEE+R
Sbjct:   319 AQNVPSPNWSILPEEDR 335

GO:0003924 "GTPase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=ISO

GO:0032391 "photoreceptor connecting cilium" evidence=ISO

UNIPROTKB|F1P5Q9 TBCC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 318 (117.0 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
 Identities = 60/135 (44%), Positives = 84/135 (62%)

Query:   213 EFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIH 272
             +  L  L  C+V+L G+ N L + + + C V  GPV  S+L++    C LV+   Q+R H
Sbjct:   152 DVVLEELRGCQVRLRGNPNTLRVRECRGCTVLCGPVSTSVLVDGCSECQLVVACQQLRTH 211

Query:   273 FAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL 332
               + S FY++  SR +IED +EV FAPY   Y GIEAD E +GL+  + NW  VDDF WL
Sbjct:   212 RTRGSRFYVQVTSRAVIEDCSEVSFAPYTWSYPGIEADFESSGLDRNSNNWNLVDDFDWL 271

Query:   333 RAVQ-SPNWSVLPEE 346
              + + SPNWS++PEE
Sbjct:   272 ASDRPSPNWSLIPEE 286

GO:0000902 "cell morphogenesis" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

UNIPROTKB|F1NHK7 TBCC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 63/142 (44%), Positives = 88/142 (61%)

Query:   213 EFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIH 272
             +  L  L  C+V+L G+ N L + + + C V  GPV  S+L++    C LV+   Q+R H
Sbjct:    47 DVVLEELRGCQVRLRGNPNTLRVRECRGCTVLCGPVSTSVLVDGCSECQLVVACQQLRTH 106

Query:   273 FAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL 332
               + S FY++  SR +IED +EV FAPY   Y GIEAD E +GL+  + NW  VDDF WL
Sbjct:   107 RTRGSRFYVQVTSRAVIEDCSEVSFAPYTWSYPGIEADFESSGLDRNSNNWNLVDDFDWL 166

Query:   333 RAVQ-SPNWSVLPEEERIGTVD 353
              + + SPNWS++PEEER+   D
Sbjct:   167 ASDRPSPNWSLIPEEERVSCWD 188

GO:0000902 "cell morphogenesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q15814	TBCC_HUMAN	No assigned EC number	0.3018	0.8159	0.8583	yes	no
Q9SMR2	TBCC_ARATH	No assigned EC number	0.5891	0.8351	0.8811	yes	no
Q3SZE9	TBCC_BOVIN	No assigned EC number	0.3070	0.8928	0.9420	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007765001 SubName- Full=Chromosome undetermined scaffold_1054, whole genome shotgun sequence; Flags- Fragment; (365 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	364
pfam07986	119	pfam07986, TBCC, Tubulin binding cofactor C	4e-42
smart00673	38	smart00673, CARP, Domain in CAPs (cyclase-associat	3e-04

>gnl|CDD|219683 pfam07986, TBCC, Tubulin binding cofactor C

 Score =  142 bits (361), Expect = 4e-42
 Identities = 55/119 (46%), Positives = 75/119 (63%), Gaps = 2/119 (1%)

Query: 212 GEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRI 271
            + TLS L +C + L+  +++L I+  K+C + +GPV GS+ I + ENC +V+   Q+RI
Sbjct: 2   SDVTLSNLSNCTIYLLDPLSSLTIDNCKDCTIILGPVSGSVFIRDCENCTIVVACRQLRI 61

Query: 272 HFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGN-WTNVDDF 329
           H     DFYL   SRPIIEDS+ +RFAPY   Y G+E  L  AGL+ E  N W  VDDF
Sbjct: 62  HDCTNCDFYLHTTSRPIIEDSSGIRFAPYNT-YYGLEEHLASAGLDPEENNLWDQVDDF 119

Members of this family are involved in the folding pathway of tubulins and form a beta helix structure. Length = 119

>gnl|CDD|197827 smart00673, CARP, Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 219 LDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIE 255
            +SC +++ G VN + I++ K C +Y+GPV GS  I 
Sbjct: 1   CESCTIQVSGKVNTISIDKCKKCSIYLGPVSGSPEIV 37

Length = 38

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	364
KOG2512	337	consensus Beta-tubulin folding cofactor C [Posttra	100.0
PF07986	120	TBCC: Tubulin binding cofactor C; InterPro: IPR012	100.0
KOG4416	605	consensus Uncharacterized conserved protein [Funct	99.67
KOG2512	337	consensus Beta-tubulin folding cofactor C [Posttra	99.03
PF07986	120	TBCC: Tubulin binding cofactor C; InterPro: IPR012	98.49
smart00673	38	CARP Domain in CAPs (cyclase-associated proteins)	98.29
PF08603	159	CAP_C: Adenylate cyclase associated (CAP) C termin	97.87
smart00673	38	CARP Domain in CAPs (cyclase-associated proteins)	97.11
KOG2675	480	consensus Adenylate cyclase-associated protein (CA	96.97
PF08603	159	CAP_C: Adenylate cyclase associated (CAP) C termin	95.83
KOG4416	605	consensus Uncharacterized conserved protein [Funct	94.76
KOG2675	480	consensus Adenylate cyclase-associated protein (CA	85.51

>KOG2512 consensus Beta-tubulin folding cofactor C [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.3e-57  Score=430.51  Aligned_cols=318  Identities=32%  Similarity=0.484  Sum_probs=266.5

Q ss_pred             ccCCCCCCCCCCchhhhhhhhhHHHHHHHHHHHHhhhc-CCC----CCCCCchHHHHHHHHHHHHHHHHHHhhcCChh-h
Q 017913           26 MEGEETPHRQIPDETLQKKHQSMIHRLAVRHQTRLETR-KPD----SPDSSSTSAFLSRFNDFKNSITTQIESAADPS-C   99 (364)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~erl~~R~~~r~~~~-~~~----~~~~e~~~~F~~~F~~~~~~ie~~L~~~~~~~-~   99 (364)
                      |+|+.... ..++++.++|.  |+|||.+|+++|++++ .++    +...|.+++|..+|..+..+||++|+...--. .
T Consensus         1 Me~~~~~~-r~~d~e~r~~~--~~erl~kr~~drr~~v~~~~~~~s~~k~Es~~~f~~tf~~~t~~ie~~l~~~~~l~~~   77 (337)
T KOG2512|consen    1 MECSFSKR-RTGDKESRKKN--ELERLKKRSWDRREKVDPKDRSNSTLKKESVDRFPATFAGSTADIEERLNENEYLERF   77 (337)
T ss_pred             Cccchhhh-hccChhhhhhh--hhcccchhhhhhhhcCChhhhhhhhhhhhhhhhhhHhHhccchhHHHHHHHHHHHHHH
Confidence            45666555 67787777766  9999999999999999 333    33389999999999999999999998542212 6


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCceeccCCCCccc-cc------ccCCcc
Q 017913          100 LTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKKFSFKNKPVKKET-HI------INQDTE  172 (364)
Q Consensus       100 l~~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~~L~~~l~~~r~~l~PKkKF~Fk~k~~~~~~-~~------~~~~~~  172 (364)
                      +++++..|++|++.+++..+|||+|+.|.|++.+..|+.++++.|..++|||+|.|+.+.+-.++ ++      .+....
T Consensus        78 l~e~tv~Iddl~~~l~~~~~fl~sy~vR~c~~~l~~Lt~~l~~~R~dl~pkk~F~f~~t~~~vkSStki~fa~~~Pe~k~  157 (337)
T KOG2512|consen   78 LEEATVTIDDLTRCLIELGPFLGSYFVRSCQNCLCTLTCQLDRTRHDLLPKKKFLFCATGPIVKSSTKIKFAPYYPELKD  157 (337)
T ss_pred             HHHhHhHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhcccccceeeeccCCcccccccccccccCCCcchh
Confidence            89999999999999999999999999999999999999999999999999999999975542121 11      011000


Q ss_pred             --ccCCCCcccccCCCCCCCCCceecccCcEEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccc
Q 017913          173 --CNTVSLPELKKTSLPVRDSPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMG  250 (364)
Q Consensus       173 --~~~~~~~~~~~~~~~~~~~~~i~n~~~~~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~G  250 (364)
                        ..+..+........-..+.++.+|..+.+++  ...+.+.+++++.|.+|.|.|.|+++++++++.++|.+++||+.|
T Consensus       158 ~~~dapl~~f~ndl~pv~~~~~~~~n~e~~vl~--~p~~~~~~~~~~~l~~c~v~l~g~~~a~~l~ratkcs~l~~p~~g  235 (337)
T KOG2512|consen  158 QIKDAPLSKFPNDLGPVSGWTPANRNPEDNVLV--VPEVTQEEVTASELSSCAVRLIGPPSAVFLHRATKCSLLCGPFAG  235 (337)
T ss_pred             hhhhCCCccCCccccccccccccccCCCCceEE--cCCcccchhhHHHhhhcceeEecCCCcceeccccccccccCceee
Confidence              0000000011100012556778888888887  556678999999999999999999999999999999999999999


Q ss_pred             eEEEEecCCcEEEEEeeeEEEcceeeeEEEEEccCCCeEeCCCcceeecCCCCccchHHHHHHcCCCCCCCCCCccccCC
Q 017913          251 SILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFK  330 (364)
Q Consensus       251 Sv~I~~c~nc~ivvac~QlRiH~~~~~~~yl~~~S~PIIEdC~~I~Fapy~~~Y~~le~~l~~agl~~~~n~w~~V~DF~  330 (364)
                      |+||+||.+|++.+||||||+|.+++++||++|+++||||||++|.||||.+.|+.++.+|..+| +.+.|||..|+|||
T Consensus       236 si~~~d~~D~~l~~ac~qlrlh~tk~~rv~l~~~~r~iiedsk~i~Fapy~~~~p~i~~d~~~~g-~~~~nn~~~v~dFn  314 (337)
T KOG2512|consen  236 SIFISDAEDCTLEVACHQLRLHSTKEVRVYLRVTSRPIIEDSKGIDFAPYLNDYPVIDLDFNGSG-AVEVNNLIDVDDFN  314 (337)
T ss_pred             eeeccchHHHHHHHHHhheeeEeeccceEEEEecccceeecccCCcchhhhhcCchhhhhccccc-hhhhcccceecccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             CCC-CCCCCCceec--CCCccC
Q 017913          331 WLR-AVQSPNWSVL--PEEERI  349 (364)
Q Consensus       331 wlk-~~~SPNWsil--~e~er~  349 (364)
                      |++ ..+||||+++  |++++.
T Consensus       315 wl~~~v~sPn~sll~~pd~~~n  336 (337)
T KOG2512|consen  315 WLSMDVPSPNWSLLGDPDEFRN  336 (337)
T ss_pred             ccccccCCcchhhhcCcchhcc
Confidence            998 7899999999  877653

>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC)

Probab=100.00  E-value=5.8e-40  Score=279.35  Aligned_cols=119  Identities=41%  Similarity=0.822  Sum_probs=96.7

Q ss_pred             ccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEeeeEEEcceeeeEEEEEccCCCeEe
Q 017913          211 IGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIE  290 (364)
Q Consensus       211 ~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac~QlRiH~~~~~~~yl~~~S~PIIE  290 (364)
                      |.++.|+||++|+|++.+++++++|++|++|+|++|||.|||+|++|+||+|+++|+|||+|+|+||+||++++++||||
T Consensus         1 g~~~~i~n~~~c~I~l~~~~~~v~i~~~~~c~i~~g~v~gsv~i~~c~n~~i~~~~~QlRih~~~n~~~~l~~~s~piIE   80 (120)
T PF07986_consen    1 GSDVTISNCSNCTIYLLDPLSSVHIDNCKNCTIVLGPVSGSVFIENCENCTIIVACRQLRIHNSTNCTFYLHTNSRPIIE   80 (120)
T ss_dssp             T-EEEEES-BS-EEEE-S-BS-EEEES-BS-EEEEEEECCEEEEES-ECEEEEEEECEEEEES-ECEEEEEEESSEEEEE
T ss_pred             CCcEEEecCcCCEEEeCCCcceEEEeCCCCCEEEEeecCceEEEecCCceEEEEEcCCeEEccccceEEEEECCCCcEEe
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceeecCCCCccchHHHHHHcCCCCCCCC-CCccccC
Q 017913          291 DSNEVRFAPYCLKYKGIEADLEVAGLNEETGN-WTNVDDF  329 (364)
Q Consensus       291 dC~~I~Fapy~~~Y~~le~~l~~agl~~~~n~-w~~V~DF  329 (364)
                      +|++|+||||+..|+++++||+++||+++.|+ |++|+||
T Consensus        81 ~~~~i~fapy~~~y~~l~~~l~~~~l~~~~n~~w~~v~DF  120 (120)
T PF07986_consen   81 DCTGITFAPYNTHYPNLEEHLQRAGLDPEENNLWNQVDDF  120 (120)
T ss_dssp             S-ECEEEEE---B-TTCHHHHHHCT--TT----TS-EEES
T ss_pred             CCCCCEEEeCcccCcCHHHHHHHcCCCchhCCccCccCCC
Confidence            99999999999999999999999999998777 9999999

TBCC is a folding cofactor that participates in tubulin biogenesis along with the other tubulin folding cofactors A (TBCA), B (TBCB), E (TBCE) and D (TBCD), as well as the GTP-binding protein Arl2 [, ].; PDB: 2BX6_A 3BH7_B 3BH6_B 2YUH_A.

>KOG4416 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=9.9e-17  Score=160.67  Aligned_cols=137  Identities=15%  Similarity=0.291  Sum_probs=130.8

Q ss_pred             CCCceecccCcEEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEeeeE
Q 017913          190 DSPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQI  269 (364)
Q Consensus       190 ~~~~i~n~~~~~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac~Ql  269 (364)
                      ..+.+.+....+++++.+...|+++.+-||.++.|||+.++.++.+..|.+++|++|++...+++++|++.+++++|+.|
T Consensus       313 g~~~~~gV~k~Sl~k~a~~lkg~sVkv~~Cnes~iyLl~plr~~tv~~c~~s~~Vlg~agkt~~~h~c~rV~vi~~~~Ri  392 (605)
T KOG4416|consen  313 GPCNIEGVSKTSLIKQASDLKGRSVKVPNCNESVIYLLAPLRYATVFGCSDSTIVLGAAGKTTKVHHCERVHVIVAIKRI  392 (605)
T ss_pred             CccccccccccccccchhhhccceeeecccchhhhhhhcCcceeeeeccCCceEEEecccceeeeccccceEEEEEeeeE
Confidence            34567788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcceeeeEEEEEccCCCeE-eCCCcceeecCCCCccchHHHHHHcCCCCCCCCCCcc
Q 017913          270 RIHFAKRSDFYLRARSRPII-EDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNV  326 (364)
Q Consensus       270 RiH~~~~~~~yl~~~S~PII-EdC~~I~Fapy~~~Y~~le~~l~~agl~~~~n~w~~V  326 (364)
                      -|-+|+.|.||+.|..||.| .+-..++||||+..|+-|++||...||.+..|.|+.+
T Consensus       393 ~I~~~~ecvff~~v~~Rpli~~~n~~~~faP~~t~y~~Le~hM~~~gi~~~~n~wd~p  450 (605)
T KOG4416|consen  393 CIANCRECVFFLGVNQRPLIVGDNHKLQFAPYNTFYSHLEEHMYEVGIVPTINKWDVP  450 (605)
T ss_pred             EEecccceEEEeccCcceeeecCCceEEEeccccchHHHHHHHHhhceeeccccccch
Confidence            99999999999999999977 7999999999999999999999999999999999864

>KOG2512 consensus Beta-tubulin folding cofactor C [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=3.7e-12  Score=123.23  Aligned_cols=113  Identities=22%  Similarity=0.377  Sum_probs=98.0

Q ss_pred             ceEEcccCccEEEee--CccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEeeeEEEc-ceeeeEEEEEccCCCeE
Q 017913          213 EFTLSGLDSCEVKLV--GSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIH-FAKRSDFYLRARSRPII  289 (364)
Q Consensus       213 ~~~l~nl~~C~V~l~--~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac~QlRiH-~~~~~~~yl~~~S~PII  289 (364)
                      ...|+.+.+|..+|.  ..-.++.|++|++|++.+||.-||+++.+|.||+.-++|+|+|++ +|.--+.|+.+++.||+
T Consensus        61 t~~ie~~l~~~~~l~~~l~e~tv~Iddl~~~l~~~~~fl~sy~vR~c~~~l~~Lt~~l~~~R~dl~pkk~F~f~~t~~~v  140 (337)
T KOG2512|consen   61 TADIEERLNENEYLERFLEEATVTIDDLTRCLIELGPFLGSYFVRSCQNCLCTLTCQLDRTRHDLLPKKKFLFCATGPIV  140 (337)
T ss_pred             chhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhcccccceeeeccCCccc
Confidence            444555556655532  355689999999999999999999999999999999999999998 99999999999999999


Q ss_pred             eCCCcceeecCCCCccchHHHHHHcCCCCCCCCCCcccc
Q 017913          290 EDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDD  328 (364)
Q Consensus       290 EdC~~I~Fapy~~~Y~~le~~l~~agl~~~~n~w~~V~D  328 (364)
                      |.+++|.||||   ||.+.++++.+||....|..--|.+
T Consensus       141 kSStki~fa~~---~Pe~k~~~~dapl~~f~ndl~pv~~  176 (337)
T KOG2512|consen  141 KSSTKIKFAPY---YPELKDQIKDAPLSKFPNDLGPVSG  176 (337)
T ss_pred             ccccccccccC---CCcchhhhhhCCCccCCcccccccc
Confidence            99999999885   8999999999999999996555533

>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC)

Probab=98.49  E-value=7.5e-07  Score=75.84  Aligned_cols=94  Identities=16%  Similarity=0.236  Sum_probs=68.3

Q ss_pred             CceecccCcEEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEe-eeEE
Q 017913          192 PGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVS-HQIR  270 (364)
Q Consensus       192 ~~i~n~~~~~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac-~QlR  270 (364)
                      +.++|.++.+|.+...   -+.+.|.||++|+|++....++++|++|+||+|++  ..+.+.|++|.||.|++.+ ..-.
T Consensus         4 ~~i~n~~~c~I~l~~~---~~~v~i~~~~~c~i~~g~v~gsv~i~~c~n~~i~~--~~~QlRih~~~n~~~~l~~~s~pi   78 (120)
T PF07986_consen    4 VTISNCSNCTIYLLDP---LSSVHIDNCKNCTIVLGPVSGSVFIENCENCTIIV--ACRQLRIHNSTNCTFYLHTNSRPI   78 (120)
T ss_dssp             EEEES-BS-EEEE-S----BS-EEEES-BS-EEEEEEECCEEEEES-ECEEEEE--EECEEEEES-ECEEEEEEESSEEE
T ss_pred             EEEecCcCCEEEeCCC---cceEEEeCCCCCEEEEeecCceEEEecCCceEEEE--EcCCeEEccccceEEEEECCCCcE
Confidence            4688889999988432   46899999999999998788999999999999986  4588999999999999965 4778


Q ss_pred             EcceeeeEEEEEccCCCeEe
Q 017913          271 IHFAKRSDFYLRARSRPIIE  290 (364)
Q Consensus       271 iH~~~~~~~yl~~~S~PIIE  290 (364)
                      +.+|+++.|.=+-..-|-+|
T Consensus        79 IE~~~~i~fapy~~~y~~l~   98 (120)
T PF07986_consen   79 IEDCTGITFAPYNTHYPNLE   98 (120)
T ss_dssp             EES-ECEEEEE---B-TTCH
T ss_pred             EeCCCCCEEEeCcccCcCHH
Confidence            89999999998776666665

TBCC is a folding cofactor that participates in tubulin biogenesis along with the other tubulin folding cofactors A (TBCA), B (TBCB), E (TBCE) and D (TBCD), as well as the GTP-binding protein Arl2 [, ].; PDB: 2BX6_A 3BH7_B 3BH6_B 2YUH_A.

>smart00673 CARP Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product

Probab=98.29  E-value=1.3e-06  Score=59.40  Aligned_cols=38  Identities=39%  Similarity=0.805  Sum_probs=36.2

Q ss_pred             cCccEEEeeCccceEEEecccCcEEEEeeccceEEEEe
Q 017913          219 LDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEE  256 (364)
Q Consensus       219 l~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~  256 (364)
                      |++|+|++.|.+.+++|++|++|.|++||+.++++|.+
T Consensus         1 C~~~~i~v~g~~~~v~id~~~~~~i~l~~~~~s~~i~~   38 (38)
T smart00673        1 CESCTIQVSGKVNTISIDKCKKCSIYLGPVSGSPEIVN   38 (38)
T ss_pred             CCcEEEEEeCccCEEEEECCCCeEEEECCceeEEEEEC
Confidence            68999999999999999999999999999999999875

>PF08603 CAP_C: Adenylate cyclase associated (CAP) C terminal; InterPro: IPR013912 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals

Probab=97.87  E-value=3.3e-05  Score=69.16  Aligned_cols=108  Identities=18%  Similarity=0.257  Sum_probs=79.9

Q ss_pred             CCCceecccCcE-EEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEE--Ee
Q 017913          190 DSPGFRDKQSQV-LVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVL--VS  266 (364)
Q Consensus       190 ~~~~i~n~~~~~-i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivv--ac  266 (364)
                      +.+.+.|..|.. +++...+ -...+.|.+|.||+|.+.|.+.++.|.+|++|.+++.-+-+++-|-+|.++.+-+  .|
T Consensus        11 ~kW~Ve~~~~~~~~~~~~~~-~~qsVyI~~C~n~~i~IkgKvnsItid~C~k~~vv~ds~Is~vEvinc~~~~vQv~g~v   89 (159)
T PF08603_consen   11 NKWFVENQENNKELVIEEVE-MKQSVYIYNCKNSTIQIKGKVNSITIDNCKKCSVVFDSVISSVEVINCKSVQVQVLGKV   89 (159)
T ss_dssp             TEEEEECEBS-SSEEEEE---TT-EEEEEEEESEEEEEESEBSEEEEEEEEEEEEEECEBSSEEEEESEEEEEEEESS--
T ss_pred             CEEEEEeccCCCCceEeccC-CCcEEEEEcccccEEEECceEEEEEEEcCCcEEEEEcCEEEEEEEEecCcEeEEEEccC
Confidence            356677777765 4443332 2468999999999999999999999999999999999988999999999999888  57


Q ss_pred             eeEEEcceeeeEEEEEccC--CCeE-eCCCcceee
Q 017913          267 HQIRIHFAKRSDFYLRARS--RPII-EDSNEVRFA  298 (364)
Q Consensus       267 ~QlRiH~~~~~~~yl~~~S--~PII-EdC~~I~Fa  298 (364)
                      ..+-+..|.++.+||.-.+  .-|+ --|+.|-+.
T Consensus        90 Pti~iDktdg~~iyLsk~s~~~eivtskss~mNv~  124 (159)
T PF08603_consen   90 PTISIDKTDGCQIYLSKESLDTEIVTSKSSEMNVN  124 (159)
T ss_dssp             SEEEEES-EEEEEE--CCCTT-EEEEES-EEEEEE
T ss_pred             CEEEEeccccEEEEECcccccEEEEEEccccEEEE
Confidence            8999999999999998765  2344 345555443

CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the C-terminal domain of CAP proteins, which is responsible for G-actin-binding. This domain has a superhelical structure, where the superhelix turns are made of two beta-strands each []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1K4Z_B 1KQ5_A 2B0R_A 1K8F_B.

>smart00673 CARP Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product

Probab=97.11  E-value=0.00052  Score=46.53  Aligned_cols=35  Identities=26%  Similarity=0.477  Sum_probs=31.2

Q ss_pred             cCCcEEEEE--eeeEEEcceeeeEEEEE-ccCCCeEeC
Q 017913          257 VENCLLVLV--SHQIRIHFAKRSDFYLR-ARSRPIIED  291 (364)
Q Consensus       257 c~nc~ivva--c~QlRiH~~~~~~~yl~-~~S~PIIEd  291 (364)
                      |.+|++.+.  |.++++|+|++|.||+. +.+.+.|++
T Consensus         1 C~~~~i~v~g~~~~v~id~~~~~~i~l~~~~~s~~i~~   38 (38)
T smart00673        1 CESCTIQVSGKVNTISIDKCKKCSIYLGPVSGSPEIVN   38 (38)
T ss_pred             CCcEEEEEeCccCEEEEECCCCeEEEECCceeEEEEEC
Confidence            789999998  99999999999999998 777777764

>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]

Probab=96.97  E-value=0.0025  Score=64.83  Aligned_cols=88  Identities=16%  Similarity=0.269  Sum_probs=73.3

Q ss_pred             ccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEe--eeEEEcceeeeEEEEEccC--C
Q 017913          211 IGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVS--HQIRIHFAKRSDFYLRARS--R  286 (364)
Q Consensus       211 ~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac--~QlRiH~~~~~~~yl~~~S--~  286 (364)
                      ...+.|-.|+||+|.|.|.+.++.|++|+.|-|++-.+-|-+-|-+|.+..+-+--  -+|-|..|.+|.+||.-.+  -
T Consensus       353 kqsvyIykC~~s~iqIkGKvNsItld~Ckk~svVfD~~Va~~eiinc~~v~iQv~g~~PtiSI~ktdGc~iYLSk~sL~~  432 (480)
T KOG2675|consen  353 KQSVYIYKCSNSTIQIKGKVNSITLDNCKKTSVVFDDLVAIVEIINCQDVQIQVMGSVPTISIDKTDGCHIYLSKDSLDC  432 (480)
T ss_pred             cceEEEEeccceEEEEeceeeeEEecCCceeeEEEeccceeeEEeeccceeeEEcccCCeEEEecCCCeeEEeccccccc
Confidence            36899999999999999999999999999999999888888999999998887754  4999999999999997543  3


Q ss_pred             CeEe-CCCcceee
Q 017913          287 PIIE-DSNEVRFA  298 (364)
Q Consensus       287 PIIE-dC~~I~Fa  298 (364)
                      -|.- .++.|-+.
T Consensus       433 eIvtsKSsemNi~  445 (480)
T KOG2675|consen  433 EIVTSKSSEMNIN  445 (480)
T ss_pred             eEEeecccceeEe
Confidence            3443 34455443

>PF08603 CAP_C: Adenylate cyclase associated (CAP) C terminal; InterPro: IPR013912 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals

Probab=95.83  E-value=0.052  Score=48.79  Aligned_cols=70  Identities=17%  Similarity=0.311  Sum_probs=53.3

Q ss_pred             CccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEe--eeEEEcceeeeEEEEEccCCCe--EeCCCcceee
Q 017913          228 GSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVS--HQIRIHFAKRSDFYLRARSRPI--IEDSNEVRFA  298 (364)
Q Consensus       228 ~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac--~QlRiH~~~~~~~yl~~~S~PI--IEdC~~I~Fa  298 (364)
                      .+-.+++|.+|.||+|.+--=--+|.|++|.+|.|++..  -.+.+-+|.++.+.+.. .-|.  |+.|.|+.+.
T Consensus        30 ~~~qsVyI~~C~n~~i~IkgKvnsItid~C~k~~vv~ds~Is~vEvinc~~~~vQv~g-~vPti~iDktdg~~iy  103 (159)
T PF08603_consen   30 EMKQSVYIYNCKNSTIQIKGKVNSITIDNCKKCSVVFDSVISSVEVINCKSVQVQVLG-KVPTISIDKTDGCQIY  103 (159)
T ss_dssp             -TT-EEEEEEEESEEEEEESEBSEEEEEEEEEEEEEECEBSSEEEEESEEEEEEEESS---SEEEEES-EEEEEE
T ss_pred             CCCcEEEEEcccccEEEECceEEEEEEEcCCcEEEEEcCEEEEEEEEecCcEeEEEEc-cCCEEEEeccccEEEE
Confidence            456789999999999877444457999999999999865  48999999999998754 3443  5889999876

CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the C-terminal domain of CAP proteins, which is responsible for G-actin-binding. This domain has a superhelical structure, where the superhelix turns are made of two beta-strands each []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1K4Z_B 1KQ5_A 2B0R_A 1K8F_B.

>KOG4416 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.76  E-value=0.071  Score=55.13  Aligned_cols=51  Identities=24%  Similarity=0.318  Sum_probs=40.5

Q ss_pred             cCCcEEEEEeeeEEEcceeeeEEEEEccCCCeEeCCCcceeecCCCCccch
Q 017913          257 VENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGI  307 (364)
Q Consensus       257 c~nc~ivvac~QlRiH~~~~~~~yl~~~S~PIIEdC~~I~Fapy~~~Y~~l  307 (364)
                      |.--.+-+.|||+-+.++++..+|---.-.|||-++.-+.|.||+..|.|-
T Consensus       454 c~~~~~~~~~~~~~vsDsq~~~~~~~~P~~~~~~~s~~v~~iPF~~e~eG~  504 (605)
T KOG4416|consen  454 CASDPHDSLSHPLGVSDSQAEEAYAVDPDKPIIFNSFTVFFIPFNGEYEGS  504 (605)
T ss_pred             cccCccccccccccccccccccceecCCCCceeeeeeEEEEeeccchhccc
Confidence            444444455677777888888888888889999999999999999888764

>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]

Probab=85.51  E-value=4.1  Score=42.08  Aligned_cols=81  Identities=9%  Similarity=0.126  Sum_probs=60.7

Q ss_pred             ccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEe--eeEEEcceeeeEEEEEccCCC-eEeCCCc
Q 017913          218 GLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVS--HQIRIHFAKRSDFYLRARSRP-IIEDSNE  294 (364)
Q Consensus       218 nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac--~QlRiH~~~~~~~yl~~~S~P-IIEdC~~  294 (364)
                      |-.|-+|.....=.+++|-.|.||+|.+--=-.+|.|++|+.|-+|+..  -|+-|-+|.++.+-+.-.-.- -|..|.|
T Consensus       341 ~~~~~Vi~~~e~kqsvyIykC~~s~iqIkGKvNsItld~Ckk~svVfD~~Va~~eiinc~~v~iQv~g~~PtiSI~ktdG  420 (480)
T KOG2675|consen  341 NNKNLVIDDAELKQSVYIYKCSNSTIQIKGKVNSITLDNCKKTSVVFDDLVAIVEIINCQDVQIQVMGSVPTISIDKTDG  420 (480)
T ss_pred             CCcceeeeeccccceEEEEeccceEEEEeceeeeEEecCCceeeEEEeccceeeEEeeccceeeEEcccCCeEEEecCCC
Confidence            3444555555566799999999999987433357999999999999864  689999999988876443222 3688999


Q ss_pred             ceee
Q 017913          295 VRFA  298 (364)
Q Consensus       295 I~Fa  298 (364)
                      +.+.
T Consensus       421 c~iY  424 (480)
T KOG2675|consen  421 CHIY  424 (480)
T ss_pred             eeEE
Confidence            8875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	364
2yuh_A	179	Solution Structure Of The C-Terminal Region In Huma		2e-32
3bh6_B	352	Crystal Structure Of The Rp2-Arl3 Complex Bound To		3e-14
2bx6_A	350	Crystal Structure Of The Human Retinitis Pigmentosa		4e-14

>pdb|2YUH|A Chain A, Solution Structure Of The C-Terminal Region In Human Tubulin Folding Cofactor C Length = 179

Iteration: 1
 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 193 GFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSI 252
           GF + +SQVL K        +  L+ L +C V+L G+ N L + +  +CK+  GPV  S+
Sbjct: 12  GFSNLESQVLEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSV 71
Query: 253 LIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLE 312
            +E+  +C+L +   Q+RIH  K +  +L+  SR I+ED + ++FAPY   Y  I+ D E
Sbjct: 72  FLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFE 131
Query: 313 VAGLNEETGNWTNVDDFKWL-RAVQSPNWSVLPEEER 348
            +GL+    NW +VDDF WL R + SPNWS+LPEEER
Sbjct: 132 SSGLDRSKNNWNDVDDFNWLARDMASPNWSILPEEER 168

>pdb|3BH6|B Chain B, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 352

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 213 EFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIH 272
           +F +   ++C + +      + I+   NC +++GPV GS+      +C   L   Q R+ 
Sbjct: 63  QFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVR 122
Query: 273 FAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL 332
             ++ + +L   ++PIIE S+ ++F  +   Y  +    + AGL+     W+N+ DF  +
Sbjct: 123 DCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPV 182
Query: 333 RAVQSPNWSVLPEE 346
                 NWS+LPE+
Sbjct: 183 SG--ELNWSLLPED 194

>pdb|2BX6|A Chain A, Crystal Structure Of The Human Retinitis Pigmentosa Protein 2 (Rp2) Length = 350

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 213 EFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIH 272
           +F +   ++C + +      + I+   NC +++GPV GS+      +C   L   Q R+ 
Sbjct: 61  QFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVR 120
Query: 273 FAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL 332
             ++ + +L   ++PIIE S+ ++F  +   Y  +    + AGL+     W+N+ DF  +
Sbjct: 121 DCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPV 180
Query: 333 RAVQSPNWSVLPEE 346
                 NWS+LPE+
Sbjct: 181 SG--ELNWSLLPED 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	364
2yuh_A	179	Tubulin-specific chaperone C; microtubule, beta-tu	2e-53
3bh7_B	352	Protein XRP2; protein-protein complex, GTPase acti	2e-46
2l3l_A	111	Tubulin-specific chaperone C; tubulin binding cofa	3e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08

>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding, beta-roll, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 179

 Score =  173 bits (439), Expect = 2e-53
 Identities = 66/162 (40%), Positives = 97/162 (59%), Gaps = 1/162 (0%)

Query: 193 GFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSI 252
           GF + +SQVL K        +  L+ L +C V+L G+ N L + +  +CK+  GPV  S+
Sbjct: 12  GFSNLESQVLEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSV 71

Query: 253 LIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLE 312
            +E+  +C+L +   Q+RIH  K +  +L+  SR I+ED + ++FAPY   Y  I+ D E
Sbjct: 72  FLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFE 131

Query: 313 VAGLNEETGNWTNVDDFKWL-RAVQSPNWSVLPEEERIGTVD 353
            +GL+    NW +VDDF WL R + SPNWS+LPEEER    D
Sbjct: 132 SSGLDRSKNNWNDVDDFNWLARDMASPNWSILPEEERNIQWD 173

>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A Length = 352

 Score =  160 bits (406), Expect = 2e-46
 Identities = 43/197 (21%), Positives = 86/197 (43%), Gaps = 5/197 (2%)

Query: 153 FSFKNKPVKKETHIINQDTECNTVSLPELKKTSLPVRDSPGFRDKQSQVLVKNFKGSEIG 212
           F  K +   KE+   N++      S  + +K          F   + + + +        
Sbjct: 6   FFSKRRKADKESRPENEEERPKQYSWDQREKVD---PKDYMFSGLKDETVGRLPGTVAGQ 62

Query: 213 EFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIH 272
           +F +   ++C + +      + I+   NC +++GPV GS+      +C   L   Q R+ 
Sbjct: 63  QFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVR 122

Query: 273 FAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL 332
             ++ + +L   ++PIIE S+ ++F  +   Y  +    + AGL+     W+N+ DF  +
Sbjct: 123 DCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPV 182

Query: 333 RAVQSPNWSVLPEEERI 349
                 NWS+LPE+  +
Sbjct: 183 S--GELNWSLLPEDAVV 197

>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens} Length = 111

 Score = 78.6 bits (193), Expect = 3e-18
 Identities = 24/113 (21%), Positives = 53/113 (46%), Gaps = 4/113 (3%)

Query: 39  ETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIESAADPS 98
           E LQ++ Q     +  R Q R    +    +  ++  F++ F   + ++   +E A    
Sbjct: 3   ERLQRREQERQLEVERRKQKR----QNQEVEKENSHFFVATFARERAAVEELLERAESVE 58

Query: 99  CLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKK 151
            L + +S +  L+KL+ ++ + L +Y++R   + ++ L+  L      + PKK
Sbjct: 59  RLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKK 111

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 58/382 (15%), Positives = 116/382 (30%), Gaps = 100/382 (26%)

Query: 33  HRQIPDETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIE 92
           +   P+  L+   Q +++++     +R      D   +        R +  +  +   ++
Sbjct: 191 NCNSPETVLEML-QKLLYQIDPNWTSR-----SDHSSNIK-----LRIHSIQAELRRLLK 239

Query: 93  SAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKK 152
           S    +CL  +  ++ + +   A N  C    +I   L T    +Q  D L+A       
Sbjct: 240 SKPYENCL-LVLLNVQNAKAWNAFNLSC----KI---LLTTRF-KQVTDFLSAATTTHIS 290

Query: 153 FSFKNKPV-KKET-HIINQDTECNTVSLPELKKTSLP---------VRDSPGFRDKQSQV 201
               +  +   E   ++ +  +C    LP    T+ P         +RD     D    V
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350

Query: 202 LVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGP--VMGSIL-----I 254
                  + I E +L+ L+  E +     + L +    +  +   P  ++ S++      
Sbjct: 351 NCDKL--TTIIESSLNVLEPAEYR--KMFDRLSVFP-PSAHI---PTILL-SLIWFDVIK 401

Query: 255 EEVENCLLVLVS----------HQIRIHFAKRSDFYLRARS---------RPIIEDSNEV 295
            +V   +  L              I I        YL  +          R I++  N  
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIP-----SIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 296 RFAPYCLKYKGIEAD-----------LEVAGLNEETGNWTNV-DDFKWLRA---VQSPNW 340
           +   +                     L+     E    +  V  DF++L       S  W
Sbjct: 457 K--TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514

Query: 341 ----SVLPEEERIGTVDLVDLE 358
               S+L          L  L+
Sbjct: 515 NASGSILN--------TLQQLK 528

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	364
2yuh_A	179	Tubulin-specific chaperone C; microtubule, beta-tu	100.0
3bh7_B	352	Protein XRP2; protein-protein complex, GTPase acti	100.0
2l3l_A	111	Tubulin-specific chaperone C; tubulin binding cofa	99.92
3bh7_B	352	Protein XRP2; protein-protein complex, GTPase acti	98.41
2yuh_A	179	Tubulin-specific chaperone C; microtubule, beta-tu	98.4
2b0r_A	202	Possible adenyl cyclase-associated protein; struct	97.88
1k8f_A	157	CAP, adenylyl cyclase-associated protein; actin bi	97.77
1k4z_A	159	CAP, adenylyl cyclase-associated protein; right-ha	97.69
1k8f_A	157	CAP, adenylyl cyclase-associated protein; actin bi	93.42
2b0r_A	202	Possible adenyl cyclase-associated protein; struct	91.23
1k4z_A	159	CAP, adenylyl cyclase-associated protein; right-ha	89.67

>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding, beta-roll, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=6.9e-54  Score=387.26  Aligned_cols=165  Identities=40%  Similarity=0.754  Sum_probs=160.5

Q ss_pred             CCCCceecccCcEEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEeee
Q 017913          189 RDSPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQ  268 (364)
Q Consensus       189 ~~~~~i~n~~~~~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac~Q  268 (364)
                      ...++|+|++|++|+++.++..+.++.|+||++|+|+|.+++++|+|++|++|+|++|||.|||||++|+||+|+++|+|
T Consensus         8 ~~~~~i~~~~~~~iv~~~~~~~~~~v~I~~c~~c~I~i~g~~~sl~i~~c~~c~Iv~g~V~gsv~i~~C~~~~i~v~c~Q   87 (179)
T 2yuh_A            8 SWVCGFSNLESQVLEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQ   87 (179)
T ss_dssp             CCEEECCSCBSCEEEECHHHHSSCEEEECSCBSCEEEECSCCSCEEEESCBSCEEECCCCSSCEEEESCBSCEEECCCSE
T ss_pred             CCeEEEEeeECCEEEECCccccCCeEEEecCcCCEEEEcCCccEEEEecCCCCEEEECCcccEEEEEeCCceEEEEEcCE
Confidence            35678999999999999887778999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcceeeeEEEEEccCCCeEeCCCcceeecCCCCccchHHHHHHcCCCCCCCCCCccccCCCC-CCCCCCCceecCCCc
Q 017913          269 IRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL-RAVQSPNWSVLPEEE  347 (364)
Q Consensus       269 lRiH~~~~~~~yl~~~S~PIIEdC~~I~Fapy~~~Y~~le~~l~~agl~~~~n~w~~V~DF~wl-k~~~SPNWsil~e~e  347 (364)
                      ||+|+|++|+|||+++++||||+|++|+||||++.|++|++||+++||++..|+|++|+||+|| ++.+||||++|||+|
T Consensus        88 lri~~~~~~~~yL~~~s~PIIE~c~~i~fapy~~~Y~~l~~~l~~agl~~~~n~W~~v~DF~wl~~~~~spnw~~l~~~~  167 (179)
T 2yuh_A           88 LRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKNNWNDVDDFNWLARDMASPNWSILPEEE  167 (179)
T ss_dssp             EEEESCBSCEEECCCSSEEEEESCBSEEEECCCCCCTTSHHHHHHHTCCSSCCCCSCEECCCCSSCSSCCTTEECCCSSS
T ss_pred             EEEeccCCeEEEEeCCCCcEEEcCCCceEecCccCCHhHHHHHHHcCCCcccCCcCCceeCCCcccCCCCCCcEECCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999 789999999999999


Q ss_pred             cCCccc
Q 017913          348 RIGTVD  353 (364)
Q Consensus       348 r~~~~~  353 (364)
                      |+++|+
T Consensus       168 ~~~~w~  173 (179)
T 2yuh_A          168 RNIQWD  173 (179)
T ss_dssp             CSCCCC
T ss_pred             ccCccc
Confidence            999998

>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A

Probab=100.00  E-value=1.6e-51  Score=405.43  Aligned_cols=176  Identities=22%  Similarity=0.472  Sum_probs=155.5

Q ss_pred             CCCCceeccCCCCcccccccCCccccCCCCcccccCCCCCCCCCceecccCcEEEecCCCCcccceEEcccCccEEEeeC
Q 017913          149 PKKKFSFKNKPVKKETHIINQDTECNTVSLPELKKTSLPVRDSPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVG  228 (364)
Q Consensus       149 PKkKF~Fk~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~~~~~i~~~~~~~~~~~~~l~nl~~C~V~l~~  228 (364)
                      .||||+|++|++..                          ...++|+|.+|++|++.++++.+.++.|+||++|+|||++
T Consensus        25 ~~k~~s~~~~~k~~--------------------------~~~~~i~~~~~~ti~~~~~~i~g~~v~I~nc~~c~I~l~~   78 (352)
T 3bh7_B           25 RPKQYSWDQREKVD--------------------------PKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFD   78 (352)
T ss_dssp             ----------------------------------------CCSSEEESCBSCEEEECTTSSTTCCEEEESCBSCEEEECS
T ss_pred             cCccccccccCCCC--------------------------CCceEEECccCCEEEECCCcccCCcEEEecCcCCEEEEec
Confidence            46889999986421                          1247899999999999999999999999999999999999


Q ss_pred             ccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEeeeEEEcceeeeEEEEEccCCCeEeCCCcceeecCCCCccchH
Q 017913          229 SVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIE  308 (364)
Q Consensus       229 ~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac~QlRiH~~~~~~~yl~~~S~PIIEdC~~I~Fapy~~~Y~~le  308 (364)
                      ++++|+|++|+||+|++|||.|||||++|+||+|+++|||||+|+|+||+|||+++|+||||||++|+|||||+.|++++
T Consensus        79 ~~~sl~I~~c~nC~Iv~GpV~gsv~I~~C~n~~i~vac~QlRih~c~n~~~yL~~~s~PIIEdc~~I~FaPyn~~Yp~l~  158 (352)
T 3bh7_B           79 HSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELA  158 (352)
T ss_dssp             CBSCEEEESCBSCEEEEEEEEEEEEEESCEEEEEEEEEEEEEEESCEEEEEEEEESSCCEEESCEEEEEEECCCBCTTHH
T ss_pred             CCceEEEecCCCCEEEEccccceEEEEcCCCcEEEEEcceEEEecccCcEEEEEcCCCcEEEcCCCceEEccccCCccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCccccCCCCCCCCCCCceecCCCccCCcc
Q 017913          309 ADLEVAGLNEETGNWTNVDDFKWLRAVQSPNWSVLPEEERIGTV  352 (364)
Q Consensus       309 ~~l~~agl~~~~n~w~~V~DF~wlk~~~SPNWsil~e~er~~~~  352 (364)
                      +||+.+||++..|+|++|+||+|++  +||||++||++++..+|
T Consensus       159 ~~l~~agL~~~~N~W~~V~DF~~~~--~spnw~ll~~~~~~~~~  200 (352)
T 3bh7_B          159 FQFKDAGLSIFNNTWSNIHDFTPVS--GELNWSLLPEDAVVQDY  200 (352)
T ss_dssp             HHHHHTTCCTTCCCCSCCEESSCBT--TBCSEEECCTTCCGGGT
T ss_pred             HHHHhcCCCccCCCCCCceeCCCCC--CCCCCEECChhhhhccc
Confidence            9999999999999999999999984  89999999999977553

>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}

Probab=99.92  E-value=1.2e-25  Score=187.86  Aligned_cols=104  Identities=23%  Similarity=0.396  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHhhhc---CCC----CCCCCchHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhccC
Q 017913           48 MIHRLAVRHQTRLETR---KPD----SPDSSSTSAFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYC  120 (364)
Q Consensus        48 ~~erl~~R~~~r~~~~---~~~----~~~~e~~~~F~~~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~das~~  120 (364)
                      |||||++||++|++++   |++    ++.+|++++|+++|++++++||++|++++-+++|++|.++|++|+++|+|+++|
T Consensus         1 ~~eRL~~R~~~R~~~~~~r~~~~~~~~~~~E~~~~F~~~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~f   80 (111)
T 2l3l_A            1 MPERLQRREQERQLEVERRKQKRQNQEVEKENSHFFVATFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFF   80 (111)
T ss_dssp             CCCCCCCHHHHHHTTHHHHTTSSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTT
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhh
Confidence            6899999999999988   333    333899999999999999999999998876778999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 017913          121 LPSYEIRASLKTISDLRQNLDTLTAHIVPKK  151 (364)
Q Consensus       121 Lp~YD~r~~~~~L~~L~~~l~~~r~~l~PKk  151 (364)
                      ||+||+|+|+++|+.|+..|+++|+++.|||
T Consensus        81 Lp~YD~R~~q~~i~~L~~~l~e~r~~l~PKK  111 (111)
T 2l3l_A           81 LAAYDLRQGQEALARLQAALAERRRGLQPKK  111 (111)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999997

>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A

Probab=98.41  E-value=8.8e-07  Score=87.17  Aligned_cols=97  Identities=19%  Similarity=0.359  Sum_probs=80.9

Q ss_pred             ccceEEcccCccEEEee-Cc--cceEEEecccCcEEEEeeccceEEEEecCCcEEEEE--eeeEEEcceeeeEEEEEccC
Q 017913          211 IGEFTLSGLDSCEVKLV-GS--VNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLV--SHQIRIHFAKRSDFYLRARS  285 (364)
Q Consensus       211 ~~~~~l~nl~~C~V~l~-~~--~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivva--c~QlRiH~~~~~~~yl~~~S  285 (364)
                      ...+.++|+++.+|... +.  -..+.|.||++|+|++...-.+++|++|.||+|++.  ..-+.+++|.||.|++-| .
T Consensus        39 ~~~~~i~~~~~~ti~~~~~~i~g~~v~I~nc~~c~I~l~~~~~sl~I~~c~nC~Iv~GpV~gsv~I~~C~n~~i~vac-~  117 (352)
T 3bh7_B           39 PKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLAC-Q  117 (352)
T ss_dssp             CCSSEEESCBSCEEEECTTSSTTCCEEEESCBSCEEEECSCBSCEEEESCBSCEEEEEEEEEEEEEESCEEEEEEEEE-E
T ss_pred             CCceEEECccCCEEEECCCcccCCcEEEecCcCCEEEEecCCceEEEecCCCCEEEEccccceEEEEcCCCcEEEEEc-c
Confidence            35899999999999775 32  258999999999999976678899999999999984  468999999999999965 5


Q ss_pred             CCeEeCCCcceeecCCCCccchH
Q 017913          286 RPIIEDSNEVRFAPYCLKYKGIE  308 (364)
Q Consensus       286 ~PIIEdC~~I~Fapy~~~Y~~le  308 (364)
                      +-.|.+|+++.|.=+...=|-+|
T Consensus       118 QlRih~c~n~~~yL~~~s~PIIE  140 (352)
T 3bh7_B          118 QFRVRDCRKLEVFLCCATQPIIE  140 (352)
T ss_dssp             EEEEESCEEEEEEEEESSCCEEE
T ss_pred             eEEEecccCcEEEEEcCCCcEEE
Confidence            67789999999997765544443

>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding, beta-roll, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.40  E-value=8.4e-07  Score=79.50  Aligned_cols=95  Identities=13%  Similarity=0.148  Sum_probs=80.6

Q ss_pred             CCceecccCcEEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEee-eE
Q 017913          191 SPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSH-QI  269 (364)
Q Consensus       191 ~~~i~n~~~~~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac~-Ql  269 (364)
                      ...+.+.++.+|.+...   -..++|.+|++|+|.+....++++|.||++|+|++.  ...+.|++|.||.|++.|. +-
T Consensus        32 ~v~I~~c~~c~I~i~g~---~~sl~i~~c~~c~Iv~g~V~gsv~i~~C~~~~i~v~--c~Qlri~~~~~~~~yL~~~s~P  106 (179)
T 2yuh_A           32 DVLLTELSNCTVRLYGN---PNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVA--CQQLRIHSTKDTRIFLQVTSRA  106 (179)
T ss_dssp             EEEECSCBSCEEEECSC---CSCEEEESCBSCEEECCCCSSCEEEESCBSCEEECC--CSEEEEESCBSCEEECCCSSEE
T ss_pred             eEEEecCcCCEEEEcCC---ccEEEEecCCCCEEEECCcccEEEEEeCCceEEEEE--cCEEEEeccCCeEEEEeCCCCc
Confidence            46788999999988642   479999999999999998999999999999999874  5789999999999999775 56


Q ss_pred             EEcceeeeEEEEEccCCCeEe
Q 017913          270 RIHFAKRSDFYLRARSRPIIE  290 (364)
Q Consensus       270 RiH~~~~~~~yl~~~S~PIIE  290 (364)
                      -|.+|++++|.=+-..=|-+|
T Consensus       107 IIE~c~~i~fapy~~~Y~~l~  127 (179)
T 2yuh_A          107 IVEDCSGIQFAPYTWSYPEID  127 (179)
T ss_dssp             EEESCBSEEEECCCCCCTTSH
T ss_pred             EEEcCCCceEecCccCCHhHH
Confidence            789999999887765555443

>2b0r_A Possible adenyl cyclase-associated protein; structural genomics consortium, SGC, unknown function; 2.60A {Cryptosporidium parvum}

Probab=97.88  E-value=3.5e-05  Score=69.73  Aligned_cols=109  Identities=15%  Similarity=0.246  Sum_probs=89.7

Q ss_pred             CCCCceecccC--cEEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEE--
Q 017913          189 RDSPGFRDKQS--QVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVL--  264 (364)
Q Consensus       189 ~~~~~i~n~~~--~~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivv--  264 (364)
                      .+.+.+.|..|  ..|++...+. ...+.|.+|.||+|.+.|.+.+|.|++|++|.|++--+=+++-|-+|.++.+-+  
T Consensus        49 G~KW~VEn~~~~~~~lvi~~~e~-~qsV~I~~C~nstI~IkGKvNsItld~C~k~~vv~dsvVSsvEvinc~~v~vQV~G  127 (202)
T 2b0r_A           49 KDTYLVENHVNCADPITLSEGSI-KNKVSVRCSQNSRIIVEQKVNSIFIENCVGCIFLVNGVISSIEIVNCDDIKLQMTG  127 (202)
T ss_dssp             TTEEEEECCBSCSSCEEECCCCT-TCEEEEEEEESCEEEECSCBSEEEEEEEEEEEEEECCBSSEEEEESCEEEEEEESS
T ss_pred             CCEEEEEeccCCCCCceEecccc-CcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEec
Confidence            34578888887  5566654433 469999999999999999999999999999999999999999999999999988  


Q ss_pred             EeeeEEEcceeeeEEEEEccC--CCeE-eCCCcceee
Q 017913          265 VSHQIRIHFAKRSDFYLRARS--RPII-EDSNEVRFA  298 (364)
Q Consensus       265 ac~QlRiH~~~~~~~yl~~~S--~PII-EdC~~I~Fa  298 (364)
                      .|..+-|..|.+|.|||.-.|  .-|+ --|++|-+.
T Consensus       128 ~vPTIsIDKtDg~qiYLSkeSl~teIvTSKSSemNV~  164 (202)
T 2b0r_A          128 IVPTISLDKSNKVNIYTSKEGKNVEVYSSKSSEMNLL  164 (202)
T ss_dssp             CCCEEEEESCEEEEEECCGGGTTCEEEEESCEEEEEE
T ss_pred             ccCEEEEEccCCEEEEEcccccCcEEEEecccceeEe
Confidence            578999999999999997542  3455 456665553

>1k8f_A CAP, adenylyl cyclase-associated protein; actin bindin structural genomics, PSI, protein structure initiative; 2.80A {Homo sapiens} SCOP: b.80.5.1

Probab=97.77  E-value=6.2e-05  Score=65.84  Aligned_cols=108  Identities=15%  Similarity=0.154  Sum_probs=87.1

Q ss_pred             CCCceecccCc-EEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEE--Ee
Q 017913          190 DSPGFRDKQSQ-VLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVL--VS  266 (364)
Q Consensus       190 ~~~~i~n~~~~-~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivv--ac  266 (364)
                      +.+.+.|..|. .++....+ -...+.|.+|.||+|.+.|.+.++.|++|++|.|++-.+=+++-+-+|.+..+-+  .|
T Consensus         9 ~KW~VEn~~~~~~~~i~~~~-~~qsV~I~~C~~s~I~IkGKvNsIsld~C~k~~vv~ds~VSsvevinc~~~~vQv~g~v   87 (157)
T 1k8f_A            9 KKWRVENQENVSNLVIEDTE-LKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKV   87 (157)
T ss_dssp             TEEEEESCBSCCCEEECCCC-TTCEEEEESCBSCEEEEEEEESEEEEESCEEEEEEEEEESSEEEEESCEEEEEEESSCC
T ss_pred             CEEEEEeccCCcccEEEccc-cCcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEeccc
Confidence            34677777763 35544333 2469999999999999999999999999999999999999999999999999988  68


Q ss_pred             eeEEEcceeeeEEEEEccC--CCeE-eCCCcceee
Q 017913          267 HQIRIHFAKRSDFYLRARS--RPII-EDSNEVRFA  298 (364)
Q Consensus       267 ~QlRiH~~~~~~~yl~~~S--~PII-EdC~~I~Fa  298 (364)
                      ..+-|..|.++.+||.-.|  ..|+ --|++|-..
T Consensus        88 PtisIDktdg~~iYLSkesl~~ei~TsKsS~mNv~  122 (157)
T 1k8f_A           88 PTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVL  122 (157)
T ss_dssp             SEEEEESCEEEEEECCTTCTTCEEEEESCEEEEEE
T ss_pred             CEEEEEccCCEEEEEccccCCcEEEEEcccceEEe
Confidence            8999999999999998543  2344 456665553

>1k4z_A CAP, adenylyl cyclase-associated protein; right-handed parallel beta-helix, intertwined dimer; 2.30A {Saccharomyces cerevisiae} SCOP: b.80.5.1 PDB: 1kq5_A

Probab=97.69  E-value=5.1e-05  Score=66.58  Aligned_cols=107  Identities=16%  Similarity=0.220  Sum_probs=85.3

Q ss_pred             CCCceecccCcE--EEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEE--E
Q 017913          190 DSPGFRDKQSQV--LVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVL--V  265 (364)
Q Consensus       190 ~~~~i~n~~~~~--i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivv--a  265 (364)
                      +.+.+.|..|..  ++... + -...+.|.+|.||+|.+.|.+.++.|++|++|.|++-.+=+++-+-+|.+..+-+  .
T Consensus        10 ~KW~VEn~~~~~~~v~~~~-~-~~qsV~I~~C~~s~I~IkGKvNsItld~C~k~~vv~ds~VSsvevinc~~v~vQv~g~   87 (159)
T 1k4z_A           10 NKWFIENYENETESLVIDA-N-KDESIFIGKCSQVLVQIKGKVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHS   87 (159)
T ss_dssp             TEEEEECCBSCSSCEEEEC-C-TTCEEEEEEEEEEEEEEESCBSEEEEEEEEEEEEEESCBSSCEEEEEEESEEEEESSC
T ss_pred             CEEEEEEeeCCCceEEEcc-c-cCcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecc
Confidence            346677776642  33322 2 2469999999999999999999999999999999999999999999999999988  5


Q ss_pred             eeeEEEcceeeeEEEEEccC--CCeE-eCCCcceee
Q 017913          266 SHQIRIHFAKRSDFYLRARS--RPII-EDSNEVRFA  298 (364)
Q Consensus       266 c~QlRiH~~~~~~~yl~~~S--~PII-EdC~~I~Fa  298 (364)
                      |..+-|..|.++.+||.-.|  .-|+ --|++|-..
T Consensus        88 vPtisIDktdg~~iYLSkesl~~ei~TSksS~mNv~  123 (159)
T 1k4z_A           88 LPQISIDKSDGGNIYLSKESLNTEIYTSCSTAINVN  123 (159)
T ss_dssp             CSEEEEESCEEEEEECCSTTTTCEEEEESCEEEEEE
T ss_pred             cCEEEEEccCCEEEEEChhhcCcEEEEEcccceeEE
Confidence            78999999999999996442  2355 345665553

>1k8f_A CAP, adenylyl cyclase-associated protein; actin bindin structural genomics, PSI, protein structure initiative; 2.80A {Homo sapiens} SCOP: b.80.5.1

Probab=93.42  E-value=0.26  Score=42.93  Aligned_cols=70  Identities=14%  Similarity=0.156  Sum_probs=51.6

Q ss_pred             ccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEe--eeEEEcceeeeEEEEEccCCCe-EeCCCcceee
Q 017913          229 SVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVS--HQIRIHFAKRSDFYLRARSRPI-IEDSNEVRFA  298 (364)
Q Consensus       229 ~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac--~QlRiH~~~~~~~yl~~~S~PI-IEdC~~I~Fa  298 (364)
                      .--+++|.+|.||+|.+--=--+|.|++|.+|.+++..  -.+.+-+|.++.+.+.-.-+-| |..|.|+++.
T Consensus        29 ~~qsV~I~~C~~s~I~IkGKvNsIsld~C~k~~vv~ds~VSsvevinc~~~~vQv~g~vPtisIDktdg~~iY  101 (157)
T 1k8f_A           29 LKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAY  101 (157)
T ss_dssp             TTCEEEEESCBSCEEEEEEEESEEEEESCEEEEEEEEEESSEEEEESCEEEEEEESSCCSEEEEESCEEEEEE
T ss_pred             cCcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecccCEEEEEccCCEEEE
Confidence            34578888888888776433456888888888888865  5888888888888776543333 5788888876

>2b0r_A Possible adenyl cyclase-associated protein; structural genomics consortium, SGC, unknown function; 2.60A {Cryptosporidium parvum}

Probab=91.23  E-value=0.45  Score=42.98  Aligned_cols=90  Identities=12%  Similarity=0.196  Sum_probs=64.2

Q ss_pred             CCceecccCcEEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEee--e
Q 017913          191 SPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSH--Q  268 (364)
Q Consensus       191 ~~~i~n~~~~~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac~--Q  268 (364)
                      ...|.+=.|.+|.+...   ...++|.+|.+|.|.+...++++-|-||.+..|-+--.-=+|.|+.|..|.|++.-.  .
T Consensus        74 sV~I~~C~nstI~IkGK---vNsItld~C~k~~vv~dsvVSsvEvinc~~v~vQV~G~vPTIsIDKtDg~qiYLSkeSl~  150 (202)
T 2b0r_A           74 KVSVRCSQNSRIIVEQK---VNSIFIENCVGCIFLVNGVISSIEIVNCDDIKLQMTGIVPTISLDKSNKVNIYTSKEGKN  150 (202)
T ss_dssp             EEEEEEEESCEEEECSC---BSEEEEEEEEEEEEEECCBSSEEEEESCEEEEEEESSCCCEEEEESCEEEEEECCGGGTT
T ss_pred             EEEEEeccceEEEEcCc---EEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecccCEEEEEccCCEEEEEcccccC
Confidence            34555666777776643   468889999999999988899999999999888774444468999999999988622  3


Q ss_pred             EEEcceeeeEEEEEc
Q 017913          269 IRIHFAKRSDFYLRA  283 (364)
Q Consensus       269 lRiH~~~~~~~yl~~  283 (364)
                      ..+-.++.+.+-+.+
T Consensus       151 teIvTSKSSemNV~v  165 (202)
T 2b0r_A          151 VEVYSSKSSEMNLLF  165 (202)
T ss_dssp             CEEEEESCEEEEEEE
T ss_pred             cEEEEecccceeEec
Confidence            445555555555444

>1k4z_A CAP, adenylyl cyclase-associated protein; right-handed parallel beta-helix, intertwined dimer; 2.30A {Saccharomyces cerevisiae} SCOP: b.80.5.1 PDB: 1kq5_A

Probab=89.67  E-value=0.63  Score=40.58  Aligned_cols=91  Identities=15%  Similarity=0.147  Sum_probs=66.9

Q ss_pred             CCceecccCcEEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEee--e
Q 017913          191 SPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSH--Q  268 (364)
Q Consensus       191 ~~~i~n~~~~~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac~--Q  268 (364)
                      +..|.+=.|.+|.....   ...++|.+|++|.|.+..-++++-+-||.+..|-+--.-=+|.|+.|.+|.+++.-.  +
T Consensus        33 sV~I~~C~~s~I~IkGK---vNsItld~C~k~~vv~ds~VSsvevinc~~v~vQv~g~vPtisIDktdg~~iYLSkesl~  109 (159)
T 1k4z_A           33 SIFIGKCSQVLVQIKGK---VNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLPQISIDKSDGGNIYLSKESLN  109 (159)
T ss_dssp             EEEEEEEEEEEEEEESC---BSEEEEEEEEEEEEEESCBSSCEEEEEEESEEEEESSCCSEEEEESCEEEEEECCSTTTT
T ss_pred             EEEEEeccceEEEEcCc---EEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecccCEEEEEccCCEEEEEChhhcC
Confidence            34555566677776643   468999999999999999999999999999998774444568999999999998532  4


Q ss_pred             EEEcceeeeEEEEEcc
Q 017913          269 IRIHFAKRSDFYLRAR  284 (364)
Q Consensus       269 lRiH~~~~~~~yl~~~  284 (364)
                      -.+-.++.+.+-+.+.
T Consensus       110 ~ei~TSksS~mNv~vp  125 (159)
T 1k4z_A          110 TEIYTSCSTAINVNLP  125 (159)
T ss_dssp             CEEEEESCEEEEEEES
T ss_pred             cEEEEEcccceeEEec
Confidence            4455555555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	364
d1k8fa_	157	C-terminal domain of adenylylcyclase associated pr	97.78
d1k4za_	157	C-terminal domain of adenylylcyclase associated pr	97.67
d1k8fa_	157	C-terminal domain of adenylylcyclase associated pr	94.42
d1k4za_	157	C-terminal domain of adenylylcyclase associated pr	94.18

>d1k8fa_ b.80.5.1 (A:) C-terminal domain of adenylylcyclase associated protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: C-terminal domain of adenylylcyclase associated protein
family: C-terminal domain of adenylylcyclase associated protein
domain: C-terminal domain of adenylylcyclase associated protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=2.8e-05  Score=65.95  Aligned_cols=106  Identities=15%  Similarity=0.165  Sum_probs=85.5

Q ss_pred             CCceecccCcE-EEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEE--Eee
Q 017913          191 SPGFRDKQSQV-LVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVL--VSH  267 (364)
Q Consensus       191 ~~~i~n~~~~~-i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivv--ac~  267 (364)
                      .+.+.|..|.. |++...+. ...+.|.+|.||+|.+.|.+.++.|++|++|.+++-.+=+++-+-+|.+..+-+  .+.
T Consensus        10 kW~VEn~~~~~~lvi~~~~~-~qsV~I~~C~n~~i~IkgKvNsisid~C~k~~vv~dsvVs~vevvnc~~~~vQv~g~vP   88 (157)
T d1k8fa_          10 KWRVENQENVSNLVIEDTEL-KQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVP   88 (157)
T ss_dssp             EEEEESCBSCCCEEECCCCT-TCEEEEESCBSCEEEEEEEESEEEEESCEEEEEEEEEESSEEEEESCEEEEEEESSCCS
T ss_pred             EEEEEeccCCCccEEEcccc-ccEEEEEcccceEEEEcceEEEEEEeccceeEEEEcceEeEEEEEecCcEEEEEeccCC
Confidence            46667765543 55543332 369999999999999999999999999999999999999999999999999888  578


Q ss_pred             eEEEcceeeeEEEEEccC--CCeE-eCCCccee
Q 017913          268 QIRIHFAKRSDFYLRARS--RPII-EDSNEVRF  297 (364)
Q Consensus       268 QlRiH~~~~~~~yl~~~S--~PII-EdC~~I~F  297 (364)
                      .+-|..|.+|.+||.-.+  ..|+ --|++|-.
T Consensus        89 tIsIDktdg~~iYLskesl~teI~TskSSemNV  121 (157)
T d1k8fa_          89 TISINKTDGCHAYLSKNSLDCEIVSAKSSEMNV  121 (157)
T ss_dssp             EEEEESCEEEEEECCTTCTTCEEEEESCEEEEE
T ss_pred             EEEEEccCCEEEEEcccccCcEEEEeccceeeE
Confidence            999999999999997654  3455 45555543

>d1k4za_ b.80.5.1 (A:) C-terminal domain of adenylylcyclase associated protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: C-terminal domain of adenylylcyclase associated protein
family: C-terminal domain of adenylylcyclase associated protein
domain: C-terminal domain of adenylylcyclase associated protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=2.7e-05  Score=66.06  Aligned_cols=106  Identities=14%  Similarity=0.155  Sum_probs=83.6

Q ss_pred             CCceecccC-cEEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEE--Eee
Q 017913          191 SPGFRDKQS-QVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVL--VSH  267 (364)
Q Consensus       191 ~~~i~n~~~-~~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivv--ac~  267 (364)
                      .+.+.|..| ..++....+. ...+.|.+|.||+|.+.|.+.++.|++|++|.+++-.+=|++-+-+|.+..+-+  .+.
T Consensus        11 kW~VEn~~~~~~~~~~~~~~-~qsV~I~~C~n~~i~IkGKvNsIsid~C~k~~vv~dsvVs~vEvinc~~~~vQV~g~vP   89 (157)
T d1k4za_          11 KWFIENYENETESLVIDANK-DESIFIGKCSQVLVQIKGKVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLP   89 (157)
T ss_dssp             EEEEECCBSCSSCEEEECCT-TCEEEEEEEEEEEEEEESCBSEEEEEEEEEEEEEESCBSSCEEEEEEESEEEEESSCCS
T ss_pred             EEEEEeeeCCCccEEEcccc-ccEEEEEcccceEEEEccEEEEEEEeccceeEEEEeceEeEEEEEecCcEEEEEeccCC
Confidence            355555544 2233332222 468999999999999999999999999999999999999999999999999988  578


Q ss_pred             eEEEcceeeeEEEEEccC--CCeE-eCCCccee
Q 017913          268 QIRIHFAKRSDFYLRARS--RPII-EDSNEVRF  297 (364)
Q Consensus       268 QlRiH~~~~~~~yl~~~S--~PII-EdC~~I~F  297 (364)
                      .+-|..|.++.+||.-.+  ..|+ --|++|-.
T Consensus        90 tisIDktdg~~iYLskesl~~eI~TsksSemNV  122 (157)
T d1k4za_          90 QISIDKSDGGNIYLSKESLNTEIYTSCSTAINV  122 (157)
T ss_dssp             EEEEESCEEEEEECCSTTTTCEEEEESCEEEEE
T ss_pred             EEEEEccCCEEEEEchhhcCcEEEEeccceeEE
Confidence            999999999999997654  3455 45666553

>d1k8fa_ b.80.5.1 (A:) C-terminal domain of adenylylcyclase associated protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: C-terminal domain of adenylylcyclase associated protein
family: C-terminal domain of adenylylcyclase associated protein
domain: C-terminal domain of adenylylcyclase associated protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.062  Score=44.81  Aligned_cols=70  Identities=14%  Similarity=0.155  Sum_probs=55.6

Q ss_pred             cceEEEecccCcEEEEeeccceEEEEecCCcEEEEEe--eeEEEcceeeeEEEEEccCCCe-EeCCCcceeec
Q 017913          230 VNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVS--HQIRIHFAKRSDFYLRARSRPI-IEDSNEVRFAP  299 (364)
Q Consensus       230 ~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac--~QlRiH~~~~~~~yl~~~S~PI-IEdC~~I~Fap  299 (364)
                      -.+++|.+|.||+|.+--=-.+|.|++|.+|.+++..  -.+.+-+|.++.+.+.-.-+-| |..|.|+++.=
T Consensus        30 ~qsV~I~~C~n~~i~IkgKvNsisid~C~k~~vv~dsvVs~vevvnc~~~~vQv~g~vPtIsIDktdg~~iYL  102 (157)
T d1k8fa_          30 KQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYL  102 (157)
T ss_dssp             TCEEEEESCBSCEEEEEEEESEEEEESCEEEEEEEEEESSEEEEESCEEEEEEESSCCSEEEEESCEEEEEEC
T ss_pred             ccEEEEEcccceEEEEcceEEEEEEeccceeEEEEcceEeEEEEEecCcEEEEEeccCCEEEEEccCCEEEEE
Confidence            3589999999999988544567999999999999876  5889999999998875433333 58899988864

>d1k4za_ b.80.5.1 (A:) C-terminal domain of adenylylcyclase associated protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: C-terminal domain of adenylylcyclase associated protein
family: C-terminal domain of adenylylcyclase associated protein
domain: C-terminal domain of adenylylcyclase associated protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.18  E-value=0.04  Score=46.03  Aligned_cols=71  Identities=18%  Similarity=0.248  Sum_probs=55.8

Q ss_pred             ccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEe--eeEEEcceeeeEEEEEccCCCe-EeCCCcceeec
Q 017913          229 SVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVS--HQIRIHFAKRSDFYLRARSRPI-IEDSNEVRFAP  299 (364)
Q Consensus       229 ~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac--~QlRiH~~~~~~~yl~~~S~PI-IEdC~~I~Fap  299 (364)
                      .-.+++|.+|.||+|.+--=-.+|.|++|.+|.+++..  -.+.+-+|.++.+.+.-.-+-| |+.|.|+.+.=
T Consensus        30 ~~qsV~I~~C~n~~i~IkGKvNsIsid~C~k~~vv~dsvVs~vEvinc~~~~vQV~g~vPtisIDktdg~~iYL  103 (157)
T d1k4za_          30 KDESIFIGKCSQVLVQIKGKVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLPQISIDKSDGGNIYL  103 (157)
T ss_dssp             TTCEEEEEEEEEEEEEEESCBSEEEEEEEEEEEEEESCBSSCEEEEEEESEEEEESSCCSEEEEESCEEEEEEC
T ss_pred             cccEEEEEcccceEEEEccEEEEEEEeccceeEEEEeceEeEEEEEecCcEEEEEeccCCEEEEEccCCEEEEE
Confidence            34589999999999988555578999999999999865  5888999999988875433333 58888888864