Citrus Sinensis ID: 017924
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 363 | 2.2.26 [Sep-21-2011] | |||||||
| P54120 | 353 | Protein AIG1 OS=Arabidops | no | no | 0.774 | 0.796 | 0.476 | 6e-63 | |
| O81025 | 463 | Putative protein PHLOEM P | no | no | 0.787 | 0.617 | 0.434 | 2e-58 | |
| Q9NUV9 | 329 | GTPase IMAP family member | yes | no | 0.716 | 0.790 | 0.329 | 7e-38 | |
| Q8K3K9 | 310 | GTPase IMAP family member | yes | no | 0.542 | 0.635 | 0.403 | 7e-33 | |
| Q8NHV1 | 300 | GTPase IMAP family member | no | no | 0.573 | 0.693 | 0.336 | 8e-28 | |
| Q99JY3 | 219 | GTPase IMAP family member | no | no | 0.506 | 0.840 | 0.373 | 1e-27 | |
| Q8WWP7 | 306 | GTPase IMAP family member | no | no | 0.553 | 0.656 | 0.347 | 6e-27 | |
| Q75N62 | 688 | GTPase IMAP family member | no | no | 0.495 | 0.261 | 0.4 | 8e-26 | |
| Q8ND71 | 665 | GTPase IMAP family member | no | no | 0.531 | 0.290 | 0.379 | 4e-25 | |
| Q8BWF2 | 308 | GTPase IMAP family member | no | no | 0.531 | 0.626 | 0.35 | 5e-24 |
| >sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 241 bits (615), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 140/294 (47%), Positives = 191/294 (64%), Gaps = 13/294 (4%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
+VL+GRTGNGKSATGNSI+ K FK+ SSGVT C V +G ++NVIDTPGLF
Sbjct: 44 NIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLF 103
Query: 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140
DLS +EF+GKEIVKCL +A G+HA L+V SV R SQEEE + L LFG + DY+
Sbjct: 104 DLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYL 163
Query: 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQL 200
IVVFTGGD LED TLED+LG P LK +L LC R +LFDNKTKD+ K T+QV +L
Sbjct: 164 IVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTKDDEKKTKQVHEL 223
Query: 201 LSLVNSVIVQNGGQPYTDELKRGATELRDK-KAEVDSL--KEYSKREISKLMGQMQESYE 257
L L++ V QN PYTDE+ E ++ K E + L K +S+ +++ LM ++Q E
Sbjct: 224 LKLIDLVRKQNNNIPYTDEMYHMIKEENERHKKEQEELESKGHSEEQLAALMKELQIMNE 283
Query: 258 DRIKRMAEMVESGLK---ETTTRLEQQLAKEQAARLRAEEVAQLAEMKLKDEIQ 308
+K MAEM+E +K E +L +Q R +A+E++ +M+++++++
Sbjct: 284 RNLKAMAEMMEKNMKIAMEAQEKLFEQ-------REKAQEMSYQQKMEMQEKLK 330
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (577), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/290 (43%), Positives = 186/290 (64%), Gaps = 4/290 (1%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
+ +VL+GRTGNGKS+TGN++LG K FK+ + GVT CEM ++DG ++NVIDTPGL
Sbjct: 6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65
Query: 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
D + + EI+ CL MA++GIHA L+V S R S+EEE+ V+ L +FG + DY
Sbjct: 66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125
Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
IVVFTGGDDLE+ ++TL+D+ CP+ L ++L+LC R VLFDNK+KDE K EQV+Q
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185
Query: 200 LLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDR 259
LL+ V +V Q GG PYT +L R E D++ + SK + +MQ++
Sbjct: 186 LLARVENVGEQTGGIPYTYQLHRKIKEENDERLREEERVIESKNRAEAELAEMQQNLLME 245
Query: 260 IKRMAEMVESGLKETTTRLE--QQLAKEQAARLRAE-EVAQLAEMKLKDE 306
+++ +M E+ K+ + E ++L +++ A+ RAE E+A + KL+ E
Sbjct: 246 KEKL-QMEEAKNKQLIAQAEANEKLMEQERAKNRAETELAAVMVEKLQME 294
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 166/276 (60%), Gaps = 16/276 (5%)
Query: 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI 74
P N + +VL+G+TG GKSATGNSILGRK F + + +TK CE +++ K+ ++V V+
Sbjct: 26 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 84
Query: 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK 134
DTPG+FD + KEI++C+ + G HA L+V + R+++EE A ++ +FG+
Sbjct: 85 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGE 143
Query: 135 NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGT 194
+MI++FT DDL D L D+L E P+ +++++ + +R +NK A G
Sbjct: 144 RARSFMILIFTRKDDLGD--TNLHDYL-REAPEDIQDLMDIFGDRYCALNNK----ATGA 196
Query: 195 E---QVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQ 251
E Q QLL L+ V+ +N YT+ + + A E + + + +++E + E+ + +
Sbjct: 197 EQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEE--EIQKQTQAMQELHRVELEREKAR 254
Query: 252 MQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQA 287
++E YE++I+++ + VE ++ ++E++LA+++A
Sbjct: 255 IREEYEEKIRKLEDKVEQ--EKRKKQMEKKLAEQEA 288
|
May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium. Homo sapiens (taxid: 9606) |
| >sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 141 bits (356), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 125/203 (61%), Gaps = 6/203 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
+VLLG+TG GKS+TGNSILGRKAF + + +TK CE K + DG+ + V+DTPG+FD
Sbjct: 33 IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGIFD 91
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
KEI +C+ + G HA L+V + ++ EE A +L ++F K +MI
Sbjct: 92 TEVPDADTQKEITRCVALTSPGPHALLLVIPL-GCYTVEEHKATRKLLSMFEKKARRFMI 150
Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
++ T DDLED + + ++L P+ L+E++ NR LF+NK A+ EQ RQLL
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-ETAPEVLQELIYEFRNRYCLFNNKASG-AEQEEQKRQLL 206
Query: 202 SLVNSVIVQNGGQPYTDELKRGA 224
+LV S++ +NGG+ +T+++ A
Sbjct: 207 TLVQSMVRENGGKYFTNKMYESA 229
|
May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium. Rattus norvegicus (taxid: 10116) |
| >sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 126/214 (58%), Gaps = 6/214 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
+VL+G+TG+GKSAT N+ILG + F + + VTK C+ K + G+ + V+DTPGLFD
Sbjct: 11 IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQ-KASREWQGRDLLVVDTPGLFD 69
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
+ KEI +C+ + G HA ++V + R+++EE+ V + +FGK+ +M+
Sbjct: 70 TKESLDTTCKEISRCIISSCPGPHAIVLVL-LLGRYTEEEQKTVALIKAVFGKSAMKHMV 128
Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK-DEAKGTEQVRQL 200
++FT ++LE ++ DF+ + LK I++ C NRC F N K +A+ QV++L
Sbjct: 129 ILFTRKEELEG--QSFHDFIA-DADVGLKSIVKECGNRCCAFSNSKKTSKAEKESQVQEL 185
Query: 201 LSLVNSVIVQNGGQPYTDELKRGATELRDKKAEV 234
+ L+ ++ N G ++D++ + E ++ EV
Sbjct: 186 VELIEKMVQCNEGAYFSDDIYKDTEERLKQREEV 219
|
Homo sapiens (taxid: 9606) |
| >sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 113/190 (59%), Gaps = 6/190 (3%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
+VLLG+TG GKS+TGNSILG K F + + +TK CE + + DG+ + V+DTPG+FD
Sbjct: 33 IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCEKRVSTW-DGKELVVVDTPGIFD 91
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
+EI + + + G HA L+V + R++ EE A ++ ++FGK +MI
Sbjct: 92 TEVPDADTQREITRYVALTSPGPHALLLVVPL-GRYTVEEHKATQKILDMFGKQARRFMI 150
Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
++ T DDLED + + ++L + PK +E++ NR LF+N+ A+ EQ QLL
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-EKAPKFFQEVMHEFQNRYCLFNNRASG-AEKEEQKMQLL 206
Query: 202 SLVNSVIVQN 211
+LV S+ + +
Sbjct: 207 TLVQSMFLSS 216
|
Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis. Mus musculus (taxid: 10090) |
| >sp|Q8WWP7|GIMA1_HUMAN GTPase IMAP family member 1 OS=Homo sapiens GN=GIMAP1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 123/213 (57%), Gaps = 12/213 (5%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
R ++L+GRTG GKSATGNSILG++ F + G++ VT+ C + D V V+DTP +
Sbjct: 28 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDI 86
Query: 80 FDLSAGSEFVG-KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
F G +E C ++ G HA L+V + RF+ +++ AV ++ ++FG++V
Sbjct: 87 FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLK 145
Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE--- 195
+M++VFT +DL +L D++ + + L+E++ C R FDN+ A G E
Sbjct: 146 WMVIVFTRKEDLAG--GSLHDYVSNTENRALRELVAECGGRVCAFDNR----ATGREQEA 199
Query: 196 QVRQLLSLVNSVIVQNGGQPYTDELKRGATELR 228
QV QLL +V +++++ G Y++E+ A LR
Sbjct: 200 QVEQLLGMVEGLVLEHKGAHYSNEVYELAQVLR 232
|
May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells. Homo sapiens (taxid: 9606) |
| >sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 114/190 (60%), Gaps = 10/190 (5%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
++LLGR+G GKSATGN+ILGR AF + + VT + + L D Q V V+DTP F
Sbjct: 478 IILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTL-DWQDVVVVDTPS-FI 535
Query: 82 LSAGSE----FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF 137
+ G+E + +EI CL + ++G+ F++V + RF+QE+E V +L F +N+
Sbjct: 536 QTPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQL-GRFTQEDEVVVEQLEASFEENIM 594
Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQV 197
YMIV+FT +DL D + L D+ + K LK+IL+ C+ R F+NK E + T QV
Sbjct: 595 KYMIVLFTRKEDLGDGD--LHDYTNNTKNKALKKILKKCNGRVCAFNNKETGEDQET-QV 651
Query: 198 RQLLSLVNSV 207
+ LL + NS+
Sbjct: 652 KGLLKIANSL 661
|
Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections. Mus musculus (taxid: 10090) |
| >sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 117/203 (57%), Gaps = 10/203 (4%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG--- 78
+VL+GR+G GKSATGNSILG F + + VTKT + DGQ V V+DTP
Sbjct: 441 IVLVGRSGTGKSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTW-DGQEVVVVDTPSFNQ 499
Query: 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
+ D+ + +E+ +CL + G F++VF + RF++E++TAV +L +FG +
Sbjct: 500 MLDVEKDPSRLEEEVKRCLSCCEKGDTFFVLVFQL-GRFTEEDKTAVAKLEAIFGADFTK 558
Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVR 198
Y I++FT +DL LEDF+ + K L+ I + C R F+NK +A+ T QV+
Sbjct: 559 YAIMLFTRKEDL--GAGNLEDFMKNSDNKALRRIFKKCGRRVCAFNNKETGQAQET-QVK 615
Query: 199 QLLSLVNSVIVQNG--GQPYTDE 219
LL+ VN + ++G G P+T E
Sbjct: 616 ALLTKVNDLRKESGWSGYPHTQE 638
|
Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections. Homo sapiens (taxid: 9606) |
| >sp|Q8BWF2|GIMA5_MOUSE GTPase IMAP family member 5 OS=Mus musculus GN=Gimap5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 120/200 (60%), Gaps = 7/200 (3%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+G++G GKSATGNSIL R AF++ VT+T + +T +G+ + V+DTP +F+
Sbjct: 29 ILLVGKSGCGKSATGNSILRRPAFQSRLRGQSVTRTSQAETGTW-EGRSILVVDTPPIFE 87
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
A ++ + K+I C + G H L+V + RF+ E+ AV + +FG V +MI
Sbjct: 88 SKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQL-GRFTAEDAMAVRMVKEVFGVGVMRHMI 146
Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK-DEAKGTEQVRQL 200
V+FT +DLE EK+LE+F+ H + L+ + Q C R F+N+ +E +G Q+ +L
Sbjct: 147 VLFTRKEDLE--EKSLEEFVTHTDNRSLRSLTQECGRRYCAFNNRASGEEQQG--QLAEL 202
Query: 201 LSLVNSVIVQNGGQPYTDEL 220
++LV + + G ++++L
Sbjct: 203 MALVRRLEQECEGSFHSNDL 222
|
Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 363 | ||||||
| 255539412 | 339 | aig1, putative [Ricinus communis] gi|223 | 0.895 | 0.958 | 0.679 | 1e-125 | |
| 296089429 | 345 | unnamed protein product [Vitis vinifera] | 0.895 | 0.942 | 0.652 | 1e-122 | |
| 225460273 | 340 | PREDICTED: protein AIG1 [Vitis vinifera] | 0.895 | 0.955 | 0.652 | 1e-122 | |
| 356526433 | 350 | PREDICTED: protein AIG1-like [Glycine ma | 0.834 | 0.865 | 0.674 | 1e-117 | |
| 363814318 | 336 | uncharacterized protein LOC100807910 [Gl | 0.848 | 0.916 | 0.666 | 1e-117 | |
| 224146305 | 335 | predicted protein [Populus trichocarpa] | 0.848 | 0.919 | 0.664 | 1e-116 | |
| 449464872 | 341 | PREDICTED: protein AIG1-like [Cucumis sa | 0.848 | 0.903 | 0.658 | 1e-110 | |
| 388500386 | 335 | unknown [Lotus japonicus] | 0.892 | 0.967 | 0.592 | 1e-106 | |
| 4097585 | 344 | NTGP4, partial [Nicotiana tabacum] | 0.842 | 0.889 | 0.612 | 1e-106 | |
| 357470409 | 346 | AIG1 [Medicago truncatula] gi|355506544| | 0.848 | 0.890 | 0.629 | 1e-104 |
| >gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/334 (67%), Positives = 265/334 (79%), Gaps = 9/334 (2%)
Query: 1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
MG +D DW+ TSPSNG RTVVL+GRTGNGKSATGNS+LGRKAFK+ A SSGVT TCE+
Sbjct: 1 MGGSAIDDDWELTSPSNGVRTVVLVGRTGNGKSATGNSLLGRKAFKSRASSSGVTSTCEL 60
Query: 61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
+ TV+ DGQV+NV+DTPGLFD SA SEFVGKEIVKC+ MAKDGIHA LVVFSV RFSQE
Sbjct: 61 QQTVITDGQVINVVDTPGLFDFSAESEFVGKEIVKCINMAKDGIHAVLVVFSVRTRFSQE 120
Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
EE A+ L LFG +FDYMIVVFTGGD+LED+++TLED+LG ECP+PL+EIL LC NR
Sbjct: 121 EEAALRSLQTLFGSKIFDYMIVVFTGGDELEDNDETLEDYLGRECPQPLQEILTLCKNRL 180
Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
VLFDNKTKDE K EQV QLLSLVN VI +NGGQPYTD ELK A +LRD++ EVDS
Sbjct: 181 VLFDNKTKDEFKRAEQVHQLLSLVNLVIAENGGQPYTDELFVELKARAIKLRDQQEEVDS 240
Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVA 296
LK YSK EI +L QM SYE+++KR+ EMVE L+ETT RLEQQLA+EQAARL+AEE A
Sbjct: 241 LKGYSKGEILELKEQMHRSYEEQLKRITEMVELKLRETTNRLEQQLAEEQAARLKAEEKA 300
Query: 297 QLAEMKLKDEIQS-----RSTEKETAEPPKPSEN 325
QLA+MK DEI+ +KET E + +E+
Sbjct: 301 QLAQMKSNDEIRQLRENLERAQKETQELRRQAES 334
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/334 (65%), Positives = 271/334 (81%), Gaps = 9/334 (2%)
Query: 1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
MG +D +W+ T+PS+G RT+VL+GRTGNGKSATGNSILGRK+FK+ A SSGVT TCE+
Sbjct: 6 MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 65
Query: 61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
+ T+L+DGQ+VNVIDTPGLFDLSA S+FVGKEIVKC+ +AKDG+HA LVVFSV RFS+E
Sbjct: 66 QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 125
Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
EE A+H L LFG + DYMIVVFTGGD+LED+++TLED+LG ECP+PLK+ L LC NR
Sbjct: 126 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 185
Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
VLFDNKTKDEAK EQV++LLSLVNSVI+QNGGQPYTD ELK+GA +LRD+ EVDS
Sbjct: 186 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDS 245
Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVA 296
L+ YSKREI L QM +SYE+++KR+ EMVE L+ETT +LE+QLA+EQAARL+AEE+A
Sbjct: 246 LEGYSKREILVLKEQMHKSYEEQLKRITEMVEVKLRETTMKLERQLAEEQAARLKAEEIA 305
Query: 297 QLAEMKLKDEIQS-----RSTEKETAEPPKPSEN 325
Q A++ DEI+ ++ET E K +E+
Sbjct: 306 QRAQLASNDEIRKLRENLERAQRETEELRKRAES 339
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/334 (65%), Positives = 271/334 (81%), Gaps = 9/334 (2%)
Query: 1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
MG +D +W+ T+PS+G RT+VL+GRTGNGKSATGNSILGRK+FK+ A SSGVT TCE+
Sbjct: 1 MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60
Query: 61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
+ T+L+DGQ+VNVIDTPGLFDLSA S+FVGKEIVKC+ +AKDG+HA LVVFSV RFS+E
Sbjct: 61 QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120
Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
EE A+H L LFG + DYMIVVFTGGD+LED+++TLED+LG ECP+PLK+ L LC NR
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 180
Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
VLFDNKTKDEAK EQV++LLSLVNSVI+QNGGQPYTD ELK+GA +LRD+ EVDS
Sbjct: 181 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDS 240
Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVA 296
L+ YSKREI L QM +SYE+++KR+ EMVE L+ETT +LE+QLA+EQAARL+AEE+A
Sbjct: 241 LEGYSKREILVLKEQMHKSYEEQLKRITEMVEVKLRETTMKLERQLAEEQAARLKAEEIA 300
Query: 297 QLAEMKLKDEIQS-----RSTEKETAEPPKPSEN 325
Q A++ DEI+ ++ET E K +E+
Sbjct: 301 QRAQLASNDEIRKLRENLERAQRETEELRKRAES 334
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/307 (67%), Positives = 255/307 (83%), Gaps = 4/307 (1%)
Query: 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
+D DW+ TS SN RTVVL+GRTGNGKSATGN+ILGRKAFK+ A SS V+ +CE+KTT L
Sbjct: 20 IDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTEL 79
Query: 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
+GQ+VNVIDTPGLFDLSAGSEFVGKEIVKC+ +AKDGIHA +VVFSV RF++EEETA+
Sbjct: 80 NNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETAL 139
Query: 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
L LFG + DYMIVVFTGGD+LE++++TLED+LG ECP+PLKEIL LC+NRCVLFDN
Sbjct: 140 RSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLKEILVLCENRCVLFDN 199
Query: 186 KTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE----LKRGATELRDKKAEVDSLKEYS 241
KTKDE K QV+QLLS VN V+ +NGG+PYTDE LK+GA EL +++ EVDSLK YS
Sbjct: 200 KTKDEGKRFGQVQQLLSFVNMVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDSLKGYS 259
Query: 242 KREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVAQLAEM 301
K EI + QMQ++Y++++KR+ EMVES L+E T RLE+QLA+EQAARL+AEE A LA+M
Sbjct: 260 KGEILEFKKQMQQTYDEQLKRITEMVESKLREATMRLEEQLAEEQAARLKAEENAMLAQM 319
Query: 302 KLKDEIQ 308
+ DEI+
Sbjct: 320 RSDDEIR 326
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/312 (66%), Positives = 253/312 (81%), Gaps = 4/312 (1%)
Query: 1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
MG + DW+ TS SN RTVVL+GRTGNGKSATGN+ILGRK FK+ A SS V+ +CE+
Sbjct: 1 MGGSSIGDDWELTSSSNEGRTVVLVGRTGNGKSATGNTILGRKVFKSRASSSAVSTSCEL 60
Query: 61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
+TT L DGQ+VNVIDTPGLFDLS GSEFVGKEIVKC+ +AKDGIHA +VVFSV RF++E
Sbjct: 61 QTTELNDGQIVNVIDTPGLFDLSVGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEE 120
Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
EETA+ L LFG + DYMIVVFTGGD+LE++ +TLED+LG ECP+PLKEIL LCDNRC
Sbjct: 121 EETALRSLQTLFGSKIVDYMIVVFTGGDELEENAETLEDYLGRECPEPLKEILVLCDNRC 180
Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE----LKRGATELRDKKAEVDS 236
VLFDNKTKDE K QV+QLLS VN+V+ +NGG+PYTDE LK+GA EL +++ EVDS
Sbjct: 181 VLFDNKTKDEGKRFGQVQQLLSFVNTVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDS 240
Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVA 296
LK YSK EI K QMQ++Y+D++KR+ E+VES L+E T RLEQQL +EQAARL+AEE A
Sbjct: 241 LKGYSKGEILKFKKQMQQTYDDQLKRITEIVESKLREATMRLEQQLVEEQAARLKAEENA 300
Query: 297 QLAEMKLKDEIQ 308
LA+M+ DEI+
Sbjct: 301 MLAQMRSDDEIR 312
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/313 (66%), Positives = 252/313 (80%), Gaps = 5/313 (1%)
Query: 1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
MG +D DW+ SPSNG RT+VL+GRTGNGKSATGNSILGRKAFK+ A SSGVT +CE+
Sbjct: 1 MGGSAMDDDWEFASPSNGVRTIVLVGRTGNGKSATGNSILGRKAFKSRASSSGVTSSCEL 60
Query: 61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
+ TVL+DGQ++NVIDTPGLFD SAGSEFVG+EIVKC+ MAKDGIHA LVVFSV RFSQE
Sbjct: 61 QRTVLRDGQIINVIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQE 120
Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
EE A+ L LFG + DYMIVVFTGGD+LED+++TLED+LG ECP+PLKE+L LC+NR
Sbjct: 121 EEAALRSLQTLFGSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLTLCENRR 180
Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL----KRGATELRDKKAEVDS 236
VLF+NKTKD KG EQV++LLSLVN VI QNGGQPY+DEL ++G R ++ EVDS
Sbjct: 181 VLFNNKTKDVLKGVEQVQELLSLVNRVIEQNGGQPYSDELFAEIQKGEMNFRGQQEEVDS 240
Query: 237 LK-EYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEV 295
LK +S EIS+L QM+ YED++KR+ +MVE LKE T LE++LA+EQAARLRAEE
Sbjct: 241 LKGNFSIGEISELQEQMKRQYEDQLKRVTDMVEMKLKEATGNLERRLAEEQAARLRAEES 300
Query: 296 AQLAEMKLKDEIQ 308
AQL + K +EI+
Sbjct: 301 AQLEQRKSNEEIR 313
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/316 (65%), Positives = 255/316 (80%), Gaps = 8/316 (2%)
Query: 1 MGERVVDGDWKP--TSPSNGE--RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56
MG ++ DW+ TSP+NG RTVVL+GRTGNGKSATGNSILGRKAFK+ A SSGVT
Sbjct: 1 MGGSAIEEDWELDLTSPTNGRSARTVVLVGRTGNGKSATGNSILGRKAFKSRACSSGVTV 60
Query: 57 TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR 116
T E++TTVL DGQ ++VIDTPG+FD SAGS+FVGKEIVKC+ MAKDGIHA LVVFSV R
Sbjct: 61 TSELQTTVLSDGQEIDVIDTPGMFDFSAGSDFVGKEIVKCIDMAKDGIHAVLVVFSVRTR 120
Query: 117 FSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176
FS EEE A+ L LFG + +YMIVVFTGGD+LE++E+TLED+LG CP PLK+IL LC
Sbjct: 121 FSLEEEAALRSLQTLFGSKIVNYMIVVFTGGDELEENEETLEDYLGRSCPDPLKDILALC 180
Query: 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKA 232
NRCVLFDNKTKDE + QV+QLLSLVN +++QNGGQPY+D ELK GA +LRD++
Sbjct: 181 QNRCVLFDNKTKDEGRKVGQVQQLLSLVNGIVMQNGGQPYSDELFSELKAGAMKLRDQQK 240
Query: 233 EVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRA 292
EVDSL+ Y+++E+ +L QM SY++++KR+ EMVES L+ETT RLEQQLA+EQAARL+A
Sbjct: 241 EVDSLEGYTRQELKELKEQMHRSYDEQLKRITEMVESKLRETTMRLEQQLAEEQAARLKA 300
Query: 293 EEVAQLAEMKLKDEIQ 308
EE AQ A+ K DEI+
Sbjct: 301 EENAQHAQRKSNDEIR 316
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388500386|gb|AFK38259.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/331 (59%), Positives = 253/331 (76%), Gaps = 7/331 (2%)
Query: 1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
MG D DW+ TS +N RTVV +GRTGNGKSATGNSILG+K FK+ A S GVT +CE
Sbjct: 1 MGGNSFDEDWELTSSANEVRTVVSVGRTGNGKSATGNSILGKKVFKSRASSVGVTSSCES 60
Query: 61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
T L DGQ VNVIDTPGLFD+SAGS+FVGKEIV C+ +AKDGIHA +VVFSV RFSQE
Sbjct: 61 HTIEL-DGQTVNVIDTPGLFDISAGSDFVGKEIVNCINLAKDGIHAIIVVFSVRTRFSQE 119
Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
E TA+ L LFG ++DY +VVFTGGD+LE+ ++TLED+LG +CP+PLK++L LC+NR
Sbjct: 120 EATALRSLQTLFGDKIYDYTVVVFTGGDELEEEDQTLEDYLGCDCPEPLKDLLSLCENRR 179
Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
+LFDNKTKDE K +EQV+QL S VN V+ QNGG+PYTD ELK+GA +L +++++V+S
Sbjct: 180 LLFDNKTKDERKRSEQVQQLFSFVNMVLSQNGGRPYTDDLFAELKKGALKLHNQQSQVNS 239
Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVA 296
L+ +S +EI + Q +++Y+D++KR+AEMVES L++ T RLEQQLAKEQAARL+AEE A
Sbjct: 240 LEGHSNKEILEYKKQAKQAYDDQLKRIAEMVESKLRDATLRLEQQLAKEQAARLKAEENA 299
Query: 297 QLAEMKLKDEIQS--RSTEKETAEPPKPSEN 325
LA ++ EI+ + E+ E K EN
Sbjct: 300 NLARVRSDKEIRELRKHLERAHEELRKHGEN 330
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4097585|gb|AAD09518.1| NTGP4, partial [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/312 (61%), Positives = 247/312 (79%), Gaps = 6/312 (1%)
Query: 1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
MG + DW+ +NG RT+VL+GRTGNGKSATGNSILGRKAF++ + S+GVT TCE+
Sbjct: 6 MGGSAISDDWEF--AANGARTLVLVGRTGNGKSATGNSILGRKAFRSMSSSAGVTSTCEL 63
Query: 61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
+ TVL+DGQ+++VIDTPGLFD SA EF+G EIVKC+ MAKDGIHA LVV SV RFS+E
Sbjct: 64 QRTVLEDGQILDVIDTPGLFDFSAEPEFIGNEIVKCINMAKDGIHAVLVVLSVRTRFSRE 123
Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
E+ AV L FG + DYM++VFTGGDDLED+E+TLED+LG +CP+PLK+IL +C NR
Sbjct: 124 EQAAVQSLREFFGGKISDYMVLVFTGGDDLEDNEETLEDYLGRDCPEPLKDILAMCGNRR 183
Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDS 236
VLFDNK+KD K +Q++QLLSLVN V+ NGG+PYTD ELK+GA +LR++ EV++
Sbjct: 184 VLFDNKSKDHLKKADQLKQLLSLVNVVVENNGGKPYTDDLFKELKKGAIKLRNQATEVNN 243
Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVA 296
L YSK+EI +L QMQ+SYE++++R+ E+VES LK+TT RLE+QLAKEQAARL AE A
Sbjct: 244 LVGYSKQEILELKEQMQKSYEEQLRRITEVVESKLKDTTHRLEEQLAKEQAARLEAELSA 303
Query: 297 QLAEMKLKDEIQ 308
+ A+ K +EI+
Sbjct: 304 KEAQKKSDNEIR 315
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357470409|ref|XP_003605489.1| AIG1 [Medicago truncatula] gi|355506544|gb|AES87686.1| AIG1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 202/321 (62%), Positives = 251/321 (78%), Gaps = 13/321 (4%)
Query: 1 MGERVVDGDWKPTSP---------SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS 51
MG V+ DW+ S +N RTVVL+GRTGNGKSATGNSILG+K FK+ A S
Sbjct: 1 MGGSYVEDDWELASSGSASEVQISANEARTVVLVGRTGNGKSATGNSILGKKVFKSRASS 60
Query: 52 SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVF 111
SGVT +CEM+T L DGQ+VNVIDTPGLF++SAGSEF+GKEIVKC+ AKDGIHA LVV
Sbjct: 61 SGVTSSCEMQTAELSDGQIVNVIDTPGLFEVSAGSEFIGKEIVKCIDFAKDGIHAILVVL 120
Query: 112 SVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171
SV +RFS+EEE A+ L LFG + DYMIVVFTGGD+LED E TL+D+LG ECP+ LK+
Sbjct: 121 SVRSRFSEEEENALRSLQTLFGSKIVDYMIVVFTGGDELEDDEDTLDDYLGRECPESLKQ 180
Query: 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD----ELKRGATEL 227
IL LC NRCVLFDNKTKDE K + QV+QLLS VN +++QNGGQPYTD ELK+GA +L
Sbjct: 181 ILSLCGNRCVLFDNKTKDEKKRSGQVQQLLSFVNLIVLQNGGQPYTDELFAELKKGAMKL 240
Query: 228 RDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQA 287
++ +VDSL+ YS+ +IS+L MQ++YE+++K + EM+ES LKE TTRLE+QLA+EQA
Sbjct: 241 HREQRKVDSLEGYSEGQISELKKHMQQTYEEQLKHITEMIESKLKEATTRLEKQLAEEQA 300
Query: 288 ARLRAEEVAQLAEMKLKDEIQ 308
ARLRAE+ A+LA+ K DEI+
Sbjct: 301 ARLRAEDSAKLAQKKSDDEIR 321
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 363 | ||||||
| TAIR|locus:2009041 | 342 | AT1G33970 [Arabidopsis thalian | 0.867 | 0.921 | 0.544 | 3.2e-88 | |
| TAIR|locus:2203807 | 353 | AIG1 "AVRRPT2-INDUCED GENE 1" | 0.779 | 0.801 | 0.475 | 3.7e-64 | |
| TAIR|locus:2203817 | 311 | AT1G33950 [Arabidopsis thalian | 0.738 | 0.861 | 0.465 | 1.4e-62 | |
| TAIR|locus:2203832 | 336 | AT1G33930 [Arabidopsis thalian | 0.752 | 0.812 | 0.474 | 5.5e-61 | |
| TAIR|locus:2140558 | 394 | AT4G09940 [Arabidopsis thalian | 0.807 | 0.743 | 0.435 | 9e-61 | |
| TAIR|locus:2203797 | 326 | AT1G33900 [Arabidopsis thalian | 0.752 | 0.837 | 0.438 | 1.7e-59 | |
| TAIR|locus:2140568 | 336 | AT4G09950 [Arabidopsis thalian | 0.831 | 0.898 | 0.419 | 1.5e-58 | |
| TAIR|locus:2203802 | 334 | AT1G33890 [Arabidopsis thalian | 0.724 | 0.787 | 0.440 | 2.5e-58 | |
| TAIR|locus:2039528 | 463 | PP2-A3 "phloem protein 2-A3" [ | 0.787 | 0.617 | 0.437 | 4e-58 | |
| TAIR|locus:2203792 | 301 | AT1G33910 [Arabidopsis thalian | 0.719 | 0.867 | 0.447 | 3.7e-55 |
| TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
Identities = 177/325 (54%), Positives = 239/325 (73%)
Query: 1 MGERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60
MG +++ DW+ S SN +RT+VL+GRTGNGKSATGNSILGRKAF++ A + GVT TCE
Sbjct: 6 MGGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCES 65
Query: 61 KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120
+ V +DG ++NV+DTPGLFDLS ++F+GKEIV+C+ +A+DGIHA L+VFSV R ++E
Sbjct: 66 QRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISLAEDGIHAILLVFSV-RRLAEE 124
Query: 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180
E+T + L LFG + DYMIVVFTGGD+LE++E+TLE++L CP+ LKEIL +CDNR
Sbjct: 125 EQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEEYLADYCPEFLKEILGICDNRL 184
Query: 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL----KRGATELRDKKAEVDS 236
VLF+NKT D+ K EQV++LLSLV SV+ QN G+PY+DEL + A +LRD+K EV+
Sbjct: 185 VLFNNKTTDKVKKAEQVQKLLSLVESVVKQNNGKPYSDELFHELQEEAIKLRDQKKEVEL 244
Query: 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVA 296
L+ YS EI + Q+ SY+ ++ R+ EMVE+ L++T RLEQQL +EQAARL AE+ A
Sbjct: 245 LQGYSNNEIDEFKKQIDMSYDRQLSRITEMVETKLRDTAKRLEQQLGEEQAARLEAEKRA 304
Query: 297 QLAEMKLKDEIQS-----RSTEKET 316
+ + DEI+ EKET
Sbjct: 305 NEVQKRSSDEIKKLRENLERAEKET 329
|
|
| TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 138/290 (47%), Positives = 192/290 (66%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
+VL+GRTGNGKSATGNSI+ K FK+ SSGVT C V +G ++NVIDTPGLFD
Sbjct: 45 IVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLFD 104
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
LS +EF+GKEIVKCL +A G+HA L+V SV R SQEEE + L LFG + DY+I
Sbjct: 105 LSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYLI 164
Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
VVFTGGD LED TLED+LG P LK +L LC R +LFDNKTKD+ K T+QV +LL
Sbjct: 165 VVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTKDDEKKTKQVHELL 224
Query: 202 SLVNSVIVQNGGQPYTDELKRGATELRDK-KAEVDSL--KEYSKREISKLMGQMQESYED 258
L++ V QN PYTDE+ E ++ K E + L K +S+ +++ LM ++Q E
Sbjct: 225 KLIDLVRKQNNNIPYTDEMYHMIKEENERHKKEQEELESKGHSEEQLAALMKELQIMNER 284
Query: 259 RIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVAQLAEMKLKDEIQ 308
+K MAEM+E +K +++L ++ R +A+E++ +M+++++++
Sbjct: 285 NLKAMAEMMEKNMK-IAMEAQEKLFEQ---REKAQEMSYQQKMEMQEKLK 330
|
|
| TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 127/273 (46%), Positives = 182/273 (66%)
Query: 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVID 75
S +VL+GRTGNGKSATGNS++G+K F + A +SGVT C+ V KDG +NVID
Sbjct: 13 SKQAENIVLVGRTGNGKSATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKDGHKINVID 72
Query: 76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN 135
TPGLFDLS +E++ KEIV+CL +A+ GIHA L+V S R +QEEE + L LFG
Sbjct: 73 TPGLFDLSVSAEYISKEIVRCLTLAEGGIHAVLLVLSARTRITQEEENTLRTLQALFGSQ 132
Query: 136 VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE 195
+ DY++VVFTGGD LE+ ++TLED+LG +CP +KE++++ NR V+ DNKT DE K E
Sbjct: 133 ILDYVVVVFTGGDVLEECKETLEDYLGRDCPTFIKEVMRMSSNRKVVIDNKTHDEGKKAE 192
Query: 196 QVRQLLSLVNSVIVQNGGQPYTDE----LKRGATELRDKKAEVDSLKEYSKREISKLMGQ 251
QV +LLSLV+ + G+ YTD+ +K + +LR E++S K YS+ +++ Q
Sbjct: 193 QVHKLLSLVDDIRRSKCGEAYTDDTYHMIKEESEKLRKHHEELES-KNYSEECAAEMKNQ 251
Query: 252 MQESYEDRIKRMAEMVESGLKETTTRLEQQLAK 284
Y++ +K+M+E +E LK+ E+ L+K
Sbjct: 252 SLILYKENLKQMSEQLEKKLKDAAEAQEKALSK 284
|
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| TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 131/276 (47%), Positives = 178/276 (64%)
Query: 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ 69
W+ S S + VVL+GRTGNGKSATGNSI+GRK F++ + GVT C+ V DG
Sbjct: 26 WELPSASEPVKNVVLVGRTGNGKSATGNSIIGRKVFESKYQAVGVTTRCKTFRAVTPDGP 85
Query: 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP 129
++NVIDTPGLFDL+ +EF+ KEIV CL +A++G+HA ++V S++ R SQEEE A+ L
Sbjct: 86 IINVIDTPGLFDLAVSAEFISKEIVNCLILAREGLHAVVLVLSLSTRISQEEENALCTLQ 145
Query: 130 NLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKD 189
LFG + DY+IVVFT GD LED TLED+L + CP+ LK +L+LC R V+FDN+TKD
Sbjct: 146 MLFGGKIVDYLIVVFTCGDMLEDRNMTLEDYLSNGCPEFLKNVLRLCGGRRVVFDNRTKD 205
Query: 190 EAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATE--LRDKKAEVD-SLKEYSKREIS 246
E +QV+QLL V ++ + GG P+TD + R E R K+ E + K + E +
Sbjct: 206 EGVKAKQVQQLLVHVAAIEKETGGNPFTDTMHRRIQEEAARVKREEKEIEEKNIADEEKA 265
Query: 247 KLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQL 282
L Q+ SY + MA M+E KET E+Q+
Sbjct: 266 ALKKQLDMSYSQNMNMMALMMERIFKETAAANERQM 301
|
|
| TAIR|locus:2140558 AT4G09940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 131/301 (43%), Positives = 205/301 (68%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
RT++L+GR+GNGKSATGNSILGRKAFK+ +SGVT CE++++ L +GQ++NVIDTPGL
Sbjct: 48 RTLLLVGRSGNGKSATGNSILGRKAFKSKGRASGVTTACELQSSTLPNGQIINVIDTPGL 107
Query: 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
F LS +EF +EI++C + K+GI A L+VFS+ NR ++EE++A+ L LFG + DY
Sbjct: 108 FSLSPSTEFTCREILRCFSLTKEGIDAVLLVFSLKNRLTEEEKSALFALKILFGSKIVDY 167
Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDE-AKGTEQVR 198
MIVVFT D LED T E++L + P KEIL+ C++R VLF N++ ++ +QV+
Sbjct: 168 MIVVFTNEDSLEDDGDTFEEYL-EDSPD-FKEILEPCNDRKVLFRNRSNAPVSQKAKQVQ 225
Query: 199 QLLSLVNSVIVQNGGQPYTD---ELKRGATELRDKKAEVDSLKE-YSKREISKLMGQMQE 254
+LL+ V + NG D E++ T + K+ E+ +K Y+++E+ ++ M++
Sbjct: 226 ELLNYVEEIARLNGKSYMADLSHEIRENETAFQIKQQEILEMKGLYTRQEMLQMKKDMEK 285
Query: 255 SYEDR-IKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVAQLAEMKLKDEIQSRSTE 313
S+E++ +++M E VE+ L+ET RLEQQL +E++ARL E+ A+ E + D ++ + E
Sbjct: 286 SFENQQLRQMMERVETELRETKERLEQQLKEEKSARLELEKRAKEVEKRSSDVVKELNDE 345
Query: 314 K 314
+
Sbjct: 346 Q 346
|
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| TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 122/278 (43%), Positives = 183/278 (65%)
Query: 9 DWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG 68
D + S S + +VL+GRTGNGKSATGNS++G++ F++ ++GVT CE V G
Sbjct: 9 DLRLPSASEPIKNIVLVGRTGNGKSATGNSLIGKQVFRSETRATGVTMKCETCVAVTPCG 68
Query: 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128
+NVIDTPGLFDLS +E++ +EI+ CL +A+DG+HA ++V SV R SQEEE ++ L
Sbjct: 69 TGINVIDTPGLFDLSVSAEYLSQEIINCLVLAEDGLHAVVLVLSVRTRISQEEEATLNTL 128
Query: 129 PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK 188
+FG + DY++V+FTGGD+LE + TL+D+L CP+ LK +L+LC R +LFDN+T
Sbjct: 129 QVIFGSQIIDYLVVLFTGGDELEANNMTLDDYLSKGCPEFLKTVLRLCGGRRILFDNRTT 188
Query: 189 DEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRG----ATELRDKKAEVDSLKEYSKRE 244
DE K +QV++LL+ V ++ G P+TDE+ R A LR+++ EV+S K+ + E
Sbjct: 189 DEGKKVKQVQELLAHVAAIEKSTSGIPFTDEMHRKIQKEAETLREQQKEVES-KDLAAAE 247
Query: 245 ISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQL 282
I K Q ++ + MAEM+ + L+E + R E+ L
Sbjct: 248 IEKWKKHYQTEHDKNMNMMAEMLGNRLREDSERQEKML 285
|
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| TAIR|locus:2140568 AT4G09950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 135/322 (41%), Positives = 204/322 (63%)
Query: 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
V+ DWKP ERT+VLLGRTGNGKSATGNSILG+ F++ A +TK C++ + L
Sbjct: 10 VENDWKP------ERTLVLLGRTGNGKSATGNSILGKTMFQSKARGKFITKECKLHKSKL 63
Query: 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
+G +NVIDTPGLF S+ ++F +EIV+CL +AK GI A L+VFS+ NR ++EE++ +
Sbjct: 64 PNGLTINVIDTPGLFSASSTTDFTIREIVRCLLLAKGGIDAVLLVFSLRNRLTEEEQSTL 123
Query: 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
L LFG + DY+IVVFT D LE E TL+D+L +CP+ +EIL+ CD+R VLFDN
Sbjct: 124 RTLKILFGSQIVDYIIVVFTNEDALECGE-TLDDYL-EDCPE-FQEILEECDDRKVLFDN 180
Query: 186 K-TKDEAKGTEQVRQLLSLVNSVIVQNGGQPY----TDELKRGATELRDKKAEVDSLKEY 240
+K QV LL+LV + +N G+ Y + EL+ +++K+ +++ +K +
Sbjct: 181 SYNAPVSKKDRQVHDLLNLVEQISKKNNGKSYMADLSHELRENEATIKEKQKQIEEMKGW 240
Query: 241 S-KREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVAQLA 299
S K+EIS++ ++++S+ + ++ + E + + LKE+ +++QLAK QA R E+
Sbjct: 241 SSKQEISQMKKELEKSHNEMLEGIKEKISNQLKESLEDVKEQLAKAQAEREETEKKMNEI 300
Query: 300 EMKLKDEI-----QSRSTEKET 316
+ DEI Q EKET
Sbjct: 301 QKLSSDEIRRLREQLNKAEKET 322
|
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| TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 118/268 (44%), Positives = 179/268 (66%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
+ +VL+GRTGNGKSATGNS++G+ F + A ++GVTKTC+ V G +NVIDTPGL
Sbjct: 14 KNIVLVGRTGNGKSATGNSLIGKDVFVSEAKATGVTKTCQTYKAVTPGGSRINVIDTPGL 73
Query: 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
FDLS +EF+ KEI+ CL +A+ G+H ++V SV R +QEEE + L LFG + DY
Sbjct: 74 FDLSVSAEFISKEIINCLRLAEGGLHVVVLVLSVRTRITQEEENTLSTLQVLFGNEILDY 133
Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
+IV+FTGGD+LE + +TL+D+ CP LK +L LCD+R V+F+N TKD+ K EQV+Q
Sbjct: 134 LIVLFTGGDELEANNQTLDDYFHQGCPYFLKTVLGLCDDRKVMFNNMTKDKHKKVEQVQQ 193
Query: 200 LLSLVNSVIVQNGGQPYTD----ELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQES 255
L+LV V +N G+P+ E+K L+ +K V++ + E++K+ ++Q
Sbjct: 194 FLALVAKVEERNEGKPFRGKMYLEIKEETEWLKKQKKAVEA-SNLGEAELAKMKKELQME 252
Query: 256 YEDRIKRMAEMVESGLKETTTRLEQQLA 283
++ R+ +M +MV++ LKET+ E+ ++
Sbjct: 253 HDTRMSQMEDMVKNMLKETSAAHERMVS 280
|
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| TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 127/290 (43%), Positives = 184/290 (63%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
+ +VL+GRTGNGKS+TGN++LG K FK+ + GVT CEM ++DG ++NVIDTPGL
Sbjct: 6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65
Query: 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
D + + EI+ CL MA++GIHA L+V S R S+EEE+ V+ L +FG + DY
Sbjct: 66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125
Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
IVVFTGGDDLE+ ++TL+D+ CP+ L ++L+LC R VLFDNK+KDE K EQV+Q
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185
Query: 200 LLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDR 259
LL+ V +V Q GG PYT +L R E D++ + SK + +MQ++
Sbjct: 186 LLARVENVGEQTGGIPYTYQLHRKIKEENDERLREEERVIESKNRAEAELAEMQQNLLME 245
Query: 260 IKRMAEMVESGLKETTTRLE--QQLAKEQAARLRAE-EVAQLAEMKLKDE 306
K +M E+ K+ + E ++L +++ A+ RAE E+A + KL+ E
Sbjct: 246 -KEKLQMEEAKNKQLIAQAEANEKLMEQERAKNRAETELAAVMVEKLQME 294
|
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| TAIR|locus:2203792 AT1G33910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 123/275 (44%), Positives = 178/275 (64%)
Query: 15 PSNGE--RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVN 72
PS E R +VL+G TGNGKS+TGNS++G++ F KTC+ KT DGQ++N
Sbjct: 7 PSASEPVRNIVLVGPTGNGKSSTGNSLIGKEVFILETVEC---KTCKAKTL---DGQIIN 60
Query: 73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF 132
VIDTPGLFDLS ++++ KEI+ CL + G+HA ++V SV +EEE A+++L LF
Sbjct: 61 VIDTPGLFDLSVSTDYMNKEIINCLTLTDGGLHAVVLVLSVGTDILKEEEAALNKLQLLF 120
Query: 133 GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAK 192
G + DY++V+FTGGD LE KTL+D+L CP+ LK +L+LC R VLF+NKT DE K
Sbjct: 121 GSKIVDYLVVLFTGGDVLEKENKTLDDYLSRGCPEFLKTVLRLCGGRRVLFNNKTTDEVK 180
Query: 193 GTEQVRQLLSLVNSVIVQNGGQP-YTDEL----KRGATELRDKKAEVDSLKEYSKREISK 247
EQV+QLL+ V ++ NGG+ +T+E KR L +++ EV S K+ E+ +
Sbjct: 181 KIEQVKQLLAHVEAIENLNGGKALFTEENDLNEKRQGEMLMEQEMEVQS-KKPENTEVEE 239
Query: 248 LMGQMQESYEDRIKRMAEMVESGLKETTTRLEQQL 282
+ Q++ SY ++ MA+MVE LKE++ E+ L
Sbjct: 240 MKKQLEISYGQQMNMMAQMVEDTLKESSASHERML 274
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00021940001 | SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (340 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 363 | |||
| pfam04548 | 211 | pfam04548, AIG1, AIG1 family | 1e-96 | |
| cd01852 | 201 | cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1) | 1e-91 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 2e-11 | |
| cd01853 | 248 | cd01853, Toc34_like, Translocon at the Outer-envel | 2e-10 | |
| PRK00247 | 429 | PRK00247, PRK00247, putative inner membrane protei | 5e-08 | |
| cd00880 | 161 | cd00880, Era_like, E | 1e-07 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 3e-07 | |
| TIGR00993 | 763 | TIGR00993, 3a0901s04IAP86, chloroplast protein imp | 2e-06 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 7e-06 | |
| COG5373 | 931 | COG5373, COG5373, Predicted membrane protein [Func | 1e-05 | |
| COG5373 | 931 | COG5373, COG5373, Predicted membrane protein [Func | 1e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-05 | |
| PRK14952 | 584 | PRK14952, PRK14952, DNA polymerase III subunits ga | 2e-05 | |
| TIGR00991 | 313 | TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch | 7e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 1e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 1e-04 | |
| cd04148 | 219 | cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam | 1e-04 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 1e-04 | |
| pfam12526 | 115 | pfam12526, DUF3729, Protein of unknown function (D | 5e-04 | |
| COG0370 | 653 | COG0370, FeoB, Fe2+ transport system protein B [In | 6e-04 | |
| PRK14948 | 620 | PRK14948, PRK14948, DNA polymerase III subunits ga | 8e-04 | |
| pfam07174 | 297 | pfam07174, FAP, Fibronectin-attachment protein (FA | 0.001 | |
| cd04146 | 166 | cd04146, RERG_RasL11_like, Ras-related and Estroge | 0.001 | |
| PTZ00144 | 418 | PTZ00144, PTZ00144, dihydrolipoamide succinyltrans | 0.001 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 0.001 | |
| COG5178 | 2365 | COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p | 0.001 | |
| pfam07174 | 297 | pfam07174, FAP, Fibronectin-attachment protein (FA | 0.002 | |
| PRK14086 | 617 | PRK14086, dnaA, chromosomal replication initiation | 0.002 | |
| PRK14950 | 585 | PRK14950, PRK14950, DNA polymerase III subunits ga | 0.002 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 0.002 | |
| pfam12238 | 201 | pfam12238, MSA-2c, Merozoite surface antigen 2c | 0.002 | |
| TIGR02927 | 579 | TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena | 0.002 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 0.002 | |
| PLN02744 | 539 | PLN02744, PLN02744, dihydrolipoyllysine-residue ac | 0.002 | |
| pfam07174 | 297 | pfam07174, FAP, Fibronectin-attachment protein (FA | 0.003 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 0.003 | |
| TIGR02927 | 579 | TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena | 0.003 | |
| pfam02993 | 238 | pfam02993, MCPVI, Minor capsid protein VI | 0.003 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.003 | |
| PHA03377 | 1000 | PHA03377, PHA03377, EBNA-3C; Provisional | 0.003 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 0.003 | |
| pfam07174 | 297 | pfam07174, FAP, Fibronectin-attachment protein (FA | 0.004 | |
| PRK06975 | 656 | PRK06975, PRK06975, bifunctional uroporphyrinogen- | 0.004 | |
| PRK00404 | 141 | PRK00404, tatB, sec-independent translocase; Provi | 0.004 | |
| PRK05431 | 425 | PRK05431, PRK05431, seryl-tRNA synthetase; Provisi | 0.004 | |
| PRK11633 | 226 | PRK11633, PRK11633, cell division protein DedD; Pr | 0.004 |
| >gnl|CDD|218141 pfam04548, AIG1, AIG1 family | Back alignment and domain information |
|---|
Score = 285 bits (732), Expect = 1e-96
Identities = 113/216 (52%), Positives = 157/216 (72%), Gaps = 9/216 (4%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
+VL+G+TGNGKSATGNSILGRKAF++ + GVTKTC++ + DG+++NVIDTPGL
Sbjct: 1 LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTW-DGRIINVIDTPGL 59
Query: 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
FDLS ++F+ KEI++CL +A+ G HA L+V S+ RF++EEE A+ L LFG + DY
Sbjct: 60 FDLSVSNDFISKEIIRCLLLAEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDY 118
Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
MIVVFT DDLED +L+D+L CP+ LKE+L+ C R VLF+NK D + EQV+Q
Sbjct: 119 MIVVFTRKDDLED--DSLDDYLSDGCPEFLKEVLRECGGRYVLFNNK-ADGEEKEEQVQQ 175
Query: 200 LLSLVNSVIVQNGGQPYTDEL----KRGATELRDKK 231
LL+LV +++ +NGG+PYT++L K LR+K+
Sbjct: 176 LLALVEAIVKENGGKPYTNDLYEKIKEEGERLREKQ 211
|
Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211 |
| >gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1) | Back alignment and domain information |
|---|
Score = 272 bits (698), Expect = 1e-91
Identities = 103/207 (49%), Positives = 144/207 (69%), Gaps = 6/207 (2%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
+VL+G+TGNGKSATGN+ILGRK F++ +SGVTKTC+ ++ V DG+ VNVIDTPGL
Sbjct: 1 LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVW-DGRRVNVIDTPGL 59
Query: 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
FD S E + KEI++CL ++ G HAFL+V + RF++EEE AV L LFG+ V D+
Sbjct: 60 FDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPL-GRFTEEEEQAVEELQELFGEKVLDH 118
Query: 140 MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199
IV+FT GDDLE +LED+L + + LK +L+ C R V F+NK K + +QV++
Sbjct: 119 TIVLFTRGDDLEG--GSLEDYL-EDSCEALKRLLEKCGGRYVAFNNKAKGREQ-EQQVKE 174
Query: 200 LLSLVNSVIVQNGGQPYTDELKRGATE 226
LL+ V ++ +NGG+PYT+E+ A E
Sbjct: 175 LLAKVEEMVRENGGKPYTNEMYEEAEE 201
|
This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-11
Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 22/180 (12%)
Query: 23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV-VNVIDTPGLFD 81
V++GR G GKS+ N++LG + + S G T+ ++ L G+V + ++DTPGL +
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSD-VPGTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
F G + + G L+V T+R S EE+ + L L + + +I
Sbjct: 60 ------FGGLGREELARLLLRGADLILLVVDSTDRES-EEDAKLLILRRLRKEGI--PII 110
Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
+V D LE+ E L+E+ ++ KT + G +++ + L
Sbjct: 111 LVGNKIDLLEEREVEEL--------LRLEELAKILGVPVFEVSAKTGE---GVDELFEKL 159
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like) | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
T+++LG+TG GKS+T NSI G + SA S + E+ TV DG +N+IDTPGL
Sbjct: 33 TILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTV--DGFKLNIIDTPGLL 90
Query: 81 DLSAGS 86
+
Sbjct: 91 ESQDQR 96
|
The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248 |
| >gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 5e-08
Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 12/152 (7%)
Query: 215 PYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQM-----------QESYEDRIKRM 263
P TDE K E R + E K+ + + +M E+ E + R
Sbjct: 278 PLTDEFKEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRT 337
Query: 264 AEMVESGLKETTTRLEQQLAKEQAARLRAEEVAQLAEMKLKDEIQSRSTEKETAEPPKPS 323
AE E+ ++ +++ A+ + R +E A + + + +K+ P+
Sbjct: 338 AEKNEAKARKKEIAQKRRAAEREINREARQERAAAMA-RARARRAAVKAKKKGLIDASPN 396
Query: 324 ENPPPEPPRPPASPPREPPRPPASPPPKPSST 355
E+ P E SPP+ A P +PS
Sbjct: 397 EDTPSENEESKGSPPQVEATTTAEPNREPSQE 428
|
Length = 429 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-07
Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 11/133 (8%)
Query: 23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82
+ GR GKS+ N++LG+ S G T+ K L V +IDTPGL +
Sbjct: 1 AIFGRPNVGKSSLLNALLGQNVGIVSP-IPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59
Query: 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV 142
+E + A LV+ V + + EE A L GK V ++
Sbjct: 60 GGLGRERVEEARQVAD------RADLVLLVVDSDLTPVEEEAKLGLLRERGKPV----LL 109
Query: 143 VFTGGDDLEDHEK 155
V D + + E+
Sbjct: 110 VLNKIDLVPESEE 122
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-07
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
V L+GR GKS N++ G K S G T+ + VL G+ + ++DTPGL
Sbjct: 1 RVALVGRPNVGKSTLINALTGAKVAIVSD-YPGTTR--DPILGVLGLGRQIILVDTPGLI 57
Query: 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140
+ A + + L ++ L+V + ++++E + L L K +
Sbjct: 58 E-GASEGKGVEGFNRFLEAIRE-ADLILLVVDASEGLTEDDEEILEELEKLPKK----PI 111
Query: 141 IVVFT 145
I+V
Sbjct: 112 ILVLN 116
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
+++LG++G GKSAT NSI G F A G T E++ V G + VIDTPGL
Sbjct: 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGL- 176
Query: 81 DLSAGSE 87
S+ S+
Sbjct: 177 -KSSASD 182
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 7e-06
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 21/137 (15%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV---LKDGQVVNVIDTP 77
+ ++G GKS N++LG + +GVT T + T + L G V ++DTP
Sbjct: 2 LLAVVGEFSAGKSTLLNALLGEEVLP-----TGVTPTTAVITVLRYGLLKG--VVLVDTP 54
Query: 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF 137
GL + + + A + V S ++ E + + GK +F
Sbjct: 55 GLNSTIEHHTEITESFLP-------RADAVIFVLSADQPLTESEREFLKEILKWSGKKIF 107
Query: 138 DYMIVVFTGGDDLEDHE 154
V D L + E
Sbjct: 108 ----FVLNKIDLLSEEE 120
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 259 RIKRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVAQLAEMK-LKDEIQSRSTEKETA 317
RI+R + S + E + A++ AA + AE L +S ++
Sbjct: 27 RIERELRELRSLVAEGAAGPVAKAAEQMAA-------PEAAEAAPLPAAAESIAS---PE 76
Query: 318 EPPKPSENPPPEPPRPPASPPREPPRPPASPPPKP 352
PP P E P A P P P A+P P
Sbjct: 77 VPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAE 111
|
Length = 931 |
| >gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 12/96 (12%)
Query: 276 TRLEQQLAKEQAARLRAEEVAQ-LAEMKLKDEIQSRSTEKETAEPPKPSENPP------- 327
E + + + R E + L + + + E P+ +E P
Sbjct: 12 AAFEVITSAQLSRIGRIERELRELRSLVAEGAAGPVAKAAEQMAAPEAAEAAPLPAAAES 71
Query: 328 ---PE-PPRPPASPPREPPRPPASPPPKPSSTSDGW 359
PE PP P +P +E P A P + S
Sbjct: 72 IASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAP 107
|
Length = 931 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 20/49 (40%), Positives = 23/49 (46%)
Query: 309 SRSTEKETAEPPKPSENPPPEPPRPPASPPREPPRPPASPPPKPSSTSD 357
SRSTE P +P P P+ P PP P+ PP P PPP P
Sbjct: 2892 SRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQ 2940
|
Length = 3151 |
| >gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 262 RMAEMVESGLKE----TTTRLEQQLAKEQAARLRAEEVAQLAEMKLKDEIQSRSTEKETA 317
R AE+V++GL E T RL L + ARL A AE L ++ T + +
Sbjct: 331 RYAEVVQAGLGEMRGATAPRL---LLEVVCARLLLP-SASDAESALLQRVERIETRLDMS 386
Query: 318 EPPKPSENPPPEPPRPPASPPREPPRPPASPPPKPSST 355
P N P P P A+ P +P P P + T
Sbjct: 387 IPANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPT 424
|
Length = 584 |
| >gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 7e-05
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 25/136 (18%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
T++++G+ G GKS+T NSI+G + SA S G+ +T + G +N+IDTPGL
Sbjct: 40 TILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT---RAGFTLNIIDTPGL 96
Query: 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSV----------TNRFSQEEETAVHRLP 129
+ ++ A + I FL+ ++ R + + +
Sbjct: 97 IEGGYIND-----------QAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAIT 145
Query: 130 NLFGKNVFDYMIVVFT 145
+ FGK+++ +VV T
Sbjct: 146 DSFGKDIWRKSLVVLT 161
|
[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 16/40 (40%), Positives = 16/40 (40%)
Query: 319 PPKPSENPPPEPPRPPASPPREPPRPPASPPPKPSSTSDG 358
PP P P P PP P PP PPRP P G
Sbjct: 2914 PPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAG 2953
|
Length = 3151 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 309 SRSTEKETAEPPKPSENPPPEPPRPPASPPREPPRPPASPPPKPSST 355
R + + PP +P RPP PP+P PPP P
Sbjct: 2884 RRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930
|
Length = 3151 |
| >gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
VVLLG +G GKS+ N ++ +SG T E +V + + V D D
Sbjct: 3 VVLLGDSGVGKSSLANIFTAGVYEDSAYEASG-DDTYERTVSVDGEEATLVVYDHWEQED 61
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR--FSQEEET 123
+ C+ + A+++V+SVT+R F + E
Sbjct: 62 GMWLEDS-------CMQV----GDAYVIVYSVTDRSSFEKASEL 94
|
RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 35/173 (20%), Positives = 58/173 (33%), Gaps = 22/173 (12%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDT 76
E +V++G GKS N +LG K G T+ T + +DG+ N++DT
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYK-PGTTRNYVT-TVIEEDGKTYKFNLLDT 58
Query: 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNV 136
G D A + + + L VF + EE + +
Sbjct: 59 AGQEDYDAIRRLYYRAVE-----------SSLRVFDIVILVLDVEEILEKQTKEIIHHAE 107
Query: 137 FDYMIVVFTGGDDLEDHEKTLEDFLGHECPK----PLKEI-LQLCDNRCVLFD 184
I++ DL D L+ + K P+ + + N F
Sbjct: 108 SGVPIILVGNKIDLRD--AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFK 158
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729) | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 5e-04
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 315 ETAEPPKPSENPPPEPPRPPASP-PREPPRPPASPPPKP 352
E A PP E P P P PP+ P P R P PPP+P
Sbjct: 68 EPAAPPPDPEPPVPGPAGPPSPLAPPAPARKPPLPPPRP 106
|
This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115 |
| >gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 73/320 (22%), Positives = 113/320 (35%), Gaps = 85/320 (26%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTP 77
+ TV L+G GK+ N++ G A + GVT E K LK G + ++D P
Sbjct: 3 KLTVALVGNPNVGKTTLFNALTG--ANQKVGNWPGVT--VEKKEGKLKYKGHEIEIVDLP 58
Query: 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL------ 131
G + L+A SE E V + + + V TN + R NL
Sbjct: 59 GTYSLTAYSE---DEKVARDFLLEGKPDLIVNVVDATN---------LER--NLYLTLQL 104
Query: 132 --FGKNVFDYMIVVFTGGDDLED-----HEKTLEDFLGHECPKPLKEILQLCDNRCVLFD 184
G MI+ D+ + + L LG P
Sbjct: 105 LELGIP----MILALNMIDEAKKRGIRIDIEKLSKLLG--VP------------------ 140
Query: 185 NKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLK--EYSK 242
+V +V + G +ELKR EL + K + E +
Sbjct: 141 ------------------VVPTVAKRGEG---LEELKRAIIELAESKTTPREVDYGEEIE 179
Query: 243 REISKLMGQMQESYEDRIKRM--AEMVESGLKETTTRLEQQLAK----EQAARLRAEEVA 296
EI +L ++ IK + E+VE+ LKE R+E+ L + E L A+
Sbjct: 180 EEIKELEALSEDPRWLAIKLLEDDELVEAVLKEPEKRVEELLEELSEEEGHLLLIADARY 239
Query: 297 QLAEMKLKDEIQSRSTEKET 316
L E L+ ++ EK +
Sbjct: 240 ALIERILRSVVKQEEEEKSS 259
|
Length = 653 |
| >gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 13/81 (16%), Positives = 14/81 (17%)
Query: 278 LEQQLAKEQAARLRAEEVAQLAEMKLKDEIQSRSTEKETAEPPKPSENPPPEPPRPPASP 337
L E A S K PS P P P
Sbjct: 360 LPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPA 419
Query: 338 PREPPRPPASPPPKPSSTSDG 358
P P + S
Sbjct: 420 EPTEPSPTPPANAANAPPSLN 440
|
Length = 620 |
| >gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 318 EPPKPSENPPPEPPRPPASPPREPPRPPASPPPKP 352
PP P + P P A PP PP P +P P
Sbjct: 42 APPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDD 76
|
This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297 |
| >gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 15/109 (13%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVN--VIDTPGL 79
+ +LG +G GKSA L ++ + + ++ DG+ V+ + DTPG
Sbjct: 2 IAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTI----DGEQVSLEIQDTPGQ 57
Query: 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128
+ + L A F++V+S+T+R S + + + +L
Sbjct: 58 QQNEDPES-----LERSLRWA----DGFVLVYSITDRSSFDVVSQLLQL 97
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166 |
| >gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 299 AEMKLKDEIQSRSTEKETAEPPKPSENPPPEPPRPPASPPREPPRPPASPPPKPSSTS 356
A ++ T E + P+ PP +P +PP P + P P+ +
Sbjct: 127 AAPAAAAAAKAEKTTPEKPKAAAPTP-EPPAASKPTPPAAAKPPEPAPAAKPPPTPVA 183
|
Length = 418 |
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.001
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 17/120 (14%)
Query: 219 ELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMVESGLKETTTRL 278
EL++ A E E + LKE + + KL + ED++ AE KE +
Sbjct: 531 ELEQKAEEAEALLKEAEKLKEELEEKKEKL-----QEEEDKLLEEAE------KEAQQAI 579
Query: 279 EQQLAKEQAA----RLRAEEVAQLAEMKLKDEIQSRSTEKETAEPPKPSENPPPEPPRPP 334
++ AK++A LR + A +K + I++R + E + + E
Sbjct: 580 KE--AKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEEL 637
|
Length = 782 |
| >gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 322 PSENPPPEPPRPPASPPREPPRPPASPP 349
P NPPP PP P PP +PP PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP--PP 30
|
Length = 2365 |
| >gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.002
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 320 PKPSENPPPEPPRPPASPPREPPRPPASPPPKP 352
P P PP PA PP PPA+PP
Sbjct: 41 PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQ 73
|
This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297 |
| >gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 13/58 (22%)
Query: 309 SRSTEKETAEPPKPSENPPPEP---PRPPAS----------PPREPPRPPASPPPKPS 353
R + TA P P+ PEP PR PPR P PAS P+
Sbjct: 134 PRQDQLPTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQE 191
|
Length = 617 |
| >gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 319 PPKPSENPPPEPPRPPASPPREPPRPPASPPPKPSSTSD 357
P PP P P +PP A + + D
Sbjct: 401 EPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVD 439
|
Length = 585 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 319 PPKPSENPPPEPPRPPASPPREPPRPPASPPPKPSSTSDG 358
P PS +P P P PPA P RP S P + S G
Sbjct: 344 GPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAG 383
|
Length = 1352 |
| >gnl|CDD|221480 pfam12238, MSA-2c, Merozoite surface antigen 2c | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 15/52 (28%), Positives = 20/52 (38%)
Query: 307 IQSRSTEKETAEPPKPSENPPPEPPRPPASPPREPPRPPASPPPKPSSTSDG 358
S S T P S P P P +P +P +P +P SS + G
Sbjct: 145 KHSSSQGTSTTRPSDGSATPNTSAPPTPGNPAAQPEKPAETPKGNGSSFTFG 196
|
This family of proteins is found in eukaryotes. Proteins in this family are typically between 263 and 318 amino acids in length. There is a conserved SFT sequence motif. MSA-2 is a plasma membrane glycoprotein which can be found in Babesia bovis species. Length = 201 |
| >gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.002
Identities = 15/40 (37%), Positives = 15/40 (37%)
Query: 313 EKETAEPPKPSENPPPEPPRPPASPPREPPRPPASPPPKP 352
E E P PSE P P A P P PPA P
Sbjct: 209 EPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPA 248
|
This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.002
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
VV++G G+GKS+ + ++G + G V D ++N+ D
Sbjct: 2 VVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQG-DTLAVDTLEVDGDTGLLNIWDF----- 55
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFGKNVFDYM 140
G E + E + + A A L+V+ +T+R S E + + LPNL +
Sbjct: 56 --GGREELKFEHIIFMKWAD----AILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPV 109
Query: 141 IVV 143
I+V
Sbjct: 110 ILV 112
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 316 TAEPPKPSENPPPEPPRPPASP-PREPPRPPASPPPKPSSTSD 357
+A P P P P PP+ P P P AS P P S+ D
Sbjct: 205 SAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGD 247
|
Length = 539 |
| >gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.003
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 316 TAEPPKPSENPPPEPPRPPASPPREPPRPPASPPPKPSS 354
A P + PPP P PPA P +P P PP P++
Sbjct: 52 AAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNA 90
|
This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 317 AEPPKPSENPPPEPPRPPASPPREPPRPPASPPPKPSSTS 356
+ P PS PPP P P PR P + T
Sbjct: 348 SRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTR 387
|
Length = 1352 |
| >gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.003
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 296 AQLAEMKLKDEIQSRSTEKETAEPPKPSENPPPEPPRPPASPPREP-PRPPASPPPKPSS 354
A A + +E +E + P P+ P P PPA P PA+ P S
Sbjct: 203 ANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSSG 262
Query: 355 TS 356
S
Sbjct: 263 DS 264
|
This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579 |
| >gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.003
Identities = 18/75 (24%), Positives = 23/75 (30%), Gaps = 15/75 (20%)
Query: 278 LEQQLAKEQAARLRAEEVAQLAEMKLKDEIQSRSTEKETAEPPKPSENPPPEPPRPPASP 337
+E+ L K L EE A ++ET P + P P P
Sbjct: 98 VEKDLEKLLEKVLGEEEPA---------------PQEETVADPIQALQPRPRPDVEEVLV 142
Query: 338 PREPPRPPASPPPKP 352
P P P KP
Sbjct: 143 PAAPEPPSYEETIKP 157
|
This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238 |
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 16/112 (14%)
Query: 218 DELKRGATELRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMV--ESGLKETT 275
EL +E R ++A++ L E E K + Q+ K++ E+ ES LK
Sbjct: 185 AELTTLLSEQRAQQAKLAQLLE----ERKKTLAQLNSELSADQKKLEELRANESRLKNEI 240
Query: 276 TRLEQQLAK--EQAARLRAEEVAQLAEMKLKDEIQSRSTEKETAEPPKPSEN 325
E AK E AA A A + ET +P P +
Sbjct: 241 ASAEAAAAKAREAAAAAEAAAARARAAEAKR--------TGETYKPTAPEKM 284
|
Length = 420 |
| >gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.003
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 13/72 (18%)
Query: 304 KDEIQSRSTEKETAEP--PKPSENP--PPEPPRPPA---------SPPREPPRPPASPPP 350
K +S E+ + P P PS+ P P EP PP+ PP P P
Sbjct: 435 KTSGRSDEAEQAQSTPERPGPSDQPSVPVEPAHLTPVEHTTVILHQPPQSPPTVAIKPAP 494
Query: 351 KPSSTSDGWCAI 362
PS G C +
Sbjct: 495 PPSRRRRGACVV 506
|
Length = 1000 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.003
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 8/62 (12%)
Query: 302 KLKDEIQSRSTEKETAEPPKPSENPPPEPPRPPASPPREPP--------RPPASPPPKPS 353
K + E + + A P P P A+P P +P PKP+
Sbjct: 11 KGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPA 70
Query: 354 ST 355
S
Sbjct: 71 SL 72
|
Length = 475 |
| >gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.004
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 319 PPKPSENPPPEPPRPPASPPREPPRPPASPPPKPSSTSDG 358
P PP PPA+PP P P + PP P + +
Sbjct: 51 AAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNA 90
|
This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297 |
| >gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 7/77 (9%)
Query: 287 AARLRAEEVAQLAEMKLKDEIQSRSTEKETAEPPKPSENPPPEPPRPPASPPREPPRPPA 346
A A+ AQ A + + + T S P +PP PP P
Sbjct: 261 AFLTWADAAAQPAT-------AAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPP 313
Query: 347 SPPPKPSSTSDGWCAIM 363
PP + S ++
Sbjct: 314 EPPARRGRGSAALWFVV 330
|
Length = 656 |
| >gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.004
Identities = 15/54 (27%), Positives = 19/54 (35%)
Query: 292 AEEVAQLAEMKLKDEIQSRSTEKETAEPPKPSENPPPEPPRPPASPPREPPRPP 345
E V + + A PP P+ P PP S P +PPR P
Sbjct: 88 PEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRAP 141
|
Length = 141 |
| >gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 0.004
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 218 DELKRGATELRDKKAEVDSLKEYSKR-EISKLMGQMQESYEDRIKRMAEMVESGLKETTT 276
DEL E R+ + E++ L+ ++R +SK +GQ + ED +AE+ E LKE
Sbjct: 28 DELLELDEERRELQTELEELQ--AERNALSKEIGQAKRKGEDAEALIAEVKE--LKEEIK 83
Query: 277 RLEQQLAKEQAAR 289
LE +L + +A
Sbjct: 84 ALEAELDELEAEL 96
|
Length = 425 |
| >gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 319 PPKPSENPPPEPPRPPASPPREPPRPPASPPPKP 352
PKP E P P+P P+P P +
Sbjct: 108 KPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEE 141
|
Length = 226 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 363 | |||
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 100.0 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 100.0 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.91 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.86 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.85 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.82 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.81 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.8 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.79 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.77 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.77 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.76 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.74 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.73 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.71 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.71 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.71 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.7 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.7 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.69 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.69 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.69 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.69 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.68 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.67 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.67 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.67 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.67 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.67 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.66 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.65 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.65 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.65 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.65 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.65 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 99.64 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.64 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.64 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.64 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.64 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.63 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.63 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.63 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.63 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.62 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.62 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.62 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.62 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.62 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.61 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.61 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.61 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.61 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.61 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.61 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.61 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.6 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.6 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 99.59 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.59 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.58 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.58 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.58 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.58 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.58 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.58 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.58 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.58 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.58 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.58 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.58 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.57 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.57 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.57 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.57 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.57 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.57 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.57 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.56 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.56 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.56 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.56 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.56 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.56 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.56 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.56 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.56 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.56 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.56 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.55 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.55 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.55 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.55 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.55 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.55 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.55 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.55 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.55 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.55 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.55 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.55 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.54 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.54 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.54 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.54 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.54 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.54 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.54 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.54 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.54 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 99.54 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.54 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.54 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.54 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.54 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.54 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.54 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.53 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.53 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.53 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.53 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.53 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.53 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.53 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.53 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.53 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.53 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.53 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.53 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.53 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.53 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.52 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.52 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.52 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.52 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.52 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.52 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.52 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.52 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.51 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.51 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.51 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.5 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.5 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.5 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.5 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.5 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.5 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.5 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.5 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.5 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.49 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.49 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.49 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.49 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.49 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.49 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.49 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.49 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.48 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.48 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.48 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.48 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.48 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.48 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.48 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.48 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.48 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.48 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.48 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.47 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.47 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.47 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.47 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.47 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.47 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.47 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.47 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.47 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.46 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.46 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.46 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.46 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.46 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.45 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.45 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.45 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.44 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.44 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.44 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.44 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.44 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.44 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.44 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.43 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.43 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.43 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.43 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.42 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.42 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.42 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.42 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.41 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.41 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.41 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.41 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.4 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.39 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.39 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.39 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.38 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.38 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.38 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.37 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.37 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.36 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.36 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.36 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.35 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.35 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.35 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.34 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.34 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.34 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.34 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.33 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.33 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.33 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.32 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.32 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.32 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.32 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.32 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.3 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.3 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.3 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.29 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.28 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.28 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.27 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.27 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.27 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.27 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.27 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.27 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.26 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.25 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.25 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.25 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.23 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.22 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.22 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.22 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 99.21 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.21 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 99.2 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.19 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.18 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.14 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.14 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.13 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.12 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.12 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.12 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.1 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.09 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.08 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.07 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.07 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.05 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.05 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.05 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.04 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.04 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.01 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.0 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.0 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 98.99 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 98.98 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 98.98 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 98.98 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 98.96 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.96 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.95 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 98.94 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 98.94 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 98.92 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 98.91 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.9 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 98.9 | |
| PRK13768 | 253 | GTPase; Provisional | 98.89 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 98.88 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 98.88 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 98.87 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 98.87 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 98.85 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.85 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 98.85 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 98.82 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.82 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.82 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.79 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 98.79 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.78 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 98.78 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.78 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.78 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.74 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 98.73 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 98.73 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.73 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 98.73 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 98.73 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 98.73 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 98.72 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 98.72 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.71 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 98.7 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 98.7 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.69 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 98.69 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 98.68 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 98.67 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 98.66 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 98.65 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 98.65 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 98.65 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 98.65 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 98.65 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.64 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 98.64 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.64 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 98.64 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 98.64 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.63 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 98.62 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.62 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 98.61 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 98.61 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.61 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 98.61 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 98.6 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 98.6 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 98.6 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 98.59 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 98.59 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 98.59 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 98.59 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 98.59 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.58 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.58 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 98.58 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 98.57 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 98.57 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 98.57 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 98.56 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.56 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 98.56 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 98.56 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 98.56 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 98.56 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 98.56 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.55 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 98.55 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 98.54 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 98.54 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 98.54 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 98.53 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 98.53 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 98.53 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 98.53 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 98.53 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 98.52 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.52 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 98.52 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 98.52 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 98.51 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 98.51 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 98.51 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 98.51 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 98.51 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 98.5 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 98.5 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 98.49 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 98.49 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 98.49 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 98.49 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 98.49 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 98.49 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 98.48 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 98.48 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 98.48 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 98.48 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 98.48 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 98.47 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 98.47 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 98.47 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 98.46 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 98.46 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 98.46 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 98.46 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 98.46 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.46 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 98.46 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 98.46 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 98.46 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 98.46 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 98.46 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 98.46 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 98.45 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 98.45 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 98.45 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.45 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 98.45 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 98.45 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 98.45 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.45 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.45 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 98.44 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 98.44 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 98.43 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 98.43 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 98.43 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 98.43 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 98.43 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 98.43 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 98.43 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 98.43 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 98.43 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.42 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.42 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 98.42 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 98.42 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 98.42 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 98.42 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 98.42 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 98.42 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 98.41 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 98.41 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 98.41 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 98.41 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.41 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 98.4 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 98.4 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 98.4 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 98.4 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 98.4 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 98.39 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 98.39 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 98.39 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 98.39 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 98.39 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 98.39 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 98.39 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 98.38 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 98.38 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 98.38 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 98.38 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 98.38 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 98.38 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 98.38 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 98.37 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 98.37 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 98.37 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 98.37 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 98.37 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 98.37 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 98.37 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 98.37 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 98.37 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 98.36 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 98.36 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 98.36 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 98.36 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 98.36 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 98.36 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 98.36 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 98.36 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 98.36 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 98.35 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 98.35 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 98.35 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 98.35 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 98.35 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 98.35 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 98.35 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 98.35 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.35 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 98.35 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 98.34 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 98.34 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.34 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 98.34 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 98.34 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 98.34 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 98.34 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 98.33 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 98.33 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 98.33 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 98.32 |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=226.94 Aligned_cols=204 Identities=42% Similarity=0.748 Sum_probs=168.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
++|+|+|.+|+||||++|+|+|...|.+.....++|..+......+ ++..++|+||||+.+......++.+++.+++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 4899999999999999999999999888766677888888888777 899999999999999887778888999998888
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
...++|+++||++.+ +++..++..++.+..+||.+++++++||+|++|.... ..+++++....+..++.++..|++|
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCE
Confidence 888999999999999 9999999999999999999999999999999999877 6688888843345689999999999
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHHHHHhHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATEL 227 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 227 (363)
|++|++..........++.+|++.|+.++..+++.+|...+++..++.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~ 204 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEER 204 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHC
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence 999998844445566899999999999999999999999888766543
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-31 Score=213.72 Aligned_cols=195 Identities=51% Similarity=0.860 Sum_probs=170.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
++|+|||.+|+|||||+|+|+|...+.+.....++|..+..+...+ ++..++|+||||+++.......+..++.+++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 4799999999999999999999988766555556777777777777 788999999999998766666777888888877
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
+..++|++++|++++ +++..+...++.+...||..+++++++|+|++|.+.. ..+++++.. ....++.++..|+++
T Consensus 80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~l~~~c~~r 155 (196)
T cd01852 80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKRLLEKCGGR 155 (196)
T ss_pred cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHHHHHHhCCe
Confidence 778999999999998 5999999999999999998888899999999999977 788888886 557899999999999
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 220 (363)
|+.|++... ++..+.++.+|++.|++++.++++.+|..++
T Consensus 156 ~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~ 195 (196)
T cd01852 156 YVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDM 195 (196)
T ss_pred EEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 999999876 7788999999999999999999888887653
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=171.85 Aligned_cols=178 Identities=21% Similarity=0.317 Sum_probs=142.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+.|+|||++++|||||+|.|.|+.. +..+....|++..+......++.++.|+||||++.. ...+.+.+.+.+.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~ 80 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAAR 80 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHH
Confidence 37999999999999999999999988 667888889998888887767889999999999984 5667778888888
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhh-HHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~ 177 (363)
.+..++|+++||+++++.++.++...++.++.. ..|+++++||+|.... .. +..+... +...
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~--~~~l~~~~~~-----~~~~----- 143 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKP--KTVLLKLIAF-----LKKL----- 143 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhhc-----CCCeEEEEEccccCCc--HHHHHHHHHH-----HHhh-----
Confidence 888999999999999977999999999888872 1289999999999877 33 3333322 2211
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKR 222 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 222 (363)
+.|......|+..+.++..|++.+...+.+ +..+|..+...
T Consensus 144 ---~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe-g~~~yp~d~it 184 (298)
T COG1159 144 ---LPFKEIVPISALKGDNVDTLLEIIKEYLPE-GPWYYPEDQIT 184 (298)
T ss_pred ---CCcceEEEeeccccCCHHHHHHHHHHhCCC-CCCcCChhhcc
Confidence 133355578999999999999999998876 33446665544
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=167.58 Aligned_cols=160 Identities=21% Similarity=0.287 Sum_probs=122.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH---HHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE---FVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---~~~~~~~~~ 96 (363)
.+|+|||++|+|||||+|+|+|...|.+... ...|+......... ++..++||||||+.+...... .+.+.+.++
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~-~~~TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAF-GMGTTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCC-CCCceEEEEEEEEE-CCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 6999999999999999999999987665433 33455554444444 688899999999998643322 233333333
Q ss_pred HhccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcch-----hhHHHHhccCCCchHH
Q 017924 97 LGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-----KTLEDFLGHECPKPLK 170 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~-----~~l~~~~~~~~~~~~~ 170 (363)
+. ..++|++|||++++ .+.+.++...++.+..+||.++++++|||+||+|...+++ ..+++|+.. ..+.++
T Consensus 197 Ls--k~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~Lq 273 (763)
T TIGR00993 197 IK--KNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIVQ 273 (763)
T ss_pred Hh--cCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHHH
Confidence 32 23689999999876 2333467889999999999999999999999999997533 579999986 677899
Q ss_pred HHHHhcCCceEEec
Q 017924 171 EILQLCDNRCVLFD 184 (363)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (363)
.++..|.+++.+|+
T Consensus 274 ~~Irq~~g~~~l~n 287 (763)
T TIGR00993 274 QAIGQAVGDLRLMN 287 (763)
T ss_pred HHHHHhcCcceecc
Confidence 99999999888876
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-20 Score=155.47 Aligned_cols=155 Identities=24% Similarity=0.307 Sum_probs=113.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+..+|+|+|.+|+|||||+|+|+|...+...... +.+.......... ++..++||||||+++......++.+.+..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~-s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ-SEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC-CcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 45589999999999999999999998764332222 2222232333334 788999999999998543333333333332
Q ss_pred HhccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
+. ..++|+++||.+++ .+++..+...++.+...||.+++.++++++||+|....++..+++|+.+ ..+.++.++..
T Consensus 114 l~--~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~~i~~ 190 (313)
T TIGR00991 114 LL--GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLRVIHS 190 (313)
T ss_pred hh--cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHHHHHH
Confidence 22 24799999997765 4788899999999999999999999999999999886666789999876 56667777765
Q ss_pred c
Q 017924 176 C 176 (363)
Q Consensus 176 ~ 176 (363)
.
T Consensus 191 ~ 191 (313)
T TIGR00991 191 G 191 (313)
T ss_pred H
Confidence 4
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-19 Score=151.13 Aligned_cols=174 Identities=18% Similarity=0.229 Sum_probs=111.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
++|+|+|.+|||||||+|+|+|... +..+..+.|+...+......++..+.++||||+.... ....+.+.+.+..
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~--~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~ 75 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKI--SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARS 75 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcE--eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHH
Confidence 4799999999999999999999875 2234444455544444444356678999999987642 2233344444445
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
+...+|++++|+|++...+. +...+..+.. .+ .|+++|+||+|.... ..+...... +.....
T Consensus 76 ~l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~-~~----~p~ilV~NK~Dl~~~--~~~~~~~~~--------~~~~~~-- 137 (270)
T TIGR00436 76 AIGGVDLILFVVDSDQWNGD-GEFVLTKLQN-LK----RPVVLTRNKLDNKFK--DKLLPLIDK--------YAILED-- 137 (270)
T ss_pred HHhhCCEEEEEEECCCCCch-HHHHHHHHHh-cC----CCEEEEEECeeCCCH--HHHHHHHHH--------HHhhcC--
Confidence 55688999999999844333 3334444433 22 389999999998744 333222222 222211
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 220 (363)
+......|+..+.++++|++.+...+... ..+|..+.
T Consensus 138 ---~~~v~~iSA~~g~gi~~L~~~l~~~l~~~-~~~~~~~~ 174 (270)
T TIGR00436 138 ---FKDIVPISALTGDNTSFLAAFIEVHLPEG-PFRYPEDY 174 (270)
T ss_pred ---CCceEEEecCCCCCHHHHHHHHHHhCCCC-CCCCCCcc
Confidence 11234678889999999999998887552 23355443
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=144.96 Aligned_cols=132 Identities=28% Similarity=0.335 Sum_probs=99.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC---ChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA---GSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~ 93 (363)
....+|+|+|.+|+|||||+|+|+|...+..... .+.|.....+...+ ++..++||||||+.+... ....+...+
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~-~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAF-QSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 4458999999999999999999999876443322 23455555555555 788899999999987632 122333334
Q ss_pred HHHHhccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 94 VKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.+++. ....|+++||..++ .+++..+...++.+...||.+++.++++|+||+|....
T Consensus 107 ~~~l~--~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLK--KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHh--ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 43332 23678999998776 47888889999999999999889999999999998865
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-18 Score=148.14 Aligned_cols=176 Identities=20% Similarity=0.315 Sum_probs=116.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+.|+|+|.+|||||||+|+|+|.... ..+....|+...+......++..++++||||+.... ..+.+.+.....
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~--~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~ 79 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKIS--IVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAW 79 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCcee--ecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHH
Confidence 379999999999999999999998752 233344455444444433355789999999988643 233444444555
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.....+|++++|+|+++.++..+...+..+... + .|+++|+||+|+.... ..+...+.. +. ...+
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-~----~pvilVlNKiDl~~~~-~~l~~~~~~-----l~---~~~~- 144 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-K----TPVILVLNKIDLVKDK-EELLPLLEE-----LS---ELMD- 144 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-C----CCEEEEEECCcCCCCH-HHHHHHHHH-----HH---hhCC-
Confidence 556688999999999865777666666655521 1 3899999999998331 333333333 22 2111
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE 219 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 219 (363)
+......|+..+.++.+|++.+...+.... .+|..+
T Consensus 145 ----~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~-~~y~~~ 180 (292)
T PRK00089 145 ----FAEIVPISALKGDNVDELLDVIAKYLPEGP-PYYPED 180 (292)
T ss_pred ----CCeEEEecCCCCCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence 222335677888999999999988876532 345544
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-18 Score=131.22 Aligned_cols=156 Identities=21% Similarity=0.262 Sum_probs=95.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
++|+++|.+|+|||||+|+|+|.... .+.. .+.|++.....+.+ .+..+.++|+||+.+......+ +.+.....
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~-v~n~-pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~e--e~v~~~~l- 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQK-VGNW-PGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEE--ERVARDYL- 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEE-EEES-TTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHH--HHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCce-ecCC-CCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcH--HHHHHHHH-
Confidence 47999999999999999999999853 2232 34566666666666 7789999999998775433321 22222221
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
.....|++++|+|++ ++.. +...+.++.++ | .|+++++||+|.....+..++ ...+-+..+..
T Consensus 75 ~~~~~D~ii~VvDa~-~l~r-~l~l~~ql~e~-g----~P~vvvlN~~D~a~~~g~~id----------~~~Ls~~Lg~p 137 (156)
T PF02421_consen 75 LSEKPDLIIVVVDAT-NLER-NLYLTLQLLEL-G----IPVVVVLNKMDEAERKGIEID----------AEKLSERLGVP 137 (156)
T ss_dssp HHTSSSEEEEEEEGG-GHHH-HHHHHHHHHHT-T----SSEEEEEETHHHHHHTTEEE-----------HHHHHHHHTS-
T ss_pred hhcCCCEEEEECCCC-CHHH-HHHHHHHHHHc-C----CCEEEEEeCHHHHHHcCCEEC----------HHHHHHHhCCC
Confidence 135789999999998 4422 23333333332 3 399999999998755222211 22233333433
Q ss_pred eEEecCCCcccccchhHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLV 204 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l 204 (363)
.+ ..++..+.++++|++.|
T Consensus 138 vi------~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 138 VI------PVSARTGEGIDELKDAI 156 (156)
T ss_dssp EE------EEBTTTTBTHHHHHHHH
T ss_pred EE------EEEeCCCcCHHHHHhhC
Confidence 33 45677888999998764
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=144.26 Aligned_cols=176 Identities=22% Similarity=0.247 Sum_probs=121.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE-EEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.++|+|||++++|||||+|+|+|+.... .+....|+...+.. +.+ +++.+.++||.|+..-..-.+.+...-....
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~I--v~~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVI--VSDIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEE--ecCCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 4899999999999999999999998733 44444455555544 444 8999999999998643211110000001111
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+...++++++|+|++..++..+......+.+. |. .++||+||||.+..+...++++... +...+...+
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g~----~~vIvvNKWDl~~~~~~~~~~~k~~-----i~~~l~~l~ 324 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEA-GR----GIVIVVNKWDLVEEDEATMEEFKKK-----LRRKLPFLD 324 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-CC----CeEEEEEccccCCchhhHHHHHHHH-----HHHHhcccc
Confidence 2233567999999999988999998888877764 33 7999999999987543455555444 444443322
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHHcC
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 212 (363)
|......|+.++.++..+++.+........
T Consensus 325 -----~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~ 354 (444)
T COG1160 325 -----FAPIVFISALTGQGLDKLFEAIKEIYECAT 354 (444)
T ss_pred -----CCeEEEEEecCCCChHHHHHHHHHHHHHhc
Confidence 333346788899999999999988876643
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=144.97 Aligned_cols=160 Identities=23% Similarity=0.238 Sum_probs=117.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|||++|+|||||+|.|+|+.. +.+...+ +|.+-.+....| .+..+.++||.|+.+.. .+.+...+.....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~--AIV~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~ 78 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI--AIVSDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGD--EDELQELIREQAL 78 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee--eEeecCCCCccCCccceeEE-cCceEEEEECCCCCcCC--chHHHHHHHHHHH
Confidence 5899999999999999999999976 3233333 455555556677 78889999999998632 3456667777777
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.+...+|+++||+|+...++..+....+++.. .+. |+++|+||+|.... +. . ..++...-
T Consensus 79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~-~~k----pviLvvNK~D~~~~--e~---~--------~~efyslG-- 138 (444)
T COG1160 79 IAIEEADVILFVVDGREGITPADEEIAKILRR-SKK----PVILVVNKIDNLKA--EE---L--------AYEFYSLG-- 138 (444)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-cCC----CEEEEEEcccCchh--hh---h--------HHHHHhcC--
Confidence 77788999999999987899999998888873 222 89999999997733 11 1 22233221
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
|......|+..+.++.+|++.+...+
T Consensus 139 ----~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 139 ----FGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred ----CCCceEeehhhccCHHHHHHHHHhhc
Confidence 22223568888999999999888775
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=145.54 Aligned_cols=175 Identities=21% Similarity=0.235 Sum_probs=111.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..+|+|+|.+|+|||||+|.|+|... +..+....|+...+. .+.. ++..+.|+||||+.... ..+...+.+..
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~--~ivs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~---~~l~~~~~r~~ 125 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKL--SIVTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPK---GSLEKAMVRCA 125 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCce--eeccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCc---ccHHHHHHHHH
Confidence 35999999999999999999998765 222333334333332 2334 67789999999986532 22344455544
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..++.++|++++|+|....+...+..++..+... + .+.++|+||+|+... .+.+. .+.+....
T Consensus 126 ~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~----~p~IlViNKiDl~~~---~~~~~---------~~~l~~~~ 188 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-N----IVPIFLLNKIDIESK---YLNDI---------KAFLTENH 188 (339)
T ss_pred HHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEEhhcCccc---cHHHH---------HHHHHhcC
Confidence 4556789999999998766776666566555432 2 267889999998533 12222 12222211
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELK 221 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 221 (363)
. +......|+..+.++.+|++.+...+.. +..+|..+..
T Consensus 189 ~----~~~i~~iSAktg~gv~eL~~~L~~~l~~-~~~~~~~~~~ 227 (339)
T PRK15494 189 P----DSLLFPISALSGKNIDGLLEYITSKAKI-SPWLYAEDDI 227 (339)
T ss_pred C----CcEEEEEeccCccCHHHHHHHHHHhCCC-CCCCCCCCCC
Confidence 1 1122366888899999999999887765 3334555543
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-16 Score=136.16 Aligned_cols=165 Identities=21% Similarity=0.253 Sum_probs=115.5
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
-..+.+|+|+|++|+|||||+|+|++++. +.++..+.|+++.+......+|..+.++||.|+..+ ++.+.+.=..
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~--AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet---~d~VE~iGIe 288 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDR--AIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRET---DDVVERIGIE 288 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCc--eEecCCCCCccceEEEEEEECCEEEEEEecCCcccC---ccHHHHHHHH
Confidence 35678999999999999999999999987 446666667766666554449999999999999874 3333332222
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
........+|.++||+|++..++..+...+. .... .+++++|+||.|+... ...... ..
T Consensus 289 Rs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~---~~~~---~~~~i~v~NK~DL~~~--~~~~~~-------------~~ 347 (454)
T COG0486 289 RAKKAIEEADLVLFVLDASQPLDKEDLALIE---LLPK---KKPIIVVLNKADLVSK--IELESE-------------KL 347 (454)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCchhhHHHHH---hccc---CCCEEEEEechhcccc--cccchh-------------hc
Confidence 2333446789999999998556777776666 1111 1289999999999876 221111 11
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
.....+ ...|++++.++..|.+.|...+...
T Consensus 348 ~~~~~~-----i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 348 ANGDAI-----ISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred cCCCce-----EEEEecCccCHHHHHHHHHHHHhhc
Confidence 111111 2457788899999999998887653
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8e-16 Score=119.76 Aligned_cols=171 Identities=16% Similarity=0.156 Sum_probs=107.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH---HHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE---FVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---~~~~~~~ 94 (363)
...-|+++|++++|||||||+|+|+....- .+..+..| ..+..+.+ + ..+.++|.||++....+.. .+...+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LAr-tSktPGrT-q~iNff~~-~-~~~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLAR-TSKTPGRT-QLINFFEV-D-DELRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceee-cCCCCCcc-ceeEEEEe-c-CcEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 456899999999999999999999763111 22222222 23333333 2 2367999999998776552 2333444
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.++... ....++++++|+.+.....|+..++++... +- ++++++||+|.+.. ......+.. ....+.
T Consensus 99 ~YL~~R-~~L~~vvlliD~r~~~~~~D~em~~~l~~~-~i----~~~vv~tK~DKi~~--~~~~k~l~~-----v~~~l~ 165 (200)
T COG0218 99 EYLEKR-ANLKGVVLLIDARHPPKDLDREMIEFLLEL-GI----PVIVVLTKADKLKK--SERNKQLNK-----VAEELK 165 (200)
T ss_pred HHHhhc-hhheEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CeEEEEEccccCCh--hHHHHHHHH-----HHHHhc
Confidence 444332 347889999999878888898888887764 32 89999999999976 333333333 222221
Q ss_pred h-cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 L-CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
. ...... ....|+..+.++++|...|...+.
T Consensus 166 ~~~~~~~~----~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 166 KPPPDDQW----VVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CCCCccce----EEEEecccccCHHHHHHHHHHHhh
Confidence 1 111100 112345566778888888877654
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=139.43 Aligned_cols=174 Identities=22% Similarity=0.241 Sum_probs=110.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|.+|+|||||+|+|+|..........+ .|.+.....+.. ++..+.++||||+.........+........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~g-tt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAG-TTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCC-ceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 45899999999999999999999887533322222 233333333334 6778899999998653322211111111112
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+...+|++++|+|++..++..+...+..+... + .++++++||||+... ..++++... +...+....
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~----~~~ivv~NK~Dl~~~--~~~~~~~~~-----~~~~l~~~~ 317 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEA-G----RALVIVVNKWDLVDE--KTMEEFKKE-----LRRRLPFLD 317 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCCCH--HHHHHHHHH-----HHHhccccc
Confidence 2234577999999999877888777766655442 2 289999999998844 334333333 332222211
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+......|+..+.++.++++.+......
T Consensus 318 -----~~~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 318 -----YAPIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred -----CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1223467888899999999988877654
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-16 Score=116.63 Aligned_cols=116 Identities=25% Similarity=0.336 Sum_probs=75.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|.+|+|||||+|+|+|.......... ..|....+..+.+ ++..+.++||||+.+....... .+.+..++...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~-~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~-~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIP-GTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDND-GKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSST-TSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHH-HHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccc-cceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHH-HHHHHHHHHHH
Confidence 6899999999999999999986543332322 2343443334445 7788889999999875322221 12233333333
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeC
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~ 146 (363)
..+|+++||+++++.....+...++.+. .+ .++++|+||
T Consensus 78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~~----~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPITEDDKNILRELK--NK----KPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSHHHHHHHHHHHH--TT----SEEEEEEES
T ss_pred -HHCCEEEEEEECCCCCCHHHHHHHHHHh--cC----CCEEEEEcC
Confidence 6789999999987433444555556553 22 389999997
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-15 Score=121.61 Aligned_cols=165 Identities=23% Similarity=0.277 Sum_probs=99.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|.+|+|||||+|.|+|...... .....++...........+..+.++||||+....... ...+.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIV--SPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL---GERMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEec--cCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH---HHHHHHHHH
Confidence 37999999999999999999998764221 2222232222222222245678899999987643221 112333333
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
......|+++++++.++.++......+..+... + .++++|+||+|..... ..+.+++.. +. ....
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-~----~~~iiv~nK~Dl~~~~-~~~~~~~~~-----~~---~~~~- 142 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-K----TPVILVLNKIDLVKDK-EDLLPLLEK-----LK---ELGP- 142 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-C----CCEEEEEEchhccccH-HHHHHHHHH-----HH---hccC-
Confidence 345678999999999855555555555555432 1 2899999999987321 333333333 22 1111
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
+......++..+.++.++++.|.+.
T Consensus 143 ----~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 143 ----FAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ----CCceEEEEeccCCChHHHHHHHHhh
Confidence 1122345667788888888877653
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=120.55 Aligned_cols=160 Identities=19% Similarity=0.211 Sum_probs=95.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcccc--cccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKA--FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+|+|+|..|+|||||+|+|+|... +.. ....+.|.........+..+..+.++||||... +...+.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~ 69 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPE-EKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNML 69 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchh-hhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHH
Confidence 699999999999999999997532 111 111223444444444442267889999999532 222233
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
..+.++|++++|+|+++.+.......+..+.. .+. .++++++||+|+... ..+...... +.+.+...+.
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~~---~~~ilv~NK~Dl~~~--~~~~~~~~~-----~~~~~~~~~~ 138 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILEL-LGI---KRGLVVLTKADLVDE--DWLELVEEE-----IRELLAGTFL 138 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hCC---CcEEEEEECccccCH--HHHHHHHHH-----HHHHHHhcCc
Confidence 34567899999999874444444444443332 222 279999999998754 222222222 3333332110
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
. .......|++.+.+++++++.+..
T Consensus 139 ~---~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 139 A---DAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred C---CCcEEEEeCCCCcCHHHHHHHHhh
Confidence 0 011235677888899998887643
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-15 Score=137.61 Aligned_cols=174 Identities=24% Similarity=0.239 Sum_probs=109.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|.+|+|||||+|+|+|.......... +.|.+.....+.. ++..+.++||||+.........+.........
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~-gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIA-GTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCC-CceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 469999999999999999999987643222222 2233333333344 67789999999986543222111111111112
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.+...+|++++|+|+++.++..+...+..+... + .++++|+||+|+... ...++++... +...+.....
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~~~-~~~~~~~~~~-----~~~~~~~~~~ 318 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLRIAGLILEA-G----KALVIVVNKWDLVKD-EKTREEFKKE-----LRRKLPFLDF 318 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-C----CcEEEEEECcccCCC-HHHHHHHHHH-----HHHhcccCCC
Confidence 234578999999999878888777666655442 2 289999999999822 1334444333 3333222221
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
......|+..+.++.++++.+......
T Consensus 319 -----~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 319 -----APIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred -----CceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 123367888999999999988887654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-15 Score=133.11 Aligned_cols=177 Identities=18% Similarity=0.160 Sum_probs=106.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee-eEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
-|+|||.+|||||||||+|++... ..+..+.|+. ..+..+.+.+...++|+||||+.........+...+.+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~---~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~---- 233 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP---KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLK---- 233 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc---cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHH----
Confidence 699999999999999999998754 2344444443 33444444234578999999997633222223444443
Q ss_pred cCCCccEEEEEeecCCCC----C-HHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 100 AKDGIHAFLVVFSVTNRF----S-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~----~-~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
...+++++++|+|++ .+ . .....+++.+......-...|+++|+||+|+... ..+.+.+.. +..
T Consensus 234 ~i~radvlL~VVD~s-~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~--------l~~ 302 (390)
T PRK12298 234 HLERCRVLLHLIDIA-PIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKA--------IVE 302 (390)
T ss_pred HHHhCCEEEEEeccC-cccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHH--------HHH
Confidence 345779999999976 22 1 2223344444433211112489999999998754 444333333 222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 220 (363)
...... .....|+..+.++.+|++.|...+... ..+|..+.
T Consensus 303 ~~~~~~----~Vi~ISA~tg~GIdeLl~~I~~~L~~~-~~~~~~~~ 343 (390)
T PRK12298 303 ALGWEG----PVYLISAASGLGVKELCWDLMTFIEEN-PREEAEEA 343 (390)
T ss_pred HhCCCC----CEEEEECCCCcCHHHHHHHHHHHhhhC-cccCCccc
Confidence 212110 123568888899999999998888653 23344433
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-14 Score=119.76 Aligned_cols=151 Identities=24% Similarity=0.351 Sum_probs=103.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccc---cCC---CCCceeeEeEEEEee-CC--cEEEEEeCCCCCCCCCChH--
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS---AGS---SGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSE-- 87 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~---~~~---~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~-- 87 (363)
..+|+++|.+|.|||||+|+|+|....... ... ...++....+..... ++ ..++++|||||+|....+.
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w 102 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW 102 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence 469999999999999999999988432111 011 112333444444332 22 3678999999998654321
Q ss_pred H-----HHHHHHHHH----------hccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 88 F-----VGKEIVKCL----------GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 88 ~-----~~~~~~~~~----------~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
+ +..++..++ ...+.++|++||++..+ +.++.-+...++.+...+ |+|-|+.|.|.++
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~v------NlIPVI~KaD~lT 176 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRV------NLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhccc------CeeeeeeccccCC
Confidence 1 222222222 23346899999999865 788888877777666543 8999999999998
Q ss_pred cchhhHHHHhccCCCchHHHHHHhcCCceEE
Q 017924 152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVL 182 (363)
Q Consensus 152 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (363)
. +.|..+.+. +.+.+..+..++|.
T Consensus 177 ~--~El~~~K~~-----I~~~i~~~nI~vf~ 200 (373)
T COG5019 177 D--DELAEFKER-----IREDLEQYNIPVFD 200 (373)
T ss_pred H--HHHHHHHHH-----HHHHHHHhCCceeC
Confidence 8 888888887 88788877766664
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=121.49 Aligned_cols=164 Identities=21% Similarity=0.179 Sum_probs=93.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCc-EEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ-VVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.|+|||.+|||||||+|.|+|.... .....+ .|....+..+.. .+. .+.++||||+.+.......+...+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~~~~~-~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~---- 74 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-IADYPF-TTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLR---- 74 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-ccCCCc-cccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHH----
Confidence 6899999999999999999976531 111111 233333344444 444 88999999985422111112222222
Q ss_pred cCCCccEEEEEeecCCC-CCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 100 AKDGIHAFLVVFSVTNR-FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~-~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
....+|++++|+|+++. -+... ..+++.+..........++++|+||+|+... ....+.+.. ......
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~--------~~~~~~ 144 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFELLKE--------LLKELW 144 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHHHHHH--------HHhhCC
Confidence 22357999999999733 22222 2334444443211122489999999998755 333333222 222211
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
...+ ...|++.+.++.++++.+..
T Consensus 145 ~~~~-----~~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 145 GKPV-----FPISALTGEGLDELLRKLAE 168 (170)
T ss_pred CCCE-----EEEecCCCCCHHHHHHHHHh
Confidence 1111 24677788899999887654
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-15 Score=120.32 Aligned_cols=170 Identities=21% Similarity=0.242 Sum_probs=97.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+++|..|+|||||+|+|++.......... ..+.......+.. ++..+.++||||+.+.......+..........
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIA-GTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCC-CCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 68999999999999999999987532221211 2222222223333 566788999999876421111111111011122
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
.....|++++|+|+.+..+......+..+.. .+ .++++++||+|+.......++.+... +...+.....
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-~~----~~~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~- 149 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIAGLILE-EG----KALVIVVNKWDLVEKDSKTMKEFKKE-----IRRKLPFLDY- 149 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHHHHHHHHh-cC----CCEEEEEeccccCCccHHHHHHHHHH-----HHhhcccccC-
Confidence 3357899999999986666555444433322 12 38999999999875421223322222 2222221111
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
......|+..+.++.++++.+..
T Consensus 150 ----~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 150 ----APIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred ----CceEEEeccCCCCHHHHHHHHHH
Confidence 12235677788888888887654
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=124.66 Aligned_cols=165 Identities=13% Similarity=0.077 Sum_probs=98.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc-ccccccCCCCCceeeEeEEEEee--------------------------------
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVLK-------------------------------- 66 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~-------------------------------- 66 (363)
.+|+|+|++|+|||||+++|++.. .+.........+....+....+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 379999999999999999998772 22222223334444443333221
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-CCHHHHHHHHHHHHHhccccccceEEEEe
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~i~v~n 145 (363)
....++|+||||.. .+...+..+...+|++++|+|++.. ........+..+.. .+. .++++|+|
T Consensus 81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvN 145 (203)
T cd01888 81 LVRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQN 145 (203)
T ss_pred cccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEE
Confidence 02678999999932 2333444444578999999998732 23333344444322 222 27899999
Q ss_pred CCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 146 ~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
|+|+... ..+...+.. +...+..... ........|+..+.++.+|++.+.+.+.
T Consensus 146 K~Dl~~~--~~~~~~~~~-----i~~~~~~~~~---~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 146 KIDLVKE--EQALENYEQ-----IKKFVKGTIA---ENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred chhccCH--HHHHHHHHH-----HHHHHhcccc---CCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 9999754 333333333 3333332110 0112235688889999999998876543
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-15 Score=118.24 Aligned_cols=162 Identities=22% Similarity=0.184 Sum_probs=93.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH-HHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~~~ 99 (363)
+|+|+|.+|+|||||+|.|++...... .. ...|.........+ .+..++++||||+.+...... .+.......+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~-~~-~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~-- 76 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVA-PY-PFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAITAL-- 76 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccC-CC-CCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHHHH--
Confidence 799999999999999999998754111 11 11233333333333 567899999999854321111 1111111111
Q ss_pred cCCCccEEEEEeecCCCCC---HHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 100 AKDGIHAFLVVFSVTNRFS---QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
....|++++|+|+++..+ .....++..+...+. ..|+++|+||+|.... ..+.. ... .....
T Consensus 77 -~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~--~~~~~-~~~--------~~~~~ 141 (168)
T cd01897 77 -AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF--EDLSE-IEE--------EEELE 141 (168)
T ss_pred -HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch--hhHHH-HHH--------hhhhc
Confidence 123578999999874322 222344555554332 2389999999998755 33322 111 11111
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
... ....|++++.++.++++.+.+.+
T Consensus 142 ~~~------~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 142 GEE------VLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred cCc------eEEEEecccCCHHHHHHHHHHHh
Confidence 111 23678889999999999876653
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=118.87 Aligned_cols=169 Identities=15% Similarity=0.247 Sum_probs=99.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc-ccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~~ 94 (363)
...+|+|+|.+|+|||||+|.|++.. ........ +.|..... +.+ +..+.++||||+........ +....+.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~-~~t~~~~~--~~~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTP-GRTQLINF--FEV--NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCC-CceeEEEE--Eec--CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 44789999999999999999999864 21111111 12322222 222 46788999999765332211 1111222
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
..........+++++++|.+...+..+...++.+.. .+ .++++++||+|.... ...+..... +...+.
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~~----~~~iiv~nK~Dl~~~--~~~~~~~~~-----i~~~l~ 165 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-YG----IPVLIVLTKADKLKK--GERKKQLKK-----VRKALK 165 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-cC----CcEEEEEECcccCCH--HHHHHHHHH-----HHHHHH
Confidence 222223345678888888775666555544444432 22 278999999999865 434333333 333333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.....+ ...|+..+.++.++++.+...++
T Consensus 166 ~~~~~~------~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 166 FGDDEV------ILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred hcCCce------EEEEcCCCCCHHHHHHHHHHHhc
Confidence 221222 25677788899999998877664
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.2e-16 Score=124.57 Aligned_cols=175 Identities=17% Similarity=0.169 Sum_probs=106.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+..+|+|+|.+|+|||||||+|++..... .+.-+++++...+.....++..++++||||+++....+.+....+...+
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~--v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKE--VSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCce--eeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 44688899999999999999999544311 2212223333333332226788999999999997655554444455544
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcc----------hhhHHHHhccCCCc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH----------EKTLEDFLGHECPK 167 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~----------~~~l~~~~~~~~~~ 167 (363)
.+.|.++++++++++.-+-+...++.+.....+ +++++++|.+|..... ...+.+++..
T Consensus 116 ----~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~---- 184 (296)
T COG3596 116 ----PKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE---- 184 (296)
T ss_pred ----hhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhccccccccccCCCCHHHHHHHHH----
Confidence 466889999998766656666666666655443 3899999999987551 1123333322
Q ss_pred hHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
-.+..+.++.........+.....++.+|...+-..+.
T Consensus 185 ----k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 185 ----KAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred ----HHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 22222222222333333345566777777776666554
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-15 Score=117.22 Aligned_cols=155 Identities=23% Similarity=0.245 Sum_probs=96.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+.+|+++|++|+|||||+|+|++......... .+.+.......+.+ .+..++++||||+.+.... ..........
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~---~~~~~~~~~~ 75 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDI-AGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDE---IEKIGIERAR 75 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCC-CCCccceEEEEEEe-CCEEEEEEECCCcCCCcch---HHHHHHHHHH
Confidence 46899999999999999999998763111111 22233333333344 5678899999998764322 1111122222
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
....++|++++|+|+++..+..+...+.. ..+ .++++|+||+|.... ... . ......
T Consensus 76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~----~~vi~v~nK~D~~~~--~~~-----~---------~~~~~~ 132 (157)
T cd04164 76 EAIEEADLVLFVIDASRGLDEEDLEILEL---PAD----KPIIVVLNKSDLLPD--SEL-----L---------SLLAGK 132 (157)
T ss_pred HHHhhCCEEEEEEECCCCCCHHHHHHHHh---hcC----CCEEEEEEchhcCCc--ccc-----c---------cccCCC
Confidence 34457899999999986666655544433 222 389999999998755 211 0 011122
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.++ ..|+.++.++.++++.|...
T Consensus 133 ~~~------~~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 133 PII------AISAKTGEGLDELKEALLEL 155 (157)
T ss_pred ceE------EEECCCCCCHHHHHHHHHHh
Confidence 222 45667788999998887664
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-14 Score=134.14 Aligned_cols=174 Identities=16% Similarity=0.184 Sum_probs=105.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH-
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC- 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~- 96 (363)
...+|+|||.+|+|||||+|.|+|..........+ .|.+.....+.+ ++..+.++||||+......... ...+...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~g-tT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~~~-~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAG-TTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQASG-HEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC-ccCCcceEEEEE-CCEEEEEEECCCccccccccch-HHHHHHHH
Confidence 35799999999999999999999876422222222 233332333344 6778889999997532111100 1111111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..++|++++|+|++...+..+...+..+.. .+ .++++|+||+|+... .....+... +...+...
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~-~~----~piIiV~NK~Dl~~~--~~~~~~~~~-----i~~~l~~~ 354 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE-AG----RALVLAFNKWDLVDE--DRRYYLERE-----IDRELAQV 354 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECcccCCh--hHHHHHHHH-----HHHhcccC
Confidence 1123457899999999987788777766555443 12 389999999998754 221111111 11111111
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
. +.....+|++.+.++.+++..+.......
T Consensus 355 ~-----~~~~~~~SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 355 P-----WAPRVNISAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred C-----CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 1 11223578999999999999998877653
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.5e-15 Score=117.79 Aligned_cols=134 Identities=17% Similarity=0.268 Sum_probs=82.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCC-CCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH-
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV- 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~- 94 (363)
....+|+|+|.+|+|||||+|.|++.... ...+.. +.|.....+ .. + ..+.++||||+......... ...+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~-~~~~~~~~~t~~~~~~--~~-~-~~~~liDtpG~~~~~~~~~~-~~~~~~ 89 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKL-ARTSKTPGRTQLINFF--EV-N-DGFRLVDLPGYGYAKVSKEE-KEKWQK 89 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCc-ccccCCCCcceEEEEE--Ee-C-CcEEEEeCCCCccccCChhH-HHHHHH
Confidence 44579999999999999999999987421 111111 123333322 22 2 36889999998764322211 11221
Q ss_pred --HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 95 --KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 95 --~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
..+.......+++++|+|++++++..+...+..+... + .|+++++||+|.... ...+..+..
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-~----~pviiv~nK~D~~~~--~~~~~~~~~ 153 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-G----IPVLIVLTKADKLKK--SELNKQLKK 153 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccCCH--HHHHHHHHH
Confidence 1112223356899999999877887777666655432 2 389999999998755 444444444
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.2e-15 Score=125.38 Aligned_cols=153 Identities=23% Similarity=0.279 Sum_probs=98.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccC------CCCCceeeEeEE--EEeeCC--cEEEEEeCCCCCCCCCChHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKT--TVLKDG--QVVNVIDTPGLFDLSAGSEF 88 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~------~~~~t~~~~~~~--~~~~~~--~~~~l~DtpG~~~~~~~~~~ 88 (363)
..+|+|+|.+|+|||||+|+|++...+..... ....|+...... +.. ++ ..++++||||+++..... .
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpGfgd~~~~~-~ 81 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTPGFGDNINNS-D 81 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecCCccccccch-h
Confidence 36999999999999999999998876433211 112233222222 222 34 368999999998764322 2
Q ss_pred HHHHHHH--------HH----------hccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCC
Q 017924 89 VGKEIVK--------CL----------GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (363)
Q Consensus 89 ~~~~~~~--------~~----------~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~ 149 (363)
..+.+.. ++ .....++|+++|+++.+ +.+...+...++.+.. . .|+++|+||+|.
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~----~--v~vi~VinK~D~ 155 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK----R--VNIIPVIAKADT 155 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc----c--CCEEEEEECCCc
Confidence 2222221 11 12234689999999876 4566777666666643 2 289999999999
Q ss_pred CCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCC
Q 017924 150 LEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (363)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (363)
+.. ..+..+... +.+.+...+..++.|...
T Consensus 156 l~~--~e~~~~k~~-----i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 156 LTP--EELKEFKQR-----IMEDIEEHNIKIYKFPED 185 (276)
T ss_pred CCH--HHHHHHHHH-----HHHHHHHcCCceECCCCC
Confidence 865 555555555 667777777777766543
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-15 Score=117.48 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=96.5
Q ss_pred EEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCC
Q 017924 23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD 102 (363)
Q Consensus 23 ~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
+|+|.+|+|||||+|.|++........ ..+.|.......... .+..+.++||||+.+... .+.+.+.........
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVED-TPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecC-CCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 589999999999999999875321112 122333344444444 677899999999876421 223334333333445
Q ss_pred CccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEE
Q 017924 103 GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL 182 (363)
Q Consensus 103 ~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (363)
.+|++++|+++.+.++..+...+..+... + .++++|+||+|.... .... . .+...+.
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-~----~piiiv~nK~D~~~~--~~~~---~---------~~~~~~~---- 132 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS-K----KPVILVVNKVDNIKE--EDEA---A---------EFYSLGF---- 132 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc-C----CCEEEEEECcccCCh--HHHH---H---------HHHhcCC----
Confidence 78999999998756665555555555432 2 389999999998765 2221 1 1111111
Q ss_pred ecCCCcccccchhHHHHHHHHHHH
Q 017924 183 FDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
......|+..+.++.++++.+.+
T Consensus 133 -~~~~~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 133 -GEPIPISAEHGRGIGDLLDAILE 155 (157)
T ss_pred -CCeEEEecccCCCHHHHHHHHHh
Confidence 01234677778899998887654
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-15 Score=121.13 Aligned_cols=165 Identities=20% Similarity=0.286 Sum_probs=107.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccc----------------ccCCCCCceeeEeEEEE--eeCCcEEEEEeCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA----------------SAGSSGVTKTCEMKTTV--LKDGQVVNVIDTPGLF 80 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~----------------~~~~~~~t~~~~~~~~~--~~~~~~~~l~DtpG~~ 80 (363)
-.+|+|+|+.|+|||||+++|++...... .......|.......+. . .+..++++||||..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGHE 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSSH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeeccccccc
Confidence 37999999999999999999985542100 01113445555555555 4 78899999999953
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHH
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF 160 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~ 160 (363)
+ +...+..+...+|++++|+|+...+.......+..+... +. |+++++||+|... ..+.+.
T Consensus 82 ~-----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-~~----p~ivvlNK~D~~~---~~~~~~ 142 (188)
T PF00009_consen 82 D-----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL-GI----PIIVVLNKMDLIE---KELEEI 142 (188)
T ss_dssp H-----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-T-----SEEEEEETCTSSH---HHHHHH
T ss_pred c-----------eeecccceecccccceeeeeccccccccccccccccccc-cc----ceEEeeeeccchh---hhHHHH
Confidence 3 222233334567999999999867887777777776553 22 7999999999983 344444
Q ss_pred hccCCCchHH-HHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 161 LGHECPKPLK-EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 161 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+.. +. .++......-..+-.....|+..+.++.+|++.+...+
T Consensus 143 ~~~-----~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 143 IEE-----IKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHH-----HHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHH-----HHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 444 33 33333321100000122568888999999999887754
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.8e-15 Score=120.43 Aligned_cols=163 Identities=24% Similarity=0.214 Sum_probs=95.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|.+|||||||+|.|++...+... ....|.......+.+.+...+.++||||+.+... ......+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~ 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED--QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRST 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCC--ccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHH
Confidence 33479999999999999999999987532211 1122333333344442334889999999854321 1122223222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHH-HHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
+ .....+|++++|+|+++..+..... +...+......+ .++++|+||+|+... .... . ....
T Consensus 115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~~--~~~~----~--------~~~~ 177 (204)
T cd01878 115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLDD--EELE----E--------RLEA 177 (204)
T ss_pred H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCCh--HHHH----H--------Hhhc
Confidence 2 2234689999999997454444333 233333322112 389999999998755 2221 1 1111
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.... ....|+..+.++.++++.|..
T Consensus 178 ~~~~------~~~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 178 GRPD------AVFISAKTGEGLDELLEAIEE 202 (204)
T ss_pred CCCc------eEEEEcCCCCCHHHHHHHHHh
Confidence 1111 235677888899999887654
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-14 Score=129.34 Aligned_cols=178 Identities=19% Similarity=0.259 Sum_probs=115.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+++|.+|+|||||+|+|+|..... ...-++|++.....+.. .++.+.++|.||..+....+.+ +.+.+.+.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~V--gNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~D--E~Var~~l 77 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKV--GNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSED--EKVARDFL 77 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCcee--cCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCch--HHHHHHHH
Confidence 3579999999999999999999998633 33345787777777777 7888999999999876543322 23333222
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
. ...+|+++.|+|++ ++..+-.-.++++. +|. |+++++|++|.....+..++ ...+-+..+-
T Consensus 78 l-~~~~D~ivnVvDAt-nLeRnLyltlQLlE--~g~----p~ilaLNm~D~A~~~Gi~ID----------~~~L~~~LGv 139 (653)
T COG0370 78 L-EGKPDLIVNVVDAT-NLERNLYLTLQLLE--LGI----PMILALNMIDEAKKRGIRID----------IEKLSKLLGV 139 (653)
T ss_pred h-cCCCCEEEEEcccc-hHHHHHHHHHHHHH--cCC----CeEEEeccHhhHHhcCCccc----------HHHHHHHhCC
Confidence 2 35789999999998 55444333333332 233 89999999998765222222 2222233333
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHHHcCCC---CCCHHHHHhHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ---PYTDELKRGAT 225 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~~~~~~~~ 225 (363)
... .+++..+.+++++++.+.+........ .|...+.+...
T Consensus 140 PVv------~tvA~~g~G~~~l~~~i~~~~~~~~~~~~~~y~~~ie~~i~ 183 (653)
T COG0370 140 PVV------PTVAKRGEGLEELKRAIIELAESKTTPREVDYGEEIEEEIK 183 (653)
T ss_pred CEE------EEEeecCCCHHHHHHHHHHhccccccccccccchHHHHHHH
Confidence 333 567778899999999988876543331 25554444333
|
|
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.2e-14 Score=118.87 Aligned_cols=155 Identities=21% Similarity=0.307 Sum_probs=105.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccc-----ccCCCCCceeeEeEEEEee-CC--cEEEEEeCCCCCCCCCChH---
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSE--- 87 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~-----~~~~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~--- 87 (363)
..+++++|.+|.|||||||+|++...... .......|+.......... ++ ..++++||||++|....+.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 36999999999999999999998854321 1111212333333333332 22 3678999999998543321
Q ss_pred ----HHHHHHHHHHh---------ccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcc
Q 017924 88 ----FVGKEIVKCLG---------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (363)
Q Consensus 88 ----~~~~~~~~~~~---------~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~ 153 (363)
.+..++..++. ..+.++|++||++... +.+..-+...++.+...+ |+|-|+.|.|.++.
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~v------NiIPVI~KaD~lT~- 173 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKV------NLIPVIAKADTLTK- 173 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccc------cccceeeccccCCH-
Confidence 23344444432 2234899999999865 568888877766665432 89999999999988
Q ss_pred hhhHHHHhccCCCchHHHHHHhcCCceEEecCC
Q 017924 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (363)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (363)
+.+..+... +...+.......+.|...
T Consensus 174 -~El~~~K~~-----I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 174 -DELNQFKKR-----IRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred -HHHHHHHHH-----HHHHHHHcCcceecCCCC
Confidence 888888777 777788877777777654
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-14 Score=123.92 Aligned_cols=167 Identities=17% Similarity=0.124 Sum_probs=100.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCC-ceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.|+|||.+|||||||||+|++... .....+. |....+..+.+.++..++++|+||+.........+...+.+.
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~---~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrh--- 233 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKP---KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKH--- 233 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCC---ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHH---
Confidence 699999999999999999997643 1222222 444444444453567899999999875332222333344443
Q ss_pred cCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHH-HHhccCCCchHHHHHHhcC
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE-DFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~ 177 (363)
..+.+++++|+|+++.-+..+. .+...+......-...++++|+||+|+... .... .... ......+
T Consensus 234 -ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~--~~~~~~~~~--------~~~~~~~ 302 (335)
T PRK12299 234 -IERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE--EEEREKRAA--------LELAALG 302 (335)
T ss_pred -hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc--hhHHHHHHH--------HHHHhcC
Confidence 3467999999999833333333 333344333211122489999999998754 2221 1111 1122222
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
..+ ...|+..+.++.+|++.|...+..
T Consensus 303 ~~i------~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 303 GPV------FLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred CCE------EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 222 256788889999999988776643
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.4e-13 Score=120.86 Aligned_cols=121 Identities=12% Similarity=0.057 Sum_probs=75.7
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCC
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D 148 (363)
..++|+||||++.... ..+.+.+.. ....+|+++||+|+...++..+...++.+... ++. .|+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~--~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQS--VPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCC--CCEEEEEEccc
Confidence 4678999999986421 123333333 34578999999999856788888777777653 321 28999999999
Q ss_pred CCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 149 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.........+.+... +...+..... .|......|+..+.+++.|++.|..
T Consensus 301 l~dreeddkE~Lle~-----V~~~L~q~~i---~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 301 QQDRNSDDADQVRAL-----ISGTLMKGCI---TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCcccchHHHHHHH-----HHHHHHhcCC---CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 874311112222222 2222222111 2334456789999999999987665
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-15 Score=120.05 Aligned_cols=164 Identities=21% Similarity=0.189 Sum_probs=97.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccC--------------CCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCCh
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS 86 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 86 (363)
+|+|+|..|+|||||+|+|++......... ....+.........+ .+..+.++||||..+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~---- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF---- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence 589999999999999999987754211100 112233333333344 4678889999996541
Q ss_pred HHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCC
Q 017924 87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (363)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~ 166 (363)
... .......+|++++|+|..+.........+..+.. . ..++++++||+|.... ..+......
T Consensus 76 ---~~~----~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-~----~~~i~iv~nK~D~~~~--~~~~~~~~~--- 138 (189)
T cd00881 76 ---SSE----VIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-G----GLPIIVAINKIDRVGE--EDLEEVLRE--- 138 (189)
T ss_pred ---HHH----HHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-C----CCCeEEEEECCCCcch--hcHHHHHHH---
Confidence 111 1222346799999999875555555555544433 1 2389999999999864 333333333
Q ss_pred chHHHHHHhcCCc--------eEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 167 KPLKEILQLCDNR--------CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 167 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+...+...+.. ..........|+..+.++.++++.+...+
T Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 139 --IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred --HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 33333322210 00112234668888889999988876654
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=5e-14 Score=128.16 Aligned_cols=158 Identities=22% Similarity=0.260 Sum_probs=98.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+.+|+|+|.+|+|||||+|.|+|..........+ .|.+.....+.+ ++..+.++||||+.+. ...+...-....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~g-tT~d~~~~~i~~-~g~~i~l~DT~G~~~~---~~~ie~~gi~~~ 288 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAG-TTRDVIEEHINL-DGIPLRLIDTAGIRET---DDEVEKIGIERS 288 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC-cccccEEEEEEE-CCeEEEEEeCCCCCCC---ccHHHHHHHHHH
Confidence 45799999999999999999999876411112222 233333334444 6788999999998652 221111111112
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
......+|++++|+|+++..+..+...+.. .. . .|+++|+||+|+... .... . ...
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~~-~--~piiiV~NK~DL~~~--~~~~----~-----------~~~ 344 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILEE----LK-D--KPVIVVLNKADLTGE--IDLE----E-----------ENG 344 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHHh----cC-C--CCcEEEEEhhhcccc--chhh----h-----------ccC
Confidence 233457899999999985655554433332 11 1 389999999998644 1111 0 001
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.. ....|++.+.++.+|++.+...+..
T Consensus 345 ~~------~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 345 KP------VIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred Cc------eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 11 2256888889999999999887754
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=127.61 Aligned_cols=162 Identities=23% Similarity=0.189 Sum_probs=98.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|||.+|||||||+|+|+|...+... ....|.+.....+.+.++..+.++||+|+... .+. ...+.+...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~--~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~-l~~-~lie~f~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAAD--QLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD-LPH-ELVAAFRATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeecc--CCccccCCEEEEEEeCCCceEEEEecCccccc-CCH-HHHHHHHHHH
Confidence 3479999999999999999999988642211 11223344444444535678999999998431 112 2223343332
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHH-HHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAV-HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
. ....+|++++|+|+++..+..+...+ ..+..+ +. ...|+++|+||+|+... ..+.. + ..
T Consensus 264 e-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~--~~v~~---------~---~~-- 324 (351)
T TIGR03156 264 E-EVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE--PRIER---------L---EE-- 324 (351)
T ss_pred H-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh--HhHHH---------H---Hh--
Confidence 2 34578999999999855544443332 333332 21 12389999999998743 22211 0 00
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.. ......|++++.++.+|++.|...
T Consensus 325 ~~-----~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 325 GY-----PEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CC-----CCEEEEEccCCCCHHHHHHHHHhh
Confidence 00 012356888899999999887653
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.8e-15 Score=133.70 Aligned_cols=159 Identities=21% Similarity=0.256 Sum_probs=107.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|||++|+|||||+|.|+|........ ..++|.+.......+ ++..+.++||||+... ...+.+.+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~-~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSD-TPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecC-CCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 58999999999999999999876311112 223455555555666 7888999999998642 233445555555556
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCce
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 180 (363)
...+|++++|+|+...++..+....+.+... + .++++|+||+|.... ... ..++. ..+.
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-~----~piilVvNK~D~~~~--~~~-----------~~~~~-~lg~-- 134 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-G----KPVILVANKIDGKKE--DAV-----------AAEFY-SLGF-- 134 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-C----CCEEEEEECccCCcc--ccc-----------HHHHH-hcCC--
Confidence 6788999999999867888887777776653 3 389999999998754 210 11111 1111
Q ss_pred EEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
......|+..+.++.++++.+...+
T Consensus 135 ---~~~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 135 ---GEPIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred ---CCeEEEeCCcCCChHHHHHHHHHhc
Confidence 1123557777888888888877665
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-14 Score=116.07 Aligned_cols=119 Identities=20% Similarity=0.214 Sum_probs=75.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhccccccccc-CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|.+|+|||||+|+|+|......+. ..+...+......+.......++++||||+.+...... ++.+.+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~----~~l~~~- 76 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPD----DYLEEM- 76 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHH----HHHHHh-
Confidence 589999999999999999999865321111 11111011111111111234688999999886543322 222222
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
.+.+.|+++++.+ .+++..+...++.+... +. ++++|+||+|...
T Consensus 77 -~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~~----~~ilV~nK~D~~~ 121 (197)
T cd04104 77 -KFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-GK----KFYFVRTKVDRDL 121 (197)
T ss_pred -CccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-CC----CEEEEEecccchh
Confidence 2446788888754 37888888888888764 43 7999999999864
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-14 Score=124.35 Aligned_cols=165 Identities=18% Similarity=0.203 Sum_probs=98.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.|+|||.+|||||||+|+|++...- ....+ .|....+..+.+.+...++++||||+.........+...+.+.+
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~---va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi-- 233 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPK---IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI-- 233 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCcc---ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--
Confidence 7999999999999999999976431 22222 24444455555523478999999998653222223344444433
Q ss_pred cCCCccEEEEEeecCCC---CCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 100 AKDGIHAFLVVFSVTNR---FSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~---~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.+++++++|+|+++. -...+. .+.+.+......-...++++|+||+|+... ..+++..+. +...
T Consensus 234 --erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~--------l~~~ 301 (329)
T TIGR02729 234 --ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLKE--------LKKA 301 (329)
T ss_pred --HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHHH--------HHHH
Confidence 467999999998732 122222 233333332111123489999999998755 333333332 2222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..+ ...|+..+.++.++++.+...+
T Consensus 302 ~~~~v------i~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 302 LGKPV------FPISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCCcE------EEEEccCCcCHHHHHHHHHHHh
Confidence 22222 2567788889999998877653
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=133.27 Aligned_cols=160 Identities=23% Similarity=0.217 Sum_probs=103.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|||.+|+|||||+|.|+|......... .++|.+.......+ ++..+.++||||+... ...+...+......
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~-~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~~~~ 113 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDV-PGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQAEV 113 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCC-CCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHHHHH
Confidence 5899999999999999999998754222222 23444444444455 6778999999997632 12233344444444
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
++..+|++++|+|+++..+..+..+...+... + .|+++|+||+|..... .... ..... +..
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-~----~piilV~NK~Dl~~~~-~~~~------------~~~~~-g~~ 174 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATATDEAVARVLRRS-G----KPVILAANKVDDERGE-ADAA------------ALWSL-GLG 174 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccCCccc-hhhH------------HHHhc-CCC
Confidence 55678999999999877777666666665532 2 3899999999986431 0111 11111 111
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+|+..+.++.+|++.+...+
T Consensus 175 -----~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 175 -----EPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred -----CeEEEEcCCCCCcHHHHHHHHhhc
Confidence 112568888899999988877655
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.9e-15 Score=124.09 Aligned_cols=153 Identities=23% Similarity=0.302 Sum_probs=88.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhccccccccc------CCCCCceeeEeEEEEee-CC--cEEEEEeCCCCCCCCCChHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASA------GSSGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSEFVG 90 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~------~~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~~~ 90 (363)
.+|+|+|.+|+|||||||+|++...+.... .....+........... ++ ..++++||||+++.... ....
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n-~~~~ 83 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDN-SDCW 83 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTH-CHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccc-hhhh
Confidence 689999999999999999999887644320 01111222222222221 22 36789999999875432 2222
Q ss_pred HHH--------HHHH---------hccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 91 KEI--------VKCL---------GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 91 ~~~--------~~~~---------~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+ ..++ .....++|++||+++.+ +++...+...++.+... + |+|-|+.|.|.++.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~----v--NvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR----V--NVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT----S--EEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc----c--cEEeEEecccccCH
Confidence 222 2222 12345789999999975 67888887766665543 2 89999999999987
Q ss_pred chhhHHHHhccCCCchHHHHHHhcCCceEEecCC
Q 017924 153 HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (363)
Q Consensus 153 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (363)
+.+..+... +...+...+...+.|...
T Consensus 158 --~el~~~k~~-----i~~~l~~~~I~~f~f~~~ 184 (281)
T PF00735_consen 158 --EELQAFKQR-----IREDLEENNIKIFDFPED 184 (281)
T ss_dssp --HHHHHHHHH-----HHHHHHHTT--S------
T ss_pred --HHHHHHHHH-----HHHHHHHcCceeeccccc
Confidence 888877776 777777777777666543
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-14 Score=114.40 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=79.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccc--------------ccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (363)
..+|+++|+.|+|||||+++|++.....+ .....+.|.......+.+ ++..++++||||+.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~--- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD--- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH---
Confidence 47899999999999999999985411000 011234454444444444 677889999999643
Q ss_pred ChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
+...+..+...+|++++|+|+.......+...+..+... +.. ++++++||+|+...
T Consensus 78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~~---~iIvviNK~D~~~~ 133 (195)
T cd01884 78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GVP---YIVVFLNKADMVDD 133 (195)
T ss_pred --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---cEEEEEeCCCCCCc
Confidence 333333444578999999999756777776776666543 321 47788999998743
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-14 Score=117.16 Aligned_cols=168 Identities=18% Similarity=0.221 Sum_probs=96.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc---cccc--ccCCCCCceeeEeEEEEee-------------CCcEEEEEeCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK---AFKA--SAGSSGVTKTCEMKTTVLK-------------DGQVVNVIDTPGLFD 81 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~---~~~~--~~~~~~~t~~~~~~~~~~~-------------~~~~~~l~DtpG~~~ 81 (363)
.+|+|+|+.|+|||||++.|++.. .+.. .....+.|.........+. .+..++++||||...
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 379999999999999999998631 1100 0111223433333333331 256889999999632
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHh
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~ 161 (363)
+.+.+......+|++++|+|+...........+... ...+ .++++++||+|.... ...+..+
T Consensus 81 -----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~-~~~~----~~~iiv~NK~Dl~~~--~~~~~~~ 142 (192)
T cd01889 81 -----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIG-EILC----KKLIVVLNKIDLIPE--EERERKI 142 (192)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHH-HHcC----CCEEEEEECcccCCH--HHHHHHH
Confidence 222222333467999999998755544444433332 2223 289999999998754 3333333
Q ss_pred ccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.. ..+.+...+...+.. .......|+..+.++.+|++.+...+.
T Consensus 143 ~~-~~~~l~~~~~~~~~~---~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 143 EK-MKKKLQKTLEKTRFK---NSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HH-HHHHHHHHHHhcCcC---CCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 22 000122222111110 011236788899999999999887664
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-14 Score=135.52 Aligned_cols=173 Identities=17% Similarity=0.169 Sum_probs=105.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH-
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC- 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~- 96 (363)
...+|+|+|.+|+|||||+|.|+|.......... +.|.+.....+.+ ++..+.++||||+......... .+.+...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~-gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~~~-~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLA-GTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKLTG-AEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCC-CCCcCcceeEEEE-CCCEEEEEECCCcccCcccchh-HHHHHHHH
Confidence 3479999999999999999999988641111222 2233333333444 6778889999998642211110 1111111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...+|++++|+|++...+..+...+..+... + .++++|+||||+... ...+.+... +...+...
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~-~----~piIiV~NK~DL~~~--~~~~~~~~~-----~~~~l~~~ 593 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKVMSMAVDA-G----RALVLVFNKWDLMDE--FRRQRLERL-----WKTEFDRV 593 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEEchhcCCh--hHHHHHHHH-----HHHhccCC
Confidence 12334678999999999877887777666554431 2 389999999998754 222211111 11111110
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+......|++++.++.+|++.+......
T Consensus 594 -----~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 594 -----TWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred -----CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 11122356889999999999998887755
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-14 Score=113.22 Aligned_cols=161 Identities=16% Similarity=0.137 Sum_probs=93.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+|+|+|..|+|||||+|+|++... .. ......|........... .+..++++||||... +.....
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~-~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~~ 68 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNV-AA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMRA 68 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccc-cc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHHH
Confidence 699999999999999999986643 11 112223333333334331 256889999999543 111122
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH-HhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~ 177 (363)
.....+|++++|+|+++.........+..+.. .+ .|+++|+||+|+.......+...+.. +.... ...+
T Consensus 69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~~----~p~ivv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~ 138 (168)
T cd01887 69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKA-AN----VPFIVALNKIDKPNANPERVKNELSE-----LGLQGEDEWG 138 (168)
T ss_pred HHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-cC----CCEEEEEEceecccccHHHHHHHHHH-----hhcccccccc
Confidence 23357899999999974444444444544433 22 38999999999874311122222211 11000 0111
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+ .....|+..+.++.++++.+....
T Consensus 139 ~~~----~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 139 GDV----QIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred CcC----cEEEeecccCCCHHHHHHHHHHhh
Confidence 111 123567788889999999887654
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=131.02 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=103.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|||.+|+|||||+|.|+|......... .++|.+.......+ ++..+.++||||+.+.. ..+...+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~-~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADT-PGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCC-CCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 4799999999999999999998764222222 23444445555555 67889999999987621 1233444444444
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
+...+|++++|+|+.+.++..+.....++... + .++++|+||+|..... ..+.+ +.. .+.
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-~----~piilv~NK~D~~~~~-~~~~~------------~~~-lg~- 136 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-N----KPVILVVNKVDGPDEE-ADAYE------------FYS-LGL- 136 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCccch-hhHHH------------HHh-cCC-
Confidence 55678999999999867777777666666653 3 3899999999965320 11111 111 111
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
......|+..+.++.++++.+..
T Consensus 137 ----~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 137 ----GEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred ----CCCEEEEeeCCCCHHHHHHHHHh
Confidence 11224577778888888877765
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-14 Score=118.71 Aligned_cols=155 Identities=12% Similarity=0.094 Sum_probs=90.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccc-----------------------------cCCCCCceeeEeEEEEeeCCcEE
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTVLKDGQVV 71 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 71 (363)
+|+|+|+.|+|||||++.|++....... ....+.|.+.....+.+ ++..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 5899999999999999999754321110 00133444444445555 67889
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 72 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
+++||||..+ +...+..+...+|++++|+|++..........+..+.. ++. .++++|+||+|...
T Consensus 80 ~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~---~~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGI---RHVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCC---CcEEEEEEchhccc
Confidence 9999999532 21222223457899999999975555544444443332 332 25778899999875
Q ss_pred cchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHH
Q 017924 152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (363)
Q Consensus 152 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (363)
.....++..... ++.++...+.... .....|+..+.++.+
T Consensus 145 ~~~~~~~~i~~~-----~~~~~~~~~~~~~---~ii~iSA~~g~ni~~ 184 (208)
T cd04166 145 YSEEVFEEIVAD-----YLAFAAKLGIEDI---TFIPISALDGDNVVS 184 (208)
T ss_pred CCHHHHHHHHHH-----HHHHHHHcCCCCc---eEEEEeCCCCCCCcc
Confidence 322333334444 5555555443210 112456666656553
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-14 Score=112.12 Aligned_cols=157 Identities=16% Similarity=0.181 Sum_probs=91.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+.+... .. ....+...+.....+.+ ++ ..+.++||||... +....
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~~~ 69 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTF-SE-RQGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQER-----------FRTIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-cc-cCCCccceEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 6999999999999999999975432 11 11112222233333444 33 3678999999422 22223
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...|++++++|+++.-+-.. ..++..+....... .|+++|.||+|+........++ ...+....
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 138 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEEQREVLFEE---------ACTLAEKN 138 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHHH---------HHHHHHHc
Confidence 334457899999999983333222 33444444432222 3799999999986441111111 22233332
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
+...+ ...|++.+.++.+++..+.+
T Consensus 139 ~~~~~-----~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 139 GMLAV-----LETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred CCcEE-----EEEECCCCCCHHHHHHHHHH
Confidence 22122 25678888899998887654
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.4e-14 Score=110.76 Aligned_cols=163 Identities=21% Similarity=0.261 Sum_probs=93.0
Q ss_pred EEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCCh---HHHHHHHHHHHh
Q 017924 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS---EFVGKEIVKCLG 98 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~---~~~~~~~~~~~~ 98 (363)
|+|+|.+|||||||+|.|++..... ...+..........+.. ...++++||||+....... ......+..++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~--~~~~~~~~t~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~- 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLA--RTSKTPGKTQLINFFNV--NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL- 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcee--eecCCCCcceeEEEEEc--cCeEEEecCCCccccccCHHHHHHHHHHHHHHH-
Confidence 7999999999999999999433211 11122111122222222 3378899999987753321 11111122222
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH-hc-
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ-LC- 176 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~-~~- 176 (363)
.....++.++++++.+..........++++... + .++++++||+|.... ......... +...+. ..
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~~--~~~~~~~~~-----~~~~l~~~~~ 144 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLKK--SELAKALKE-----IKKELKLFEI 144 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCCh--HHHHHHHHH-----HHHHHHhccC
Confidence 233456888889888745555555555555442 2 389999999998755 333333322 333332 11
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
...++ ..|+.++.++.++++.|.+.
T Consensus 145 ~~~~~------~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 145 DPPII------LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCceE------EEecCCCCCHHHHHHHHHHh
Confidence 12222 45666778888888877654
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-14 Score=114.47 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=89.7
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
......+|+|+|.+|+|||||++.|++..... ...|....+..+.+ ++..+.++||||... +.
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-----~~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~~ 72 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDIDT-----ISPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------LR 72 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEEEE-CCEEEEEEECCCCHH-----------HH
Confidence 34456899999999999999999999774311 11122222233334 567789999999543 12
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHH-hccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNL-FGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
......+...|++++|+|.+..-+-.+ ...+..+... ... ..++++|.||+|+... ...++ +...
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~--~~~~~---------~~~~ 139 (173)
T cd04154 73 PYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLA--GATLLILANKQDLPGA--LSEEE---------IREA 139 (173)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECcccccC--CCHHH---------HHHH
Confidence 222233467899999999873322111 1222222111 111 2389999999998643 21111 1111
Q ss_pred HHhc---CCceEEecCCCcccccchhHHHHHHHHH
Q 017924 173 LQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLV 204 (363)
Q Consensus 173 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l 204 (363)
+... ..... ....|+..+.++.++++.+
T Consensus 140 ~~~~~~~~~~~~----~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 140 LELDKISSHHWR----IQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred hCccccCCCceE----EEeccCCCCcCHHHHHHHH
Confidence 1110 11111 2366888899999988865
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=118.82 Aligned_cols=194 Identities=18% Similarity=0.172 Sum_probs=121.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH-HHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~ 97 (363)
.++|+|||.+|+|||||.|.+.|+.. +..+....|+++.+-.+...+...+.|+||||+........ -....+....
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv--~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKV--SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCcc--ccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 37999999999999999999999988 44677778888888887776788999999999876432211 1111122222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHH--HhccC-CCchHHHHHH
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED--FLGHE-CPKPLKEILQ 174 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~--~~~~~-~~~~~~~~~~ 174 (363)
..+...+|++++++|+++.-..-.-+.|..+.....- +.++|.||+|.....+..++- .+.+. ......++-+
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~i----ps~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKI----PSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcC----CceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 3444578999999998733333344556666665433 789999999987653222221 11110 0000001111
Q ss_pred hcCCc-----------eEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCC-CCHHH
Q 017924 175 LCDNR-----------CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQP-YTDEL 220 (363)
Q Consensus 175 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~ 220 (363)
.+... .--|..++..|+..++++.+|.++|...... +.+ |..++
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~--gpW~y~a~i 281 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP--GPWKYPADI 281 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC--CCCCCCccc
Confidence 11110 1114455677899999999999998776644 333 55544
|
|
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=115.06 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=87.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccc--cCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKAS--AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+|+|+|..|+|||||++.|++......+ ......|+......+.+ ++..+.++||||... +.....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES-----------LRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 5899999999999999999864321000 11111233333334444 677889999999654 111222
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCc-chhhHHHHhccCCCchHHHHHHh
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
..+.+++++++|+|.+..-+. ......+..++.. ....|+++++||+|.... ....+..++.. ....
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~--------~~~~ 138 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERF--EESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQD--------KAEE 138 (167)
T ss_pred HHhCCCCEEEEEEECchHHHH--HHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhcc--------cccc
Confidence 334678999999998622111 1111222222211 112389999999998654 01122222222 1111
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
.+.... .....|++.+.++.++++.|.
T Consensus 139 ~~~~~~---~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 139 IGRRDC---LVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred ccCCce---EEEEeeCCCCcCHHHHHHHHh
Confidence 111110 123568888999999988764
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.8e-14 Score=125.98 Aligned_cols=167 Identities=16% Similarity=0.128 Sum_probs=99.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce-eeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..|+|||.+|||||||||.|++...- ....+.|+ ...+..+.+ .+..++|+||||+.........+...+.+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk---IadypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLr--- 232 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK---IADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLR--- 232 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc---ccccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHH---
Confidence 47999999999999999999976431 22223333 334444444 66789999999986532222223333433
Q ss_pred ccCCCccEEEEEeecCCC----CCHHHHH-HHHHHHHHhc---------cccccceEEEEeCCCCCCcchhhHHHHhccC
Q 017924 99 MAKDGIHAFLVVFSVTNR----FSQEEET-AVHRLPNLFG---------KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~----~~~~~~~-~l~~~~~~~~---------~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~ 164 (363)
...+++++++|+|++.. -...+.. +...+..+.. .-..+|++||+||+|+... ..+.+.+.
T Consensus 233 -hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~el~e~l~-- 307 (500)
T PRK12296 233 -HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RELAEFVR-- 307 (500)
T ss_pred -HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HHHHHHHH--
Confidence 33567999999998621 1112222 2223322211 1122489999999998644 33322222
Q ss_pred CCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
..+...+..+ ...|+..+.++.+|+..|...+..
T Consensus 308 ------~~l~~~g~~V------f~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 308 ------PELEARGWPV------FEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred ------HHHHHcCCeE------EEEECCCCCCHHHHHHHHHHHHHh
Confidence 1222222222 356778889999999998888765
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.6e-13 Score=107.66 Aligned_cols=135 Identities=20% Similarity=0.314 Sum_probs=81.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEee-C--CcEEEEEeCCCCCCCCCChH-------H
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLK-D--GQVVNVIDTPGLFDLSAGSE-------F 88 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~-~--~~~~~l~DtpG~~~~~~~~~-------~ 88 (363)
.+|+.||.+|.||||||++|++.. |.+.+++.. .++..+...+... . ...++++||.|++|....++ -
T Consensus 43 FNilCvGETg~GKsTLmdtLFNt~-f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 43 FNILCVGETGLGKSTLMDTLFNTK-FESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred EEEEEeccCCccHHHHHHHHhccc-cCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 589999999999999999999654 444343322 1222222222111 1 23678999999998532111 1
Q ss_pred HHHHHHHHH-----------hccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhh
Q 017924 89 VGKEIVKCL-----------GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT 156 (363)
Q Consensus 89 ~~~~~~~~~-----------~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~ 156 (363)
+..++..++ .....++|+++|++..+ |.+..-+.-.++.+.. .+ ++|-|+.|.|-++. ..
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds----kV--NIIPvIAKaDtisK--~e 193 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS----KV--NIIPVIAKADTISK--EE 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh----hh--hhHHHHHHhhhhhH--HH
Confidence 222332222 23346889999999876 5555555444444433 22 78888999998876 66
Q ss_pred HHHHhcc
Q 017924 157 LEDFLGH 163 (363)
Q Consensus 157 l~~~~~~ 163 (363)
|..+...
T Consensus 194 L~~FK~k 200 (406)
T KOG3859|consen 194 LKRFKIK 200 (406)
T ss_pred HHHHHHH
Confidence 6655544
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.1e-14 Score=114.17 Aligned_cols=168 Identities=19% Similarity=0.205 Sum_probs=92.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH--
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK-- 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-- 95 (363)
...+|+|+|.+|+|||||+|+|+|... ...... ++|... ..+.+ . .+.++||||++..........+.+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~-~~t~~~--~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRP-GVTRKP--NHYDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCC-ceeeCc--eEEee-c--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 457999999999999999999998753 222222 222222 12222 2 57899999976543222222222222
Q ss_pred --HHhccCCCccEEEEEeecCCCCC-----------HHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc
Q 017924 96 --CLGMAKDGIHAFLVVFSVTNRFS-----------QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 96 --~~~~~~~~~~~~l~v~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~ 162 (363)
++......++++++|+|.+.... ..+...+..+.. .+ .|+++|+||+|+... . .+...
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~----~p~iiv~NK~Dl~~~--~--~~~~~ 151 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-LG----IPPIVAVNKMDKIKN--R--DEVLD 151 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-cC----CCeEEEEECccccCc--H--HHHHH
Confidence 22223346788999998752111 112222333222 12 389999999998654 2 11111
Q ss_pred cCCCchHHHHHHhcCC--ceEEe-cCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 163 HECPKPLKEILQLCDN--RCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 163 ~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
. +....+. .+..+ .....+|+..+ ++.++++.|...+..
T Consensus 152 ~--------~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 152 E--------IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred H--------HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 1 1111121 11000 11246788899 999999988776543
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=108.40 Aligned_cols=141 Identities=20% Similarity=0.250 Sum_probs=86.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.||+|||+.|||||||+++|.|... ....+.. +.+.. .+|||||-+-. ...+...+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~----~~~KTq~----i~~~~-------~~IDTPGEyiE-------~~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI----RYKKTQA----IEYYD-------NTIDTPGEYIE-------NPRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC----CcCccce----eEecc-------cEEECChhhee-------CHHHHHHHHH
Confidence 4899999999999999999998765 2222211 11111 26999996542 1233444444
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
....+|+++++.|++...+.---. +...|. +|+|-|+||+|+...+ ..++ . ...++...+..
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~----fa~~f~----~pvIGVITK~Dl~~~~-~~i~----~-----a~~~L~~aG~~ 121 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPG----FASMFN----KPVIGVITKIDLPSDD-ANIE----R-----AKKWLKNAGVK 121 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCch----hhcccC----CCEEEEEECccCccch-hhHH----H-----HHHHHHHcCCC
Confidence 445789999999987332211111 112233 2899999999998331 2222 2 23344444444
Q ss_pred eEEecCCCcccccchhHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
.. ...|+.++.++.+|.+.|.
T Consensus 122 ~i-----f~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 122 EI-----FEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred Ce-----EEEECCCCcCHHHHHHHHh
Confidence 33 2557778899999999875
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.4e-14 Score=109.81 Aligned_cols=155 Identities=19% Similarity=0.269 Sum_probs=91.6
Q ss_pred EEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCC
Q 017924 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG 103 (363)
Q Consensus 24 lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (363)
|+|.+|+|||||+|.|+|.... .... .+.|.......+.+ ++..+.++||||+.+...... ...+....... .+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~-~~~~-~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK-VGNW-PGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc-ccCC-CCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence 5899999999999999987532 2122 23344444444555 567889999999876432211 11222222222 57
Q ss_pred ccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEe
Q 017924 104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF 183 (363)
Q Consensus 104 ~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (363)
.|++++|+|+. .... ....+..+.. .+ .++++|+||+|.... ..+..... .+....+..+
T Consensus 75 ~d~vi~v~d~~-~~~~-~~~~~~~~~~-~~----~~~iiv~NK~Dl~~~--~~~~~~~~--------~~~~~~~~~~--- 134 (158)
T cd01879 75 PDLIVNVVDAT-NLER-NLYLTLQLLE-LG----LPVVVALNMIDEAEK--RGIKIDLD--------KLSELLGVPV--- 134 (158)
T ss_pred CcEEEEEeeCC-cchh-HHHHHHHHHH-cC----CCEEEEEehhhhccc--ccchhhHH--------HHHHhhCCCe---
Confidence 89999999987 3222 2222323322 12 389999999998754 22221111 1222222222
Q ss_pred cCCCcccccchhHHHHHHHHHHHH
Q 017924 184 DNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 184 ~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
...|+..+.++.++++.+...
T Consensus 135 ---~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 135 ---VPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred ---EEEEccCCCCHHHHHHHHHHH
Confidence 256777788899988877665
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=111.97 Aligned_cols=170 Identities=16% Similarity=0.118 Sum_probs=93.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|.+|+|||||++.+++... ... ...+.+.......+.+ ++ ..+.++||+|....... ...+.....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f-~~~-~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~---~~~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEF-PEE-YIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGT---AGQEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCC-Ccc-cCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCcc---chhHHHHHH
Confidence 3799999999999999999986543 211 1111111111122333 44 46779999997643211 112222222
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhc-cccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~-~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...+..+|++++|+|+++..+-.. ..++..+..... .....|+++|.||+|+... ...... .+..+...
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~--~~~~~~-------~~~~~~~~ 145 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH--RFAPRH-------VLSVLVRK 145 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc--ccccHH-------HHHHHHHH
Confidence 233467899999999974333222 223333443321 1122389999999998643 111000 01222211
Q ss_pred -cCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 -CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+..+ ..+|++.+.++.++++.+...+-.
T Consensus 146 ~~~~~~------~e~Sak~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 146 SWKCGY------LECSAKYNWHILLLFKELLISATT 175 (198)
T ss_pred hcCCcE------EEecCCCCCCHHHHHHHHHHHhhc
Confidence 11122 267888899999999887766544
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=6e-14 Score=110.82 Aligned_cols=160 Identities=15% Similarity=0.124 Sum_probs=89.5
Q ss_pred EEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccC
Q 017924 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (363)
|+|+|..|+|||||++.+++... ... ...|.......+.. .+..+.++||+|.... .......+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~~~---~~pt~g~~~~~i~~-~~~~l~i~Dt~G~~~~-----------~~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-LES---VVPTTGFNSVAIPT-QDAIMELLEIGGSQNL-----------RKYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-ccc---ccccCCcceEEEee-CCeEEEEEECCCCcch-----------hHHHHHHH
Confidence 78999999999999999986642 111 11121111122223 4667889999996542 11222334
Q ss_pred CCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceE
Q 017924 102 DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV 181 (363)
Q Consensus 102 ~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 181 (363)
.++|++++|+|.++..+-... ..++..+.......|+++|.||.|+... ....+.... . .+..+....+..++
T Consensus 66 ~~ad~ii~V~D~t~~~s~~~~--~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-~--~~~~~~~~~~~~~~ 138 (164)
T cd04162 66 SGSQGLIFVVDSADSERLPLA--RQELHQLLQHPPDLPLVVLANKQDLPAA--RSVQEIHKE-L--ELEPIARGRRWILQ 138 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHH--HHHHHHHHhCCCCCcEEEEEeCcCCcCC--CCHHHHHHH-h--CChhhcCCCceEEE
Confidence 578999999998733321111 1222222211122489999999998654 333322211 0 02223222233333
Q ss_pred EecCCCcccccchhHHHHHHHHH
Q 017924 182 LFDNKTKDEAKGTEQVRQLLSLV 204 (363)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~l 204 (363)
..+.....|+..+.++.++++.+
T Consensus 139 ~~Sa~~~~s~~~~~~v~~~~~~~ 161 (164)
T cd04162 139 GTSLDDDGSPSRMEAVKDLLSQL 161 (164)
T ss_pred EeeecCCCChhHHHHHHHHHHHH
Confidence 33455666777788998888765
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.6e-14 Score=109.61 Aligned_cols=154 Identities=19% Similarity=0.174 Sum_probs=86.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|.+|+|||||++.+++... .. ....|.... ...... ++ ..+.++||+|.... ..+.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~--------~~l~-- 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF-VD---EYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEY--------SAMR-- 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-cC---CcCCcchheEEEEEEE-CCEEEEEEEEECCCCcch--------HHHH--
Confidence 5899999999999999999996643 11 111122111 122223 33 34678999995431 1122
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...+...+++++|++.++.-+-.+. .++..+..... ....|+++|.||+|.... ...... ...+...
T Consensus 67 -~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~--~~~~~~--------~~~~~~~ 134 (162)
T cd04138 67 -DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAAR--TVSSRQ--------GQDLAKS 134 (162)
T ss_pred -HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--eecHHH--------HHHHHHH
Confidence 2233467999999998733222222 23333433321 112389999999998653 211111 1122222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.+..++ ..|+..+.++.++++.+.+
T Consensus 135 ~~~~~~------~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 135 YGIPYI------ETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred hCCeEE------EecCCCCCCHHHHHHHHHH
Confidence 222222 5678888999999887654
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.8e-13 Score=120.03 Aligned_cols=123 Identities=16% Similarity=0.196 Sum_probs=78.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCC-ceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.++.+|+|+|.+|+|||||+|.|++..... .+..+. |.+.....+.+ ++..+.++||||+.+.. ..+...-..
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai--vs~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~---~~ie~~gi~ 274 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAI--VSDIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHA---DFVERLGIE 274 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcc--cCCCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccch---hHHHHHHHH
Confidence 355799999999999999999999875311 222222 33333344455 78888999999986532 111111111
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
.....+..+|++++|+|+++..+..+. ++..+.. .. .|+++|+||+|+..
T Consensus 275 ~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~~--~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK---SK--KPFILVLNKIDLKI 324 (442)
T ss_pred HHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh---CC--CCEEEEEECccCCC
Confidence 122344678999999999866655443 3333221 12 38999999999853
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-14 Score=113.72 Aligned_cols=161 Identities=19% Similarity=0.136 Sum_probs=88.5
Q ss_pred EEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCC
Q 017924 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD 102 (363)
Q Consensus 24 lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
|+|++|||||||+|+|+|.... .... ...|.......+.+ + +..+.++||||+.........+...+.. ...
T Consensus 1 iiG~~~~GKStll~~l~~~~~~-~~~~-~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~----~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK-VANY-PFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFLA----HIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc-ccCC-CceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHHH----HHh
Confidence 5899999999999999987531 1111 12233333333444 5 7888999999985422111111222222 234
Q ss_pred CccEEEEEeecCCCC------CHHHH-HHHHHHHHHhcc-----ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHH
Q 017924 103 GIHAFLVVFSVTNRF------SQEEE-TAVHRLPNLFGK-----NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (363)
Q Consensus 103 ~~~~~l~v~~~~~~~------~~~~~-~~l~~~~~~~~~-----~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~ 170 (363)
+++++++|+|+.+.. ...+. .....+...... ....|+++|+||+|+... ..+..+...
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~------- 144 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--EELEEELVR------- 144 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--hHHHHHHHH-------
Confidence 679999999987332 22222 222222221110 012489999999999765 333322100
Q ss_pred HHHHhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.........+ ...|+..+.++.++++.+..
T Consensus 145 ~~~~~~~~~~------~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 145 ELALEEGAEV------VPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred HHhcCCCCCE------EEEehhhhcCHHHHHHHHHh
Confidence 0111111222 24577778888888887643
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=123.24 Aligned_cols=164 Identities=19% Similarity=0.165 Sum_probs=99.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.|+|||.+|||||||||+|++...- ....+ .|....+..+.+.++..++++|+||+.........+...+.+.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k---Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrh--- 233 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK---IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRH--- 233 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc---cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHH---
Confidence 8999999999999999999976531 12222 2444444445553377899999999865222222233344333
Q ss_pred cCCCccEEEEEeecCCC---CCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 100 AKDGIHAFLVVFSVTNR---FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~---~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
..+++++++|+|+++. -...+ ..+...+......-...|.+||+||+|+... ...++. +...
T Consensus 234 -ier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-~e~l~~------------l~~~ 299 (424)
T PRK12297 234 -IERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-EENLEE------------FKEK 299 (424)
T ss_pred -HhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-HHHHHH------------HHHH
Confidence 3467999999998622 12222 2333444443211123489999999997422 111111 2222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+..+ ...|+.++.++.+|++.+...+..
T Consensus 300 l~~~i------~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 300 LGPKV------FPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred hCCcE------EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 22122 255788889999999999887765
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.2e-14 Score=115.86 Aligned_cols=129 Identities=22% Similarity=0.272 Sum_probs=87.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH-HHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~ 97 (363)
..+|+|.|.+|+|||||++.|++... ...+.+.|+..-...+...++..+.++||||+.|-..... .+..+-..++
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~Akp---EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKP---EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCC---ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 36999999999999999999998764 2445555654433333222677899999999998543321 2222222222
Q ss_pred hccCCCccEEEEEeecC--CCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHH
Q 017924 98 GMAKDGIHAFLVVFSVT--NRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~--~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~ 159 (363)
. .-.++++|++|.+ +.++.++ ...++.++..|.. ++++|+||.|.... +.+++
T Consensus 245 ~---hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~----p~v~V~nK~D~~~~--e~~~~ 300 (346)
T COG1084 245 R---HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKA----PIVVVINKIDIADE--EKLEE 300 (346)
T ss_pred H---HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCC----CeEEEEecccccch--hHHHH
Confidence 1 2348899999987 5566544 4577788888773 89999999998865 44443
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-13 Score=128.09 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=102.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCCh--HHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~~~~~~ 96 (363)
..+|+++|.+|||||||+|.|+|.... .+.. .++|++.....+.+ ++..++++||||..+..... ....+.+.+.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-vgn~-pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR-VGNW-AGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-cCCC-CCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHH
Confidence 368999999999999999999998652 2222 33455544444444 67789999999987643211 1122233222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
. .....+|++++|+|++ .+... ......+.+. + .|+++++||+|.... ...... +..+.+..
T Consensus 80 ~-l~~~~aD~vI~VvDat-~ler~-l~l~~ql~e~-g----iPvIvVlNK~Dl~~~--~~i~id--------~~~L~~~L 141 (772)
T PRK09554 80 Y-ILSGDADLLINVVDAS-NLERN-LYLTLQLLEL-G----IPCIVALNMLDIAEK--QNIRID--------IDALSARL 141 (772)
T ss_pred H-HhccCCCEEEEEecCC-cchhh-HHHHHHHHHc-C----CCEEEEEEchhhhhc--cCcHHH--------HHHHHHHh
Confidence 2 2235789999999987 43322 2233333332 2 389999999998744 222222 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+...+ ..++..+.+++++.+.+.....
T Consensus 142 G~pVv------piSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 142 GCPVI------PLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred CCCEE------EEEeecCCCHHHHHHHHHHhhh
Confidence 43332 5677788899999999887654
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-14 Score=112.89 Aligned_cols=158 Identities=18% Similarity=0.122 Sum_probs=89.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+..+|+|+|++|||||||++.|.|.......+ |....+..+.+ ++..+.++|++|... +...+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~-----t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~~ 75 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITP-----TQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPYW 75 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCC-----CCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 35899999999999999999999864311111 11112223334 567888999999532 22222
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..++++++|+|+.+..+-.. ...+..+..... ....|+++++||+|.... ...+++... ++ +. ..
T Consensus 76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~--~~~~~i~~~-----l~-~~-~~ 145 (173)
T cd04155 76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLATA--APAEEIAEA-----LN-LH-DL 145 (173)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCccC--CCHHHHHHH-----cC-Cc-cc
Confidence 233457799999999872211111 112222211110 112389999999998654 333333222 11 00 01
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
..+... ....|+.++.++.++++.|.
T Consensus 146 ~~~~~~---~~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 146 RDRTWH---IQACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred CCCeEE---EEEeECCCCCCHHHHHHHHh
Confidence 111111 12568888999999988764
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-13 Score=111.16 Aligned_cols=157 Identities=16% Similarity=0.184 Sum_probs=90.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.|+|+|..|+|||||++.++... |... ...+.........+.+ ++ ..+.++||+|... +.....
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~-f~~~-~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~-----------~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT-FCEA-CKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQER-----------FNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC-CCCc-CCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHHHH
Confidence 58999999999999999998543 3221 1111122222223333 43 5678999999543 222333
Q ss_pred ccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+.++|++++|+|++++-+-... .++..+......+ .++++|.||.|+... ..+.... ...+.....
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~~~--~~v~~~~-------~~~~a~~~~ 136 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETD--REISRQQ-------GEKFAQQIT 136 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccc--cccCHHH-------HHHHHHhcC
Confidence 455688999999999844443332 2344444333323 389999999998643 1111000 111222211
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
+..+ ..+|++.+.++.+++..+...
T Consensus 137 ~~~~-----~etSAktg~gV~e~F~~l~~~ 161 (202)
T cd04120 137 GMRF-----CEASAKDNFNVDEIFLKLVDD 161 (202)
T ss_pred CCEE-----EEecCCCCCCHHHHHHHHHHH
Confidence 1112 256888899999998876543
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-14 Score=112.03 Aligned_cols=155 Identities=16% Similarity=0.159 Sum_probs=85.4
Q ss_pred EEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccC
Q 017924 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (363)
|+|+|++|||||||+|.|+|... .. ....|+......... ++..+.++|+||... +.......+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-~~---~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-SE---DTIPTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-Cc---CccCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 78999999999999999998753 11 111222222223333 456788999999533 222222334
Q ss_pred CCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 102 DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 102 ~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
...|++++|+|++ ....-. .....+...... ....|+++|+||.|.... ....+.... +. +.......
T Consensus 66 ~~~d~ii~v~d~~-~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~-----~~-~~~~~~~~ 135 (159)
T cd04159 66 RGVNAIVYVVDAA-DRTALE-AAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA--LSVDELIEQ-----MN-LKSITDRE 135 (159)
T ss_pred hcCCEEEEEEECC-CHHHHH-HHHHHHHHHHcChhhcCCCEEEEEeCccccCC--cCHHHHHHH-----hC-cccccCCc
Confidence 5789999999987 221111 111222222111 012389999999998754 333222221 10 00000111
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.. ....|++.+.++.++++.+..
T Consensus 136 ~~----~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 136 VS----CYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred eE----EEEEEeccCCChHHHHHHHhh
Confidence 11 124577788899998887653
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.3e-14 Score=111.54 Aligned_cols=155 Identities=16% Similarity=0.166 Sum_probs=88.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|..|+|||||++.|..... .. . ..|+...+..+.. ....+.++||+|... +.....
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~-~~-~---~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 71 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQS-VT-T---IPTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLWR 71 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCC-cc-c---cCCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence 47999999999999999999975432 11 1 1122222222333 567889999999542 222223
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccc--cccceEEEEeCCCCCCc-chhhHHHHhccCCCchHHHHHHh
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
..+.++|++++|+|+++..+-.+ ....+...+... ...|++||.||+|+... ....+.+++.. ...
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~---------~~~ 140 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRIDE--ARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGL---------TRI 140 (168)
T ss_pred HHhccCCEEEEEEeCCchhhHHH--HHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCC---------Ccc
Confidence 34567899999999874322211 122222222111 11389999999998643 11222222211 000
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
....+.. ..+|++++.++.++++.|.
T Consensus 141 ~~~~~~~----~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 141 RDRNWYV----QPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CCCcEEE----EEeeCCCCCChHHHHHHHh
Confidence 0111122 2568889999999998764
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=108.59 Aligned_cols=154 Identities=18% Similarity=0.083 Sum_probs=89.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE--EEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK--TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.+++... ... ...+....++ ..... ....+.++||+|... +...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~ 65 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGY-EPQ---QLSTYALTLYKHNAKFEGKTILVDFWDTAGQER-----------FQTM 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCC---cCCceeeEEEEEEEEECCEEEEEEEEeCCCchh-----------hhhh
Confidence 4799999999999999999885532 211 1112222221 12221 134677999999543 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|.++..+-.+ ..++..+..... + .|+++|.||+|+... . ... ...+...
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~p~ivv~nK~Dl~~~--~--~~~--------~~~~~~~ 130 (161)
T cd04124 66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-E--IPCIVVANKIDLDPS--V--TQK--------KFNFAEK 130 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEECccCchh--H--HHH--------HHHHHHH
Confidence 3334567899999999874433222 234444444322 2 389999999997422 1 111 1112222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.+..++ ..|+..+.++.++++.+...+.
T Consensus 131 ~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 131 HNLPLY------YVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred cCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 222222 4678888999999988776543
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-13 Score=108.86 Aligned_cols=160 Identities=13% Similarity=0.124 Sum_probs=97.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||+..+.+.. |.. ....+.+.......+.. ++ ..+.++||+|... +....
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~-~~~-~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~l~ 72 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGS-TES-PYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCTIF 72 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCC-CCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHHH
Confidence 799999999999999999998543 221 11111222222222333 33 4677999999543 22223
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+.++|++++|+|++++.+-.. ..++..+..... . .+++||.||.|+........+ . ...+....
T Consensus 73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~--~piilVGNK~DL~~~~~v~~~-~--------~~~~a~~~ 140 (189)
T cd04121 73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-G--VPKILVGNRLHLAFKRQVATE-Q--------AQAYAERN 140 (189)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccchhccCCCHH-H--------HHHHHHHc
Confidence 334568899999999985544333 335555544332 3 389999999998642001111 1 22333333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
+..++ ..|++.+.+++++++.+...+...
T Consensus 141 ~~~~~------e~SAk~g~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 141 GMTFF------EVSPLCNFNITESFTELARIVLMR 169 (189)
T ss_pred CCEEE------EecCCCCCCHHHHHHHHHHHHHHh
Confidence 33333 568888999999999888766543
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-13 Score=107.98 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=88.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+|+|+|..|+|||||++.|++..... ....+.+.+.....+.+ ++ ..+.++||||... +...+.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN--QYQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc--cCCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 79999999999999999999775411 11112222222222333 33 3578999999432 122222
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
......|++++|+|.++.-+-.. ..++..+....+.+ .++++++||+|.........+ . ........+
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~~~~~~~~~-~--------~~~~~~~~~ 136 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGND--VIIVLVGNKTDLSDKRQVSTE-E--------GEKKAKELN 136 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CEEEEEEEChhccccCccCHH-H--------HHHHHHHhC
Confidence 33457899999999873322222 23344443333322 389999999998533111111 1 111222222
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
..++ ..|+..+.++.+++..+..
T Consensus 137 ~~~~------~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 137 AMFI------ETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred CEEE------EEeCCCCCCHHHHHHHHHH
Confidence 2222 4577788899999887754
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.6e-14 Score=111.26 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=90.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|..|+|||||++.+++... . . ...|+...+..+.. ++..+.++||||.... ...+...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~-~---~-~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~-----------~~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF-M---Q-PIPTIGFNVETVEY-KNLKFTIWDVGGKHKL-----------RPLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-C---C-cCCcCceeEEEEEE-CCEEEEEEECCCChhc-----------chHHHHH
Confidence 589999999999999999987632 1 1 11233233333444 5678899999996542 1112223
Q ss_pred CCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC-
Q 017924 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN- 178 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~- 178 (363)
+.+.|++++|+|.++.-+-.+ ...+..+..... ....++++|.||.|+... ...++.... + .....+..
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~-~~~~~~~~~ 134 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVAGA--LSVEEMTEL-----L-SLHKLCCGR 134 (169)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcccC--CCHHHHHHH-----h-CCccccCCC
Confidence 457899999999873322111 222222221111 011389999999998643 222221111 0 00011111
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
...+ ..+|++.+.++.++++.|.+.+..
T Consensus 135 ~~~~----~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 135 SWYI----QGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred cEEE----EeCcCCCCCCHHHHHHHHHHHHhh
Confidence 1122 256888999999999988765543
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=129.35 Aligned_cols=164 Identities=17% Similarity=0.199 Sum_probs=108.5
Q ss_pred EEEEEcCCCCchHHHHHHhhccccccc-ccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.|+++|+.++|||||+++|+|...-.. .....+.|+...+..+...++..+.|+||||.. .+.+.+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-----------~fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-----------KFLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-----------HHHHHHHH
Confidence 699999999999999999998642111 112245666555544444356788999999953 23333334
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
...++|++++|++++..+.......+..+.. ++.. .+++|+||+|+... ..++..... +..++...+..
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi~---~iIVVlNKiDlv~~--~~~~~v~~e-----i~~~l~~~~~~ 139 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQL-TGNP---MLTVALTKADRVDE--ARIAEVRRQ-----VKAVLREYGFA 139 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEECCccCCH--HHHHHHHHH-----HHHHHHhcCCC
Confidence 4567899999999986677777777665543 3321 46789999999865 555544444 54454433211
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.......|+.++.++.+|++.|..+..
T Consensus 140 ---~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 140 ---EAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred ---CCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 011235688888999999999987654
|
|
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-13 Score=107.28 Aligned_cols=158 Identities=20% Similarity=0.192 Sum_probs=91.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|+.|+|||||++.+++... ......+.+.+.....+.. ++ ..+.++|+||... +....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF--SEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQER-----------FRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 4899999999999999999997754 1111122222222333334 33 4678999999432 12222
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
......+|++++|+|..+.-+... ..++..+....... .|++++.||+|..... ..-.+. ...+....
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~--~pivvv~nK~D~~~~~-~~~~~~--------~~~~~~~~ 135 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPN--VVIMLVGNKSDLEDQR-QVSREE--------AEAFAEEH 135 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhccccc-CCCHHH--------HHHHHHHc
Confidence 233457899999999873222222 12333333333222 3899999999976430 111111 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ ..|+..+.++.++++.+.+.+
T Consensus 136 ~~~~~------e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 136 GLPFF------ETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 33322 456677889999998877654
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=109.32 Aligned_cols=160 Identities=16% Similarity=0.107 Sum_probs=90.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|+|||||++.+++... .. ....++..+.....+... ....+.++||+|... +.....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRF-VS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-----------YLEVRN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CC-CCCCccceeEEEEEEEECCeEEEEEEEECCccHH-----------HHHHHH
Confidence 4899999999999999999997753 11 111111111112222221 235678999999532 112222
Q ss_pred ccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhcc---ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGK---NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~---~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
..+.+++++++|+|.+++-+-. ...++..+...+.. ....|+++|.||+|+........++ ...+..
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 138 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE---------GRLWAE 138 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHH---------HHHHHH
Confidence 3346789999999987332222 22344455444432 1224899999999986320011111 111222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
..+..++ ..|+..+.++.++++.+.+.
T Consensus 139 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 139 SKGFKYF------ETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred HcCCeEE------EEECCCCCCHHHHHHHHHHH
Confidence 2232232 56777888999999887654
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=110.50 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=91.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
++|+|+|..|+|||||++.+++... ......|+...+. .+...+ ...+.++||+|... +...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~----~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF----PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC----CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHH
Confidence 4899999999999999999986653 1122223222222 222211 23578999999543 1222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+.++|++++|+|.+++-+-... .++..+... ... .|+++|.||.|+... ......+.. .....+..
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~--~piilv~nK~Dl~~~--~~~~~~v~~---~~~~~~~~ 137 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CPG--TPIMLVGLKTDLRKD--KNLDRKVTP---AQAESVAK 137 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCC--CCEEEEEeChhhhhC--ccccCCcCH---HHHHHHHH
Confidence 22345688999999999844333222 133333322 222 389999999998643 110000000 01222333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+...+ ...|+..+.++.+++..+...+.
T Consensus 138 ~~~~~~~-----~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 138 KQGAFAY-----LECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred HcCCcEE-----EEccCCCCCCHHHHHHHHHHHHH
Confidence 3333122 25677888999999988766553
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-13 Score=107.98 Aligned_cols=158 Identities=18% Similarity=0.156 Sum_probs=91.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|.+|+|||||++.+++... .... ..+.........+.+ ++ ..+.++||+|... +....
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~-~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~-----------~~~~~ 69 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSF-NPSF-ISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQER-----------FRTIT 69 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcC-Cccc-ccCccceEEEEEEEE-CCEEEEEEEEeCCchHH-----------HHHHH
Confidence 6999999999999999999986642 2211 111112222223333 33 3678999999432 11222
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++++|+++..+-.. ..++..+....... .++++|.||+|+........++ ........
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 138 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASED--VERMLVGNKCDMEEKRVVSKEE---------GEALADEY 138 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCHHH---------HHHHHHHc
Confidence 233457899999999873322222 22333333332222 3899999999987431111111 22233332
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..+ ...|+..+.++.+++..+.+.+
T Consensus 139 ~~~~------~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 139 GIKF------LETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred CCEE------EEEeCCCCCCHHHHHHHHHHHH
Confidence 3222 2567778889999998876654
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-13 Score=107.53 Aligned_cols=156 Identities=21% Similarity=0.178 Sum_probs=87.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+++|..|+|||||++.+++... ......++...+. .... ++ ..+.++||||.... ..+.
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~--------~~~~-- 67 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF----VTDYDPTIEDSYTKQCEI-DGQWAILDILDTAGQEEF--------SAMR-- 67 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC----CcccCCCccceEEEEEEE-CCEEEEEEEEECCCCcch--------hHHH--
Confidence 6999999999999999999986543 1111122222111 2223 33 35778999996542 1121
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.......|++++|+++++.-+-.. ..++..+..... ....|++++.||+|+... ..+... . ...+...
T Consensus 68 -~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~--~~~~~~--~-----~~~~~~~ 136 (164)
T cd04145 68 -EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQ--RKVSRE--E-----GQELARK 136 (164)
T ss_pred -HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCcccccc--ceecHH--H-----HHHHHHH
Confidence 122346799999999873322222 222333333221 112389999999998643 111100 0 1122222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.+..+ ...|+..+.++.++++.+...
T Consensus 137 ~~~~~------~~~Sa~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 137 LKIPY------IETSAKDRLNVDKAFHDLVRV 162 (164)
T ss_pred cCCcE------EEeeCCCCCCHHHHHHHHHHh
Confidence 22222 256778888999998877553
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=110.02 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=89.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|..|+|||||++.+.... |.. . ..|+...+..... .+..+.++||+|... +.....
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~-~~~--~--~~t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~~ 75 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGE-SVT--T--IPTIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPLWR 75 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-CCC--c--CCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 3799999999999999999995322 211 1 1222222333334 567888999999543 222223
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccc--cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
..+.+++++++|+|.+++-+-.+ ..+.+..++... ...|++||.||.|+... ...+++... +. + ...
T Consensus 76 ~~~~~ad~ii~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~-~-~~~ 144 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRIDE--AREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEK-----LG-L-HSI 144 (175)
T ss_pred HHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHH-----hC-c-ccc
Confidence 34567899999999873322111 122222222111 11389999999998643 211222111 10 0 001
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
..+.+. ...+|++.+.++.++++.|...
T Consensus 145 ~~~~~~---~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 145 RDRNWY---IQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred CCCcEE---EEEeeCCCCCCHHHHHHHHHHH
Confidence 111111 1246888899999999987654
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=133.40 Aligned_cols=161 Identities=22% Similarity=0.179 Sum_probs=105.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|+|.+|+|||||+|.|+|...-..... .++|.+.......+ ++..+.++||+|+.... ..+...+......
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~-pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 350 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDT-PGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQAQI 350 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCC-CCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHHHHH
Confidence 5899999999999999999998753111122 23344444444455 67889999999987421 2234445555555
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
+...+|++++|+|++..++..+..+...+... + .|+++|+||+|.... ... .......-...
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-~----~pvIlV~NK~D~~~~--~~~-----------~~~~~~lg~~~ 412 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-G----KPVVLAVNKIDDQAS--EYD-----------AAEFWKLGLGE 412 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEECcccccc--hhh-----------HHHHHHcCCCC
Confidence 56688999999999867777777666666532 2 389999999997643 111 11111110111
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
. ...|+..+.++.+|++.+...+.
T Consensus 413 ~------~~iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 413 P------YPISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred e------EEEECCCCCCchHHHHHHHHhcc
Confidence 1 24688889999999988776653
|
|
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=108.15 Aligned_cols=158 Identities=16% Similarity=0.137 Sum_probs=89.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... .. ....+.........+.. ++ ..+.++||+|... +....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~-----------~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF-TS-AFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQER-----------YRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CC-CCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 5899999999999999999986653 11 11111111111122222 22 4678999999432 22222
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+.+.+++++|+|.++.-+-.. ..++..+....... .++++|.||+|+........+ . ...+....
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~~~~~~~~~-~--------~~~~~~~~ 136 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVILVGNKCDMEDERVVSSE-R--------GRQLADQL 136 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CCEEEEEECcccCcccccCHH-H--------HHHHHHHc
Confidence 344568899999999873322211 22333333332222 379999999998644101111 1 12222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ ..|+..+.++.++++.+...+
T Consensus 137 ~~~~~------~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 137 GFEFF------EASAKENINVKQVFERLVDII 162 (165)
T ss_pred CCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 22222 467788899999999876654
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-13 Score=127.14 Aligned_cols=165 Identities=19% Similarity=0.193 Sum_probs=106.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc--cccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA--FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+++|+.++|||||+++|+|... +.. ....+.|.+.....+.+ .+..++++|+||.. .+...+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~e-E~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe-----------~f~~~~ 67 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPE-EKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHE-----------KFISNA 67 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChh-HhcCCceEEeEEEEEEe-CCEEEEEEECCCHH-----------HHHHHH
Confidence 3799999999999999999998542 111 12344566665555555 56888999999942 233444
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+..++|++++|+|+++.........+..+.. .+- .++++|+||+|+... ..++..... +..++...+
T Consensus 68 ~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv~~--~~~~~~~~e-----i~~~l~~~~ 136 (581)
T TIGR00475 68 IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGI---PHTIVVITKADRVNE--EEIKRTEMF-----MKQILNSYI 136 (581)
T ss_pred HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCCCH--HHHHHHHHH-----HHHHHHHhC
Confidence 445567899999999985555555555554433 332 149999999999865 444433333 444444322
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.. ........|+.++.++.++.+.+..++..
T Consensus 137 ~~--~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 137 FL--KNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CC--CCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 10 00112356788888999998887776654
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=110.82 Aligned_cols=160 Identities=13% Similarity=0.078 Sum_probs=90.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+.+|+|+|..|+|||||++.+..... .. . ..|+...+..+.. .+..+.++||+|... +....
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~-~~-~---~~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~ 78 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEV-VT-T---IPTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPLW 78 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCc-cc-c---CCccccceEEEEE-CCEEEEEEECCCCHh-----------HHHHH
Confidence 357999999999999999999964322 11 1 1122222223333 567889999999542 22222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccc--cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...+.++|++++|+|+++.-+-.+ ....+...+... ...+++||.||.|+... ...++.... +. +..
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----l~--~~~ 147 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEK-----LG--LHS 147 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHH-----hC--CCc
Confidence 334568899999999873221111 112222222211 12389999999997643 111211111 10 011
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..+.+. ...+|++++.++.++++.|...+
T Consensus 148 ~~~~~~~---~~~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 148 VRQRNWY---IQGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred ccCCcEE---EEeeeCCCCCCHHHHHHHHHHHH
Confidence 1111111 12567888999999999887654
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=4e-13 Score=106.98 Aligned_cols=157 Identities=15% Similarity=0.136 Sum_probs=91.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.+.+... .. ....|+...+ ..+.. ++ ..+.++||+|... +...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~l 66 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF-PD---YHDPTIEDAYKQQARI-DNEPALLDILDTAGQAE-----------FTAM 66 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CC---CcCCcccceEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHH
Confidence 6899999999999999998885542 11 1111222111 12233 33 4578999999543 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHH-HHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|.+++.+-.... ++..+..... ....|+++|.||+|+... ..+... . ...+...
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~--~~v~~~--~-----~~~~a~~ 136 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ--RQVTTE--E-----GRNLARE 136 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc--CccCHH--H-----HHHHHHH
Confidence 233455789999999998555544433 3333443321 112389999999997543 111100 0 1122222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ .+|+..+.++.++++.+...+
T Consensus 137 ~~~~~~------e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 137 FNCPFF------ETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred hCCEEE------EEecCCCCCHHHHHHHHHHHH
Confidence 232222 567888899999998776544
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.8e-14 Score=109.98 Aligned_cols=154 Identities=16% Similarity=0.047 Sum_probs=86.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|..|+|||||++.|+.... .. . ..|+...+..+.+ .+..+.++||||... +......+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~-~~-~---~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV-VT-T---IPTIGFNVETVTY-KNLKFQVWDLGGQTS-----------IRPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC-cC-c---CCccCcCeEEEEE-CCEEEEEEECCCCHH-----------HHHHHHHH
Confidence 589999999999999999975543 11 1 1122222233334 567889999999653 11222233
Q ss_pred CCCccEEEEEeecCCCCCHH--HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 101 KDGIHAFLVVFSVTNRFSQE--EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
+.+++++++|+|+++..+.. .......+..... ...|+++|+||+|+... ....+.... +. ......
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~--~~~~~i~~~-----~~--~~~~~~ 132 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEEL--KGAVLLVFANKQDMPGA--LSEAEISEK-----LG--LSELKD 132 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhh--cCCcEEEEEeCCCCCCC--CCHHHHHHH-----hC--ccccCC
Confidence 45789999999987322111 1112222221110 12399999999998644 222221111 10 000001
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
... .....|+..+.++.++++.+.
T Consensus 133 ~~~---~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 133 RTW---SIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred CcE---EEEEeeccCCCCHHHHHHHHh
Confidence 100 123678888999999998764
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-13 Score=107.54 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=89.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
+|+|+|..|||||||++.+++.. |... ... +.......... .....+.++||+|..... ..+ ..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~-~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~----~~ 66 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEE-FPEN-VPR--VLPEITIPADVTPERVPTTIVDTSSRPQDR-------ANL----AA 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc-CCcc-CCC--cccceEeeeeecCCeEEEEEEeCCCchhhh-------HHH----hh
Confidence 79999999999999999998654 2221 111 11111111111 134577899999965421 111 12
Q ss_pred cCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchh-hHHHHhccCCCchHHHHHHhc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK-TLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~-~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.....|++++|+|+++.-+-.. ..++..+..... . .|+++|.||+|+...... .+++.+. .+....
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~pviiv~nK~Dl~~~~~~~~~~~~~~--------~~~~~~ 135 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-K--VPIILVGNKSDLRDGSSQAGLEEEML--------PIMNEF 135 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcccccchhHHHHHHH--------HHHHHH
Confidence 2357899999999874333333 234444544332 2 389999999998754110 1122211 111211
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
... ......|+.++.++.++++.+...+
T Consensus 136 ~~~----~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 136 REI----ETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred hcc----cEEEEeccccccCHHHHHHHHHHHh
Confidence 110 0122668888899999998776653
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.9e-14 Score=109.01 Aligned_cols=154 Identities=14% Similarity=0.091 Sum_probs=86.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+++|..|+|||||++.+..... .. . ..|+...+..+.. ....+.++||+|... +.......
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~-~~--~--~pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~~ 64 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEI-VT--T--IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY 64 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-cc--c--CCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHH
Confidence 799999999999999999964332 11 1 1122222222333 567789999999642 22222334
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccc--cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
+.++|++++|+|.++..+-.+ ..+.+..+.... ...|++|+.||.|+... ...++.... +. +.....
T Consensus 65 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~--~~~~~~ 133 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERIGE--AREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDK-----LG--LHSLRN 133 (159)
T ss_pred hcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHH-----hC--ccccCC
Confidence 568899999999873322111 112222222111 11389999999998643 222222211 10 001111
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
+... ....|++++.++.++++.|.
T Consensus 134 ~~~~---~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 134 RNWY---IQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CCEE---EEEeeCCCCCCHHHHHHHHh
Confidence 1111 13568888999999988764
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-13 Score=126.16 Aligned_cols=161 Identities=16% Similarity=0.201 Sum_probs=100.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|+.|+|||||++.|.+... .. ...++.|.....+.+.+.++..++|+||||..+. .....
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v-~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----------~~~r~ 153 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKV-AQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----------TSMRA 153 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCc-cc-ccCCceeecceEEEEEECCCcEEEEEECCCCcch-----------hhHHH
Confidence 36999999999999999999987653 11 2223445555555555533448999999996542 12223
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.+....|++++|+++++.........+..+.. .+ .|+++++||+|+...+...+...+.. +......++.
T Consensus 154 rga~~aDiaILVVda~dgv~~qT~e~i~~~~~-~~----vPiIVviNKiDl~~~~~e~v~~~L~~-----~g~~~~~~~~ 223 (587)
T TIGR00487 154 RGAKVTDIVVLVVAADDGVMPQTIEAISHAKA-AN----VPIIVAINKIDKPEANPDRVKQELSE-----YGLVPEDWGG 223 (587)
T ss_pred hhhccCCEEEEEEECCCCCCHhHHHHHHHHHH-cC----CCEEEEEECcccccCCHHHHHHHHHH-----hhhhHHhcCC
Confidence 34567899999999875555555555544332 22 28999999999864322233333332 1111222222
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
...+ ...|+.++.++.+|++.+..
T Consensus 224 ~~~~----v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 224 DTIF----VPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CceE----EEEECCCCCChHHHHHhhhh
Confidence 1111 25788899999999988754
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-13 Score=121.92 Aligned_cols=164 Identities=18% Similarity=0.093 Sum_probs=99.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|||.+|||||||+|.|+|...+.. ..-..|.+.....+.+.+...+.++||+|+... .+ ......+...+ .
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~--~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~-lp-~~lve~f~~tl-~ 272 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAA--DQLFATLDPTLRRIDVADVGETVLADTVGFIRH-LP-HDLVAAFKATL-Q 272 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeec--cCCCCCcCCceEEEEeCCCCeEEEEecCccccc-CC-HHHHHHHHHHH-H
Confidence 4899999999999999999998775321 111234444444455533447889999998432 12 22233444433 3
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHH-HHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAV-HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
....+|++++|+|+++..+......+ ..+..+...+ .|+++|+||+|+... .. ..... . ..+.
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~--~pvIiV~NKiDL~~~--~~--~~~~~---------~-~~~~ 336 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHE--IPTLLVMNKIDMLDD--FE--PRIDR---------D-EENK 336 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCC--CCEEEEEEcccCCCc--hh--HHHHH---------H-hcCC
Confidence 34678999999999855444443332 3333332112 389999999998643 11 01111 0 0111
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+ ...|++++.++.+|++.|...+.
T Consensus 337 ~~~-----v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 337 PIR-----VWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred Cce-----EEEeCCCCCCHHHHHHHHHHHhh
Confidence 111 24688889999999999887764
|
|
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=109.10 Aligned_cols=158 Identities=13% Similarity=0.046 Sum_probs=87.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|..|+|||||++.|++...+..... .|.......+.. .+..+.++||||... +.......
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFEK-GNLSFTAFDMSGQGK-----------YRGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEEE-CCEEEEEEECCCCHh-----------hHHHHHHH
Confidence 589999999999999999997643221111 111111222233 567889999999543 12222233
Q ss_pred CCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhc-cccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~-~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
+.+++++++|+|.++..+-.. ...+..+..... .....|+++|+||+|+... ....++... +. +......
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~-----l~-~~~~~~~ 137 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKITQL-----LG-LENIKDK 137 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHHHHH-----hC-CccccCc
Confidence 467899999999873332211 222333322110 0112489999999998654 221111111 00 0000011
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
... ....|++.+.++.++++.|.
T Consensus 138 ~~~----~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 138 PWH----IFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred eEE----EEEeeCCCCCchHHHHHHHh
Confidence 111 23568888999999998764
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-13 Score=107.98 Aligned_cols=158 Identities=19% Similarity=0.177 Sum_probs=90.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... ..... .|....+. ..... ....+.++||+|..... .+.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~---~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~--- 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF-RESYI---PTIEDTYRQVISCSKNICTLQITDTTGSHQFP--------AMQ--- 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCcC---CcchheEEEEEEECCEEEEEEEEECCCCCcch--------HHH---
Confidence 5899999999999999999986542 11111 11111111 11221 23467799999976421 111
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccc-cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~-~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...+...+++++|+|+++.-+... ..++..+....+.. ...|+++|.||+|+... ..+.... .......
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~-------~~~~~~~ 137 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK--REVSSNE-------GAACATE 137 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc--CeecHHH-------HHHHHHH
Confidence 123346799999999884443332 33445555543321 22489999999998642 1111000 1111122
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
....+ ...|++.+.++.++++.|..+
T Consensus 138 ~~~~~------~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 138 WNCAF------METSAKTNHNVQELFQELLNL 163 (165)
T ss_pred hCCcE------EEeecCCCCCHHHHHHHHHhc
Confidence 22222 256888899999999887553
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=108.36 Aligned_cols=157 Identities=20% Similarity=0.177 Sum_probs=88.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|+|||||++.|++... .. ....+.+.......+.... ...+.++||+|... +.....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKF-KE-DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER-----------FRSVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CC-CCCCceeeeEEEEEEEECCEEEEEEEEECcchHH-----------HHHhHH
Confidence 3799999999999999999986653 11 1111111111112222211 24678999999532 112222
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
.....+|++++|+|+++..+-.. ..++..+......+. +++++.||+|.........++ ...+....+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 136 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNI--VVILVGNKSDLADQREVTFLE---------ASRFAQENG 136 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEEchhcchhccCCHHH---------HHHHHHHcC
Confidence 33457899999999984333222 233344444433333 899999999986431011111 222333333
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
..++ ..|+..+.++.++++.+..
T Consensus 137 ~~~~------~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 137 LLFL------ETSALTGENVEEAFLKCAR 159 (161)
T ss_pred CEEE------EEECCCCCCHHHHHHHHHH
Confidence 2222 5577788899999887654
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=109.70 Aligned_cols=156 Identities=15% Similarity=0.065 Sum_probs=88.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+++|..|+|||||++.|++... .. . ..|....+..+.+ ++..+.++||||... +.....
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~-~~-~---~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~ 77 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEV-VH-T---SPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSWN 77 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC-CC-c---CCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHHH
Confidence 47999999999999999999986543 11 1 1222233333444 567889999999643 222222
Q ss_pred ccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc-
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC- 176 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~- 176 (363)
..+.++|++++|+|.++.-+-. ....+..+....+ -...|++++.||.|+... ...++.... +. ....
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~~--~~~~~i~~~-----l~--~~~~~ 147 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKGA--MTPAEISES-----LG--LTSIR 147 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCCC--CCHHHHHHH-----hC--ccccc
Confidence 3345789999999987331111 1122222221111 012389999999998643 112221111 10 0000
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
...+. ....|+..+.++.++++.|.
T Consensus 148 ~~~~~----~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 148 DHTWH----IQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred CCceE----EEecccCCCCCHHHHHHHHh
Confidence 11111 23568888899999988764
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-13 Score=106.56 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=89.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|.+|+|||||++.+++... .. ....+.+.+.....+.. ++ ..+.++||+|... +....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEF-NL-DSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQER-----------YRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CC-CCCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHHHH
Confidence 5899999999999999999997653 11 11122222222223333 33 3578999999432 22222
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...+++++|+|+++..+-.+ ..++..+....... .|+++|.||+|+........+ . ...+....
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~~~~~~~~-~--------~~~~~~~~ 138 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVPTE-E--------AKAFAEKN 138 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccccCCHH-H--------HHHHHHHc
Confidence 233456799999999873333222 22334444433222 389999999998643101111 1 12222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
+..++ ..|+..+.++.++++.+...
T Consensus 139 ~~~~~------~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 139 GLSFI------ETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred CCEEE------EEECCCCCCHHHHHHHHHHH
Confidence 22222 56778888999998876543
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.6e-13 Score=106.39 Aligned_cols=154 Identities=21% Similarity=0.192 Sum_probs=87.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe--EEEEee---CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLK---DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
.+|+|+|..|+|||||++.+++... .. ....|....+ ..+... ....+.++||||... +.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~-~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~ 65 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIF-TK---DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-----------FD 65 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CC---CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-----------HH
Confidence 3799999999999999999996543 11 1112222221 222221 234688999999432 22
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
......+...|++++|+++++.-+-.. ..++..+..... + .|+++|.||.|+........++ ...+.
T Consensus 66 ~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~-~--~p~iiv~nK~Dl~~~~~v~~~~---------~~~~~ 133 (162)
T cd04106 66 AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-D--IPMVLVQTKIDLLDQAVITNEE---------AEALA 133 (162)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhcccccCCCHHH---------HHHHH
Confidence 222334567899999999873322222 223333333222 2 3899999999986541111111 12233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
...+..++ ..|+..+.++.++++.+..
T Consensus 134 ~~~~~~~~------~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 134 KRLQLPLF------RTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHcCCeEE------EEECCCCCCHHHHHHHHHH
Confidence 33333332 4567778889998887654
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-13 Score=111.70 Aligned_cols=161 Identities=20% Similarity=0.142 Sum_probs=94.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE--eEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.+|+|+|..|+|||||++.+++... ......|.... ...+...+ ...+.++||+|... ...
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~----~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-----------~~~ 65 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF----GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-----------GGK 65 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC----CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-----------HHH
Confidence 3799999999999999999986643 11122233222 22333322 34678999999432 122
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhcc-ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
.....+.++|++++|+|+++.-+-.. ..++..+...... ....++++|.||+|+.... ....+. ...+.
T Consensus 66 l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~-~v~~~~--------~~~~~ 136 (215)
T cd04109 66 MLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR-TVKDDK--------HARFA 136 (215)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc-ccCHHH--------HHHHH
Confidence 22233567899999999883323222 2344555554332 1122688899999986431 111111 22233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
...+..++ ..|++.+.++.++++.+...+..
T Consensus 137 ~~~~~~~~------~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 137 QANGMESC------LVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred HHcCCEEE------EEECCCCCCHHHHHHHHHHHHHh
Confidence 33332222 46888899999999988776543
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.8e-13 Score=108.88 Aligned_cols=164 Identities=17% Similarity=0.103 Sum_probs=92.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|.+|+|||||++.+++... .. ....|....+ ..... ++ ..+.++||+|.... ...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~-~~---~~~~t~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~-----------~~l 64 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYF-PQ---VYEPTVFENYVHDIFV-DGLHIELSLWDTAGQEEF-----------DRL 64 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CC---ccCCcceeeeEEEEEE-CCEEEEEEEEECCCChhc-----------ccc
Confidence 3799999999999999999986543 11 1111221111 12222 33 46789999996431 112
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc----CC-CchH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PKPL 169 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~----~~-~~~~ 169 (363)
....+..++++++|+++++.-+-... .++..+..... + .|+++|.||+|+... ....+.... .. .+..
T Consensus 65 ~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~--~piilvgNK~Dl~~~--~~~~~~~~~~~~~~v~~~~~ 139 (189)
T cd04134 65 RSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-G--VKLVLVALKCDLREA--RNERDDLQRYGKHTISYEEG 139 (189)
T ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccC--hhhHHHHhhccCCCCCHHHH
Confidence 22345678999999998844332222 34455544332 2 389999999998654 222211110 00 0001
Q ss_pred HHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+....+...+ ...|++.+.++.+++..+...+.
T Consensus 140 ~~~~~~~~~~~~-----~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 140 LAVAKRINALRY-----LECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred HHHHHHcCCCEE-----EEccCCcCCCHHHHHHHHHHHHh
Confidence 122222222112 25788888999999998876654
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-13 Score=106.12 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=91.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe--EEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+|++||..|+|||||++.+++.. |.. ....|+...+ ..+...+ ...+.++||+|... +....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~-f~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV-FDK---NYKATIGVDFEMERFEILGVPFSLQLWDTAGQER-----------FKCIA 66 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCC---CCCCceeeEEEEEEEEECCEEEEEEEEeCCChHH-----------HHhhH
Confidence 79999999999999999999654 321 1122322222 2222311 24678999999542 22222
Q ss_pred hccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcch-hhHHHHhccCCCchHHHHHHh
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-KTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~-~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...+.++|++++|+|+++.-+.. ...++..+....... ..++++|.||.|+..... ...++. ...+...
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~iilVgnK~Dl~~~~~~~~~~~~--------~~~~~~~ 137 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPS-SVLLFLVGTKKDLSSPAQYALMEQD--------AIKLAAE 137 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEChhcCccccccccHHH--------HHHHHHH
Confidence 34456889999999997322222 223344333322111 126889999999754311 011111 1222233
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+..++ ..|+..+.++.++++.+..++.+
T Consensus 138 ~~~~~~------e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 138 MQAEYW------SVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred cCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 333333 45778889999999988776644
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.5e-14 Score=109.70 Aligned_cols=157 Identities=14% Similarity=0.096 Sum_probs=85.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|..|+|||||++.+++....... .|....+.......+..+.++||+|... +.......
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~-----~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTI-----PTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccccc-----CccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 5899999999999999999977542111 1221222223332356789999999543 12222223
Q ss_pred CCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
+...|++++|+|.++..+-.. ...+..+..... ....|+++|+||+|.... ...++.... +. ....+...
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~i~~~-----~~-~~~~~~~~ 135 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEH-IKGVPVVLLANKQDLPGA--LTAEEITRR-----FK-LKKYCSDR 135 (160)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECcccccC--cCHHHHHHH-----cC-CcccCCCC
Confidence 456799999999873322111 112222211110 012389999999998543 222222111 00 00000000
Q ss_pred eEEecCCCcccccchhHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
.. .....|+..+.++.++++.|.
T Consensus 136 ~~---~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 136 DW---YVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred cE---EEEecccccCCChHHHHHHHh
Confidence 00 122578888999999998764
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-13 Score=109.29 Aligned_cols=161 Identities=15% Similarity=0.093 Sum_probs=91.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+++|..|+|||||++.+..... .. . ..|+......+.. .+..+.++|++|... +...
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~-~~-~---~pt~g~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~ 77 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-VT-T---IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPL 77 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-cc-c---cCCcceeEEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 3457999999999999999999974332 11 1 1122222223333 567889999999432 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccc--cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+.++|++++|+|+++.-+-.+ ....+...+... ...|++||.||.|+... ...+++... ++ +.
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-----l~--l~ 146 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDK-----LG--LH 146 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHH-----hC--cc
Confidence 3334567899999999873322111 122333332211 12389999999998654 222222221 10 00
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+.+. ...+|++++.++.++++.|...+
T Consensus 147 ~~~~~~~~---~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 147 SLRQRHWY---IQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred ccCCCceE---EEeccCCCCCCHHHHHHHHHHHH
Confidence 00111111 12457888999999999876654
|
|
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.8e-13 Score=103.34 Aligned_cols=162 Identities=17% Similarity=0.195 Sum_probs=107.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||.|+..+.+..- ......++-++.....+.+ ++ ..+.+|||.|. +.++...
T Consensus 10 FKiiliGds~VGKtCL~~Rf~~~~f--~e~~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAGQ-----------ERFrtit 75 (205)
T KOG0084|consen 10 FKIILIGDSGVGKTCLLLRFKDDTF--TESYISTIGVDFKIRTVEL-DGKTIKLQIWDTAGQ-----------ERFRTIT 75 (205)
T ss_pred EEEEEECCCCcChhhhhhhhccCCc--chhhcceeeeEEEEEEeee-cceEEEEEeeecccc-----------HHHhhhh
Confidence 4899999999999999999986553 1122233344555555655 44 36789999993 4566777
Q ss_pred hccCCCccEEEEEeecCCCCCH-HHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...++++|++|+|+|++..-+- .-..++..+.......+ +.++|.||+|+... .....- ....+....
T Consensus 76 ~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v--~~lLVGNK~Dl~~~--~~v~~~-------~a~~fa~~~ 144 (205)
T KOG0084|consen 76 SSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENV--PKLLVGNKCDLTEK--RVVSTE-------EAQEFADEL 144 (205)
T ss_pred HhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCC--CeEEEeeccccHhh--eecCHH-------HHHHHHHhc
Confidence 7888999999999999843332 33456666776665554 88999999998754 111100 011222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
+-..+ .++|++...++++.+..+...+...
T Consensus 145 ~~~~f-----~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 145 GIPIF-----LETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred CCcce-----eecccCCccCHHHHHHHHHHHHHHh
Confidence 22212 2678888889999888887776553
|
|
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=108.24 Aligned_cols=155 Identities=14% Similarity=0.061 Sum_probs=86.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|..|+|||||++.+++... . ....|....+..+.+ .+..+.++|+||.... .......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~----~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-V----TTIPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-C----CCCCCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence 589999999999999999998762 1 111222222233333 5678899999995431 1122223
Q ss_pred CCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 101 KDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
+...|++++|+|+++.-+.. ....+..+..... ....+++++.||+|.... ...++.... +.... ....
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~--~~~~~~~~~-----~~~~~--~~~~ 133 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA--LSVSELIEK-----LGLEK--ILGR 133 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc--cCHHHHHHh-----hChhh--ccCC
Confidence 35679999999987321111 1122222222111 112389999999998764 322222221 11110 0111
Q ss_pred eEEecCCCcccccchhHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
.. .....|++.+.++.++++.|.
T Consensus 134 ~~---~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 134 RW---HIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred cE---EEEEeeCCCCCCHHHHHHHHh
Confidence 11 122457778889998887664
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.3e-13 Score=106.53 Aligned_cols=161 Identities=19% Similarity=0.133 Sum_probs=91.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|||..|+|||||++.+.+.. |.. ....|+...+. .+.. ++ ..+.++||+|.... ...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~-f~~---~~~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK-FPS---EYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDY-----------DRL 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCC---CCCCceeeeeEEEEEE-CCEEEEEEEEECCCccch-----------hhh
Confidence 589999999999999999998543 321 12223322221 2223 33 46779999996542 112
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCC-----CchH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PKPL 169 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~-----~~~~ 169 (363)
....+..+|++++|+|.+++-+-... .++..+..... + .|+++|.||.|+... ..+.+.+.... .+..
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~~~--~~~~~~l~~~~~~~v~~~~~ 140 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-K--TPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETG 140 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhC--hhhHHHhhhccCCCcCHHHH
Confidence 22345678999999998844333332 24444443322 2 389999999998644 22222221100 0111
Q ss_pred HHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
..+....+...+ ...|++++.++.++++.+-.
T Consensus 141 ~~~a~~~~~~~~-----~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 141 EKLARDLKAVKY-----VECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHHHHHhCCcEE-----EEecCCCCCCHHHHHHHHHH
Confidence 222222222112 26688889999999886654
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-13 Score=109.03 Aligned_cols=162 Identities=16% Similarity=0.133 Sum_probs=92.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... .......+.........+.. ++ ..+.|+||||... +....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQER-----------FRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CccCcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHhh
Confidence 3799999999999999999986543 11111111111111111222 33 4678999999422 22222
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++|+|+++.-+-.. ..++..+....... .|+++|.||.|+........+ . ...+....
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~~~~~-~--------~~~l~~~~ 136 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSGERVVKRE-D--------GERLAKEY 136 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchhccccCHH-H--------HHHHHHHc
Confidence 233457899999999973322222 23444444443222 389999999998643001111 1 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
+..++ ..|+..+.++.+++..+...+...
T Consensus 137 ~~~~~------e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 137 GVPFM------ETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 32332 567888899999999988776553
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.3e-13 Score=106.02 Aligned_cols=152 Identities=20% Similarity=0.279 Sum_probs=98.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccC-----CCCCceeeEeEEEEee-CC--cEEEEEeCCCCCCCCCChHH---
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSEF--- 88 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~-----~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~--- 88 (363)
.+|+|||.+|.|||||+|+|+......+... ..+.|+.......... ++ -+++++|||||+|...++..
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWeP 126 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEP 126 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHH
Confidence 5899999999999999999986554332111 1222333333333221 22 36789999999986543321
Q ss_pred ----HHHHHHHHH----------hccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcc
Q 017924 89 ----VGKEIVKCL----------GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (363)
Q Consensus 89 ----~~~~~~~~~----------~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~ 153 (363)
+..+...++ ..-..++|+++|++..+ +.+...+...++.+.+.. |++-|+.|.|-+.-
T Consensus 127 I~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIakaDtlTl- 199 (336)
T KOG1547|consen 127 IEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKADTLTL- 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeecccccH-
Confidence 122222222 12235789999999876 788888888888777653 79999999998876
Q ss_pred hhhHHHHhccCCCchHHHHHHhcCCceEEec
Q 017924 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFD 184 (363)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (363)
+....|.+. ++.-+...+...+.+.
T Consensus 200 -eEr~~Fkqr-----I~~el~~~~i~vYPq~ 224 (336)
T KOG1547|consen 200 -EERSAFKQR-----IRKELEKHGIDVYPQD 224 (336)
T ss_pred -HHHHHHHHH-----HHHHHHhcCccccccc
Confidence 555556655 6656666555555544
|
|
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-13 Score=106.47 Aligned_cols=159 Identities=14% Similarity=0.106 Sum_probs=88.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|||.+|+|||||++.+++... .. ....+.+.+.....+.... ...+.++||+|... +.....
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~ 71 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRF-QP-VHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES-----------FRSITR 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 6999999999999999999997653 11 1111111222222222311 24678999999432 222223
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
......|++++|+|+++.-+-.. ..++..+....... .++++|.||.|+........++ ...+....+
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~~~~~~~~~---------~~~~~~~~~ 140 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLESRREVSYEE---------GEAFAKEHG 140 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCHHH---------HHHHHHHcC
Confidence 34457899999999873222211 22333333332222 3899999999987431111111 112222222
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+ ...|+..+.++.+++..+...+
T Consensus 141 ~~~------~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 141 LIF------METSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred CEE------EEEeCCCCCCHHHHHHHHHHHH
Confidence 222 2567778889999887766544
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-13 Score=115.72 Aligned_cols=167 Identities=22% Similarity=0.157 Sum_probs=109.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
+.-..|++||-+|||||||+|+|+|...+..+.-. .|.+.......+.++..+.+-||.||...- ...+...|...
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LF--ATLdpttR~~~l~~g~~vlLtDTVGFI~~L--P~~LV~AFksT 265 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLF--ATLDPTTRRIELGDGRKVLLTDTVGFIRDL--PHPLVEAFKST 265 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeecccccc--ccccCceeEEEeCCCceEEEecCccCcccC--ChHHHHHHHHH
Confidence 34469999999999999999999998875433322 344444555555457888999999997632 33445555555
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHH-HHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
+... ..+|.++.|+|+++......... ...+.++-..+ .|+++|+||+|.+.+ ......+.. .
T Consensus 266 LEE~-~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~--~~~~~~~~~-----------~ 329 (411)
T COG2262 266 LEEV-KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLED--EEILAELER-----------G 329 (411)
T ss_pred HHHh-hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCc--hhhhhhhhh-----------c
Confidence 5433 47899999999985533333333 33333331122 499999999998866 331111111 1
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.. +....|+.++.+++.|.+.|...+..
T Consensus 330 ~~-------~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 330 SP-------NPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred CC-------CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 11 22345888899999999999888764
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.1e-14 Score=108.16 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=80.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|.+|+|||||+|.|++... ... .|.. ..+ .. .++||||.... .....+.+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~----~~~--~t~~-----~~~-~~---~~iDt~G~~~~-------~~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI----LYK--KTQA-----VEY-ND---GAIDTPGEYVE-------NRRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc----ccc--ccee-----EEE-cC---eeecCchhhhh-------hHHHHHHHHHH
Confidence 799999999999999999997753 111 1211 112 11 48999996321 11111222223
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCce
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 180 (363)
+.++|++++|+|+++..+.....++. .++ .++++|+||+|+.... ...+ . ...+....+...
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~----~p~ilv~NK~Dl~~~~-~~~~-~--------~~~~~~~~~~~~ 121 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFAS----IFV----KPVIGLVTKIDLAEAD-VDIE-R--------AKELLETAGAEP 121 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHH----hcc----CCeEEEEEeeccCCcc-cCHH-H--------HHHHHHHcCCCc
Confidence 67899999999997444433322222 222 2899999999986431 1111 1 222333322211
Q ss_pred EEecCCCcccccchhHHHHHHHHH
Q 017924 181 VLFDNKTKDEAKGTEQVRQLLSLV 204 (363)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~l 204 (363)
....|++.+.+++++++.+
T Consensus 122 -----~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 122 -----IFEISSVDEQGLEALVDYL 140 (142)
T ss_pred -----EEEEecCCCCCHHHHHHHH
Confidence 1256778888999988765
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=111.09 Aligned_cols=164 Identities=9% Similarity=0.006 Sum_probs=90.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+++|.+|||||||++.+++.......+ |.......+.. ++..+.++|++|... .....
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~~ 78 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQP-----TQHPTSEELAI-GNIKFTTFDLGGHQQ-----------ARRLW 78 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccCC-----ccccceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 44899999999999999999999764311111 22222233333 567888999999643 12222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCc-chhhHHHHhccCCCchHHHHHH
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
..++..+|++++|+|+++. ..-. .....+..++.. ....|+++|+||.|+... +...+...+.- .....
T Consensus 79 ~~~~~~ad~ii~vvD~~~~-~~~~-~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l------~~~~~ 150 (184)
T smart00178 79 KDYFPEVNGIVYLVDAYDK-ERFA-ESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGL------TNTTG 150 (184)
T ss_pred HHHhCCCCEEEEEEECCcH-HHHH-HHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCC------Ccccc
Confidence 3345688999999998722 1111 111122222211 012389999999998533 11223323221 00000
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.+...-.........|+..+.++.++++.|..
T Consensus 151 ~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 151 SKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 00000000112346788888999999998754
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-13 Score=106.93 Aligned_cols=156 Identities=21% Similarity=0.145 Sum_probs=89.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee--EeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|+.|+|||||+|.+++... ......+... ....+.+. ....+.++|+||... +...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~-----------~~~~ 66 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEF----SENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER-----------YRSL 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC----CCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHH-----------HHHH
Confidence 6899999999999999999997764 1111112111 11222221 234678999999422 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCH-HHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+.+.|++++|+|.++.-+- ....++..+....... .+++++.||.|.........++ ...+...
T Consensus 67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~~~~~~---------~~~~~~~ 135 (163)
T cd01860 67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPN--IIIALVGNKADLESKRQVSTEE---------AQEYADE 135 (163)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccCcCCHHH---------HHHHHHH
Confidence 22234578999999998722221 2233444444443222 2789999999976431011111 1222233
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.+..+ ...|+.++.++.++++.+...
T Consensus 136 ~~~~~------~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 136 NGLLF------FETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred cCCEE------EEEECCCCCCHHHHHHHHHHH
Confidence 23222 356777888999999887654
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.6e-13 Score=109.40 Aligned_cols=158 Identities=14% Similarity=0.061 Sum_probs=93.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE--EEee-CCcEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|||..|+|||||++.++... |.. ....|+...+.. +... ....+.++||+|....
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~-f~~---~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------- 75 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE-FEK---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------- 75 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCC-CCC---ccCCccceeEEEEEEEECCeEEEEEEEECCCchhh-----------
Confidence 445799999999999999999876433 211 111222222222 2221 2357789999996542
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.......+.+.+++++|+|.+++.+-.. ..++..+...+. . .++++|.||+|+... ....+. + .+
T Consensus 76 ~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~--~piilvgNK~Dl~~~--~v~~~~--------~-~~ 141 (219)
T PLN03071 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-N--IPIVLCGNKVDVKNR--QVKAKQ--------V-TF 141 (219)
T ss_pred hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEEchhhhhc--cCCHHH--------H-HH
Confidence 1222234567899999999984433322 234444544432 2 389999999997532 111111 1 12
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
....+..|+ .+|++.+.++.+++..+...+.
T Consensus 142 ~~~~~~~~~------e~SAk~~~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 142 HRKKNLQYY------EISAKSNYNFEKPFLYLARKLA 172 (219)
T ss_pred HHhcCCEEE------EcCCCCCCCHHHHHHHHHHHHH
Confidence 222222332 5688889999999988876654
|
|
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-13 Score=106.95 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=87.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee-eEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|||||||++.+++... .. ....|+. .....+.. ++ ..+.++||+|..... .+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~~~-- 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF-VE---KYDPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQFT--------AMR-- 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-Cc---ccCCchhhhEEEEEEE-CCEEEEEEEEECCCccccc--------hHH--
Confidence 5899999999999999999985542 21 1111221 11122223 33 356789999965421 122
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhH-HHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l-~~~~~~~~~~~~~~~~~ 174 (363)
...+.+.|++++|++.++.-+-.. ..++..+...... ...|+++|.||+|+... ..+ .+. ...+..
T Consensus 67 -~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~~~--------~~~~~~ 134 (163)
T cd04136 67 -DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLEDE--RVVSREE--------GQALAR 134 (163)
T ss_pred -HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--ceecHHH--------HHHHHH
Confidence 223457899999999873322222 2233344433221 12389999999998643 111 111 112222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
..+..+ ...|++.+.++.++++.+..
T Consensus 135 ~~~~~~------~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 135 QWGCPF------YETSAKSKINVDEVFADLVR 160 (163)
T ss_pred HcCCeE------EEecCCCCCCHHHHHHHHHH
Confidence 223222 25677888999999887754
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=109.77 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=88.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe--eCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+++|..|+|||||++.+++.......++.+ .......+.. ..+..+.++||+|... +...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKG---FNTEKIKVSLGNSKGITFHFWDVGGQEK-----------LRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccc---cceeEEEeeccCCCceEEEEEECCCcHh-----------HHHH
Confidence 3799999999999999999998654311111111 1111111211 1345788999999532 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCc-chhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+.++|++++|+|+++.-+-.+ ...+..+..... ....|+++|+||+|.... ....++.++.. . .
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~------~---~ 138 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNALSVSEVEKLLAL------H---E 138 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccccCCHHHHHHHhCc------c---c
Confidence 2333567899999999873211111 112222322221 122489999999998643 11112211111 0 0
Q ss_pred hcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.... ...+ ...|+..+.++.++++.|.+.+
T Consensus 139 ~~~~~~~~~----~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 139 LSASTPWHV----QPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred cCCCCceEE----EEeecccCCCHHHHHHHHHHHH
Confidence 0000 1111 2568888999999999876654
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-13 Score=109.56 Aligned_cols=159 Identities=18% Similarity=0.209 Sum_probs=89.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+|+|+|..|+|||||++.+++.. |... ...+.. ......... ++. .+.++||+|... +.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~-f~~~-~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH-FVET-YDPTIE-DSYRKQVVV-DGQPCMLEVLDTAGQEE-----------YTALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcc-CCCchH-hhEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHHH
Confidence 58999999999999999998543 2211 111111 111112222 333 477899999543 111222
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhcc-ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
..+.+.|++++|+|+++.-+-.. ..++..+...... ....|+++|.||+|+... ..+... . ...+....
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~--~~v~~~--~-----~~~~~~~~ 136 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE--REVSTE--E-----GAALARRL 136 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc--CccCHH--H-----HHHHHHHh
Confidence 33457899999999874333222 2334444443221 122389999999998643 111100 0 11222333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+..++ ..|+..+.++.+++..+...+.
T Consensus 137 ~~~~~------e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 137 GCEFI------EASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred CCEEE------EecCCCCCCHHHHHHHHHHHHH
Confidence 32222 5678888999999998776543
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=130.18 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=100.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|+.|+|||||++.|.+.... . ...++.|.....+.+.+ ++..++||||||..++ .....
T Consensus 290 ~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~-~e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F-----------~~m~~ 355 (787)
T PRK05306 290 PPVVTIMGHVDHGKTSLLDAIRKTNVA-A-GEAGGITQHIGAYQVET-NGGKITFLDTPGHEAF-----------TAMRA 355 (787)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcc-c-cccCceeeeccEEEEEE-CCEEEEEEECCCCccc-----------hhHHH
Confidence 369999999999999999999865431 1 22344555555566666 6788999999997653 11222
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.+....|++++|+++++.........+..+.. .+ .|+++++||+|+...+...+...+.. ...+...++.
T Consensus 356 rga~~aDiaILVVdAddGv~~qT~e~i~~a~~-~~----vPiIVviNKiDl~~a~~e~V~~eL~~-----~~~~~e~~g~ 425 (787)
T PRK05306 356 RGAQVTDIVVLVVAADDGVMPQTIEAINHAKA-AG----VPIIVAINKIDKPGANPDRVKQELSE-----YGLVPEEWGG 425 (787)
T ss_pred hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh-cC----CcEEEEEECccccccCHHHHHHHHHH-----hcccHHHhCC
Confidence 33456799999999986666665555554433 22 28999999999864311112111111 1111122222
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.+. ....|+.++.++.+|++.|..
T Consensus 426 ~vp----~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 426 DTI----FVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred Cce----EEEEeCCCCCCchHHHHhhhh
Confidence 111 135688889999999988764
|
|
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-13 Score=106.99 Aligned_cols=156 Identities=22% Similarity=0.180 Sum_probs=87.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee-EeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+|+|+|..|+|||||++++++... .... ..|... ....... ++ ..+.++||||..... .+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~-~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~--------~~~~-- 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF-VDDY---DPTIEDSYRKQIEI-DGEVCLLDILDTAGQEEFS--------AMRD-- 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-Cccc---CCchhhhEEEEEEE-CCEEEEEEEEECCCcccch--------HHHH--
Confidence 799999999999999999987543 2111 112211 1122222 33 456789999965421 1211
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
..+...+++++|+++++.-+-.. ..+...+...... ...|+++|.||+|+........+ . ...+....
T Consensus 67 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~~~~~~~-~--------~~~~~~~~ 135 (164)
T smart00173 67 -QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESERVVSTE-E--------GKELARQW 135 (164)
T ss_pred -HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccceEcHH-H--------HHHHHHHc
Confidence 22346799999999873322222 1223333332221 12389999999998643101111 1 12223333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ ..|+..+.++.++++.+.+.+
T Consensus 136 ~~~~~------~~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 136 GCPFL------ETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred CCEEE------EeecCCCCCHHHHHHHHHHHH
Confidence 32332 567788899999998876544
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.4e-13 Score=108.56 Aligned_cols=161 Identities=19% Similarity=0.220 Sum_probs=89.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe--EEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.+|+|+|..|+|||||++.+++... ..... ..|+...+ ..+.. ++. .+.++||+|.... ..+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~-~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~--------~~~-- 66 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRF-LVGPY--QNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERY--------EAM-- 66 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCc-CCcCc--ccceeeEEEEEEEEE-CCEEEEEEEEECCCchhh--------hhh--
Confidence 3899999999999999999986543 21111 12222222 12233 333 4569999995431 112
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+.+.|++++|+|+++.-+-.. ..++..+.... . ..|+++|.||+|+.... ...... . ......+..
T Consensus 67 -~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~--~~piilv~nK~Dl~~~~-~~~~~v-~---~~~~~~~~~ 137 (193)
T cd04118 67 -SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-E--HCKIYLCGTKSDLIEQD-RSLRQV-D---FHDVQDFAD 137 (193)
T ss_pred -hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC-C--CCCEEEEEEcccccccc-cccCcc-C---HHHHHHHHH
Confidence 2223457899999999873322111 23344443321 1 23899999999976431 000000 0 001222223
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+..++ ..|+..+.++.++++.+.+.+.
T Consensus 138 ~~~~~~~------~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 138 EIKAQHF------ETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 3222222 4577788899999998876653
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.9e-13 Score=105.18 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=89.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... .. ....+.+.+.....+.. ++ ..+.++||+|... +....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~-----------~~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY-TE-SYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQER-----------FRTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CC-CCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHh-----------HHHHH
Confidence 5899999999999999999986543 11 11112222222223333 33 3678999999432 11122
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++|+|.++.-+-.. ..++..+....... .++++|.||+|+........++ ...+....
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 137 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTDKRVVDYSE---------AQEFADEL 137 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhcccccCCCHHH---------HHHHHHHc
Confidence 223457899999999873222111 12333333332122 3899999999976441111111 12222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ ..|+..+.++.+++..+.+.+
T Consensus 138 ~~~~~------~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 138 GIPFL------ETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred CCeEE------EEECCCCcCHHHHHHHHHHHH
Confidence 32232 567778889999998876654
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-13 Score=106.70 Aligned_cols=154 Identities=17% Similarity=0.153 Sum_probs=88.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe--EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.+|+|+|..|+|||||++.+++... . .....|+.... ..+.. ++ ..+.++||+|... +..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~-~---~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~ 66 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF-M---ADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQER-----------FRA 66 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-C---CCCCcccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 5899999999999999999986642 2 11222222222 22223 33 3578999999432 222
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhH-HHHhccCCCchHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEIL 173 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l-~~~~~~~~~~~~~~~~ 173 (363)
.....+.+++++++|+|.+++-+-.. ..++..+....... .++++|.||+|+... ..+ .+. ...+.
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~--~~~~~~~--------~~~~~ 134 (166)
T cd04122 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQ--RDVTYEE--------AKQFA 134 (166)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCcCHHH--------HHHHH
Confidence 23334567899999999873322222 22333333332222 379999999998644 111 111 22222
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
...+..++ ..|+..+.++.+++..+...
T Consensus 135 ~~~~~~~~------e~Sa~~~~~i~e~f~~l~~~ 162 (166)
T cd04122 135 DENGLLFL------ECSAKTGENVEDAFLETAKK 162 (166)
T ss_pred HHcCCEEE------EEECCCCCCHHHHHHHHHHH
Confidence 22222222 56788889999988766543
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.6e-13 Score=106.44 Aligned_cols=160 Identities=15% Similarity=0.081 Sum_probs=89.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-----------CCcEEEEEeCCCCCCCCCChHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------DGQVVNVIDTPGLFDLSAGSEF 88 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~l~DtpG~~~~~~~~~~ 88 (363)
.+|+|+|..|+|||||++.+++... .... ..++..+.......+. ....+.++||+|..
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~-~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------- 74 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKF-NPKF-ITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE-------- 74 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CccC-CCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH--------
Confidence 7999999999999999999986542 2111 1111111111112110 12467899999932
Q ss_pred HHHHHHHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCc
Q 017924 89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPK 167 (363)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~ 167 (363)
.+.......+..+|++++|+|+++.-+-.. ..++..+..... ....++++|.||+|+........+ .
T Consensus 75 ---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~v~~~-~------- 142 (180)
T cd04127 75 ---RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVSEE-Q------- 142 (180)
T ss_pred ---HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcCccCHH-H-------
Confidence 233333344567899999999873322222 223333333211 112379999999998643101111 1
Q ss_pred hHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+....+..+ ...|+..+.++.++++.+...+
T Consensus 143 -~~~~~~~~~~~~------~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 143 -AKALADKYGIPY------FETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred -HHHHHHHcCCeE------EEEeCCCCCCHHHHHHHHHHHH
Confidence 222333333222 2568888899999998876644
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-13 Score=106.71 Aligned_cols=157 Identities=18% Similarity=0.184 Sum_probs=87.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|||||||++.++... |... ...|+... ...+.. ++ ..+.++||+|.... ..+.
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~-~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~--------~~~~-- 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI-FVEK---YDPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQF--------TAMR-- 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC-CCcc---cCCcchheEEEEEEE-CCEEEEEEEEECCCcccc--------hhHH--
Confidence 689999999999999999988442 2211 11122111 122223 33 35679999996532 1122
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...+.+.|++++|+|.++.-+-.+ ..++..+..... ....|+++|.||+|+........+ . ...+...
T Consensus 67 -~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~ 135 (164)
T cd04175 67 -DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKE-Q--------GQNLARQ 135 (164)
T ss_pred -HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhccEEcHH-H--------HHHHHHH
Confidence 223456799999999873322222 223344433221 112389999999998643001111 0 1122222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|++.+.++.+++..+...+
T Consensus 136 ~~~~~~------~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 136 WGCAFL------ETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred hCCEEE------EeeCCCCCCHHHHHHHHHHHh
Confidence 232222 567788899999998876543
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.7e-13 Score=104.43 Aligned_cols=162 Identities=23% Similarity=0.151 Sum_probs=91.4
Q ss_pred EEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCC
Q 017924 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG 103 (363)
Q Consensus 24 lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (363)
|+|..|+|||||+|.|++......... .+.+...............+.++||||+.+...........+. .....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~----~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPV-PGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELAR----RVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCC-CCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHH----HHHHh
Confidence 589999999999999998765322222 2223333333333323678899999998875433322111222 22346
Q ss_pred ccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEe
Q 017924 104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF 183 (363)
Q Consensus 104 ~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (363)
+|+++++++............+..... . ..++++|+||+|.... ......... ..........
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-~----~~~~ivv~nK~D~~~~--~~~~~~~~~-----~~~~~~~~~~----- 138 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE-R----GKPVLLVLNKIDLLPE--EEEEELLEL-----RLLILLLLLG----- 138 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh-c----CCeEEEEEEccccCCh--hhHHHHHHH-----HHhhcccccC-----
Confidence 799999999984544444432222221 1 2389999999998866 333332210 0001111111
Q ss_pred cCCCcccccchhHHHHHHHHHHHH
Q 017924 184 DNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 184 ~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
......++..+.++.++++.+...
T Consensus 139 ~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 139 LPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred CceEEEeeeccCCHHHHHHHHHhh
Confidence 112244666677888888876543
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=8e-13 Score=104.60 Aligned_cols=156 Identities=15% Similarity=0.130 Sum_probs=87.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc-cccccccCCCCCceeeEe--EEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR-KAFKASAGSSGVTKTCEM--KTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~-~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
++|+|+|..|+|||||++.|.+. ..|.. ....|+...+ ..+... ....+.++||+|.. .+.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~ 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPK---NYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE-----------LYS 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCc---cCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH-----------HHH
Confidence 48999999999999999999853 22221 1222222221 222221 23578899999942 222
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
.........+|++++|+|.++.-+-.. ..++..+.... ...++++|.||.|.... ..+.... ...+.
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~-------~~~~~ 134 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK--AEVTDAQ-------AQAFA 134 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc--cCCCHHH-------HHHHH
Confidence 222334467899999999873322221 23344443332 12389999999998644 2111110 11111
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
...+..++ ..|+.++.++.++++.+.+.
T Consensus 135 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 135 QANQLKFF------KTSALRGVGYEEPFESLARA 162 (164)
T ss_pred HHcCCeEE------EEeCCCCCChHHHHHHHHHH
Confidence 22122222 46777888999999877654
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-13 Score=109.41 Aligned_cols=167 Identities=10% Similarity=0.008 Sum_probs=91.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|++|||||||++.|++...... ..|.......+.+ ++..+.++|+||... +...
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~-----~~T~~~~~~~i~~-~~~~~~l~D~~G~~~-----------~~~~ 79 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELTI-GNIKFKTFDLGGHEQ-----------ARRL 79 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccCcceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 3458999999999999999999997653111 1122222233444 567888999999432 1122
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCc-chhhHHHHhccCCCchHHH--
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKE-- 171 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~~-- 171 (363)
......+.+++++|+|.++.-+-. .....+...+.. ....|++++.||+|+... ....+..++.. .+....+
T Consensus 80 ~~~~~~~ad~iilV~D~~~~~s~~--~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~ 156 (190)
T cd00879 80 WKDYFPEVDGIVFLVDAADPERFQ--ESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGL-YGTTTGKGV 156 (190)
T ss_pred HHHHhccCCEEEEEEECCcHHHHH--HHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCc-ccccccccc
Confidence 223345779999999987221111 111222222221 122489999999998643 11233333321 0000000
Q ss_pred -HHHhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 172 -ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 172 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.......... ...+|++.+.++.++++.+...
T Consensus 157 ~~~~~~~~~~~----~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 157 SLKVSGIRPIE----VFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccccCceeEE----EEEeEecCCCChHHHHHHHHhh
Confidence 0000011111 2367888999999999987653
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.4e-13 Score=105.35 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=87.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce--eeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.+|+|+|.+|||||||++.+++... ......+. ......+.+ .+ ..+.++|++|... +..
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~ 71 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLF----PPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQER-----------FRS 71 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 6999999999999999999985543 11111222 222223333 33 3567899999532 112
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhH-HHHhccCCCchHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEIL 173 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l-~~~~~~~~~~~~~~~~ 173 (363)
.....+...|++++|+|.++.-+... ..++..+....... .++++|.||+|.... ..+ ..... .+.
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~~--~~i~~~~~~--------~~~ 139 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAER--REVSQQRAE--------EFS 139 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cccCHHHHH--------HHH
Confidence 22223457899999999873322211 12334444433323 278999999998643 111 11111 111
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
......++ ..|+..+.++.++++.+...
T Consensus 140 ~~~~~~~~------~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 140 DAQDMYYL------ETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred HHcCCeEE------EeeCCCCCCHHHHHHHHHHH
Confidence 22121222 56777888999999887653
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-14 Score=110.57 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=84.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|.+|+|||||+|.|.|... ... .+. ...+ ... .+|||||..... ......+ ...
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~----~~~--~~~-----~v~~-~~~--~~iDtpG~~~~~---~~~~~~~----~~~ 61 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT----LAR--KTQ-----AVEF-NDK--GDIDTPGEYFSH---PRWYHAL----ITT 61 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc----cCc--cce-----EEEE-CCC--CcccCCccccCC---HHHHHHH----HHH
Confidence 799999999999999999998653 111 111 1112 111 269999976432 1112222 223
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCce
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 180 (363)
..++|++++|+|++...+... ..+... +. ..++++++||+|+...+ .+. +.+.+...+..
T Consensus 62 ~~~ad~il~v~d~~~~~s~~~----~~~~~~-~~--~~~ii~v~nK~Dl~~~~---~~~---------~~~~~~~~~~~- 121 (158)
T PRK15467 62 LQDVDMLIYVHGANDPESRLP----AGLLDI-GV--SKRQIAVISKTDMPDAD---VAA---------TRKLLLETGFE- 121 (158)
T ss_pred HhcCCEEEEEEeCCCcccccC----HHHHhc-cC--CCCeEEEEEccccCccc---HHH---------HHHHHHHcCCC-
Confidence 457899999999873322211 112222 11 12789999999975431 111 22223232221
Q ss_pred EEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
......|++.+.++.+|++.+.+.+.
T Consensus 122 ---~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 122 ---EPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred ---CCEEEEECCCccCHHHHHHHHHHhch
Confidence 12235688889999999998887763
|
|
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.9e-13 Score=105.99 Aligned_cols=114 Identities=15% Similarity=0.092 Sum_probs=69.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|..|||||||++.|++... .... .|.......+.. ++..+.++|++|... +.......
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~--~~~~---~t~g~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP--KKVA---PTVGFTPTKLRL-DKYEVCIFDLGGGAN-----------FRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC--cccc---CcccceEEEEEE-CCEEEEEEECCCcHH-----------HHHHHHHH
Confidence 489999999999999999997622 1111 122122223334 677889999999432 22222334
Q ss_pred CCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
+..+|++++|+|.++..+-.+ ...+..+..... ....|+++|.||.|+...
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~~ 115 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKKNA 115 (167)
T ss_pred HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCcCC
Confidence 567899999999873322221 222332222111 012489999999998654
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-12 Score=104.02 Aligned_cols=162 Identities=18% Similarity=0.095 Sum_probs=89.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... .. ....+...+.......+ .+ ..+.++|+||... +....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF-SN-QYKATIGADFLTKEVTV-DDKLVTLQIWDTAGQER-----------FQSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-Cc-CcCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHhHH
Confidence 3899999999999999999986643 11 11111121122222333 33 3466999999533 11222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
...+.+++++++++|+.+..+-... .+...+...+.. ....|+++|+||.|+........+ . ...+..
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~--------~~~~~~ 137 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTK-K--------AQQWCQ 137 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHH-H--------HHHHHH
Confidence 2334578999999998733222222 222222222221 112389999999999732101111 1 222333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+...+ ...|+..+.++.++++.+...+.
T Consensus 138 ~~~~~~~-----~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 138 SNGNIPY-----FETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred HcCCceE-----EEEECCCCCCHHHHHHHHHHHHH
Confidence 3331122 24677788999999998776553
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.2e-13 Score=108.09 Aligned_cols=160 Identities=14% Similarity=0.033 Sum_probs=90.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee--eEeEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.+|+|+|..|+|||||++.+++... .. ....|+. .....+.+. ....+.++||+|... +..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~-~~---~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-----------~~~ 65 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF-SQ---HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER-----------FGG 65 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CC---CCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh-----------hhh
Confidence 3799999999999999999986542 11 1112322 222233332 134678999999633 222
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhc--cccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~--~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.....+.+++++++|+|+++.-+-... .++..+..... .....|+++|.||.|+........+ . +..+
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~-~--------~~~~ 136 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGE-Q--------MDQF 136 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHH-H--------HHHH
Confidence 223345678999999998733332222 22333333211 1122389999999998632001111 1 2223
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+...+ ...|++.+.++.++++.+...+
T Consensus 137 ~~~~~~~~~-----~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 137 CKENGFIGW-----FETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred HHHcCCceE-----EEEeCCCCCCHHHHHHHHHHHH
Confidence 333331112 2568888899999999877655
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-13 Score=109.17 Aligned_cols=158 Identities=18% Similarity=0.199 Sum_probs=89.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc------cccc--cC-----CCCCceeeEeEEEEe----eCCcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA------FKAS--AG-----SSGVTKTCEMKTTVL----KDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~------~~~~--~~-----~~~~t~~~~~~~~~~----~~~~~~~l~DtpG~~~~ 82 (363)
.+|+++|..|+|||||++.|++... +... .. ..+.+.........+ ..+..+.++||||..+.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 3799999999999999999986421 0000 00 011222222112212 13456789999997652
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~ 162 (363)
... ...++.++|++++|+|++...+..+...+..+.. .. .++++|+||+|+... . ......
T Consensus 81 -------~~~----~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~--~~iiiv~NK~Dl~~~--~-~~~~~~ 141 (179)
T cd01890 81 -------SYE----VSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NN--LEIIPVINKIDLPSA--D-PERVKQ 141 (179)
T ss_pred -------HHH----HHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cC--CCEEEEEECCCCCcC--C-HHHHHH
Confidence 111 2223346899999999975555555444433221 12 279999999998643 1 111111
Q ss_pred cCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
. +...+ +... ......|+..+.++.+|++.+...
T Consensus 142 ~-----~~~~~---~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 142 Q-----IEDVL---GLDP---SEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred H-----HHHHh---CCCc---ccEEEeeccCCCCHHHHHHHHHhh
Confidence 2 22221 2110 112367888899999999887654
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.3e-13 Score=104.07 Aligned_cols=154 Identities=19% Similarity=0.171 Sum_probs=86.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE--EEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK--TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+++|..|+|||||++.|++... ......|....+. .+... ....+.++|+||... +...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~ 65 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKF----DENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----------FRSI 65 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC----CCccCCceeeeeEEEEEEECCEEEEEEEEecCChHH-----------HHHH
Confidence 3799999999999999999987765 1111112222222 22221 235678999999532 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.......+|++++++|.++.-+... ..++..+...... ..++++++||+|..... ....+. ...+...
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~-~~~~~~--------~~~~~~~ 134 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPE--NIPIILVGNKIDLEDQR-QVSTEE--------AQQFAKE 134 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccccccc-cccHHH--------HHHHHHH
Confidence 2333456899999999873211111 2233333333211 23899999999986221 111111 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
....++ ..|+..+.++.++++.+.
T Consensus 135 ~~~~~~------~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 135 NGLLFF------ETSAKTGENVEELFQSLA 158 (159)
T ss_pred cCCeEE------EEecCCCCCHHHHHHHHh
Confidence 232333 456666778888887653
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.1e-13 Score=105.36 Aligned_cols=157 Identities=18% Similarity=0.124 Sum_probs=87.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|+|||||++.|++... .. ........+.....+... ....+.++||||.... .....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~ 67 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTF-DP-DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF-----------RTLTS 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-Cc-ccCCcccceEEEEEEEECCEEEEEEEEECCCchhh-----------hhhhH
Confidence 4899999999999999999997643 11 111111212222222231 1246789999995431 11112
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
......|++++|+|.++.-+-.. ..++..+..... ....++++|.||+|..... ...+ . ...+....+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~-~~~~-~--------~~~~~~~~~ 136 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENRE-VTRE-E--------GLKFARKHN 136 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccc-cCHH-H--------HHHHHHHcC
Confidence 23457899999999873322222 223344444432 1223789999999987331 1111 1 112222222
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
-.++ ..|+..+.++.++++.+.+
T Consensus 137 ~~~~------~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 137 MLFI------ETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred CEEE------EEecCCCCCHHHHHHHHHH
Confidence 2222 4577778899998887644
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.2e-13 Score=107.51 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=90.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|||..|+|||||++.+++... .. ....+.........+.. ++ ..+.++||+|... +...
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~-----------~~~~ 71 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF-SG-SYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQER-----------FRTI 71 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CC-CcCccccceeEEEEEEE-CCEEEEEEEEeCCCchh-----------HHHH
Confidence 37999999999999999999986643 11 11111111122222223 23 3677999999533 1122
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhH-HHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l-~~~~~~~~~~~~~~~~~ 174 (363)
....+...+++++|+|+++.-+-.. ..++..+..... ..++++|.||+|+... ..+ ... ...+..
T Consensus 72 ~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~piivVgNK~Dl~~~--~~~~~~~--------~~~~~~ 138 (199)
T cd04110 72 TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD---DVCKVLVGNKNDDPER--KVVETED--------AYKFAG 138 (199)
T ss_pred HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccc--cccCHHH--------HHHHHH
Confidence 2233456799999999874332222 223444433322 2388999999998643 111 111 112222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+..++ ..|+..+.++.++++.+...+.
T Consensus 139 ~~~~~~~------e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 139 QMGISLF------ETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred HcCCEEE------EEECCCCcCHHHHHHHHHHHHH
Confidence 2232222 5677788999999998776553
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-12 Score=104.01 Aligned_cols=154 Identities=17% Similarity=0.132 Sum_probs=90.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-C--CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+|+|+|..|||||||++.++.... .. ....|....+....+. + ...+.++||+|..... .+.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~-~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~--- 66 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF-EK---KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFG--------GLR--- 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CC---CCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhc--------ccc---
Confidence 799999999999999999874432 11 1112322222222111 2 3467899999965421 111
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++|+|.++.-+... ..++..+....+ + .|+++|.||+|+... ..... ...+....
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~piiiv~nK~Dl~~~--~~~~~---------~~~~~~~~ 132 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-N--IPIVLCGNKVDIKDR--KVKAK---------QITFHRKK 132 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEEchhcccc--cCCHH---------HHHHHHHc
Confidence 122357899999999873333222 234455555443 2 389999999998633 11111 11122221
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
...++ .+|+..+.++.++++.|.+.+.
T Consensus 133 ~~~~~------e~Sa~~~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 133 NLQYY------EISAKSNYNFEKPFLWLARKLL 159 (166)
T ss_pred CCEEE------EEeCCCCCChHHHHHHHHHHHH
Confidence 22222 5688889999999998876654
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-13 Score=123.35 Aligned_cols=162 Identities=18% Similarity=0.181 Sum_probs=95.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccccccc--------------c---------------cCCCCCceeeEeEEEEeeC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------S---------------AGSSGVTKTCEMKTTVLKD 67 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~ 67 (363)
.+..+|+|+|+.++|||||++.|++...... + .-..+.|.+.....+.+ +
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~ 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-D 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-C
Confidence 4558999999999999999999984422100 0 00244566665555555 6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCC--CCCHHHHHHHHHHHHHhccccccceEEEEe
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n 145 (363)
+..++|+||||..+. .+.+......+|++++|+|++. .+.......+..+.. ++. .++++++|
T Consensus 83 ~~~i~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivviN 147 (425)
T PRK12317 83 KYYFTIVDCPGHRDF-----------VKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVAIN 147 (425)
T ss_pred CeEEEEEECCCcccc-----------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEEEE
Confidence 788999999996442 1111222357899999999985 444444454444433 332 26889999
Q ss_pred CCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHH
Q 017924 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQL 200 (363)
Q Consensus 146 ~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 200 (363)
|+|+...+...++..... +..++...+.... .......|+..+.++.++
T Consensus 148 K~Dl~~~~~~~~~~~~~~-----i~~~l~~~g~~~~-~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 148 KMDAVNYDEKRYEEVKEE-----VSKLLKMVGYKPD-DIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred ccccccccHHHHHHHHHH-----HHHHHHhhCCCcC-cceEEEeecccCCCcccc
Confidence 999875321233333333 4444444332100 001124566666676653
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.4e-13 Score=109.57 Aligned_cols=119 Identities=18% Similarity=0.087 Sum_probs=75.3
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeC
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~ 146 (363)
.+..++++||||..+. .+.....+. ....|++++|+++...+...+...+.++... +. |+++|+||
T Consensus 82 ~~~~i~liDtpG~~~~-------~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~i----p~ivvvNK 147 (224)
T cd04165 82 SSKLVTFIDLAGHERY-------LKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALAL-NI----PVFVVVTK 147 (224)
T ss_pred CCcEEEEEECCCcHHH-------HHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEC
Confidence 4678899999995431 222222211 1357999999999877888887777776653 32 79999999
Q ss_pred CCCCCcchhhHHHHhccCCCchHHHHHHhcCCc--------------------eEEecCCCcccccchhHHHHHHHHHHH
Q 017924 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR--------------------CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 147 ~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
+|.... ..+...+.. +...+...+.. ...+-.....|+.++.+++.|+..|..
T Consensus 148 ~D~~~~--~~~~~~~~~-----l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 148 IDLAPA--NILQETLKD-----LKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccccCH--HHHHHHHHH-----HHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 998755 455555544 44444321111 001113345688888999999887764
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.3e-13 Score=107.26 Aligned_cols=158 Identities=20% Similarity=0.231 Sum_probs=89.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... .. ....+...+.....+.. ++ ..+.++||+|... +....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~-----------~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEF-SE-STKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQER-----------FRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CC-CCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHhhH
Confidence 3799999999999999999986653 11 11111222222223333 33 3567899999543 22222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+.++|++++|+|.+++-+-... .++..+....... .+++++.||.|+... ..+.... ...+....
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~--~~v~~~~-------~~~~~~~~ 135 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNN--KVVDSNI-------AKSFCDSL 135 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccc--ccCCHHH-------HHHHHHHc
Confidence 3345678999999998733222221 2333333332222 378999999998744 2111110 11122222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ ..|+..+.++.++++.+...+
T Consensus 136 ~~~~~------evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 136 NIPFF------ETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 22222 567777889999888776654
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-12 Score=107.75 Aligned_cols=157 Identities=16% Similarity=0.144 Sum_probs=91.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|||..|+|||||++.|++... .. ....+...+.....+.. ++ ..+.|+||+|... +....
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~-~~-~~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~~-----------~~~~~ 78 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEF-CL-ESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQER-----------YRAIT 78 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CC-CCCCceeEEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHH
Confidence 6999999999999999999987653 11 11111112222222333 33 4678999999432 22223
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhH-HHHhccCCCchHHHHHHh
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQL 175 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l-~~~~~~~~~~~~~~~~~~ 175 (363)
...+...+++++|+|.++.-+-.. ..++..+....... .++++|.||+|+... ..+ .+. ...+...
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~--~~~~~~~--------~~~l~~~ 146 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLNHL--RSVAEED--------GQALAEK 146 (216)
T ss_pred HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcccc--cCCCHHH--------HHHHHHH
Confidence 334467899999999873333222 23444444443322 389999999997533 111 111 1122222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|+..+.++.++++.+...+
T Consensus 147 ~~~~~~------e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 147 EGLSFL------ETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 222222 567788889999988776554
|
|
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.9e-13 Score=108.60 Aligned_cols=113 Identities=23% Similarity=0.182 Sum_probs=70.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|+|..|+|||||++.+++... .. . ..|+...+....+ ....+.++||+|.... ..+. ..
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f-~~---~-~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~--------~~l~---~~ 63 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRF-KD---T-VSTVGGAFYLKQW-GPYNISIWDTAGREQF--------HGLG---SM 63 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC-CC---C-CCccceEEEEEEe-eEEEEEEEeCCCcccc--------hhhH---HH
Confidence 4799999999999999999986553 11 1 1232222222223 4557889999996542 1122 22
Q ss_pred cCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
.+..++++++|+|++++-+-... .++..+......+ .+++||.||+|+..
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~--~piIlVgNK~DL~~ 114 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANED--CLFAVVGNKLDLTE 114 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence 34678999999999844333332 2333333322222 38899999999865
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-12 Score=103.37 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=70.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+++|..|+|||||++.+++... .. ....+.........+.+ ++ ..+.++||+|.... ...+ .
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-------~~~~---~ 69 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PE-RTEATIGVDFRERTVEI-DGERIKVQLWDTAGQERF-------RKSM---V 69 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CC-ccccceeEEEEEEEEEE-CCeEEEEEEEeCCChHHH-------HHhh---H
Confidence 6899999999999999999986542 11 11111111122222333 33 46789999994321 1111 2
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
...+..+|++++|+|+++.-+-... .++..+..... ....|+++|.||+|+...
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~ 124 (170)
T cd04115 70 QHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQ 124 (170)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhh
Confidence 2334678999999999744333333 23333433321 122389999999997643
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-12 Score=107.26 Aligned_cols=158 Identities=20% Similarity=0.242 Sum_probs=88.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCce-eeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+|+|+|..|+|||||++.+++... ... ...|+ ......+.+ .+ ..+.++||+|.... ..+ .
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~-~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~--------~~~---~ 64 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF-EPK---YRRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSF--------PAM---R 64 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-Ccc---CCCchhhheeEEEEE-CCEEEEEEEEECCCchhh--------hHH---H
Confidence 589999999999999999986543 111 11111 111222233 33 46789999996542 111 1
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH-h
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ-L 175 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~-~ 175 (363)
...+..+|++++|+|+++..+-... .++..+..... ....|+++|+||+|.....+....... . .... .
T Consensus 65 ~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~~v~~~~~-------~-~~~~~~ 135 (198)
T cd04147 65 KLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEEERQVPAKDA-------L-STVELD 135 (198)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEccccccccccccHHHH-------H-HHHHhh
Confidence 2234578999999998733222222 22233333322 122489999999998653111101000 1 1111 1
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.+..++ ..|+..+.++.++++.+...+.
T Consensus 136 ~~~~~~------~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 136 WNCGFV------ETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred cCCcEE------EecCCCCCCHHHHHHHHHHHhh
Confidence 111222 4678888999999998877553
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-12 Score=105.89 Aligned_cols=158 Identities=22% Similarity=0.173 Sum_probs=88.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
..+|+|+|.+|+|||||++.+++... .. ....|.... ...+.. ++ ..+.++||+|..+.. .+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~l-- 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF-ID---EYDPTIEDSYRKQCVI-DEETCLLDILDTAGQEEYS--------AM-- 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-Cc---CcCCchhhEEEEEEEE-CCEEEEEEEEeCCCCccch--------hh--
Confidence 47999999999999999999986543 11 111121111 122223 33 356789999976521 11
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+...+++++|+|+++.-+-.. ..++..+...... ...|+++|.||+|+... ..+.... ...+..
T Consensus 70 -~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~--~~i~~~~-------~~~~~~ 138 (189)
T PTZ00369 70 -RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSE--RQVSTGE-------GQELAK 138 (189)
T ss_pred -HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--cccCHHH-------HHHHHH
Confidence 2223457899999999873333222 2233334333221 12389999999997533 1111000 111222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+..++ ..|+..+.++.+++..+.+.+
T Consensus 139 ~~~~~~~------e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 139 SFGIPFL------ETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred HhCCEEE------EeeCCCCCCHHHHHHHHHHHH
Confidence 2222222 567788889999888776544
|
|
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-12 Score=106.48 Aligned_cols=161 Identities=15% Similarity=0.123 Sum_probs=90.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... .. ....++..+.....+...++ ..+.++||+|... +....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~-~~-~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRF-AE-VSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CC-CCCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHHH
Confidence 6899999999999999999996653 11 11111111222222222222 4678999999532 11222
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...|++++|+|+++.-+-.+ ..++..+...... ...++++|.||.|+.... ....+. ...+....
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~~-~v~~~~--------~~~~~~~~ 139 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQR-QVTREE--------AEKLAKDL 139 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEcccccccc-ccCHHH--------HHHHHHHh
Confidence 233467899999999873322222 2233334333221 112578889999986431 111111 12233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+..++ ..|+..+.++.++++.|.+.+.
T Consensus 140 ~~~~~------e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 140 GMKYI------ETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 32222 5677888999999998876543
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=103.73 Aligned_cols=161 Identities=17% Similarity=0.093 Sum_probs=87.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee-eEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.|++... ......+.. ......... ....+.++||||..... .+ .
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~--------~~---~ 65 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF----PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD--------RL---R 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccc--------cc---c
Confidence 4899999999999999999997653 111111111 111122221 13467899999976421 11 1
Q ss_pred hccCCCccEEEEEeecCCCCCHH--HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc---cCC-CchHHH
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQE--EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG---HEC-PKPLKE 171 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~---~~~-~~~~~~ 171 (363)
.......|++++|+|.++..+-. ...++..+..... ..|+++|.||+|+... ......+. ... ......
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~v~~~~~~~ 140 (171)
T cd00157 66 PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD--ENTLKKLEKGKEPITPEEGEK 140 (171)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc--hhhhhhcccCCCccCHHHHHH
Confidence 12335789999999987322221 1223333333322 2489999999998755 22111000 000 000122
Q ss_pred HHHhcCCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
+....+...+ ...|+..+.++.++++.+.
T Consensus 141 ~~~~~~~~~~-----~~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 141 LAKEIGAIGY-----MECSALTQEGVKEVFEEAI 169 (171)
T ss_pred HHHHhCCeEE-----EEeecCCCCCHHHHHHHHh
Confidence 2233232122 2567778889999988764
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-13 Score=113.98 Aligned_cols=115 Identities=21% Similarity=0.269 Sum_probs=78.7
Q ss_pred EEEEEcCCCCchHHHHHHhh---ccccccc-------------ccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC
Q 017924 21 TVVLLGRTGNGKSATGNSIL---GRKAFKA-------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~---g~~~~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (363)
+|+|+|+.|+|||||+++|+ |.....+ .....+.|+......+.+ ++..++++||||..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df-- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDF-- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHH--
Confidence 58999999999999999996 3211000 111234555666666777 7889999999997652
Q ss_pred ChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+. ..+...+|++++|+|+.......+...++.+... + .|+++++||+|....
T Consensus 78 -----~~~~----~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~----~p~ivviNK~D~~~a 131 (270)
T cd01886 78 -----TIEV----ERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-N----VPRIAFVNKMDRTGA 131 (270)
T ss_pred -----HHHH----HHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 1222 2333467999999999766766666666655432 2 289999999998754
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=103.39 Aligned_cols=159 Identities=17% Similarity=0.069 Sum_probs=88.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+++|..|+|||||++.+++... .... ..+.........+.. ++ ..+.++||+|... +..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~ 69 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKF-DTQL-FHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQER-----------FRS 69 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCC-CcCc-CCceeeEEEEEEEEE-CCeEEEEEEEeCCChHH-----------HHH
Confidence 347999999999999999999986543 1111 111111111222333 33 3567899999432 222
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.....+...|++++++++++.-+-... .++..+...... ....|+++|.||+|+... ....+. +..+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~~ 139 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER--QVSTEE--------AQAW 139 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc--ccCHHH--------HHHH
Confidence 233345678999999998733322222 233333332211 112389999999998632 111111 2223
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
....+...+ ...|+..+.++.++++.+-
T Consensus 140 ~~~~~~~~~-----~e~Sa~~~~~v~~~~~~~~ 167 (170)
T cd04116 140 CRENGDYPY-----FETSAKDATNVAAAFEEAV 167 (170)
T ss_pred HHHCCCCeE-----EEEECCCCCCHHHHHHHHH
Confidence 333332222 2567778888888887654
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=104.35 Aligned_cols=160 Identities=19% Similarity=0.151 Sum_probs=89.8
Q ss_pred EEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
|+|+|..|+|||||++.+++... .. ....+....+ ..... ++. .+.++||+|..... ....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~~---~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~~ 64 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PE---DYVPTVFENYSADVEV-DGKPVELGLWDTAGQEDYD-----------RLRP 64 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-CC---CCCCcEEeeeeEEEEE-CCEEEEEEEEECCCCcccc-----------hhch
Confidence 68999999999999999987543 21 1111222221 12222 333 57899999965421 1122
Q ss_pred ccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccC----CCchHHHH
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLKEI 172 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~----~~~~~~~~ 172 (363)
..+...|++++|+|+++.-+-... .++..+..... ..|+++|.||+|+.... ...+.+.... ..+....+
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~ 140 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEAL 140 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHH
Confidence 245678999999999733222222 23444444322 23999999999986531 1121111100 00112223
Q ss_pred HHhcCC-ceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 173 LQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 173 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
....+. .++ ..|++.+.++.++++.+...
T Consensus 141 ~~~~~~~~~~------e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 141 AKRIGAVKYL------ECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred HHHcCCcEEE------EecCCCCCCHHHHHHHHHHH
Confidence 333332 222 56788889999999877654
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=105.55 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=71.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc-ccccccc-------------CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR-KAFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~-~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (363)
.+|+|+|..|+|||||++.|++. ..|.... ...+.+.......+.+ .+..+.++||||..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH----
Confidence 58999999999999999999853 2221110 0012233333333444 577889999999654
Q ss_pred hHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
+......++.++|++++|+|+++.........+..+.. .. .++++|+||+|+...
T Consensus 78 -------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~~--~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 78 -------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---LG--LKPIVVINKIDRPDA 132 (194)
T ss_pred -------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---cC--CCEEEEEECCCCCCC
Confidence 22222233457899999999874433333333333221 12 389999999998643
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.1e-13 Score=124.94 Aligned_cols=164 Identities=14% Similarity=0.174 Sum_probs=99.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee---CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK---DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|+.|+|||||+++|++..... ...++.|.....+.+.+. .+..++|+||||... +.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~--~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-----------F~ 309 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQ--KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-----------FS 309 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCcc--ccCCccccccceEEEEEEecCCceEEEEEECCcHHH-----------HH
Confidence 34699999999999999999998654311 112334443333333332 247899999999532 33
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.....++..+|++++|+++++.........+..+.. . . .|+++++||+|........+...+.. +..+..
T Consensus 310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~-~--~--iPiIVViNKiDl~~~~~e~v~~eL~~-----~~ll~e 379 (742)
T CHL00189 310 SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA-A--N--VPIIVAINKIDKANANTERIKQQLAK-----YNLIPE 379 (742)
T ss_pred HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh-c--C--ceEEEEEECCCccccCHHHHHHHHHH-----hccchH
Confidence 333334457899999999875665555555555432 1 2 28999999999875411122222221 100111
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+... .....|+..+.++.+|++.+....
T Consensus 380 ~~g~~v----pvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 380 KWGGDT----PMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred hhCCCc----eEEEEECCCCCCHHHHHHhhhhhh
Confidence 122111 123578888999999999876643
|
|
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-12 Score=102.00 Aligned_cols=152 Identities=14% Similarity=0.167 Sum_probs=87.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE--eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
+|+|+|.+|+|||||++.+++... .. ....|.... ...+.. ++ ..+.++||+|... +...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~-~~---~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~-----------~~~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEF-HS---SHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQER-----------YQTI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CC---CCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHh-----------HHhh
Confidence 799999999999999998886543 11 111222222 222333 33 3567999999543 1112
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhH-HHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l-~~~~~~~~~~~~~~~~~ 174 (363)
....+..+|++++|+|++++-+-.+ ..++..+....... .++++|.||.|+... ..+ .+. ...+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~--~~v~~~~--------~~~~~~ 133 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEG--VQKILIGNKADEEQK--RQVGDEQ--------GNKLAK 133 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCCCHHH--------HHHHHH
Confidence 2234467899999999874333222 22333333332222 388999999998643 111 111 112222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
..+..+ ..+|+..+.++.+++..|.+
T Consensus 134 ~~~~~~------~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 134 EYGMDF------FETSACTNSNIKESFTRLTE 159 (161)
T ss_pred HcCCEE------EEEeCCCCCCHHHHHHHHHh
Confidence 223222 26677888899999887754
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=102.77 Aligned_cols=158 Identities=16% Similarity=0.088 Sum_probs=87.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|+|||||+|.+++... . .....+.+.......+... ....+.++|++|... +.....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKF-N-EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER-----------YHALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-C-CCcCCccceeEEEEEEEECCEEEEEEEEECCchHH-----------HHHhhH
Confidence 3799999999999999999996653 1 1111111111111222221 123678999999432 111122
Q ss_pred ccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+..+|++++|+|.++.-+.... .++..+...... ..++++++||+|......... +. ...+....+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~~~~~~-~~--------~~~~~~~~~ 136 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQRVVSK-SE--------AEEYAKSVG 136 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccCCCH-HH--------HHHHHHHcC
Confidence 233578999999998733222222 223334333332 238999999999874310111 11 222233223
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
..++ ..|+..+.++.++++.+...
T Consensus 137 ~~~~------~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 137 AKHF------ETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred CEEE------EEeCCCCCCHHHHHHHHHHH
Confidence 3332 45677788999998887553
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-12 Score=106.85 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=89.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|||..|+|||||++.|++... ... ..+.........+.+.+ ...+.|+||||.... .....
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~--~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----------~~~~~ 80 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSV--EDL-APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF-----------RTLTS 80 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC--CCc-CCCceeEEEEEEEEECCEEEEEEEEECCCchhh-----------HHHHH
Confidence 7999999999999999999987653 111 11112222222333311 246789999996542 11122
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHH--HHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEET--AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
..+..+|++++|+|.++.-+-.... +...+. .+......++++|.||+|+........++ ........
T Consensus 81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~-~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~---------~~~~~~~~ 150 (211)
T PLN03118 81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVE-LYSTNQDCVKMLVGNKVDRESERDVSREE---------GMALAKEH 150 (211)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH-HhcCCCCCCEEEEEECccccccCccCHHH---------HHHHHHHc
Confidence 2345789999999987332222221 112222 22111223788999999986431011111 11122222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+..+ ...|++.+.++.++++.|...+.
T Consensus 151 ~~~~------~e~SAk~~~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 151 GCLF------LECSAKTRENVEQCFEELALKIM 177 (211)
T ss_pred CCEE------EEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222 25677788999999998877653
|
|
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-12 Score=102.26 Aligned_cols=163 Identities=16% Similarity=0.133 Sum_probs=94.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||++.+++.. |.. ....|+...+ ..+.. ++ ..+.++||+|... +.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~-f~~---~~~pT~~~~~~~~~~~-~~~~~~l~iwDtaG~e~-----------~~ 67 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDC-FPE---NYVPTVFENYTASFEI-DTQRIELSLWDTSGSPY-----------YD 67 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC-CCC---ccCCceeeeeEEEEEE-CCEEEEEEEEECCCchh-----------hH
Confidence 45799999999999999999988543 221 1112222221 12222 33 4678999999532 22
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc----CCCch
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECPKP 168 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~----~~~~~ 168 (363)
......+.++|++++|+|++++-+-.. ..++..+..... . .+++||.||.|+.... ..+...... -..+.
T Consensus 68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~~ 143 (182)
T cd04172 68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYDQ 143 (182)
T ss_pred hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHHH
Confidence 233345678999999999985544443 245555555433 2 3899999999975321 111110000 00111
Q ss_pred HHHHHHhcCC-ceEEecCCCcccccchhH-HHHHHHHHHH
Q 017924 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNS 206 (363)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~l~~~l~~ 206 (363)
...+....+. .|+ ++|++++.+ +.+++..+-.
T Consensus 144 ~~~~a~~~~~~~~~------E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 144 GANMAKQIGAATYI------ECSALQSENSVRDIFHVATL 177 (182)
T ss_pred HHHHHHHcCCCEEE------ECCcCCCCCCHHHHHHHHHH
Confidence 3334444443 233 578888887 9998886554
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.9e-13 Score=110.11 Aligned_cols=115 Identities=20% Similarity=0.239 Sum_probs=75.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccc---ccc-------------CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFK---ASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~---~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (363)
+|+|+|+.|+|||||+++|+...... +.. .....+.......+.+ ++..++++||||..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f-- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDF-- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccch--
Confidence 58999999999999999997542110 000 1122333344444555 7889999999998652
Q ss_pred ChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
...... +....|++++|+|+...........++.+... + .|+++++||+|....
T Consensus 78 -----~~~~~~----~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-~----~P~iivvNK~D~~~a 131 (237)
T cd04168 78 -----IAEVER----SLSVLDGAILVISAVEGVQAQTRILWRLLRKL-N----IPTIIFVNKIDRAGA 131 (237)
T ss_pred -----HHHHHH----HHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccccCC
Confidence 122222 33467999999998866666555566555432 3 288999999998754
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=103.11 Aligned_cols=161 Identities=14% Similarity=0.032 Sum_probs=88.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|.+|+|||||++.+++... .......+.........+.. ++ ..+.++|+.|..... .
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~-----------~ 69 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSF-SLNAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAI-----------L 69 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCC-CcccCCCccCcceEEEEEEE-CCeEEEEEEEecCCccccc-----------c
Confidence 447999999999999999999987653 20111111111122223333 33 356788998854321 1
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.....+.++|++++|+|+++.-+ ......++..... ....|+++|.||+|+... ... .... ..++...
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s--~~~~~~~~~~~~~-~~~~p~iiv~NK~Dl~~~--~~~--~~~~-----~~~~~~~ 137 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKS--FSYCAEVYKKYFM-LGEIPCLFVAAKADLDEQ--QQR--YEVQ-----PDEFCRK 137 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHH--HHHHHHHHHHhcc-CCCCeEEEEEEccccccc--ccc--cccC-----HHHHHHH
Confidence 11223467899999999873311 1111222222211 112489999999998543 110 0011 2222222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+.. .....|+..+.++.++++.+...+
T Consensus 138 ~~~~-----~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 138 LGLP-----PPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred cCCC-----CCEEEEeccCccHHHHHHHHHHHh
Confidence 2221 112457788889999988876654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-12 Score=117.08 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=79.8
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhccccccc--------------ccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
+.+..+|+++|+.++|||||+++|++...... ..-..+.|.......+.+ ++..++|+||||..+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChHH
Confidence 34568999999999999999999987522100 001133444443333333 567889999999432
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
+...+..+...+|++++|+|+...+...++..+..+... +.. .+++++||+|+...
T Consensus 88 -----------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~~---~iIvvvNK~D~~~~ 143 (409)
T CHL00071 88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GVP---NIVVFLNKEDQVDD 143 (409)
T ss_pred -----------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---EEEEEEEccCCCCH
Confidence 223333334578999999999866777777777665543 321 37788999999854
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.7e-12 Score=105.36 Aligned_cols=87 Identities=24% Similarity=0.280 Sum_probs=55.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|.+|+|||||+|.|+|...... ... ..|.......+.+ ++..+.++||||+............++ ...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~-~~~-~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVA-AYE-FTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQV----IAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc-CCC-CccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence 799999999999999999998764211 111 1233333333344 678889999999765321111112222 234
Q ss_pred CCCccEEEEEeecC
Q 017924 101 KDGIHAFLVVFSVT 114 (363)
Q Consensus 101 ~~~~~~~l~v~~~~ 114 (363)
+..+|++++|+|++
T Consensus 75 ~~~ad~il~V~D~t 88 (233)
T cd01896 75 ARTADLILMVLDAT 88 (233)
T ss_pred hccCCEEEEEecCC
Confidence 56789999999876
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-12 Score=101.75 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=91.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe--EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.+|+++|..|+|||||++.+++.. |... ...|+...+ ..+.. ++ ..+.++||.|... +..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~-f~~~---~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~ 64 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGE-FDED---YIQTLGVNFMEKTISI-RGTEITFSIWDLGGQRE-----------FIN 64 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCC---CCCccceEEEEEEEEE-CCEEEEEEEEeCCCchh-----------HHH
Confidence 379999999999999999987553 2221 112222222 22333 33 4578999998543 223
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcch-hhHHHHhccCCCchHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-KTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~-~~l~~~~~~~~~~~~~~~~ 173 (363)
....++.++|++++|+|++++-+-.+. .++..+....... .+ ++|.||+|+..... ...+..... ...+.
T Consensus 65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~~~~~~~~~~~~~~~-----~~~~a 136 (182)
T cd04128 65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLFADLPPEEQEEITKQ-----ARKYA 136 (182)
T ss_pred hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhccccccchhhhhhHHH-----HHHHH
Confidence 333456788999999999844343332 3444444432222 24 67899999853200 111111111 22233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+..++ ..|++.+.++.++++.+...+
T Consensus 137 ~~~~~~~~------e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 137 KAMKAPLI------FCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 33332222 568888999999999876654
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-12 Score=116.07 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=77.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc------ccc--------cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK------AFK--------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~------~~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
.+..+|+++|+.++|||||+++|++.. .+. ......+.|.+.....+.. ++..++|+||||..
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~-- 86 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHA-- 86 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHH--
Confidence 456899999999999999999998621 100 0011234455444333333 56788999999953
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccc-eEEEEeCCCCCCc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLED 152 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~i~v~n~~D~~~~ 152 (363)
.+...+......+|++++|+|+...........+..+.. .+. + +++++||+|+...
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~gi----~~iivvvNK~Dl~~~ 143 (396)
T PRK12735 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV----PYIVVFLNKCDMVDD 143 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEEEecCCcch
Confidence 233333344557899999999975566665555555443 332 5 4467999998743
|
|
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=4e-12 Score=105.02 Aligned_cols=166 Identities=12% Similarity=0.066 Sum_probs=95.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|||..|+|||||++.+++.. |... ...|+...+ ..+.. + ...+.|+||+|... +.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~-F~~~---y~pTi~~~~~~~i~~-~~~~v~l~iwDTaG~e~-----------~~ 75 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDC-YPET---YVPTVFENYTAGLET-EEQRVELSLWDTSGSPY-----------YD 75 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCC-CCCC---cCCceeeeeEEEEEE-CCEEEEEEEEeCCCchh-----------hH
Confidence 34799999999999999999988553 3221 112221111 12222 3 34678999999432 22
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc---C-CCch
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---E-CPKP 168 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~---~-~~~~ 168 (363)
......+.++|++++|+|++++-+-.. ..++..+..... . .+++||.||.|+.... ..+.+.... . ..+.
T Consensus 76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~~~~-~~~~~l~~~~~~~Vs~~e 151 (232)
T cd04174 76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-S--TRILLIGCKTDLRTDL-STLMELSNQKQAPISYEQ 151 (232)
T ss_pred HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccccccc-chhhhhccccCCcCCHHH
Confidence 223345678999999999984444332 345555655433 2 2899999999975321 111110000 0 0011
Q ss_pred HHHHHHhcCCceEEecCCCcccccchh-HHHHHHHHHHHHH
Q 017924 169 LKEILQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVI 208 (363)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~ 208 (363)
...+....+...++ .+|++.+. ++++++..+...+
T Consensus 152 ~~~~a~~~~~~~~~-----EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 152 GCALAKQLGAEVYL-----ECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred HHHHHHHcCCCEEE-----EccCCcCCcCHHHHHHHHHHHH
Confidence 33344444432222 56888886 7999988766554
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=102.20 Aligned_cols=154 Identities=21% Similarity=0.177 Sum_probs=86.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee-EeEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+|+|+|+.|+|||||++.+++... .... ..++.. ....+.. + ...+.++|+||... +....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~---~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 64 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEY---DPTIEDSYRKTIVV-DGETYTLDILDTAGQEE-----------FSAMR 64 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCc---CCChhHeEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 589999999999999999987652 2211 122222 1222222 3 24678999999543 11112
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.......+++++|++.++.-+..+ ..++..+..... ....|++++.||+|.........+ . ...+....
T Consensus 65 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~-~--------~~~~~~~~ 134 (160)
T cd00876 65 DLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLENERQVSKE-E--------GKALAKEW 134 (160)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccccceecHH-H--------HHHHHHHc
Confidence 223346799999999873322222 223333333332 122489999999998753101111 1 22222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
+..+ ...|+..+.++.++++.|..
T Consensus 135 ~~~~------~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 135 GCPF------IETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred CCcE------EEeccCCCCCHHHHHHHHHh
Confidence 2222 25567778899998887654
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-12 Score=102.48 Aligned_cols=164 Identities=20% Similarity=0.182 Sum_probs=94.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||+..++... |... ...|+...+ ..+.. ++ ..+.++||+|.... ...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-f~~~---~~~Ti~~~~~~~~~~-~~~~v~l~i~Dt~G~~~~-----------~~~ 65 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FPTD---YIPTVFDNFSANVSV-DGNTVNLGLWDTAGQEDY-----------NRL 65 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-CCCC---CCCcceeeeEEEEEE-CCEEEEEEEEECCCCccc-----------ccc
Confidence 489999999999999999998543 3221 112222111 12222 33 46789999996542 222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHh--ccCCCchHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL--GHECPKPLKEI 172 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~--~~~~~~~~~~~ 172 (363)
....+.+++++++|+|.+++-+-... .++..+..... + .+++||.||+|+.... ....... .....+....+
T Consensus 66 ~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~~~~-~~~~~~~~~~~v~~~~~~~~ 141 (176)
T cd04133 66 RPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP-N--VPIVLVGTKLDLRDDK-QYLADHPGASPITTAQGEEL 141 (176)
T ss_pred chhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeChhhccCh-hhhhhccCCCCCCHHHHHHH
Confidence 22345688999999999855554442 45555554432 3 3899999999985430 0000000 00000112233
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+...+. ++|++.+.++++++..+.+.+
T Consensus 142 a~~~~~~~~~-----E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 142 RKQIGAAAYI-----ECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHHcCCCEEE-----ECCCCcccCHHHHHHHHHHHH
Confidence 3333322122 678888999999998877654
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-12 Score=101.43 Aligned_cols=162 Identities=17% Similarity=0.100 Sum_probs=89.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||+..+++.. |.. ....|+...+ ..+.. ++ ..+.++||+|.... ...
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~-f~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA-FPG---EYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDY-----------DRL 65 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCC---cCCCcceeeeEEEEEE-CCEEEEEEEEECCCchhh-----------hhh
Confidence 589999999999999999888543 221 1111221111 12222 33 46779999995431 122
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccC----CCchHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLK 170 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~----~~~~~~ 170 (363)
....+.+.|++++|+|.+++-+-... .++..+..... . .|+++|.||.|+... ....+...... ..+...
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilvgnK~Dl~~~-~~~~~~~~~~~~~~v~~~~~~ 141 (174)
T cd01871 66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD-KDTIEKLKEKKLTPITYPQGL 141 (174)
T ss_pred hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhccC-hhhHHHHhhccCCCCCHHHHH
Confidence 22345688999999999843332232 23444443322 2 389999999998532 11222111110 001122
Q ss_pred HHHHhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.+....+...+ ...|++++.++.++++.+..
T Consensus 142 ~~~~~~~~~~~-----~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 142 AMAKEIGAVKY-----LECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHHHHcCCcEE-----EEecccccCCHHHHHHHHHH
Confidence 23333332112 26788889999999887653
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-12 Score=108.02 Aligned_cols=163 Identities=18% Similarity=0.188 Sum_probs=100.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..|++||-++||||||+|+|+.... ...... .|....+..+.+.+...+++.|.||+......+.-++-.|.+.+.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp---kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP---KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC---cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH
Confidence 3689999999999999999996543 122333 344666666666455669999999997644444445566666654
Q ss_pred ccCCCccEEEEEeecCCCC--CH-HHHHHHHHHHHHhcc-ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 99 MAKDGIHAFLVVFSVTNRF--SQ-EEETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~--~~-~~~~~l~~~~~~~~~-~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
++..++||+|++... +. .+...|..-.+.+.+ -..++.+||.||+|..+. -+.+ +.++..
T Consensus 274 ----R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea----e~~~--------l~~L~~ 337 (366)
T KOG1489|consen 274 ----RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA----EKNL--------LSSLAK 337 (366)
T ss_pred ----hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH----HHHH--------HHHHHH
Confidence 568999999998331 22 122222111122222 233489999999998533 1111 223333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
..... ++...+++.+.++.+|++.+.+
T Consensus 338 ~lq~~-----~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 338 RLQNP-----HVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HcCCC-----cEEEeeeccccchHHHHHHHhh
Confidence 33322 2235677788888888887654
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=118.02 Aligned_cols=121 Identities=15% Similarity=0.189 Sum_probs=79.7
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcc------cc-cc-------cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCC
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGR------KA-FK-------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~------~~-~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 80 (363)
...+..+|+++|+.++|||||+++|++. .. +. ......+.|.+.....+.. ++..++|+||||+.
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~ 135 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHA 135 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCcc
Confidence 3456689999999999999999999743 10 00 0011144555554444444 56788999999975
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccc-eEEEEeCCCCCCc
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLED 152 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~i~v~n~~D~~~~ 152 (363)
+. ...+.. ....+|++++|+|+.......++..+..+... +. + +++++||+|+...
T Consensus 136 ~f-------~~~~~~----g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gi----p~iIvviNKiDlv~~ 192 (447)
T PLN03127 136 DY-------VKNMIT----GAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GV----PSLVVFLNKVDVVDD 192 (447)
T ss_pred ch-------HHHHHH----HHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC----CeEEEEEEeeccCCH
Confidence 41 122222 22358999999998756666676666665543 32 5 5788999999854
|
|
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-12 Score=100.87 Aligned_cols=157 Identities=21% Similarity=0.182 Sum_probs=86.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+++|.+|+|||||++.+++... .. ....++...+ ..... + ...+.++||||.... ..+.
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~-~~---~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~--------~~~~-- 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF-VE---DYEPTKADSYRKKVVL-DGEDVQLNILDTAGQEDY--------AAIR-- 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-cc---ccCCcchhhEEEEEEE-CCEEEEEEEEECCChhhh--------hHHH--
Confidence 3799999999999999999986543 11 1111111111 11222 3 246789999995442 1122
Q ss_pred HhccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.......+++++++++++.-+-. -..++..+..... ....|+++|.||+|..........+ ...+...
T Consensus 66 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~---------~~~~~~~ 134 (164)
T cd04139 66 -DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEE---------AANLARQ 134 (164)
T ss_pred -HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHH---------HHHHHHH
Confidence 22334668899999876222111 1223333333311 1224899999999987520011111 1122222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
++..+ ...|+.++.++.++++.+.+.+
T Consensus 135 ~~~~~------~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 135 WGVPY------VETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred hCCeE------EEeeCCCCCCHHHHHHHHHHHH
Confidence 23222 3567888899999998876544
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.3e-12 Score=100.85 Aligned_cols=162 Identities=15% Similarity=0.100 Sum_probs=92.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.+++.. |.. ....|+...+ ..+.. ++ ..+.++||+|... +...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~-f~~---~~~~t~~~~~~~~~~~-~~~~~~l~iwDt~G~~~-----------~~~~ 65 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC-YPE---TYVPTVFENYTASFEI-DEQRIELSLWDTSGSPY-----------YDNV 65 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CCC---CcCCceEEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhhc
Confidence 589999999999999999998654 221 1112222211 12223 33 4577999999532 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc----cCCCchHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG----HECPKPLK 170 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~----~~~~~~~~ 170 (363)
....+.++|++++|+|++++-+-.. ..++..+..... . .++++|.||.|+.... ..+...-. .-..+...
T Consensus 66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~--~~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~ 141 (178)
T cd04131 66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-N--TKVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGC 141 (178)
T ss_pred chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-C--CCEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHH
Confidence 3345678899999999985544443 245555555443 2 3899999999975321 11110000 00011123
Q ss_pred HHHHhcCCceEEecCCCcccccchhH-HHHHHHHHHH
Q 017924 171 EILQLCDNRCVLFDNKTKDEAKGTEQ-VRQLLSLVNS 206 (363)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~ 206 (363)
++....+...++ .+|++++.+ +.+++..+-+
T Consensus 142 ~~a~~~~~~~~~-----E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 142 AIAKQLGAEIYL-----ECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred HHHHHhCCCEEE-----ECccCcCCcCHHHHHHHHHH
Confidence 344443332222 567888875 8888876655
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.2e-12 Score=101.88 Aligned_cols=164 Identities=17% Similarity=0.138 Sum_probs=92.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.++... |.. ....|....+. .+.. ++ ..+.++||+|... +...
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~-f~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~l 67 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNA-FPK---EYIPTVFDNYSAQTAV-DGRTVSLNLWDTAGQEE-----------YDRL 67 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-CCc---CCCCceEeeeEEEEEE-CCEEEEEEEEECCCchh-----------hhhh
Confidence 699999999999999999987543 221 11223222111 1222 33 4678999999543 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccC----CCchHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLK 170 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~----~~~~~~ 170 (363)
....+.++|++++|+|++++-+-... .++..+.... .. .|++||.||.|+.... ...+...... ..+...
T Consensus 68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~~--~piilvgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~~ 143 (191)
T cd01875 68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PN--VPILLVGTKKDLRNDA-DTLKKLKEQGQAPITPQQGG 143 (191)
T ss_pred hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEEeChhhhcCh-hhHHHHhhccCCCCCHHHHH
Confidence 33445688999999999844333332 1333333322 22 3899999999985431 1111111100 001122
Q ss_pred HHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+....+...+ ..+|++.+.++++++..+.+.+
T Consensus 144 ~~a~~~~~~~~-----~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 144 ALAKQIHAVKY-----LECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred HHHHHcCCcEE-----EEeCCCCCCCHHHHHHHHHHHH
Confidence 23333332112 2567888899999998877655
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-12 Score=101.85 Aligned_cols=162 Identities=17% Similarity=0.138 Sum_probs=88.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|||||||++.+++... .. ....|.... ...+.+ ++ ..+.++||+|.... ...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-PE---VYVPTVFENYVADIEV-DGKQVELALWDTAGQEDY-----------DRL 65 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-CC---CCCCccccceEEEEEE-CCEEEEEEEEeCCCchhh-----------hhc
Confidence 5899999999999999999986542 11 111122111 122233 33 35789999996432 111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccC----C-CchH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----C-PKPL 169 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~----~-~~~~ 169 (363)
....+.+.|+++++++++++-+-... .++..+..... . .|+++|.||+|+... ......+... . ....
T Consensus 66 ~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~i~~~~~~~v~~~~~ 140 (175)
T cd01870 66 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEG 140 (175)
T ss_pred cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhcccC--hhhhhhhhhccCCCccHHHH
Confidence 22344678999999998733221121 23333333222 2 389999999997643 2221111110 0 0011
Q ss_pred HHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
..+...++...+ ..+|+..+.++.++++.+...
T Consensus 141 ~~~~~~~~~~~~-----~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 141 RDMANKIGAFGY-----MECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHcCCcEE-----EEeccccCcCHHHHHHHHHHH
Confidence 222222222112 256888889999999887643
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-12 Score=106.15 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=86.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|.+|+|||||++.|++... .. ....++..+.....+.+ ++ ..+.++||+|... +....
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~-~~-~~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~-----------~~~~~ 72 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRF-QP-VHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQES-----------FRSIT 72 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CC-CCCCCccceEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHHH
Confidence 6999999999999999999986643 11 11111111111122233 33 3577999999432 11112
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++|+|.++.-+-... .++..+...... ..++++|.||+|+........+ . ...+....
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~~~~~~~-~--------~~~~~~~~ 141 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHRRAVSTE-E--------GEQFAKEH 141 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccccCCCHH-H--------HHHHHHHc
Confidence 2233568999999998733222222 233333333322 2389999999998643101111 1 11222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
+..++ ..|+..+.++.+++..+...
T Consensus 142 ~~~~~------e~Sa~~~~~v~e~f~~l~~~ 166 (210)
T PLN03108 142 GLIFM------EASAKTAQNVEEAFIKTAAK 166 (210)
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHH
Confidence 22222 55677788899887665443
|
|
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-12 Score=106.42 Aligned_cols=161 Identities=21% Similarity=0.117 Sum_probs=88.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|+|||||++.+++.... ......+...+.....+.+. ....+.++||+|... .+...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~----------~~~~~-- 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM----------WTEDS-- 67 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch----------HHHhH--
Confidence 37999999999999999999754321 01111111101112222221 235678999999651 11111
Q ss_pred ccCC-CccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 99 MAKD-GIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 99 ~~~~-~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.+. ++|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+........+ . ...+....
T Consensus 68 -~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~~~v~~~-~--------~~~~a~~~ 136 (221)
T cd04148 68 -CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARSREVSVQ-E--------GRACAVVF 136 (221)
T ss_pred -HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhccccceecHH-H--------HHHHHHHc
Confidence 122 7899999999983322221 223333333211 112389999999998644101111 1 11222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+..++ ..|+..+.++.++++.+...+..
T Consensus 137 ~~~~~------e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 137 DCKFI------ETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred CCeEE------EecCCCCCCHHHHHHHHHHHHHh
Confidence 32222 56788889999999988776643
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-12 Score=100.16 Aligned_cols=154 Identities=19% Similarity=0.186 Sum_probs=83.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.|++.. +..... .+.+.......+.. ++ ..+.++|+||..... .+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~--------~~~~~- 69 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYK-PGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYR--------AIRRL- 69 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCC-CCceeeeeEEEEEE-CCEEEEEEEEECCCcccch--------HHHHH-
Confidence 689999999999999999999876 332222 22232332222334 55 677899999954421 11111
Q ss_pred hccCCCccEEEEEeecCCC---CCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 98 GMAKDGIHAFLVVFSVTNR---FSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.....+.+++++|.... +.......+..+...... ..|+++++||+|.... .... . ....+.
T Consensus 70 --~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~--~~~~-~--------~~~~~~ 134 (161)
T TIGR00231 70 --YYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA--KLKT-H--------VAFLFA 134 (161)
T ss_pred --HHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc--hhhH-H--------HHHHHh
Confidence 11234555555554412 111222333333333321 2389999999999765 2111 1 222222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
..+... ....++..+.++.++++.|.
T Consensus 135 ~~~~~~-----~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 135 KLNGEP-----IIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred hccCCc-----eEEeecCCCCCHHHHHHHhh
Confidence 222211 23567777888888887754
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.2e-12 Score=100.13 Aligned_cols=163 Identities=18% Similarity=0.142 Sum_probs=89.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.+++... . .....+....+ ..+.. ++ ..+.++||+|..... ..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~-~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~ 64 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF-P---EEYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYD-----------RL 64 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-C---CCCCCceeeeeEEEEEE-CCEEEEEEEEeCCCccccc-----------cc
Confidence 3799999999999999999986543 1 11112222111 12223 33 346789999965421 11
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHh---ccCCC-chHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL---GHECP-KPLK 170 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~---~~~~~-~~~~ 170 (363)
....+...|++++|++.+++-+-... .++..+... ... .|+++|.||+|+.... ....... ..... ....
T Consensus 65 ~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~--~piivv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~ 140 (174)
T cd04135 65 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APN--VPYLLVGTQIDLRDDP-KTLARLNDMKEKPVTVEQGQ 140 (174)
T ss_pred ccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCC--CCEEEEeEchhhhcCh-hhHHHHhhccCCCCCHHHHH
Confidence 12345678999999998733332222 234444433 222 3899999999976431 1111110 00000 0112
Q ss_pred HHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.+....+...++ ..|+.++.+++++++.+-..
T Consensus 141 ~~~~~~~~~~~~-----e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 141 KLAKEIGAHCYV-----ECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHHHHcCCCEEE-----EecCCcCCCHHHHHHHHHHH
Confidence 233333322222 56888899999998876543
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-12 Score=115.08 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=79.5
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccc--------------cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
+.+..+|+++|+.++|||||+++|++...-. ......+.|.+.....+.. ++..++++||||..
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~- 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHA- 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHH-
Confidence 4556899999999999999999998632100 0011234455444333333 56788999999943
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.+...+......+|++++|+|+...........+..+... +.. .+++++||+|+...
T Consensus 87 ----------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~~---~~IvviNK~D~~~~ 143 (394)
T PRK12736 87 ----------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GVP---YLVVFLNKVDLVDD 143 (394)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CCC---EEEEEEEecCCcch
Confidence 2223333344578999999999766666666666665543 321 36788999998743
|
|
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=103.09 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=85.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce-eeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|.+|+|||||++.+++... ... ...|. ......... ++ ..+.++||+|..... .+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~-~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~~~-- 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTF-IEK---YDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA--------SMR-- 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCC---CCCchhheEEEEEEE-CCEEEEEEEEECCCccccc--------chH--
Confidence 6899999999999999988885543 111 11121 111222333 33 356789999964421 111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...+.+.|++++|+|.++.-+-.+ ..++..+..... ....|+++|.||+|+... ....... ...+...
T Consensus 67 -~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~--~~~~~~~-------~~~~~~~ 135 (163)
T cd04176 67 -DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE--REVSSAE-------GRALAEE 135 (163)
T ss_pred -HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc--CccCHHH-------HHHHHHH
Confidence 122346899999999873332222 223334443321 122389999999997543 1111000 1112222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.+..+ ...|++.+.++.+++..+..
T Consensus 136 ~~~~~------~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 136 WGCPF------METSAKSKTMVNELFAEIVR 160 (163)
T ss_pred hCCEE------EEecCCCCCCHHHHHHHHHH
Confidence 22222 25677788899999887654
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-12 Score=102.70 Aligned_cols=160 Identities=19% Similarity=0.208 Sum_probs=88.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... .... .+.+.......... . ...+.++||||... +....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~~~~--~~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-VESY--YPTIENTFSKIIRY-KGQDYHLEIVDTAGQDE-----------YSILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-cccc--CcchhhhEEEEEEE-CCEEEEEEEEECCChHh-----------hHHHH
Confidence 5899999999999999999986543 1111 11111111222222 3 24567999999543 11122
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.......++++++++.++.-+-.. ...+..+....+ ....++++|.||+|.... ..+... . ...+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~--~~~~~~--~-----~~~~~~~~ 136 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHTQ--RQVSTE--E-----GKELAESW 136 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhhc--CccCHH--H-----HHHHHHHc
Confidence 223346789999999873322222 222233333222 122389999999998643 111100 0 11222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+..+ ...|+..+.++.+++..+.+.+..
T Consensus 137 ~~~~------~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 137 GAAF------LESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred CCeE------EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3222 245777888999999888776644
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.9e-12 Score=102.77 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=89.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|||..|+|||||++.+++.. |... ...|+...+ ..+.. ++ ..+.+|||+|... +...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~-f~~~---y~pTi~~~~~~~~~~-~~~~v~L~iwDt~G~e~-----------~~~l 65 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA-YPGS---YVPTVFENYTASFEI-DKRRIELNMWDTSGSSY-----------YDNV 65 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCCc---cCCccccceEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 589999999999999999998654 2211 111221111 12223 33 4577899999532 2233
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccC----CCchHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLK 170 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~----~~~~~~ 170 (363)
...++...|++++|+|+++.-+-... .+...+...+ .. .|++||.||.|+.... ..+....... ..+...
T Consensus 66 ~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~--~piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~ 141 (222)
T cd04173 66 RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PN--AKVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGT 141 (222)
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEEECcccccch-hhhhhhhhccCCccCHHHHH
Confidence 33456789999999999844332222 2222232222 22 3899999999986431 1111110000 001122
Q ss_pred HHHHhcCCceEEecCCCcccccchhH-HHHHHHHHHHH
Q 017924 171 EILQLCDNRCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV 207 (363)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~ 207 (363)
.+....+...++ ++|+..+.+ +++++......
T Consensus 142 ~~ak~~~~~~y~-----E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 142 VLAKQVGAVSYV-----ECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred HHHHHcCCCEEE-----EcCCCcCCcCHHHHHHHHHHH
Confidence 334444432222 567776664 88888765553
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-12 Score=93.75 Aligned_cols=159 Identities=19% Similarity=0.216 Sum_probs=101.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
+.+.+|.|+|.+||||||+++.|.|... .....|...++....+ ++..++++|.-|. +.++.+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq-----------~~lr~~ 76 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGGQ-----------KTLRSY 76 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCCc-----------chhHHH
Confidence 4568999999999999999999998874 2223344556666666 7889999999983 456777
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccc--cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
+..++...|++++|+|.+++..-.+ ....+..++..+ +..+++++.||.|.... -..++.... -.+..+..
T Consensus 77 W~nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~~~i~~~---~~L~~l~k 149 (185)
T KOG0073|consen 77 WKNYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLPGA--LSLEEISKA---LDLEELAK 149 (185)
T ss_pred HHHhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCHHHHHHh---hCHHHhcc
Confidence 7778888999999999864443222 222233332211 12389999999998754 333332211 01455555
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
.++.+.+- .++.++.++.+-++++-
T Consensus 150 s~~~~l~~------cs~~tge~l~~gidWL~ 174 (185)
T KOG0073|consen 150 SHHWRLVK------CSAVTGEDLLEGIDWLC 174 (185)
T ss_pred ccCceEEE------EeccccccHHHHHHHHH
Confidence 55555443 34445555555555443
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=119.52 Aligned_cols=168 Identities=11% Similarity=0.076 Sum_probs=98.2
Q ss_pred CccCCCCCCccEEEEEcCCCCchHHHHHHhhccccccc--------------cc-----------------CCCCCceee
Q 017924 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SA-----------------GSSGVTKTC 58 (363)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~--------------~~-----------------~~~~~t~~~ 58 (363)
|...+...+..+|+|+|+.++|||||++.|+....... +. ...+.|++.
T Consensus 18 ~~~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~ 97 (474)
T PRK05124 18 YLHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDV 97 (474)
T ss_pred HHhhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEe
Confidence 44555556778999999999999999999874431100 00 013345555
Q ss_pred EeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcccccc
Q 017924 59 EMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138 (363)
Q Consensus 59 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 138 (363)
....+.+ ++..++|+||||..+ +...+......+|++++|+|+...........+..+.. ++. .
T Consensus 98 ~~~~~~~-~~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~ 161 (474)
T PRK05124 98 AYRYFST-EKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---K 161 (474)
T ss_pred eEEEecc-CCcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---C
Confidence 5555555 677899999999432 22222223357899999999875554444444333332 332 2
Q ss_pred ceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHH
Q 017924 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQL 200 (363)
Q Consensus 139 ~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 200 (363)
++++++||+|....+...++..... +..++..++. .........|+..+.++..+
T Consensus 162 ~iIvvvNKiD~~~~~~~~~~~i~~~-----l~~~~~~~~~--~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 162 HLVVAVNKMDLVDYSEEVFERIRED-----YLTFAEQLPG--NLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ceEEEEEeeccccchhHHHHHHHHH-----HHHHHHhcCC--CCCceEEEEEeecCCCcccc
Confidence 7889999999875422344444444 4444443321 00111234566666666543
|
|
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-12 Score=106.98 Aligned_cols=159 Identities=20% Similarity=0.215 Sum_probs=89.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee-eEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.+++... .. ....|+. .....+.. ++ ..+.|+||+|.... ..+..
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f-~~---~y~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~--------~~~~~- 66 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF-EE---QYTPTIEDFHRKLYSI-RGEVYQLDILDTSGNHPF--------PAMRR- 66 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCC-CC---CCCCChhHhEEEEEEE-CCEEEEEEEEECCCChhh--------hHHHH-
Confidence 3799999999999999999985432 21 1112221 11222233 33 46789999996542 11221
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhc-------cccccceEEEEeCCCCCCcchhhHHHHhccCCCch
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-------KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP 168 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~-------~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~ 168 (363)
..+...|++++|+|+++.-+-.+ ..++..+..... .....|+++|.||+|+........++
T Consensus 67 --~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~e--------- 135 (247)
T cd04143 67 --LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE--------- 135 (247)
T ss_pred --HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHH---------
Confidence 23346799999999984333222 223334433210 11224899999999986421011111
Q ss_pred HHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++.......+ ...|+..+.+++++++.|..+.
T Consensus 136 i~~~~~~~~~~~~-----~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 136 VEQLVGGDENCAY-----FEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHHHHHhcCCCEE-----EEEeCCCCCCHHHHHHHHHHHh
Confidence 2222221111111 2567888899999999887755
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.8e-12 Score=101.12 Aligned_cols=156 Identities=22% Similarity=0.191 Sum_probs=86.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|.+|||||||++.+++... .... ..|+... .....+ ++ ..+.++||+|..... .+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~-~~~~---~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~--------~~~-- 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF-IESY---DPTIEDSYRKQVEI-DGRQCDLEILDTAGTEQFT--------AMR-- 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-Cccc---CCcchheEEEEEEE-CCEEEEEEEEeCCCcccch--------hhh--
Confidence 5899999999999999999985543 2111 1122111 122223 32 466799999965421 111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...+...+++++|++.++.-+-.. ..+...+..... ....|++++.||.|.........++ ...+...
T Consensus 67 -~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~---------~~~~~~~ 135 (168)
T cd04177 67 -ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDDRQVSRED---------GVSLSQQ 135 (168)
T ss_pred -HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhccccCccCHHH---------HHHHHHH
Confidence 222346789999999873322222 223333433322 1124899999999986431011111 1112222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.+...+ ...|++.+.++.++++.+..
T Consensus 136 ~~~~~~-----~~~SA~~~~~i~~~f~~i~~ 161 (168)
T cd04177 136 WGNVPF-----YETSARKRTNVDEVFIDLVR 161 (168)
T ss_pred cCCceE-----EEeeCCCCCCHHHHHHHHHH
Confidence 221111 24678888899998887654
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-12 Score=102.92 Aligned_cols=164 Identities=16% Similarity=0.119 Sum_probs=89.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|.+|+|||||++.|++... .. ....++... ...... ++ ..+.++||+|...... +.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~--------~~-- 66 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEF-PE---EYHPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYER--------LR-- 66 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-Cc---ccCCcccceEEEEEEE-CCEEEEEEEEECCCChhccc--------cc--
Confidence 5899999999999999999974332 11 111122111 112222 33 3467999999654211 11
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc-CC-CchHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH-EC-PKPLKEI 172 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~-~~-~~~~~~~ 172 (363)
...+..++++++++++++.-+-... .++..+..... + .|+++|.||+|+.... ...+..... .. ......+
T Consensus 67 -~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~--~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 141 (187)
T cd04129 67 -PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-N--VPVILVGLKKDLRQDA-VAKEEYRTQRFVPIQQGKRV 141 (187)
T ss_pred -hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhhhCc-ccccccccCCcCCHHHHHHH
Confidence 1133577999999998733222222 34455544333 2 3999999999975321 011000000 00 0011222
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+...+ ..+|+.++.+++++++.+.+.+
T Consensus 142 ~~~~~~~~~-----~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 142 AKEIGAKKY-----MECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred HHHhCCcEE-----EEccCCCCCCHHHHHHHHHHHH
Confidence 333332122 2568888999999999887654
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-12 Score=115.28 Aligned_cols=168 Identities=13% Similarity=0.140 Sum_probs=97.7
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc-cccccCCCCCceeeEeEEEEe--------------e-----------CCcE
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVL--------------K-----------DGQV 70 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~-~~~~~~~~~~t~~~~~~~~~~--------------~-----------~~~~ 70 (363)
.+..+|+++|+.|+|||||+.+|+|... +.......+.|....+....+ . ....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 4558999999999999999999987521 111111223344332211111 0 0257
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCC-CHHHHHHHHHHHHHhccccccceEEEEeCCCC
Q 017924 71 VNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (363)
Q Consensus 71 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~ 149 (363)
++|+||||.. .+...+......+|++++|+|+++.. .......+..+.. .+. .++++|+||+|+
T Consensus 87 i~liDtPG~~-----------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~Dl 151 (411)
T PRK04000 87 VSFVDAPGHE-----------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKIDL 151 (411)
T ss_pred EEEEECCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEeecc
Confidence 8999999942 23333333344679999999998554 4444555554433 232 268899999999
Q ss_pred CCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 150 LEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
... ..+...... +..++...... .......|+..+.++.+|++.|...+.
T Consensus 152 ~~~--~~~~~~~~~-----i~~~l~~~~~~---~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 152 VSK--ERALENYEQ-----IKEFVKGTVAE---NAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred ccc--hhHHHHHHH-----HHHHhccccCC---CCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 765 333222222 33232211000 011235688889999999998887653
|
|
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=114.51 Aligned_cols=133 Identities=16% Similarity=0.140 Sum_probs=86.7
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+..|+|+|++|+|||||+|+|+..+. +.+++.+.|+++-+......+|..++++||.|+... +++.+...=..
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~dr--sIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~--~~~~iE~~gI~ 340 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDR--SIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREE--SNDGIEALGIE 340 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCc--eEeCCCCCcchhhheeEeecCCeEEEEEeccccccc--cCChhHHHhHH
Confidence 35668999999999999999999998877 334555556655554443349999999999999872 22222222222
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHh-cccc------ccceEEEEeCCCCCCc
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF-GKNV------FDYMIVVFTGGDDLED 152 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~-~~~~------~~~~i~v~n~~D~~~~ 152 (363)
.......+.|++++|+|+....+..+....+.+...- +-.+ .++++++.||.|+...
T Consensus 341 rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 341 RARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 2333445789999999985344444444333333221 1111 2578889999998755
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-12 Score=116.21 Aligned_cols=166 Identities=13% Similarity=0.157 Sum_probs=96.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccccccc-ccCCCCCceeeEeEEEE--------------e-----------eCCcEE
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTV--------------L-----------KDGQVV 71 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~-~~~~~~~t~~~~~~~~~--------------~-----------~~~~~~ 71 (363)
+..+|+++|..++|||||+++|++...... .....+.|....+..+. . ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 457999999999999999999987532100 01112223322211110 0 013578
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCC-CHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 72 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
+++||||..+ +...+......+|++++|+|++... .......+..+. .++. .++++++||+|+.
T Consensus 83 ~liDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~gi---~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-IIGI---KNIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-HcCC---CeEEEEEEccccC
Confidence 9999999432 2233333334679999999998544 344444454443 3332 2689999999988
Q ss_pred CcchhhHHHHhccCCCchHHHHHHhcC-CceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 151 EDHEKTLEDFLGHECPKPLKEILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.. ....+.... +..++.... ..+ .....|+..+.++.+|++.|...+.
T Consensus 148 ~~--~~~~~~~~~-----i~~~l~~~~~~~~----~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 148 SK--EKALENYEE-----IKEFVKGTVAENA----PIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred CH--HHHHHHHHH-----HHhhhhhcccCCC----eEEEEECCCCCChHHHHHHHHHhCC
Confidence 54 333222222 222222110 001 1235688888999999999887654
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-12 Score=102.11 Aligned_cols=157 Identities=17% Similarity=0.230 Sum_probs=83.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+|+|+|..|+|||||++.+++.. |.. ....+ +.......... ++. .+.++||||...... .....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~-~~~-~~~~t-~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~------~~~~~--- 67 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR-FIG-EYDPN-LESLYSRQVTI-DGEQVSLEILDTAGQQQADT------EQLER--- 67 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc-ccc-ccCCC-hHHhceEEEEE-CCEEEEEEEEECCCCccccc------chHHH---
Confidence 58999999999999999987533 211 11111 11111122223 333 567999999763100 01111
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHH-HHhccCCCchHHHHHHhc
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE-DFLGHECPKPLKEILQLC 176 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~-~~~~~~~~~~~~~~~~~~ 176 (363)
.+..+|++++|+|+++.-+-.. ..++..+..........|+++|.||+|+... ..+. +. ...+....
T Consensus 68 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~--------~~~~~~~~ 136 (165)
T cd04146 68 -SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--RQVSTEE--------GEKLASEL 136 (165)
T ss_pred -HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--CccCHHH--------HHHHHHHc
Confidence 2235799999999973322222 2234444443210112389999999997533 1111 11 11222333
Q ss_pred CCceEEecCCCcccccch-hHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGT-EQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~ 207 (363)
+..++ ..|+..+ .++.+++..+.+.
T Consensus 137 ~~~~~------e~Sa~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 137 GCLFF------EVSAAEDYDGVHSVFHELCRE 162 (165)
T ss_pred CCEEE------EeCCCCCchhHHHHHHHHHHH
Confidence 32222 4566666 4888888877654
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-11 Score=99.23 Aligned_cols=170 Identities=17% Similarity=0.134 Sum_probs=94.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee--eEeEEEEee------CCcEEEEEeCCCCCCCCCChHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLK------DGQVVNVIDTPGLFDLSAGSEFVGK 91 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~------~~~~~~l~DtpG~~~~~~~~~~~~~ 91 (363)
.+|+|+|.+|+|||||++.+++... ... ...|+. .....+.+. ....+.++||+|...
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f-~~~---~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~---------- 66 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQV-LGR---PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES---------- 66 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCC---CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh----------
Confidence 3799999999999999999986543 211 112222 122222221 124678999999543
Q ss_pred HHHHHHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhc-----------------cccccceEEEEeCCCCCCcc
Q 017924 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFG-----------------KNVFDYMIVVFTGGDDLEDH 153 (363)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~-----------------~~~~~~~i~v~n~~D~~~~~ 153 (363)
+.......+.++|++++|+|++++-+-... .++..+..... .....|++||.||+|+....
T Consensus 67 -~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 67 -VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred -HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 222333456689999999999855444333 34444443210 01123899999999986431
Q ss_pred hhhHHHHhccCCCchHHHHHHhcCCceEEecCCCccc-ccchhHHHHHHHHHHHHHH
Q 017924 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDE-AKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~ 209 (363)
...-+..+.. .+.+...++...+..+.....+ +....+...|...++.+++
T Consensus 146 ~~~~~~~~~~-----~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (202)
T cd04102 146 ESSGNLVLTA-----RGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIE 197 (202)
T ss_pred ccchHHHhhH-----hhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHH
Confidence 0111122222 4455666777766665442222 1222344455555555543
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.5e-12 Score=91.86 Aligned_cols=155 Identities=18% Similarity=0.242 Sum_probs=101.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|++||..|+|||.|++.++ +..|..+.. .++.++..+..+.. ++ ..+.+|||.| .+.++...
T Consensus 8 fkivlvgnagvgktclvrrft-qglfppgqg-atigvdfmiktvev-~gekiklqiwdtag-----------qerfrsit 73 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFT-QGLFPPGQG-ATIGVDFMIKTVEV-NGEKIKLQIWDTAG-----------QERFRSIT 73 (213)
T ss_pred EEEEEEccCCcCcchhhhhhh-ccCCCCCCC-ceeeeeEEEEEEEE-CCeEEEEEEeeccc-----------hHHHHHHH
Confidence 689999999999999999998 555543221 22344556666666 44 3567999999 34566666
Q ss_pred hccCCCccEEEEEeecCCCCC-HHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...++.+|+++++.|++..-+ .---.++..+.......+ --|+|.||.|+... ..+.+.+ .+-....
T Consensus 74 qsyyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr--revp~qi--------geefs~~ 141 (213)
T KOG0095|consen 74 QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR--REVPQQI--------GEEFSEA 141 (213)
T ss_pred HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh--hhhhHHH--------HHHHHHh
Confidence 677788899999999873222 233457777777655443 34577899998754 3333222 2222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
...|++ .+|+++..+++.|+..+.
T Consensus 142 qdmyfl-----etsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 142 QDMYFL-----ETSAKEADNVEKLFLDLA 165 (213)
T ss_pred hhhhhh-----hhcccchhhHHHHHHHHH
Confidence 444554 667777788888876543
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.8e-12 Score=101.59 Aligned_cols=161 Identities=18% Similarity=0.130 Sum_probs=88.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.+.+.. |.. ....|....+ ..... ++ ..+.++||+|.... ...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~-~~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~ 64 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG-YPT---EYVPTAFDNFSVVVLV-DGKPVRLQLCDTAGQDEF-----------DKL 64 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCC---CCCCceeeeeeEEEEE-CCEEEEEEEEECCCChhh-----------ccc
Confidence 479999999999999999997543 222 1122221111 12223 33 46678999996432 112
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCC----CchHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC----PKPLK 170 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~----~~~~~ 170 (363)
....+.++|++++|+|.+++-+-.. ..++..+..... + .+++++.||+|+.... ..+..+..... .+...
T Consensus 65 ~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~ 140 (173)
T cd04130 65 RPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP-K--APIILVGTQADLRTDV-NVLIQLARYGEKPVSQSRAK 140 (173)
T ss_pred cccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhhccCh-hHHHHHhhcCCCCcCHHHHH
Confidence 2234568899999999874433222 234444443222 2 3899999999986431 11111111000 00122
Q ss_pred HHHHhcCCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
.+....+...+ ...|++.+.+++++++.+-
T Consensus 141 ~~a~~~~~~~~-----~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 141 ALAEKIGACEY-----IECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHHhCCCeE-----EEEeCCCCCCHHHHHHHHH
Confidence 22333232122 2578888899999987653
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=108.70 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=73.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhccccccc--ccC------------------CCCCceeeEeEEEEeeCCcEEEEEeCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKA--SAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~--~~~------------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (363)
.+|+|+|+.|+|||||+++|+....... +.. ....+.......+.+ ++..++++||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence 6899999999999999999974321000 000 012223333445555 7889999999996
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.+. ..... .....+|++++|+|++..+.......++.+.. .+ .|+++++||+|....
T Consensus 82 ~df-------~~~~~----~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-~~----~P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDF-------SEDTY----RTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-RG----IPIITFINKLDREGR 138 (267)
T ss_pred hHH-------HHHHH----HHHHHCCEEEEEEECCCCccHHHHHHHHHHHh-cC----CCEEEEEECCccCCC
Confidence 542 11122 22346799999999975565555444444332 22 289999999997654
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.5e-12 Score=113.30 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=79.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccc--------------cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
.+..+|+++|+.++|||||+++|++...-. ......+.|.......+.. ++..++++||||..
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~-- 86 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHA-- 86 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHH--
Confidence 455899999999999999999998632100 0011234455444333333 56788999999953
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceE-EEEeCCCCCCc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI-VVFTGGDDLED 152 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i-~v~n~~D~~~~ 152 (363)
.+...+......+|++++|+|+.......+...+..+... +. +.+ +++||+|+...
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g~----p~iiVvvNK~D~~~~ 143 (396)
T PRK00049 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFLNKCDMVDD 143 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-CC----CEEEEEEeecCCcch
Confidence 2333333445678999999999766667777777665543 32 555 68999999743
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.5e-12 Score=105.17 Aligned_cols=168 Identities=20% Similarity=0.203 Sum_probs=103.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCce-eeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
-|++||-++|||||||++++.... .......|+ ......+....+..+++.|.||+..-.....-++-++.+.+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP---KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE- 236 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP---KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIE- 236 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC---cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHH-
Confidence 589999999999999999986542 133333333 333444443356778999999987644333445666777765
Q ss_pred cCCCccEEEEEeecCCCCC----HHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 100 AKDGIHAFLVVFSVTNRFS----QEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~----~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
+..++++|+|++ ... ..+. .+...+..+...=..++.+||+||+|.... .+.++.+.+. +..
T Consensus 237 ---Rt~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-~e~~~~~~~~--------l~~ 303 (369)
T COG0536 237 ---RTRVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-EEELEELKKA--------LAE 303 (369)
T ss_pred ---hhheeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC-HHHHHHHHHH--------HHH
Confidence 447899999987 322 2332 233334433222233489999999995543 1444433333 222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.++.....+ .|+.++.++..|+..+..++..
T Consensus 304 ~~~~~~~~~-----ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 304 ALGWEVFYL-----ISALTREGLDELLRALAELLEE 334 (369)
T ss_pred hcCCCccee-----eehhcccCHHHHHHHHHHHHHH
Confidence 222222221 4777788999999988887765
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=116.09 Aligned_cols=156 Identities=13% Similarity=0.100 Sum_probs=91.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhccccccc-------------------------------ccCCCCCceeeEeEEEEeeCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKA-------------------------------SAGSSGVTKTCEMKTTVLKDG 68 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~ 68 (363)
.+|+++|+.++|||||++.|+....... .....+.|.+.....+.+ ++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 4899999999999999999863321000 001233455555555555 67
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCC
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D 148 (363)
..++|+||||..+ +...+......+|++++|+|+...+.......+..+.. ++. .++++++||+|
T Consensus 80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~-~~~---~~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASL-LGI---RHVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHH-cCC---CcEEEEEEecc
Confidence 7899999999543 22222234457899999999875665555555444443 232 26889999999
Q ss_pred CCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHH
Q 017924 149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (363)
Q Consensus 149 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (363)
....+...+++.... +..++...+.... .....|+..+.++..
T Consensus 145 ~~~~~~~~~~~i~~~-----~~~~~~~~~~~~~---~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 145 LVDYDEEVFENIKKD-----YLAFAEQLGFRDV---TFIPLSALKGDNVVS 187 (406)
T ss_pred cccchHHHHHHHHHH-----HHHHHHHcCCCCc---cEEEeecccCCCCcc
Confidence 875422334444443 4444444332110 112446666655543
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.6e-12 Score=97.17 Aligned_cols=159 Identities=18% Similarity=0.198 Sum_probs=105.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|++||.+|+|||+|+-.+. .+.|.. ....++-++-....+.. ++ ..+.+|||.|.. .+...+
T Consensus 13 ~kvlliGDs~vGKt~~l~rf~-d~~f~~-~~~sTiGIDFk~kti~l-~g~~i~lQiWDtaGQe-----------rf~ti~ 78 (207)
T KOG0078|consen 13 FKLLLIGDSGVGKTCLLLRFS-DDSFNT-SFISTIGIDFKIKTIEL-DGKKIKLQIWDTAGQE-----------RFRTIT 78 (207)
T ss_pred EEEEEECCCCCchhHhhhhhh-hccCcC-CccceEEEEEEEEEEEe-CCeEEEEEEEEcccch-----------hHHHHH
Confidence 699999999999999999887 444332 22222333444444444 43 356799999943 444455
Q ss_pred hccCCCccEEEEEeecCCCCC-HHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
..++.+++++++|+|+++..+ .+...+++.+.++....+ +.+||.||+|+... ..+. .+.-..+....
T Consensus 79 ~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v--~~~LvGNK~D~~~~--R~V~-------~e~ge~lA~e~ 147 (207)
T KOG0078|consen 79 TAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDV--VKILVGNKCDLEEK--RQVS-------KERGEALAREY 147 (207)
T ss_pred HHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCC--cEEEeecccccccc--cccc-------HHHHHHHHHHh
Confidence 556678899999999984444 344568888888766555 89999999998753 1110 11133455555
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+..++ ++|++.+.++.+.+-.|.+.+.
T Consensus 148 G~~F~------EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 148 GIKFF------ETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred CCeEE------EccccCCCCHHHHHHHHHHHHH
Confidence 55555 5788888999988776665543
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=103.61 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=96.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+++|..|||||||++.|.........+ |....+..+.+ .+..+.++|..|-.. +...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~p-----T~g~~~~~i~~-~~~~~~~~d~gG~~~-----------~~~~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIP-----TIGFNIEEIKY-KGYSLTIWDLGGQES-----------FRPL 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEE-----ESSEEEEEEEE-TTEEEEEEEESSSGG-----------GGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCc-----ccccccceeee-CcEEEEEEecccccc-----------cccc
Confidence 556899999999999999999998654322112 32333444455 788899999998432 3334
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccc--cccceEEEEeCCCCCCc-chhhHHHHhccCCCchHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~~~~ 173 (363)
+...+..+++++||+|.++.-.-. ...+.+..++... ...|++|+.||.|.... ....+.+.+.. .. +
T Consensus 75 w~~y~~~~~~iIfVvDssd~~~l~--e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l------~~-l 145 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPERLQ--EAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGL------EK-L 145 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGGGHH--HHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTG------GG-T
T ss_pred ceeeccccceeEEEEecccceeec--ccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhh------hh-c
Confidence 445567889999999987221111 1122233333221 12499999999998654 11223333221 11 1
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
. ....+.++ ..++.++.++.+.+++|.+.
T Consensus 146 ~-~~~~~~v~----~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 146 K-NKRPWSVF----SCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp T-SSSCEEEE----EEBTTTTBTHHHHHHHHHHH
T ss_pred c-cCCceEEE----eeeccCCcCHHHHHHHHHhc
Confidence 1 12333332 45777889999999987654
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.7e-12 Score=105.36 Aligned_cols=135 Identities=18% Similarity=0.212 Sum_probs=79.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcccc-----------------------------cccccCCCCCceeeEeEEEEeeCCcEE
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKA-----------------------------FKASAGSSGVTKTCEMKTTVLKDGQVV 71 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~-----------------------------~~~~~~~~~~t~~~~~~~~~~~~~~~~ 71 (363)
+|+|+|+.|+|||||+.+|+.... +.......+.|.+.....+.+ .+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 489999999999999999852211 000011233444455555556 78899
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-------CCHHHHHHHHHHHHHhccccccceEEEE
Q 017924 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (363)
Q Consensus 72 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~i~v~ 144 (363)
+++||||..+ +...+......+|++++|+|++.. ........+..+. ..+. .++++++
T Consensus 80 ~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~iiivv 144 (219)
T cd01883 80 TILDAPGHRD-----------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGV---KQLIVAV 144 (219)
T ss_pred EEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCC---CeEEEEE
Confidence 9999999532 122222334568999999998742 1222333333332 2332 3788999
Q ss_pred eCCCCCCc--chhhHHHHhccCCCchHHHHHHhc
Q 017924 145 TGGDDLED--HEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 145 n~~D~~~~--~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
||+|+... +...++..+.. +...+...
T Consensus 145 NK~Dl~~~~~~~~~~~~i~~~-----l~~~l~~~ 173 (219)
T cd01883 145 NKMDDVTVNWSEERYDEIKKE-----LSPFLKKV 173 (219)
T ss_pred EccccccccccHHHHHHHHHH-----HHHHHHHc
Confidence 99998732 12334445444 55455443
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.1e-12 Score=115.82 Aligned_cols=44 Identities=18% Similarity=0.106 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcchhhHHHHhcc
Q 017924 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~~~l~~~~~~ 163 (363)
..++++.+.++.+.+.++... -++++ +||+|...- .||++|+..
T Consensus 152 ~~LSGG~r~Rv~LA~aL~~~p---DlLLLDEPTNHLD~~~i--~WLe~~L~~ 198 (530)
T COG0488 152 SSLSGGWRRRVALARALLEEP---DLLLLDEPTNHLDLESI--EWLEDYLKR 198 (530)
T ss_pred hhcCHHHHHHHHHHHHHhcCC---CEEEEcCCCcccCHHHH--HHHHHHHHh
Confidence 389999999999999998763 34444 899999877 889888876
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.41 E-value=8e-12 Score=97.85 Aligned_cols=152 Identities=18% Similarity=0.143 Sum_probs=85.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|.+|+|||||++.+++.. |...... +.......+.. ++ ..+.++||.|.... .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~-f~~~~~~---~~~~~~~~i~~-~~~~~~l~i~D~~g~~~~---------~----- 61 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGS-YVQLESP---EGGRFKKEVLV-DGQSHLLLIRDEGGAPDA---------Q----- 61 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCC-CCCCCCC---CccceEEEEEE-CCEEEEEEEEECCCCCch---------h-----
Confidence 379999999999999998766432 2211111 11111122333 44 35778999996430 1
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.+...|++++|+|.+++-+-.. ..++..+...... ...|+++|.||.|+.......+... ....+....
T Consensus 62 --~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~~~v~~~-------~~~~~~~~~ 131 (158)
T cd04103 62 --FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNI-SEIPLILVGTQDAISESNPRVIDDA-------RARQLCADM 131 (158)
T ss_pred --HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHHhhhcCCcccCHH-------HHHHHHHHh
Confidence 1235799999999985544444 3445555444321 1238999999988642100111100 011222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
+...+ ..+|++.+.++.+++..+.
T Consensus 132 ~~~~~-----~e~SAk~~~~i~~~f~~~~ 155 (158)
T cd04103 132 KRCSY-----YETCATYGLNVERVFQEAA 155 (158)
T ss_pred CCCcE-----EEEecCCCCCHHHHHHHHH
Confidence 22122 2678888999999988764
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-12 Score=121.39 Aligned_cols=160 Identities=11% Similarity=0.082 Sum_probs=93.3
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhccccccc--------------cc-----------------CCCCCceeeEeEEE
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SA-----------------GSSGVTKTCEMKTT 63 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~ 63 (363)
+..+..+|+|+|+.++|||||++.|+....... +. -..+.|.+.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 445668999999999999999999985432110 00 01223444444444
Q ss_pred EeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE
Q 017924 64 VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (363)
Q Consensus 64 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v 143 (363)
.+ ++..++|+||||..+ +...+......+|++++|+|+...........+..+..+ +. .+++++
T Consensus 100 ~~-~~~~~~liDtPG~~~-----------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivv 163 (632)
T PRK05506 100 AT-PKRKFIVADTPGHEQ-----------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLA 163 (632)
T ss_pred cc-CCceEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEE
Confidence 44 677889999999532 222222234578999999998755554444444444332 32 278899
Q ss_pred EeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHH
Q 017924 144 FTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVR 198 (363)
Q Consensus 144 ~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (363)
+||+|....+...++..... +..++...+... ......|+..+.++.
T Consensus 164 vNK~D~~~~~~~~~~~i~~~-----i~~~~~~~~~~~---~~iipiSA~~g~ni~ 210 (632)
T PRK05506 164 VNKMDLVDYDQEVFDEIVAD-----YRAFAAKLGLHD---VTFIPISALKGDNVV 210 (632)
T ss_pred EEecccccchhHHHHHHHHH-----HHHHHHHcCCCC---ccEEEEecccCCCcc
Confidence 99999875322344444444 444444333210 011244666666655
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.4e-12 Score=114.47 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=92.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccccccc-----------------------------ccCCCCCceeeEeEEEEeeC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA-----------------------------SAGSSGVTKTCEMKTTVLKD 67 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~ 67 (363)
.+..+|+++|+.++|||||++.|+....... .....+.|.+.....+.+ +
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~ 83 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-D 83 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-C
Confidence 3457999999999999999999974211000 001234555555555555 6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC---CCHHHHHHHHHHHHHhccccccceEEEE
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR---FSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~i~v~ 144 (363)
+..++|+||||..+ +...+.......|++++|+|+++. ........+..+ ..++. .++++++
T Consensus 84 ~~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVvi 148 (426)
T TIGR00483 84 KYEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVAI 148 (426)
T ss_pred CeEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEEE
Confidence 77899999999432 223333344678999999999744 222222222222 22332 2788999
Q ss_pred eCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHH
Q 017924 145 TGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (363)
Q Consensus 145 n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (363)
||+|+...+...++..... +..++...+.... .......|+..+.++.+
T Consensus 149 NK~Dl~~~~~~~~~~~~~e-----i~~~~~~~g~~~~-~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 149 NKMDSVNYDEEEFEAIKKE-----VSNLIKKVGYNPD-TVPFIPISAWNGDNVIK 197 (426)
T ss_pred EChhccCccHHHHHHHHHH-----HHHHHHHcCCCcc-cceEEEeeccccccccc
Confidence 9999874322334444444 5555554432100 00112456666766665
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-11 Score=111.21 Aligned_cols=121 Identities=18% Similarity=0.248 Sum_probs=77.7
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcc------ccccc--------ccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGR------KAFKA--------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~------~~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
+.+..+|+++|+.++|||||+++|++. ..+.. ..-..+.|.+.....+.. ++..++++||||..+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD 87 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH
Confidence 456689999999999999999999843 11100 011134455443333333 567789999999643
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
+...+......+|++++|+|+...........+..+... +. .++++++||+|+...
T Consensus 88 -----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 88 -----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GV---PYIVVFLNKCDMVDD 143 (394)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEecccCCH
Confidence 222222333477999999999755666666666665443 32 145578999998754
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-12 Score=97.04 Aligned_cols=159 Identities=23% Similarity=0.252 Sum_probs=98.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE--EEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
..+|+|+|..|+|||||+-.+. ...|+.. ...|+..-... +.. ++ ..+.+|||.|... +.
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfv-k~~F~e~---~e~TIGaaF~tktv~~-~~~~ikfeIWDTAGQER-----------y~ 68 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFV-KDQFHEN---IEPTIGAAFLTKTVTV-DDNTIKFEIWDTAGQER-----------YH 68 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhh-hCccccc---cccccccEEEEEEEEe-CCcEEEEEEEEcCCccc-----------cc
Confidence 4799999999999999997665 3334331 11122222111 122 33 4667999999543 44
Q ss_pred HHHhccCCCccEEEEEeecCCCCC-HHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
.....+++++++.|+|+|+++.-+ ...+.++..+....+.++ .+.|+.||+|+...-....++ .....
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~~R~V~~~e---------a~~yA 137 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLERREVEFEE---------AQAYA 137 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhhcccccHHH---------HHHHH
Confidence 455667889999999999983322 233556777776655432 333578999998631112221 22233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+..+..++ ++|++++.++++++..|.+.+..
T Consensus 138 e~~gll~~------ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 138 ESQGLLFF------ETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred HhcCCEEE------EEecccccCHHHHHHHHHHhccC
Confidence 33333333 67889999999999988877653
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.1e-11 Score=111.38 Aligned_cols=154 Identities=17% Similarity=0.203 Sum_probs=91.9
Q ss_pred cCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCcc
Q 017924 26 GRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIH 105 (363)
Q Consensus 26 G~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (363)
|.+|+|||||+|.|+|... ..+.. .+.|++.....+.+ ++..+.++||||..+...... .+.+.+.. .....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~-pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~--~e~v~~~~-l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNW-PGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSL--EEEVARDY-LLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCC-CCeEEEEEEEEEEE-CCeEEEEEECCCccccCccch--HHHHHHHH-HhhcCCC
Confidence 8999999999999998764 22222 23454444444555 677889999999876432211 11222221 1224689
Q ss_pred EEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecC
Q 017924 106 AFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185 (363)
Q Consensus 106 ~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (363)
++++|+|.+ .+... ......+.+ .+ .|+++++||+|.... ..+... ...+.+..+..+
T Consensus 75 vvI~VvDat-~ler~-l~l~~ql~~---~~--~PiIIVlNK~Dl~~~--~~i~~d--------~~~L~~~lg~pv----- 132 (591)
T TIGR00437 75 LVVNVVDAS-NLERN-LYLTLQLLE---LG--IPMILALNLVDEAEK--KGIRID--------EEKLEERLGVPV----- 132 (591)
T ss_pred EEEEEecCC-cchhh-HHHHHHHHh---cC--CCEEEEEehhHHHHh--CCChhh--------HHHHHHHcCCCE-----
Confidence 999999987 43322 222222222 12 389999999998643 211111 122223333222
Q ss_pred CCcccccchhHHHHHHHHHHHHH
Q 017924 186 KTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 186 ~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...|++++.+++++++.+.+..
T Consensus 133 -v~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 133 -VPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred -EEEECCCCCCHHHHHHHHHHHh
Confidence 3567888899999999887654
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=91.33 Aligned_cols=161 Identities=15% Similarity=0.141 Sum_probs=94.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|||.+|+|||||+-.++ .+.|.. ....++-++..+...... ....+.+|||.| .+.++....
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv-~~~fd~-~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG-----------qErFRtLTp 78 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFV-SNTFDD-LHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG-----------QERFRTLTP 78 (209)
T ss_pred EEEEEEccCCccHHHHHHHHH-hcccCc-cCCceeeeeEEEEEEEEcCceEEEEEEeccc-----------hHhhhccCH
Confidence 799999999999999998887 333332 112223344455555552 234778999999 345666666
Q ss_pred ccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
.+++++.++|+|.|++.+-+-... .+++.+..++... ..-.++|.||+|.... . .+.+ .+ -..+... +
T Consensus 79 SyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~-diikmlVgNKiDkes~--R----~V~r--eE-G~kfAr~-h 147 (209)
T KOG0080|consen 79 SYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNP-DIIKMLVGNKIDKESE--R----VVDR--EE-GLKFARK-H 147 (209)
T ss_pred hHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCc-cHhHhhhcccccchhc--c----cccH--HH-HHHHHHh-h
Confidence 778899999999999844333222 3444444443322 1123467899997643 1 1111 00 0011111 2
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
...+. +.|++...++...++.+-..+-
T Consensus 148 ~~LFi-----E~SAkt~~~V~~~FeelveKIi 174 (209)
T KOG0080|consen 148 RCLFI-----ECSAKTRENVQCCFEELVEKII 174 (209)
T ss_pred CcEEE-----EcchhhhccHHHHHHHHHHHHh
Confidence 22222 5577777888887776655443
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.1e-12 Score=103.72 Aligned_cols=115 Identities=20% Similarity=0.309 Sum_probs=72.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccc--------------cCCCCCceeeEeEEEEee---------CCcEEEEEeC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AGSSGVTKTCEMKTTVLK---------DGQVVNVIDT 76 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------~~~~~~l~Dt 76 (363)
++|+|+|+.++|||||+++|+........ ....+.|+........+. .+..++++||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 37999999999999999999744311000 011223333322222331 1567889999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
||..+. ... ...+...+|++++|+|+...........++..... + .++++++||+|+.
T Consensus 81 PG~~~f-------~~~----~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~-~----~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDF-------SSE----VTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE-R----VKPVLVINKIDRL 138 (222)
T ss_pred CCcccc-------HHH----HHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCcc
Confidence 997763 122 22333467999999999866766666665554432 2 2799999999976
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.38 E-value=8e-12 Score=116.34 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=72.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-----------------CCcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~l~DtpG~~~~ 82 (363)
..|+|+|+.|+|||||+|.|++..... ...++.|.......+.+. ....++|+||||...
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~--~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~- 81 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAK--REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA- 81 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccc--ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh-
Confidence 589999999999999999999875411 112223322222211110 012378999999543
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
+......++...|++++|+|+++.+.......+..+... + .|+++++||+|+..
T Consensus 82 ----------f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-~----vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 82 ----------FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-K----TPFVVAANKIDRIP 135 (590)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-C----CCEEEEEECCCccc
Confidence 222222344578999999999866666666665554432 2 28999999999863
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-11 Score=91.93 Aligned_cols=161 Identities=17% Similarity=0.218 Sum_probs=104.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..+|+++|..++||||||+... .+.|.. ....++-++-....+.+. ....+.+|||.| .+.++..+
T Consensus 22 ~~KlVflGdqsVGKTslItRf~-yd~fd~-~YqATIGiDFlskt~~l~d~~vrLQlWDTAG-----------QERFrsli 88 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFM-YDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QERFRSLI 88 (221)
T ss_pred EEEEEEEccCccchHHHHHHHH-Hhhhcc-cccceeeeEEEEEEEEEcCcEEEEEEEeccc-----------HHHHhhhh
Confidence 3699999999999999999887 333322 112222222223333331 234678999999 45677777
Q ss_pred hccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccc-cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~-~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
..++++..++++|+|++++-+-+ ...+++-+....|.+ + .+++|.||.|+.+.-+-..++- ......
T Consensus 89 psY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~v--iI~LVGnKtDL~dkrqvs~eEg---------~~kAke 157 (221)
T KOG0094|consen 89 PSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDV--IIFLVGNKTDLSDKRQVSIEEG---------ERKAKE 157 (221)
T ss_pred hhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCce--EEEEEcccccccchhhhhHHHH---------HHHHHH
Confidence 88888999999999998666643 356777777766653 3 5667789999986611111111 122333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.+..|. .++++.+.++..|+..|...+.
T Consensus 158 l~a~f~------etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 158 LNAEFI------ETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred hCcEEE------EecccCCCCHHHHHHHHHHhcc
Confidence 344333 5678889999999998777654
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=114.32 Aligned_cols=115 Identities=21% Similarity=0.369 Sum_probs=79.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc-ccccc-------------cCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK-AFKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (363)
.+|+|||+.++|||||++.|+... .|... ....++|+......+.| ++..++++||||..+.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF--- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADF--- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHH---
Confidence 489999999999999999997431 11110 11234666666667777 7899999999996552
Q ss_pred hHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
..++.+ +...+|++++|+|+........+.++..+... + .++++++||+|...
T Consensus 78 ----~~ev~~----~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-~----ip~IVviNKiD~~~ 130 (594)
T TIGR01394 78 ----GGEVER----VLGMVDGVLLLVDASEGPMPQTRFVLKKALEL-G----LKPIVVINKIDRPS 130 (594)
T ss_pred ----HHHHHH----HHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-C----CCEEEEEECCCCCC
Confidence 222322 33467999999999755555566666655442 2 27899999999864
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-11 Score=97.77 Aligned_cols=150 Identities=15% Similarity=0.075 Sum_probs=88.4
Q ss_pred EcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE--EEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccC
Q 017924 25 LGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (363)
Q Consensus 25 vG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (363)
||..|+|||||++.+++.. |.. ....|+...+.. +.+. ....+.|+||+|... +......++
T Consensus 1 vG~~~vGKTsLi~r~~~~~-f~~---~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~-----------~~~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE-FEK---KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK-----------FGGLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC-CCC---CCCCceeEEEEEEEEEECCEEEEEEEEECCCchh-----------hhhhhHHHh
Confidence 6999999999999988433 221 112233222222 2221 235788999999543 222233356
Q ss_pred CCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCce
Q 017924 102 DGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (363)
Q Consensus 102 ~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 180 (363)
.+++++++|+|++++.+-... .++..+...+. . .++++|.||+|+... ....+. . .+....+..+
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~--~piilvgNK~Dl~~~--~v~~~~--------~-~~~~~~~~~~ 131 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDVKDR--KVKAKS--------I-TFHRKKNLQY 131 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccccc--cCCHHH--------H-HHHHHcCCEE
Confidence 688999999999844433322 34444555432 2 389999999997532 111111 1 1222222222
Q ss_pred EEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+ .+|++.+.++.+++..+...+.
T Consensus 132 ~------e~SAk~~~~v~~~F~~l~~~i~ 154 (200)
T smart00176 132 Y------DISAKSNYNFEKPFLWLARKLI 154 (200)
T ss_pred E------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2 5788889999999998876653
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-11 Score=104.47 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=72.4
Q ss_pred EEEEEcCCCCchHHHHHHhhccccc--c-cccCC-------------CCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAF--K-ASAGS-------------SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~--~-~~~~~-------------~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (363)
+|+|+|+.|+|||||++.|++.... . ..... ...++......+.+ ++..++++||||..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f-- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADF-- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHH--
Confidence 5899999999999999998743210 0 00000 12223333444555 6788999999996531
Q ss_pred ChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
...... +...+|++++|++++..........++.+.. .+ .|.++++||+|....
T Consensus 78 -----~~~~~~----~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~-~~----~p~iivvNK~D~~~~ 131 (268)
T cd04170 78 -----VGETRA----ALRAADAALVVVSAQSGVEVGTEKLWEFADE-AG----IPRIIFINKMDRERA 131 (268)
T ss_pred -----HHHHHH----HHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECCccCCC
Confidence 122222 2336799999999885555555555554433 22 289999999998754
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-11 Score=91.87 Aligned_cols=163 Identities=15% Similarity=0.092 Sum_probs=95.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
++|.|.|.+|+|||||+|.++...- .. ....++..+-....+.+ ++. .+.+|||.| .+.+...-
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF-~~-qykaTIgadFltKev~V-d~~~vtlQiWDTAG-----------QERFqsLg 75 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKF-SQ-QYKATIGADFLTKEVQV-DDRSVTLQIWDTAG-----------QERFQSLG 75 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH-HH-HhccccchhheeeEEEE-cCeEEEEEEEeccc-----------HHHhhhcc
Confidence 6999999999999999999985543 11 11111222222223333 333 456899999 34455555
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHH-HHHHHhc--cccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~-~~~~~~~--~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
..+++++|.+++++++.+.-+.+....++ .+..... .....|++|+.||+|.... .....-... ...+..
T Consensus 76 ~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~--~~r~VS~~~-----Aq~WC~ 148 (210)
T KOG0394|consen 76 VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG--KSRQVSEKK-----AQTWCK 148 (210)
T ss_pred cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC--ccceeeHHH-----HHHHHH
Confidence 66788999999999987444444443332 2222211 1233489999999998653 111101111 222333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.-++..++ ++|++...++.+.++.+....
T Consensus 149 s~gnipyf-----EtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 149 SKGNIPYF-----ETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred hcCCceeE-----EecccccccHHHHHHHHHHHH
Confidence 22333332 678888889998888776654
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=111.87 Aligned_cols=170 Identities=11% Similarity=0.113 Sum_probs=102.2
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcccccccc-cCCCCCceeeEeEEE---------------Eee------------
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT---------------VLK------------ 66 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~-~~~~~~t~~~~~~~~---------------~~~------------ 66 (363)
+.....+|+++|+...|||||+++|+|...+... ....+.|.+..+... .+.
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 3456689999999999999999999986542211 111223322221111 000
Q ss_pred -----CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-CCHHHHHHHHHHHHHhccccccce
Q 017924 67 -----DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYM 140 (363)
Q Consensus 67 -----~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ 140 (363)
-...++|+|+||.. .+.+.+......+|++++|+++... .....+..+..+ ..++-. ++
T Consensus 110 ~~~~~~~~~i~~IDtPGH~-----------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lgi~---~i 174 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHD-----------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIMKLK---HI 174 (460)
T ss_pred cccccccceEeeeeCCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHcCCC---cE
Confidence 02468899999942 3333333444578999999999743 233334444333 334432 78
Q ss_pred EEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 141 i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
++++||+|+... ..+++.... +..++..... ........|+..+.++..|++.|...+.
T Consensus 175 IVvlNKiDlv~~--~~~~~~~~e-----i~~~l~~~~~---~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 175 IILQNKIDLVKE--AQAQDQYEE-----IRNFVKGTIA---DNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred EEEEecccccCH--HHHHHHHHH-----HHHHHHhhcc---CCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 999999999865 555544444 4444332211 1112346788889999999999987554
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=111.27 Aligned_cols=140 Identities=17% Similarity=0.217 Sum_probs=85.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc---------------------c--------ccccCCCCCceeeEeEEEEeeC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA---------------------F--------KASAGSSGVTKTCEMKTTVLKD 67 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~---------------------~--------~~~~~~~~~t~~~~~~~~~~~~ 67 (363)
.+..+|+++|+.++|||||+..|+.... + ....-..+.|.+.....+.+ +
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~ 83 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-P 83 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-C
Confidence 3457999999999999999998863110 0 00011233455555555555 6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCC-------CHHHHHHHHHHHHHhccccccce
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDYM 140 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~ 140 (363)
+..++|+||||..+ +...+......+|++++|+|+.... ....+..+..+.. .|-. ++
T Consensus 84 ~~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi~---~i 148 (446)
T PTZ00141 84 KYYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGVK---QM 148 (446)
T ss_pred CeEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCCC---eE
Confidence 78999999999443 3333333445789999999987433 2344444544433 3432 57
Q ss_pred EEEEeCCCCCC--cchhhHHHHhccCCCchHHHHHHhcC
Q 017924 141 IVVFTGGDDLE--DHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 141 i~v~n~~D~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
++++||+|... .+...+++.... +...+...+
T Consensus 149 iv~vNKmD~~~~~~~~~~~~~i~~~-----i~~~l~~~g 182 (446)
T PTZ00141 149 IVCINKMDDKTVNYSQERYDEIKKE-----VSAYLKKVG 182 (446)
T ss_pred EEEEEccccccchhhHHHHHHHHHH-----HHHHHHhcC
Confidence 88999999532 222455555555 666655443
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=101.35 Aligned_cols=115 Identities=20% Similarity=0.265 Sum_probs=69.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhccccccc---c--------------cCCCCCceeeEeEEEEee----CCcEEEEEeCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKA---S--------------AGSSGVTKTCEMKTTVLK----DGQVVNVIDTPG 78 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~---~--------------~~~~~~t~~~~~~~~~~~----~~~~~~l~DtpG 78 (363)
.+|+|+|+.|+|||||++.|++...... . ....+.+.......+.+. ....++++||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 3699999999999999999986432110 0 001112222222222221 235788999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
..+. ... .......+|++++|+|+.+..+......++.+.. .+ .++++|+||+|..
T Consensus 81 ~~~f-------~~~----~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~-~~----~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNF-------MDE----VAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL-EG----LPIVLVINKIDRL 136 (213)
T ss_pred Ccch-------HHH----HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECcccC
Confidence 7652 111 2222346799999999875555544444443322 12 3899999999986
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-11 Score=114.21 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=96.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc------ccccc-------CCCCCceeeEeEEEEee--C--CcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA------FKASA-------GSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~------~~~~~-------~~~~~t~~~~~~~~~~~--~--~~~~~l~DtpG~~~~ 82 (363)
.+|+|+|+.|+|||||++.|+.... +.... ...++|.......+.|. + ...++||||||..+.
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 5899999999999999999975421 11101 01234544444334332 2 257899999997652
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~ 162 (363)
..... .++..+|++++|+|+++..+......+..... .. .++++|+||+|+... . .+....
T Consensus 84 -------~~~v~----~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~--ipiIiViNKiDl~~~--~-~~~~~~ 144 (595)
T TIGR01393 84 -------SYEVS----RSLAACEGALLLVDAAQGIEAQTLANVYLALE---ND--LEIIPVINKIDLPSA--D-PERVKK 144 (595)
T ss_pred -------HHHHH----HHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cC--CCEEEEEECcCCCcc--C-HHHHHH
Confidence 11222 23446799999999986666555544433322 12 279999999998643 1 111222
Q ss_pred cCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
. +...+ +.. +......|+.++.++.+|++.|...+.
T Consensus 145 e-----l~~~l---g~~---~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 145 E-----IEEVI---GLD---ASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred H-----HHHHh---CCC---cceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 2 22222 111 011235688899999999998877664
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-11 Score=105.22 Aligned_cols=160 Identities=15% Similarity=0.182 Sum_probs=115.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
..|-|+|+...||||||++|.+... .....|++|....-+.+....|..++|+||||. ..|...-.+
T Consensus 154 PVVTiMGHVDHGKTTLLD~lRks~V--AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH-----------aAF~aMRaR 220 (683)
T KOG1145|consen 154 PVVTIMGHVDHGKTTLLDALRKSSV--AAGEAGGITQHIGAFTVTLPSGKSITFLDTPGH-----------AAFSAMRAR 220 (683)
T ss_pred CeEEEeecccCChhhHHHHHhhCce--ehhhcCCccceeceEEEecCCCCEEEEecCCcH-----------HHHHHHHhc
Confidence 5899999999999999999987765 334467788888888887778999999999994 345555556
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
.....|.+++|+.+++..-......++..+.. .+ |+++.+||+|....+-+.....|.. ..-.++.+|+.
T Consensus 221 GA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A---~V--piVvAinKiDkp~a~pekv~~eL~~-----~gi~~E~~GGd 290 (683)
T KOG1145|consen 221 GANVTDIVVLVVAADDGVMPQTLEAIKHAKSA---NV--PIVVAINKIDKPGANPEKVKRELLS-----QGIVVEDLGGD 290 (683)
T ss_pred cCccccEEEEEEEccCCccHhHHHHHHHHHhc---CC--CEEEEEeccCCCCCCHHHHHHHHHH-----cCccHHHcCCc
Confidence 66778999999998877776666666655543 33 9999999999876532333222222 22235666776
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
..++ ..|+.++.++..|.+.+.-
T Consensus 291 VQvi----piSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 291 VQVI----PISALTGENLDLLEEAILL 313 (683)
T ss_pred eeEE----EeecccCCChHHHHHHHHH
Confidence 6653 5678888898888776543
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.6e-11 Score=106.27 Aligned_cols=163 Identities=17% Similarity=0.194 Sum_probs=115.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..|.++|+...|||||+..|-+... ..--.|++|.+..-+.+... +...++|+||||.. .|...-
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~V--a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHe-----------AFt~mR 72 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNV--AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHE-----------AFTAMR 72 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCcc--ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHH-----------HHHHHH
Confidence 5899999999999999999987766 32345777877777777764 34789999999943 455544
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
.+...-.|.+++|+++++.+-......+..++.. .+ |+++.+||+|+...+-.....-+.. ..-..+.++
T Consensus 73 aRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a---~v--P~iVAiNKiDk~~~np~~v~~el~~-----~gl~~E~~g 142 (509)
T COG0532 73 ARGASVTDIAILVVAADDGVMPQTIEAINHAKAA---GV--PIVVAINKIDKPEANPDKVKQELQE-----YGLVPEEWG 142 (509)
T ss_pred hcCCccccEEEEEEEccCCcchhHHHHHHHHHHC---CC--CEEEEEecccCCCCCHHHHHHHHHH-----cCCCHhhcC
Confidence 5566677999999999988888887777777664 33 9999999999986522222222222 111233334
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+...+ ...|++++.++.+|++.+.....
T Consensus 143 g~v~~----VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 143 GDVIF----VPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred CceEE----EEeeccCCCCHHHHHHHHHHHHH
Confidence 43322 26789999999999998766544
|
|
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.6e-11 Score=89.43 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=96.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.++.++|..|+|||+|+...+... |.+.. ..+.-++-....+.. ++ .++.+|||.|.. .+....
T Consensus 7 fKyIiiGd~gVGKSclllrf~~kr-F~~~h-d~TiGvefg~r~~~i-d~k~IKlqiwDtaGqe-----------~frsv~ 72 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKR-FQPVH-DLTIGVEFGARMVTI-DGKQIKLQIWDTAGQE-----------SFRSVT 72 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccC-ccccc-cceeeeeeceeEEEE-cCceEEEEEEecCCcH-----------HHHHHH
Confidence 588999999999999999998554 43322 222333334444555 43 467899999954 344444
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
..++.++.+.|+|+|++.+-+-... .+|.-++.+...+. -++++.||+|+... ..+ -+. .-..+.+.
T Consensus 73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~Nm--vImLiGNKsDL~~r--R~V---s~E----EGeaFA~e- 140 (216)
T KOG0098|consen 73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENM--VIMLIGNKSDLEAR--REV---SKE----EGEAFARE- 140 (216)
T ss_pred HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCc--EEEEEcchhhhhcc--ccc---cHH----HHHHHHHH-
Confidence 5567788999999999855443333 45555555543322 45566799998755 211 111 12223333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
++-.+. ++|++.+.++++.+..+...+
T Consensus 141 hgLifm-----ETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 141 HGLIFM-----ETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred cCceee-----hhhhhhhhhHHHHHHHHHHHH
Confidence 332222 678888888888776555443
|
|
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.6e-11 Score=92.99 Aligned_cols=116 Identities=21% Similarity=0.247 Sum_probs=78.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|++||.+|+|||-|+..++.. -|.. .+..++-++........ ++. ...+|||.|. +.++...
T Consensus 15 FKiVliGDS~VGKsnLlsRftrn-EF~~-~SksTIGvef~t~t~~v-d~k~vkaqIWDTAGQ-----------ERyrAit 80 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRN-EFSL-ESKSTIGVEFATRTVNV-DGKTVKAQIWDTAGQ-----------ERYRAIT 80 (222)
T ss_pred EEEEEeCCCccchhHHHHHhccc-ccCc-ccccceeEEEEeeceee-cCcEEEEeeecccch-----------hhhcccc
Confidence 47999999999999999998844 3332 11222222333333334 443 4569999993 3455556
Q ss_pred hccCCCccEEEEEeecCCCCCH-HHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
...++++.+.++|+|++.+.+- .-.++|+.++.+....+ .+++|.||+|+..
T Consensus 81 SaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~ni--vimLvGNK~DL~~ 133 (222)
T KOG0087|consen 81 SAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNI--VIMLVGNKSDLNH 133 (222)
T ss_pred chhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCe--EEEEeecchhhhh
Confidence 6778899999999999845543 44567777777665544 6778899999864
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-11 Score=112.41 Aligned_cols=116 Identities=18% Similarity=0.287 Sum_probs=78.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc-ccccc-------------cCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK-AFKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (363)
.+|+|+|+.|+|||||++.|++.. .|... ....++|.......+.+ ++..++++||||..+..
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~-- 82 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFG-- 82 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhH--
Confidence 689999999999999999998532 11110 11234455555555566 78899999999976631
Q ss_pred hHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.... .++..+|++++|+|+...........+..+.. .+ .+.++++||+|....
T Consensus 83 -----~~v~----~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~-~g----ip~IVviNKiD~~~a 135 (607)
T PRK10218 83 -----GEVE----RVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA-YG----LKPIVVINKVDRPGA 135 (607)
T ss_pred -----HHHH----HHHHhCCEEEEEEecccCccHHHHHHHHHHHH-cC----CCEEEEEECcCCCCC
Confidence 1222 23356899999999875555555555555443 23 278999999998643
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.9e-12 Score=100.02 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=67.8
Q ss_pred EEEEcCCCCchHHHHHHhhcccccccccCCCCCce-eeEe----------------------------------------
Q 017924 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEM---------------------------------------- 60 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~-~~~~---------------------------------------- 60 (363)
|+|+|..++|||||||+|+|...+..+....+... ....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 78999999999999999999875443322111000 0000
Q ss_pred ------------EEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHH
Q 017924 61 ------------KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128 (363)
Q Consensus 61 ------------~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~ 128 (363)
..........+.|+||||+.+....... .+..++ ...|+++||.++.+.++..+...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~---~~~~~~----~~~d~vi~V~~~~~~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTE---ITEEYL----PKADVVIFVVDANQDLTESDMEFLKQM 153 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSH---HHHHHH----STTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHH---HHHHhh----ccCCEEEEEeccCcccchHHHHHHHHH
Confidence 0001112334789999999764332222 222222 467999999999866666665555554
Q ss_pred HHHhccccccceEEEEeCC
Q 017924 129 PNLFGKNVFDYMIVVFTGG 147 (363)
Q Consensus 129 ~~~~~~~~~~~~i~v~n~~ 147 (363)
...... .+++|+||+
T Consensus 154 ~~~~~~----~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDPDKS----RTIFVLNKA 168 (168)
T ss_dssp HTTTCS----SEEEEEE-G
T ss_pred hcCCCC----eEEEEEcCC
Confidence 443332 588888874
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7e-11 Score=97.76 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=86.6
Q ss_pred CccEEEEEcCCCCchHHHHH-HhhcccccccccCCCCCceeeEeEEEE--ee-CCcEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGN-SILGRKAFKASAGSSGVTKTCEMKTTV--LK-DGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~-~l~g~~~~~~~~~~~~~t~~~~~~~~~--~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
...+|+|+|++|||||||++ .+.|... . ....|....+.... .. ....+.++||+|.... ..+
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~--~---~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~--------~~~ 74 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFE--K---KYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF--------GGL 74 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCC--C---CCCCccceEEEEEEEEECCeEEEEEEEECCCchhh--------hhh
Confidence 44799999999999999996 5555432 1 11112222222221 11 2357789999985431 111
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
. ...+...+++++++|++++.+-.. ..++..+...+. . .+++++.||+|.... ....+ ...+
T Consensus 75 ~---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~~i~lv~nK~Dl~~~--~~~~~---------~~~~ 137 (215)
T PTZ00132 75 R---DGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-N--IPIVLVGNKVDVKDR--QVKAR---------QITF 137 (215)
T ss_pred h---HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccCccc--cCCHH---------HHHH
Confidence 1 122346789999999874443322 223334433322 2 378889999997533 11111 1112
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
....+..++ ..|+..+.++.+.+..|.+.+..
T Consensus 138 ~~~~~~~~~------e~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 138 HRKKNLQYY------DISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred HHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHhh
Confidence 222222222 45777778888888777666543
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-11 Score=109.00 Aligned_cols=138 Identities=17% Similarity=0.196 Sum_probs=86.8
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccc--------------cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
..+..+|+++|+.++|||||++.|++..... ......+.|.+.....+.+ ++..++++||||..+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~ 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHAD 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHH
Confidence 3456899999999999999999998532100 0011233454444444444 677899999999543
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhh-HHHH
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDF 160 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~-l~~~ 160 (363)
+...+......+|++++|+|+........+..+..+.. .+.. ++++++||+|+... +. .+..
T Consensus 157 -----------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~-~gi~---~iIvvvNK~Dl~~~--~~~~~~i 219 (478)
T PLN03126 157 -----------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ-VGVP---NMVVFLNKQDQVDD--EELLELV 219 (478)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEecccccCH--HHHHHHH
Confidence 22223333346799999999875666666666665443 3431 47788999998754 33 3323
Q ss_pred hccCCCchHHHHHHhc
Q 017924 161 LGHECPKPLKEILQLC 176 (363)
Q Consensus 161 ~~~~~~~~~~~~~~~~ 176 (363)
... +..++..+
T Consensus 220 ~~~-----i~~~l~~~ 230 (478)
T PLN03126 220 ELE-----VRELLSSY 230 (478)
T ss_pred HHH-----HHHHHHhc
Confidence 333 55566554
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.5e-11 Score=110.81 Aligned_cols=113 Identities=19% Similarity=0.228 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee----------C-------CcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK----------D-------GQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~----------~-------~~~~~l~DtpG~~~~ 82 (363)
..|+|+|+.|+|||||+|.|.|... .....+..|.....+...+. . -..++|+||||..+.
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v--~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAV--AAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccc--ccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 6899999999999999999987754 11222322222221111110 0 012689999996542
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
...........|++++|+|+++.+.......+..+.. .+ .|+++++||+|..
T Consensus 85 -----------~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~-~~----vpiIvviNK~D~~ 136 (586)
T PRK04004 85 -----------TNLRKRGGALADIAILVVDINEGFQPQTIEAINILKR-RK----TPFVVAANKIDRI 136 (586)
T ss_pred -----------HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH-cC----CCEEEEEECcCCc
Confidence 2222233456899999999986666666666655543 22 2899999999975
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.1e-11 Score=92.73 Aligned_cols=112 Identities=21% Similarity=0.194 Sum_probs=65.2
Q ss_pred EEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee---CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK---DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 24 lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
|+|+.|+|||||+|.|++...... ....+. ......... .+..+.++|+||..... ......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~---~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE---EYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFR-----------SLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc---ccccch-hheeeEEEEECCEEEEEEEEecCChHHHH-----------hHHHHH
Confidence 589999999999999997654211 111121 222222221 25678899999965421 111223
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHH--HHHHHHhccccccceEEEEeCCCCCCc
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAV--HRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
....+++++|++.++..+......+ ..+.... ....++++++||+|....
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKE--GENIPIILVGNKIDLPEE 117 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhc--cCCCcEEEEEeccccccc
Confidence 4577999999998733333332222 1111111 222489999999998755
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-12 Score=95.99 Aligned_cols=115 Identities=20% Similarity=0.217 Sum_probs=62.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccc--cccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFK--ASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~--~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
||+|+|..|+||||||+.|++..... ........+.. ....... ....+.++|++|....... ....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~g~~~~~~~-------~~~~- 70 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIG--VDVIVVDGDRQSLQFWDFGGQEEFYSQ-------HQFF- 70 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEE--EEEEEETTEEEEEEEEEESSSHCHHCT-------SHHH-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEE--EEEEEecCCceEEEEEecCccceeccc-------ccch-
Confidence 69999999999999999999776520 00111112222 1122221 2234779999986431110 0011
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D 148 (363)
....|++++|+|.++.-+-.. ...+.++..........|+++|.||.|
T Consensus 71 ---~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 71 ---LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp ---HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ---hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 235699999999873322222 122333444332122249999999987
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-11 Score=97.33 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=65.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe---eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+|+|+|++|||||||++.|.+... .. ..+ ++...+..+.. ..+..+.++||||... +...+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~-~~---t~~-s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-----------~~~~~ 65 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKY-RS---TVT-SIEPNVATFILNSEGKGKKFRLVDVPGHPK-----------LRDKL 65 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-CC---ccC-cEeecceEEEeecCCCCceEEEEECCCCHH-----------HHHHH
Confidence 689999999999999999986542 11 111 11111222222 1356788999999543 12222
Q ss_pred hccCCCc-cEEEEEeecCCCCCHHHHHHHHHHHHHh----ccccccceEEEEeCCCCCCc
Q 017924 98 GMAKDGI-HAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 98 ~~~~~~~-~~~l~v~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~i~v~n~~D~~~~ 152 (363)
...+... ++++||+|.. ............+..++ ......|++++.||+|+...
T Consensus 66 ~~~~~~~~~~vV~VvD~~-~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 66 LETLKNSAKGIVFVVDSA-TFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHHhccCCEEEEEEECc-cchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 2223344 9999999987 33111112122221111 10112389999999998754
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.2e-11 Score=111.88 Aligned_cols=161 Identities=17% Similarity=0.220 Sum_probs=96.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc-cc-----cc-------cCCCCCceeeEeEEEEee----CCcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA-FK-----AS-------AGSSGVTKTCEMKTTVLK----DGQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~-~~-----~~-------~~~~~~t~~~~~~~~~~~----~~~~~~l~DtpG~~~~ 82 (363)
.+|+|+|+.|+|||||++.|+.... +. .. ....++|+......+.|. .+..++||||||..+.
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 6999999999999999999864321 00 00 011234444433333331 2467899999997652
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~ 162 (363)
...+.+ +...+|++++|+|+++.........+..+.. . . .++++|+||+|+... . .+....
T Consensus 88 -------~~~v~~----sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-~--~--lpiIvViNKiDl~~a--~-~~~v~~ 148 (600)
T PRK05433 88 -------SYEVSR----SLAACEGALLVVDASQGVEAQTLANVYLALE-N--D--LEIIPVLNKIDLPAA--D-PERVKQ 148 (600)
T ss_pred -------HHHHHH----HHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-C--C--CCEEEEEECCCCCcc--c-HHHHHH
Confidence 122222 3346799999999986666555544443322 1 2 279999999998643 1 122222
Q ss_pred cCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
. +...+ +... ......|+..+.++.+|++.|...+..
T Consensus 149 e-----i~~~l---g~~~---~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 149 E-----IEDVI---GIDA---SDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred H-----HHHHh---CCCc---ceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 2 22221 1110 012356888899999999998776643
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=95.96 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=48.0
Q ss_pred cEEEEEeCCCCCCCC--CChHHHHHHHHHHHhccCC-CccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEE
Q 017924 69 QVVNVIDTPGLFDLS--AGSEFVGKEIVKCLGMAKD-GIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVF 144 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~ 144 (363)
..++|+||||+.... .....+...+...+..+.. ..+.+++|+++...+...+ ....+.+... + .++++|+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~-~----~rti~Vi 199 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ-G----ERTIGVI 199 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc-C----CcEEEEE
Confidence 467899999997431 1123334444444444444 3468899998864555444 3343333322 2 3899999
Q ss_pred eCCCCCCc
Q 017924 145 TGGDDLED 152 (363)
Q Consensus 145 n~~D~~~~ 152 (363)
||+|....
T Consensus 200 TK~D~~~~ 207 (240)
T smart00053 200 TKLDLMDE 207 (240)
T ss_pred ECCCCCCc
Confidence 99999865
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-11 Score=115.83 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=80.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccc---cccC-------------CCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFK---ASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~---~~~~-------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
=.+|+|+|+.|+|||||+|+|++..... .... ..+.|+......+.+ ++..++++||||..+.
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGHVDF 88 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCCcch
Confidence 3699999999999999999996422100 0000 234555566666677 7889999999998763
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
. .+.. .+...+|++++|+|+.......+...+..+... + .++++++||+|+...
T Consensus 89 ~-------~~~~----~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~----~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 89 T-------VEVE----RSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-E----VPRIAFVNKMDKTGA 142 (689)
T ss_pred h-------HHHH----HHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 1 1222 223456999999998766666666666654432 2 288999999998854
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-11 Score=115.30 Aligned_cols=117 Identities=21% Similarity=0.276 Sum_probs=81.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhh---ccccccccc-------------CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL---GRKAFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~---g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
=.+|+|+|+.|+|||||++.|+ |........ ...+.|.+.....+.+ .+..++|+||||+.+.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~~~f 88 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGHVDF 88 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCcHHH
Confidence 3699999999999999999996 332110000 1234565555566666 7889999999996542
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+..+. ...+|++++|+|+.......+...+..+... +. +.++++||+|....
T Consensus 89 -------~~ev~~a----l~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~~----p~iv~vNK~D~~~~ 142 (693)
T PRK00007 89 -------TIEVERS----LRVLDGAVAVFDAVGGVEPQSETVWRQADKY-KV----PRIAFVNKMDRTGA 142 (693)
T ss_pred -------HHHHHHH----HHHcCEEEEEEECCCCcchhhHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 1223332 3356899999998767777777777766553 32 78899999998865
|
|
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.8e-11 Score=92.94 Aligned_cols=156 Identities=20% Similarity=0.266 Sum_probs=89.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+|+|+|..|+|||||++.+.+.. |.... ..+...+.....+.. ++ ..+.++|++|.... ..+..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~-~~~~~-~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~--------~~~~~--- 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE-FPENY-IPTIGIDSYSKEVSI-DGKPVNLEIWDTSGQERF--------DSLRD--- 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS-TTSSS-ETTSSEEEEEEEEEE-TTEEEEEEEEEETTSGGG--------HHHHH---
T ss_pred CEEEECCCCCCHHHHHHHHHhhc-ccccc-ccccccccccccccc-cccccccccccccccccc--------ccccc---
Confidence 68999999999999999998654 22211 111112222233333 33 35789999985321 12222
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+...|+++++++.++.-+-.. ..++..+....... .+++++.||.|.........++ ...+....+
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~--~~iivvg~K~D~~~~~~v~~~~---------~~~~~~~~~ 135 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPED--IPIIVVGNKSDLSDEREVSVEE---------AQEFAKELG 135 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTT--SEEEEEEETTTGGGGSSSCHHH---------HHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccc--ccceeeeccccccccccchhhH---------HHHHHHHhC
Confidence 23457899999999873322222 23444555544422 2889999999987520011111 233444545
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
..|+ ..|++.+.++.+++..+-+.
T Consensus 136 ~~~~------e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 136 VPYF------EVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp SEEE------EEBTTTTTTHHHHHHHHHHH
T ss_pred CEEE------EEECCCCCCHHHHHHHHHHH
Confidence 3333 45677778888887765543
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.8e-11 Score=100.29 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=72.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee--EeEEEEee--------------CCcEEEEEeCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLK--------------DGQVVNVIDTPGLFDL 82 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~--------------~~~~~~l~DtpG~~~~ 82 (363)
..+|+|+|..|+|||||++.+++... .. ....|+.+ .+..+.+. ....+.|+||.|...
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g~F-~~---~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr- 95 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKGSS-IA---RPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER- 95 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCc-cc---ccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh-
Confidence 37999999999999999999986542 11 11122222 12222221 124578999999543
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhcc----------ccccceEEEEeCCCCCC
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK----------NVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~----------~~~~~~i~v~n~~D~~~ 151 (363)
+.......+.+++++|+|+|++++-+-... .++..+...... ....+++||.||+|+..
T Consensus 96 ----------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 96 ----------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred ----------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 333334456789999999999844333332 344445443210 01137899999999864
Q ss_pred c
Q 017924 152 D 152 (363)
Q Consensus 152 ~ 152 (363)
.
T Consensus 166 ~ 166 (334)
T PLN00023 166 K 166 (334)
T ss_pred c
Confidence 3
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-10 Score=86.16 Aligned_cols=119 Identities=17% Similarity=0.233 Sum_probs=78.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccc-----ccCCCC---CceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSG---VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~ 90 (363)
+.+|+|+|+.|+||||+++.++....... ..+... .|+...+......++..+++++|||..
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~---------- 79 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE---------- 79 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcH----------
Confidence 36999999999999999999985542110 111122 333344444455345899999999943
Q ss_pred HHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.+..++.....+..++++++|.+...+..+...+..+..... .|++|..||.|+...
T Consensus 80 -RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a 136 (187)
T COG2229 80 -RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDA 136 (187)
T ss_pred -HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCC
Confidence 344444445567888888888764445556666666655432 389999999998765
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-10 Score=100.44 Aligned_cols=119 Identities=22% Similarity=0.222 Sum_probs=64.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCC-CCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
...+|+|+|.+|+|||||||+|.|-..-..+... |.+.+......+...+...+++||.||++........ +...
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~----Yl~~ 109 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEE----YLKE 109 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHH----HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHH----HHHH
Confidence 3479999999999999999999874321111221 2211112222222224567889999999875443332 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCC
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~ 149 (363)
+. +...|.+|++.+ + +++..+....+.+... |+ ++.+|-||+|.
T Consensus 110 ~~--~~~yD~fiii~s-~-rf~~ndv~La~~i~~~-gK----~fyfVRTKvD~ 153 (376)
T PF05049_consen 110 VK--FYRYDFFIIISS-E-RFTENDVQLAKEIQRM-GK----KFYFVRTKVDS 153 (376)
T ss_dssp TT--GGG-SEEEEEES-S-S--HHHHHHHHHHHHT-T-----EEEEEE--HHH
T ss_pred cc--ccccCEEEEEeC-C-CCchhhHHHHHHHHHc-CC----cEEEEEecccc
Confidence 21 224577766654 3 8998888887777664 43 79999999985
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-10 Score=92.37 Aligned_cols=165 Identities=12% Similarity=0.007 Sum_probs=89.3
Q ss_pred ccEEEEEcCCCCchHHHHH-Hhhcccccccc--cCCCCCcee--eEeE-E--------EEee-CCcEEEEEeCCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGN-SILGRKAFKAS--AGSSGVTKT--CEMK-T--------TVLK-DGQVVNVIDTPGLFDLS 83 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~-~l~g~~~~~~~--~~~~~~t~~--~~~~-~--------~~~~-~~~~~~l~DtpG~~~~~ 83 (363)
..+|+|+|..|+|||||+. .+.+.. |... ......|+. ..+. . .... ....+.++||+|....
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~-~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKT-LTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCC-cccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh-
Confidence 3699999999999999995 554321 1100 011112221 0010 0 0121 1346789999996431
Q ss_pred CChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHH-
Q 017924 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF- 160 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~- 160 (363)
+. ...+.++|++++|+|++++.+-... .++..+..... . .++++|.||.|+...........
T Consensus 80 ---------~~---~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgNK~DL~~~~~~~~~~~~ 144 (195)
T cd01873 80 ---------DR---RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-R--VPVILVGCKLDLRYADLDEVNRAR 144 (195)
T ss_pred ---------hh---cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhccccccchhhhcc
Confidence 11 2356789999999999855554433 24555554432 2 28999999999753200000000
Q ss_pred ---------hccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 161 ---------LGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 161 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
...-..+....+....+..|+ ++|++++.++.++++.+-+
T Consensus 145 ~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~------E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 145 RPLARPIKNADILPPETGRAVAKELGIPYY------ETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred cccccccccCCccCHHHHHHHHHHhCCEEE------EcCCCCCCCHHHHHHHHHH
Confidence 000000112334444444333 6788889999999876643
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.7e-11 Score=109.31 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=75.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc---ccccc-----------------CCCCCceeeEeEEEEeeCCcEEEEEeCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA---FKASA-----------------GSSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~---~~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 77 (363)
.-.+|+|||+.|+|||||++.|+-... ..+.. ...+.++......+.+ ++..++++|||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDTP 88 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDTP 88 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEECC
Confidence 347999999999999999998752111 00000 0122333344445555 78899999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
|..+. ......+...+|++++|+|+...+.......++.... .+ .|+++++||+|+...
T Consensus 89 G~~df-----------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~----~PiivviNKiD~~~~ 147 (527)
T TIGR00503 89 GHEDF-----------SEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-RD----TPIFTFMNKLDRDIR 147 (527)
T ss_pred ChhhH-----------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-cC----CCEEEEEECccccCC
Confidence 97542 1222223346799999999875565555555544332 22 389999999998643
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.2e-11 Score=113.61 Aligned_cols=117 Identities=23% Similarity=0.305 Sum_probs=81.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc---cccc-------------cCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA---FKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~---~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
-++|+|+|+.++|||||++.|+.... .... ....+.|+......+.+ ++..++++||||+.+.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~f 86 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHVDF 86 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHHHH
Confidence 36899999999999999999964211 0000 01344566666666677 7889999999996541
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+ +..+...+|++++|+|+.......+...+..+... + .+.++++||+|....
T Consensus 87 -------~~e----~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~----~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 87 -------TIE----VERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-G----VPRIVFVNKMDRIGA 140 (691)
T ss_pred -------HHH----HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 122 23333466999999999767777777766665542 3 278999999999855
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.2e-11 Score=108.74 Aligned_cols=117 Identities=14% Similarity=0.197 Sum_probs=74.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhc---cccccccc-----------------CCCCCceeeEeEEEEeeCCcEEEEEeCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILG---RKAFKASA-----------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g---~~~~~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG 78 (363)
-.+|+|+|+.|+|||||++.|+. .....+.. ...+.++......+.+ ++..++++||||
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDTPG 88 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDTPG 88 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEECCC
Confidence 47999999999999999999852 11100000 0112233334444555 788899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+. ...... ++..+|++++|+|+...+.......++.... .+ .|+++++||+|....
T Consensus 89 ~~df-------~~~~~~----~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~----iPiiv~iNK~D~~~a 146 (526)
T PRK00741 89 HEDF-------SEDTYR----TLTAVDSALMVIDAAKGVEPQTRKLMEVCRL-RD----TPIFTFINKLDRDGR 146 (526)
T ss_pred chhh-------HHHHHH----HHHHCCEEEEEEecCCCCCHHHHHHHHHHHh-cC----CCEEEEEECCccccc
Confidence 7652 112222 2346799999999875665555555544332 22 289999999998754
|
|
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=84.83 Aligned_cols=157 Identities=18% Similarity=0.253 Sum_probs=98.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+.+|+|.+|+|||||+-.+... .|.. ....++-.+..+..+.. ++ ..+.|+||.| .+.+....
T Consensus 9 fkllIigDsgVGKssLl~rF~dd-tFs~-sYitTiGvDfkirTv~i-~G~~VkLqIwDtAG-----------qErFrtit 74 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADD-TFSG-SYITTIGVDFKIRTVDI-NGDRVKLQIWDTAG-----------QERFRTIT 74 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhc-cccc-ceEEEeeeeEEEEEeec-CCcEEEEEEeeccc-----------HHHHHHHH
Confidence 35679999999999999877633 3321 11112222344444544 33 3567899998 44566666
Q ss_pred hccCCCccEEEEEeecCCCCC-HHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+.+.|++++|.|+++.-+ ..-+++|+.+...+.. + +-++|.||.|.... ..++.. ..+.+....
T Consensus 75 styyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds-v--~~vLVGNK~d~~~R--rvV~t~-------dAr~~A~~m 142 (198)
T KOG0079|consen 75 STYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS-V--PKVLVGNKNDDPER--RVVDTE-------DARAFALQM 142 (198)
T ss_pred HHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc-c--cceecccCCCCccc--eeeehH-------HHHHHHHhc
Confidence 777889999999999984433 3446677777777653 2 78899999998765 322211 122222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+...+ ++|+++..++...+..|.+.+
T Consensus 143 gie~F------ETSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 143 GIELF------ETSAKENENVEAMFHCITKQV 168 (198)
T ss_pred Cchhe------ehhhhhcccchHHHHHHHHHH
Confidence 32222 567777778888777766654
|
|
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-11 Score=87.85 Aligned_cols=127 Identities=18% Similarity=0.154 Sum_probs=84.3
Q ss_pred CCCCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHH
Q 017924 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (363)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 92 (363)
.+.+..+++|+++|-.+||||||++.|.+.+..+..++.|-.+. .+.+....+++++|.-|.. .
T Consensus 11 ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k-----~v~~~g~f~LnvwDiGGqr-----------~ 74 (185)
T KOG0074|consen 11 KSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTK-----KVEYDGTFHLNVWDIGGQR-----------G 74 (185)
T ss_pred cCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceE-----EEeecCcEEEEEEecCCcc-----------c
Confidence 35567889999999999999999999999987555555554333 2333244688999999843 4
Q ss_pred HHHHHhccCCCccEEEEEeecCCC--CCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHH
Q 017924 93 IVKCLGMAKDGIHAFLVVFSVTNR--FSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (363)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~ 159 (363)
|+.++..++..+|.++||+|.++. +..-.....+++...--.. .|++|..|+-|++.. ...++
T Consensus 75 IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~--vpvlIfankQdllta--a~~ee 139 (185)
T KOG0074|consen 75 IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAE--VPVLIFANKQDLLTA--AKVEE 139 (185)
T ss_pred cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhc--cceeehhhhhHHHhh--cchHH
Confidence 667777888899999999996511 2111122222222211112 288888899888765 44443
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-11 Score=86.06 Aligned_cols=140 Identities=19% Similarity=0.263 Sum_probs=84.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|++||..|+||+||+++|-|... ....+ ..+.+ ++. ..+||||..-. ....-..+..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~----lykKT-------QAve~-~d~--~~IDTPGEy~~-------~~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT----LYKKT-------QAVEF-NDK--GDIDTPGEYFE-------HPRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh----hhccc-------ceeec-cCc--cccCCchhhhh-------hhHHHHHHHH
Confidence 4899999999999999999998875 22111 11222 111 16899995531 1223333444
Q ss_pred cCCCccEEEEEeecCCC---CCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 100 AKDGIHAFLVVFSVTNR---FSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
....++++++|..+.+. |+.+ +...+. +++|-|+||.|+.++ ..+. . .+.++...
T Consensus 61 t~~dadvi~~v~~and~~s~f~p~-------f~~~~~----k~vIgvVTK~DLaed--~dI~----~-----~~~~L~ea 118 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPPG-------FLDIGV----KKVIGVVTKADLAED--ADIS----L-----VKRWLREA 118 (148)
T ss_pred HhhccceeeeeecccCccccCCcc-------cccccc----cceEEEEecccccch--HhHH----H-----HHHHHHHc
Confidence 44578999999987633 3322 111122 268999999999865 2222 1 22334444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
|...++ ..++.+..++++|++.+...
T Consensus 119 Ga~~IF-----~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 119 GAEPIF-----ETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred CCcceE-----EEeccCcccHHHHHHHHHhh
Confidence 433332 34556678899998877653
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-10 Score=104.20 Aligned_cols=140 Identities=16% Similarity=0.223 Sum_probs=85.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc---------c--------------------ccccCCCCCceeeEeEEEEeeC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA---------F--------------------KASAGSSGVTKTCEMKTTVLKD 67 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~---------~--------------------~~~~~~~~~t~~~~~~~~~~~~ 67 (363)
.+..+|+++|+.++|||||+..|+-... + ....-..++|.+.....+.+ +
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~ 83 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-T 83 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-C
Confidence 3457999999999999999987752110 0 00011244566555555555 6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-CC------HHHHHHHHHHHHHhccccccce
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FS------QEEETAVHRLPNLFGKNVFDYM 140 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-~~------~~~~~~l~~~~~~~~~~~~~~~ 140 (363)
++.++++||||.. .+...+..+...+|++++|+|+... +. ...+..+..+. ..+-. ++
T Consensus 84 ~~~i~liDtPGh~-----------df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~-~~gi~---~i 148 (447)
T PLN00043 84 KYYCTVIDAPGHR-----------DFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAF-TLGVK---QM 148 (447)
T ss_pred CEEEEEEECCCHH-----------HHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHH-HcCCC---cE
Confidence 7899999999943 3444444455678999999998732 21 22233333322 23332 57
Q ss_pred EEEEeCCCCCCc--chhhHHHHhccCCCchHHHHHHhcC
Q 017924 141 IVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 141 i~v~n~~D~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
++++||+|.... ....+++.+.. ++.++...+
T Consensus 149 IV~vNKmD~~~~~~~~~~~~~i~~e-----i~~~l~~~g 182 (447)
T PLN00043 149 ICCCNKMDATTPKYSKARYDEIVKE-----VSSYLKKVG 182 (447)
T ss_pred EEEEEcccCCchhhhHHHHHHHHHH-----HHHHHHHcC
Confidence 889999997632 12345555555 666666544
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.3e-10 Score=91.47 Aligned_cols=111 Identities=15% Similarity=0.145 Sum_probs=71.6
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhccccccc-ccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
..+...|+|+|.+|+|||||+|.|++...... ....|+ +..... .+..++++||||.. ..+.
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~------i~i~~~-~~~~i~~vDtPg~~----------~~~l 98 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP------ITVVTG-KKRRLTFIECPNDI----------NAMI 98 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc------EEEEec-CCceEEEEeCCchH----------HHHH
Confidence 45568999999999999999999987632110 011111 111222 57788999999732 1222
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccc-eEEEEeCCCCCCc
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLED 152 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~i~v~n~~D~~~~ 152 (363)
.. ...+|++++++|+...+...+...+..+... +. + +++|+||+|....
T Consensus 99 ~~----ak~aDvVllviDa~~~~~~~~~~i~~~l~~~-g~----p~vi~VvnK~D~~~~ 148 (225)
T cd01882 99 DI----AKVADLVLLLIDASFGFEMETFEFLNILQVH-GF----PRVMGVLTHLDLFKK 148 (225)
T ss_pred HH----HHhcCEEEEEEecCcCCCHHHHHHHHHHHHc-CC----CeEEEEEeccccCCc
Confidence 22 2457999999998766666666666655442 32 4 4559999998743
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.3e-10 Score=92.43 Aligned_cols=116 Identities=19% Similarity=0.159 Sum_probs=74.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEE-EeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|||||||++.+.+... ......|+....... .... ...+.++||+|. .++...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq-----------~~~~~~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF----PEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ-----------EEYRSL 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC----cccCCCceeeeeEEEEEEeCCCEEEEEeecCCCH-----------HHHHHH
Confidence 7999999999999999999996654 211222222222211 1112 345779999994 345555
Q ss_pred HhccCCCccEEEEEeecCC--CCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 97 LGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
....+.+.++++++++... +.......++..+....+.. .+++++.||+|+...
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~ 126 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDD--VPILLVGNKIDLFDE 126 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCC--ceEEEEecccccccc
Confidence 5566778999999998862 22233334454555554322 389999999999865
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.1e-10 Score=97.03 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=78.1
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccc--c-----------ccCCCC---CceeeEeE----EEEeeCC----cEE
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK--A-----------SAGSSG---VTKTCEMK----TTVLKDG----QVV 71 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~--~-----------~~~~~~---~t~~~~~~----~~~~~~~----~~~ 71 (363)
++....|+|||+.++|||||||.+.++.... . -++++. +++....+ .+..... ..+
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 4567899999999999999999999882111 1 122222 23332222 2222222 578
Q ss_pred EEEeCCCCCCCCCChHHHHHH----------------------HHHHHhccCCCccEEEEEe-ecC------CCCCHHHH
Q 017924 72 NVIDTPGLFDLSAGSEFVGKE----------------------IVKCLGMAKDGIHAFLVVF-SVT------NRFSQEEE 122 (363)
Q Consensus 72 ~l~DtpG~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~l~v~-~~~------~~~~~~~~ 122 (363)
.++||+|+.+.+...+.-... ..+.+ ....+..++|. |.+ ..+...+.
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI---~dhstIgivVtTDgsi~dI~Re~y~~aEe 170 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVI---QEHSTIGVVVTTDGTITDIPREDYVEAEE 170 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHH---HhcCcEEEEEEcCCCccccccccchHHHH
Confidence 899999998754322210111 11111 12557777777 553 35667778
Q ss_pred HHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 123 TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
++++.++.. + +|+++|+|+.|-...
T Consensus 171 ~~i~eLk~~-~----kPfiivlN~~dp~~~ 195 (492)
T TIGR02836 171 RVIEELKEL-N----KPFIILLNSTHPYHP 195 (492)
T ss_pred HHHHHHHhc-C----CCEEEEEECcCCCCc
Confidence 888887764 3 289999999995433
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=95.48 Aligned_cols=93 Identities=19% Similarity=0.316 Sum_probs=59.1
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
......+|++||.+++|||||+|.|+|... .......|+-..+..+...++-.+.++|+||+........--++++.
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~s---eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vl 135 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTKS---EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVL 135 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCCc---cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceee
Confidence 334557999999999999999999998763 23344444433333333337889999999998653222211112222
Q ss_pred HHHhccCCCccEEEEEeecC
Q 017924 95 KCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~ 114 (363)
...+.+|.+++|+|+.
T Consensus 136 ----sv~R~ADlIiiVld~~ 151 (365)
T COG1163 136 ----SVARNADLIIIVLDVF 151 (365)
T ss_pred ----eeeccCCEEEEEEecC
Confidence 2334667788777764
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.5e-10 Score=100.52 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017924 272 KETTTRLEQQLAKEQAARLRAEEVAQLAE 300 (363)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (363)
+++..+++.+..++...+++++.++++..
T Consensus 473 eqkA~e~~kk~~ke~ta~qe~qael~k~e 501 (1102)
T KOG1924|consen 473 EQKAAELEKKFDKELTARQEAQAELQKHE 501 (1102)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 33445566666666666666666665544
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-09 Score=92.53 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=64.4
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHH-HHHHhccccccceEEEEeC
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHR-LPNLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~i~v~n~ 146 (363)
+..+.|+||+|+.... .. + ...+|.++++.+.. ++.+...+.. +.+. .-++|+||
T Consensus 148 g~d~viieT~Gv~qs~---~~----i-------~~~aD~vlvv~~p~---~gd~iq~~k~gi~E~-------aDIiVVNK 203 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TA----V-------AGMVDFFLLLQLPG---AGDELQGIKKGIMEL-------ADLIVINK 203 (332)
T ss_pred CCCEEEEECCCCccch---hH----H-------HHhCCEEEEEecCC---chHHHHHHHhhhhhh-------hheEEeeh
Confidence 4567899999988521 11 1 12368888887522 2334333222 2222 24789999
Q ss_pred CCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEe-cCCCcccccchhHHHHHHHHHHHHHH
Q 017924 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 147 ~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+|+... ......... +...+.........+ ..+...|+.++.++++|++.|.....
T Consensus 204 aDl~~~--~~a~~~~~e-----l~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 204 ADGDNK--TAARRAAAE-----YRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred hcccch--hHHHHHHHH-----HHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 998865 333444443 444443322111111 23346788889999999999998776
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-08 Score=92.95 Aligned_cols=128 Identities=23% Similarity=0.335 Sum_probs=83.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE----------------------------------------
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE---------------------------------------- 59 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~---------------------------------------- 59 (363)
-+|+|+|.+++||||++|+++-+....++.. .++.|.
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~g---h~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIG---HTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHhhCccccc---ccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 5999999999999999999975443222111 111100
Q ss_pred ----eEEEEeeCC------cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHH
Q 017924 60 ----MKTTVLKDG------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP 129 (363)
Q Consensus 60 ----~~~~~~~~~------~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~ 129 (363)
...+.|.++ ..+.++|.||++-. .+...++......+|+++||..+.+.++..++..+....
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~--------se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs 258 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVD--------SELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVS 258 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCc--------hhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhh
Confidence 112233222 24679999998753 344455555556889999999998888888888877665
Q ss_pred HHhccccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 130 NLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 130 ~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
.. + .+++|+.||||......+-.++++++
T Consensus 259 ~~--K---pniFIlnnkwDasase~ec~e~V~~Q 287 (749)
T KOG0448|consen 259 EE--K---PNIFILNNKWDASASEPECKEDVLKQ 287 (749)
T ss_pred cc--C---CcEEEEechhhhhcccHHHHHHHHHH
Confidence 53 2 27888899999876533444444443
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-10 Score=85.04 Aligned_cols=157 Identities=19% Similarity=0.218 Sum_probs=98.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee--eEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+++|..-+|||||+=..+ .+.|+..... |.. .....+... ..-.+.+|||.|. +.+...
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~-EnkFn~kHls---TlQASF~~kk~n~ed~ra~L~IWDTAGQ-----------ErfHAL 78 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYV-ENKFNCKHLS---TLQASFQNKKVNVEDCRADLHIWDTAGQ-----------ERFHAL 78 (218)
T ss_pred eEEEEEcCCccchhHHHHHHH-HhhcchhhHH---HHHHHHhhcccccccceeeeeeeeccch-----------Hhhhcc
Confidence 599999999999999986665 4444322110 000 000011110 1235679999993 334444
Q ss_pred HhccCCCccEEEEEeecCCCCC-HHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
-..++++.++.++|+|++++-+ ...+.++..++..+|.++ .++||.||+|+...-....++ .....+.
T Consensus 79 GPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEeeR~Vt~qe---------Ae~YAes 147 (218)
T KOG0088|consen 79 GPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEERQVTRQE---------AEAYAES 147 (218)
T ss_pred CceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHhhhhhHHH---------HHHHHHh
Confidence 4566788999999999985544 334667888888888775 788899999986541111111 2233444
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..|+ .+|++...++.+|++.+-..+
T Consensus 148 vGA~y~------eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 148 VGALYM------ETSAKDNVGISELFESLTAKM 174 (218)
T ss_pred hchhhe------ecccccccCHHHHHHHHHHHH
Confidence 455554 567888889999998776543
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-10 Score=109.42 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=78.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccccc---cccc-------------CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAF---KASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~---~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
.-.+|+|+|+.|+|||||++.|+..... .... .....|+......+.+ .+..++++||||..+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcHH
Confidence 3479999999999999999999743210 0000 0133445455555666 788999999999754
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
. ......+...+|++++|+|++..........+..+... + .|+++++||+|....
T Consensus 86 f-----------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-~----~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 F-----------TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-G----IPRLIFINKMDRVGA 140 (687)
T ss_pred H-----------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-C----CCEEEEEECCCCCCC
Confidence 2 11222233467999999999866666666666554432 2 289999999998754
|
|
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.5e-10 Score=80.46 Aligned_cols=158 Identities=16% Similarity=0.170 Sum_probs=93.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
++.|+|...+|||||+-.-++... .+ ....++.++-.+..+.-. ....+.++||.|... +......
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSF-t~-afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr-----------yrtiTTa 89 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSF-TS-AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER-----------YRTITTA 89 (193)
T ss_pred eEEEEccCCccchhhhHHhhcccc-cc-ceeeeeeeeEEEeEeeecccEEEEEEEecccchh-----------hhHHHHH
Confidence 899999999999999999886653 11 111222223333332221 123567999998543 3333445
Q ss_pred cCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.+++++++|+++|.++.-+-.. ..+.-.++..+-.++ ++|++.||||+.+. ..+- . +.-..++..+|-
T Consensus 90 yyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~na--qvilvgnKCDmd~e--Rvis----~---e~g~~l~~~LGf 158 (193)
T KOG0093|consen 90 YYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNA--QVILVGNKCDMDSE--RVIS----H---ERGRQLADQLGF 158 (193)
T ss_pred HhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCc--eEEEEecccCCccc--eeee----H---HHHHHHHHHhCh
Confidence 5678999999999883333222 334444444433333 89999999998765 2211 0 112334445454
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.++ +.|++.+-++..+++.+-..+
T Consensus 159 efF------EtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 159 EFF------ETSAKENINVKQVFERLVDII 182 (193)
T ss_pred HHh------hhcccccccHHHHHHHHHHHH
Confidence 333 556777778888777665554
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-09 Score=93.48 Aligned_cols=142 Identities=20% Similarity=0.306 Sum_probs=93.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhh---c------------------ccccc--------cccCCCCCceeeEeEEEEeeC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSIL---G------------------RKAFK--------ASAGSSGVTKTCEMKTTVLKD 67 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~---g------------------~~~~~--------~~~~~~~~t~~~~~~~~~~~~ 67 (363)
.+..+++++|+..+|||||+-.|+ | ...|. ...-..++|++.....+.. +
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~ 83 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-D 83 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-C
Confidence 456899999999999999997664 1 11110 0011244565555555555 6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-------CCHHHHHHHHHHHHHhccccccce
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYM 140 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~ 140 (363)
.+.++++|+||..| +..-+......+|+.++|+++... ..+..+.. ..+....|-+ .+
T Consensus 84 k~~~tIiDaPGHrd-----------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~tlGi~---~l 148 (428)
T COG5256 84 KYNFTIIDAPGHRD-----------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLARTLGIK---QL 148 (428)
T ss_pred CceEEEeeCCchHH-----------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHhcCCc---eE
Confidence 77899999999443 333333455678999999998733 22333333 3344445543 79
Q ss_pred EEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 141 i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
|+++||+|..+.+...+++.... +..++..++-.
T Consensus 149 IVavNKMD~v~wde~rf~ei~~~-----v~~l~k~~G~~ 182 (428)
T COG5256 149 IVAVNKMDLVSWDEERFEEIVSE-----VSKLLKMVGYN 182 (428)
T ss_pred EEEEEcccccccCHHHHHHHHHH-----HHHHHHHcCCC
Confidence 99999999998777788888777 77777676643
|
|
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-10 Score=86.84 Aligned_cols=163 Identities=13% Similarity=0.082 Sum_probs=97.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+.+|+++|-.||||||++..|.-...+.. ..|+...+..+.+ .+..++++|.-|... ++..
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~y-kn~~f~vWDvGGq~k-----------~R~l 77 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVEY-KNISFTVWDVGGQEK-----------LRPL 77 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEEE-cceEEEEEecCCCcc-----------cccc
Confidence 4568999999999999999987754443221 3344555556666 688899999999643 3334
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
+..++...+++|||+|.+++..-.+ +..+..+...-. -...+++++.||.|.... -...++-+. +. +-..
T Consensus 78 W~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~-l~~~~llv~aNKqD~~~a--ls~~ei~~~-----L~-l~~l 148 (181)
T KOG0070|consen 78 WKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE-LRNAPLLVFANKQDLPGA--LSAAEITNK-----LG-LHSL 148 (181)
T ss_pred hhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc-cCCceEEEEechhhcccc--CCHHHHHhH-----hh-hhcc
Confidence 4456678899999999873322222 222222221110 012278888999998755 333322222 11 2222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+....++ ..+.+..+.++.+-++.+...+.
T Consensus 149 ~~~~w~i----q~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 149 RSRNWHI----QSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred CCCCcEE----eeccccccccHHHHHHHHHHHHh
Confidence 2222332 23455667888888888877664
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-10 Score=111.53 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=77.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccC--------------CCCCceeeEeEEEEee---------CCcEEEE
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVLK---------DGQVVNV 73 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~---------~~~~~~l 73 (363)
..-.+|+|+|+.++|||||+++|++......... ..+.|.........+. .++.+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 3446999999999999999999985432111011 1222222222233331 1567899
Q ss_pred EeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 74 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
+||||..+. ...+..+...+|++++|+|+...+.......++.+... + .|+++++||+|..
T Consensus 97 iDtPG~~~f-----------~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-~----~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDF-----------SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-R----IRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhH-----------HHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-C----CCEEEEEEChhhh
Confidence 999997652 22233344578999999998867777777777666543 2 2899999999987
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5e-10 Score=98.20 Aligned_cols=131 Identities=19% Similarity=0.203 Sum_probs=84.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+..+++|+|-+++|||||+|.++..+. ...+...|+...+..........+.++||||+.+.-..+..+.+. ...
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEm-qsI- 241 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEM-QII- 241 (620)
T ss_pred CcCeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHH-HHH-
Confidence 457999999999999999999985543 234445555444333322245577799999998864333322221 111
Q ss_pred hccCCCccEEEEEeecC--CCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHH
Q 017924 98 GMAKDGIHAFLVVFSVT--NRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE 158 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~--~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~ 158 (363)
....+--.+++|++|++ ...+..+ ...+..++.+|... ++|+|+||+|.... +.|.
T Consensus 242 TALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK---~~IlvlNK~D~m~~--edL~ 300 (620)
T KOG1490|consen 242 TALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK---VTILVLNKIDAMRP--EDLD 300 (620)
T ss_pred HHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC---ceEEEeecccccCc--cccC
Confidence 11112236789999987 4455444 45667777777654 79999999999977 4444
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-11 Score=112.59 Aligned_cols=128 Identities=16% Similarity=0.084 Sum_probs=73.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee--EeEEEEeeCCcEE----EEEeCCCCCCCCCChHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLKDGQVV----NVIDTPGLFDLSAGSEFVGK 91 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~----~l~DtpG~~~~~~~~~~~~~ 91 (363)
.+-+|+|||+||+|||||++.|+|... +..|.+.... .+.++.+ +...+ +++|...-...... ..
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~----~~~G~v~~g~~v~igyf~Q-~~~~l~~~~t~~d~l~~~~~~~~----e~ 417 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELG----PLSGTVKVGETVKIGYFDQ-HRDELDPDKTVLEELSEGFPDGD----EQ 417 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcc----cCCceEEeCCceEEEEEEe-hhhhcCccCcHHHHHHhhCcccc----HH
Confidence 567999999999999999999988776 3344333322 2333322 11111 12222111110001 23
Q ss_pred HHHHHHhccC-CCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcchhhHHHHhcc
Q 017924 92 EIVKCLGMAK-DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 92 ~~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~~~l~~~~~~ 163 (363)
.++.++..+. .+.++ .-.+. .+|++++.++.+.+.++... |++|+ +||+|..+. +.|++.+..
T Consensus 418 ~~r~~L~~f~F~~~~~---~~~v~-~LSGGEk~Rl~La~ll~~~p---NvLiLDEPTNhLDi~s~--~aLe~aL~~ 484 (530)
T COG0488 418 EVRAYLGRFGFTGEDQ---EKPVG-VLSGGEKARLLLAKLLLQPP---NLLLLDEPTNHLDIESL--EALEEALLD 484 (530)
T ss_pred HHHHHHHHcCCChHHH---hCchh-hcCHhHHHHHHHHHHhccCC---CEEEEcCCCccCCHHHH--HHHHHHHHh
Confidence 3444433222 12222 12233 78899999998888877654 78887 899998766 666666554
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.8e-10 Score=108.46 Aligned_cols=117 Identities=18% Similarity=0.215 Sum_probs=75.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccc--------------cCCCCCceeeEeEEEEee---------------CC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AGSSGVTKTCEMKTTVLK---------------DG 68 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------------~~ 68 (363)
.=++|+|+|+.|+|||||+++|+........ ....+.|.......+.+. ++
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 3469999999999999999998743311000 011222333322233331 25
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCC
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D 148 (363)
..++++||||..+ +...+..+...+|++++|+|+...+....+..++.+... + .++++++||+|
T Consensus 98 ~~inliDtPGh~d-----------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-~----~p~i~~iNK~D 161 (843)
T PLN00116 98 YLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-R----IRPVLTVNKMD 161 (843)
T ss_pred eEEEEECCCCHHH-----------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC-C----CCEEEEEECCc
Confidence 6789999999655 222223333567999999998867777777766665442 2 27899999999
Q ss_pred CC
Q 017924 149 DL 150 (363)
Q Consensus 149 ~~ 150 (363)
..
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 87
|
|
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.9e-09 Score=76.22 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=88.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+++|+|+.|.|||.|+..+. ...|.... +.++-++..-..+.+. ....+.+|||.| .+.++....
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fi-e~kfkDds-sHTiGveFgSrIinVGgK~vKLQIWDTAG-----------QErFRSVtR 76 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFI-ENKFKDDS-SHTIGVEFGSRIVNVGGKTVKLQIWDTAG-----------QERFRSVTR 76 (214)
T ss_pred heeEEeccCCCChhHHHHHHH-Hhhhcccc-cceeeeeecceeeeecCcEEEEEEeeccc-----------HHHHHHHHH
Confidence 489999999999999998887 33443322 2222222222222221 234667999999 345666566
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHH-HHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
.+++++.+.++|.|++++-+-+... +|.-++.+....+ -++++.||.|+...-..... +..+.+.
T Consensus 77 sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nI--vviL~GnKkDL~~~R~Vtfl------------EAs~Faq 142 (214)
T KOG0086|consen 77 SYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNI--VVILCGNKKDLDPEREVTFL------------EASRFAQ 142 (214)
T ss_pred HHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcE--EEEEeCChhhcChhhhhhHH------------HHHhhhc
Confidence 6778899999999998555544433 4444444433321 33445688887644111111 1111111
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
...+.| ..+|+.+++++.+.+-.....
T Consensus 143 Enel~f---lETSa~TGeNVEEaFl~c~~t 169 (214)
T KOG0086|consen 143 ENELMF---LETSALTGENVEEAFLKCART 169 (214)
T ss_pred ccceee---eeecccccccHHHHHHHHHHH
Confidence 122222 256778888888866554443
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-09 Score=89.07 Aligned_cols=123 Identities=16% Similarity=0.152 Sum_probs=69.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
||+++|+.|+||||..+.|.+...- .....-+.|.+.....+.......+.+||.||..+..... +.......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p-~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~------~~~~~~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP-RDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY------FNSQREEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G-GGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT------HTCCHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc-hhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc------ccccHHHH
Confidence 6999999999999999999865431 1122223455555555554356689999999987643210 00001112
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHHH-HHHHHh--ccccccceEEEEeCCCCCCc
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLF--GKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~-~~~~~~--~~~~~~~~i~v~n~~D~~~~ 152 (363)
+.+++++|||+|+...--..+...+. .+..+. ..++ ++.+++.|+|++.+
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~--~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNI--KVFVFIHKMDLLSE 126 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT---EEEEEEE-CCCS-H
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCC--eEEEEEeecccCCH
Confidence 35789999999997222333433333 233322 2233 78888999999876
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-09 Score=95.57 Aligned_cols=163 Identities=20% Similarity=0.263 Sum_probs=107.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccccccc-------------ccCCCCCceeeEeEEEEeeC--CcEEEEEeCCCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA-------------SAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFD 81 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~-------------~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~ 81 (363)
+.=.+++||.+...|||||.+.|+....+.. -.-..++|+..+.....+.+ .+.+++|||||..|
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 4456899999999999999998753221100 01236688888877776632 37889999999888
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHh
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~ 161 (363)
+.. +..+.+ .-++++++|+|+.+..-......+.+..+. + ..+|.|+||+|+-..+-+..+
T Consensus 138 Fs~-------EVsRsl----aac~G~lLvVDA~qGvqAQT~anf~lAfe~-~----L~iIpVlNKIDlp~adpe~V~--- 198 (650)
T KOG0462|consen 138 FSG-------EVSRSL----AACDGALLVVDASQGVQAQTVANFYLAFEA-G----LAIIPVLNKIDLPSADPERVE--- 198 (650)
T ss_pred ccc-------eehehh----hhcCceEEEEEcCcCchHHHHHHHHHHHHc-C----CeEEEeeeccCCCCCCHHHHH---
Confidence 532 333333 346899999999866655555554443332 2 258889999999765333333
Q ss_pred ccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.. +.+++..+....+ ..|++.+.++.++++.|-+-+.
T Consensus 199 ~q-----~~~lF~~~~~~~i------~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 199 NQ-----LFELFDIPPAEVI------YVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred HH-----HHHHhcCCccceE------EEEeccCccHHHHHHHHHhhCC
Confidence 33 4445555544333 4578889999999888776654
|
|
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-09 Score=79.01 Aligned_cols=161 Identities=19% Similarity=0.157 Sum_probs=94.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.++.|||.+-+|||||++.++.-. |.. .+.-++-++-.-..+....+. .+.++||.|. +.++...
T Consensus 9 frlivigdstvgkssll~~ft~gk-fae-lsdptvgvdffarlie~~pg~riklqlwdtagq-----------erfrsit 75 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGK-FAE-LSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ-----------ERFRSIT 75 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCc-ccc-cCCCccchHHHHHHHhcCCCcEEEEEEeeccch-----------HHHHHHH
Confidence 488999999999999999998333 221 222222221111112222333 5679999993 3455555
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+++.-++++|+|++++-+-+. ..+++......+....--+++|.+|+|+.+.-....++ .. .+...
T Consensus 76 ksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EE---------aE-klAa~ 145 (213)
T KOG0091|consen 76 KSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEE---------AE-KLAAS 145 (213)
T ss_pred HHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHH---------HH-HHHHh
Confidence 556667788899999987766444 45666666655522111234567899987541111111 12 22333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
++..++ ++|++.+.++++..+.|..-+
T Consensus 146 hgM~FV-----ETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 146 HGMAFV-----ETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred cCceEE-----EecccCCCcHHHHHHHHHHHH
Confidence 444444 678888889998887665543
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.6e-10 Score=108.39 Aligned_cols=117 Identities=18% Similarity=0.299 Sum_probs=72.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc--------------ccccccCCCCCceeeEeEE----EEeeCCcEEEEEeCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK--------------AFKASAGSSGVTKTCEMKT----TVLKDGQVVNVIDTPGLF 80 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~--------------~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~l~DtpG~~ 80 (363)
-++|+|||+.|+|||||++.|+... .|.........|+...... +.+ ++..++++||||..
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTPG~~ 97 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTPGHV 97 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCCCcc
Confidence 4799999999999999999886321 1111011122233222211 223 56789999999987
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
+.. ..... +...+|++++|+|+...+.......++.+... + .+.++++||+|....
T Consensus 98 ~f~-------~~~~~----al~~aD~~llVvda~~g~~~~t~~~~~~~~~~-~----~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 98 DFG-------GDVTR----AMRAVDGAIVVVCAVEGVMPQTETVLRQALKE-N----VKPVLFINKVDRLIN 153 (720)
T ss_pred ccH-------HHHHH----HHHhcCEEEEEEecCCCCCccHHHHHHHHHHc-C----CCEEEEEEChhcccc
Confidence 632 12222 33467999999998755555555555544321 2 267899999998643
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=82.47 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=100.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc--cccc-cCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA--FKAS-AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~--~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....|+|+|.-+||||||+.++--... |..- ++....|+...+..... .+..+.+||.-|- +.+.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQ-----------e~lr 83 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQ-----------ESLR 83 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCCh-----------HHHH
Confidence 347899999999999999988742211 1110 11122233333334444 5678889999882 3344
Q ss_pred HHHhccCCCccEEEEEeecCC--CCCHHHHHHHHHHHH---HhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPN---LFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPL 169 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~---~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~ 169 (363)
......+..+|+++|++|+++ ++. .....++.+.. +.|- |++++.||-|.... ....+.-.. +
T Consensus 84 Slw~~yY~~~H~ii~viDa~~~eR~~-~~~t~~~~v~~~E~leg~----p~L~lankqd~q~~--~~~~El~~~-----~ 151 (197)
T KOG0076|consen 84 SLWKKYYWLAHGIIYVIDATDRERFE-ESKTAFEKVVENEKLEGA----PVLVLANKQDLQNA--MEAAELDGV-----F 151 (197)
T ss_pred HHHHHHHHHhceeEEeecCCCHHHHH-HHHHHHHHHHHHHHhcCC----chhhhcchhhhhhh--hhHHHHHHH-----h
Confidence 444455667899999999873 222 22222333222 2222 89999999998755 444433332 3
Q ss_pred HHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
.. .+..+.+.+.|. +.|+..+.++++-+.++...+..+
T Consensus 152 ~~-~e~~~~rd~~~~---pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 152 GL-AELIPRRDNPFQ---PVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hh-hhhcCCccCccc---cchhhhcccHHHHHHHHHHHHhhc
Confidence 32 445556666555 457788899999888877766553
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5e-09 Score=91.13 Aligned_cols=159 Identities=20% Similarity=0.256 Sum_probs=113.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccc-cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.|+.+|+--.|||||+++++|...-. ......+.|++..+++... .+..+.|+|.||..+ +...+..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~-----------~i~~mia 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPD-----------FISNLLA 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHH-----------HHHHHHh
Confidence 58889999999999999999875311 1233456788888888777 566899999999554 3333434
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
.....|..++|+++++.+.......+..+. ++|.. +.++|+||+|.... ..+++..++ ++....
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLd-llgi~---~giivltk~D~~d~--~r~e~~i~~--------Il~~l~-- 133 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILD-LLGIK---NGIIVLTKADRVDE--ARIEQKIKQ--------ILADLS-- 133 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHH-hcCCC---ceEEEEeccccccH--HHHHHHHHH--------HHhhcc--
Confidence 455789999999997688777777665544 45654 78999999999876 555555554 222222
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+.-......|+..+.++.+|.+.|..+.
T Consensus 134 -l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 134 -LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred -cccccccccccccCCCHHHHHHHHHHhh
Confidence 1222334678888999999999988887
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-09 Score=86.64 Aligned_cols=131 Identities=17% Similarity=0.142 Sum_probs=67.6
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHH---HHhccccccceEEEEeC
Q 017924 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP---NLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 70 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~i~v~n~ 146 (363)
...+|||||....-.++-. +.-|...+... .+-+++|++|.. +-+...-..-.++- .++..+ .|+|+++||
T Consensus 117 ~~~liDTPGQIE~FtWSAs-GsIIte~lass--~ptvv~YvvDt~-rs~~p~tFMSNMlYAcSilyktk--lp~ivvfNK 190 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSAS-GSIITETLASS--FPTVVVYVVDTP-RSTSPTTFMSNMLYACSILYKTK--LPFIVVFNK 190 (366)
T ss_pred CEEEEcCCCceEEEEecCC-ccchHhhHhhc--CCeEEEEEecCC-cCCCchhHHHHHHHHHHHHHhcc--CCeEEEEec
Confidence 3579999996532111100 11223333222 457888999875 33322222222221 122223 399999999
Q ss_pred CCCCCcchhhHHHHhccCCCchHHHHHHhcCCce---------------EEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC---------------VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 147 ~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.|.... ..+.+|+.. +.. +++.+......| +.--.....|+..+.+..+++..|+..+.+
T Consensus 191 ~Dv~d~--~fa~eWm~D-fE~-FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 191 TDVSDS--EFALEWMTD-FEA-FQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred cccccc--HHHHHHHHH-HHH-HHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 999877 555555543 111 222222111111 000112345677788889998888888776
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.6e-10 Score=88.49 Aligned_cols=120 Identities=16% Similarity=0.232 Sum_probs=62.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEE-EeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...|+|+|++|+|||+|+..|..... . .+..+. ....... ....+..+.+||+||..... ..+...+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~-~--~T~tS~--e~n~~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~ 70 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKT-V--PTVTSM--ENNIAYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDEL 70 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS------B---S--SEEEECCGSSTCGTCECEEEETT-HCCC-------HHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCc-C--Ceeccc--cCCceEEeecCCCCEEEEEECCCcHHHH-------HHHHHhh
Confidence 35899999999999999999875432 1 111111 1111111 11135678899999976532 1222221
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHh----ccccccceEEEEeCCCCCCc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~i~v~n~~D~~~~ 152 (363)
. ....+.+|+||+|.+ .+..+-...-+.+..++ -.....|++|+.||.|+...
T Consensus 71 ~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 71 K-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp H-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred h-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 1 123578999999976 33322223323332222 11223489999999998764
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-09 Score=90.70 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=55.2
Q ss_pred EEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC----------------cEEEEEeCCCCCCCCCC
Q 017924 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~~~~ 85 (363)
|+|||.+++|||||+|+|+|... ..... ..+|+......+.+.+. ..+.++|+||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~-pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANY-PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccc-cccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 68999999999999999998875 21111 22333444333333221 14889999999864332
Q ss_pred hHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
...++..+... ...+|++++|+++.
T Consensus 79 ~~glg~~fL~~----i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSH----IREVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHH----HHhCCEEEEEEeCc
Confidence 33344444433 34679999999863
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-09 Score=93.49 Aligned_cols=91 Identities=16% Similarity=0.182 Sum_probs=58.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeC----------------CcEEEEEeCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKD----------------GQVVNVIDTPGL 79 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~----------------~~~~~l~DtpG~ 79 (363)
....+|+|||.+|+|||||+|+|++... . ....+ +|.+.....+.+.+ ...+.++||||+
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~--v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-P--AENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcc-c--ccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 4557999999999999999999998764 1 22222 23344443333311 224789999999
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
.........+...+... ...+|++++|+++.
T Consensus 96 v~ga~~g~gLg~~fL~~----Ir~aD~il~VVd~f 126 (390)
T PTZ00258 96 VKGASEGEGLGNAFLSH----IRAVDGIYHVVRAF 126 (390)
T ss_pred CcCCcchhHHHHHHHHH----HHHCCEEEEEEeCC
Confidence 85332223344444433 35679999999974
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.9e-09 Score=91.96 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=56.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeCC----------------cEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~ 82 (363)
.+|+|||.+|+|||||+|+|+|... . ....+ +|+......+.+.+. ..+.++|+||+...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~--v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~ 79 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-E--AANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG 79 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-e--ecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence 6899999999999999999998763 1 22222 233443333333121 24789999999763
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
......++..+.. ....+|++++|+++.
T Consensus 80 a~~g~glg~~fL~----~i~~aD~li~VVd~f 107 (364)
T PRK09601 80 ASKGEGLGNQFLA----NIREVDAIVHVVRCF 107 (364)
T ss_pred CChHHHHHHHHHH----HHHhCCEEEEEEeCC
Confidence 3222233434433 335789999999974
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.7e-09 Score=87.97 Aligned_cols=161 Identities=17% Similarity=0.127 Sum_probs=97.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|||-+|||||||||+|++...+.-.-- -.|.+..........+..+.+.||.||...- + ..+...|...+.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drL--FATLDpT~h~a~Lpsg~~vlltDTvGFisdL-P-~~LvaAF~ATLe 253 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRL--FATLDPTLHSAHLPSGNFVLLTDTVGFISDL-P-IQLVAAFQATLE 253 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchh--heeccchhhhccCCCCcEEEEeechhhhhhC-c-HHHHHHHHHHHH
Confidence 37999999999999999999997665332211 1233333333444467788899999987521 1 222333433332
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc---ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK---NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.. ...|.++.|.|+++......+..+.....-+|- ..+.+++=|-||.|.... +...
T Consensus 254 eV-aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~-------~~e~------------ 313 (410)
T KOG0410|consen 254 EV-AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED-------EVEE------------ 313 (410)
T ss_pred HH-hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc-------cCcc------------
Confidence 22 367999999999977776666555444443332 112234445567665543 1111
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.-++....|+..+.+..++++.++..+.
T Consensus 314 ------E~n~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 314 ------EKNLDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ------ccCCccccccccCccHHHHHHHHHHHhh
Confidence 0111234577788899999988877654
|
|
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-08 Score=81.91 Aligned_cols=160 Identities=23% Similarity=0.213 Sum_probs=91.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE-EEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
..+|+++|..|+|||+|.-.+.+... .. ....|+...+.. ... ++ ..+.|+||.|.... ..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f-~~---~y~ptied~y~k~~~v-~~~~~~l~ilDt~g~~~~-----------~~ 66 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF-VE---DYDPTIEDSYRKELTV-DGEVCMLEILDTAGQEEF-----------SA 66 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc-cc---ccCCCccccceEEEEE-CCEEEEEEEEcCCCcccC-----------hH
Confidence 36999999999999999977764432 22 122333332222 222 33 35679999994331 22
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHH-HHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+....|++++|++++++-+-.+.. ..+.+....+. ...|+++|.||+|+...-....++ -..+..
T Consensus 67 ~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~~R~V~~ee---------g~~la~ 136 (196)
T KOG0395|consen 67 MRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLERERQVSEEE---------GKALAR 136 (196)
T ss_pred HHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchhccccCHHH---------HHHHHH
Confidence 2222334669999999998555544433 33344232222 224899999999987530011111 122233
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.++..++ +.|++...++.+++..+...+..
T Consensus 137 ~~~~~f~------E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 137 SWGCAFI------ETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred hcCCcEE------EeeccCCcCHHHHHHHHHHHHHh
Confidence 3333333 45666667888888877666543
|
|
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-09 Score=78.13 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=89.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+..+.++|--++|||||+|.++.... .- .-..|+....+.+.. ....+.++|.+|.. .+...+.
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~-~e---dmiptvGfnmrk~tk-gnvtiklwD~gGq~-----------rfrsmWe 83 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQY-LE---DMIPTVGFNMRKVTK-GNVTIKLWDLGGQP-----------RFRSMWE 83 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccc-hh---hhcccccceeEEecc-CceEEEEEecCCCc-----------cHHHHHH
Confidence 46889999999999999998873221 11 111233334444443 45677899999944 3555556
Q ss_pred ccCCCccEEEEEeecCC--CCCHHHHHHHHHHHHHhccc--cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 99 MAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.+.+++++++|++|+.+ .++.. +.. +..++.+. ...|++++.||.|.... -.-.+.+.+ +. +..
T Consensus 84 rycR~v~aivY~VDaad~~k~~~s-r~E---L~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~r-----mg-L~s 151 (186)
T KOG0075|consen 84 RYCRGVSAIVYVVDAADPDKLEAS-RSE---LHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIER-----MG-LSS 151 (186)
T ss_pred HHhhcCcEEEEEeecCCcccchhh-HHH---HHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHH-----hC-ccc
Confidence 66788999999999872 33322 222 22222222 12389999999998754 111122221 10 111
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
......+-| ..|.++..+++.+++++-+
T Consensus 152 itdREvcC~----siScke~~Nid~~~~Wli~ 179 (186)
T KOG0075|consen 152 ITDREVCCF----SISCKEKVNIDITLDWLIE 179 (186)
T ss_pred cccceEEEE----EEEEcCCccHHHHHHHHHH
Confidence 112222222 3455666778877776654
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.9e-09 Score=99.01 Aligned_cols=118 Identities=23% Similarity=0.285 Sum_probs=85.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhh---cccccccc-------------cCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL---GRKAFKAS-------------AGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLF 80 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~---g~~~~~~~-------------~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~ 80 (363)
.-++|+|+|+.++|||||...|+ |.....+. ...+++|+........| . ++.+++|||||.-
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPGHV 87 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPGHV 87 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCCcc
Confidence 34799999999999999998874 22111111 11255666677777788 6 4999999999988
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
|+ ..++.+.+ .-.|+.++|+|+...........++++.+. .+ |.++++||+|....
T Consensus 88 DF-------t~EV~rsl----rvlDgavvVvdaveGV~~QTEtv~rqa~~~---~v--p~i~fiNKmDR~~a 143 (697)
T COG0480 88 DF-------TIEVERSL----RVLDGAVVVVDAVEGVEPQTETVWRQADKY---GV--PRILFVNKMDRLGA 143 (697)
T ss_pred cc-------HHHHHHHH----HhhcceEEEEECCCCeeecHHHHHHHHhhc---CC--CeEEEEECcccccc
Confidence 85 23444443 345899999998767777777777777664 22 89999999998866
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.2e-09 Score=86.98 Aligned_cols=167 Identities=14% Similarity=0.170 Sum_probs=100.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc-cccccCCCCCceeeEeEEEE--------------e-----------eCCcE
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTV--------------L-----------KDGQV 70 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~-~~~~~~~~~~t~~~~~~~~~--------------~-----------~~~~~ 70 (363)
.+..+|++||+...|||||.++|+|--. .++.......|++..+.... . .--+.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 4568999999999999999999998632 11112222233322221100 0 00135
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCC----HHHHHHHHHHHHHhccccccceEEEEeC
Q 017924 71 VNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS----QEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 71 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~i~v~n~ 146 (363)
+.|+|.||.. -+...+.....--|+.++|+.++..+. .+....|+ ..|-+ +++++-||
T Consensus 88 VSfVDaPGHe-----------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale----Iigik---~iiIvQNK 149 (415)
T COG5257 88 VSFVDAPGHE-----------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE----IIGIK---NIIIVQNK 149 (415)
T ss_pred EEEeeCCchH-----------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh----hhccc---eEEEEecc
Confidence 7899999932 344444444445589999998874433 33333333 33433 89999999
Q ss_pred CCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 147 ~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
+|+.+. +...+.-++ +++++ .+..-.-......|+..+.+++.|++.|.+.+...
T Consensus 150 IDlV~~--E~AlE~y~q-----Ik~Fv---kGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 150 IDLVSR--ERALENYEQ-----IKEFV---KGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred cceecH--HHHHHHHHH-----HHHHh---cccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 999976 433333222 33332 33322222445778888999999999999987653
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-09 Score=84.47 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=39.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (363)
...+|+++|.+|+|||||+|+|.|......+...+. |..... +. .+..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~-T~~~~~--~~--~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGE-TKVWQY--IT--LMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCe-eEeEEE--EE--cCCCEEEEECcCC
Confidence 356899999999999999999998876444444432 322222 11 2345789999995
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-08 Score=83.30 Aligned_cols=108 Identities=19% Similarity=0.128 Sum_probs=65.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc-cccccccCCCCCceeeEeEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR-KAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
+-..|+|+|+.++|||||+|.|+|. ..|........+|........... .+..+.++||+|+++...........+.
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 3368999999999999999999988 356555544455554443333331 2568899999999986543301111111
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (363)
..... -.++++|.... .....+...+..+.+
T Consensus 86 ~l~~l---lss~~i~n~~~--~~~~~~~~~l~~~~~ 116 (224)
T cd01851 86 ALATL---LSSVLIYNSWE--TILGDDLAALMGLLK 116 (224)
T ss_pred HHHHH---HhCEEEEeccC--cccHHHHHHHHHHHH
Confidence 11111 23677776664 344555555555544
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.6e-09 Score=103.50 Aligned_cols=117 Identities=18% Similarity=0.315 Sum_probs=73.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccccc--------------CCCCCceeeEeEEEEe--e-CCcEEEEEeCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA--------------GSSGVTKTCEMKTTVL--K-DGQVVNVIDTPGLFD 81 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~--~-~~~~~~l~DtpG~~~ 81 (363)
-.+|+|+|+.++|||||+++|+......... ..++.|+......+.| . .+..++|+||||+.+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 3689999999999999999986332100000 0112233222222222 1 356789999999877
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
. ..++... ...+|++++|+|+...........++.+... +. +.++++||+|...
T Consensus 100 f-------~~~~~~~----l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~~----~~iv~iNK~D~~~ 153 (731)
T PRK07560 100 F-------GGDVTRA----MRAVDGAIVVVDAVEGVMPQTETVLRQALRE-RV----KPVLFINKVDRLI 153 (731)
T ss_pred h-------HHHHHHH----HHhcCEEEEEEECCCCCCccHHHHHHHHHHc-CC----CeEEEEECchhhc
Confidence 3 2233332 3456999999998766666666666654432 22 6789999999763
|
|
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.8e-08 Score=69.80 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=74.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhh-cccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL-GRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~-g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+.+|+.+|-.+|||||++-.|. ++.. ....|+...+..+.+ .+..++++|.-|.. .|+..
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~------~~ipTvGFnvetVty-kN~kfNvwdvGGqd-----------~iRpl 77 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSV------TTIPTVGFNVETVTY-KNVKFNVWDVGGQD-----------KIRPL 77 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCc------ccccccceeEEEEEe-eeeEEeeeeccCch-----------hhhHH
Confidence 46899999999999999996665 3332 122344445555666 67788999998843 46666
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcccccc--ceEEEEeCCCCCCc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD--YMIVVFTGGDDLED 152 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~i~v~n~~D~~~~ 152 (363)
+..++.+..++|||+|...+ ..-+.++- .+...++...+. +++|+.||-|+...
T Consensus 78 WrhYy~gtqglIFV~Dsa~~-dr~eeAr~-ELh~ii~~~em~~~~~LvlANkQDlp~A 133 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADR-DRIEEARN-ELHRIINDREMRDAIILILANKQDLPDA 133 (180)
T ss_pred HHhhccCCceEEEEEeccch-hhHHHHHH-HHHHHhCCHhhhcceEEEEecCcccccc
Confidence 66777889999999997634 32233332 233333332111 55566799998654
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.8e-08 Score=83.82 Aligned_cols=156 Identities=13% Similarity=0.172 Sum_probs=103.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc--c---------cc---c-----------------cCCCCCceeeEeEEEEee
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA--F---------KA---S-----------------AGSSGVTKTCEMKTTVLK 66 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~--~---------~~---~-----------------~~~~~~t~~~~~~~~~~~ 66 (363)
+-+|++-+|...-||||||-.|+-... | .+ + .-..++|++.-+.++..
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT- 83 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST- 83 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc-
Confidence 347999999999999999977652110 0 00 0 11245677777777665
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeC
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~ 146 (363)
..+.+.+.||||. +++.+-+.....-+|..++++|+...+-...++ -..+..++|-. ++++.+||
T Consensus 84 ~KRkFIiADTPGH-----------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR-Hs~I~sLLGIr---hvvvAVNK 148 (431)
T COG2895 84 EKRKFIIADTPGH-----------EQYTRNMATGASTADLAILLVDARKGVLEQTRR-HSFIASLLGIR---HVVVAVNK 148 (431)
T ss_pred ccceEEEecCCcH-----------HHHhhhhhcccccccEEEEEEecchhhHHHhHH-HHHHHHHhCCc---EEEEEEee
Confidence 7888999999993 455555555566789999999985343333333 34556666654 89999999
Q ss_pred CCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHH
Q 017924 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQV 197 (363)
Q Consensus 147 ~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (363)
+|+..-+.+.++++... +..+...++.....+ .+.|+..+.++
T Consensus 149 mDLvdy~e~~F~~I~~d-----y~~fa~~L~~~~~~~---IPiSAl~GDNV 191 (431)
T COG2895 149 MDLVDYSEEVFEAIVAD-----YLAFAAQLGLKDVRF---IPISALLGDNV 191 (431)
T ss_pred ecccccCHHHHHHHHHH-----HHHHHHHcCCCcceE---EechhccCCcc
Confidence 99997766788877777 666777766544322 24455555444
|
|
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-09 Score=81.21 Aligned_cols=117 Identities=20% Similarity=0.130 Sum_probs=71.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
++++|||..++||||+|...+.. .|.. ....++.++........ ..+..+.+|||.|.. ++.....
T Consensus 21 iK~vivGng~VGKssmiqryCkg-ifTk-dykktIgvdflerqi~v~~Edvr~mlWdtagqe-----------EfDaItk 87 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKG-IFTK-DYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQE-----------EFDAITK 87 (246)
T ss_pred EEEEEECCCccchHHHHHHHhcc-cccc-ccccccchhhhhHHHHhhHHHHHHHHHHhccch-----------hHHHHHH
Confidence 79999999999999999988732 2211 11111111111111111 012344578888843 4444444
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..++++.+.++|++.+++.+-+. ..+.+.+..-++. .|.++|-||+|++++
T Consensus 88 Ayyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 88 AYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVED 139 (246)
T ss_pred HHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhHh
Confidence 56678899999999875655333 3344455554443 299999999999866
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-09 Score=83.99 Aligned_cols=63 Identities=33% Similarity=0.400 Sum_probs=36.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccc-----cCCCCCce-eeEeEEEEeeCCcEEEEEeCCCCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS-----AGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~-----~~~~~~t~-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (363)
+.+++|+|++|||||||||.|.+...+..+ ...|..|+ ....+. . .+ ...++||||+.+....
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~--l-~~-g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFP--L-PD-GGYIIDTPGFRSFGLW 103 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEE--E-TT-SEEEECSHHHHT--GC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEe--c-CC-CcEEEECCCCCccccc
Confidence 369999999999999999999988543321 12233333 222222 2 22 3459999998876543
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2e-08 Score=90.05 Aligned_cols=140 Identities=21% Similarity=0.309 Sum_probs=90.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhh---ccc------------------ccc--------cccCCCCCceeeEeEEEEeeCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL---GRK------------------AFK--------ASAGSSGVTKTCEMKTTVLKDG 68 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~---g~~------------------~~~--------~~~~~~~~t~~~~~~~~~~~~~ 68 (363)
.....+++|+..+|||||+-.|+ |.. .|. ......++|.......+.. ..
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes-~~ 254 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES-KS 254 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec-Cc
Confidence 45789999999999999997764 111 110 0012244555555555554 67
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecC-CCC----C-HHHHHHHHHHHHHhccccccceEE
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRF----S-QEEETAVHRLPNLFGKNVFDYMIV 142 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~-~~~----~-~~~~~~l~~~~~~~~~~~~~~~i~ 142 (363)
..++|+|+||..|+. -..+ .....+|+.++|+|++ +.| . .+..+....+...+|-. .++|
T Consensus 255 ~~~tliDaPGhkdFi------~nmi-----~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~---qliv 320 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFI------PNMI-----SGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGIS---QLIV 320 (603)
T ss_pred eeEEEecCCCccccc------hhhh-----ccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcc---eEEE
Confidence 789999999966632 1122 2334678889999876 112 1 23333344455556644 7999
Q ss_pred EEeCCCCCCcchhhHHHHhccCCCchHHHHH-HhcC
Q 017924 143 VFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCD 177 (363)
Q Consensus 143 v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~ 177 (363)
++||+|.++.+...++++... +..++ +.|+
T Consensus 321 aiNKmD~V~Wsq~RF~eIk~~-----l~~fL~~~~g 351 (603)
T KOG0458|consen 321 AINKMDLVSWSQDRFEEIKNK-----LSSFLKESCG 351 (603)
T ss_pred EeecccccCccHHHHHHHHHH-----HHHHHHHhcC
Confidence 999999998877888888777 77666 5554
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.8e-09 Score=86.81 Aligned_cols=130 Identities=18% Similarity=0.123 Sum_probs=68.9
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCC
Q 017924 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (363)
Q Consensus 70 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~ 149 (363)
.+.++||||....... ......+.+.+.... .+++++++|+.+..+..+.....++..........++++|+||+|.
T Consensus 98 ~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence 5789999996543211 222334444444322 7899999998744445444333333211100112389999999999
Q ss_pred CCcchhhHHHHhccCCC-------------------chHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 150 LEDHEKTLEDFLGHECP-------------------KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 150 ~~~~~~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
... ..++.......+ ..+.+.+...+..+ .....|+.++.++.+|++.|.+.+
T Consensus 175 ~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~----~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 175 LSE--EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPV----RVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred cCc--hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCC----cEEEEECCCCcCHHHHHHHHHHHc
Confidence 866 333322221000 00111122222111 123456677788999999888776
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.5e-09 Score=84.93 Aligned_cols=122 Identities=15% Similarity=0.047 Sum_probs=66.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee-------------EeEEEEee--CCcEEEEEeCCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-------------EMKTTVLK--DGQVVNVIDTPGLFDLS 83 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~-------------~~~~~~~~--~~~~~~l~DtpG~~~~~ 83 (363)
+..++|+|+||||||||+++|+|-.. +..|.+..+. .+.++.+. ....+++.|...++...
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~----p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p 103 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLK----PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYP 103 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC----CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCc
Confidence 57999999999999999999998765 4444443332 22333221 12355666665443211
Q ss_pred -------CChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 84 -------AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 84 -------~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
.+..+ .+.+..++... +..-+....-+.+++++++++-..+.+.... +++++ +|++|....
T Consensus 104 ~~~~~~~~~~~D-~~~v~~aL~~~----~~~~la~r~~~~LSGGerQrv~iArALaQ~~---~iLLLDEPTs~LDi~~Q 174 (258)
T COG1120 104 HLGLFGRPSKED-EEIVEEALELL----GLEHLADRPVDELSGGERQRVLIARALAQET---PILLLDEPTSHLDIAHQ 174 (258)
T ss_pred ccccccCCCHhH-HHHHHHHHHHh----CcHHHhcCcccccChhHHHHHHHHHHHhcCC---CEEEeCCCccccCHHHH
Confidence 11111 11122222111 1111111111378899998887777766543 56666 788887643
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-07 Score=89.05 Aligned_cols=132 Identities=19% Similarity=0.187 Sum_probs=69.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee--EeEEEEeeCC-cEEEEEeCCCCCCC-CCChHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLKDG-QVVNVIDTPGLFDL-SAGSEFVGKEI 93 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~~~-~~~~l~DtpG~~~~-~~~~~~~~~~~ 93 (363)
++.+|+|+|+||||||||+++|+|... +..|.++... .+.++.. .. ..+..-.++ +... ..........+
T Consensus 337 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~----p~~G~i~~~~~~~igy~~Q-~~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 410 (638)
T PRK10636 337 PGSRIGLLGRNGAGKSTLIKLLAGELA----PVSGEIGLAKGIKLGYFAQ-HQLEFLRADESP-LQHLARLAPQELEQKL 410 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCeEEECCCEEEEEecC-cchhhCCccchH-HHHHHHhCchhhHHHH
Confidence 467999999999999999999999875 5555544321 2222211 10 000000010 0000 00000001112
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcchhhHHHHhcc
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~~~l~~~~~~ 163 (363)
...+... +...-..-..+ ..++++++.++.+...+.... +++|+ +|++|.... ..+.+++..
T Consensus 411 ~~~L~~~--~l~~~~~~~~~-~~LSgGekqRl~La~~l~~~p---~lLlLDEPt~~LD~~~~--~~l~~~L~~ 475 (638)
T PRK10636 411 RDYLGGF--GFQGDKVTEET-RRFSGGEKARLVLALIVWQRP---NLLLLDEPTNHLDLDMR--QALTEALID 475 (638)
T ss_pred HHHHHHc--CCChhHhcCch-hhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHHHHHHHH
Confidence 2222111 11000000122 378999999999888877653 56666 899998765 677766655
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-08 Score=91.81 Aligned_cols=12 Identities=8% Similarity=0.401 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 017924 199 QLLSLVNSVIVQ 210 (363)
Q Consensus 199 ~l~~~l~~~~~~ 210 (363)
++++.+...++.
T Consensus 386 ~~f~lL~n~vkd 397 (1102)
T KOG1924|consen 386 EVFELLANTVKD 397 (1102)
T ss_pred HHHHHHHHhhhh
Confidence 333444444433
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-08 Score=80.81 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=75.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-------EEEeeCCc---EEEEEeCCCCC--CCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-------TTVLKDGQ---VVNVIDTPGLF--DLSAG 85 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-------~~~~~~~~---~~~l~DtpG~~--~~~~~ 85 (363)
++-.|+|+|++|||||||+|.|+|-.. ++.|.+....... .+.+.+.. -.++.|...+. .....
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~----p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~ 103 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEK----PTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKS 103 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccc
Confidence 457999999999999999999999887 5555544433221 11110111 11233333222 11112
Q ss_pred hHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcchhhHHHHhc
Q 017924 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~~~l~~~~~ 162 (363)
..+.......++... +... +-...-+.+|++.++++...+.+.... .++++ +..+|..+. ..+.+.+.
T Consensus 104 ~~e~~~~a~~~L~~V--gL~~--~~~~~P~qLSGGMrQRVaiARAL~~~P---~lLLlDEPFgALDalTR--~~lq~~l~ 174 (248)
T COG1116 104 KAEARERAKELLELV--GLAG--FEDKYPHQLSGGMRQRVAIARALATRP---KLLLLDEPFGALDALTR--EELQDELL 174 (248)
T ss_pred hHhHHHHHHHHHHHc--CCcc--hhhcCccccChHHHHHHHHHHHHhcCC---CEEEEcCCcchhhHHHH--HHHHHHHH
Confidence 222222233332211 1111 111122478888998888888876553 34444 456665544 55554433
Q ss_pred cCCCchHHHHHHhcCCceEEecC
Q 017924 163 HECPKPLKEILQLCDNRCVLFDN 185 (363)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~ 185 (363)
+++...+...+++.|
T Consensus 175 --------~lw~~~~~TvllVTH 189 (248)
T COG1116 175 --------RLWEETRKTVLLVTH 189 (248)
T ss_pred --------HHHHhhCCEEEEEeC
Confidence 355555554444433
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-09 Score=95.65 Aligned_cols=127 Identities=17% Similarity=0.126 Sum_probs=72.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCC-------CCCCCCChHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPG-------LFDLSAGSEFVG 90 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG-------~~~~~~~~~~~~ 90 (363)
.-+|++||+||+|||||++.++|... +..|.+..........+. +...-.-.|-.. +.+ ... .
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~gdl~----p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~--~~~---~ 486 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITGDLQ----PTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPD--EKE---L 486 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhhccc----cccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccc--cch---H
Confidence 45999999999999999999999877 555554443333222110 100000111111 111 112 2
Q ss_pred HHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE----EeCCCCCCcchhhHHHHhcc
Q 017924 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v----~n~~D~~~~~~~~l~~~~~~ 163 (363)
.++...+..+ +..+-.-+.... .++.+++.++-.....+.. |-+++ +||+|.... ..+.+++..
T Consensus 487 e~~r~ilgrf--gLtgd~q~~p~~-~LS~Gqr~rVlFa~l~~kq----P~lLlLDEPtnhLDi~ti--d~laeaiNe 554 (614)
T KOG0927|consen 487 EEMRSILGRF--GLTGDAQVVPMS-QLSDGQRRRVLFARLAVKQ----PHLLLLDEPTNHLDIETI--DALAEAINE 554 (614)
T ss_pred HHHHHHHHHh--CCCccccccchh-hcccccchhHHHHHHHhcC----CcEEEecCCCcCCCchhH--HHHHHHHhc
Confidence 2333333333 344444445555 8888999888777766654 44444 799998766 555555554
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.8e-09 Score=81.87 Aligned_cols=57 Identities=32% Similarity=0.391 Sum_probs=39.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (363)
...+|+|+|.+|+|||||||+|+|......+...| .|...+.. .. +..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg-~T~~~~~~--~~--~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPG-VTKSMQEV--HL--DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCC-eEcceEEE--Ee--CCCEEEEECcCC
Confidence 34799999999999999999999987644444333 23322222 22 346789999995
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-08 Score=96.52 Aligned_cols=111 Identities=23% Similarity=0.313 Sum_probs=71.3
Q ss_pred EcCCCCchHHHHHHhhccccc---cccc-------------CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHH
Q 017924 25 LGRTGNGKSATGNSILGRKAF---KASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (363)
Q Consensus 25 vG~~g~GKSTli~~l~g~~~~---~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~ 88 (363)
||+.|+|||||++.|+..... .... ...+.|+......+.+ ++..++++||||..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------ 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence 699999999999999533211 0000 0133455555555666 7889999999996541
Q ss_pred HHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
...... +...+|++++|+|++..........+..+... + .++++|+||+|....
T Consensus 74 -~~~~~~----~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-~----~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 74 -TGEVER----ALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-G----VPRIIFVNKMDRAGA 127 (668)
T ss_pred -HHHHHH----HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 122222 23367999999998755555555555544432 2 288999999998754
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.8e-08 Score=91.93 Aligned_cols=134 Identities=15% Similarity=0.084 Sum_probs=67.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee--EeEEEEeeCCc----EEEEEeCCCCCCCCCChHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLKDGQ----VVNVIDTPGLFDLSAGSEFVG 90 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~~~~----~~~l~DtpG~~~~~~~~~~~~ 90 (363)
.++.+|+|+|+||||||||+++|+|... +..|.+.... .+.++.. ... ..++.|...+...........
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~----p~~G~i~~~~~~~i~y~~q-~~~~l~~~~tv~e~l~~~~~~~~~~~~~ 417 (635)
T PRK11147 343 QRGDKIALIGPNGCGKTTLLKLMLGQLQ----ADSGRIHCGTKLEVAYFDQ-HRAELDPEKTVMDNLAEGKQEVMVNGRP 417 (635)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC----CCCcEEEECCCcEEEEEeC-cccccCCCCCHHHHHHhhcccccccchH
Confidence 3456999999999999999999999865 4445443321 1222211 000 011111111000000000001
Q ss_pred HHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcchhhHHHHhcc
Q 017924 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~~~l~~~~~~ 163 (363)
..+...+....-..+. .-..+ ..++++++.++.+...+.... +++|+ +|++|.... ..+.+.+..
T Consensus 418 ~~~~~~l~~~~l~~~~--~~~~~-~~LSgGekqRl~la~al~~~p---~lLlLDEPt~~LD~~~~--~~l~~~l~~ 485 (635)
T PRK11147 418 RHVLGYLQDFLFHPKR--AMTPV-KALSGGERNRLLLARLFLKPS---NLLILDEPTNDLDVETL--ELLEELLDS 485 (635)
T ss_pred HHHHHHHHhcCCCHHH--HhChh-hhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHHHHHHHh
Confidence 1112222111000000 00012 378999999999888877653 56666 799987755 566655554
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.82 E-value=4e-07 Score=78.98 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
....|+|+|.+|+|||||++.|.+
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999864
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.7e-09 Score=80.14 Aligned_cols=57 Identities=30% Similarity=0.445 Sum_probs=39.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (363)
...+|+|+|.+|+|||||+|+|++...+. ...+..++..... +.. +..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~--~~~~~~~t~~~~~-~~~--~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK--VGNVPGTTTSQQE-VKL--DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc--ccCCCCcccceEE-EEe--cCCEEEEECCCC
Confidence 45799999999999999999999876533 2333334333322 222 356889999995
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-08 Score=83.34 Aligned_cols=126 Identities=17% Similarity=0.319 Sum_probs=73.1
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC------C------------------------
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD------G------------------------ 68 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~------~------------------------ 68 (363)
+.-|+++|....||||||+-|++++. .+ .-.|+..+......+.+.+ |
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dy-pg-~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDY-PG-LRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCC-Cc-cccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 36899999999999999999997653 21 1111111111111110000 0
Q ss_pred -----------cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccc
Q 017924 69 -----------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKN 135 (363)
Q Consensus 69 -----------~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~ 135 (363)
..+++|||||+....-..-...-.+...+..+..++|.|++++|+. .++-++ .+.+.. +.|.+
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~h-KLDIsdEf~~vi~a---LkG~E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAH-KLDISDEFKRVIDA---LKGHE 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechh-hccccHHHHHHHHH---hhCCc
Confidence 1368999999875321100001123334444556899999999987 665444 334443 33433
Q ss_pred cccceEEEEeCCCCCCc
Q 017924 136 VFDYMIVVFTGGDDLED 152 (363)
Q Consensus 136 ~~~~~i~v~n~~D~~~~ 152 (363)
+.+-||+||.|.+..
T Consensus 212 --dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 --DKIRVVLNKADQVDT 226 (532)
T ss_pred --ceeEEEeccccccCH
Confidence 267899999999977
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.1e-08 Score=87.55 Aligned_cols=170 Identities=17% Similarity=0.223 Sum_probs=98.7
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCC--CCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS--GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....||+|||.-|+||||||=+|+...- ...+... .+++- ..+ .......+++||....+ ....+.+++.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef-~~~VP~rl~~i~IP---adv-tPe~vpt~ivD~ss~~~---~~~~l~~Eir 78 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEF-VDAVPRRLPRILIP---ADV-TPENVPTSIVDTSSDSD---DRLCLRKEIR 78 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhc-cccccccCCccccC---Ccc-CcCcCceEEEecccccc---hhHHHHHHHh
Confidence 3458999999999999999999996553 2111111 11211 111 11344577999985333 1222333443
Q ss_pred HHHhccCCCccEEEEEeecCC--CCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHH----HhccCCCch
Q 017924 95 KCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED----FLGHECPKP 168 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~----~~~~~~~~~ 168 (363)
.+|++.++...++ .+..-...||=+++..+|.....|+|+|.||+|........++. .+..
T Consensus 79 --------kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~----- 145 (625)
T KOG1707|consen 79 --------KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIA----- 145 (625)
T ss_pred --------hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHH-----
Confidence 5688888887662 34455567788888888776777999999999987652222222 2221
Q ss_pred HHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCH
Q 017924 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD 218 (363)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 218 (363)
+.+ ++.| ...|++...++.+++..-.+.+-..-+..|..
T Consensus 146 f~E-iEtc----------iecSA~~~~n~~e~fYyaqKaVihPt~PLyda 184 (625)
T KOG1707|consen 146 FAE-IETC----------IECSALTLANVSELFYYAQKAVIHPTSPLYDA 184 (625)
T ss_pred hHH-HHHH----------HhhhhhhhhhhHhhhhhhhheeeccCcccccc
Confidence 111 1111 24566666677777666555554433444443
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-07 Score=82.69 Aligned_cols=119 Identities=18% Similarity=0.183 Sum_probs=75.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc-cccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...|+|||++|+||||||++|+..-. +......|++|+... ..++++|+.+|. | ...+....
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsg-------K~RRiTflEcp~--D--------l~~miDva 131 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSG-------KTRRITFLECPS--D--------LHQMIDVA 131 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeec-------ceeEEEEEeChH--H--------HHHHHhHH
Confidence 35788999999999999999985432 111223344443221 457888999983 2 12233222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
. =+|.+++++|+.-.+..+....|..+..+ |- ..++-|+||+|+.... ..|....++
T Consensus 132 K----IaDLVlLlIdgnfGfEMETmEFLnil~~H-Gm---PrvlgV~ThlDlfk~~-stLr~~KKr 188 (1077)
T COG5192 132 K----IADLVLLLIDGNFGFEMETMEFLNILISH-GM---PRVLGVVTHLDLFKNP-STLRSIKKR 188 (1077)
T ss_pred H----hhheeEEEeccccCceehHHHHHHHHhhc-CC---CceEEEEeecccccCh-HHHHHHHHH
Confidence 2 24889999998766666666666665553 32 2688899999998652 345544443
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=6e-08 Score=86.67 Aligned_cols=89 Identities=19% Similarity=0.140 Sum_probs=53.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe--------------------eC---CcEEEEEeC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--------------------KD---GQVVNVIDT 76 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~l~Dt 76 (363)
.+|+|||.+|+|||||+|+|++... ..... ...|.+........ .+ ...+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y-~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANY-PFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCC-CCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 4899999999999999999997753 11111 11222222222110 01 245789999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
||+.........+...+... ...+|++++|+++.
T Consensus 80 aGl~~ga~~g~glg~~fL~~----ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDD----LRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHH----HHHCCEEEEEEeCC
Confidence 99865322222233344333 45679999999985
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-08 Score=82.59 Aligned_cols=58 Identities=28% Similarity=0.305 Sum_probs=37.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccc------ccCCCCCceeeEeEEEEeeCCcEEEEEeCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (363)
+.+++|+|.+|+|||||||+|.+...... ..+..+.|+.... .+.. +..+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~-~~~~--~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLI-KIPL--GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeE-EEec--CCCCEEEeCcCC
Confidence 36899999999999999999997653221 1222223332222 2222 225789999996
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.1e-08 Score=87.95 Aligned_cols=62 Identities=24% Similarity=0.366 Sum_probs=40.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCC-----CCCce-eeEeEEEEeeCCcEEEEEeCCCCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~-----~~~t~-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (363)
..++|+|.+|+|||||||+|+|......+..+ |..|+ ...++.+. .+ ..|+||||+......
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~--~~--~~liDTPGir~~~l~ 273 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP--HG--GDLIDSPGVREFGLW 273 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec--CC--CEEEECCCCCcccCC
Confidence 36899999999999999999988654333222 22333 33333331 12 249999999876543
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-08 Score=76.15 Aligned_cols=65 Identities=31% Similarity=0.370 Sum_probs=42.1
Q ss_pred cCCCCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
..|+.....+++++|.+|+|||||+|+|+|..........+ .|... ..+.. + ..++++||||+..
T Consensus 76 ~iSa~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~-~~~~~--~~~~~-~-~~~~i~DtpG~~~ 140 (141)
T cd01857 76 FFSALKENATIGLVGYPNVGKSSLINALVGKKKVSVSATPG-KTKHF--QTIFL-T-PTITLCDCPGLVF 140 (141)
T ss_pred EEEecCCCcEEEEECCCCCCHHHHHHHHhCCCceeeCCCCC-cccce--EEEEe-C-CCEEEEECCCcCC
Confidence 34444444599999999999999999999887533222222 22222 22333 2 2578999999753
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.5e-08 Score=91.55 Aligned_cols=44 Identities=16% Similarity=0.079 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcchhhHHHHhcc
Q 017924 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~~~l~~~~~~ 163 (363)
..++++++.++.+...+.... .++++ +|++|.... .++.+++..
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P---~lLLLDEPtn~LD~~~~--~~L~~~L~~ 194 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRS---DLLLLDEPTNHLDLDAV--IWLEKWLKS 194 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCC---CEEEEcCCCCcCCHHHH--HHHHHHHHh
Confidence 378999999999998887653 45555 799998755 666666554
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.9e-07 Score=65.18 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=70.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+..|||.-|+|||.|+..++.. .|..+. +.++.++.....+.++ ....+.+|||.| .+.++....
T Consensus 12 fkyiiigdmgvgkscllhqftek-kfmadc-phtigvefgtriievsgqkiklqiwdtag-----------qerfravtr 78 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEK-KFMADC-PHTIGVEFGTRIIEVSGQKIKLQIWDTAG-----------QERFRAVTR 78 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHH-HHhhcC-CcccceecceeEEEecCcEEEEEEeeccc-----------HHHHHHHHH
Confidence 46778999999999999998844 343322 2233333333344442 234677999998 344555555
Q ss_pred ccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
..++++.+.+.|.|++.+-+-... .++.-.+.+-.... -++++.||.|+..
T Consensus 79 syyrgaagalmvyditrrstynhlsswl~dar~ltnpnt--~i~lignkadle~ 130 (215)
T KOG0097|consen 79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT--VIFLIGNKADLES 130 (215)
T ss_pred HHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCce--EEEEecchhhhhh
Confidence 667788899999999834333332 23333333333221 3445569988753
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.3e-08 Score=83.40 Aligned_cols=66 Identities=26% Similarity=0.333 Sum_probs=45.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~ 88 (363)
...+|+|||.+|+|||||+|+|+|......+...+ +|...+ .+.. +..+.++||||+......+.+
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g-~T~~~~--~~~~--~~~~~l~DtPGi~~~~~~~~~ 185 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPG-VTKAQQ--WIKL--GKGLELLDTPGILWPKLEDQE 185 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCC-eEEEEE--EEEe--CCcEEEEECCCcCCCCCCcHH
Confidence 45799999999999999999999987643333333 333332 2222 346789999999876544443
|
|
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.1e-08 Score=75.75 Aligned_cols=116 Identities=23% Similarity=0.221 Sum_probs=77.1
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.++++|||..++|||+|+-..+- ..|. .....|+... ...+...++. .+.++||.|..+.+ .++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~-~~fp---~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYD--------rlR- 70 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTT-NAFP---EEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYD--------RLR- 70 (198)
T ss_pred eeEEEEECCCCcCceEEEEEecc-CcCc---ccccCeEEccceEEEEecCCCEEEEeeeecCCCcccc--------ccc-
Confidence 37999999999999999987763 3333 2222333222 2233331243 56799999977642 121
Q ss_pred HHhccCCCccEEEEEeecCCCCCHH--HHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQE--EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..++...|+|++++++.++.+-. ...++-.+..++.. + |+|+|.+|.|+..+
T Consensus 71 --plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~-v--piiLVGtk~DLr~d 124 (198)
T KOG0393|consen 71 --PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN-V--PIILVGTKADLRDD 124 (198)
T ss_pred --ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC-C--CEEEEeehHHhhhC
Confidence 34788999999999987454443 34566677776643 3 99999999998844
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-06 Score=64.73 Aligned_cols=119 Identities=22% Similarity=0.188 Sum_probs=75.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhh-cccccccccCCCCCcee-eEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL-GRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~-g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
..++|+|+|.-++|||++|.-|+ |.... ...-..|++ ..+..+...++ ..+.|.||.|+.+. ..++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~---~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~-------~~eL 77 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVP---GTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG-------QQEL 77 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCC---CCccccchhhheeEeeecCCChhheEEEeecccccCc-------hhhh
Confidence 45799999999999999997654 54431 111222332 22233333222 46789999998763 1234
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc---ccccceEEEEeCCCCCCc
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK---NVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~i~v~n~~D~~~~ 152 (363)
.+... .-+|++++|.+. .+.+...+++++++.+.+ ....+++++.|+.|....
T Consensus 78 prhy~---q~aDafVLVYs~---~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 78 PRHYF---QFADAFVLVYSP---MDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred hHhHh---ccCceEEEEecC---CCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence 44322 235899999874 456677778887776533 122388899999998755
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.3e-08 Score=80.16 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|||+||||||||+++|+|-.. +..|.+.+
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~----p~~G~i~~ 63 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLK----PSSGEIKI 63 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc----CCcceEEE
Confidence 446999999999999999999999765 55555443
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-07 Score=82.56 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=51.8
Q ss_pred EEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe---------------------e--CCcEEEEEeCCC
Q 017924 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---------------------K--DGQVVNVIDTPG 78 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~---------------------~--~~~~~~l~DtpG 78 (363)
|+|||.+|+|||||+|+|++... ....... .|....+....+ . ....+.++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pf-tT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPF-TTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCC-ccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 68999999999999999997653 2111111 222222221111 0 224688999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
+.........+...+.. ....+|++++|+|+.
T Consensus 79 lv~ga~~~~glg~~fL~----~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKFLD----DLRDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHHHH----HHHHCCEEEEEEeCC
Confidence 85422112223333333 345779999999986
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-07 Score=82.53 Aligned_cols=116 Identities=20% Similarity=0.372 Sum_probs=81.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc-cccc-----------c--cCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK-AFKA-----------S--AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~-~~~~-----------~--~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (363)
.+|+||.+...|||||++.|+.+. .|.. . .-..++|+-.+...+.| ++..++++||||.-|++.
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFGG- 83 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFGG- 83 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCccc-
Confidence 689999999999999999997553 2211 1 12355666666667777 889999999999888643
Q ss_pred hHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
+..+.+. -+|.+++++|+....-...+..++...+. |- +-|+|+||+|....
T Consensus 84 ------EVERvl~----MVDgvlLlVDA~EGpMPQTrFVlkKAl~~-gL----~PIVVvNKiDrp~A 135 (603)
T COG1217 84 ------EVERVLS----MVDGVLLLVDASEGPMPQTRFVLKKALAL-GL----KPIVVINKIDRPDA 135 (603)
T ss_pred ------hhhhhhh----hcceEEEEEEcccCCCCchhhhHHHHHHc-CC----CcEEEEeCCCCCCC
Confidence 3444333 45899999998745555566666555443 22 56788899998754
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.4e-08 Score=81.24 Aligned_cols=64 Identities=34% Similarity=0.413 Sum_probs=40.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccc----c-CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS----A-GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~----~-~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (363)
.+...+++|.+|+|||||+|+|.+......+ . ..|..|++. ...+.+ .+ .-.++|||||.....
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~-~~l~~l-~~-gG~iiDTPGf~~~~l 231 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTH-VELFPL-PG-GGWIIDTPGFRSLGL 231 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccce-EEEEEc-CC-CCEEEeCCCCCccCc
Confidence 4468999999999999999999986543221 1 133334322 222222 22 223899999987543
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-07 Score=73.33 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=29.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
.++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~ 58 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI----PNGDNDEW 58 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC----CCCcEEEE
Confidence 4567999999999999999999999876 55555443
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-06 Score=82.52 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+++|+|+||+|||||+++|+|.
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 68999999999999999999877
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.5e-08 Score=85.86 Aligned_cols=60 Identities=27% Similarity=0.343 Sum_probs=38.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCC-----CCCce-eeEeEEEEeeCCcEEEEEeCCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~-----~~~t~-~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (363)
..++|+|.+|+|||||||+|++......+..+ |..|+ ....+ ....+ ..|+||||+....
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~--~l~~g--~~liDTPG~~~~~ 238 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELF--ELPNG--GLLADTPGFNQPD 238 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEE--ECCCC--cEEEeCCCccccc
Confidence 46899999999999999999987654332222 22233 33222 22122 2699999987643
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-07 Score=78.28 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999999865
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.1e-07 Score=76.19 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=55.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeC-----------------CcEEEEEeCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKD-----------------GQVVNVIDTPGLF 80 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~-----------------~~~~~l~DtpG~~ 80 (363)
..+++|||.+++|||||+|+|+.... .....+ +|++.....+...+ ...+.|+|..|+-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a---~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV 78 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGA---EIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLV 78 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCc---cccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccC
Confidence 36899999999999999999996652 122222 34333333222211 1246799999986
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
.......-++.++...+ +.+|+++.|+++.
T Consensus 79 ~GAs~GeGLGNkFL~~I----RevdaI~hVVr~f 108 (372)
T COG0012 79 KGASKGEGLGNKFLDNI----REVDAIIHVVRCF 108 (372)
T ss_pred CCcccCCCcchHHHHhh----hhcCeEEEEEEec
Confidence 54333344555565544 4678999988754
|
|
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-07 Score=69.33 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=69.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+++++|-.|||||||++.|-....-..-++..+.+....+ .+-.++.+|.-|. .+.++....
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~I------g~m~ftt~DLGGH-----------~qArr~wkd 83 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSI------GGMTFTTFDLGGH-----------LQARRVWKD 83 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHhee------cCceEEEEccccH-----------HHHHHHHHH
Confidence 79999999999999999999644332222444443333333 5566778898883 233334444
Q ss_pred cCCCccEEEEEeecC--CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 100 AKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
++..+|++++++|+. +++.+ .+..+..+...-. -...|++|+.||+|....
T Consensus 84 yf~~v~~iv~lvda~d~er~~e-s~~eld~ll~~e~-la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 84 YFPQVDAIVYLVDAYDQERFAE-SKKELDALLSDES-LATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHhhhceeEeeeehhhHHHhHH-HHHHHHHHHhHHH-HhcCcceeecccccCCCc
Confidence 556789999999875 23322 2222222222110 022389999999998765
|
|
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.5e-08 Score=71.11 Aligned_cols=157 Identities=16% Similarity=0.151 Sum_probs=87.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe-e-------CC--cEEEEEeCCCCCCCCCChHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-K-------DG--QVVNVIDTPGLFDLSAGSEFVG 90 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~-------~~--~~~~l~DtpG~~~~~~~~~~~~ 90 (363)
+.+.+|.+|+|||||+-..+. ..|+..-. .++-++.....+.+ . .+ ..+.+|||.| .
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD-~~F~~qFI-sTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG-----------Q 77 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTD-GKFNTQFI-STVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG-----------Q 77 (219)
T ss_pred HHHhhccCCCCceEEEEEecC-CcccceeE-EEeecccccceEEEeccCCCCCCcceEEEEeeecccc-----------H
Confidence 567789999999999976652 22221100 00111111111111 0 11 2456899998 3
Q ss_pred HHHHHHHhccCCCccEEEEEeecCCCCC-HHHHHHHHHHHHHh-ccccccceEEEEeCCCCCCcchhhHHHHhccCCCch
Q 017924 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP 168 (363)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~-~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~ 168 (363)
+.++.....++..+-++++++|+++.-+ .+.+.++..++.+. ... .-++++.||+|+... ..+.+ ..
T Consensus 78 ERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~--PDivlcGNK~DL~~~--R~Vs~-------~q 146 (219)
T KOG0081|consen 78 ERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCEN--PDIVLCGNKADLEDQ--RVVSE-------DQ 146 (219)
T ss_pred HHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCC--CCEEEEcCccchhhh--hhhhH-------HH
Confidence 4455555556677889999999973333 34455666665542 221 146778899998744 22211 12
Q ss_pred HHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
..++....+..|+. +|+..+.++.+..+.+-.+
T Consensus 147 a~~La~kyglPYfE------TSA~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 147 AAALADKYGLPYFE------TSACTGTNVEKAVELLLDL 179 (219)
T ss_pred HHHHHHHhCCCeee------eccccCcCHHHHHHHHHHH
Confidence 44566777777774 5566666666655554443
|
|
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=69.42 Aligned_cols=163 Identities=18% Similarity=0.134 Sum_probs=93.5
Q ss_pred CCCccEEEEEcCCCCchHHHHHHh-hcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSI-LGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l-~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
++.+.+|.++|--|+||+|++-.+ .|... .. ..|....+..+.+ .+..+.++|.-|-.. ++
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevv-----tt-kPtigfnve~v~y-KNLk~~vwdLggqtS-----------ir 76 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVV-----TT-KPTIGFNVETVPY-KNLKFQVWDLGGQTS-----------IR 76 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCccc-----cc-CCCCCcCcccccc-ccccceeeEccCccc-----------cc
Confidence 456689999999999999987444 22221 11 1121222223333 566777888887443 33
Q ss_pred HHHhccCCCccEEEEEeecC--CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
-.+..++...+++|||+|.+ ++++........++.+---.+. .++++.||.|.... ....+.+.. ++
T Consensus 77 PyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a--~llv~anKqD~~~~--~t~~E~~~~-----L~-- 145 (182)
T KOG0072|consen 77 PYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHA--KLLVFANKQDYSGA--LTRSEVLKM-----LG-- 145 (182)
T ss_pred HHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCc--eEEEEeccccchhh--hhHHHHHHH-----hC--
Confidence 34444567889999999976 3344333334444433211111 46677899998765 443343332 11
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+....++.+. ....|+.++.+++..++++.+.++.
T Consensus 146 l~~Lk~r~~~---Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 146 LQKLKDRIWQ---IVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred hHHHhhheeE---EEeeccccccCCcHHHHHHHHHHhc
Confidence 1112222211 2356788889999999998887653
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-07 Score=90.01 Aligned_cols=103 Identities=15% Similarity=0.112 Sum_probs=70.3
Q ss_pred chHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC-----------------cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 31 GKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 31 GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
+||||++.|.+... ...-.|++|.....+.+..... ..++|+||||... +
T Consensus 473 ~KTtLLD~iR~t~v--~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~-----------F 539 (1049)
T PRK14845 473 HNTTLLDKIRKTRV--AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA-----------F 539 (1049)
T ss_pred ccccHHHHHhCCCc--ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH-----------H
Confidence 49999999998876 3334567777666655544211 1378999999543 2
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
..........+|++++|+|+++.+.......+..+... + .|+++++||+|+..
T Consensus 540 ~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-~----iPiIVViNKiDL~~ 592 (1049)
T PRK14845 540 TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-K----TPFVVAANKIDLIP 592 (1049)
T ss_pred HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-C----CCEEEEEECCCCcc
Confidence 22222344568999999999866777777666655542 2 28999999999863
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.8e-07 Score=69.47 Aligned_cols=35 Identities=31% Similarity=0.316 Sum_probs=28.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~ 59 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE----PDEGIVTW 59 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEE
Confidence 456899999999999999999999875 44454433
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.3e-08 Score=68.90 Aligned_cols=157 Identities=15% Similarity=0.134 Sum_probs=91.6
Q ss_pred EEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 23 ~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+++|.+++|||.|+-... ...|..+..-.++.++-....+.. ++ ..+.+|||.| .+.++......
T Consensus 1 mllgds~~gktcllir~k-dgafl~~~fistvgid~rnkli~~-~~~kvklqiwdtag-----------qerfrsvt~ay 67 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFK-DGAFLAGNFISTVGIDFRNKLIDM-DDKKVKLQIWDTAG-----------QERFRSVTHAY 67 (192)
T ss_pred CccccCccCceEEEEEec-cCceecCceeeeeeeccccceecc-CCcEEEEEEeeccc-----------hHHHhhhhHhh
Confidence 378999999999874332 111211111111222212222222 32 3567999999 34566666667
Q ss_pred CCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
++.+|+++++.|+.++.+-+. +.++..+.+.-...+ .++++.||+|.... ..+..+. -..+.+..+..
T Consensus 68 yrda~allllydiankasfdn~~~wlsei~ey~k~~v--~l~llgnk~d~a~e------r~v~~dd---g~kla~~y~ip 136 (192)
T KOG0083|consen 68 YRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAV--ALMLLGNKCDLAHE------RAVKRDD---GEKLAEAYGIP 136 (192)
T ss_pred hcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhH--hHhhhccccccchh------hccccch---HHHHHHHHCCC
Confidence 789999999999987777544 567778877654444 67788999998643 1111101 11222332332
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+. .+|++++.+++..+-.|.+-+.
T Consensus 137 fm------etsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 137 FM------ETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ce------eccccccccHhHHHHHHHHHHH
Confidence 22 5677888888776666555443
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.2e-07 Score=72.27 Aligned_cols=27 Identities=33% Similarity=0.359 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999765
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.4e-07 Score=79.03 Aligned_cols=122 Identities=16% Similarity=0.209 Sum_probs=69.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhh------cccccccccCC-C----------CCceeeEeEEEEe----------------
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGS-S----------GVTKTCEMKTTVL---------------- 65 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~------g~~~~~~~~~~-~----------~~t~~~~~~~~~~---------------- 65 (363)
...|+++|.+|+||||++..|+ |.......... + .......++....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4699999999999999998886 33221111100 0 0000111111100
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEe
Q 017924 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (363)
Q Consensus 66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n 145 (363)
..+..+.||||+|... .+.....++...... ..++.+++|+|+. .........+.+....+ ..-+|+|
T Consensus 180 ~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~--~~p~e~lLVlda~--~Gq~a~~~a~~F~~~~~-----~~g~IlT 247 (429)
T TIGR01425 180 KENFDIIIVDTSGRHK---QEDSLFEEMLQVAEA--IQPDNIIFVMDGS--IGQAAEAQAKAFKDSVD-----VGSVIIT 247 (429)
T ss_pred hCCCCEEEEECCCCCc---chHHHHHHHHHHhhh--cCCcEEEEEeccc--cChhHHHHHHHHHhccC-----CcEEEEE
Confidence 0145778999999765 344556666665432 2568889999875 22223333333333222 5668899
Q ss_pred CCCCCCc
Q 017924 146 GGDDLED 152 (363)
Q Consensus 146 ~~D~~~~ 152 (363)
|+|....
T Consensus 248 KlD~~ar 254 (429)
T TIGR01425 248 KLDGHAK 254 (429)
T ss_pred CccCCCC
Confidence 9998755
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=85.66 Aligned_cols=128 Identities=15% Similarity=0.031 Sum_probs=74.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe----------EEEEeeCCcEEEEEeC----CCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM----------KTTVLKDGQVVNVIDT----PGLFDLS 83 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~----------~~~~~~~~~~~~l~Dt----pG~~~~~ 83 (363)
++.+++|||++|||||||++.|+|... ++.|.+++...- ..+.|..++.+.+-+| ..+....
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~----~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~ 421 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLA----PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPD 421 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCC----CCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCc
Confidence 457999999999999999999999876 455544443211 1112222333323322 2333434
Q ss_pred CChHHHHHHHHHHHh-ccCCCccEEEEEe-ecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 84 AGSEFVGKEIVKCLG-MAKDGIHAFLVVF-SVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~-~~~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
.++.++.+.+...-. ......+++-.++ +.+..+++++..++...+.+.... +++++ +.|+|..++
T Consensus 422 ~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~---~l~llDEpTA~LD~etE 492 (559)
T COG4988 422 ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPA---SLLLLDEPTAHLDAETE 492 (559)
T ss_pred CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCC---CEEEecCCccCCCHhHH
Confidence 445554444333221 1111133333322 344689999999999888877653 56666 788887655
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-07 Score=80.69 Aligned_cols=64 Identities=25% Similarity=0.300 Sum_probs=43.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCCh
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS 86 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 86 (363)
...+|+|||.+|+|||||+|+|+|......+...+ .|...+ .+.. +..+.++||||+......+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g-~T~~~~--~~~~--~~~~~l~DtPG~~~~~~~~ 180 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPG-VTKGQQ--WIKL--SDGLELLDTPGILWPKFED 180 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCC-eecceE--EEEe--CCCEEEEECCCcccCCCCc
Confidence 45789999999999999999999876533333333 233322 2222 3457899999996654433
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.6e-08 Score=84.26 Aligned_cols=125 Identities=16% Similarity=0.147 Sum_probs=67.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe--eCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
++..++|+|+||||||||+++|+|... ++.|.+.+...-..-.. ......++.+.+.+... .+-.+....+..
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~----p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~-lT~~e~l~~~~~ 104 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLK----PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPE-LTVRENLEFFAR 104 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcC----CCceEEEEcCEeCccCHHHHHhheEEEccCCCCCcc-ccHHHHHHHHHH
Confidence 346899999999999999999999887 56665554332211100 01223456677764432 222222222221
Q ss_pred HHhcc----CCCccEEEEEe------e--cCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCC
Q 017924 96 CLGMA----KDGIHAFLVVF------S--VTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLE 151 (363)
Q Consensus 96 ~~~~~----~~~~~~~l~v~------~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~ 151 (363)
..... ...++-++-.+ + + ..++.+.++.+.....+++.. .++++ ++.+|-..
T Consensus 105 l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-~~lS~G~kqrl~ia~aL~~~P---~lliLDEPt~GLDp~~ 171 (293)
T COG1131 105 LYGLSKEEAEERIEELLELFGLEDKANKKV-RTLSGGMKQRLSIALALLHDP---ELLILDEPTSGLDPES 171 (293)
T ss_pred HhCCChhHHHHHHHHHHHHcCCchhhCcch-hhcCHHHHHHHHHHHHHhcCC---CEEEECCCCcCCCHHH
Confidence 11100 00000011000 1 2 368889999999888888763 34443 56666543
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.3e-07 Score=74.51 Aligned_cols=168 Identities=16% Similarity=0.200 Sum_probs=93.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc---ccccccc--CCCCCceeeEeEEEEee--------CCcEEEEEeCCCCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR---KAFKASA--GSSGVTKTCEMKTTVLK--------DGQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~---~~~~~~~--~~~~~t~~~~~~~~~~~--------~~~~~~l~DtpG~~~~~~~ 85 (363)
+.+++|+|+..+|||||.++|... ..|...+ ...++|.+.....+... ....++++|.||...
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas---- 82 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS---- 82 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH----
Confidence 389999999999999999998632 2233222 22334444443333221 123579999999543
Q ss_pred hHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc-c-hhhHHHHhcc
Q 017924 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-H-EKTLEDFLGH 163 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~-~-~~~l~~~~~~ 163 (363)
+.+.+.....-.|..++|+|+........-..+-.-..++. +.++|+||+|...+ . ...++...++
T Consensus 83 -------LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~-----klvvvinkid~lpE~qr~ski~k~~kk 150 (522)
T KOG0461|consen 83 -------LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCK-----KLVVVINKIDVLPENQRASKIEKSAKK 150 (522)
T ss_pred -------HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhcc-----ceEEEEeccccccchhhhhHHHHHHHH
Confidence 33333333345689999999863333333333332233332 68999999998755 1 1233333333
Q ss_pred CCCchHHHHHHhcCCceEEecCCCcccccch----hHHHHHHHHHHHHHH
Q 017924 164 ECPKPLKEILQLCDNRCVLFDNKTKDEAKGT----EQVRQLLSLVNSVIV 209 (363)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~~ 209 (363)
++..++..+-+- .......++..+ ..+.+|.+.+...+-
T Consensus 151 -----~~KtLe~t~f~g--~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 151 -----VRKTLESTGFDG--NSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred -----HHHHHHhcCcCC--CCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 444444432110 001123344444 778888887776553
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.6e-08 Score=81.08 Aligned_cols=60 Identities=25% Similarity=0.273 Sum_probs=39.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccC-----CCCCce-eeEeEEEEeeCCcEEEEEeCCCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~-----~~~~t~-~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (363)
..++++|.+|+|||||||.|.+......+.. .|..|+ ....+.. .+ ..++||||+.....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~~--~~liDtPG~~~~~l 186 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---HG--GLIADTPGFNEFGL 186 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---CC--cEEEeCCCccccCC
Confidence 5899999999999999999998754332211 122333 3333332 22 26999999987554
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-07 Score=79.26 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999999865
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=81.68 Aligned_cols=61 Identities=30% Similarity=0.329 Sum_probs=38.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccC-----CCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
+..++|+|++|+|||||+|+|+|......+.. .|..|+.. ...+.. .+ ...++||||+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~-~~~~~~-~~-~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTH-VELYDL-PG-GGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCccccc-EEEEEc-CC-CcEEEECCCcCcc
Confidence 45899999999999999999998765332211 12223321 122222 21 2369999998753
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.1e-08 Score=83.27 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=66.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee--CCcEEEEEeCCCCC---CCCCChHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLF---DLSAGSEFVGKEIV 94 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~---~~~~~~~~~~~~~~ 94 (363)
-+|+|||+||+|||||++.|+|... +..|............+. .+..++--.||--+ .++...++ .+
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~----P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~----AR 685 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLD----PNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQE----AR 685 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCC----CCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHH----HH
Confidence 4999999999999999999999987 555544433333332221 12233333333100 01111222 22
Q ss_pred HHHhccC--CCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcchhhHHHHh
Q 017924 95 KCLGMAK--DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFL 161 (363)
Q Consensus 95 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~~~l~~~~ 161 (363)
.++..+. ..+|.|-+ . .++++.+.++.+....++.. -++|+ +|.+|+.+. ..|.+.+
T Consensus 686 K~LG~fGL~sHAHTiki----k-dLSGGQKaRValaeLal~~P---DvlILDEPTNNLDIESI--DALaEAI 747 (807)
T KOG0066|consen 686 KQLGTFGLASHAHTIKI----K-DLSGGQKARVALAELALGGP---DVLILDEPTNNLDIESI--DALAEAI 747 (807)
T ss_pred HHhhhhhhhhccceEee----e-ecCCcchHHHHHHHHhcCCC---CEEEecCCCCCcchhhH--HHHHHHH
Confidence 2222221 12343333 2 56788888888777767653 24444 677887655 4444333
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.7e-07 Score=73.01 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999865
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-07 Score=80.84 Aligned_cols=60 Identities=32% Similarity=0.367 Sum_probs=38.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccC-----CCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
.+++++|++|+|||||||+|+|......+.. .|..|+.. ...+.. .+ ...++||||+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~-~~~~~~-~~-~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTH-RELFPL-PG-GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccce-EEEEEc-CC-CCEEEECCCCCcc
Confidence 6899999999999999999998765332211 12222222 122222 21 2369999999653
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.3e-07 Score=76.56 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999999765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.3e-07 Score=76.90 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999999865
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.6e-07 Score=77.11 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 567999999999999999999999865
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-07 Score=74.93 Aligned_cols=149 Identities=12% Similarity=0.122 Sum_probs=79.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEE-----EeeCCcEEEEEeCCCCCCCCCChHHHH--
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG-- 90 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~l~DtpG~~~~~~~~~~~~-- 90 (363)
++.+++|||++|||||||.++|+|-.. ++.|.++.......- .......+++-|--+-..+..+-+++.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~----p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~E 107 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK----PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSE 107 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC----CCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhh
Confidence 567999999999999999999999887 555655554421111 011233444444444333222211111
Q ss_pred -----------HHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcchhh
Q 017924 91 -----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKT 156 (363)
Q Consensus 91 -----------~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~~~ 156 (363)
+.+...+... +.+.-++ ...-+.++++++.++...+.+.-.. .++|+ ++.+|..-- .
T Consensus 108 pl~~~~~~~~~~~i~~~L~~V--gL~~~~l-~R~P~eLSGGQ~QRiaIARAL~~~P---klLIlDEptSaLD~siQ--a- 178 (252)
T COG1124 108 PLRPHGLSKSQQRIAELLDQV--GLPPSFL-DRRPHELSGGQRQRIAIARALIPEP---KLLILDEPTSALDVSVQ--A- 178 (252)
T ss_pred hhccCCccHHHHHHHHHHHHc--CCCHHHH-hcCchhcChhHHHHHHHHHHhccCC---CEEEecCchhhhcHHHH--H-
Confidence 1122222111 1111111 1122478999999999998886552 34443 455554321 2
Q ss_pred HHHHhccCCCchHHHHHHhcCCceEEecCC
Q 017924 157 LEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (363)
Q Consensus 157 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (363)
+.++- +.++-+..+..|+++.++
T Consensus 179 --~Ilnl-----L~~l~~~~~lt~l~IsHd 201 (252)
T COG1124 179 --QILNL-----LLELKKERGLTYLFISHD 201 (252)
T ss_pred --HHHHH-----HHHHHHhcCceEEEEeCc
Confidence 23333 444556666677776665
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-07 Score=88.76 Aligned_cols=121 Identities=19% Similarity=0.106 Sum_probs=68.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee------------EeEEEEeeCCcEEEEEeCC----CCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC------------EMKTTVLKDGQVVNVIDTP----GLFD 81 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~------------~~~~~~~~~~~~~~l~Dtp----G~~~ 81 (363)
++.+|+|+|++|||||||++.|+|... +..|.+..+. .+.++ .+..+.+-+|. -++.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~----p~~G~I~i~g~~i~~~~~~lr~~i~~V---~Q~~~lF~~TI~eNI~~g~ 432 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLD----PLQGEVTLDGVSVSSLQDELRRRISVF---AQDAHLFDTTVRDNLRLGR 432 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEEhhhHHHHHHhheEEE---ccCcccccccHHHHHhccC
Confidence 567999999999999999999998876 5556555433 12222 12222222222 2222
Q ss_pred CCCChHHHHHHHHHH-----HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCC
Q 017924 82 LSAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDL 150 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~ 150 (363)
...+++++.+.+... +.....+.|..+ .+.+.++++++++++...+.++... +++++ +..+|..
T Consensus 433 ~~~~~e~i~~al~~a~l~~~i~~lp~GldT~i--ge~G~~LSGGQrQRiaiARall~~~---~iliLDE~TSaLD~~ 504 (529)
T TIGR02868 433 PDATDEELWAALERVGLADWLRSLPDGLDTVL--GEGGARLSGGERQRLALARALLADA---PILLLDEPTEHLDAG 504 (529)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCcccccchh--ccccCcCCHHHHHHHHHHHHHhcCC---CEEEEeCCcccCCHH
Confidence 223444444333321 111112223322 2233479999999999999988754 56665 5566644
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.5e-07 Score=74.36 Aligned_cols=107 Identities=19% Similarity=0.159 Sum_probs=53.8
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHH-HHHHHhccccccceEEEEeCC
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFGKNVFDYMIVVFTGG 147 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~i~v~n~~ 147 (363)
+.+.|+.|.|.+.. .-++. .-+|.+++|.... .+.+.+.++ -+.++ .-++|+||.
T Consensus 122 ~D~IiiETVGvGQs-------E~~I~-------~~aD~~v~v~~Pg---~GD~iQ~~KaGimEi-------aDi~vVNKa 177 (266)
T PF03308_consen 122 FDVIIIETVGVGQS-------EVDIA-------DMADTVVLVLVPG---LGDEIQAIKAGIMEI-------ADIFVVNKA 177 (266)
T ss_dssp -SEEEEEEESSSTH-------HHHHH-------TTSSEEEEEEESS---TCCCCCTB-TTHHHH--------SEEEEE--
T ss_pred CCEEEEeCCCCCcc-------HHHHH-------HhcCeEEEEecCC---CccHHHHHhhhhhhh-------ccEEEEeCC
Confidence 44678899998762 11121 2358888887653 111111111 12222 457888999
Q ss_pred CCCCcchhhHHHHhccCCCchHHHHHHhcCCceE-EecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 148 DDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV-LFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 148 D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
|.... +..... ++..+.......- ....+..+++..+.++.+|++.|.+...
T Consensus 178 D~~gA-----~~~~~~-----l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 178 DRPGA-----DRTVRD-----LRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp SHHHH-----HHHHHH-----HHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ChHHH-----HHHHHH-----HHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 94322 333333 4445544332111 1112346677788999999998877543
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-07 Score=77.92 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++.+++|+|+||+|||||+++|+|... +..|.++.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~----~~~G~i~~ 70 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLH----VESGQIQI 70 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC----CCCeeEEE
Confidence 457999999999999999999999865 44454443
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.1e-07 Score=70.57 Aligned_cols=36 Identities=31% Similarity=0.384 Sum_probs=29.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
..+.+|+|+|++|+|||||+|.|+|... +..|.+.+
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~----P~~G~i~i 58 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFET----PASGEILI 58 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccC----CCCceEEE
Confidence 4557999999999999999999999876 55554444
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.5e-06 Score=81.07 Aligned_cols=44 Identities=16% Similarity=-0.011 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcchhhHHHHhcc
Q 017924 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~~~l~~~~~~ 163 (363)
..+|++++.++.+...++... .++|+ +|++|.... .++.+++..
T Consensus 155 ~~LSgGekqRv~LAraL~~~P---~lLLLDEPt~~LD~~~~--~~L~~~L~~ 201 (635)
T PRK11147 155 SSLSGGWLRKAALGRALVSNP---DVLLLDEPTNHLDIETI--EWLEGFLKT 201 (635)
T ss_pred hhcCHHHHHHHHHHHHHhcCC---CEEEEcCCCCccCHHHH--HHHHHHHHh
Confidence 478999999999998887653 45555 799998765 677766655
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.8e-06 Score=71.86 Aligned_cols=126 Identities=18% Similarity=0.211 Sum_probs=66.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccc------cccCC-CC----------CceeeEeEEEE---------------
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK------ASAGS-SG----------VTKTCEMKTTV--------------- 64 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~------~~~~~-~~----------~t~~~~~~~~~--------------- 64 (363)
..+..|+|+|+||+||||++..|++...-. ..... +. ......+....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 456799999999999999999987543200 00000 00 00001111000
Q ss_pred -eeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc----cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccc
Q 017924 65 -LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM----AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139 (363)
Q Consensus 65 -~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 139 (363)
...+..+.+|||+|.... +.....++...... ....++..++|++++. ..............++ .
T Consensus 192 ~~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~--g~~~~~~a~~f~~~~~-----~ 261 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT--GQNALSQAKAFHEAVG-----L 261 (318)
T ss_pred HHhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC--ChHHHHHHHHHHhhCC-----C
Confidence 013446789999997653 33333444443321 1234677889998862 2222222222222222 4
Q ss_pred eEEEEeCCCCCCc
Q 017924 140 MIVVFTGGDDLED 152 (363)
Q Consensus 140 ~i~v~n~~D~~~~ 152 (363)
.-+|+||+|....
T Consensus 262 ~giIlTKlD~t~~ 274 (318)
T PRK10416 262 TGIILTKLDGTAK 274 (318)
T ss_pred CEEEEECCCCCCC
Confidence 5688899996644
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-07 Score=82.66 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..+.+|+|||+||+||||++..|++.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999988875
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.5e-07 Score=83.03 Aligned_cols=166 Identities=18% Similarity=0.213 Sum_probs=103.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-----------------CCcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~l~DtpG~~~~ 82 (363)
..++|+|+..+|||-|+..|.|.+...+ ..|++|....-.++... .-..+.+|||||...
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqeg--eaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs- 552 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEG--EAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES- 552 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccc--cccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh-
Confidence 5899999999999999999998776332 23344433222222110 112467999999443
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc-----c----
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-----H---- 153 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~-----~---- 153 (363)
|.+.-.++..-+|..|+|+|+-|.+.......+.+|+.. .. |+||.+||+|.+-. .
T Consensus 553 ----------FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~r---kt--pFivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 553 ----------FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMR---KT--PFIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred ----------hhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhc---CC--CeEEeehhhhhhcccccCCCchHH
Confidence 444444455567999999999888888777777777654 22 89999999997632 0
Q ss_pred -------hhhHHHHhccCCCchHHHHHHhcC----CceEEecC--------CCcccccchhHHHHHHHHHHHHH
Q 017924 154 -------EKTLEDFLGHECPKPLKEILQLCD----NRCVLFDN--------KTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 154 -------~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.....+|-.+ +..++..+. +..+.|.+ ..++|+..+.++-.|+.+|-.+.
T Consensus 618 ~~lkkQ~k~v~~EF~~R-----~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKER-----LNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HHHHHhhHHHHHHHHHH-----HHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 1122223333 444433321 11111211 23577888999999988876653
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.8e-07 Score=76.70 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=28.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~----p~~G~i~~ 58 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK----PDEGDIEI 58 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----CCCCeEEE
Confidence 567999999999999999999999876 55555443
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-07 Score=77.85 Aligned_cols=27 Identities=37% Similarity=0.493 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999999765
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.9e-07 Score=73.34 Aligned_cols=141 Identities=17% Similarity=0.247 Sum_probs=84.3
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcccc---------ccc-----ccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCC
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKA---------FKA-----SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~---------~~~-----~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 80 (363)
.+.+..+|+.||+...|||||..+|++... |.. ..-..++|+...-..+.. .++.+..+|.||.-
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHa 86 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHA 86 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChH
Confidence 346678999999999999999999874321 100 011244555443333333 67788899999965
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHH
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF 160 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~ 160 (363)
|. +...|..+ ..-|..|+|+.+++.--...+..+-+ ....|-. .+++++||+|..++ ..+.+.
T Consensus 87 DY------vKNMItgA-----aqmDgAILVVsA~dGpmPqTrEHiLl-arqvGvp---~ivvflnK~Dmvdd--~ellel 149 (394)
T COG0050 87 DY------VKNMITGA-----AQMDGAILVVAATDGPMPQTREHILL-ARQVGVP---YIVVFLNKVDMVDD--EELLEL 149 (394)
T ss_pred HH------HHHHhhhH-----HhcCccEEEEEcCCCCCCcchhhhhh-hhhcCCc---EEEEEEecccccCc--HHHHHH
Confidence 41 22233322 24577888887764444444444332 2334432 57778999999975 444444
Q ss_pred hccCCCchHHHHHHhcC
Q 017924 161 LGHECPKPLKEILQLCD 177 (363)
Q Consensus 161 ~~~~~~~~~~~~~~~~~ 177 (363)
+.. ..++++...+
T Consensus 150 Vem----EvreLLs~y~ 162 (394)
T COG0050 150 VEM----EVRELLSEYG 162 (394)
T ss_pred HHH----HHHHHHHHcC
Confidence 332 2666666643
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.5e-07 Score=76.89 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999865
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-07 Score=74.35 Aligned_cols=58 Identities=28% Similarity=0.413 Sum_probs=38.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 80 (363)
...+++++|.+|+|||||+|.|++.......... ..|..... +.. + ..+.++||||+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~-~~T~~~~~--~~~-~-~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKP-GVTKGIQW--IKI-S-PGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCC-CEEeeeEE--EEe-c-CCEEEEECCCCC
Confidence 3468999999999999999999986642222222 22333332 222 2 567899999974
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.9e-07 Score=80.07 Aligned_cols=117 Identities=17% Similarity=0.235 Sum_probs=73.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhh--cccccccc------------------cCCCCCceeeEeEEEEeeCCcEEEEEeCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL--GRKAFKAS------------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~--g~~~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG 78 (363)
..+.+||-++.||||||-..|+ |......+ ....++++...+-.+.+ ++..++++||||
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDTPG 90 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDTPG 90 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCCCC
Confidence 3689999999999999997654 22111000 11133444444444555 788999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..|... +..+-+ .-+|+.+.|+|+...+....+..++ +.++.+- |++-++||+|....
T Consensus 91 HeDFSE---DTYRtL--------tAvDsAvMVIDaAKGiE~qT~KLfe-VcrlR~i----PI~TFiNKlDR~~r 148 (528)
T COG4108 91 HEDFSE---DTYRTL--------TAVDSAVMVIDAAKGIEPQTLKLFE-VCRLRDI----PIFTFINKLDREGR 148 (528)
T ss_pred ccccch---hHHHHH--------HhhheeeEEEecccCccHHHHHHHH-HHhhcCC----ceEEEeeccccccC
Confidence 888532 212222 2358899999987455444443333 2233332 89999999998866
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1e-06 Score=69.25 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=67.6
Q ss_pred cEEEEEcCCCCchHHHHHHhh-cccccccccCCCCCce-eeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSIL-GRKAFKASAGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~-g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..|.++|..++|||+|+=.|. |.. .+++|. ......+.. +...+++||.||... +...+...+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~-------~~TvtSiepn~a~~r~-gs~~~~LVD~PGH~r-------lR~kl~e~~ 103 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSH-------RGTVTSIEPNEATYRL-GSENVTLVDLPGHSR-------LRRKLLEYL 103 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCc-------cCeeeeeccceeeEee-cCcceEEEeCCCcHH-------HHHHHHHHc
Confidence 589999999999999995554 322 122222 222222333 455678999999543 233344433
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHH----HHHhccccccceEEEEeCCCCCCc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRL----PNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
... ..+-+++||+|.. -+..+-+..-+.+ ....+.....+++|+-||-|+...
T Consensus 104 ~~~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 104 KHN-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred ccc-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 322 3678999999876 4444433333332 222112222378888899998765
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.7e-07 Score=70.29 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.5e-07 Score=74.36 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999999865
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.4e-07 Score=75.24 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 457999999999999999999999865
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.8e-07 Score=72.90 Aligned_cols=128 Identities=17% Similarity=0.174 Sum_probs=72.0
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC---ChHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA---GSEFVGKE 92 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~ 92 (363)
......++++|.+++|||||||.++......-........+.+ +. .+.-+..++++|.||++.... ...+....
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~-in--~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQA-IN--HFHVGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCcccee-ee--eeeccceEEEEecCCcccccCCccCcchHhHh
Confidence 3445799999999999999999998554311111111111111 11 111366788999999554322 12222333
Q ss_pred HHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
...++... ...-.++++++++-.+..-+...++++.+. .+ |+.+|+||+|....
T Consensus 210 t~~Y~leR-~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~---~V--P~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 210 TKSYLLER-ENLVRVFLLVDASVPIQPTDNPEIAWLGEN---NV--PMTSVFTKCDKQKK 263 (320)
T ss_pred HHHHHHhh-hhhheeeeeeeccCCCCCCChHHHHHHhhc---CC--CeEEeeehhhhhhh
Confidence 33333222 233344455565545555566666666553 22 89999999998754
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.7e-07 Score=73.42 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
++..++|+|+||+|||||+++|+|..
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999999986
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.6e-07 Score=75.86 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999765
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.4e-07 Score=70.27 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=27.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t 55 (363)
++.+++|+|+||+|||||+++|+|... +..|.+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 59 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP----WGSGRIG 59 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEE
Confidence 457999999999999999999999865 4445443
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.4e-07 Score=77.17 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++..++|+|+||+|||||+++|+|...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3557999999999999999999999765
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.1e-07 Score=76.33 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999999865
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.1e-07 Score=74.44 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|+|+||+|||||+++|+|...
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999998865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-07 Score=77.34 Aligned_cols=28 Identities=36% Similarity=0.404 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++..++|+|+||+|||||+++|+|...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3557899999999999999999999865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.2e-07 Score=79.26 Aligned_cols=163 Identities=19% Similarity=0.207 Sum_probs=97.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhccccc-----------c--cccCCCCCceeeEeEEEEee----CCcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAF-----------K--ASAGSSGVTKTCEMKTTVLK----DGQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~-----------~--~~~~~~~~t~~~~~~~~~~~----~~~~~~l~DtpG~~~~ 82 (363)
.+..||.+-..|||||.+.|+....- . -..-.+++|+..+-....+. ..+.++++||||.-|+
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 57889999999999999988632210 0 00123566776655444332 2367899999998875
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~ 162 (363)
. ++ ..+.+. -+.+.++|+|++..........+-+..+ .+ .-++-|+||+|+-..+ .+....
T Consensus 90 s---YE----VSRSLA----ACEGalLvVDAsQGveAQTlAN~YlAle---~~--LeIiPViNKIDLP~Ad---pervk~ 150 (603)
T COG0481 90 S---YE----VSRSLA----ACEGALLVVDASQGVEAQTLANVYLALE---NN--LEIIPVLNKIDLPAAD---PERVKQ 150 (603)
T ss_pred E---EE----ehhhHh----hCCCcEEEEECccchHHHHHHHHHHHHH---cC--cEEEEeeecccCCCCC---HHHHHH
Confidence 2 22 222222 3467788889875554444333322222 12 2577889999987652 222222
Q ss_pred cCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHcC
Q 017924 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (363)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 212 (363)
. +.+++..-.. .....|++++.++.++++.|-..+....
T Consensus 151 e-----Ie~~iGid~~------dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 151 E-----IEDIIGIDAS------DAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred H-----HHHHhCCCcc------hheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 2 3334332111 2235688999999999999888775443
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.7e-07 Score=78.11 Aligned_cols=109 Identities=18% Similarity=0.103 Sum_probs=58.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-----------EEEe--eCCcEEEEEeCCCCCCC--
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-----------TTVL--KDGQVVNVIDTPGLFDL-- 82 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-----------~~~~--~~~~~~~l~DtpG~~~~-- 82 (363)
++..++|+|++|||||||+++|+|-.. ++.|.+.+..... .+.+ .-..++++.|..+|.-.
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~----~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~ 103 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEE----PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR 103 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC
Confidence 456899999999999999999999887 5555544432221 1111 00123334444443321
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK 134 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~ 134 (363)
.....++.+.+....... +++.++--. . ..+++++++++.+.+.+...
T Consensus 104 ~~~k~ei~~rV~eva~~L--~l~~lL~r~-P-~~LSGGQrQRVAlaRAlVr~ 151 (338)
T COG3839 104 GVPKAEIDKRVKEVAKLL--GLEHLLNRK-P-LQLSGGQRQRVALARALVRK 151 (338)
T ss_pred CCchHHHHHHHHHHHHHc--CChhHHhcC-c-ccCChhhHHHHHHHHHHhcC
Confidence 112333333333332211 111111111 1 36888888888888877665
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=98.52 E-value=7e-07 Score=74.82 Aligned_cols=36 Identities=28% Similarity=0.319 Sum_probs=28.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
.++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 64 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLER----PTSGSVLV 64 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEE
Confidence 3567999999999999999999999875 44454443
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.8e-07 Score=80.34 Aligned_cols=61 Identities=25% Similarity=0.243 Sum_probs=41.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (363)
..+++|||-+++|||||||+|+|..... .+..+.++..... +. -+..+.++||||+.-...
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~--~s~~PG~Tk~~q~-i~--~~~~i~LlDtPGii~~~~ 192 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAK--TSNRPGTTKGIQW-IK--LDDGIYLLDTPGIIPPKF 192 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhccccee--eCCCCceecceEE-EE--cCCCeEEecCCCcCCCCc
Confidence 3689999999999999999999998732 3333333322221 11 234477999999876543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1e-06 Score=71.52 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=29.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
+.+..|+|+|++|||||||+|.|.|-+. ++.|.+..
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~----pt~G~v~i 64 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDK----PTSGEVLI 64 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC----CCCceEEE
Confidence 3557999999999999999999998877 55554444
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.7e-07 Score=76.39 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 457999999999999999999998765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.2e-07 Score=74.48 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999875
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.4e-07 Score=75.69 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999865
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.7e-07 Score=74.25 Aligned_cols=27 Identities=41% Similarity=0.514 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999999865
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.5e-07 Score=75.89 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 557999999999999999999999875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-07 Score=88.62 Aligned_cols=121 Identities=18% Similarity=0.155 Sum_probs=70.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-------------EEEEeeCCc--EEEEEeCCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-------------KTTVLKDGQ--VVNVIDTPGLFDL 82 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-------------~~~~~~~~~--~~~l~DtpG~~~~ 82 (363)
++.+|+|||++|||||||++.|+|-.. +..|.+..+..- ..+.+ +.. .-++.|..-+++.
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~----p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q-~~~Lf~gSI~eNi~l~~p 572 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYK----PQQGRILLDGVDLNDIDLASLRRQVGYVLQ-DPFLFSGSIRENIALGNP 572 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCEeHHhcCHHHHHhheeEEcc-cchhhcCcHHHHHhcCCC
Confidence 456999999999999999999998876 666655543221 11111 100 1112233333444
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEE---------EeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCC
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLV---------VFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDL 150 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---------v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~ 150 (363)
..+.+++.+.... + ++|.++. +.+.+..++++.+.++...+.+..+. +++++ ++++|..
T Consensus 573 ~~~~e~i~~A~~~----a--g~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P---~ILlLDEaTSaLD~~ 643 (709)
T COG2274 573 EATDEEIIEAAQL----A--GAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP---KILLLDEATSALDPE 643 (709)
T ss_pred CCCHHHHHHHHHH----h--CcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC---CEEEEeCcccccCHh
Confidence 4444443333222 1 2222221 22334589999999999999988764 45554 6777765
Q ss_pred Cc
Q 017924 151 ED 152 (363)
Q Consensus 151 ~~ 152 (363)
+.
T Consensus 644 sE 645 (709)
T COG2274 644 TE 645 (709)
T ss_pred HH
Confidence 44
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.2e-06 Score=68.39 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhh
Q 017924 17 NGERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
.+..+|+|.|.+|+|||||+..|.
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHH
Confidence 445799999999999999999885
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.3e-07 Score=79.99 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~ 54 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGLED 54 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456999999999999999999999875
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.9e-07 Score=75.99 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999999865
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.7e-08 Score=86.11 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHHhccccccceEEE----EeCCCCCCcchhhHHHHhcc
Q 017924 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~i~v----~n~~D~~~~~~~~l~~~~~~ 163 (363)
..|+++=+-.+.+.+.+|.. |-+++ +||+|...- .||+.|+..
T Consensus 197 ~slSGGWrMrlaLARAlf~~----pDlLLLDEPTNhLDv~av--~WLe~yL~t 243 (582)
T KOG0062|consen 197 KSLSGGWRMRLALARALFAK----PDLLLLDEPTNHLDVVAV--AWLENYLQT 243 (582)
T ss_pred cccCcchhhHHHHHHHHhcC----CCEEeecCCcccchhHHH--HHHHHHHhh
Confidence 37888888888888888876 45554 799998866 788877776
|
|
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.5e-07 Score=70.26 Aligned_cols=124 Identities=20% Similarity=0.254 Sum_probs=71.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc-ccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
...+|+++|.+|+||||+=-++.-.. .+. ...-+.|++..-....+.++-.+.++|..|.. ..+...+...
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D--~~rlg~tidveHsh~RflGnl~LnlwDcGgqe------~fmen~~~~q 74 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARD--TRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE------EFMENYLSSQ 74 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhh--hhccCCcceeeehhhhhhhhheeehhccCCcH------HHHHHHHhhc
Confidence 45799999999999999877665221 111 12223344444444444344567788888732 1222222222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH----HHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE----TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
-...+..++++++|+|+..+--..+. ..|+.+...... + .+++++.|.|+...
T Consensus 75 ~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~-A--kiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 75 EDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPE-A--KIFCLLHKMDLVQE 131 (295)
T ss_pred chhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCc-c--eEEEEEeechhccc
Confidence 23445678999999999733222222 233444433222 2 67788899999876
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.3e-07 Score=78.82 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=28.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... +..|.+..
T Consensus 31 ~Ge~~~llGpsGsGKSTLLr~IaGl~~----p~~G~I~~ 65 (351)
T PRK11432 31 QGTMVTLLGPSGCGKTTVLRLVAGLEK----PTEGQIFI 65 (351)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCC----CCceEEEE
Confidence 456999999999999999999999876 45554443
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.5e-07 Score=78.49 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=65.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEE-Eee------CCcEEEEEeCCCCCCCCCChHHH-
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLK------DGQVVNVIDTPGLFDLSAGSEFV- 89 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~------~~~~~~l~DtpG~~~~~~~~~~~- 89 (363)
.+..++|+|+||||||||+++|+|... ++.|.+......... ... .....++.+.++++....-.+.+
T Consensus 18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~----p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~ 93 (363)
T TIGR01186 18 KGEIFVIMGLSGSGKSTTVRMLNRLIE----PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTS 93 (363)
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC----CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHH
Confidence 457999999999999999999999876 555544443321100 000 11223355556555321111111
Q ss_pred -------------HHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCC
Q 017924 90 -------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLE 151 (363)
Q Consensus 90 -------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~ 151 (363)
.+.+...+... +.+. +....-..+++++++++.....+.... +++++ ++.+|...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~v--gL~~--~~~~~p~~LSGGq~QRV~lARAL~~~p---~iLLlDEP~saLD~~~ 164 (363)
T TIGR01186 94 LGPELLGWPEQERKEKALELLKLV--GLEE--YEHRYPDELSGGMQQRVGLARALAAEP---DILLMDEAFSALDPLI 164 (363)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhc--CCch--hhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEeCCcccCCHHH
Confidence 11111111111 1111 112222478999999999888887653 45554 55666543
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=73.53 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456999999999999999999999765
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.3e-07 Score=75.98 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=28.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~ 64 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLE----PDAGFATV 64 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC----CCCceEEE
Confidence 457999999999999999999999865 44454443
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.9e-07 Score=74.03 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 60 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLG----PTSGEVLV 60 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEE
Confidence 457999999999999999999999865 44454443
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.6e-07 Score=74.57 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999865
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=98.48 E-value=4e-07 Score=75.23 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999999865
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-06 Score=72.36 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567999999999999999999999865
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.2e-07 Score=78.54 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... +..|.+..
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~----p~~G~i~~ 52 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLLR----PTSGTARV 52 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEE
Confidence 457999999999999999999999865 44554443
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.5e-07 Score=78.44 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999765
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.9e-07 Score=78.33 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~ 49 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLTR 49 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999999865
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.4e-07 Score=76.34 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcccc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++|+|+||+|||||+++|+|...
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 999999999999999999999765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.5e-07 Score=75.09 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 61 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEM----PRSGTLNI 61 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEE
Confidence 557999999999999999999999865 44454443
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-06 Score=73.22 Aligned_cols=27 Identities=30% Similarity=0.262 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 457999999999999999999999765
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.1e-07 Score=73.72 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999999865
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.8e-07 Score=74.38 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999999865
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.9e-07 Score=70.21 Aligned_cols=57 Identities=28% Similarity=0.349 Sum_probs=38.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (363)
...+++++|.+|+|||||+|.|.+..........+ .|...+ .+. .+..+.++||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~-~t~~~~--~~~--~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPG-YTKGEQ--LVK--ITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCC-eeeeeE--EEE--cCCCEEEEECcCC
Confidence 34689999999999999999999766433333333 232222 111 2346789999995
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-06 Score=78.00 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~ 48 (354)
T TIGR02142 22 GQGVTAIFGRSGSGKTTLIRLIAGLTR 48 (354)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999999865
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.1e-07 Score=79.50 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=28.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... ++.|.+.+
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~----p~~G~i~i 100 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGMTS----PDAGKITV 100 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC----CCceEEEE
Confidence 467999999999999999999999876 55554443
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.2e-06 Score=79.34 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|+|+||||||||+++|+|...
T Consensus 32 ~Ge~~~iiG~NGsGKSTLlk~i~G~~~ 58 (556)
T PRK11819 32 PGAKIGVLGLNGAGKSTLLRIMAGVDK 58 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999999865
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.4e-07 Score=73.54 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456999999999999999999999865
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.3e-07 Score=78.45 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... ++.|.+.+
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~----p~~G~v~i 66 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTH----PDAGSISL 66 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEE
Confidence 456899999999999999999999876 55554443
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.9e-06 Score=80.06 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|+|+||||||||+++|+|...
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 52 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDLE 52 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999765
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=77.84 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 457999999999999999999999875
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.2e-07 Score=79.48 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=27.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... +..|.+..
T Consensus 29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~----p~~G~I~~ 63 (356)
T PRK11650 29 DGEFIVLVGPSGCGKSTLLRMVAGLER----ITSGEIWI 63 (356)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCC----CCceEEEE
Confidence 456899999999999999999999876 44444433
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-07 Score=75.56 Aligned_cols=42 Identities=26% Similarity=0.257 Sum_probs=35.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT 62 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~ 62 (363)
..+.+|+|||.||||||||++.|+|... ++.|.+.+...+..
T Consensus 51 ~~Ge~vGiiG~NGaGKSTLlkliaGi~~----Pt~G~v~v~G~v~~ 92 (249)
T COG1134 51 YKGERVGIIGHNGAGKSTLLKLIAGIYK----PTSGKVKVTGKVAP 92 (249)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCccC----CCCceEEEcceEeh
Confidence 4567999999999999999999999987 88888777666653
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.6e-06 Score=74.12 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..|+|+|++|+||||++..|++..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999987653
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.4e-07 Score=73.01 Aligned_cols=35 Identities=31% Similarity=0.319 Sum_probs=29.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT 57 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~ 57 (363)
+-+++++|+|||||||+++.|+|... ++.|.+.+.
T Consensus 50 G~ivgflGaNGAGKSTtLKmLTGll~----p~~G~v~V~ 84 (325)
T COG4586 50 GEIVGFLGANGAGKSTTLKMLTGLLL----PTSGKVRVN 84 (325)
T ss_pred CcEEEEEcCCCCcchhhHHHHhCccc----cCCCeEEec
Confidence 46999999999999999999999987 666655543
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.4e-07 Score=85.49 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=70.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE----------EEeeCCcEEEEEeC----CCCCCC-
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT----------TVLKDGQVVNVIDT----PGLFDL- 82 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~----------~~~~~~~~~~l~Dt----pG~~~~- 82 (363)
++.+|+|+|++|+|||||+++|+|... +..|.+........ +.+..+....+-+| ..++..
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~----~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 432 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYE----PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE 432 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCC
Confidence 567999999999999999999999876 55555544331100 00001111112222 122221
Q ss_pred CCChHHHHHHHHHH-----HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 83 SAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 83 ~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
...++++.+.+... +.....+.|.. +.+.+..+++++++++...+.++... +++++ ++.+|....
T Consensus 433 ~~~~~~i~~~l~~~~l~~~i~~lp~gldt~--i~~~g~~LSgGqrQRiaLARall~~~---~illLDEpts~LD~~~~ 505 (571)
T TIGR02203 433 QADRAEIERALAAAYAQDFVDKLPLGLDTP--IGENGVLLSGGQRQRLAIARALLKDA---PILILDEATSALDNESE 505 (571)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcCcccce--ecCCCCcCCHHHHHHHHHHHHHhcCC---CEEEEeCccccCCHHHH
Confidence 22334433332221 11111233333 22334589999999999999988754 56665 677776544
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=7e-07 Score=85.37 Aligned_cols=124 Identities=16% Similarity=0.107 Sum_probs=67.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-------------eEEEEeeCCc--EEEEEeCCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-------------MKTTVLKDGQ--VVNVIDTPGLFDL 82 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-------------~~~~~~~~~~--~~~l~DtpG~~~~ 82 (363)
++.+|+|+|++|+|||||++.|+|... +..|.+..... +.++.+ +.. .-++-|...+...
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~----p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q-~~~lf~~Ti~~Ni~~~~~ 434 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFD----PQSGRILIDGTDIRTVTRASLRRNIAVVFQ-DAGLFNRSIEDNIRVGRP 434 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC----CCCCEEEECCEEhhhCCHHHHHhheEEEec-CcccccccHHHHHhcCCC
Confidence 557999999999999999999999876 55554443321 111111 100 0011111122222
Q ss_pred CCChHHHHHHHHH-----HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCC
Q 017924 83 SAGSEFVGKEIVK-----CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLE 151 (363)
Q Consensus 83 ~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~ 151 (363)
..++.++...+.. ++.....+.|..+ .+....+++++++++...+.++... +++++ ++.+|...
T Consensus 435 ~~~d~~i~~al~~~~l~~~i~~lp~gldt~i--~~~g~~LSgGq~QRialARall~~~---~iliLDEpts~LD~~t 506 (588)
T PRK13657 435 DATDEEMRAAAERAQAHDFIERKPDGYDTVV--GERGRQLSGGERQRLAIARALLKDP---PILILDEATSALDVET 506 (588)
T ss_pred CCCHHHHHHHHHHhCHHHHHHhCcccccchh--cCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCccCCCHHH
Confidence 2233443333222 1221222334332 2333479999999999999887754 56555 55666443
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.4e-07 Score=78.35 Aligned_cols=122 Identities=20% Similarity=0.165 Sum_probs=65.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccc--------ccccCC-CCC--------ceeeEeEEEE-----------ee--CC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAF--------KASAGS-SGV--------TKTCEMKTTV-----------LK--DG 68 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~--------~~~~~~-~~~--------t~~~~~~~~~-----------~~--~~ 68 (363)
..+|+|+|++|+||||++..|++.... ..+... +.. .....+.... .. .+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 469999999999999999998743210 000000 000 0000000000 00 12
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCC
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D 148 (363)
..+.||||+|... .+.....++.+.+... ..+.+++|++++ .-.......++.+.. ++ .--+|+||+|
T Consensus 321 ~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~--~PdevlLVLsAT-tk~~d~~~i~~~F~~-~~-----idglI~TKLD 388 (436)
T PRK11889 321 VDYILIDTAGKNY---RASETVEEMIETMGQV--EPDYICLTLSAS-MKSKDMIEIITNFKD-IH-----IDGIVFTKFD 388 (436)
T ss_pred CCEEEEeCccccC---cCHHHHHHHHHHHhhc--CCCeEEEEECCc-cChHHHHHHHHHhcC-CC-----CCEEEEEccc
Confidence 4678999999755 2334455565555433 356778888765 222222333333332 11 3457789999
Q ss_pred CCCc
Q 017924 149 DLED 152 (363)
Q Consensus 149 ~~~~ 152 (363)
....
T Consensus 389 ET~k 392 (436)
T PRK11889 389 ETAS 392 (436)
T ss_pred CCCC
Confidence 8765
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.8e-07 Score=79.86 Aligned_cols=61 Identities=23% Similarity=0.253 Sum_probs=39.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccc---cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFK---ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
+.+|+|||.+|+|||||||+|++..... ...+..+.|+.... .+.. +..+.++||||+...
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~-~~~~--~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI-EIPL--DDGHSLYDTPGIINS 217 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE-EEEe--CCCCEEEECCCCCCh
Confidence 3689999999999999999999754210 12333344443322 2222 234569999999864
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=71.01 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
++..++|+|+||+|||||+++|+|..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999999864
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=80.08 Aligned_cols=115 Identities=23% Similarity=0.289 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhccccccc--c-------------cCCCCCceeeEeEEEEeeC----CcEEEEEeCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKA--S-------------AGSSGVTKTCEMKTTVLKD----GQVVNVIDTPGLF 80 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~--~-------------~~~~~~t~~~~~~~~~~~~----~~~~~l~DtpG~~ 80 (363)
.+|+|+|+-++|||+|++.|.++..-.. . ...+++++...-..+...+ .+-++++||||.-
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHV 208 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHV 208 (971)
T ss_pred EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcc
Confidence 5899999999999999999987653100 0 0112223222222222211 3457899999987
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
+. ..+..+.+ .-.|++++++|+.....-...+.++..... . .++++|+||+|.+
T Consensus 209 nF-------~DE~ta~l----~~sDgvVlvvDv~EGVmlntEr~ikhaiq~---~--~~i~vviNKiDRL 262 (971)
T KOG0468|consen 209 NF-------SDETTASL----RLSDGVVLVVDVAEGVMLNTERIIKHAIQN---R--LPIVVVINKVDRL 262 (971)
T ss_pred cc-------hHHHHHHh----hhcceEEEEEEcccCceeeHHHHHHHHHhc---c--CcEEEEEehhHHH
Confidence 64 22333333 245899999998766666665555544332 2 2899999999965
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.5e-07 Score=73.98 Aligned_cols=27 Identities=37% Similarity=0.410 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999999865
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.5e-07 Score=74.02 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++..++|+|+||+|||||+++|+|...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567999999999999999999999865
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.1e-06 Score=67.88 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 59 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRP----PASGEITL 59 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEE
Confidence 456999999999999999999999876 44454443
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.5e-07 Score=85.74 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=28.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
..+.+++|+|+||+|||||+++|+|... +..|.+..
T Consensus 363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl~~----p~~G~I~~ 398 (590)
T PRK13409 363 YEGEVIGIVGPNGIGKTTFAKLLAGVLK----PDEGEVDP 398 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEE
Confidence 3556999999999999999999999876 55554443
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.7e-07 Score=79.13 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
....|.|+|.+|||||||++.|++.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888765
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.5e-07 Score=76.38 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999999865
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=77.60 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=28.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... +..|.+..
T Consensus 29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~----p~~G~I~i 63 (353)
T TIGR03265 29 KGEFVCLLGPSGCGKTTLLRIIAGLER----QTAGTIYQ 63 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC----CCceEEEE
Confidence 457999999999999999999999876 55554444
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-06 Score=74.07 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 567999999999999999999999765
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-06 Score=71.86 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..++|+|+||+|||||+++|+|...
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 6899999999999999999999865
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.5e-06 Score=80.32 Aligned_cols=124 Identities=19% Similarity=0.173 Sum_probs=64.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccccc-CCCCCceeeE-------------eEE--EE-------------eeCCc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTKTCE-------------MKT--TV-------------LKDGQ 69 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~-~~~~~t~~~~-------------~~~--~~-------------~~~~~ 69 (363)
+.+|+|||+||+||||++..|++......+. ...-++.+.. ... +. ...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 4699999999999999999998654211100 0000000000 000 00 00234
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCC
Q 017924 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGD 148 (363)
Q Consensus 70 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D 148 (363)
.++||||+|.... +..+.+++..... ....+-+++|++++ . ...+. ..+..+....+.+ ..-+|+||+|
T Consensus 265 D~VLIDTAGRs~~---d~~l~eel~~l~~--~~~p~e~~LVLsAt-~-~~~~l~~i~~~f~~~~~~~---i~glIlTKLD 334 (767)
T PRK14723 265 HLVLIDTVGMSQR---DRNVSEQIAMLCG--VGRPVRRLLLLNAA-S-HGDTLNEVVHAYRHGAGED---VDGCIITKLD 334 (767)
T ss_pred CEEEEeCCCCCcc---CHHHHHHHHHHhc--cCCCCeEEEEECCC-C-cHHHHHHHHHHHhhcccCC---CCEEEEeccC
Confidence 5789999997652 3334444444332 22456678888875 1 12222 2223332211111 3457789999
Q ss_pred CCCc
Q 017924 149 DLED 152 (363)
Q Consensus 149 ~~~~ 152 (363)
....
T Consensus 335 Et~~ 338 (767)
T PRK14723 335 EATH 338 (767)
T ss_pred CCCC
Confidence 8765
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.1e-06 Score=69.23 Aligned_cols=72 Identities=24% Similarity=0.198 Sum_probs=43.1
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCC
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D 148 (363)
..+.+|||+|... .+.....++...+... ..+-+++|++++ ....+...+......++ .--+++||+|
T Consensus 84 ~D~vlIDT~Gr~~---~d~~~~~el~~~~~~~--~~~~~~LVlsa~--~~~~~~~~~~~~~~~~~-----~~~lIlTKlD 151 (196)
T PF00448_consen 84 YDLVLIDTAGRSP---RDEELLEELKKLLEAL--NPDEVHLVLSAT--MGQEDLEQALAFYEAFG-----IDGLILTKLD 151 (196)
T ss_dssp SSEEEEEE-SSSS---THHHHHHHHHHHHHHH--SSSEEEEEEEGG--GGGHHHHHHHHHHHHSS-----TCEEEEESTT
T ss_pred CCEEEEecCCcch---hhHHHHHHHHHHhhhc--CCccceEEEecc--cChHHHHHHHHHhhccc-----CceEEEEeec
Confidence 4578999999775 3444556666655444 567888888875 22233333333333333 2346789999
Q ss_pred CCCc
Q 017924 149 DLED 152 (363)
Q Consensus 149 ~~~~ 152 (363)
....
T Consensus 152 et~~ 155 (196)
T PF00448_consen 152 ETAR 155 (196)
T ss_dssp SSST
T ss_pred CCCC
Confidence 8765
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.7e-06 Score=77.52 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... +..|.+..
T Consensus 53 ~Gei~~LvG~NGsGKSTLLr~I~Gl~~----p~sG~I~i 87 (400)
T PRK10070 53 EGEIFVIMGLSGSGKSTMVRLLNRLIE----PTRGQVLI 87 (400)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC----CCCCEEEE
Confidence 457999999999999999999999875 44554433
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.5e-06 Score=67.86 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 456999999999999999999999865
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.6e-07 Score=75.14 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457899999999999999999999765
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.1e-07 Score=80.03 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 28 ~Geiv~liGpNGaGKSTLLk~LaGll~ 54 (402)
T PRK09536 28 EGSLVGLVGPNGAGKTTLLRAINGTLT 54 (402)
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 557899999999999999999999765
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-06 Score=73.79 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999999865
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2e-06 Score=73.57 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999999865
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.4e-07 Score=73.78 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~----p~~G~v~~ 60 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLAR----PDAGEVLW 60 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEE
Confidence 456999999999999999999999865 44454443
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-06 Score=71.14 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999999765
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=73.92 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=29.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT 57 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~ 57 (363)
++.+++|+|+||+|||||+++|+|... +..|.+...
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~----p~~G~I~~~ 84 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSLS----PTVGKVDRN 84 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC----CCceEEEEC
Confidence 567999999999999999999999876 455554443
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=72.71 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999865
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-05 Score=81.21 Aligned_cols=123 Identities=18% Similarity=0.238 Sum_probs=73.9
Q ss_pred EEEEEcCCCCchHHHHHHhhccccccccc------CC-CCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCC----hHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASA------GS-SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG----SEFV 89 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~------~~-~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~----~~~~ 89 (363)
-.+|||++|+||||||+.. |... .... .. ...|..|... -....+++||.|......+ +...
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~~~~t~~c~ww-----f~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRGVGGTRNCDWW-----FTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCC-cCchhhccccccCCCCCcccceE-----ecCCEEEEcCCCccccCCCcccccHHH
Confidence 6789999999999999866 4432 1111 00 1112222222 2234459999996644321 2233
Q ss_pred HHHHHHHHhcc--CCCccEEEEEeecCCCCC--H--------HHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 90 GKEIVKCLGMA--KDGIHAFLVVFSVTNRFS--Q--------EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 90 ~~~~~~~~~~~--~~~~~~~l~v~~~~~~~~--~--------~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
...+...+... ...++++|+++++..-+. . .-+.++..+...+|-.. ||.||+||+|.+..
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~--PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARF--PVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEEecchhhcC
Confidence 44555555444 345799999999873332 2 22334555666666555 99999999999855
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.4e-06 Score=71.49 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999999876
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.3e-06 Score=71.87 Aligned_cols=27 Identities=30% Similarity=0.261 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 557999999999999999999999865
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-06 Score=75.75 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... ++.|.+..
T Consensus 30 ~Gei~gIiG~sGaGKSTLlr~I~gl~~----p~~G~I~i 64 (343)
T TIGR02314 30 AGQIYGVIGASGAGKSTLIRCVNLLER----PTSGSVIV 64 (343)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEE
Confidence 456899999999999999999998876 45554443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.9e-07 Score=74.15 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=27.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t 55 (363)
++..++|+|+||+|||||+++|+|... ++.|.+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~ 60 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELR----PTSGTAY 60 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEE
Confidence 456999999999999999999999865 4445443
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.4e-07 Score=72.41 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++.+++|+|+||+|||||+++|+|...
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567999999999999999999999865
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=73.10 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=33.6
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHH---HhccccccceEEEEeC
Q 017924 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN---LFGKNVFDYMIVVFTG 146 (363)
Q Consensus 70 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~i~v~n~ 146 (363)
.+.++||||..... ..+.....+...+.. ...-++++++|.. .++......-..+.. .+.-+ .|.+.|+||
T Consensus 92 ~y~l~DtPGQiElf-~~~~~~~~i~~~L~~--~~~~~~v~LvD~~-~~~~~~~f~s~~L~s~s~~~~~~--lP~vnvlsK 165 (238)
T PF03029_consen 92 DYLLFDTPGQIELF-THSDSGRKIVERLQK--NGRLVVVFLVDSS-FCSDPSKFVSSLLLSLSIMLRLE--LPHVNVLSK 165 (238)
T ss_dssp SEEEEE--SSHHHH-HHSHHHHHHHHTSSS------EEEEEE-GG-G-SSHHHHHHHHHHHHHHHHHHT--SEEEEEE--
T ss_pred cEEEEeCCCCEEEE-EechhHHHHHHHHhh--hcceEEEEEEecc-cccChhhHHHHHHHHHHHHhhCC--CCEEEeeec
Confidence 46799999954321 111223344444433 3456778888876 444322222111111 11112 299999999
Q ss_pred CCCCCc
Q 017924 147 GDDLED 152 (363)
Q Consensus 147 ~D~~~~ 152 (363)
+|+...
T Consensus 166 ~Dl~~~ 171 (238)
T PF03029_consen 166 IDLLSK 171 (238)
T ss_dssp GGGS-H
T ss_pred cCcccc
Confidence 999873
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-06 Score=73.08 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999999865
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=85.69 Aligned_cols=123 Identities=13% Similarity=0.093 Sum_probs=67.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-------------EEEEeeCCcEE---EEEeCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-------------KTTVLKDGQVV---NVIDTPGLFD 81 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-------------~~~~~~~~~~~---~l~DtpG~~~ 81 (363)
++.+|+|+|++|||||||++.|+|... +..|.+..+..- ..+.+ +..+ ++-|...++.
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~----p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q--~~~lf~gTI~eNi~~~~ 551 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFET----PESGSVFYDGQDLAGLDVQAVRRQLGVVLQ--NGRLMSGSIFENIAGGA 551 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCEEEECCEEcCcCCHHHHHhccEEEcc--CCccCcccHHHHHhcCC
Confidence 467999999999999999999999876 556655443321 11111 1000 1111111222
Q ss_pred CCCChHHHHHHHHHH-----HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 82 LSAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
. .+++++.+.+... +.....+.|..+ .+.+..+++++++++...+.++.+. +++++ ++.+|....
T Consensus 552 ~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~i--ge~G~~LSGGQrQRialARAll~~p---~iLiLDEpTS~LD~~te 624 (686)
T TIGR03797 552 P-LTLDEAWEAARMAGLAEDIRAMPMGMHTVI--SEGGGTLSGGQRQRLLIARALVRKP---RILLFDEATSALDNRTQ 624 (686)
T ss_pred C-CCHHHHHHHHHHcCcHHHHHhccccccccc--cCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCccCCCHHHH
Confidence 2 2333333332221 111111223322 2333589999999999999988764 56665 567775544
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-06 Score=71.67 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 61 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLP----PAAGTIKL 61 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEE
Confidence 467999999999999999999999865 44454443
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-06 Score=74.31 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999999865
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-06 Score=74.16 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... +..|.+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~----p~~G~i~~ 66 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINALLK----PTTGTVTV 66 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEE
Confidence 457999999999999999999999865 44454443
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-06 Score=73.33 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... +..|.++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~ 59 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLP----PRSGSIRF 59 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEE
Confidence 567999999999999999999998865 44454443
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-06 Score=85.18 Aligned_cols=125 Identities=16% Similarity=0.108 Sum_probs=69.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-------------eEEEEeeCCc--EEEEEeCCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-------------MKTTVLKDGQ--VVNVIDTPGLFDL 82 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-------------~~~~~~~~~~--~~~l~DtpG~~~~ 82 (363)
++.+|+|+|++|+|||||++.|+|... +..|.+..+.. +.++.+ +.. .-++-|..-+++.
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl~~----p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q-~~~lf~gTi~eNi~l~~~ 578 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGLYQ----PWSGEILFDGIPREEIPREVLANSVAMVDQ-DIFLFEGTVRDNLTLWDP 578 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEeHHHCCHHHHHhheeEEec-CChhhhccHHHHhhCCCC
Confidence 467999999999999999999999876 55565554321 111111 100 0111122222222
Q ss_pred CCChHHHHHHHHHH-----HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 83 SAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 83 ~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
..+++++.+.+... +.....+.+..+ .+.+..+++++++++...+.++... +++++ ++.+|....
T Consensus 579 ~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i--~e~G~~LSGGQrQRiaLARall~~p---~iliLDEptS~LD~~te 651 (710)
T TIGR03796 579 TIPDADLVRACKDAAIHDVITSRPGGYDAEL--AEGGANLSGGQRQRLEIARALVRNP---SILILDEATSALDPETE 651 (710)
T ss_pred CCCHHHHHHHHHHhCCHHHHHhCcCccccee--ccCCCCCCHHHHHHHHHHHHHhhCC---CEEEEECccccCCHHHH
Confidence 23344443333221 111112333332 2334589999999999999888764 56665 567775443
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=71.50 Aligned_cols=27 Identities=19% Similarity=0.243 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999999765
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-06 Score=72.18 Aligned_cols=27 Identities=37% Similarity=0.450 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 557999999999999999999999765
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.2e-06 Score=75.91 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 27 ~Ge~~~llGpsGsGKSTLLr~IaGl~~ 53 (353)
T PRK10851 27 SGQMVALLGPSGSGKTTLLRIIAGLEH 53 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999999865
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.8e-06 Score=67.44 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 457999999999999999999999865
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.7e-07 Score=73.52 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 557999999999999999999999765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-06 Score=82.61 Aligned_cols=134 Identities=13% Similarity=0.164 Sum_probs=76.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee-EeEEEE---------eeCCcEE----EEEeCCCCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTV---------LKDGQVV----NVIDTPGLFDL 82 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~-~~~~~~---------~~~~~~~----~l~DtpG~~~~ 82 (363)
.++.+++|||++|||||||+|.|.+-.. +..|.+..+. .+..+. +..+... ++-|...++..
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~----~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~ 428 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYD----PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP 428 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC----CCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCC
Confidence 3567999999999999999999997765 4455544421 111110 0011111 12222233333
Q ss_pred CCChHHHHHHHHHH-----HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcch
Q 017924 83 SAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHE 154 (363)
Q Consensus 83 ~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~ 154 (363)
..+++++.+.+... +.....+.|..+= +-+.++++++++++...+.+.... +++++ +...|..++
T Consensus 429 ~at~eei~~a~k~a~~~d~I~~lp~g~dt~vg--e~G~~LSgGQrQrlaiARall~~~---~ILILDEaTSalD~~tE-- 501 (567)
T COG1132 429 DATDEEIEEALKLANAHEFIANLPDGYDTIVG--ERGVNLSGGQRQRLAIARALLRNP---PILILDEATSALDTETE-- 501 (567)
T ss_pred CCCHHHHHHHHHHhChHHHHHhCcccccceec--CCCccCCHHHHHHHHHHHHHhcCC---CEEEEeccccccCHHhH--
Confidence 34555655555443 1111112233222 333589999999999999887654 66665 677887655
Q ss_pred hhHHHHh
Q 017924 155 KTLEDFL 161 (363)
Q Consensus 155 ~~l~~~~ 161 (363)
..+.+.+
T Consensus 502 ~~I~~~l 508 (567)
T COG1132 502 ALIQDAL 508 (567)
T ss_pred HHHHHHH
Confidence 4444444
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=98.37 E-value=5e-06 Score=71.03 Aligned_cols=36 Identities=36% Similarity=0.481 Sum_probs=28.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
.++..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~ 70 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLEK----PAQGTVSF 70 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEE
Confidence 3567999999999999999999999865 44454443
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.3e-06 Score=73.84 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13637 32 DGEFVGLIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 457999999999999999999999865
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=73.51 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 567999999999999999999999865
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.3e-06 Score=73.98 Aligned_cols=35 Identities=31% Similarity=0.359 Sum_probs=28.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~ 66 (290)
T PRK13634 32 SGSYVAIIGHTGSGKSTLLQHLNGLLQ----PTSGTVTI 66 (290)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC----CCCcEEEE
Confidence 457999999999999999999999865 44554443
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.1e-06 Score=71.63 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~----p~~G~i~~ 72 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGMIE----PTSGELLI 72 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC----CCCCEEEE
Confidence 457999999999999999999999875 44454433
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.6e-06 Score=82.87 Aligned_cols=123 Identities=15% Similarity=0.092 Sum_probs=67.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-------------eEEEEeeCCcEEEEEeCC----CCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-------------MKTTVLKDGQVVNVIDTP----GLF 80 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-------------~~~~~~~~~~~~~l~Dtp----G~~ 80 (363)
++.+|+|+|++|+|||||++.|+|... +..|.+..... +.++ .+....+-+|. .++
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL~gl~~----p~~G~I~i~g~~i~~~~~~~~~~~i~~~---~Q~~~lf~~Ti~~Ni~~~ 437 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLRFYD----PQSGRILLDGVDLRQLDPAELRARMALV---PQDPVLFAASVMENIRYG 437 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCCCEEEECCEEHHhcCHHHHHHhceEE---ccCCccccccHHHHHhcC
Confidence 567999999999999999999999866 44554443221 1111 11111111121 222
Q ss_pred CCCCChHHHHHHHHH-----HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 81 DLSAGSEFVGKEIVK-----CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
....+++++...+.. .+.....+.+.. +.+....+++++++++...+.++... +++++ ++.+|....
T Consensus 438 ~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~--i~~~g~~LSgGq~Qrl~laRal~~~~---~ililDEpts~lD~~~~ 512 (576)
T TIGR02204 438 RPDATDEEVEAAARAAHAHEFISALPEGYDTY--LGERGVTLSGGQRQRIAIARAILKDA---PILLLDEATSALDAESE 512 (576)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhCCCCCCce--eCCCCCcCCHHHHHHHHHHHHHHhCC---CeEEEeCcccccCHHHH
Confidence 222233333332222 111111222332 22334579999999999999887654 56665 677776543
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.6e-06 Score=72.09 Aligned_cols=27 Identities=33% Similarity=0.325 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999999765
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00015 Score=70.98 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
..++|.|+|++||||+++++.
T Consensus 328 ~~~iITGpN~gGKTt~lktig 348 (782)
T PRK00409 328 TVLVITGPNTGGKTVTLKTLG 348 (782)
T ss_pred eEEEEECCCCCCcHHHHHHHH
Confidence 468999999999999999985
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.2e-06 Score=71.17 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999999765
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.6e-07 Score=72.07 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567999999999999999999999865
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.6e-07 Score=84.81 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|+|+||||||||+++|+|...
T Consensus 344 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~ 370 (530)
T PRK15064 344 AGERLAIIGENGVGKTTLLRTLVGELE 370 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999999865
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.1e-07 Score=82.11 Aligned_cols=43 Identities=19% Similarity=0.064 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHHhccccccceEEE----EeCCCCCCcchhhHHHHhcc
Q 017924 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~i~v----~n~~D~~~~~~~~l~~~~~~ 163 (363)
..++++-+.++.+.+.+|.. |.+++ +||+|.... .||++++..
T Consensus 220 ~~~SgGwrmR~aLAr~Lf~k----P~LLLLDEPtnhLDleA~--~wLee~L~k 266 (614)
T KOG0927|consen 220 KDLSGGWRMRAALARALFQK----PDLLLLDEPTNHLDLEAI--VWLEEYLAK 266 (614)
T ss_pred hccCchHHHHHHHHHHHhcC----CCEEEecCCccCCCHHHH--HHHHHHHHh
Confidence 36778888888888888876 56655 799999877 899999887
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-06 Score=76.45 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+..++|+|+||||||||+++|+|...
T Consensus 39 ~Ge~~~LlGpsGsGKSTLLr~IaGl~~ 65 (375)
T PRK09452 39 NGEFLTLLGPSGCGKTTVLRLIAGFET 65 (375)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456999999999999999999999876
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.8e-06 Score=65.68 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 456999999999999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.2e-06 Score=65.20 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=30.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE 59 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~ 59 (363)
++..|+++|++|||||||+|.++|-.. ++.|.++....
T Consensus 30 ~ge~vv~lGpSGcGKTTLLnl~AGf~~----P~~G~i~l~~r 67 (259)
T COG4525 30 SGELVVVLGPSGCGKTTLLNLIAGFVT----PSRGSIQLNGR 67 (259)
T ss_pred CCCEEEEEcCCCccHHHHHHHHhcCcC----cccceEEECCE
Confidence 346899999999999999999999877 66666655443
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-06 Score=73.48 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 53 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999999865
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.5e-07 Score=76.60 Aligned_cols=35 Identities=29% Similarity=0.290 Sum_probs=28.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl~~----p~~G~i~~ 66 (287)
T PRK13641 32 EGSFVALVGHTGSGKSTLMQHFNALLK----PSSGTITI 66 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEE
Confidence 456999999999999999999999876 55554444
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-06 Score=74.50 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl~~ 58 (305)
T PRK13651 32 QGEFIAIIGQTGSGKTTFIEHLNALLL 58 (305)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456999999999999999999999865
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-06 Score=76.52 Aligned_cols=36 Identities=36% Similarity=0.398 Sum_probs=28.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
.++..++|+|+||||||||+++|+|... ++.|.+..
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~~----~~~G~i~i 61 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYLP----PDSGSVQV 61 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEE
Confidence 3557999999999999999999999865 45554443
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.8e-06 Score=64.22 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 446999999999999999999998765
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.6e-06 Score=80.50 Aligned_cols=126 Identities=15% Similarity=0.144 Sum_probs=69.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE----------EEeeCCcEEEEEeCC----CCCCC-
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT----------TVLKDGQVVNVIDTP----GLFDL- 82 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~----------~~~~~~~~~~l~Dtp----G~~~~- 82 (363)
++.+++|+|++|+|||||+++|+|... +..|.+.....-.. +.+..+....+-+|. .+...
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~----p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 443 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYD----IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE 443 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCC
Confidence 467899999999999999999999876 55555444322100 000011112122222 11111
Q ss_pred CCChHHHHHHHHHH-----HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 83 SAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 83 ~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
...++++.+.+... +.....+.|..+ .+.+..+++++++++...+.++... +++++ ++.+|....
T Consensus 444 ~~~~~~i~~al~~~~l~~~i~~lp~Gldt~i--g~~g~~LSGGqrQRi~LARall~~~---~ililDEptsaLD~~t~ 516 (582)
T PRK11176 444 QYSREQIEEAARMAYAMDFINKMDNGLDTVI--GENGVLLSGGQRQRIAIARALLRDS---PILILDEATSALDTESE 516 (582)
T ss_pred CCCHHHHHHHHHHhCcHHHHHhcccccCcee--CCCCCcCCHHHHHHHHHHHHHHhCC---CEEEEECccccCCHHHH
Confidence 12333433332221 122222333332 2333579999999999999888764 56665 677776544
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.9e-06 Score=69.27 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999999865
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=98.35 E-value=6e-06 Score=72.28 Aligned_cols=123 Identities=19% Similarity=0.179 Sum_probs=65.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccccccccc-CCCCCceeeEeE------------------EE----------EeeCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTKTCEMK------------------TT----------VLKDG 68 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~-~~~~~t~~~~~~------------------~~----------~~~~~ 68 (363)
++++|+|||++|+||||.+--|+.+..+.... .-+-+|+++... .. ....+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 47899999999999999998776443311111 111123222110 00 00124
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCC
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D 148 (363)
+.+.||||.|.... +.....++..++..+ ..++ +.+|++++ .-...-+..+. .|+.- ..--+++||+|
T Consensus 282 ~d~ILVDTaGrs~~---D~~~i~el~~~~~~~-~~i~-~~Lvlsat-~K~~dlkei~~----~f~~~--~i~~~I~TKlD 349 (407)
T COG1419 282 CDVILVDTAGRSQY---DKEKIEELKELIDVS-HSIE-VYLVLSAT-TKYEDLKEIIK----QFSLF--PIDGLIFTKLD 349 (407)
T ss_pred CCEEEEeCCCCCcc---CHHHHHHHHHHHhcc-ccce-EEEEEecC-cchHHHHHHHH----HhccC--CcceeEEEccc
Confidence 46789999997653 444456666666544 2333 34445554 21222222222 23221 12346789999
Q ss_pred CCCc
Q 017924 149 DLED 152 (363)
Q Consensus 149 ~~~~ 152 (363)
....
T Consensus 350 ET~s 353 (407)
T COG1419 350 ETTS 353 (407)
T ss_pred ccCc
Confidence 7754
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.4e-06 Score=73.16 Aligned_cols=27 Identities=22% Similarity=0.451 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567999999999999999999999865
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.8e-06 Score=73.44 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++.+++|+|+||+|||||+++|+|... +..|.++.
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~ 65 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGLLQ----PTEGKVTV 65 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC----CCCcEEEE
Confidence 456999999999999999999999865 45554443
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.9e-06 Score=68.53 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=79.5
Q ss_pred CCCCCCCCCccCCCCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe---------eC--CcE
Q 017924 2 GERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---------KD--GQV 70 (363)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~---------~~--~~~ 70 (363)
|+....++...... ++...+++|+|||||||++++|+|-.. ++.|.++....-..... .. ...
T Consensus 13 g~k~av~~isf~v~--~G~i~GllG~NGAGKTTtfRmILglle----~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k 86 (300)
T COG4152 13 GDKKAVDNISFEVP--PGEIFGLLGPNGAGKTTTFRMILGLLE----PTEGEITWNGGPLSQEIKNRIGYLPEERGLYPK 86 (300)
T ss_pred Cceeeecceeeeec--CCeEEEeecCCCCCccchHHHHhccCC----ccCceEEEcCcchhhhhhhhcccChhhhccCcc
Confidence 44444455544433 457899999999999999999998876 55555554332111111 00 123
Q ss_pred EEEEeCCCCCC--CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE----E
Q 017924 71 VNVIDTPGLFD--LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----F 144 (363)
Q Consensus 71 ~~l~DtpG~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v----~ 144 (363)
+++.|..-+.. -+....++.+.+..|+.+. ++.-+..+--..++.+....+..+..+... |-+++ +
T Consensus 87 ~tv~dql~yla~LkGm~~~e~~~~~~~wLer~----~i~~~~~~kIk~LSKGnqQKIQfisaviHe----PeLlILDEPF 158 (300)
T COG4152 87 MTVEDQLKYLAELKGMPKAEIQKKLQAWLERL----EIVGKKTKKIKELSKGNQQKIQFISAVIHE----PELLILDEPF 158 (300)
T ss_pred CcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----cccccccchHHHhhhhhhHHHHHHHHHhcC----CCEEEecCCc
Confidence 33444332211 1234455666666665433 333232221135677777778888877765 44544 4
Q ss_pred eCCCCCCcchhhHHHHhc
Q 017924 145 TGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 145 n~~D~~~~~~~~l~~~~~ 162 (363)
+-+|-... +.|.+.+.
T Consensus 159 SGLDPVN~--elLk~~I~ 174 (300)
T COG4152 159 SGLDPVNV--ELLKDAIF 174 (300)
T ss_pred cCCChhhH--HHHHHHHH
Confidence 66665544 55554443
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.9e-07 Score=79.13 Aligned_cols=60 Identities=27% Similarity=0.253 Sum_probs=37.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccc---ccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAF---KASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
+.+++|||.+|+|||||||+|++.... ....+..+.|+...+ .+.. + ....++||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~-~~~l-~-~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI-EIPL-D-DGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE-EEEc-C-CCcEEEECCCccc
Confidence 468999999999999999999854310 111333444443332 2222 2 2246999999864
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.9e-06 Score=69.41 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||++.|.|-..
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~ 55 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGLLK 55 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCcCc
Confidence 456999999999999999999998876
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-06 Score=83.02 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=67.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-------------eEEEEeeCCcEE----EEEeCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-------------MKTTVLKDGQVV----NVIDTPGLF 80 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-------------~~~~~~~~~~~~----~l~DtpG~~ 80 (363)
++.+++|+|++|+|||||++.|+|... ..|.+..+.. +.++. +... ++-|..-++
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~p-----~~G~I~i~g~~i~~~~~~~lr~~i~~v~---Q~~~LF~~TI~eNI~~g 446 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFLP-----YQGSLKINGIELRELDPESWRKHLSWVG---QNPQLPHGTLRDNVLLG 446 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-----CCcEEEECCEecccCCHHHHHhheEEec---CCCcCCCcCHHHHhhcC
Confidence 567999999999999999999998652 2344443321 11111 1111 111222222
Q ss_pred CCCCChHHHHHHHHHH-----HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 81 DLSAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
....+++++.+.+..+ +.....+.|.. +-+-+..+++++++++...+.++.+. +++++ ++.+|....
T Consensus 447 ~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~--vge~G~~LSGGQrQRialARAll~~~---~IliLDE~TSaLD~~te 521 (588)
T PRK11174 447 NPDASDEQLQQALENAWVSEFLPLLPQGLDTP--IGDQAAGLSVGQAQRLALARALLQPC---QLLLLDEPTASLDAHSE 521 (588)
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHhcccccccc--cccCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCccCCCHHHH
Confidence 2233444444433332 11111122332 22333589999999999999888754 56665 677776544
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.2e-07 Score=71.65 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||++.|+|...
T Consensus 26 pGev~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 26 PGEVLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred CCcEEEEECCCCccHHHHHHHhhCccC
Confidence 457999999999999999999999876
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-06 Score=74.79 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=54.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeC----------------CcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKD----------------GQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~~ 82 (363)
.+++|||.+++|||||+|+|++..... ....+ +|.......+.+.+ ...+.++|.||+...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~--~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNE--AANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccc--cCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 689999999999999999999775411 22212 22333333333322 125789999998753
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
.....-++..+...+ ..+|++++|+++.
T Consensus 81 As~g~Glgn~fL~~i----r~~d~l~hVvr~f 108 (368)
T TIGR00092 81 ASKGEGLGNQFLANI----REVDIIQHVVRCF 108 (368)
T ss_pred hhcccCcchHHHHHH----HhCCEEEEEEeCC
Confidence 222222334444443 4679999999863
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.5e-07 Score=87.49 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=27.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t 55 (363)
++.+|+|+|+||||||||+++|+|... +..|.+.
T Consensus 534 ~Ge~i~LvG~NGsGKSTLLk~L~Gll~----p~~G~I~ 567 (718)
T PLN03073 534 LDSRIAMVGPNGIGKSTILKLISGELQ----PSSGTVF 567 (718)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC----CCCceEE
Confidence 456999999999999999999999865 4555444
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.2e-06 Score=75.53 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 44 ~Ge~~~llGpsGsGKSTLLr~IaGl~~ 70 (377)
T PRK11607 44 KGEIFALLGASGCGKSTLLRMLAGFEQ 70 (377)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456999999999999999999999876
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.9e-06 Score=81.55 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=28.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t 55 (363)
.++.+++|+|+||||||||+++|+|... +..|.+.
T Consensus 29 ~~Ge~~~liG~NGsGKSTLl~~i~G~~~----p~~G~i~ 63 (552)
T TIGR03719 29 FPGAKIGVLGLNGAGKSTLLRIMAGVDK----EFNGEAR 63 (552)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 3456999999999999999999999865 4445443
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=98.34 E-value=3e-06 Score=70.41 Aligned_cols=34 Identities=32% Similarity=0.393 Sum_probs=27.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t 55 (363)
++..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----p~~G~i~ 80 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYP----PDSGTVT 80 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 457999999999999999999999765 4445443
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.9e-06 Score=70.31 Aligned_cols=27 Identities=30% Similarity=0.561 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++..++|+|+||+|||||+++|+|..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 355799999999999999999999973
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-06 Score=83.04 Aligned_cols=125 Identities=17% Similarity=0.146 Sum_probs=67.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE----------EEeeCCcEEEEEe----CCCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT----------TVLKDGQVVNVID----TPGLFDLS 83 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~----------~~~~~~~~~~l~D----tpG~~~~~ 83 (363)
++.+|+|+|++|+|||||++.|+|... +..|.+..+..-.. +.+..+....+-+ ...++. .
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~----p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~ 440 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMGYYP----LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-D 440 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC----CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-C
Confidence 567999999999999999999999876 55555444322100 0000111111111 111122 1
Q ss_pred CChHHHHHHHHHH-----HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 84 AGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 84 ~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
..+.++.+.+... +.....+.|..+ ...+..+++++++++...+.++... +++++ ++.+|....
T Consensus 441 ~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i--~e~g~~LSGGqrQRialARaLl~~~---~illlDEpts~LD~~t~ 512 (592)
T PRK10790 441 ISEEQVWQALETVQLAELARSLPDGLYTPL--GEQGNNLSVGQKQLLALARVLVQTP---QILILDEATANIDSGTE 512 (592)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccccc--cCCCCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCcccCCHHHH
Confidence 2333333322221 111112333332 2233589999999999999888654 56665 566665443
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.1e-07 Score=80.04 Aligned_cols=124 Identities=16% Similarity=0.048 Sum_probs=68.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee-------------EeEEEEeeCCcEEEEEeCC----CCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-------------EMKTTVLKDGQVVNVIDTP----GLF 80 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~-------------~~~~~~~~~~~~~~l~Dtp----G~~ 80 (363)
.+.+|+|||.|||||||++++|++-..+ .|.+-++. .+..+ .+....+-||. ..+
T Consensus 377 kGekVaIvG~nGsGKSTilr~LlrF~d~-----sG~I~IdG~dik~~~~~SlR~~Ig~V---PQd~~LFndTIl~NI~YG 448 (591)
T KOG0057|consen 377 KGEKVAIVGSNGSGKSTILRLLLRFFDY-----SGSILIDGQDIKEVSLESLRQSIGVV---PQDSVLFNDTILYNIKYG 448 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcc-----CCcEEECCeeHhhhChHHhhhheeEe---CCcccccchhHHHHhhcC
Confidence 3569999999999999999999865432 12222211 11122 12222244443 233
Q ss_pred CCCCChHHHHHHHHHHHh-ccC-CCccE-EEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 81 DLSAGSEFVGKEIVKCLG-MAK-DGIHA-FLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~-~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
....+.+++.+...++-. -.. .-.++ .-.|..-...+++++++.+..++..+... +++++ ++++|..++
T Consensus 449 n~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda---~Il~~DEaTS~LD~~TE 523 (591)
T KOG0057|consen 449 NPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA---PILLLDEATSALDSETE 523 (591)
T ss_pred CCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC---CeEEecCcccccchhhH
Confidence 444556665555444310 000 00011 11222333578999999999998887654 66665 678876654
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.5e-06 Score=72.85 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 567999999999999999999999865
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 363 | ||||
| 3lxx_A | 239 | Crystal Structure Of Human Gtpase Imap Family Membe | 6e-32 | ||
| 3v70_A | 247 | Crystal Structure Of Human Gtpase Imap Family Membe | 3e-27 | ||
| 2xtm_A | 234 | Crystal Structure Of Gdp-Bound Human Gimap2, Amino | 2e-26 | ||
| 3p1j_A | 209 | Crystal Structure Of Human Gtpase Imap Family Membe | 9e-26 | ||
| 2xto_A | 240 | Crystal Structure Of Gdp-Bound Human Gimap2, Amino | 1e-25 | ||
| 2xtp_A | 260 | Crystal Structure Of Nucleotide-Free Human Gimap2, | 6e-25 | ||
| 3bb4_A | 262 | Crystal Structure Of Toc33 From Arabidopsis Thalian | 3e-04 | ||
| 3bb3_A | 262 | Crystal Structure Of Toc33 From Arabidopsis Thalian | 3e-04 |
| >pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239 | Back alignment and structure |
|
| >pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247 | Back alignment and structure |
|
| >pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234 | Back alignment and structure |
|
| >pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209 | Back alignment and structure |
|
| >pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240 | Back alignment and structure |
|
| >pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260 | Back alignment and structure |
|
| >pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Mg2+ And Gmppnp Length = 262 | Back alignment and structure |
|
| >pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Gdp And Mg2+ Length = 262 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260 | Back alignment and structure |
|---|
Score = 218 bits (556), Expect = 1e-69
Identities = 66/259 (25%), Positives = 127/259 (49%), Gaps = 13/259 (5%)
Query: 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV 70
K S E ++L+G+TG GKSA GNSIL ++AF++ GS +TKTC +
Sbjct: 14 KGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNRE 72
Query: 71 VNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130
+ +IDTP +F E + KE+ +C ++ G H L+V + R++ +++ A R+
Sbjct: 73 IVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKE 131
Query: 131 LFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDE 190
+FG++ + IV+FT +DL +L D++ K L +++ C R F+N+ +
Sbjct: 132 IFGEDAMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGS 189
Query: 191 AKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMG 250
+ +QV++L+ + ++++ G YT+ L + S + +
Sbjct: 190 NQ-DDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQRSKCGPVG-------SDERVKEFKQ 241
Query: 251 QMQESYEDRIKRMAEMVES 269
+ + E + + + E+
Sbjct: 242 SLIKYMETQ-RSYTALAEA 259
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
Score = 207 bits (527), Expect = 1e-65
Identities = 75/220 (34%), Positives = 124/220 (56%), Gaps = 6/220 (2%)
Query: 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNV 73
P N + +VL+G+TG GKSATGNSILGRK F + + +TK CE +++ + V
Sbjct: 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVV 82
Query: 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG 133
+DTPG+FD + KEI++C+ + G HA L+V + R+++EE A ++ +FG
Sbjct: 83 VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFG 141
Query: 134 KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKG 193
+ +MI++FT DDL D L D+L E P+ +++++ + +R +NK +
Sbjct: 142 ERARSFMILIFTRKDDLGD--TNLHDYL-REAPEDIQDLMDIFGDRYCALNNKATGAEQ- 197
Query: 194 TEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAE 233
Q QLL L+ V+ +N YT+ + + A E K+ +
Sbjct: 198 EAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQTQ 237
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 198 bits (504), Expect = 8e-62
Identities = 45/236 (19%), Positives = 84/236 (35%), Gaps = 22/236 (9%)
Query: 3 ERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT 62
E++++ K TV++LG+ G GKS+T NS++G + + S + + +
Sbjct: 20 EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79
Query: 63 TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE 122
T+ G +N+IDTPGL + + + I L + ++ V + ++
Sbjct: 80 TM--GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY-AVDELDK 136
Query: 123 TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL 182
V + FGK ++ ++V T E + E F LK I R
Sbjct: 137 QVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQE 196
Query: 183 FDNKTKDEA-------------------KGTEQVRQLLSLVNSVIVQNGGQPYTDE 219
F++ G + L+ + V + D
Sbjct: 197 FEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRKAIHVDA 252
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 175 bits (444), Expect = 7e-53
Identities = 41/268 (15%), Positives = 96/268 (35%), Gaps = 32/268 (11%)
Query: 3 ERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT 62
++++ T++++G+ G GKS+T NSI+G + S S + +
Sbjct: 23 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 82
Query: 63 TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRFSQEE 121
+ G +N+IDTPGL + ++ I L I L V + R +
Sbjct: 83 SR--AGFTLNIIDTPGLIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAYRVDNLD 138
Query: 122 ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV 181
+ + + FGK +++ IV T ++F + + L ++++ +
Sbjct: 139 KLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFF-SKRSEALLQVVRSGASLKK 197
Query: 182 LFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYS 241
V+++N G+ ++ L + A +
Sbjct: 198 DAQASDIPV----------------VLIENSGRCNKND--SDEKVLPNGIAWI------- 232
Query: 242 KREISKLMGQMQESYEDRIKRMAEMVES 269
+ + + ++ + + I +++
Sbjct: 233 -PHLVQTITEVALNKSESIFVDKNLIDK 259
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 1e-08
Identities = 31/294 (10%), Positives = 86/294 (29%), Gaps = 81/294 (27%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
+ V++ G G+GK + + A V +V +D
Sbjct: 150 AKNVLIDGVLGSGK-----TWV--------ALD------------VCLSYKVQCKMDF-K 183
Query: 79 LFDLSAGSEFVGKEIVK-----CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG 133
+F L+ + + +++ + + + ++ + L L
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPN----WTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 134 KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC-VLFDNKTKDEAK 192
++ ++V ++++ K F + C +L T+ +
Sbjct: 240 SKPYENCLLVL---LNVQN-AKAWNAF----------------NLSCKILL--TTRFK-- 275
Query: 193 GTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKLMGQM 252
+ + + D T D+ + L +Y L ++
Sbjct: 276 ---------QVTDFLSAATTTHISLDHHSMTLTP--DEVKSL--LLKYLDCRPQDLPREV 322
Query: 253 QESYEDRIKRMAEMVESGLKETTTRLE--QQLAKEQAARLRAEEVAQL--AEMK 302
+ R+ +AE +++ + + + ++ + + L AE +
Sbjct: 323 LTTNPRRLSIIAES----IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 4e-06
Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 14/142 (9%)
Query: 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDGQVVNV 73
+ V + G TG+GKS+ N++ G + A +GV + E + V
Sbjct: 65 IDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVF 124
Query: 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG 133
D PG+ + + + K + + ++ ++ + + + ++
Sbjct: 125 WDLPGIGSTNFPPDTY---------LEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMK 175
Query: 134 KNVFDYMIVVFTGGDDLEDHEK 155
K V T D +E
Sbjct: 176 KEF----YFVRTKVDSDITNEA 193
|
| >2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 9e-05
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 261 KRMAEMVESGLKETTTRLEQQLAKEQAARLRAEEVAQLAEMKLKDEIQSRSTEKETAEPP 320
+ + E T + + + A+ +A M+ + Q+ + A PP
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPP 397
Query: 321 K--PSENPPPEPPRPPASPPREPPRPPASPPPK 351
+ P + PP+ P PP+ P PP PP+
Sbjct: 398 QGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQ 430
|
| >3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 | Back alignment and structure |
|---|
Score = 43.4 bits (101), Expect = 9e-05
Identities = 14/79 (17%), Positives = 26/79 (32%)
Query: 279 EQQLAKEQAARLRAEEVAQLAEMKLKDEIQSRSTEKETAEPPKPSENPPPEPPRPPASPP 338
+ + + EE A E+ S +E T E K +E + +
Sbjct: 8 HGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEG 67
Query: 339 REPPRPPASPPPKPSSTSD 357
ASP ++T++
Sbjct: 68 VATASETASPASNEAATTE 86
|
| >1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 4e-04
Identities = 14/56 (25%), Positives = 20/56 (35%)
Query: 303 LKDEIQSRSTEKETAEPPKPSENPPPEPPRPPASPPREPPRPPASPPPKPSSTSDG 358
L + + + PP + +P P AS R P + P PS S G
Sbjct: 18 LPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSG 73
|
| >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 5e-04
Identities = 13/82 (15%), Positives = 26/82 (31%)
Query: 274 TTTRLEQQLAKEQAARLRAEEVAQLAEMKLKDEIQSRSTEKETAEPPKPSENPPPEPPRP 333
+ + Q + A+ + + A+++ +Q EP PP+
Sbjct: 18 SHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPV 77
Query: 334 PASPPREPPRPPASPPPKPSST 355
P+ P+P P K
Sbjct: 78 VIEKPKPKPKPKPKPVKKVQEQ 99
|
| >1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138 | Back alignment and structure |
|---|
Score = 38.9 bits (90), Expect = 6e-04
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 323 SENPPPEPPRPPASPPREPPRPPASPPPKPS 353
+ N P P +SPP PP PPP PS
Sbjct: 108 AANATVSMPPPSSSPPSSVMPPPVMPPPSPS 138
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 7e-04
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 8/97 (8%)
Query: 265 EMVESGLKETTTRLEQQ---LAKEQAARLRAEEVAQLAEMKLKDEI-----QSRSTEKET 316
+VE G +T + ++ E + + L K EI + T
Sbjct: 43 RIVEIGPSDTLGGMARRTLQSKYEAYDAATSVQRQILCYCKDAKEIYYDVEPIEDEPEPT 102
Query: 317 AEPPKPSENPPPEPPRPPASPPREPPRPPASPPPKPS 353
++ P P PA+P P PAS P
Sbjct: 103 PAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAP 139
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 363 | |||
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.95 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.95 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.93 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.81 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.81 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.79 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.76 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.75 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.75 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.75 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.73 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.71 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.7 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.69 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.68 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.68 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.68 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.68 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.68 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.67 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.66 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.66 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.66 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.65 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.65 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.65 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.64 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.64 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.64 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.64 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.64 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.64 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.64 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.63 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.63 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.63 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.63 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.63 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.63 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.62 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.62 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.62 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.62 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.62 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.62 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.62 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.62 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.61 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.61 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.61 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.61 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.61 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.61 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.61 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.61 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.61 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.61 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.6 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.6 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.6 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.6 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.6 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.6 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.6 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.6 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.6 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.6 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.6 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.6 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.6 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.59 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.59 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.59 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.59 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.59 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.59 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.59 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.59 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.59 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.59 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.59 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.59 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.59 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.59 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.59 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.59 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.59 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.59 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.58 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.58 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.58 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.58 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.58 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.58 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.58 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.58 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.58 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.58 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.58 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.58 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.58 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.58 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.57 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.57 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.57 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.57 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.57 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.57 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.57 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.57 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.57 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.56 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.56 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.55 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.55 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.55 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.55 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.55 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.55 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.55 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.55 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.55 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.55 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.54 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.54 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.54 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.54 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.54 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.54 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.54 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.53 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.53 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.53 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.53 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.53 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.53 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.53 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.52 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.52 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.52 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.52 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.52 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.52 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.52 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.52 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.51 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.51 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.51 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.51 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.51 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.51 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.5 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.5 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.5 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.49 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.48 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.48 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.47 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.45 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.44 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.44 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.43 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.43 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.15 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.42 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.41 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.4 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.4 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.39 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.39 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.39 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.38 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.38 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.37 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.37 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.37 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.37 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.36 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.34 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.34 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.33 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.32 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.32 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.32 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.31 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.31 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.3 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.28 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.27 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.25 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.24 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.21 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.2 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.18 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.18 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.17 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.13 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.12 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.08 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.02 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.99 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.99 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 98.96 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 98.88 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.87 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.87 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.8 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 98.79 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.78 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 98.77 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.73 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.62 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 98.62 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.61 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.56 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.54 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 98.52 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 98.51 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 98.51 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 98.5 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 98.49 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 98.47 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 98.47 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 98.47 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 98.46 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 98.44 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.4 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 98.38 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 98.38 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 98.36 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 98.35 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 98.35 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 98.32 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.32 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 98.3 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 98.28 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 98.27 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.26 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 98.26 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 98.24 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 98.24 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 98.23 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 98.23 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 98.21 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.2 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 98.19 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 98.19 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 98.19 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 98.19 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 98.18 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 98.18 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 98.17 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.17 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 98.16 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.15 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 98.13 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 98.13 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 98.12 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 98.12 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 98.12 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 98.12 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 98.11 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.11 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.1 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.09 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 98.09 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 98.09 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 98.05 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 98.04 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 98.04 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.03 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 98.02 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 98.02 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 98.01 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 97.99 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.99 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.99 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.99 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.97 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.96 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 97.93 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.91 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.91 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.91 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 97.88 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.88 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.87 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.86 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 97.86 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.85 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.85 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.84 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.82 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.81 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 97.8 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 97.8 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.8 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.78 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.78 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 97.78 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 97.77 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 97.73 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 97.71 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.71 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 97.7 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 97.68 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 97.66 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.66 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.65 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.62 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.62 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.6 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 97.6 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 97.59 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 97.59 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.59 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 97.57 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 97.57 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.57 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.55 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.55 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 97.54 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 97.54 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 97.53 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.53 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 97.52 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 97.51 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.5 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.5 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.49 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.49 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 97.48 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.47 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.46 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 97.45 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 97.45 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 97.44 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 97.43 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.41 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.38 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.38 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.38 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 97.36 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.3 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.3 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.27 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.27 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 97.26 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 97.24 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.23 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 97.21 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.21 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.2 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.2 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 97.19 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 97.18 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.17 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.17 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 97.17 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 97.17 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 97.13 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 97.11 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.08 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 97.08 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.07 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 97.06 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.06 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.05 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 97.04 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.0 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.98 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.97 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 96.96 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.96 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.95 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.95 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 96.91 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 96.91 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 96.9 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 96.89 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 96.88 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.87 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.85 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.84 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.84 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 96.83 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.83 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.82 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 96.79 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.79 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.78 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.77 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 96.76 | |
| 3iot_A | 449 | Maltose-binding protein, huntingtin fusion protei; | 96.76 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.75 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.73 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.73 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.73 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.71 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.71 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.71 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.7 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.7 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.69 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.68 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.68 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.67 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.65 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.65 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.62 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 96.59 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 96.58 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.58 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 96.57 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.57 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.55 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 96.54 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.53 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.53 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.53 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.52 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.52 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.5 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.5 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.49 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.48 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 96.48 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 96.48 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.46 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.45 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.45 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.45 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.45 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.45 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.42 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.41 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.4 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.4 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.39 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.39 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.37 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.36 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.36 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.29 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.29 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.28 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.24 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.24 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.2 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.2 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.2 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.16 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 96.15 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.15 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.15 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.14 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.14 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.12 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.11 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.08 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 96.02 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 96.02 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.01 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.0 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.99 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.99 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 95.98 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.93 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 95.92 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.9 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.9 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.89 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.87 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.86 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.84 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.81 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 95.8 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.76 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 95.75 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.73 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 95.7 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.66 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 95.66 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.65 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.65 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.64 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 95.63 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.62 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.62 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.61 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 95.58 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.58 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 95.57 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 95.53 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 95.52 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.48 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.48 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.47 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 95.46 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.46 |
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=194.46 Aligned_cols=205 Identities=36% Similarity=0.661 Sum_probs=142.8
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
+.....+|+|||.+|+|||||+|+|+|...+.......++|..+....+.+ ++..++|+||||+.+......++.+.+.
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHH
Confidence 334568999999999999999999999877544333334565666666666 7889999999999987766777778888
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
+.+...+.++|++++|+|++ +++..+...+..+...++.....++++|+||+|.... ..+++++.. ..+.+..++.
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~l~~ 179 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQDLMD 179 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHHHHH
Confidence 88888888999999999998 7888888888888887776555689999999999876 667777764 3456888999
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHHHHHhHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGAT 225 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 225 (363)
.|+.+++.|+... .++....++.+|++.+..++..+++.+|...++...+
T Consensus 180 ~~~~~~~~~~~~~-~~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e 229 (239)
T 3lxx_A 180 IFGDRYCALNNKA-TGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAE 229 (239)
T ss_dssp HHSSSEEECCTTC-CHHHHHHHHHHHHHHHHHHHHHCTTSCC---------
T ss_pred HcCCEEEEEECCC-CccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence 9999999988764 2345567999999999999999888888888766544
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-24 Score=181.27 Aligned_cols=201 Identities=30% Similarity=0.576 Sum_probs=150.3
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.....+|+|+|.+|||||||+|.|+|...+.......++|.......+.+ ++..+.|+||||+.+.........+.+.+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 34568999999999999999999998876554333333455555555556 78899999999998765555555566677
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEe-CCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n-~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.+..++.++|++++|+|++ +++..+...+..+...++.....+.++|+| |+|+... .+..++.......+..++.
T Consensus 98 ~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG---SLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC---CHHHHHHHCCCHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc---cHHHHHHhcchHHHHHHHH
Confidence 7666778999999999998 688888888888888877654457777777 9998743 3555554323334666788
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKR 222 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 222 (363)
.++.++..|+. ...|+..+.++.++++.|...+....+.+|..+.+.
T Consensus 174 ~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~ 220 (260)
T 2xtp_A 174 ACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYS 220 (260)
T ss_dssp HTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHH
T ss_pred HhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHH
Confidence 88888766665 678889999999999999999988766777766443
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=156.29 Aligned_cols=175 Identities=16% Similarity=0.200 Sum_probs=117.2
Q ss_pred CCCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHH
Q 017924 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKE 92 (363)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~ 92 (363)
+++.+.+.|+|+|.+|||||||+|.|+|..... .+....++...+....... +..++|+||||+.+.. ....+.+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i--~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~-~~~~l~~~ 81 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI--ISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK-KSDVLGHS 81 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC-TTCHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccc--cCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc-cchhHHHH
Confidence 345566899999999999999999999987521 2233333333333332325 7899999999998754 12345566
Q ss_pred HHHHHhccCCCccEEEEEeecCCCCCHHHHHH-HHHHHHHhccccccceEEEEeCCCCC-CcchhhHHHHhccCCCchHH
Q 017924 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDL-EDHEKTLEDFLGHECPKPLK 170 (363)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~i~v~n~~D~~-~~~~~~l~~~~~~~~~~~~~ 170 (363)
+......++..+|++++|+|+++..+..+... +..+.. . ..|+++|+||+|+. .. ..+...+..
T Consensus 82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-~----~~pvilV~NK~Dl~~~~--~~~~~~~~~------- 147 (308)
T 3iev_A 82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-L----NKPVIVVINKIDKIGPA--KNVLPLIDE------- 147 (308)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-G----CCCEEEEEECGGGSSSG--GGGHHHHHH-------
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-c----CCCEEEEEECccCCCCH--HHHHHHHHH-------
Confidence 66666666678899999999987777777665 444443 1 23899999999987 44 333333333
Q ss_pred HHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+...++.. ......|+..+.++.+|++.+...+..
T Consensus 148 -l~~~~~~~----~~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 148 -IHKKHPEL----TEIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp -HHHHCTTC----CCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred -HHHhccCC----CeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 22333211 112356888899999999999888754
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-19 Score=151.03 Aligned_cols=165 Identities=18% Similarity=0.184 Sum_probs=112.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.++|+|||.+|+|||||+|+|+|..... .+....|+...+......++..+.|+||||+.+.. ..+.+.+.....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~i--vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~ 81 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAP--ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM---DALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC---SHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceee--ecCCCCceeEEEEEEEEeCCcEEEEecCccccchh---hHHHHHHHHHHH
Confidence 4789999999999999999999887521 22233333333333322367889999999998742 344555666666
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhh-HHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~ 177 (363)
.++..+|++++|+|+++.++..+...++.+...+. . .|+++|+||+|+... .. +.+.+.. + +.
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~-~--~p~ilV~NK~Dl~~~--~~~~~~~~~~--------~---~~ 145 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVG-K--VPILLVGNKLDAAKY--PEEAMKAYHE--------L---LP 145 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT-T--SCEEEEEECGGGCSS--HHHHHHHHHH--------T---ST
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC-C--CCEEEEEECcccCCc--hHHHHHHHHH--------h---cC
Confidence 67788999999999987788777665555554321 1 389999999999765 33 3333322 1 11
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.. .....|+..+.++.+|++.+...+.
T Consensus 146 ~~-----~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 146 EA-----EPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp TS-----EEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred cC-----cEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 11 1235688889999999998877654
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-18 Score=140.10 Aligned_cols=176 Identities=14% Similarity=0.159 Sum_probs=111.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccccc-ccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~ 93 (363)
....+|+|+|..|+|||||+|.|+|...+ ..... .+.|............+..+.|+||||+.+...... +....+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKT-PGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCC-CCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCC-CCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 45689999999999999999999988621 11121 223433344444322567899999999876533322 111223
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
..........+|++++|+|+++.++..+..++..+.. .+ .++++|+||+|+... ..+...+.. +...+
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-~~----~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~l 173 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-TG----KPIHSLLTKCDKLTR--QESINALRA-----TQKSL 173 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-GC----CCEEEEEECGGGSCH--HHHHHHHHH-----HHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-cC----CCEEEEEeccccCCh--hhHHHHHHH-----HHHHH
Confidence 3233333456899999999987788777776666554 12 389999999999865 444444433 33333
Q ss_pred Hhc-----CCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 174 QLC-----DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 174 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+ .....+ ...|++.+.++.++++.|...+.
T Consensus 174 ~~~~~~~~~~~~~~----~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 174 DAYRDAGYAGKLTV----QLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp HHHHHHTCCSCEEE----EEEBTTTTBSHHHHHHHHHHHHC
T ss_pred HhhhhcccCCCCeE----EEeecCCCcCHHHHHHHHHHhcC
Confidence 332 111111 25678889999999999887764
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.7e-17 Score=130.06 Aligned_cols=170 Identities=17% Similarity=0.249 Sum_probs=101.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCC-CCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~ 93 (363)
....+|+|+|..|+|||||+|.|++.... ..... ...|...... .. +..+.++||||+.+...... +....+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~t~~~~~~--~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNL-ARTSSKPGKTQTLNFY--II--NDELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEE--EE--TTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cccCCCCCceeeEEEE--EE--CCcEEEEECCCCCccccCHHHHHHHHHH
Confidence 34589999999999999999999987521 11111 1122222222 22 34688999999877544322 111222
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
..........+|++++|+|+++..+..+...+.++.. .+ .|+++|+||+|+... ..+...... +...+
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~~ 163 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-YG----IPVIVIATKADKIPK--GKWDKHAKV-----VRQTL 163 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCG--GGHHHHHHH-----HHHHH
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECcccCCh--HHHHHHHHH-----HHHHH
Confidence 2222333345699999999987777777666665544 12 289999999999866 444433333 33323
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.......+ ...|+..+.++.++++.|.+.+
T Consensus 164 ~~~~~~~~-----~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 164 NIDPEDEL-----ILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TCCTTSEE-----EECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCCCce-----EEEEccCCCCHHHHHHHHHHHh
Confidence 22111122 2467778899999999887654
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-17 Score=137.90 Aligned_cols=142 Identities=25% Similarity=0.335 Sum_probs=102.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|..|+|||||+|+|+|......... .+.|.......+.+ ++..++|+||||+.+.........+.+.+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~-~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPF-QAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSS-CC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCC-CCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 458999999999999999999998765222222 22344444445555 7889999999999876544445555555554
Q ss_pred hccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
...++|++++|++++ .+++..+..+++.+...++.....++++|+||+|+...+...+++++..
T Consensus 113 --~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~ 177 (262)
T 3def_A 113 --VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK 177 (262)
T ss_dssp --TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred --hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence 234789999998876 3577788889999999888776679999999999864433556666543
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-17 Score=138.43 Aligned_cols=142 Identities=24% Similarity=0.338 Sum_probs=99.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|.+|+|||||+|+|+|.......... +.|.......... .+..++|+||||+.+.........+.+.+++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~-~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQ-SEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSS-CCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCC-CcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 4579999999999999999999987753222222 2233333333444 6788999999999775433334444444432
Q ss_pred hccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
...++|+++||++++ .+++..+..++..+...++...+.++++|+||+|+...+...+++++..
T Consensus 116 --~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~ 180 (270)
T 1h65_A 116 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK 180 (270)
T ss_dssp --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH
T ss_pred --hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH
Confidence 245789999998876 3677778888888888887665569999999999876533456666543
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-16 Score=128.72 Aligned_cols=171 Identities=15% Similarity=0.174 Sum_probs=109.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~~ 94 (363)
....+|+|+|..|+|||||+|.|++..........+ .+..... .. .+..+.++||||+........ .....+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~t~~~~~--~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPG-KTRSINF--YL--VNSKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEE--EE--ETTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCC-CccCeEE--EE--ECCcEEEEECCCCccccCChhhHHHHHHHH
Confidence 345799999999999999999999876321212221 2222222 11 244677999999776433221 1222333
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.........++++++|+|.+...+..+...+.++... + .|+++|+||+|+... ..+...... +.....
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-~----~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~~~ 163 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-N----IPFTIVLTKMDKVKM--SERAKKLEE-----HRKVFS 163 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGSCG--GGHHHHHHH-----HHHHHH
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCh--HHHHHHHHH-----HHHHHh
Confidence 3333444577999999998867777776666666553 2 289999999999865 445544444 444554
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+...+ ...|+..+.++.++++.+.+.+.
T Consensus 164 ~~~~~~~-----~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 164 KYGEYTI-----IPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp SSCCSCE-----EECCTTTCTTHHHHHHHHHHHHC
T ss_pred hcCCCce-----EEEecCCCCCHHHHHHHHHHHhh
Confidence 4332222 24678888999999998887653
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-17 Score=140.68 Aligned_cols=166 Identities=16% Similarity=0.204 Sum_probs=106.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeCCcEEEEEeCCCCC-CCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQVVNVIDTPGLF-DLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~DtpG~~-~~~~~~~~~~~~~~~ 95 (363)
...+|+|||++|||||||+|+|+|..... .+....++..... .+.+ ++..++++||||+. . ....+.+.+..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i--~s~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~---~~~~l~~~~~~ 80 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHME---EKRAINRLMNK 80 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEE--CCCCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHH---HHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccc--cCCCCCcceeeEEEEEEE-CCeeEEEEECcCCCcc---chhhHHHHHHH
Confidence 34699999999999999999999986522 2222223332222 2333 67889999999976 2 11222233333
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...+|++++|+|+++ ++.++...++.+.. ...|+++++||+|.... ...+.+.+.. +...
T Consensus 81 ~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~~-~~~~~~~l~~--------l~~~ 145 (301)
T 1ega_A 81 AASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQE-KADLLPHLQF--------LASQ 145 (301)
T ss_dssp CTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCCC-HHHHHHHHHH--------HHTT
T ss_pred HHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCcc-HHHHHHHHHH--------HHHh
Confidence 34556678999999999985 88887755554432 12389999999998862 1333333322 3333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
++...+ ...|+..+.++.+|++.+...+.
T Consensus 146 ~~~~~~-----i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 146 MNFLDI-----VPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp SCCSEE-----EECCTTTTTTHHHHHHHHHTTCC
T ss_pred cCcCce-----EEEECCCCCCHHHHHHHHHHhCC
Confidence 332111 25677888999999998877654
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=135.16 Aligned_cols=171 Identities=19% Similarity=0.277 Sum_probs=94.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccC----CCCCceeeEeEEEEee-CC--cEEEEEeCCCCCCCCCChH---H
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG----SSGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSE---F 88 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~----~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~---~ 88 (363)
..+|+|||.+|+|||||+|+|++...+..... ....|+.......... ++ ..++++||||+++...... .
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 47999999999999999999998887554320 0012222222222221 33 3789999999976533221 1
Q ss_pred HH----HHHHHHHh---------ccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcch
Q 017924 89 VG----KEIVKCLG---------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE 154 (363)
Q Consensus 89 ~~----~~~~~~~~---------~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~ 154 (363)
+. .++..++. ....++|+++++++.+ +.+...+...++.+.. . .|+++|+||+|....
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~--~pvi~V~nK~D~~~~-- 159 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----K--VNIIPLIAKADTLTP-- 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----T--SCEEEEESSGGGSCH--
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----c--CCEEEEEeccCCCCH--
Confidence 11 11122221 1234578999988665 4677777776666544 2 389999999999866
Q ss_pred hhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 155 KTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 155 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+..+... +...+...+..++.+ ++..+.++.++.+.|...+
T Consensus 160 ~e~~~~~~~-----i~~~l~~~~i~v~~~------sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 160 EECQQFKKQ-----IMKEIQEHKIKIYEF------PETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHH-----HHHHHHHTTCCCCCC-----------------CHHHHHTC
T ss_pred HHHHHHHHH-----HHHHHHHcCCeEEcC------CCCCChhHHHHHHHHhcCC
Confidence 556555555 555555555554433 4556678888877776654
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-16 Score=124.97 Aligned_cols=166 Identities=16% Similarity=0.205 Sum_probs=101.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|..|+|||||++.|++..... ....+.+.......+.+ ++..+.++||||...... .
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-----------~ 71 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE--QEAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTT-----------M 71 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC--SSCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSC-----------S
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc--CCCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHH-----------H
Confidence 345799999999999999999999765421 11122232333333444 677889999999765321 1
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.......+|++++|+|+++.........+..+. ... .|+++|+||+|+.......+...+.. ...+...+
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~---~~~--~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~ 141 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVMPQTVEAINHAK---AAN--VPIIVAINKMDKPEANPDRVMQELME-----YNLVPEEW 141 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHG---GGS--CCEEEEEETTTSSCSCHHHHHHHHTT-----TTCCBTTT
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHH---hCC--CCEEEEEECccCCcCCHHHHHHHHHh-----cCcChhHc
Confidence 224456789999999988555555555444332 222 38999999999875421222222222 11011111
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+....+ ...|++.+.++.++++.|...+..
T Consensus 142 ~~~~~~----~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 142 GGDTIF----CKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp TSSEEE----EECCSSSSHHHHHHHHHHHHHHHH
T ss_pred CCcccE----EEEecCCCCCHHHHHHHHHHhhhh
Confidence 111111 256888899999999988877654
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7e-17 Score=127.80 Aligned_cols=161 Identities=20% Similarity=0.179 Sum_probs=97.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHH-HHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK-EIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~-~~~~~ 96 (363)
++.+|+|+|.+|+|||||+|.|+|.......... +.|.......+.+ ++..+.++||||+..... .+.. .+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~-~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~---~~~~~~~~~- 76 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIA-GTTRDVLREHIHI-DGMPLHIIDTAGLREASD---EVERIGIER- 76 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSST-TCCCSCEEEEEEE-TTEEEEEEECCCCSCCSS---HHHHHHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCC-CceeceeeEEEEE-CCeEEEEEECCCcccchh---HHHHHHHHH-
Confidence 4579999999999999999999987531111111 1222222333444 677789999999865321 1111 1111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
....+..+|++++|+|+++..+.....++..+....... .|+++|+||+|+... .. ++...
T Consensus 77 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~~--~~--~~~~~------------- 137 (172)
T 2gj8_A 77 AWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITGE--TL--GMSEV------------- 137 (172)
T ss_dssp HHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHCC--CC--EEEEE-------------
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccC--CCEEEEEECccCCcc--hh--hhhhc-------------
Confidence 122345789999999998555544555555555543222 389999999997432 00 00000
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.... ....|++++.++.++++.|.+.+
T Consensus 138 ~~~~-----~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 138 NGHA-----LIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TTEE-----EEECCTTTCTTHHHHHHHHHHHC
T ss_pred cCCc-----eEEEeCCCCCCHHHHHHHHHHHh
Confidence 1111 12578888999999999887654
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-15 Score=122.11 Aligned_cols=168 Identities=13% Similarity=0.054 Sum_probs=99.6
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
+.....+|+|+|..|+|||||++.|++...... ....|+......+.. .+..+.++||||... +.
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~---~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~ 77 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK---HITATVGYNVETFEK-GRVAFTVFDMGGAKK-----------FR 77 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC-------CCCCCSSEEEEEEEE-TTEEEEEEEECCSGG-----------GG
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc---ccccccceeEEEEEe-CCEEEEEEECCCCHh-----------HH
Confidence 345567999999999999999999997764111 111222233333333 678899999999653 22
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccc------cccceEEEEeCCCCCCcchhhHHHHhccCCCc
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKN------VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPK 167 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~------~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~ 167 (363)
......+..+|++++|+|+++..+-... .++..+....... ...++++|+||+|+... ...+++...
T Consensus 78 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~---- 151 (199)
T 4bas_A 78 GLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVEI---- 151 (199)
T ss_dssp GGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHHH----
T ss_pred HHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHHH----
Confidence 2333456789999999999844332222 2333332211100 12389999999999865 333333332
Q ss_pred hHH--HHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 168 PLK--EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 168 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+. .+....+..+ ..+|++.+.++.++++.|...+..
T Consensus 152 -~~~~~~~~~~~~~~------~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 152 -LDLTTLMGDHPFVI------FASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp -HTHHHHHTTSCEEE------EECBTTTTBTHHHHHHHHHHHHHH
T ss_pred -hcchhhccCCeeEE------EEeeCCCccCHHHHHHHHHHHHHH
Confidence 21 1112222222 256788889999999988876654
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=143.46 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=105.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~~~ 95 (363)
...+|+|+|.+|+|||||+|.|+|.......... +.|.+.....+.+ ++..+.++||||+........ +....+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~-gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~- 250 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA-GTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLR- 250 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHH-
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCC-CceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHH-
Confidence 4479999999999999999999987642221222 2233333334444 677899999999854321100 1011111
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...++..+|++++|+|+++..+..+..++..+.. .+ .++++|+||+|+........+++... +...+..
T Consensus 251 -~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~-~~----~~iiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~l~~ 319 (436)
T 2hjg_A 251 -ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-AG----KAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQF 319 (436)
T ss_dssp -HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CEEEEEEECGGGSCCCTTHHHHHHHH-----HHHHCGG
T ss_pred -HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH-cC----CcEEEEEECccCCCcchHHHHHHHHH-----HHHhccc
Confidence 1112345799999999987888777766555543 12 38999999999886522223333333 3333322
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
.....+ ...|++++.++.++++.+...+...
T Consensus 320 ~~~~~~-----~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 320 LDYAPI-----LFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp GTTSCE-----EECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred CCCCCE-----EEEecccCCCHHHHHHHHHHHHHHh
Confidence 222222 2568888999999999888877653
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=142.72 Aligned_cols=177 Identities=16% Similarity=0.182 Sum_probs=110.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCCh--HHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~~~~ 94 (363)
....+|+|+|.+|+|||||+|.|+|...+......+ .|.+.....+.. ++..+++|||||+....... .+-...+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~g-tt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAG-TTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCC-eEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 455799999999999999999999876433222222 233333333444 77789999999976422110 01011111
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
...+...+|++++|+|++..+...+..++..+.. .+ .++++|+||||+........+++... +...+.
T Consensus 271 --~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~-~~----~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~ 338 (456)
T 4dcu_A 271 --ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-AG----KAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQ 338 (456)
T ss_dssp --HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CEEEEEEECGGGSCCCSSHHHHHHHH-----HHHHCG
T ss_pred --HHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH-cC----CCEEEEEEChhcCCCchHHHHHHHHH-----HHHhcc
Confidence 1112346799999999987888887777766655 23 38999999999886422333443333 333333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHcC
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 212 (363)
......+ ..+|++++.++.++++.+...+....
T Consensus 339 ~~~~~~~-----~~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 339 FLDYAPI-----LFMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp GGTTSCE-----EECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred cCCCCCE-----EEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 2222222 25688899999999999888776543
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-15 Score=124.67 Aligned_cols=174 Identities=16% Similarity=0.090 Sum_probs=97.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHH-H-HHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF-V-GKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-~-~~~~~~ 95 (363)
...+|+|+|..|+|||||+|.|++.... .... ...|.......... .+..+.++||||..+....... + ...+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~-~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQSY-SFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC------CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCC-CCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4589999999999999999999987542 1111 12233333333344 5678899999998653211110 0 111111
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHH-HhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED-FLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~-~~~~~~~~~~~~~~~ 174 (363)
.....|++++|+|+++..+-.....+.++..+.......|+++|+||+|+... ..+.. .... +..+..
T Consensus 105 ----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~-----~~~~~~ 173 (228)
T 2qu8_A 105 ----LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM--DSLSIDNKLL-----IKQILD 173 (228)
T ss_dssp ----HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC----CCCHHHHHH-----HHHHHH
T ss_pred ----hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc--hhhHHHHHHH-----HHHHHH
Confidence 23466899999999844332222223333333221112389999999998754 22111 1111 333444
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+....+ ...|++.+.++.++++.|...+.
T Consensus 174 ~~~~~~~~----~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 174 NVKNPIKF----SSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp HCCSCEEE----EECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCCceE----EEEecccCCCHHHHHHHHHHHHH
Confidence 33311111 25678888999999998777653
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-14 Score=121.99 Aligned_cols=164 Identities=20% Similarity=0.203 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|+|++|||||||+|+|+|... ..+.. .++|.......+.+ ++..+.++||||+.+....... ..+.+. ..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~-~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~-~~ 77 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQ-HVGNW-PGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSID--ELIARN-FI 77 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCE-EEEEC-TTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHH--HHHHHH-HH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc-ccCCC-CCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHH--HHHHHH-hh
Confidence 6999999999999999999998864 22222 23455555555555 7778999999998865432221 122222 22
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
....+|++++|+|++ .. ......+..+... +. .|+++|+||+|+... .. .. .....+...++..
T Consensus 78 ~~~~~d~vi~v~D~~-~~-~~~~~~~~~~~~~-~~---~p~ilv~NK~Dl~~~--~~----~~----~~~~~l~~~lg~~ 141 (271)
T 3k53_A 78 LDGNADVIVDIVDST-CL-MRNLFLTLELFEM-EV---KNIILVLNKFDLLKK--KG----AK----IDIKKMRKELGVP 141 (271)
T ss_dssp HTTCCSEEEEEEEGG-GH-HHHHHHHHHHHHT-TC---CSEEEEEECHHHHHH--HT----CC----CCHHHHHHHHSSC
T ss_pred hccCCcEEEEEecCC-cc-hhhHHHHHHHHhc-CC---CCEEEEEEChhcCcc--cc----cH----HHHHHHHHHcCCc
Confidence 235789999999987 32 1222222222221 21 389999999996533 11 00 0133344444433
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
++ .+|+..+.++.++++.+...+...
T Consensus 142 ~~------~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 142 VI------PTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp EE------ECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred EE------EEEeCCCCCHHHHHHHHHHHHhcc
Confidence 33 568888999999999999887654
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-16 Score=131.14 Aligned_cols=161 Identities=16% Similarity=0.170 Sum_probs=99.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~~~~~ 97 (363)
.+|+|+|.+|||||||+|.|+|.....+ .. .++|++.....+.+ ++..+.++||||......... ...+.+.+..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~-~~-pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVG-NW-PGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEE-EC-TTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCcc-CC-CCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 4899999999999999999999864222 22 33455555555555 778999999999876542100 1122233222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
. ....+|++++|+|++ .+ ...+.+...+... ..|+++|+||+|.... ..+.. ....+...++
T Consensus 79 ~-~~~~~d~vi~VvDas-~~----~~~~~l~~~l~~~--~~pvilv~NK~Dl~~~--~~~~~--------~~~~l~~~lg 140 (256)
T 3iby_A 79 V-IDLEYDCIINVIDAC-HL----ERHLYLTSQLFEL--GKPVVVALNMMDIAEH--RGISI--------DTEKLESLLG 140 (256)
T ss_dssp H-HHSCCSEEEEEEEGG-GH----HHHHHHHHHHTTS--CSCEEEEEECHHHHHH--TTCEE--------CHHHHHHHHC
T ss_pred H-hhCCCCEEEEEeeCC-Cc----hhHHHHHHHHHHc--CCCEEEEEEChhcCCc--CCcHH--------HHHHHHHHcC
Confidence 2 125789999999998 31 1222222222221 2389999999997643 11110 1223333334
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
..++ ..|+..+.++.+|++.+.+.
T Consensus 141 ~~vi------~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 CSVI------PIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp SCEE------ECBGGGTBSHHHHHHHHHTC
T ss_pred CCEE------EEECCCCCCHHHHHHHHHhh
Confidence 3333 56888899999999998877
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=118.42 Aligned_cols=158 Identities=21% Similarity=0.240 Sum_probs=98.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|+|..|+|||||+|.|++........ ..+.+.......... ++..+.++||||....... ...+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~----~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVAD-VPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDKW----EKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSSC----CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccC-CCCceecceEEEEEe-CCceEEEEECCCCCCccch----HHHHHHHHHH
Confidence 489999999999999999999765311111 122233333444444 6778999999998763211 1223333334
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
.....|++++|+|.++.++..+......+.. .+ .|+++|+||+|+... . +.... +. ..+.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~p~ilv~nK~Dl~~~--~---~~~~~--------~~-~~~~- 135 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRR-KG----KPVILVATKVDDPKH--E---LYLGP--------LY-GLGF- 135 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHH-HT----CCEEEEEECCCSGGG--G---GGCGG--------GG-GGSS-
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHh-cC----CCEEEEEECcccccc--h---HhHHH--------HH-hCCC-
Confidence 4567899999999986777766655555544 22 289999999998754 1 11111 11 1121
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
......|++.+.++.++++.+.+.
T Consensus 136 ----~~~~~~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 136 ----GDPIPTSSEHARGLEELLEAIWER 159 (161)
T ss_dssp ----CSCEECBTTTTBSHHHHHHHHHHH
T ss_pred ----CCeEEEecccCCChHHHHHHHHHh
Confidence 122366788889999999877654
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-15 Score=117.04 Aligned_cols=162 Identities=15% Similarity=0.081 Sum_probs=96.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|..|+|||||+|.|++.... . ...|.......+.+ ++..+.++||||... +....
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~----~-~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~~ 68 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV----T-TIPTIGFNVETVTY-KNLKFQVWDLGGLTS-----------IRPYW 68 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC----C-CCCCSSEEEEEEEE-TTEEEEEEEECCCGG-----------GGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC----C-cCCcCccceEEEEE-CCEEEEEEECCCChh-----------hhHHH
Confidence 3479999999999999999999866531 1 11233333344445 678899999999653 12223
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...|++++|+|+++..+-... ..+..+..... ....|+++|+||+|+... ...+++... +. ....
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~~ 138 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQA--MTSSEMANS-----LG--LPAL 138 (171)
T ss_dssp GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----HT--GGGC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcCC--CCHHHHHHH-----hC--chhc
Confidence 3455688999999999844333222 22222221110 012389999999998755 222222211 10 0001
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
....+ .....|+..+.++.++++.+.+.+.
T Consensus 139 ~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 139 KDRKW---QIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp TTSCE---EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCce---EEEECcCCCCcCHHHHHHHHHHHHh
Confidence 11111 1125678888999999998877664
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.2e-15 Score=141.05 Aligned_cols=123 Identities=17% Similarity=0.218 Sum_probs=75.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCc-eee--------EeE---------------------------
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT-KTC--------EMK--------------------------- 61 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t-~~~--------~~~--------------------------- 61 (363)
...+|+|+|..|+|||||+|+|+|......+...++.. +.. ...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 45799999999999999999999987643322222210 000 000
Q ss_pred ----------------EEEeeC---CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHH
Q 017924 62 ----------------TTVLKD---GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE 122 (363)
Q Consensus 62 ----------------~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~ 122 (363)
.+.+.. ...++||||||+.+... ...........+|++++|+|+++.++..+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~ 219 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGER 219 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhHH
Confidence 000000 03688999999765211 112222233468999999999877787776
Q ss_pred HHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 123 TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+.......+ .++++|+||+|....
T Consensus 220 ~~l~~~l~~~~----~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 220 RYLENYIKGRG----LTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHHTTTSC----CCEEEEEECGGGGGG
T ss_pred HHHHHHHHhhC----CCEEEEEECcccccc
Confidence 55432211112 379999999998644
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.9e-16 Score=131.56 Aligned_cols=177 Identities=16% Similarity=0.182 Sum_probs=107.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCCh--HHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~~~~~~ 96 (363)
..+|+|+|.+|||||||+|+|+|... ..+.. .++|+......+.+ .+..+.++||||..+..... ....+.+.+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~-~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNW-AGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEEC-TTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCC-CCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 37999999999999999999999874 22222 23455555555555 67789999999988754210 1122233322
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
+ .....+|++++|+|++ .+ ......+..+... + .|+++|+||+|.... ..+. . ....+...+
T Consensus 80 ~-~~~~~~d~ii~VvD~~-~~-~~~~~~~~~l~~~-~----~p~ivv~NK~Dl~~~--~~~~---~-----~~~~l~~~l 141 (274)
T 3i8s_A 80 Y-ILSGDADLLINVVDAS-NL-ERNLYLTLQLLEL-G----IPCIVALNMLDIAEK--QNIR---I-----EIDALSARL 141 (274)
T ss_dssp H-HHHTCCSEEEEEEEGG-GH-HHHHHHHHHHHHH-T----CCEEEEEECHHHHHH--TTEE---E-----CHHHHHHHH
T ss_pred H-HhhcCCCEEEEEecCC-Ch-HHHHHHHHHHHhc-C----CCEEEEEECccchhh--hhHH---H-----HHHHHHHhc
Confidence 2 2235789999999987 32 2223333333332 2 389999999997543 1110 0 122333333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHHcC--CCCCCHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG--GQPYTDELKR 222 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~ 222 (363)
+..++ ..|+..+.++.+|++.+...+.... ...|...+..
T Consensus 142 g~~~i------~~SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~~l~~ 183 (274)
T 3i8s_A 142 GCPVI------PLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLN 183 (274)
T ss_dssp TSCEE------ECCCGGGHHHHHHHHHHHTCCCCCCCCCCCCCHHHHH
T ss_pred CCCEE------EEEcCCCCCHHHHHHHHHHHHhcCCCcccCCCHHHHH
Confidence 43333 5678889999999998877654321 1235555544
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-15 Score=121.07 Aligned_cols=160 Identities=14% Similarity=0.076 Sum_probs=93.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|..|+|||||+|.|++... ......|....+..+.. .+..+.++||||... +....
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~ 84 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQF----NEDMIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMW 84 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC----CCSCCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCC----CCccCCCCceeEEEEEe-CCEEEEEEECCCCHh-----------HHHHH
Confidence 357999999999999999999997653 11112233333333444 678899999999532 22222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...+..+|++++|+|+++.-+-.. ...++..+... ....++++|+||+|+... ...+++... +.. ..
T Consensus 85 ~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~~~--~~ 153 (188)
T 1zd9_A 85 ERYCRGVSAIVYMVDAADQEKIEA--SKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEK-----MNL--SA 153 (188)
T ss_dssp HHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHH-----TTG--GG
T ss_pred HHHHccCCEEEEEEECCCHHHHHH--HHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHH-----hCh--hh
Confidence 233457899999999873322222 12222222211 122389999999998754 222222221 100 00
Q ss_pred c-CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 C-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
. .....+ ...|++.+.++.++++.|...+
T Consensus 154 ~~~~~~~~----~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 154 IQDREICC----YSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp CCSSCEEE----EECCTTTCTTHHHHHHHHHHTC
T ss_pred hccCCeeE----EEEECCCCCCHHHHHHHHHHHH
Confidence 0 111111 2568888899999999876644
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.7e-15 Score=118.85 Aligned_cols=163 Identities=13% Similarity=0.068 Sum_probs=99.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|..|+|||||+|.|++... ... ..|.......+.+ ++..+.++||||.. .+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~---~~t~~~~~~~~~~-~~~~~~~~Dt~G~~-----------~~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDV--DTI---SPTLGFNIKTLEH-RGFKLNIWDVGGQK-----------SLRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCC--SSC---CCCSSEEEEEEEE-TTEEEEEEEECCSH-----------HHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC--Ccc---cccCccceEEEEE-CCEEEEEEECCCCH-----------hHHHH
Confidence 4568999999999999999999997662 111 1122233334444 67889999999953 23334
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+-.+. ..+..+..... ....|+++|+||+|+... ...++.... +. +..
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~ 148 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGA--LSCNAIQEA-----LE--LDS 148 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGG
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCCC--CCHHHHHHH-----hC--hhh
Confidence 44556789999999999744332221 22222222111 112389999999998754 322222211 10 000
Q ss_pred c-CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 C-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
. ...+. ....|++.+.++.++++.+.+.+..
T Consensus 149 ~~~~~~~----~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 149 IRSHHWR----IQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp CCSSCEE----EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ccCCceE----EEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 1 11111 1256788899999999998887754
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.64 E-value=6.7e-15 Score=123.75 Aligned_cols=162 Identities=19% Similarity=0.188 Sum_probs=101.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|.+|+|||||+|.|+|..... +... ++|+......+.. .+..+.++||||......... .+.+.+.+.
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~-~~~p-g~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~~ 79 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYV-ANWP-GVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARDYL 79 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEE-EECT-TSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcc-cCCC-CceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHHHH
Confidence 4799999999999999999999876432 2222 3455544444444 678899999999876543221 122222222
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
. ...+|++++|+|++ .+.. ...++..+.. .. .|+++|+||+|.... ..+. .....+...++.
T Consensus 80 ~-~~~~d~ii~V~D~t-~~~~-~~~~~~~l~~---~~--~pvilv~NK~Dl~~~--~~i~--------~~~~~l~~~lg~ 141 (258)
T 3a1s_A 80 L-KGDADLVILVADSV-NPEQ-SLYLLLEILE---ME--KKVILAMTAIDEAKK--TGMK--------IDRYELQKHLGI 141 (258)
T ss_dssp H-HSCCSEEEEEEETT-SCHH-HHHHHHHHHT---TT--CCEEEEEECHHHHHH--TTCC--------BCHHHHHHHHCS
T ss_pred h-hcCCCEEEEEeCCC-chhh-HHHHHHHHHh---cC--CCEEEEEECcCCCCc--cchH--------HHHHHHHHHcCC
Confidence 1 14789999999998 4322 2222233322 12 389999999997533 1110 113334444443
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.++ ..|+..+.++.+|++.+.....
T Consensus 142 ~vi------~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 142 PVV------FTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred CEE------EEEeeCCcCHHHHHHHHHHHhh
Confidence 333 5678889999999999988765
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-15 Score=120.51 Aligned_cols=159 Identities=20% Similarity=0.185 Sum_probs=91.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee-eEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||+|.|++... ......|+. ........ ++. .+.++||||....... .
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~--------~ 69 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHF----VDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAM--------R 69 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSC----CCCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTT--------H
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHH--------H
Confidence 347999999999999999999997653 111122222 22222233 443 4678999996653211 1
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
. ..+...|++++|+++++..+... ..++..+..... ....|+++|+||+|+... ....+. ...+.
T Consensus 70 ~---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~--~~~~~~--------~~~~~ 135 (189)
T 4dsu_A 70 D---QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSR--TVDTKQ--------AQDLA 135 (189)
T ss_dssp H---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSC--SSCHHH--------HHHHH
T ss_pred H---HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCccc--ccCHHH--------HHHHH
Confidence 1 11224699999999873322122 223334443322 122389999999998754 222222 22233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
...+..++ ..|+..+.++.++++.+...+.
T Consensus 136 ~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 136 RSYGIPFI------ETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp HHHTCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 33343333 4577788999999998777654
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=120.63 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=96.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||+|.|++.... .....+.+.......+.+ ++ ..+.++||||..... .
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~ 73 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS--GSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFR-----------T 73 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCS-----------S
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC--CccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhh-----------h
Confidence 3479999999999999999999977541 122223333333444444 44 578899999954321 1
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.....+...|++++|+|+++..+... ..++..+..... ..|+++|+||+|+........++ ...+..
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~ 141 (181)
T 3tw8_B 74 ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERKVVETED---------AYKFAG 141 (181)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhcccCHHH---------HHHHHH
Confidence 22234567899999999874322222 123333333322 23899999999976541111111 222333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+..++ ..|+..+.++.++++.+.+.+.
T Consensus 142 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 142 QMGIQLF------ETSAKENVNVEEMFNCITELVL 170 (181)
T ss_dssp HHTCCEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 3343333 4677788999999998877653
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-15 Score=122.33 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=71.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||++.|++... .. ... ++......+.+.+ +..+.++||||... ....+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~-~~---~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~- 71 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQY-RD---TQT-SITDSSAIYKVNNNRGNSLTLIDLPGHES-------LRFQL- 71 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCC-CC---BCC-CCSCEEEEEECSSTTCCEEEEEECCCCHH-------HHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc-cc---ccC-CcceeeEEEEecCCCccEEEEEECCCChh-------HHHHH-
Confidence 3457999999999999999999997653 21 111 2222233344422 56799999999542 11112
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhc----cccccceEEEEeCCCCCCc
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG----KNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~i~v~n~~D~~~~ 152 (363)
....+.++|++++|+|++ .+..........+...+. .....|+++|.||+|+...
T Consensus 72 --~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 72 --LDRFKSSARAVVFVVDSA-AFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp --HHHHGGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred --HHHHHhhCCEEEEEEECC-CcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 222356789999999987 332222233333332211 1112389999999999765
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=123.36 Aligned_cols=161 Identities=12% Similarity=0.081 Sum_probs=97.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE-EEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|+|..|+|||||+|.|++... ......|+...+.. ... ++ ..+.++||||... +
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~ 84 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI----PTAYVPTVFENFSHVMKY-KNEEFILHLWDTAGQEE-----------Y 84 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC----CSSCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------G
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC----CCccCCeeeeeeEEEEEE-CCEEEEEEEEECCCcHH-----------H
Confidence 3457999999999999999999997653 11112222222222 222 44 3468999999543 2
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcc-hhhHHHHhccCCCchHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLK 170 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~-~~~l~~~~~~~~~~~~~ 170 (363)
.......+..+|++++|+|+++..+-.+ ..++..+..... . .|+++|.||+|+.... +....+. ..
T Consensus 85 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~~~~~~~~~~--------~~ 153 (194)
T 3reg_A 85 DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-T--AKTVLVGLKVDLRKDGSDDVTKQE--------GD 153 (194)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--SEEEEEEECGGGCCTTTTCCCHHH--------HH
T ss_pred HHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccCCCCcccHHH--------HH
Confidence 2233445668899999999984332222 234444444322 2 3899999999987430 0111111 22
Q ss_pred HHHHhcCCc-eEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 171 EILQLCDNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 171 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+....+.. ++ ..|++.+.++.++++.+.+.+..
T Consensus 154 ~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 154 DLCQKLGCVAYI------EASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp HHHHHHTCSCEE------ECBTTTTBSHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCEEE------EeecCCCCCHHHHHHHHHHHHHh
Confidence 333333433 33 46788899999999988776643
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-15 Score=137.39 Aligned_cols=165 Identities=16% Similarity=0.160 Sum_probs=88.1
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+.+|+|+|.+|+|||||+|.|+|.......... +.|.+.....+.+ ++..+.++||||+.+.. ..+.........
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~-gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~---~~ve~~gi~~~~ 307 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMP-GTTRDYIEECFIH-DKTMFRLTDTAGLREAG---EEIEHEGIRRSR 307 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCC-CceEEEEEEEEEE-CCeEEEEEECCCCCcch---hHHHHHHHHHHH
Confidence 468999999999999999999987542111111 2233333344455 78899999999986531 111111122234
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
..+..+|++++|+|+++..+.........+...+. + .++++|+||+|+... ..... .. +... . . .
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~--~piIvV~NK~Dl~~~--~~~~~--~~-----l~~~-~-~-~ 372 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAHP-A--AKFLTVANKLDRAAN--ADALI--RA-----IADG-T-G-T 372 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-T--SEEEEEEECTTSCTT--THHHH--HH-----HHHH-H-T-S
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-C--CCEEEEEECcCCCCc--cchhH--HH-----HHhc-C-C-C
Confidence 45678999999999986666532222222222222 1 389999999999865 32221 11 2111 0 1 1
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
. ....|++++.++.+|++.|...+.
T Consensus 373 ~------~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 373 E------VIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp C------EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred c------eEEEEECCCCCHHHHHHHHHHHHh
Confidence 1 235688899999999999998886
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=9e-15 Score=119.96 Aligned_cols=167 Identities=19% Similarity=0.131 Sum_probs=88.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||++.|++... .. ....+. .......+.. ++ ..+.++||||.... ..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~-~~-~~~~t~-~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-----------~~ 97 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAF-PE-SYTPTV-FERYMVNLQV-KGKPVHLHIWDTAGQDDY-----------DR 97 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCC-CEEEEEEEEE-TTEEEEEEEEEC-------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CC-CCCCcc-ceeEEEEEEE-CCEEEEEEEEECCCchhh-----------hH
Confidence 457999999999999999999997653 11 111111 1111222233 33 36789999995432 12
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc----CC-Cch
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PKP 168 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~----~~-~~~ 168 (363)
.....+..+|++++|+|+++..+-... .++..+..... . .|+++|+||+|+... ....+.+.. .. ...
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 172 (214)
T 2j1l_A 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-K--VPIIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYHR 172 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECGGGGSC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhhcc--chhhhhhcccccCcccHHH
Confidence 222345678999999998733222221 23444443322 2 389999999998765 333222210 00 011
Q ss_pred HHHHHHhcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
...+....+. .++ ..|++.+.++.++++.|.+.+..
T Consensus 173 ~~~~~~~~~~~~~~------~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 173 GQEMARSVGAVAYL------ECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp HHHHHHHTTCSEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence 2334444443 333 56788889999999988776654
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=9.1e-15 Score=117.57 Aligned_cols=159 Identities=19% Similarity=0.159 Sum_probs=90.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
..+|+|+|..|+|||||+|.|++... .. .... ++... ...+.. ++ ..+.++||||.... ..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~-~~~~--t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~ 84 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHF-VD-EYDP--TIEDSYRKQVVI-DGETCLLDILDTAGQEEY-----------SA 84 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CS-CCCT--TCCEEEEEEEEE-TTEEEEEEEEECCC-----------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCC-cc-ccCC--ccceEEEEEEEE-CCEEEEEEEEECCChHHH-----------HH
Confidence 36999999999999999999997653 11 1111 22222 222333 33 35789999995431 22
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.....+...|++++|+++++..+..+ ..++..+..... ....++++|+||+|+... ....+. ...+..
T Consensus 85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~--~~~~~~--------~~~~~~ 153 (190)
T 3con_A 85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTR--TVDTKQ--------AHELAK 153 (190)
T ss_dssp -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCC--CSCHHH--------HHHHHH
T ss_pred HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCcc--cCCHHH--------HHHHHH
Confidence 22334567899999999873322222 223344444332 112389999999998753 211111 222333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
..+..++ ..|+..+.++.++++.|.+.+..
T Consensus 154 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 154 SYGIPFI------ETSAKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp HHTCCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 3333333 45777889999999988776644
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-15 Score=120.65 Aligned_cols=165 Identities=15% Similarity=0.045 Sum_probs=96.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|..|+|||||+|.|++...+... ...|.......+.+ ++..+.++||||..... ..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~~ 83 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKFKS-SSLSFTVFDMSGQGRYR-----------NL 83 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEEEC-SSCEEEEEEECCSTTTG-----------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEEEE-CCEEEEEEECCCCHHHH-----------HH
Confidence 44589999999999999999999987632221 12233333344444 57889999999965421 12
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhcc-ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+..+|++++|+|+++..+-.. ...+..+...... ....++++|+||+|+... ...++.... +. +.
T Consensus 84 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~ 154 (190)
T 2h57_A 84 WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQL-----LC--LE 154 (190)
T ss_dssp GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHH-----HT--GG
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHH-----hC--hh
Confidence 2334467899999999873221111 1223333222110 012489999999999754 222222111 10 01
Q ss_pred hcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.... .+.+ ...|++.+.++.++++.|.+.+.
T Consensus 155 ~~~~~~~~~----~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 155 NIKDKPWHI----CASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp GCCSSCEEE----EECBTTTTBTHHHHHHHHHHHC-
T ss_pred hccCCceEE----EEccCCCCcCHHHHHHHHHHHHH
Confidence 1111 1111 25688888999999998877653
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-15 Score=121.21 Aligned_cols=161 Identities=19% Similarity=0.170 Sum_probs=97.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++.... . ....+.+.......+.. ++ ..+.++||||...... .
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~ 81 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYT-E-SYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT-----------I 81 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-S-CCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCT-----------T
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-C-CCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhh-----------h
Confidence 479999999999999999999976531 1 22223333344444444 44 4688999999543211 1
Q ss_pred HhccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|+++..+.. ...++..+....... .++++|+||+|+........+ . ...+...
T Consensus 82 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~~~~~~-~--------~~~~~~~ 150 (196)
T 3tkl_A 82 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKKVVDYT-T--------AKEFADS 150 (196)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHH-H--------HHHHHHH
T ss_pred HHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccccCHH-H--------HHHHHHH
Confidence 112235689999999987322211 123444444443323 389999999998754111111 1 2223334
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+..++ ..|+..+.++.++++.|.+.+..
T Consensus 151 ~~~~~~------~~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 151 LGIPFL------ETSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp TTCCEE------EECTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCcEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 444444 45777889999999988776644
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-15 Score=135.55 Aligned_cols=177 Identities=19% Similarity=0.200 Sum_probs=100.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH-HH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-KC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~ 96 (363)
...+|+|||++|||||||+|.|+|..........+ .|.+.....+.+ ++..+.++||+|+........+....+. ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~g-tT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPG-TTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCC-CcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 34799999999999999999999886422222222 232333333444 7778899999997432110000000000 00
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
........|++++++|+....+..+......+.. .+ .++++|+||||+........+++... +...+...
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~~----~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~ 326 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMER-RG----RASVVVFNKWDLVVHREKRYDEFTKL-----FREKLYFI 326 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CEEEEEEECGGGSTTGGGCHHHHHHH-----HHHHCGGG
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccCCCchhhHHHHHHHH-----HHHHhccC
Confidence 0112235689999999886677666544444332 23 28999999999876422223333322 22222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
....+ ...|++++.++.+|++.+.......
T Consensus 327 ~~~~~-----~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 327 DYSPL-----IFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp TTSCE-----EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCcE-----EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 22222 2568889999999999998877654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-15 Score=135.17 Aligned_cols=165 Identities=19% Similarity=0.216 Sum_probs=102.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|||.+|+|||||+|.|+|......... .++|.+.....+.+ ++..+.++||+|+.... ...+...+......
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~-~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDE-EGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCC-CCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence 3799999999999999999998764211122 22344444555566 78889999999987421 11112334444445
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
++..+|++++|+|+...++..+.....++... + .++++|+||+|.... . .... ..++. ..+.
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-~----~p~ilv~NK~D~~~~--~--~~~~-------~~~~~-~lg~- 139 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-T----VDTILVANKAENLRE--F--EREV-------KPELY-SLGF- 139 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-T----CCEEEEEESCCSHHH--H--HHHT-------HHHHG-GGSS-
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEeCCCCccc--c--HHHH-------HHHHH-hcCC-
Confidence 56789999999999877887776665555542 2 389999999997522 1 1111 01122 1121
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
......|+..+.++.+|++.+...+..
T Consensus 140 ----~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 140 ----GEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp ----CSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ----CCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 112356888999999999998877754
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=122.48 Aligned_cols=165 Identities=18% Similarity=0.098 Sum_probs=94.0
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeCCc--EEEEEeCCCCCCCCCChHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE 92 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~ 92 (363)
.....+|+|+|..|+|||||++.+++... ......++...+. .+.. ++. .+.++||||....
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~---------- 91 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAF----PGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDY---------- 91 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCC----CC-CCCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGG----------
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCC----CCCcCCeecceeEEEEEE-CCEEEEEEEEECCCchhh----------
Confidence 45568999999999999999999986543 1111122222222 2222 443 4559999996432
Q ss_pred HHHHHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc----CC-
Q 017924 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC- 165 (363)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~----~~- 165 (363)
.......+..+|++++|+|+++..+..+. .++..+..... . .++++|+||+|+... ....+.+.. ..
T Consensus 92 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~ 165 (204)
T 4gzl_A 92 -DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD--KDTIEKLKEKKLTPIT 165 (204)
T ss_dssp -TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECHHHHTC--HHHHHHHHHTTCCCCC
T ss_pred -HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhccc--hhhhhhhhcccccccc
Confidence 22233456688999999998733332222 23444444331 2 389999999998765 222221111 00
Q ss_pred CchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
......+....+...++ ..|++.+.++.++++.+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~-----~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 166 YPQGLAMAKEIGAVKYL-----ECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp HHHHHHHHHHTTCSEEE-----ECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEE-----EeeCCCCCCHHHHHHHHHH
Confidence 01122333333332222 5688889999999988765
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-15 Score=120.77 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=92.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||+|.|++.... . ....+.+.+.....+.+ ++ ..+.++||||.... .....
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-------~~~~~ 93 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFC-E-ACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF-------NSITS 93 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGG-------HHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-c-CCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHH-------HHHHH
Confidence 34579999999999999999999976531 1 11222333333334444 43 46889999995431 11111
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
..+...|++++|+|+++..+..+ ..++..+....... .++++|+||+|+........+ . ...+.
T Consensus 94 ----~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~~~v~~~-~--------~~~~~ 158 (192)
T 2il1_A 94 ----AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETDREITRQ-Q--------GEKFA 158 (192)
T ss_dssp ----HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHH-H--------HHHHH
T ss_pred ----HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHH-H--------HHHHH
Confidence 12235799999999873333222 22334444433222 389999999998643101111 1 22233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.......++ ..|++.+.++.++++.|.+.+.
T Consensus 159 ~~~~~~~~~-----~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 159 QQITGMRFC-----EASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp HTSTTCEEE-----ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HhcCCCeEE-----EEeCCCCCCHHHHHHHHHHHHH
Confidence 332222222 5678888999999998876653
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=116.29 Aligned_cols=161 Identities=20% Similarity=0.101 Sum_probs=83.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..+|+|+|..|+|||||+|.|+|......... ..++.. ...... ....+.++||+|.... ....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~ 66 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEA--AGHTYD--RSIVVDGEEASLMVYDIWEQDGG-----------RWLP 66 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------CEEE--EEEEETTEEEEEEEEECC--------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCc--cccceE--EEEEECCEEEEEEEEECCCCccc-----------hhhh
Confidence 37999999999999999999997654211111 112211 122221 2346789999996542 1122
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...|++++|+|+++.-+-.. ..++..+..... ....|+++|.||+|+........+ . ...+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~-~--------~~~~~~~~ 136 (166)
T 3q72_A 67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVD-E--------GRACAVVF 136 (166)
T ss_dssp ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHH-H--------HHHHHHHT
T ss_pred hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHH-H--------HHHHHHHh
Confidence 233457899999999873322122 222333332211 112389999999998754111111 1 11223333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+..++ ..|+..+.++.++++.+.+.+..
T Consensus 137 ~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 137 DCKFI------ETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp TCEEE------ECBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCcEE------EeccCCCCCHHHHHHHHHHHHHh
Confidence 33333 56888899999999988776643
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.3e-15 Score=116.64 Aligned_cols=159 Identities=15% Similarity=0.135 Sum_probs=93.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++.... . ....+.+.......+.. ++ ..+.++||||... +...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~-~-~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~ 71 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFN-D-KHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQER-----------FHAL 71 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCC-S-SCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC-----------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-c-CCCCccceEEEEEEEEE-CCEEEEEEEEECCCcHh-----------hhhh
Confidence 479999999999999999999976531 1 11111222222222333 33 3678899999543 2223
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|+++..+... ..++..+....... .++++|+||+|+........++ ...+...
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 140 (170)
T 1z08_A 72 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVSIQE---------AESYAES 140 (170)
T ss_dssp -CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 3445668899999999873322222 23344444444333 3899999999986531111111 2233344
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|+..+.++.++++.+.+.+
T Consensus 141 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 141 VGAKHY------HTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp TTCEEE------EEBTTTTBSHHHHHHHHHHHH
T ss_pred cCCeEE------EecCCCCCCHHHHHHHHHHHH
Confidence 343333 467788899999999887655
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.6e-15 Score=117.04 Aligned_cols=161 Identities=19% Similarity=0.171 Sum_probs=94.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||+|.|++... .. ....|+... ...... ++ ..+.++||||......
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~---------- 69 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VD---SYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSI---------- 69 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CS---CCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCC----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CC---CCCCCccccEEEEEEE-CCEEEEEEEEeCCCchhhhH----------
Confidence 347999999999999999999985543 11 111222222 222233 44 4668999999765321
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
.....+...|++++|+|+++.-+... ..++..+...+.. ...|+++|+||+|+........+ . ...+.
T Consensus 70 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~-~--------~~~~~ 138 (181)
T 3t5g_A 70 -FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISYE-E--------GKALA 138 (181)
T ss_dssp -CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHH-H--------HHHHH
T ss_pred -HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecHH-H--------HHHHH
Confidence 12234457899999999873222222 2233333333221 12389999999998643111111 1 22333
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
...+..++ ..|+..+.++.++++.+...+..
T Consensus 139 ~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 139 ESWNAAFL------ESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp HHTTCEEE------ECCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHhCCcEE------EEecCCCCCHHHHHHHHHHHHHH
Confidence 44444333 46788899999999988877654
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=5.6e-15 Score=118.51 Aligned_cols=160 Identities=15% Similarity=0.068 Sum_probs=92.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|..|+|||||+|.|++.......++.+ .....+.+ ++..+.++||||..... ...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~-----~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~~ 77 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG-----SNVEEIVI-NNTRFLMWDIGGQESLR-----------SSW 77 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC-----SSCEEEEE-TTEEEEEEECCC----C-----------GGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCc-----cceEEEEE-CCEEEEEEECCCCHhHH-----------HHH
Confidence 45899999999999999999999655322222221 12223334 67889999999975421 111
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++|+|+++.-+-.. ..++..+..... ....++++|+||+|+... ...++.... +.. ...
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~~--~~~ 147 (187)
T 1zj6_A 78 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQF-----LKL--TSI 147 (187)
T ss_dssp HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----HTG--GGC
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCC--CCHHHHHHH-----hCh--hhh
Confidence 222357899999999984433332 223333322210 112389999999998754 222222111 100 001
Q ss_pred C-CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
. ..+. ....|+..+.++.++++.|.+.+
T Consensus 148 ~~~~~~----~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 148 KDHQWH----IQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp CSSCEE----EEECBTTTTBTHHHHHHHHHHHH
T ss_pred cCCCcE----EEEccCCCCcCHHHHHHHHHHHH
Confidence 1 1111 12568888999999999887765
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=137.83 Aligned_cols=161 Identities=18% Similarity=0.193 Sum_probs=95.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+.+|+|+|.+|+|||||+|.|+|......... .+.|.+.....+.+ ++..++++||||+.+.. ..+...-.....
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~-~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~---~~ve~~gi~~~~ 298 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDL-PGTTRDVVESQLVV-GGIPVQVLDTAGIRETS---DQVEKIGVERSR 298 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCC-TTCCHHHHHHEEEE-TTEEEEECC-----------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCC-CCeeEEEEEEEEEE-CCEEEEEEECCccccch---hHHHHHHHHHHh
Confidence 46899999999999999999998754211111 22233333333444 78889999999986531 111111122233
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.....+|++++|+|.++.++..+..++..+.. .|+++|+||+|+... .... .+.. +. ...
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~--~~~~-~~~~-----~~-----~~~ 358 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK--QLIT-SLEY-----PE-----NIT 358 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG--GGST-TCCC-----CT-----TCC
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc--hhhH-HHHH-----hc-----cCC
Confidence 45568899999999987777776555554432 289999999998765 2211 1111 10 011
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
. ....|++.+.++.+|++.|.+.+..
T Consensus 359 ~------~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 359 Q------IVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp C------EEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred c------EEEEECCCCCCHHHHHHHHHHHHhc
Confidence 1 2356888899999999999888754
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=7.4e-15 Score=115.09 Aligned_cols=158 Identities=13% Similarity=0.079 Sum_probs=91.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|+|..|+|||||+|.|++... .. . ..|.......+.. .+..+.++||||... +......
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~-~~---~-~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~ 63 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEI-VT---T-IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH 63 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCS-SC---C-CCCSSCCEEEEEC-SSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCc-Cc---c-cCcCceeEEEEEE-CCEEEEEEEcCCChh-----------hHHHHHH
Confidence 3799999999999999999986653 11 1 1122222223333 567899999999643 1122223
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
.+..+|++++|+|+++.-+-.. ...++...... ....|+++|.||+|+... ...+++... +. .....
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~~~ 132 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDK-----LG--LHSLR 132 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGCS
T ss_pred HhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHH-----hC--ccccc
Confidence 4567899999999874422222 11223332221 112389999999998754 222222221 10 00011
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+. ....|+..+.++.++++.+...+
T Consensus 133 ~~~~~---~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 133 HRNWY---IQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp SCCEE---EEECBTTTTBTHHHHHHHHHHHC
T ss_pred CccEE---EEEcccCCCcCHHHHHHHHHHHH
Confidence 11111 22568888999999999877654
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-14 Score=114.50 Aligned_cols=160 Identities=18% Similarity=0.149 Sum_probs=91.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++... .. ....+.. ......+.. ++ ..+.++||||.... ..+...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~-~~~~~~~-~~~~~~~~~-~~~~~~~~l~D~~G~~~~--------~~~~~~ 70 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTF-IE-KYDPTIE-DFYRKEIEV-DSSPSVLEILDTAGTEQF--------ASMRDL 70 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC-CS-CCCTTCC-EEEEEEEEE-TTEEEEEEEEECCCTTCC--------HHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC-cc-cCCCCcc-eeEEEEEEE-CCEEEEEEEEECCCchhh--------HHHHHH
Confidence 47999999999999999999986653 11 1111111 111222333 33 35789999996542 111111
Q ss_pred HhccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.....|++++|+|+++..+.. ....+..+...... ...|+++|+||+|+........+ . ...+...
T Consensus 71 ---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~ 137 (167)
T 1kao_A 71 ---YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVSSS-E--------GRALAEE 137 (167)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCSCHH-H--------HHHHHHH
T ss_pred ---HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccccccCCHH-H--------HHHHHHH
Confidence 123468999999987322211 12333344443321 12389999999998643111111 1 1223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.+..++ ..|+..+.++.++++.+.+.+.
T Consensus 138 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 138 WGCPFM------ETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HTSCEE------EECTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCEE------EecCCCCcCHHHHHHHHHHHHh
Confidence 333333 4578889999999998877654
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-15 Score=119.88 Aligned_cols=162 Identities=17% Similarity=0.103 Sum_probs=95.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
...+|+|+|..|+|||||+|.|++..... ....+.........+... ....+.++||||...... .
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~ 87 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTP--AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT-----------I 87 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC-----------S
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC--CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh-----------h
Confidence 34799999999999999999999765311 111112222222223331 134788999999665321 1
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+... ..++..+....... .++++|+||+|+........+ . ...+...
T Consensus 88 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~ 156 (189)
T 2gf9_A 88 TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLEDERVVPAE-D--------GRRLADD 156 (189)
T ss_dssp GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH-H--------HHHHHHH
T ss_pred HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccCCCHH-H--------HHHHHHH
Confidence 2334567899999999873322221 23344444432222 389999999998653101111 1 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.+..++ ..|+..+.++.++++.|...+.
T Consensus 157 ~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 157 LGFEFF------EASAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp HTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred cCCeEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 343333 4677888999999998876653
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-14 Score=113.62 Aligned_cols=162 Identities=17% Similarity=0.077 Sum_probs=94.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||+|.|++... .. ....+.........+.+ ++ ..+.++||||... +..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~ 71 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKF-DT-QLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FRS 71 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCC-CC-----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CC-CCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchh-----------hhh
Confidence 347999999999999999999986653 11 11111222222233333 44 4788999999543 222
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.....+...|++++|+++++..+... ..++..+...... ....|+++|+||+|+... ....+. ...+
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~--------~~~~ 141 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER--QVSTEE--------AQAW 141 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC--SSCHHH--------HHHH
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccc--ccCHHH--------HHHH
Confidence 33445567899999999873322221 2334444444321 012389999999998733 211111 2222
Q ss_pred HH-hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 173 LQ-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 173 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.. ..+..++ ..|+..+.++.++++.+.+.+.
T Consensus 142 ~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 142 CRDNGDYPYF------ETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp HHHTTCCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhcCCceEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 22 1122222 5677888999999998776553
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-15 Score=122.02 Aligned_cols=161 Identities=15% Similarity=0.176 Sum_probs=94.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||+|.|++... .. ....+.+.......+.+ ++ ..+.++||||......
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~---------- 84 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKF-NP-SFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRT---------- 84 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCC-CC-SSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-Cc-ccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHH----------
Confidence 3457999999999999999999997653 11 11122233333333444 44 5788999999654211
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
.....+..+|++++|+|+++..+... ..++..+....... .++++|+||+|+... ....+. ...+.
T Consensus 85 -~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~--------~~~~~ 151 (213)
T 3cph_A 85 -ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETR--VVTADQ--------GEALA 151 (213)
T ss_dssp -CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCSSC--CSCHHH--------HHHHH
T ss_pred -HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--ccCHHH--------HHHHH
Confidence 11122357899999999873222111 23444454443322 389999999998433 211111 12222
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
...+..++ ..|+..+.++.++++.|...+.
T Consensus 152 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 152 KELGIPFI------ESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp HHHTCCEE------ECBTTTTBSSHHHHHHHHHHHH
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 33333333 4577788899999888776653
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.6e-15 Score=119.98 Aligned_cols=164 Identities=20% Similarity=0.183 Sum_probs=94.1
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
.....+|+|+|..|+|||||+|.|++... ......|+...+. .... .....+.++||||......
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------- 87 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEF----SEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI--------- 87 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCC----CSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCC---------
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCC----CCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHH---------
Confidence 34568999999999999999999997654 1111122222221 2222 1345778999999765321
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.....+...|++++|+|+++.-+... ..++..+..... ....++++|+||+|+......... . ...+
T Consensus 88 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~-~--------~~~~ 155 (201)
T 3oes_A 88 --LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPEREVQAV-E--------GKKL 155 (201)
T ss_dssp --CCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHH-H--------HHHH
T ss_pred --HHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCccccccCHH-H--------HHHH
Confidence 12334567899999999873222111 122222222211 112389999999998744111111 1 1223
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
....+..++ ..|++.+.++.++++.|...+..
T Consensus 156 ~~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 156 AESWGATFM------ESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp HHHHTCEEE------ECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCeEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 333343333 46788899999999988877654
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.9e-15 Score=115.82 Aligned_cols=160 Identities=16% Similarity=0.223 Sum_probs=92.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|.+|+|||||+|.|+|...... ... +.+.......+.+ ++..+.++||||........ ..+.+.....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~-~~~-~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIG-NWP-GVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSS--HHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeecc-CCC-CcceeeeEEEEEE-CCcEEEEEECCCcccCCCcc--hhHHHHHHHH
Confidence 36899999999999999999998653211 111 2233333333444 67789999999987643211 1112222221
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.. .+++++++|+|++ ... ....++..+.. .. .++++|+||+|+... ..+ . .....+....+.
T Consensus 78 ~~-~~~~~~i~v~D~~-~~~-~~~~~~~~~~~---~~--~p~ilv~nK~Dl~~~--~~~----~----~~~~~~~~~~~~ 139 (165)
T 2wji_A 78 IN-EKPDLVVNIVDAT-ALE-RNLYLTLQLME---MG--ANLLLALNKMDLAKS--LGI----E----IDVDKLEKILGV 139 (165)
T ss_dssp HH-HCCSEEEEEEETT-CHH-HHHHHHHHHHH---TT--CCEEEEEECHHHHHH--TTC----C----CCHHHHHHHHTS
T ss_pred hc-CCCCEEEEEecCC-chh-HhHHHHHHHHh---cC--CCEEEEEEchHhccc--cCh----h----hHHHHHHHHhCC
Confidence 11 2579999999987 321 12223333322 12 389999999997532 110 0 012233333343
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.++ ..|++.+.++.++++.+.+.
T Consensus 140 ~~~------~~SA~~~~~v~~l~~~l~~~ 162 (165)
T 2wji_A 140 KVV------PLSAAKKMGIEELKKAISIA 162 (165)
T ss_dssp CEE------ECBGGGTBSHHHHHHHHHHH
T ss_pred CEE------EEEcCCCCCHHHHHHHHHHH
Confidence 333 56888999999999987654
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=118.83 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=92.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC-----------------------------
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------------------- 68 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------------------- 68 (363)
...+|+|+|..|+|||||+|.|++... .. ....+.........+.+ ++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTF-HE-NTNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCC-CS-SCCCCCSCEEEEEEEET-TC-----------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC-CC-CcCccccceeEEEEEEe-cCccccccccccccccccccccccccccccc
Confidence 348999999999999999999997753 11 11111111121222222 22
Q ss_pred ----------cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccc
Q 017924 69 ----------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVF 137 (363)
Q Consensus 69 ----------~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~ 137 (363)
..+.++||||...... ........+|++++|+|+++..+..+ ..++..+....+
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---- 147 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---- 147 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----
T ss_pred cccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----
Confidence 6788999999544221 11122346799999999873322222 233444444333
Q ss_pred cceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 138 ~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.++++|+||+|.... ....++ +..++...+..++ ..|+..+.++.++++.|...+.
T Consensus 148 ~piilv~NK~D~~~~-~~~~~~---------~~~~~~~~~~~~~------~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 148 YIIILVANKIDKNKF-QVDILE---------VQKYAQDNNLLFI------QTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp CEEEEEEECTTCC-C-CSCHHH---------HHHHHHHTTCEEE------EECTTTCTTHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCcccc-cCCHHH---------HHHHHHHcCCcEE------EEecCCCCCHHHHHHHHHHHHH
Confidence 389999999993211 111221 2233343343333 4577788999999998876653
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-15 Score=117.92 Aligned_cols=160 Identities=14% Similarity=0.170 Sum_probs=93.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++... .. ....+.+.......+.+ ++ ..+.++||||.......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~----------- 68 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKF-NP-SFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTI----------- 68 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC-CC--------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CC-CCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhh-----------
Confidence 37999999999999999999997653 11 11112222222333333 33 46789999996542211
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|+++..+... ..++..+....... .|+++|+||+|+... ....+. ...+...
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~--------~~~~~~~ 136 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETR--VVTADQ--------GEALAKE 136 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTC--CSCHHH--------HHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCCcC--ccCHHH--------HHHHHHH
Confidence 1122346899999999873322211 23444444443222 389999999998433 111111 1223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+..++ ..|+..+.++.++++.+.+.+..
T Consensus 137 ~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 137 LGIPFI------ESSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp HTCCEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 333333 46777889999999988776643
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-14 Score=115.15 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=92.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++...... ....+.+.......+.. ++ ..+.++||||... +...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~-----------~~~~ 76 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQER-----------FRSV 76 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC-----------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCC-CcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 47999999999999999999987654111 11111222222222233 43 3778999999543 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|+++..+... ..++..+....... .++++|+||+|+........++ ...+...
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 145 (180)
T 2g6b_A 77 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHERVVKRED---------GEKLAKE 145 (180)
T ss_dssp --CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSCCCSCHHH---------HHHHHHH
T ss_pred HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccCcccccCHHH---------HHHHHHH
Confidence 3344567899999999873322222 23444444443322 3899999999987541111111 1222233
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.+..++ ..|+..+.++.++++.+...+.
T Consensus 146 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 146 YGLPFM------ETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp HTCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 333333 4577888999999998877654
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.7e-15 Score=127.83 Aligned_cols=127 Identities=11% Similarity=0.094 Sum_probs=67.2
Q ss_pred CCcEEEEEeCCCCCCCCCC--hHHHHHHHHHHHhccCCCccEEEEEeecC-CCCCHHH-HHHHHHHHHHhccccccceEE
Q 017924 67 DGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRFSQEE-ETAVHRLPNLFGKNVFDYMIV 142 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~~~~-~~~~~~~-~~~l~~~~~~~~~~~~~~~i~ 142 (363)
.+..++|+||||+...... ...+...+......+...+|++++|++.. ..+...+ ...+..+.. ...++++
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~-----~~~~~i~ 203 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-----EGKRTIG 203 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-----SCSSEEE
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC-----CCCcEEE
Confidence 3467899999998752110 01122334444444455789999999873 3343233 233333321 1238999
Q ss_pred EEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccc---hhHHHHHHHHHHHHHHH
Q 017924 143 VFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKG---TEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 143 v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~ 210 (363)
|+||+|........+ +++.. .+..++..++.+. ..++.. +.++.++++.+...+..
T Consensus 204 v~NK~Dl~~~~~~~~-~~~~~--------~~~~~~~~~~~v~---~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 204 VITKLDLMDKGTDAM-EVLTG--------RVIPLTLGFIGVI---NRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp EEECTTSSCSSCCCH-HHHTT--------SSSCCTTCEEECC---CCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred EEcCcccCCcchHHH-HHHhC--------CCccCCCCeEEEe---cCChhhhccCCCHHHHHHHHHHHHhC
Confidence 999999986521112 22221 0001112333322 334444 67889999988888765
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=118.38 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=96.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++.... . ....+.+.......+.+ ++ ..+.++||||...... .
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~-~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~-----------~ 73 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYT-N-DYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRT-----------I 73 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-T-TCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTC-----------C
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-C-CCCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHH-----------H
Confidence 379999999999999999999976531 1 11122222233333334 43 3788999999654321 1
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|+++..+... ..++..+....... .++++|+||+|+........+ . ...+...
T Consensus 74 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~ 142 (206)
T 2bcg_Y 74 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDKRVVEYD-V--------AKEFADA 142 (206)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHH-H--------HHHHHHH
T ss_pred HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH-H--------HHHHHHH
Confidence 2234567899999999873322222 22344444433222 389999999998753111111 1 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+..++ ..|+..+.++.++++.|...+..
T Consensus 143 ~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 143 NKMPFL------ETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp TTCCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 333333 45777889999999988776643
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-14 Score=115.55 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=95.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++... .. ....+.+.......+.. ++ ..+.++||||... +...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~~ 75 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKF-KD-DSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQER-----------FRSV 75 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CT-TCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CC-CCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 47999999999999999999997653 11 11222232333333333 44 4788999999543 2223
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+... ..++..+....... .|+++|+||+|+........++ ...+...
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 144 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDADREVTFLE---------ASRFAQE 144 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 3445678899999999873222111 22333444433322 3899999999986431011111 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|+..+.++.++++.+...+
T Consensus 145 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 145 NELMFL------ETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp TTCEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEE------EecCCCCCCHHHHHHHHHHHH
Confidence 333333 457778889999998876655
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=116.03 Aligned_cols=164 Identities=16% Similarity=0.236 Sum_probs=98.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|.+|+|||||+|.|+|...+.. .. .+.+.......+.+ ++..+.++||||........ ..+.+...+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~-~~-~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~~ 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIG-NW-PGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDY 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEE-EC-TTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSS--HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc-CC-CCeeccceEEEEEe-CCcEEEEEECCCcCcccccc--HHHHHHHHH
Confidence 347999999999999999999998653222 22 22333444444444 67889999999987643211 111222221
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
... ..++++++|+|.+ .+ .. ...++..+.... .++++|+||+|.... ..+. .....+...++
T Consensus 81 ~~~-~~~~~~i~v~d~~-~~-~~---~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~--------~~~~~~~~~~~ 142 (188)
T 2wjg_A 81 IIN-EKPDLVVNIVDAT-AL-ER---NLYLTLQLMEMG--ANLLLALNKMDLAKS--LGIE--------IDVDKLEKILG 142 (188)
T ss_dssp HHH-HCCSEEEEEEEGG-GH-HH---HHHHHHHHHTTT--CCEEEEEECHHHHHH--TTCC--------CCHHHHHHHHT
T ss_pred Hhc-cCCCEEEEEecch-hH-HH---HHHHHHHHHhcC--CCEEEEEEhhhcccc--ccch--------HHHHHHHHHhC
Confidence 111 2468999999986 32 11 122222222222 389999999997532 1110 11334444444
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
..++ ..|++.+.++.++++.+...+..
T Consensus 143 ~~~~------~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 143 VKVV------PLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp SCEE------ECBGGGTBSHHHHHHHHHHHHTT
T ss_pred CCeE------EEEecCCCCHHHHHHHHHHHHHh
Confidence 4333 46778888999999998887754
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8.5e-15 Score=115.10 Aligned_cols=159 Identities=22% Similarity=0.197 Sum_probs=90.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
+..+|+|+|..|+|||||+|.|++... . .....++.... ..+.. ++ ..+.++||||.... ..+.
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~---~~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~--------~~~~ 69 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEF-V---EDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY--------AAIR 69 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-C---SCCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---C--------HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcc-C---CCCCCCcceEEEEEEEE-CCEEEEEEEEECCCcchh--------HHHH
Confidence 457999999999999999999997653 1 11111221222 22233 33 36889999996542 1111
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
. ..+...|++++|+|+++..+-. ...++..+...... ...|+++|+||+|+........++ ...+.
T Consensus 70 ~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 136 (168)
T 1u8z_A 70 D---NYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE---------AKNRA 136 (168)
T ss_dssp H---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred H---HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCccCHHH---------HHHHH
Confidence 1 1223579999999987332211 22334444444321 123899999999986431111111 22233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+..++ ..|+..+.++.++++.+.+.+
T Consensus 137 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 137 DQWNVNYV------ETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp HHHTCEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCeEE------EeCCCCCCCHHHHHHHHHHHH
Confidence 33333333 457778889999999887655
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.1e-15 Score=117.92 Aligned_cols=160 Identities=19% Similarity=0.136 Sum_probs=92.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..+|+|+|..|+|||||+|.|++.... . ....+...........+. ....+.++||||.... ....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-----------~~~~ 72 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFD-P-NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF-----------RALA 72 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC-T-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------GGGT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-C-CCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh-----------hccc
Confidence 479999999999999999999977531 1 111111212222223331 1357889999997431 1111
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.......|++++|+|+++..+... ..++..+....... .++++|.||+|+.... ....+. ...+....
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~~-~v~~~~--------~~~~~~~~ 141 (170)
T 1z0j_A 73 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDVR-EVMERD--------AKDYADSI 141 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGGC-CSCHHH--------HHHHHHHT
T ss_pred HhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCcccccc-ccCHHH--------HHHHHHHc
Confidence 223356799999999873332222 23444444432222 3788999999987531 111111 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ ..|+..+.++.++++.|.+.+
T Consensus 142 ~~~~~------~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 142 HAIFV------ETSAKNAININELFIEISRRI 167 (170)
T ss_dssp TCEEE------ECBTTTTBSHHHHHHHHHHHC
T ss_pred CCEEE------EEeCCCCcCHHHHHHHHHHHH
Confidence 43333 457778889999998876543
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=6.8e-15 Score=119.65 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=93.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|+|||||+|.|++..... ....+.........+.... ...+.++||||... +.....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~~~ 75 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTP--AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER-----------YRTITT 75 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCS--CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCccceeEEEEEEEECCeEEEEEEEECCCchh-----------hcchHH
Confidence 799999999999999999999765311 1111222222222333311 34788999999643 122233
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+..+|++++|+|+++..+... ..++..+....... .++++|+||+|+........+ . ...+....+
T Consensus 76 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~~~ 144 (203)
T 1zbd_A 76 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDERVVSSE-R--------GRQLADHLG 144 (203)
T ss_dssp TTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSS--CEEEEEEECTTCTTSCCSCHH-H--------HHHHHHHHT
T ss_pred HhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCcccccCHH-H--------HHHHHHHCC
Confidence 44567899999999873322121 22333443332222 389999999998753101111 1 222333334
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..++ ..|++.+.++.++++.|...+
T Consensus 145 ~~~~------~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 145 FEFF------EASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp CEEE------ECBTTTTBSSHHHHHHHHHHH
T ss_pred CeEE------EEECCCCCCHHHHHHHHHHHH
Confidence 3333 457778889999888877655
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-14 Score=116.44 Aligned_cols=165 Identities=17% Similarity=0.108 Sum_probs=92.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|+|..|+|||||++.|++... .. ....|+...+. .+.. ++. .+.++||||......
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------- 83 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PT---EYIPTAFDNFSAVVSV-DGRPVRLQLCDTAGQDEFDK--------- 83 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEE-TTEEEEEEEEECCCSTTCSS---------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CC---CCCCcccceeEEEEEE-CCEEEEEEEEECCCCHHHHH---------
Confidence 4458999999999999999999997652 22 11122222222 2233 443 567999999765321
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc----cCC-C
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG----HEC-P 166 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~----~~~-~ 166 (363)
.....+..+|++++|+|+++..+..+. .++..+..... . .++++|.||+|+... ......+. ... .
T Consensus 84 --~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~ 156 (201)
T 2q3h_A 84 --LRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-K--APIILVGTQSDLRED--VKVLIELDKCKEKPVPE 156 (201)
T ss_dssp --SGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--SCEEEEEECGGGGGC--HHHHHHHHTTTCCCCCH
T ss_pred --HhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhc--hhhhhhhcccccccCCH
Confidence 122345678999999998733222222 24444444332 2 389999999998754 11111110 000 0
Q ss_pred chHHHHHHhcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 167 KPLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 167 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.....+....+. .++ ..|++.+.++.++++.+...+
T Consensus 157 ~~~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 157 EAAKLLAEEIKAASYI------ECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp HHHHHHHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEE------EEecCCCCCHHHHHHHHHHHH
Confidence 112233333333 232 567888899999998877655
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=115.42 Aligned_cols=165 Identities=16% Similarity=0.084 Sum_probs=90.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||+|.|++.... . ....+.+.+.....+.+. ....+.++||||... +.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~ 72 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYS-Q-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQ 72 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC-T-TC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCC-c-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH-----------hh
Confidence 34579999999999999999999876531 1 111112222222333331 135788999999543 22
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~ 171 (363)
......+...|++++|+|+++..+... ..++..+...... ....|+++|+||+|+....+....+. ...
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~--------~~~ 144 (182)
T 1ky3_A 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS--------AQE 144 (182)
T ss_dssp ----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHH--------HHH
T ss_pred hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHH--------HHH
Confidence 233445678899999999873322121 2334444443320 12238999999999864311111111 222
Q ss_pred HHHhc-CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 172 ILQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+.... +..++ ..|+..+.++.++++.|...+
T Consensus 145 ~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 145 LAKSLGDIPLF------LTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp HHHHTTSCCEE------EEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHhcCCCeEE------EEecCCCCCHHHHHHHHHHHH
Confidence 33212 22232 467788899999999877654
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-15 Score=118.36 Aligned_cols=161 Identities=22% Similarity=0.186 Sum_probs=93.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
...+|+|+|..|+|||||+|.|++..... ....+.........+.+.+ ...+.++||||.... ...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~ 77 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVE--FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-----------HSL 77 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTT--TSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG-----------GGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC--cCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh-----------hhh
Confidence 34799999999999999999999765411 1111222222222233311 347889999995431 111
Q ss_pred HhccCCCccEEEEEeecCCCCCH-HHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+- ....++..+....... .++++|+||+|+........++ ...+...
T Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~~~~~~~~---------~~~~~~~ 146 (181)
T 2efe_B 78 APMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDARKVTAED---------AQTYAQE 146 (181)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHH---------HHHHHHH
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccccCCHHH---------HHHHHHH
Confidence 12233568999999998733321 2233444444433222 3799999999986431111111 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|+..+.++.++++.|...+
T Consensus 147 ~~~~~~------~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 147 NGLFFM------ETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp TTCEEE------ECCSSSCTTHHHHHHHHHHTC
T ss_pred cCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 333333 457778899999998876644
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=116.98 Aligned_cols=163 Identities=12% Similarity=0.095 Sum_probs=91.0
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
......+|+|+|..|+|||||++.|++.......+ |.......+.. .+..+.++||||......
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~---------- 88 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY-KNICFTVWDVGGQDKIRP---------- 88 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEE-----ETTEEEEEEEE-TTEEEEEEECC-----CT----------
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccccCC-----cCceeEEEEEE-CCEEEEEEECCCCHhHHH----------
Confidence 34556899999999999999999998665311111 22222233344 678899999999754221
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.....+..+|++++|+|+++..+-... ..++...... ....|+++|+||+|+... ...+++... +.
T Consensus 89 -~~~~~~~~~d~iilv~D~~~~~s~~~~--~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~-- 156 (192)
T 2b6h_A 89 -LWRHYFQNTQGLIFVVDSNDRERVQES--ADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDK-----LG-- 156 (192)
T ss_dssp -THHHHHHTCCEEEEEEETTCGGGHHHH--HHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--
T ss_pred -HHHHHhccCCEEEEEEECCCHHHHHHH--HHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHH-----hC--
Confidence 111122467999999999744322221 1223222211 012389999999998754 222222221 10
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
........+. ....|+..+.++.++++.|.+.+
T Consensus 157 ~~~~~~~~~~---~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 157 LQHLRSRTWY---VQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp GGGCSSCCEE---EEECBTTTTBTHHHHHHHHHHHT
T ss_pred cccccCCceE---EEECcCCCcCCHHHHHHHHHHHH
Confidence 0001111111 13568888999999999876654
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=116.21 Aligned_cols=162 Identities=16% Similarity=0.125 Sum_probs=93.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|.+|+|||||+|.|++.......++.+ .....+.+ ++..+.++||||..... ..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~-----~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~ 78 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG-----FNVETLSY-KNLKLNVWDLGGQTSIR-----------PY 78 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTT-----CCEEEEEE-TTEEEEEEEEC----CC-----------TT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCc-----cceEEEEE-CCEEEEEEECCCCHhHH-----------HH
Confidence 345899999999999999999999655322222222 12223334 57888999999976432 12
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+..+|++++|+|+++..+-... ..++...... ....|+++|+||+|+... ...++.... +. ..
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~-----~~--~~ 147 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMSTA--SKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKE-----LN--LV 147 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHHH--HHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHH-----TT--TT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHH--HHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHH-----hC--cc
Confidence 23345688999999998744333322 2223333211 122389999999998754 222222111 00 00
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
......+ .....|+..+.++.++++.+.+.+.
T Consensus 148 ~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 148 ELKDRSW---SIVASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp TCCSSCE---EEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred cccCCce---EEEEccCCCCcCHHHHHHHHHHHHH
Confidence 0011111 1125688889999999998877654
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-15 Score=116.81 Aligned_cols=159 Identities=18% Similarity=0.122 Sum_probs=91.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++.... . ....+.........+.. ++ ..+.++||||..... ..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~~ 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFA-E-NKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFA-----------SL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-T-TCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------GG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-C-CCCCccceeEEEEEEEE-CCEEEEEEEEECCCChhhh-----------hh
Confidence 379999999999999999999976531 1 11112222222233333 33 478899999954311 11
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcc--hhhHHHHhccCCCchHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~--~~~l~~~~~~~~~~~~~~~~ 173 (363)
....+...|++++|+|+++..+..+ ..++..+....... .++++|+||+|+.... .....+. ...+.
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~v~~~~--------~~~~~ 138 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDXLQEGGERKVAREE--------GEKLA 138 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGSSCCCCSCHHH--------HHHHH
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCccccccccCCCHHH--------HHHHH
Confidence 1223357799999999873322222 22344444433223 3889999999986431 0111111 12233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
...+..++ ..|+..+.++.++++.+.+.
T Consensus 139 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1ek0_A 139 EEKGLLFF------ETSAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp HHHTCEEE------ECCTTTCTTHHHHHHHHHTT
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHH
Confidence 33333333 45777888999999877543
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-14 Score=116.96 Aligned_cols=167 Identities=17% Similarity=0.144 Sum_probs=96.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||++.|++... .. ....+..... ...+.. ++ ..+.++||||.... .
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~-~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~ 87 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQF-PE-VYVPTVFENY-IADIEV-DGKQVELALWDTAGQEDY-----------D 87 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSC-CS-SCCCSSCCCC-EEEEEE-TTEEEEEEEECCCCSGGG-----------T
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcC-Cc-ccCCcccceE-EEEEEE-CCEEEEEEEEECCCchhH-----------H
Confidence 4457999999999999999999997653 11 1111111111 112233 33 36789999995432 1
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc----CCC-c
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-K 167 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~----~~~-~ 167 (363)
......+...|++++|+|+++..+-.. ..++..+..... . .++++|+||+|+... ....+.+.. ... +
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 162 (201)
T 2gco_A 88 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRQD--EHTRRELAKMKQEPVRSE 162 (201)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGTTC--HHHHHHHHTTTCCCCCHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEecHHhhcC--ccchhhhcccccCcCCHH
Confidence 222334568899999999873222222 233444444322 2 389999999999865 222222211 000 1
Q ss_pred hHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+....+...++ ..|+..+.++.++++.|.+.+
T Consensus 163 ~~~~~~~~~~~~~~~-----~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 163 EGRDMANRISAFGYL-----ECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHHHHHTTCSEEE-----ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEE-----EeeCCCCCCHHHHHHHHHHHH
Confidence 123333443431222 567888899999999877654
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-14 Score=116.99 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=94.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||++.|++... .. ....+.+.+.....+.+ ++ ..+.++||||... +...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~~ 91 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLF-PP-GQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRSI 91 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CT-TCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CC-CCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHH
Confidence 37999999999999999999986643 11 11112222333333334 44 4688999999532 2233
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+-.. ..++..+....... .++++|.||+|+........++ ...+...
T Consensus 92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~~---------~~~~~~~ 160 (201)
T 2ew1_A 92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAERREVSQQR---------AEEFSEA 160 (201)
T ss_dssp HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCSSCHHH---------HHHHHHH
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHHH---------HHHHHHH
Confidence 4455678899999999873322111 23444444443222 3889999999986431011111 1122223
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|++.+.++.++++.+...+
T Consensus 161 ~~~~~~------~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 161 QDMYYL------ETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp HTCCEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 333333 467888899999998876655
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-14 Score=117.50 Aligned_cols=160 Identities=22% Similarity=0.197 Sum_probs=93.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|+|..|+|||||+|.|++... .. ....|+... ...+.+ ++ ..+.++||||..... .+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~--------~~ 78 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEF-VE---DYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA--------AI 78 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC-CT---TCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH--------HH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCC-CC---CCCCccceEEEEEEEE-CCEEEEEEEEcCCChhhhH--------HH
Confidence 3457999999999999999999997653 11 111122122 222333 44 368899999976521 11
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.. ..+...|++++|+|+++.-+... ..++..+..... ....|+++|+||+|+........++ ...+
T Consensus 79 ~~---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~ 145 (206)
T 2bov_A 79 RD---NYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKNR 145 (206)
T ss_dssp HH---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHH---------HHHH
T ss_pred HH---HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHH---------HHHH
Confidence 11 12235699999999873222111 233444444332 1123899999999987531111221 2223
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+..++ ..|+..+.++.++++.|...+
T Consensus 146 ~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 146 AEQWNVNYV------ETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp HHHHTCEEE------EECTTTCTTHHHHHHHHHHHH
T ss_pred HHHhCCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 333343333 457778889999998877665
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-14 Score=115.92 Aligned_cols=161 Identities=14% Similarity=0.088 Sum_probs=93.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeC----------CcEEEEEeCCCCCCCCCChH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKD----------GQVVNVIDTPGLFDLSAGSE 87 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~----------~~~~~l~DtpG~~~~~~~~~ 87 (363)
..+|+|+|..|+|||||+|.|++... .. ....+...... ...+.... ...+.++||||...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------ 82 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKF-NS-KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER------ 82 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CC-SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-Cc-CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH------
Confidence 47999999999999999999997553 11 11111111111 12222211 24788999999643
Q ss_pred HHHHHHHHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCC
Q 017924 88 FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (363)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~ 166 (363)
+.......+..+|++++|+|+++..+... ..++..+..... ....++++|+||+|+........+ .
T Consensus 83 -----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~-~------ 149 (195)
T 3bc1_A 83 -----FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAVKEE-E------ 149 (195)
T ss_dssp -----GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCSCHH-H------
T ss_pred -----HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHH-H------
Confidence 22223344567899999999873322222 233444443322 012389999999998643101111 1
Q ss_pred chHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 167 KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+....+..++ ..|+..+.++.++++.|...+
T Consensus 150 --~~~~~~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 150 --ARELAEKYGIPYF------ETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp --HHHHHHHHTCCEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred --HHHHHHHcCCCEE------EEECCCCCCHHHHHHHHHHHH
Confidence 2223333333333 457778889999998877665
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.4e-15 Score=118.11 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=93.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||+|.|++.... . ....+.........+.. ++ ..+.++||||..... ....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~-~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-------~~~~- 82 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFM-A-DCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFR-------AVTR- 82 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-S-SCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTC-------HHHH-
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-C-CCCCccceEEEEEEEEE-CCeEEEEEEEECCCChHhh-------hhHH-
Confidence 3479999999999999999999976541 1 11122222222222333 33 467899999954321 1111
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
..+...|++++|+|+++..+... ..++..+....... .++++|+||+|+........++ ...+..
T Consensus 83 ---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 148 (179)
T 1z0f_A 83 ---SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRDVTYEE---------AKQFAE 148 (179)
T ss_dssp ---HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred ---HHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHH---------HHHHHH
Confidence 22346799999999873322222 23344444443222 3899999999986431111111 223333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+..++ ..|+..+.++.++++.+.+.+
T Consensus 149 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 149 ENGLLFL------EASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp HTTCEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 3343333 457778899999998876654
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-15 Score=120.33 Aligned_cols=161 Identities=17% Similarity=0.108 Sum_probs=93.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|+|||||+|.|++........ .+.+.......+... ....+.++||||.. .+.....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~~~ 90 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFV--STVGIDFKVKTVYRHEKRVKLQIWDTAGQE-----------RYRTITT 90 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCCCEE--EEETTTEEEEEEEETTTTEEEEEECHHHHH-----------HCHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcCCCCcccC--CCeeeEEEEEEEEECCEEEEEEEEeCCChH-----------HHHHHHH
Confidence 799999999999999999999765311100 111111222222221 35578999999932 2222333
Q ss_pred ccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+..+|++++|+|+++.-+.. ...++..+....... .++++|+||+|+........+ . ...+....+
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~~~ 159 (191)
T 3dz8_A 91 AYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDMEEERVVPTE-K--------GQLLAEQLG 159 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH-H--------HHHHHHHHT
T ss_pred HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH-H--------HHHHHHHcC
Confidence 3445789999999987322211 123444444433222 389999999998643111111 1 222333334
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
..++ ..|++.+.++.++++.+.+.+..
T Consensus 160 ~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 160 FDFF------EASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp CEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 3333 46778889999999988776543
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=113.78 Aligned_cols=164 Identities=21% Similarity=0.179 Sum_probs=88.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||+|.|++..........+ .+ .....+.+ ++ ..+.++||||..... ...+.
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~-~~--~~~~~~~~-~~~~~~~~~~D~~g~~~~~------~~~~~ 71 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG-ED--VYERTLTV-DGEDTTLVVVDTWEAEKLD------KSWSQ 71 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSS-SS--EEEEEEEE-TTEEEEEEEECCC-------------CHHH
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccc-cc--eeEEEEEE-CCEEEEEEEEecCCCCccc------hhhhH
Confidence 345799999999999999999999775421111111 12 12222333 33 367899999965420 01111
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
...+...|++++|+|+++..+-.. ..++..+..... ....|+++|.||+|+........++ ...+.
T Consensus 72 ---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~ 138 (175)
T 2nzj_A 72 ---ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEE---------GRACA 138 (175)
T ss_dssp ---HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHH
T ss_pred ---HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHH---------HHHHH
Confidence 223456799999999873322222 123333333211 1123899999999987531111111 11222
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
...+..++ ..|++.+.++.++++.|.+.+.
T Consensus 139 ~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 139 VVFDCKFI------ETSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp HHHTSEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EEecCCCCCHHHHHHHHHHHHH
Confidence 22232333 5678888999999998776553
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-15 Score=121.92 Aligned_cols=167 Identities=16% Similarity=0.098 Sum_probs=89.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||+|.|++... .. ....+.........+.+ ++ ..+.++||||.... .....
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-------~~~~~ 95 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEF-RE-NISATLGVDFQMKTLIV-DGERTVLQLWDTAGQERF-------RSIAK 95 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCC-C-----------CEEEEEEE-TTEEEEEEEEECTTCTTC-------HHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCC-Cc-cCCCCccceeEEEEEEE-CCEEEEEEEEECCCCcch-------hhhHH
Confidence 3457999999999999999999987653 11 11111111122222333 33 46889999996542 11111
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
. .+..+|++++|+|+++..+... ..++..+....... .|+++|+||+|+... ...+. ...........+.
T Consensus 96 ~----~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~--~~~~~-~~~v~~~~~~~~~ 166 (199)
T 2p5s_A 96 S----YFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIRDT--AATEG-QKCVPGHFGEKLA 166 (199)
T ss_dssp H----HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHH--HHHTT-CCCCCHHHHHHHH
T ss_pred H----HHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccc--ccccc-ccccCHHHHHHHH
Confidence 1 2235699999999873322222 23344444433222 389999999998632 10000 0000000122233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+..++ ..|++.+.++.++++.|.+.+
T Consensus 167 ~~~~~~~~------~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 167 MTYGALFC------ETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp HHHTCEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCeEE------EeeCCCCCCHHHHHHHHHHHH
Confidence 33343333 467788899999998877654
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=116.04 Aligned_cols=158 Identities=16% Similarity=0.074 Sum_probs=92.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|..|+|||||+|.|++.......++.+ . ....+.+ ++..+.++||||.... ....
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~-~----~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~ 82 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG-S----NVEEIVI-NNTRFLMWDIGGQESL-----------RSSW 82 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSS-S----SCEEEEE-TTEEEEEEEESSSGGG-----------TCGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCc-e----eeEEEEE-CCEEEEEEECCCCHhH-----------HHHH
Confidence 45799999999999999999999765411112222 1 1223334 6788999999997542 1122
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++|+|+++..+-... ..+..+..... ....++++|+||+|+... ...+++... +. ....
T Consensus 83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~--~~~~ 152 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQF-----LK--LTSI 152 (181)
T ss_dssp GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcccC--CCHHHHHHH-----hC--cccc
Confidence 3445678999999999855443332 22333322110 122389999999998754 222222111 00 0000
Q ss_pred C-CceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 177 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
. ..+. ....|++.+.++.++++.|.+
T Consensus 153 ~~~~~~----~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 153 KDHQWH----IQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp CSSCEE----EEECBTTTTBTHHHHHHHHHT
T ss_pred cCCceE----EEEccCCCCcCHHHHHHHHHh
Confidence 1 1111 125678888999999887653
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=115.88 Aligned_cols=160 Identities=22% Similarity=0.194 Sum_probs=93.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||+|.|++... . .....++.... ..+.. ++ ..+.++||||.... ..+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~---~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~--------~~~~ 83 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-V---EDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY--------AAIR 83 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-C---CSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC--------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-C---CcCCCccceEEEEEEEE-CCEEEEEEEEECCCCccc--------HHHH
Confidence 457999999999999999999997653 1 11111222222 22233 43 36889999996642 1111
Q ss_pred HHHhccCCCccEEEEEeecCCCCCH-HHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
.. .+...|++++|+|+++..+. ....++..+...... ...|+++|+||+|+........++ ...+.
T Consensus 84 ~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 150 (187)
T 2a9k_A 84 DN---YFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE---------AKNRA 150 (187)
T ss_dssp HH---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred HH---HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCHHH---------HHHHH
Confidence 11 22356999999998733221 122334444444321 123899999999986431111111 22233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
...+..++ ..|+..+.++.++++.|.+.+.
T Consensus 151 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 151 EQWNVNYV------ETSAKTRANVDKVFFDLMREIR 180 (187)
T ss_dssp HHTTCEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EeCCCCCCCHHHHHHHHHHHHH
Confidence 33343333 4577788899999998877653
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-14 Score=130.68 Aligned_cols=165 Identities=18% Similarity=0.230 Sum_probs=106.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccc-----cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFK-----ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
..+|+++|+.|+|||||+++|+|..... ......+.|+...+..+.+ ++..++++||||.. .+
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~-----------~~ 86 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA-----------DL 86 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH-----------HH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChH-----------HH
Confidence 4799999999999999999999876100 0011223455555555555 67899999999942 33
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
...+......+|++++|+|+++.........+..+.. .+- +.++++||+|+... ..++..... +..++
T Consensus 87 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~i----p~IvviNK~Dl~~~--~~~~~~~~~-----l~~~l 154 (482)
T 1wb1_A 87 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FNI----PIIVVITKSDNAGT--EEIKRTEMI-----MKSIL 154 (482)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CBCEEEECTTSSCH--HHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cCC----CEEEEEECCCcccc--hhHHHHHHH-----HHHHH
Confidence 4444445567899999999986666666666665544 332 67999999999864 445544444 55555
Q ss_pred Hhc-CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 174 QLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 174 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
... +... ......|+..+.++.+|++.|...+..
T Consensus 155 ~~~~~~~~---~~ii~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 155 QSTHNLKN---SSIIPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp HHSSSGGG---CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhhccccc---ceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence 443 1100 012256788889999999999887653
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=117.87 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=92.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE-EEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||+|.|++... .. . ...+....... ... + ...+.++||||..... .+.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~-~--~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~--------~~~ 73 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTF-RD-T--YIPTIEDTYRQVISC-DKSVCTLQITDTTGSHQFP--------AMQ 73 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCC-CC-T--TSCCCCEEEEEEEEE-TTEEEEEEEEECCGGGSCH--------HHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCC-CC-c--ccCccccceeEEEEE-CCEEEEEEEEeCCChHHhH--------HHH
Confidence 458999999999999999999997543 11 1 11121111111 222 3 2467899999965421 111
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
.. .+...|++++|+|+++..+... ..++..+....+.....|+++|+||+|+... ....+. ...+.
T Consensus 74 ~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~~~ 140 (199)
T 2gf0_A 74 RL---SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR--EVDTRE--------AQAVA 140 (199)
T ss_dssp HH---HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC--SSCHHH--------HHHHH
T ss_pred HH---hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc--ccCHHH--------HHHHH
Confidence 11 2234699999999873222121 2234444444322122389999999998753 211111 12222
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
...+..++ ..|+..+.++.++++.|...+..
T Consensus 141 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 141 QEWKCAFM------ETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp HHHTCEEE------ECBTTTTBSHHHHHHHHHHHCSS
T ss_pred HHhCCeEE------EEecCCCCCHHHHHHHHHHHHhh
Confidence 33333333 46778889999999988776543
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=115.95 Aligned_cols=169 Identities=14% Similarity=0.110 Sum_probs=91.8
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe--eCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
.....+|+|+|..|+|||||++.|++... ...+.+... ........+ .....+.++||+|........+..
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~---- 89 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMS--PNETLFLES-TNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY---- 89 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCC--GGGGGGCCC-CCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH----
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCC--Ccceeeecc-ccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc----
Confidence 34568999999999999999999988643 112111111 111111111 134678899999976532111000
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcch--hhHHHHhccCCCchHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE--KTLEDFLGHECPKPLKE 171 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~--~~l~~~~~~~~~~~~~~ 171 (363)
...+.++|++++|+|+++++......+..++..........++++|.||+|+...+. .....+... ....
T Consensus 90 ----~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~----~~~~ 161 (196)
T 3llu_A 90 ----EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQR----ANDD 161 (196)
T ss_dssp ----HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHH----HHHH
T ss_pred ----ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHH----HHHH
Confidence 112236799999999985533333444455554421111238999999999876410 001111111 0122
Q ss_pred HHH----hcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 172 ILQ----LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 172 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
+.. ..+..+ ..+|++. .++.++++.+.+
T Consensus 162 ~~~~~~~~~~~~~------~e~Sa~~-~~v~~~f~~l~~ 193 (196)
T 3llu_A 162 LADAGLEKLHLSF------YLTSIYD-HSIFEAFSKVVQ 193 (196)
T ss_dssp HHHTTCTTSCEEE------EEECTTS-THHHHHHHHHHH
T ss_pred HHHhhhhcCCcce------EEEEech-hhHHHHHHHHHH
Confidence 222 112122 2567888 899998887654
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=115.54 Aligned_cols=163 Identities=14% Similarity=0.108 Sum_probs=97.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|..|+|||||+|.|++.......+ |.......+.+ ++..+.++||||...... .
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~-----------~ 82 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVP-----TVGVNLETLQY-KNISFEVWDLGGQTGVRP-----------Y 82 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECS-----STTCCEEEEEE-TTEEEEEEEECCSSSSCC-----------C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCC-----CCceEEEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence 345899999999999999999998665321112 22222233344 678899999999765321 1
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+..+|++++|+|+++.-+-... ..++...... ....|+++|+||+|+... ...+++... +. ..
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~ 151 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVA--KHELYALLDEDELRKSLLLIFANKQDLPDA--ASEAEIAEQ-----LG--VS 151 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHH--HHHHHHHHTCSTTTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHH--HHHHHHHHhhhhcCCCeEEEEEECCCCcCC--CCHHHHHHH-----hC--hh
Confidence 22345688999999999844333222 1222222221 012389999999998754 222222221 00 00
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
......+ .....|+..+.++.++++.+.+.+..
T Consensus 152 ~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 152 SIMNRTW---TIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp GCCSSCE---EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hccCCce---EEEEccCCCccCHHHHHHHHHHHHHh
Confidence 1111111 11256788889999999988877654
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=112.45 Aligned_cols=156 Identities=19% Similarity=0.188 Sum_probs=90.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||+|.|++... . .....+.... ...+.. ++ ..+.++||||..... .+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~-~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~--------~~~~~ 70 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF-V---DECDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS--------AMRDQ 70 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-C---SCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCC--------HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-c---cccCCccceEEEEEEEE-CCEEEEEEEEECCCchhhh--------HHHHH
Confidence 6899999999999999999987653 1 1111122122 222233 33 357899999976531 11111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.....|++++|+++++..+... ..++..+...... ...|+++|+||+|+... ....+. ...+...
T Consensus 71 ---~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~--~~~~~~--------~~~~~~~ 136 (166)
T 2ce2_X 71 ---YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAAR--TVESRQ--------AQDLARS 136 (166)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCC--CSCHHH--------HHHHHHH
T ss_pred ---hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhc--ccCHHH--------HHHHHHH
Confidence 1224689999999873322122 2334444443321 12389999999998753 211111 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|+..+.++.++++.+.+.+
T Consensus 137 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 137 YGIPYI------ETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp HTCCEE------EECTTTCTTHHHHHHHHHHHH
T ss_pred cCCeEE------EecCCCCCCHHHHHHHHHHHH
Confidence 333333 457778889999999887665
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=117.42 Aligned_cols=163 Identities=15% Similarity=0.059 Sum_probs=94.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
...+|+|+|..|+|||||+|.|++.... . ....+.+.+.....+...+ ...+.++||||..... ..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~~ 73 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS-N-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQ-----------SL 73 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-S-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGS-----------CS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-C-CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH-----------Hh
Confidence 4579999999999999999999976531 1 1222222333333333311 2478899999964321 11
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
....+...|++++|+|+++..+... ..++..+...... ....|+++|+||+|+... ....+. ...+.
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~~~ 143 (207)
T 1vg8_A 74 GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKR--------AQAWC 143 (207)
T ss_dssp CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHH--------HHHHH
T ss_pred HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc--ccCHHH--------HHHHH
Confidence 2234467899999999873322211 2233444443321 012389999999998743 211111 12222
Q ss_pred H-hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 174 Q-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 174 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
. ..+..++ ..|+..+.++.++++.|.+.+.
T Consensus 144 ~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 144 YSKNNIPYF------ETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp HHTTSCCEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HhcCCceEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2 1122222 5678888999999998776653
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-14 Score=114.18 Aligned_cols=161 Identities=17% Similarity=0.156 Sum_probs=93.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|.+|+|||||++.|++.......++.+ .....+.+ ++..+.++||+|.... ...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g-----~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~ 76 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG-----FNIKSVQS-QGFKLNVWDIGGQRKI-----------RPY 76 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT-----EEEEEEEE-TTEEEEEEECSSCGGG-----------HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC-----eEEEEEEE-CCEEEEEEECCCCHHH-----------HHH
Confidence 456899999999999999999999774311112222 12223344 5778899999996431 112
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+..+|++++|+|+++.-+-... ..++...+.. ....|+++|.||+|+... ...++.... +. +.
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~~--~~ 145 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEET--GQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIAEG-----LN--LH 145 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHHH--HHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHH--HHHHHHHHhChhhcCCCEEEEEECcCcccC--CCHHHHHHH-----hC--ch
Confidence 22334578999999998743332221 1222222211 112389999999998754 222222111 00 00
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
......+. ...+|+..+.++.++++.+...+
T Consensus 146 ~~~~~~~~---~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 146 TIRDRVWQ---IQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp GCCSSCEE---EEECCTTTCTTHHHHHHHHHHTC
T ss_pred hccCCceE---EEEccCCCCCCHHHHHHHHHHHH
Confidence 01111111 13568888999999999876544
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-13 Score=121.55 Aligned_cols=166 Identities=16% Similarity=0.102 Sum_probs=102.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH-HHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~ 96 (363)
...+|+|+|.+|+|||||+|.|+|.... ..... ..|....+..+.. .+..+.++||||+.+...... .+... .
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~-~~~~~-~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~---~ 239 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPE-IASYP-FTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIEKQ---A 239 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCE-EECCT-TCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHHHH---H
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCC-CeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHHHH---H
Confidence 4579999999999999999999987631 11111 2233344444444 567889999999866432211 11111 1
Q ss_pred HhccCCCccEEEEEeecCCCC--CHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRF--SQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~--~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
+.......|++++|+|+++.. +..+ ..++..+...++ ..++++|+||+|.... ..+++. ...+
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~--~~~~~~---------~~~~ 305 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADE--ENIKRL---------EKFV 305 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCH--HHHHHH---------HHHH
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCCh--HHHHHH---------HHHH
Confidence 112234579999999987332 4333 455666666553 2389999999998755 333222 1222
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
...+..+ ...|+..+.++.+|++.+.+.+.
T Consensus 306 ~~~~~~~------~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 306 KEKGLNP------IKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp HHTTCCC------EECBTTTTBTHHHHHHHHHHHHH
T ss_pred HhcCCCe------EEEeCCCCcCHHHHHHHHHHHHH
Confidence 2222222 35678889999999998877653
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=117.05 Aligned_cols=166 Identities=18% Similarity=0.129 Sum_probs=95.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||+|.|++... .. . ...|+...+ ..+.. ++ ..+.++||||.....
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~-~--~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~----------- 87 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEF-PE-V--YVPTVFENYVADIEV-DGKQVELALWDTAGQEDYD----------- 87 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC-C----------CCEEEEEEEE-TTEEEEEEEEECTTCTTCT-----------
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCC-CC-c--CCCcccceEEEEEEE-CCEEEEEEEEECCCcHHHH-----------
Confidence 347999999999999999999997653 11 1 111211111 22233 43 467899999976532
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc----CCC-c
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-K 167 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~----~~~-~ 167 (363)
......+...|++++|+|+++..+-.. ..++..+..... . .|+++|+||+|+... ....+.+.. ... .
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 162 (207)
T 2fv8_A 88 RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-N--VPIILVANKKDLRSD--EHVRTELARMKQEPVRTD 162 (207)
T ss_dssp TTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHH
T ss_pred HHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhhhcc--ccchhhhhhcccCCCCHH
Confidence 122234567899999999873222122 234444444322 2 389999999998755 322222211 000 0
Q ss_pred hHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
....+....+...+ ...|++.+.++.++++.|.+.+.
T Consensus 163 ~~~~~~~~~~~~~~-----~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 163 DGRAMAVRIQAYDY-----LECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HHHHHHHHTTCSEE-----EECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEE-----EEeeCCCCCCHHHHHHHHHHHHH
Confidence 12223333333122 25678888999999998877653
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-15 Score=119.34 Aligned_cols=161 Identities=22% Similarity=0.161 Sum_probs=93.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
...+|+|+|..|+|||||+|.|++.... .... .+.........+... ....+.++||||..... ..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~ 88 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFD-HNIS-PTIGASFMTKTVPCGNELHKFLIWDTAGQERFH-----------SL 88 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCC-TTCC-CCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG-----------GG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCC-CCcC-CCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH-----------hh
Confidence 3479999999999999999999976531 1111 111111122222221 24578899999954321 11
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|+++..+... ..++..+....... .++++|+||+|+........++ ...+...
T Consensus 89 ~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~v~~~~---------~~~~~~~ 157 (192)
T 2fg5_A 89 APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSDIREVPLKD---------AKEYAES 157 (192)
T ss_dssp THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHHT
T ss_pred hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 1223356799999999874332222 23444444433222 3899999999986421011111 2233333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|++.+.++.++++.|.+.+
T Consensus 158 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 158 IGAIVV------ETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp TTCEEE------ECBTTTTBSHHHHHHHHHHTC
T ss_pred cCCEEE------EEeCCCCcCHHHHHHHHHHHH
Confidence 343333 467788899999999877654
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-14 Score=116.41 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=93.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||++.|++... .. ....+.........+.+ ++ ..+.++||||.... ...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 94 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAF-SE-RQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERF-----------RTI 94 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGGG-----------HHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCC-CC-CCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhH-----------HHH
Confidence 37999999999999999999986653 11 11111112222233333 44 47889999996431 112
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+-.. ..++..+....... .++++|.||+|+........++ ...+...
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~~---------~~~~~~~ 163 (201)
T 2hup_A 95 TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN--IVQLLIGNKSDLSELREVSLAE---------AQSLAEH 163 (201)
T ss_dssp HHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCccccccccCHHH---------HHHHHHH
Confidence 2233457899999999873222111 23444444433222 3899999999986431011111 2233344
Q ss_pred cCC-ceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 CDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 ~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+. .++ ..|++.+.++.++++.|...+..
T Consensus 164 ~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 164 YDILCAI------ETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp TTCSEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 343 333 56778889999999988776643
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=114.10 Aligned_cols=159 Identities=18% Similarity=0.196 Sum_probs=89.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE-EEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
..+|+|+|..|+|||||+|.|++...... . ..+....... ... ++ ..+.++||||..... .+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~---~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~--------~~~~ 69 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRES-Y---IPTVEDTYRQVISC-DKSICTLQITDTTGSHQFP--------AMQR 69 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSS-C---CCCSCEEEEEEEEE-TTEEEEEEEEECCSCSSCH--------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-C---CCCccccEEEEEEE-CCEEEEEEEEECCCchhhH--------HHHH
Confidence 47999999999999999999997643111 1 1111111111 222 32 467899999976521 1111
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
. .+...|++++|+|+++..+... ..++..+....+.....|+++|+||+|+... ..+... ....+..
T Consensus 70 ~---~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~--~~v~~~-------~~~~~~~ 137 (172)
T 2erx_A 70 L---SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS--REVQSS-------EAEALAR 137 (172)
T ss_dssp H---HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--CCSCHH-------HHHHHHH
T ss_pred H---hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc--cccCHH-------HHHHHHH
Confidence 1 1234699999999873322221 2344444444321112389999999998643 111100 0112222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+..++ ..|+..+.++.++++.+.+.+
T Consensus 138 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 138 TWKCAFM------ETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp HHTCEEE------ECBTTTTBSHHHHHHHHHHTC
T ss_pred HhCCeEE------EecCCCCcCHHHHHHHHHHHH
Confidence 3333333 467788899999999877654
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=5e-15 Score=119.44 Aligned_cols=160 Identities=19% Similarity=0.134 Sum_probs=91.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..+|+|+|..|+|||||+|.|++..... ....+.........+... ....+.++||||...... + .
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~---~ 91 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSH--DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA--------I---T 91 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCS--SCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT--------T---H
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh--------h---h
Confidence 4799999999999999999999765411 111222222222222221 235678999999765321 1 1
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...|++++|+|+++..+... ..++..+...... ..++++|+||+|+........+ . ...+....
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~~ 160 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA--TIVVMLVGNKSDLSQAREVPTE-E--------ARMFAENN 160 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCT--TCEEEEEEECGGGGGGCCSCHH-H--------HHHHHHHT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECCCcccccccCHH-H--------HHHHHHHc
Confidence 112346799999999873222111 2233333332222 2389999999998653101111 1 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ ..|+..+.++.++++.|.+.+
T Consensus 161 ~~~~~------~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 161 GLLFL------ETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp TCEEE------EECTTTCTTHHHHHHHHHHHH
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 33333 457778889999998877655
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-14 Score=114.24 Aligned_cols=164 Identities=15% Similarity=0.053 Sum_probs=95.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||++.|++... .. ....|+... ...+.. ++ ..+.++||||.... .
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~ 67 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAF-PG---EYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDY-----------D 67 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSC-CS---SCCCCSCCEEEEEEEE-TTEEEEEEEECCCCSGGG-----------T
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCC-CC---CcCCcccceeEEEEEE-CCEEEEEEEEECCCCHhH-----------H
Confidence 347999999999999999999986543 11 111122111 112223 33 35669999997542 1
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc----CCC-c
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-K 167 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~----~~~-~ 167 (363)
......+...|++++|+|+++..+..+. .++..+..... ..|+++|+||+|+... ....+.+.. ... .
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 142 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP 142 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHH
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc--chhhhhhcccccccCCHH
Confidence 2223345688999999998733222222 24444444332 2389999999998754 222111110 000 1
Q ss_pred hHHHHHHhcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 168 PLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+....+. .++ ..|+..+.++.++++.+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 143 QGLAMAKEIGAVKYL------ECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp HHHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEE------EecCCCccCHHHHHHHHHHHH
Confidence 12233333333 222 567888899999999887765
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.5e-15 Score=117.32 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=73.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||++.|++... .... ..+.+.+.....+.+ ++ ..+.++||||... +...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~-~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~~ 73 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAF-NSTF-ISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER-----------FRTI 73 (183)
T ss_dssp EEEEEEECCCCC-----------------CH-HHHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCCC-CCcccceeEEEEEEE-CCEEEEEEEEcCCCChh-----------hhhh
Confidence 47999999999999999999986542 1100 011122222223333 44 5788999999543 2223
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+-.. ..++..+....... .++++|.||+|+........++ ...+...
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~~ 142 (183)
T 2fu5_C 74 TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVSKER---------GEKLALD 142 (183)
T ss_dssp CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSCHHH---------HHHHHHH
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCccCcCCHHH---------HHHHHHH
Confidence 3445568899999999873322122 22334444432222 3899999999987531011111 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|+..+.++.++++.+...+
T Consensus 143 ~~~~~~------~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 143 YGIKFM------ETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp HTCEEE------ECCC---CCHHHHHHHHHHHH
T ss_pred cCCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 343333 457778889999998876655
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=113.28 Aligned_cols=160 Identities=18% Similarity=0.149 Sum_probs=90.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++... . .....|+..... .+... ....+.++||||...... +...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~-~---~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~ 70 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF-V---EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA--------MRDL 70 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC-C---CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT--------HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-C---CCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH--------HHHH
Confidence 37999999999999999999987543 1 111122222222 22221 234678999999765321 1111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.+...|++++|+|+++..+-.. ..++..+...... ...|+++|+||+|+........+ . ...+...
T Consensus 71 ---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~ 137 (167)
T 1c1y_A 71 ---YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGKE-Q--------GQNLARQ 137 (167)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCHH-H--------HHHHHHH
T ss_pred ---HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECccccccccCCHH-H--------HHHHHHH
Confidence 1224699999999873322112 2334444443321 12389999999998643101111 1 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+...++ ..|+..+.++.++++.+.+.+
T Consensus 138 ~~~~~~~-----~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 138 WCNCAFL-----ESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTSCEEE-----ECBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCcEE-----EecCCCCCCHHHHHHHHHHHH
Confidence 3222222 567888899999999876654
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-15 Score=129.75 Aligned_cols=161 Identities=11% Similarity=0.031 Sum_probs=92.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|..|+|||||++.|++... .. . . .|+......+.. .+..+.|+||||..... ...
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~-~~-~--~-pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~~ 226 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEI-VT-T--I-PTIGFNVETVEY-KNISFTVWDVGGQDKIR-----------PLW 226 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCC-EE-E--E-EETTEEEEEEEE-TTEEEEEEECC-----C-----------CSH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCC-CC-c--c-cccceEEEEEec-CcEEEEEEECCCCHhHH-----------HHH
Confidence 346999999999999999999987663 11 1 1 133334444444 67889999999954321 112
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...|++++|+|+++.-+-... ..+..+..... ....|++||+||+|+... ...+++... +......
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~--~~~~~i~~~-----~~~~~~~- 297 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA--MNAAEITDK-----LGLHSLR- 297 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----HTCTTCC-
T ss_pred HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc-cCCCeEEEEEECccCCcc--cCHHHHHHH-----hchhhhh-
Confidence 2233578999999999744443222 12222211111 012389999999998765 333322222 1000000
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+. ...+|++.+.++.++++.|...+
T Consensus 298 ~~~~~----~~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 298 HRNWY----IQATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp SSCEE----EEECBTTTTBTHHHHHHHHHHHH
T ss_pred cCCCE----EEEEECCCCcCHHHHHHHHHHHH
Confidence 01111 12568888999999999887765
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.3e-14 Score=114.01 Aligned_cols=164 Identities=17% Similarity=0.082 Sum_probs=95.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||++.|++... .. ....|+... ...+.. ++ ..+.++||||.....
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~----------- 80 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF-PE---EYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYD----------- 80 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC-CC---SCCCSSCCCEEEEEES-SSCEEEEEEECCCCSSSST-----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CC---CCCCcccceeEEEEEE-CCEEEEEEEEECCCCcchh-----------
Confidence 347999999999999999999997642 11 111122111 122223 33 567899999976532
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc----CC-Cc
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PK 167 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~----~~-~~ 167 (363)
......+...|++++|+|+++..+-... .++..+..... . .|+++|.||+|+... ....+.+.. .. .+
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 155 (194)
T 2atx_A 81 RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-N--VPFLLIGTQIDLRDD--PKTLARLNDMKEKPICVE 155 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECTTSTTC--HHHHHHHTTTTCCCCCHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccc--ccchhhcccccCcccCHH
Confidence 1223345678999999998733222222 34445554432 2 389999999999764 222111110 00 01
Q ss_pred hHHHHHHhcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 168 PLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+....+. .++ ..|++.+.++.++++.+...+
T Consensus 156 ~~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 156 QGQKLAKEIGACCYV------ECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHHHHHTCSCEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEE------EeeCCCCCCHHHHHHHHHHHH
Confidence 12233333333 232 567888899999998876654
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=115.16 Aligned_cols=162 Identities=17% Similarity=0.145 Sum_probs=93.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|+|..|+|||||+|.|++... ......|+...+ ..+.. ++ ..+.++||||....... ...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~----~~~- 76 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYF----VSDYDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAM----REQ- 76 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSC----CSSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCC----HHH-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcC----ccccCCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHH----HHH-
Confidence 3457999999999999999999997743 111222322222 22333 43 46789999997653211 111
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.+...|++++|+|+++..+... ..++..+..... ....++++|+||+|+........+ . ...+
T Consensus 77 ------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~-~--------~~~~ 140 (181)
T 2fn4_A 77 ------YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLESQRQVPRS-E--------ASAF 140 (181)
T ss_dssp ------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGGGCCSCHH-H--------HHHH
T ss_pred ------HHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHH-H--------HHHH
Confidence 1124689999999873222121 223333322221 112389999999998653101111 1 1222
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
....+..++ ..|+..+.++.++++.|...+..
T Consensus 141 ~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 141 GASHHVAYF------EASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp HHHTTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHcCCeEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence 233333333 45777889999999988776643
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-14 Score=115.23 Aligned_cols=161 Identities=12% Similarity=0.095 Sum_probs=90.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH-
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV- 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~- 94 (363)
...+|+|+|..|+|||||+|.|++.... . ....+.+.+.....+.. ++ ..+.++||||... +.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~-~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~ 84 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFP-D-RTEATIGVDFRERAVDI-DGERIKIQLWDTAGQER-----------FRK 84 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-S-SCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHH-----------HHT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCC-C-CCCCCcceEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhh
Confidence 3479999999999999999999866531 1 11122222223333333 33 4788999999432 11
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
......+..+|++++|+|+++..+-. ...++..+...+. ....++++|+||+|+........+ . ...+.
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~-~--------~~~~~ 154 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTD-L--------AQKFA 154 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHH-H--------HHHHH
T ss_pred hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHH-H--------HHHHH
Confidence 11222345789999999987322211 1234444444431 112389999999998643101111 1 22233
Q ss_pred HhcCCceEEecCCCcccccch---hHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGT---EQVRQLLSLVNSVI 208 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~ 208 (363)
...+..++ ..|++.+ .++.++++.|.+.+
T Consensus 155 ~~~~~~~~------~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 155 DTHSMPLF------ETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp HHTTCCEE------ECCSSSGGGGSCHHHHHHHHC---
T ss_pred HHcCCEEE------EEeCCcCCcccCHHHHHHHHHHHH
Confidence 33333333 4566677 78888888765543
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=117.48 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=90.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||+|.|++.... . ....+.+.......+.. ++ ..+.++||||... +..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~-~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~ 89 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFK-Q-DSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQER-----------FRS 89 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHH-----------HSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-c-cCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHh-----------HHH
Confidence 3479999999999999999999976531 1 11112222222233333 43 5788999999422 211
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.....+..+|++++|+|+++..+... ..++..+....... .++++|+||+|+........++ ...+..
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~ 158 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLE---------ASRFAQ 158 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccccccCHHH---------HHHHHH
Confidence 12233457899999999873322111 22333344333222 3899999999986431111111 222333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+..++ ..|+..+.++.++++.|.+.+
T Consensus 159 ~~~~~~~------~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 159 ENELMFL------ETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp HTTCEEE------EECTTTCTTHHHHHHHHHHHH
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 3333333 457788899999999877655
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-14 Score=112.70 Aligned_cols=160 Identities=18% Similarity=0.126 Sum_probs=91.8
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
+....+|+|+|..|+|||||++.+++... .... ..|.......+.+ ++ ..+.++||+|.... .
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~-~~~~---~~t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~--------~-- 81 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTY-VQEE---SPEGGRFKKEIVV-DGQSYLLLIRDEGGPPEL--------Q-- 81 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSC-CCCC---CTTCEEEEEEEEE-TTEEEEEEEEECSSSCCH--------H--
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCC-CCCc---CCCcceEEEEEEE-CCEEEEEEEEECCCChhh--------h--
Confidence 34568999999999999999999886543 1111 1122222223333 44 35677999997541 1
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.+...|++++|+|+++.-+-.. ..++..+..... ....++++|.||+|+.......+. .+....+
T Consensus 82 ------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v~-------~~~~~~~ 147 (184)
T 3ihw_A 82 ------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVID-------DSRARKL 147 (184)
T ss_dssp ------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCSC-------HHHHHHH
T ss_pred ------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccccC-------HHHHHHH
Confidence 1224699999999984332222 223333333211 122389999999998522001000 0012233
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
....+...++ ..|++.+.++.++++.+...+.
T Consensus 148 ~~~~~~~~~~-----e~Sa~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 148 STDLKRCTYY-----ETCATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp HHHTTTCEEE-----EEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHcCCCeEE-----EecCCCCCCHHHHHHHHHHHHH
Confidence 4444322222 5678888999999998776654
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5e-15 Score=116.70 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=91.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..+|+|+|..|+|||||+|.|++.... . ....+.........+... ....+.++||||.... ....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----------~~~~ 72 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFH-E-FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY-----------HSLA 72 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-T-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------GGGH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCC-C-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh-----------hhhh
Confidence 479999999999999999999965431 1 111222222222233331 1457889999996431 1111
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++|+|+++..+-.. ..++..+....... .++++|.||+|+........++ ...+....
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 141 (170)
T 1r2q_A 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANKRAVDFQE---------AQSYADDN 141 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHHHT
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccccccCHHH---------HHHHHHHc
Confidence 223356899999999873322222 22334444433322 3788889999986431011111 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ ..|+..+.++.++++.|.+.+
T Consensus 142 ~~~~~------~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 142 SLLFM------ETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp TCEEE------ECCTTTCTTHHHHHHHHHHTS
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 33333 467788899999998876543
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=120.18 Aligned_cols=160 Identities=18% Similarity=0.127 Sum_probs=91.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||++.|++.... . ....+.+.......+.+ ++ ..+.++||||..... ..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~-~-~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~ 78 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFN-M-DSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYR-----------AI 78 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCC-C-------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTT-----------CC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCC-C-CCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchh-----------hh
Confidence 379999999999999999999976531 1 11112222222233333 44 478899999965422 12
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+... ..++..+....... .+++||+||+|+........++ ...+...
T Consensus 79 ~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~~ 147 (223)
T 3cpj_B 79 TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAHLRAVPTEE---------SKTFAQE 147 (223)
T ss_dssp CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHHH---------HHHHHHH
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 2334567899999999873332222 22344444433222 3899999999986431011111 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.+..++ ..|+..+.++.++++.|...+.
T Consensus 148 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 148 NQLLFT------ETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp TTCEEE------ECCCC-CCCHHHHHHHHHHHHT
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 333333 4577788899999998877653
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=116.64 Aligned_cols=166 Identities=10% Similarity=0.005 Sum_probs=92.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+..+|+|+|.+|+|||||++.|++...-. ...|.......+.+ ++..+.++||||..... ..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~ 83 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEELAI-GNIKFTTFDLGGHIQAR-----------RL 83 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEEEEEE-TTEEEEEEECCCSGGGT-----------TS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-----cccCCCCCeEEEEE-CCEEEEEEECCCCHHHH-----------HH
Confidence 445799999999999999999999765311 11122223334444 67889999999975421 12
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCc-chhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+..+|++++|+|+++.-+-.. ...+..+..... ....|+++|.||+|+... ..+.+.+++.... ..-...+.
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~ 161 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE-LKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQRIE 161 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-CCC---CC
T ss_pred HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchh-hcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-cccccccc
Confidence 2334568899999999984433222 222333222111 112389999999998753 1122222222100 00000000
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.. .... ....|++.+.++.++++.|.+
T Consensus 162 ~~-~~~~----~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 162 GQ-RPVE----VFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp SS-CCEE----EEECBTTTTBSHHHHHHHHHT
T ss_pred cc-ceEE----EEEeECCcCCCHHHHHHHHHh
Confidence 00 1111 235788889999999987653
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-15 Score=131.65 Aligned_cols=134 Identities=15% Similarity=0.204 Sum_probs=72.3
Q ss_pred EEEEcCCCCchHHHHHHhhcccccccccCC-CCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCCh---HH----HHH
Q 017924 22 VVLLGRTGNGKSATGNSILGRKAFKASAGS-SGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGS---EF----VGK 91 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~~~~~~~~~-~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~---~~----~~~ 91 (363)
|+|||+||||||||+|+|+|.......... ........+.......+ ..++++|++|++...... .. +..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~ 124 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDA 124 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHH
Confidence 999999999999999999998532111111 11112223333333122 268899999997642111 01 122
Q ss_pred HHHHHHhcc-----------CCCccE-EEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHH
Q 017924 92 EIVKCLGMA-----------KDGIHA-FLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (363)
Q Consensus 92 ~~~~~~~~~-----------~~~~~~-~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~ 159 (363)
.+..++... ..++|+ ++|+.+.++.++..+..+++.+. ..+ ++|+|+||+|.++. ..+..
T Consensus 125 q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~----~~~--~vI~Vi~KtD~Lt~--~E~~~ 196 (427)
T 2qag_B 125 QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD----SKV--NIIPIIAKADAISK--SELTK 196 (427)
T ss_dssp HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC----SCS--EEEEEESCGGGSCH--HHHHH
T ss_pred HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh----hCC--CEEEEEcchhccch--HHHHH
Confidence 222222111 112455 55566776678888755554443 222 89999999999977 55665
Q ss_pred Hhcc
Q 017924 160 FLGH 163 (363)
Q Consensus 160 ~~~~ 163 (363)
+...
T Consensus 197 l~~~ 200 (427)
T 2qag_B 197 FKIK 200 (427)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=115.97 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=92.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||+|.|++... .. ....+.+.+.....+.. ++ ..+.++||||..... .
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~-----------~ 78 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSF-DN-TYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFR-----------S 78 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCC-CS-SCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------G
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CC-CCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHH-----------H
Confidence 347999999999999999999986643 11 11222333333333334 43 478899999954321 1
Q ss_pred HHhccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.....+...|++++|+|+++..+.. ...++..+....... .++++|+||+|+........++ ......
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 147 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEE---------GERKAK 147 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccCcCCHHH---------HHHHHH
Confidence 1112234679999999987322211 223344444433323 3899999999986431111111 112223
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+..++ ..|+..+.++.++++.|.+.+
T Consensus 148 ~~~~~~~------~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 148 ELNVMFI------ETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp HHTCEEE------EEBTTTTBSHHHHHHHHHHTC
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 3333333 457778889999998876543
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-14 Score=117.39 Aligned_cols=168 Identities=12% Similarity=0.051 Sum_probs=97.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||++.|++... . .....|+...+. .+... ....+.++||+|.... .
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~-~---~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~ 89 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCY-P---ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY-----------D 89 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCC-C---SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG-----------T
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCC-C---CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH-----------H
Confidence 3458999999999999999999987653 1 111122222222 12221 2346789999996432 1
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc----cCCCch
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG----HECPKP 168 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~----~~~~~~ 168 (363)
......+..+|++++|+|+++.-+-.. ..++..+..... . .++++|.||+|+.... ........ ......
T Consensus 90 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~ 165 (214)
T 3q3j_B 90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-S--TRVLLIGCKTDLRTDL-STLMELSHQKQAPISYEQ 165 (214)
T ss_dssp TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-T--SEEEEEEECGGGGGCH-HHHHHHHHTTCCCCCHHH
T ss_pred HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccch-hhhhhhcccccCccCHHH
Confidence 223345668899999999984433332 344555555432 2 3899999999987530 00000000 000011
Q ss_pred HHHHHHhcCC-ceEEecCCCcccccchhH-HHHHHHHHHHHHH
Q 017924 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSVIV 209 (363)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~ 209 (363)
...+....+. .++ .+|++.+.+ +.++++.+...+.
T Consensus 166 ~~~~~~~~~~~~~~------e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 166 GCAIAKQLGAEIYL------EGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp HHHHHHHHTCSEEE------ECCTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEE------EeccCCCcccHHHHHHHHHHHHh
Confidence 2334444444 333 567888888 9999998877654
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.6e-15 Score=118.86 Aligned_cols=162 Identities=14% Similarity=0.108 Sum_probs=92.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..+|+|+|..|+|||||+|.|++... .. ....+.........+.+. ....+.++||||...... ..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~ 81 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTF-DP-ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT-----------LT 81 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC-----------SH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-Cc-cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh-----------hh
Confidence 47999999999999999999997653 11 111222222223333331 135688999999654221 11
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++|+|+++..+... ..++..+..... ....++++|+||+|+... ....+. ...+....
T Consensus 82 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~--~~~~~~--------~~~~~~~~ 150 (195)
T 1x3s_A 82 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENR--EVDRNE--------GLKFARKH 150 (195)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSC--CSCHHH--------HHHHHHHT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCccc--ccCHHH--------HHHHHHHc
Confidence 122346799999999873322111 122222222211 112488999999998543 111111 12233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+..++ ..|+..+.++.++++.|.+.+..
T Consensus 151 ~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 151 SMLFI------EASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp TCEEE------ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCEEE------EecCCCCCCHHHHHHHHHHHHHh
Confidence 33333 45777889999999988877654
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=115.27 Aligned_cols=161 Identities=24% Similarity=0.181 Sum_probs=92.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|+|..|+|||||+|.|++... ......++... ...... ++. .+.++||||....... .
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~----~--- 83 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIF----VDDYDPTIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAM----R--- 83 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC----CSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCSCGGGCSS----H---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCCccceeEEEEEe-CCcEEEEEEEECCCchhhHHH----H---
Confidence 3457999999999999999999996643 11112222222 222233 444 4567999996542211 1
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
. ..+...|++++|+|+++.-+-. ...++..+..... ....|+++|+||+|+........+ . ...+
T Consensus 84 ~----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~-~--------~~~~ 149 (183)
T 3kkq_A 84 E----QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKVTRD-Q--------GKEM 149 (183)
T ss_dssp H----HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCSCHH-H--------HHHH
T ss_pred H----HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchhccCcCHH-H--------HHHH
Confidence 1 1123469999999987332211 1233333433222 112389999999998653111111 1 2223
Q ss_pred HHhcCCceEEecCCCccccc-chhHHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~ 209 (363)
....+..++ ..|+. .+.++.++++.+.+.+.
T Consensus 150 ~~~~~~~~~------~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 150 ATKYNIPYI------ETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp HHHHTCCEE------EEBCSSSCBSHHHHHHHHHHHHH
T ss_pred HHHhCCeEE------EeccCCCCCCHHHHHHHHHHHHh
Confidence 333344444 45677 78899999998877654
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.7e-15 Score=117.55 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=91.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++..... ....+.+.......+.. ++ ..+.++||||...... .
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~ 86 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQP--VHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRS-----------I 86 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSC-----------C
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhh-----------h
Confidence 4799999999999999999999765311 11111222222233333 33 4788999999654221 1
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+... ..++..+....... .++++|+||+|+........+ . ...+...
T Consensus 87 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~-~--------~~~~~~~ 155 (191)
T 2a5j_A 87 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESRRDVKRE-E--------GEAFARE 155 (191)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH-H--------HHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCCccccCHH-H--------HHHHHHH
Confidence 1122346899999999873222221 23344444432222 389999999998643101111 1 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|+..+.++.++++.|.+.+
T Consensus 156 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 156 HGLIFM------ETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp HTCEEE------EECTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 333333 457778889999998876654
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=114.55 Aligned_cols=160 Identities=18% Similarity=0.102 Sum_probs=92.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
...+|+|+|..|+|||||+|.|++... .. ....+...+.....+...+ ...+.++||||...... .
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~ 70 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIF-TK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA-----------I 70 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC-CC-CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC-----------C
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCC-CC-CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH-----------H
Confidence 357999999999999999999997643 11 1111122222223333311 34788999999544211 1
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|+++..+... ..++..+..... . .++++|+||+|+........+ . ...+...
T Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~ 138 (168)
T 1z2a_A 71 TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-D--IPTALVQNKIDLLDDSCIKNE-E--------AEGLAKR 138 (168)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC-S--CCEEEEEECGGGGGGCSSCHH-H--------HHHHHHH
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccCcccccCHH-H--------HHHHHHH
Confidence 1122346799999999873222111 223344444332 2 389999999998753101111 1 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|+..+.++.++++.+.+.+
T Consensus 139 ~~~~~~------~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 139 LKLRFY------RTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp HTCEEE------ECBTTTTBSSHHHHHHHHHHH
T ss_pred cCCeEE------EEecCCCCCHHHHHHHHHHHH
Confidence 343333 457777889999998877654
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-14 Score=119.73 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=95.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|.+|||||||+|.|+|...+.+ ... ++|.......+.. +..+.++||||......... .+.+.+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~-~~p-g~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVG-NWP-GVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSP--EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCC-SSS-CCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCccc-CCC-CCcEEEEEEEEec--CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence 36899999999999999999998764322 222 2343333222221 56788999999876432221 122322222
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.. ..+|++++|+|++ .+. ....++..+.. .+ .|+++++||+|.... ..+. .....+....+.
T Consensus 77 ~~-~~~d~vi~V~D~t-~~e-~~~~~~~~l~~-~~----~p~ilv~NK~Dl~~~--~~~~--------~~~~~l~~~lg~ 138 (272)
T 3b1v_A 77 LS-QRADSILNVVDAT-NLE-RNLYLTTQLIE-TG----IPVTIALNMIDVLDG--QGKK--------INVDKLSYHLGV 138 (272)
T ss_dssp HT-TCCSEEEEEEEGG-GHH-HHHHHHHHHHH-TC----SCEEEEEECHHHHHH--TTCC--------CCHHHHHHHHTS
T ss_pred hc-CCCCEEEEEecCC-chH-hHHHHHHHHHh-cC----CCEEEEEEChhhCCc--CCcH--------HHHHHHHHHcCC
Confidence 21 4689999999987 321 11222222222 12 389999999997532 1110 112333333343
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.++ .+|+..+.++.++++.+...+.
T Consensus 139 ~vi------~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 139 PVV------ATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp CEE------ECBTTTTBSHHHHHHHHHHSCT
T ss_pred CEE------EEEccCCCCHHHHHHHHHHHHh
Confidence 332 5688889999999998877553
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=117.97 Aligned_cols=162 Identities=15% Similarity=0.084 Sum_probs=68.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc-ccccccCCCCCce--eeEeEEEEeeC---CcEEEEEeCCCCCCCCCChHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTK--TCEMKTTVLKD---GQVVNVIDTPGLFDLSAGSEFVGK 91 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~-~~~~~~~~~~~t~--~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~ 91 (363)
...+|+|+|..|+|||||++.|++.. .|. .....|+ +.....+.+.+ ...+.++||||..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------- 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFL---KDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD----------- 84 (208)
T ss_dssp EEEEEEEC-------------------------------------CEEEECTTSSEEEEEEEEETTTTH-----------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCccc---CCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH-----------
Confidence 34799999999999999999999772 111 1111222 22233333422 3478899999953
Q ss_pred HHHHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhcc-ccccceEEEEeCCCCCC-cchhhHHHHhccCCCch
Q 017924 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLE-DHEKTLEDFLGHECPKP 168 (363)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~i~v~n~~D~~~-~~~~~l~~~~~~~~~~~ 168 (363)
.+.......+..+|++++|+|+++..+-.. ..++..+...... ....++++|+||+|+.. ......+ .
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~---------~ 155 (208)
T 2yc2_C 85 LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLD---------M 155 (208)
T ss_dssp HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHH---------H
T ss_pred HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHH---------H
Confidence 233445556678999999999873332122 2344444443320 01238999999999875 2001111 1
Q ss_pred HHHHHHhcCCceEEecCCCcccccc-hhHHHHHHHHHHHHH
Q 017924 169 LKEILQLCDNRCVLFDNKTKDEAKG-TEQVRQLLSLVNSVI 208 (363)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~ 208 (363)
...+....+..++ ..|+.. +.++.++++.|...+
T Consensus 156 ~~~~~~~~~~~~~------~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 156 AQDWATTNTLDFF------DVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp HHHHHHHTTCEEE------ECCC-------CHHHHHHHHHH
T ss_pred HHHHHHHcCCEEE------EeccCCCCcCHHHHHHHHHHHH
Confidence 2333444443333 457777 888999888776654
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=132.55 Aligned_cols=158 Identities=19% Similarity=0.243 Sum_probs=98.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeCCcEEEEEeCCCCC-CCCCChHHH-HHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLF-DLSAGSEFV-GKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~DtpG~~-~~~~~~~~~-~~~~~~ 95 (363)
+.+|+|+|.+|+|||||+|.|+|..... .+... .|.+.....+.+ ++..+.++||||+. ......... .+....
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~--vs~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAI--VTDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCC--CCCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCc--cCCCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 3689999999999999999999875311 22222 233333344455 78889999999987 432111100 011111
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.+..+|++++|+|+++..+..+...++.+ .. .|+++|+||+|+... ...++ +.....
T Consensus 320 ----~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~~---~piivV~NK~DL~~~--~~~~~---------~~~~~~- 376 (482)
T 1xzp_A 320 ----EIEKADIVLFVLDASSPLDEEDRKILERI----KN---KRYLVVINKVDVVEK--INEEE---------IKNKLG- 376 (482)
T ss_dssp ----HHHHCSEEEEEEETTSCCCHHHHHHHHHH----TT---SSEEEEEEECSSCCC--CCHHH---------HHHHHT-
T ss_pred ----HhhcccEEEEEecCCCCCCHHHHHHHHHh----cC---CCEEEEEECcccccc--cCHHH---------HHHHhc-
Confidence 22357999999999866676665544332 21 389999999998643 22221 111211
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+ ...|++++.++.+|++.|...+
T Consensus 377 ~~~~~------i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 377 TDRHM------VKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp CSTTE------EEEEGGGTCCHHHHHHHHHHHT
T ss_pred CCCcE------EEEECCCCCCHHHHHHHHHHHH
Confidence 11122 3568889999999999888754
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-15 Score=134.89 Aligned_cols=161 Identities=17% Similarity=0.108 Sum_probs=94.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|||.+|+|||||+|.|+|......... .++|.+..+....+ .+..+.++||+|+.... ..+...+......
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~-~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDT-PGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCC-CCCccceEEEEEEE-CCceEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 5899999999999999999998754211122 22343444444444 67788999999986421 1134455555555
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
++..+|++++|+|+.+.++..+......+.. ...|+++|+||+|.... . ..... ++ . .+.
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~--~---~~~~~----~~----~-lg~- 138 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEM--R---ANIYD----FY----S-LGF- 138 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC----------CCCS----SG----G-GSS-
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccc--h---hhHHH----HH----H-cCC-
Confidence 5567899999999987788776555444432 12389999999998643 1 00111 11 1 111
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
......|+..+.++.+|++.+...+.
T Consensus 139 ----~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 139 ----GEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp ----CCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred ----CCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 12235688889999999998877664
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=114.66 Aligned_cols=164 Identities=16% Similarity=0.067 Sum_probs=93.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC---cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG---QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|+|..|+|||||++.|++... .... ..+...+.....+.+ ++ ..+.++||||...... +
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~-~~t~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~--------~ 72 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETF-GKQY-KQTIGLDFFLRRITL-PGNLNVTLQIWDIGGQTIGGK--------M 72 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGT-THHH-HHTTTSSEEEEEEEE-TTTEEEEEEEEECTTCCTTCT--------T
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcC-CCCC-CCceeEEEEEEEEEe-CCCCEEEEEEEECCCCccccc--------h
Confidence 3457999999999999999999997653 1110 111112222333334 33 5788999999765321 1
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccc-eEEEEeCCCCCCcchhhHHHHhccCCCchHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~-~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~ 171 (363)
....+..+|++++|+|+++..+-.. ..++..+..........+ +++|.||+|+........+ . ...
T Consensus 73 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~-~--------~~~ 140 (178)
T 2hxs_A 73 ---LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPE-K--------HLR 140 (178)
T ss_dssp ---HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHH-H--------HHH
T ss_pred ---hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHH-H--------HHH
Confidence 1112346899999999873322222 233344444321111124 7889999998643001111 1 222
Q ss_pred HHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+....+..++ ..|+..+.++.++++.|...+.
T Consensus 141 ~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 141 FCQENGFSSH------FVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp HHHHHTCEEE------EECTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHcCCcEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 3333333333 4677888999999998877653
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=115.12 Aligned_cols=165 Identities=18% Similarity=0.110 Sum_probs=88.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||++.+++... .. ....|+...+. .+... ....+.++||||..... .
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~~---~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 71 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-PT---DYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN-----------R 71 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C-------------CBCCCC-------CEEECCCC-CTTT-----------T
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CC---CCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-----------h
Confidence 458999999999999999999986542 11 11112111111 11110 13355699999965422 1
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHH-h--ccCCCchHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF-L--GHECPKPLK 170 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~-~--~~~~~~~~~ 170 (363)
.....+...|++++|+|+++..+-... .++..+..... . .|+++|+||+|+... ...... . ..-......
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 72 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-G--VPIVLVGTKLDLRDD--KQFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC--HHHHHHC--CCCCCHHHHH
T ss_pred hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhhcC--cccccccccCCCCCHHHHH
Confidence 223345678999999998733222222 24444444332 2 389999999998654 211000 0 000000122
Q ss_pred HHHHhcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+....+. .++ ..|++.+.++.++++.+.+.+
T Consensus 147 ~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 147 ELKKLIGAPAYI------ECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 33333343 232 567888899999999876654
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-15 Score=132.05 Aligned_cols=128 Identities=19% Similarity=0.200 Sum_probs=76.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee---E-------------------------------------
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC---E------------------------------------- 59 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~---~------------------------------------- 59 (363)
..|+|||.+|||||||+|+|+|...+..+ .+.+|... .
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~--~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRG--SGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCC--SSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCC--CCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 49999999999999999999997643221 11221100 0
Q ss_pred --------------eEEEEeeCCcEEEEEeCCCCCCCCCC--hHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHH
Q 017924 60 --------------MKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET 123 (363)
Q Consensus 60 --------------~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~ 123 (363)
...+.......+++|||||+...... ...+...+...+..++.++|+++++++.. ........
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~-~~~~~~~~ 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA-NQDLATSD 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET-TSCGGGCH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc-cCCcCCHH
Confidence 00011112446889999998874221 12234455555555566889999998765 22222233
Q ss_pred HHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 124 AVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 124 ~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.+.++..+... ..++++|+||+|....
T Consensus 192 ~~~l~~~~~~~--~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 192 AIKISREVDPS--GDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHHSCTT--CTTEEEEEECGGGCCT
T ss_pred HHHHHHHhccc--CCCEEEEEeCCccCCC
Confidence 44444443222 2389999999998854
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=128.52 Aligned_cols=150 Identities=19% Similarity=0.242 Sum_probs=77.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccC----CCCCceeeEeEEEE-eeCC--cEEEEEeCCCCCCCCCCh---HHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG----SSGVTKTCEMKTTV-LKDG--QVVNVIDTPGLFDLSAGS---EFV 89 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~----~~~~t~~~~~~~~~-~~~~--~~~~l~DtpG~~~~~~~~---~~~ 89 (363)
.+|+|||+||||||||+|+|+|......+.. ....++......+. ...+ ..++++||+|+....... ..+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i 111 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 111 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHH
Confidence 5799999999999999999998764211110 01112211111111 1112 367899999987642111 111
Q ss_pred HH----HHHHHH---------hccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchh
Q 017924 90 GK----EIVKCL---------GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK 155 (363)
Q Consensus 90 ~~----~~~~~~---------~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~ 155 (363)
.. .+...+ ......+|+++|+++.+ +.++..+..++..+. . . .++|+|+||+|.... .
T Consensus 112 ~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~-~--v~iIlVinK~Dll~~--~ 183 (418)
T 2qag_C 112 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---E-K--VNIIPLIAKADTLTP--E 183 (418)
T ss_dssp HHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---T-T--SEEEEEEESTTSSCH--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---c-c--CcEEEEEEcccCccH--H
Confidence 11 111111 01123456788888765 578887765555443 2 2 289999999999865 5
Q ss_pred hHHHHhccCCCchHHHHHHhcCCceEE
Q 017924 156 TLEDFLGHECPKPLKEILQLCDNRCVL 182 (363)
Q Consensus 156 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (363)
.+..+... +...+...+..++.
T Consensus 184 ev~~~k~~-----i~~~~~~~~i~~~~ 205 (418)
T 2qag_C 184 ECQQFKKQ-----IMKEIQEHKIKIYE 205 (418)
T ss_dssp HHHHHHHH-----HHHHHHHHTCCCCC
T ss_pred HHHHHHHH-----HHHHHHHcCCeEEe
Confidence 55544444 44444444444443
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.8e-15 Score=122.00 Aligned_cols=166 Identities=17% Similarity=0.163 Sum_probs=96.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||+|.|++... ..... .+.............++ ..+.++||||........
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~-~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------- 78 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRF-EKNYN-ATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK--------- 78 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCST-TCEEE-TTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC---------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC-CCCCC-CccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHH---------
Confidence 457999999999999999999996653 11111 11111111111222122 568899999965432111
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
...+..+|++++|+|+++..+..+ ..++..+....... .++++|+||+|+........+ . ...+..
T Consensus 79 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~ 145 (218)
T 4djt_A 79 --DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNRQKISKK-L--------VMEVLK 145 (218)
T ss_dssp --HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC----CCHH-H--------HHHHTT
T ss_pred --HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH-H--------HHHHHH
Confidence 112346899999999974433222 23445555554433 389999999998743101111 1 112222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHcCC
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 213 (363)
..+..++ ..|++.+.++.++++.+...+.....
T Consensus 146 ~~~~~~~------~~Sa~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 146 GKNYEYF------EISAKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp TCCCEEE------EEBTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred HcCCcEE------EEecCCCCCHHHHHHHHHHHHhcccc
Confidence 2232333 56788889999999999888865433
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-15 Score=135.33 Aligned_cols=160 Identities=18% Similarity=0.111 Sum_probs=93.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|||.+|+|||||+|.|+|........ ..++|.+.......+ .+..+.++||||+... ...+.+.+......
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~-~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVED-TPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIG---DEPFLAQIRQQAEI 98 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCcceeEEEEEEEE-CCceEEEEECCCCCCc---chHHHHHHHHHHHh
Confidence 699999999999999999999876421212 223344444444444 6778899999998742 22223455555555
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
++..+|++++|+|....++..+....+.+.. . ..++++|+||+|.... . ..... ++ ..-...
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-~----~~pvilV~NK~D~~~~--~---~~~~e----~~----~lg~~~ 160 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAADEEVAKILYR-T----KKPVVLAVNKLDNTEM--R---ANIYD----FY----SLGFGE 160 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-C----CSCEEEEEECC--------------CC----SG----GGSSSS
T ss_pred hHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-c----CCCEEEEEECccchhh--h---hhHHH----HH----HcCCCc
Confidence 5567899999999887788887766666543 1 2389999999997643 1 01111 01 110011
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
. ...|+..+.++.+|++.+...+
T Consensus 161 ~------~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 161 P------YPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp E------EECCTTTCTTHHHHHHHHHTTG
T ss_pred e------EEeecccccchHHHHHHHHhhc
Confidence 1 1456777788888888776554
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=116.66 Aligned_cols=164 Identities=10% Similarity=0.065 Sum_probs=94.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccC------CCCCceeeEeEEE---Eee-CCcEEEEEeCCCCCCCCCChH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKTT---VLK-DGQVVNVIDTPGLFDLSAGSE 87 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~------~~~~t~~~~~~~~---~~~-~~~~~~l~DtpG~~~~~~~~~ 87 (363)
...+|+|+|..|+|||||++.|.|...-..... ....|........ ... ....+.++||||.....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 457999999999999999999987643111000 0011221111111 110 13468899999976531
Q ss_pred HHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhc----cccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 88 FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG----KNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
.+ ....+..+|++++|+|++..........+..+...+. .....|+++|.||+|+... ...++
T Consensus 89 ----~~---~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~---- 155 (198)
T 3t1o_A 89 ----AS---RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVEM---- 155 (198)
T ss_dssp ----HH---HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHHH----
T ss_pred ----HH---HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHHH----
Confidence 11 1224467899999999873333334444443333221 1122489999999998754 22221
Q ss_pred CCCchHHHHHHhcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 164 ECPKPLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 164 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+..+....+. .++ ..|+..+.++.++++.+...+.
T Consensus 156 -----~~~~~~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 156 -----VRAVVDPEGKFPVL------EAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp -----HHHHHCTTCCSCEE------ECBGGGTBTHHHHHHHHHHHHH
T ss_pred -----HHHHHHhcCCceEE------EEecCCCcCHHHHHHHHHHHHH
Confidence 2223333333 222 5688889999999998877653
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-14 Score=112.21 Aligned_cols=162 Identities=22% Similarity=0.137 Sum_probs=87.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.|++..... ....+.+.......+.. ++ ..+.++||+|...... .+...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-------~~~~~- 71 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDH--AHEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGG-------WLQDH- 71 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC---------------CH-
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcc--cccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccch-------hhhhh-
Confidence 689999999999999999998654311 11111222222233333 33 4677999999765210 01111
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.+...|++++|+|+++.-+-.. ..++..+...... ...|+++|.||+|+........+ . ...+....
T Consensus 72 --~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~-~--------~~~~~~~~ 139 (169)
T 3q85_A 72 --CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLE-E--------GRHLAGTL 139 (169)
T ss_dssp --HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSCHH-H--------HHHHHHHT
T ss_pred --hhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCCHH-H--------HHHHHHHc
Confidence 1224699999999873222111 2233333333221 12389999999998643111111 1 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+..++ ..|+..+.++.++++.+.+.+..
T Consensus 140 ~~~~~------~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 140 SCKHI------ETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCcEE------EecCccCCCHHHHHHHHHHHHHh
Confidence 44333 56788889999999988776643
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-13 Score=111.01 Aligned_cols=172 Identities=13% Similarity=0.148 Sum_probs=93.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc-cccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~ 93 (363)
..+.+|+|+|++|||||||+|.|+|... ....+..+... ... .+.+ ++ .+.++||||+........ ......
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~-~~~--~~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ-LIN--LFEV-AD-GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------C-CEE--EEEE-ET-TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccce-eeE--EEEe-cC-CEEEEECcCCcccccCHHHHHHHHHH
Confidence 4567999999999999999999998761 11112223221 111 2222 22 567999999864221111 111111
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
...+.......++++++++++...+..+.....++.. .+ .+++++.||+|..+. ......+.. +..++
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~----~~~~~v~nK~D~~s~--~~~~~~~~~-----~~~~~ 166 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SN----IAVLVLLTKADKLAS--GARKAQLNM-----VREAV 166 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCH--HHHHHHHHH-----HHHHH
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-cC----CCeEEEEecccCCCc--hhHHHHHHH-----HHHHH
Confidence 2222222356789999999875666544444443332 22 278888999998865 322221222 33344
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
........ ...+|+.++.++.++++.|.+...
T Consensus 167 ~~~~~~~~----~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 167 LAFNGDVQ----VETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGGCSCEE----EEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HhcCCCCc----eEEEeecCCCCHHHHHHHHHHHHh
Confidence 33322111 125677788899999998877653
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-13 Score=123.05 Aligned_cols=167 Identities=13% Similarity=0.173 Sum_probs=102.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccc-cccCCCCCceeeEeEEEEee--------------C--------CcEEEEE
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLK--------------D--------GQVVNVI 74 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~l~ 74 (363)
...+|+++|+.|+|||||++.|+|..... ......+.|+...+....+. . ...++|+
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 44799999999999999999999764211 11112334544333322210 0 1578999
Q ss_pred eCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCC-CHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcc
Q 017924 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (363)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~ 153 (363)
||||.. .+...+......+|++++|+|+++.. .......+..+..+ +. .++++++||+|+...
T Consensus 89 DtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~~~- 152 (410)
T 1kk1_A 89 DAPGHE-----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVDK- 152 (410)
T ss_dssp ECSSHH-----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH-
T ss_pred ECCChH-----------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCCCH-
Confidence 999942 33344444455779999999998554 55555555555433 32 278999999999865
Q ss_pred hhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+...... +..++....... ......|+..+.++.+|++.|...+.
T Consensus 153 -~~~~~~~~~-----i~~~l~~~~~~~---~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 153 -EKALENYRQ-----IKEFIEGTVAEN---APIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp -HHHHHHHHH-----HHHHHTTSTTTT---CCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred -HHHHHHHHH-----HHHHHHhcCcCC---CeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 333333333 333433211100 01225678888999999999887654
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-14 Score=113.77 Aligned_cols=167 Identities=11% Similarity=0.048 Sum_probs=89.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|.+|||||||++.|++.......+ |.......+.+ ++..+.++||||..... ..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~ 85 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP-----TLHPTSEELTI-AGMTFTTFDLGGHIQAR-----------RV 85 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------C-----CCCCSCEEEEE-TTEEEEEEEECC----C-----------CG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCC-----CCCceeEEEEE-CCEEEEEEECCCcHhhH-----------HH
Confidence 445799999999999999999999765311111 11112233344 66888999999965421 12
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCc-chhhHHHHhccCCCchHHH-H-
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKE-I- 172 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~~-~- 172 (363)
....+..+|++++|+|+++.-+-.. ..++..+..... ....|+++|.||+|+... ..+.+.+++.. ....... .
T Consensus 86 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~ 163 (198)
T 1f6b_A 86 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDET-IANVPILILGNKIDRPEAISEERLREMFGL-YGQTTGKGSV 163 (198)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTSCEEEEEECTTSTTCCCHHHHHHHHTC-TTTCCCSSCC
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEEECCCccccCCHHHHHHHhCc-cccccccccc
Confidence 2234557899999999974332222 222232222111 112389999999998643 11222323221 0000000 0
Q ss_pred -HHhc-CCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 173 -LQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 173 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
+... ..... ...+|++++.++.++++.|.+
T Consensus 164 ~~~~~~~~~~~----~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 164 SLKELNARPLE----VFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp CTTTCCSCCEE----EEECBTTTTBSHHHHHHHHHT
T ss_pred ccccccCceEE----EEEEECCCCCCHHHHHHHHHH
Confidence 0000 01111 236788899999999987754
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-13 Score=119.36 Aligned_cols=170 Identities=15% Similarity=0.100 Sum_probs=95.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|.+|||||||+|.|+|...... . ....|.+.....+.+ ++..+.++||+|+.... +.. ..+.+...+. .
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~-~-~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~l-p~~-lve~f~~tl~-~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVD-T-KLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGI-PPQ-IVDAFFVTLS-E 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSSC-CGG-GHHHHHHHHH-G
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc-C-CcccccCCEEEEEEE-CCEEEEEEeCCCchhcC-CHH-HHHHHHHHHH-H
Confidence 499999999999999999998764211 1 111233333344445 66788999999975421 222 2233433332 3
Q ss_pred CCCccEEEEEeecCCCC--CHHHHHH-HHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc-
Q 017924 101 KDGIHAFLVVFSVTNRF--SQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC- 176 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~--~~~~~~~-l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~- 176 (363)
...+|.+++|+|+++.. ....... ...+.. ++. ...++++|.||+|.... . ....+.. +..+....
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~-~~~p~ilV~NK~Dl~~~--~-~~~~~~~-----~~~l~~~l~ 324 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGV-SGKPILVTLNKIDKING--D-LYKKLDL-----VEKLSKELY 324 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTC-CSCCEEEEEECGGGCCS--C-HHHHHHH-----HHHHHHHHC
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCc-CCCCEEEEEECCCCCCc--h-HHHHHHH-----HHHHHHHhc
Confidence 45789999999987432 1122222 223333 221 11389999999998764 2 1111111 11122222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
..... ....|+.++.++.+|++.|...+..
T Consensus 325 ~~~~~----~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 325 SPIFD----VIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp SCEEE----EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCc----EEEEECCCCcCHHHHHHHHHHHhcc
Confidence 11111 1356888899999999999887765
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-13 Score=109.30 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=93.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||++.|++... .. ....|..... ..+... ....+.++||||.... ..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~---~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~ 70 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PE---NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY-----------DN 70 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CS---SCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG-----------TT
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CC---CCCCccceeEEEEEEECCEEEEEEEEECCCChhh-----------hh
Confidence 347999999999999999999997643 11 1111221111 122221 2346789999996432 11
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc---CCC-chH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KPL 169 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~---~~~-~~~ 169 (363)
.....+...|++++|+|+++..+-.. ..++..+..... . .|+++|.||+|+.... ..+.++... ... +..
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 146 (184)
T 1m7b_A 71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQG 146 (184)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHH
T ss_pred hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHHH
Confidence 22334568899999999873322222 223344444332 2 3899999999987431 111111100 000 112
Q ss_pred HHHHHhcCCceEEecCCCccccc-chhHHHHHHHHHHHHH
Q 017924 170 KEILQLCDNRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVI 208 (363)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~ 208 (363)
..+....+...++ ..|++ .+.++.++++.+.+.+
T Consensus 147 ~~~~~~~~~~~~~-----e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 147 ANMAKQIGAATYI-----ECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHHHTCSEEE-----ECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEE-----EeeecCCCcCHHHHHHHHHHHH
Confidence 3334343422222 56776 5789999998876654
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.54 E-value=7.5e-14 Score=112.11 Aligned_cols=169 Identities=17% Similarity=0.109 Sum_probs=91.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH--
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL-- 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~-- 97 (363)
.+|+|+|..|+|||||+|.|++... ...... +.+.... .+.+ . .+.++||||+......+......+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~-~~t~~~~--~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRP-GVTRKII--EIEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSST-TCTTSCE--EEEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC-ccCCCC-CccceeE--EEec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 4899999999999999999997753 222222 2222222 2222 2 6779999997654433322222222221
Q ss_pred -hcc-CCCccEEEEEeecCCCCCHHHHHHH---------HHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCC
Q 017924 98 -GMA-KDGIHAFLVVFSVTNRFSQEEETAV---------HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (363)
Q Consensus 98 -~~~-~~~~~~~l~v~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~ 166 (363)
... ...+++++++.|.. .+......+. ..+....... .|+++|+||+|+... . .+..
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~--~~~~----- 142 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRELD--IPTIVAVNKLDKIKN--V--QEVI----- 142 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHHTT--CCEEEEEECGGGCSC--H--HHHH-----
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHhcC--CceEEEeehHhccCc--H--HHHH-----
Confidence 221 34567777877765 2211101111 1112211112 389999999998865 2 1111
Q ss_pred chHHHHHHhcCCceEE-ecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 167 KPLKEILQLCDNRCVL-FDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 167 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
..+....+..+.. .......|++.+.++.++++.+...+..
T Consensus 143 ---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 143 ---NFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp ---HHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ---HHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 1222222221100 0011256888899999999988777654
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.3e-14 Score=111.78 Aligned_cols=156 Identities=18% Similarity=0.115 Sum_probs=88.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee-EeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||++.+++... .. .. .|+.. ....+.. ++ ..+.++||+|... .
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~-~~-~~---~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~--------~---- 67 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSY-QV-LE---KTESEQYKKEMLV-DGQTHLVLIREEAGAPD--------A---- 67 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCC-CC-CS---SCSSSEEEEEEEE-TTEEEEEEEEECSSSCC--------H----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CC-cC---CCcceeEEEEEEE-CCEEEEEEEEECCCCch--------h----
Confidence 458999999999999999999997653 11 11 11111 1222233 33 3578899999653 0
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhcc-ccccceEEEEeCCCCCCc-chhhHHHHhccCCCchHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK-NVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKE 171 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~-~~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~~ 171 (363)
. .+.++|++++|+|+++..+-... .++.++...... ....|+++|.||+|+... .+....+. ...
T Consensus 68 ~----~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~--------~~~ 135 (178)
T 2iwr_A 68 K----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR--------ARA 135 (178)
T ss_dssp H----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHH--------HHH
T ss_pred H----HHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHH--------HHH
Confidence 1 12347999999998733332222 223344443221 012389999999998421 00110111 222
Q ss_pred HHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+....+...++ ..|++.+.++.++++.+...+
T Consensus 136 ~~~~~~~~~~~-----~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 136 LXADMKRCSYY-----ETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp HHHHHSSEEEE-----EEBTTTTBTHHHHHHHHHHHH
T ss_pred HHHhhcCCeEE-----EEeccccCCHHHHHHHHHHHH
Confidence 22222222222 567788899999998876654
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-13 Score=112.77 Aligned_cols=157 Identities=15% Similarity=0.103 Sum_probs=90.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee--EeEEEEeeC-----------CcEEEEEeCCCCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLKD-----------GQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~~-----------~~~~~l~DtpG~~~~~~~ 85 (363)
..+|+|+|..|+|||||+|.|++... . .....|+.. ....+.+.. ...+.|+||||..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~-~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----- 95 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKF-N---PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE----- 95 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCC-C---CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-----
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC-C---cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH-----
Confidence 37999999999999999999997643 1 111112211 111222211 3568899999932
Q ss_pred hHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHH-HHHHHHhccc--cccceEEEEeCCCCCCcchhhHHHHhc
Q 017924 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV-HRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l-~~~~~~~~~~--~~~~~i~v~n~~D~~~~~~~~l~~~~~ 162 (363)
.+.......+..+|++++|+|+++.. ....+ .++..+.... ...++++|+||+|+........+ .
T Consensus 96 ------~~~~~~~~~~~~~d~iilV~D~~~~~---s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~-~-- 163 (217)
T 2f7s_A 96 ------RFRSLTTAFFRDAMGFLLMFDLTSQQ---SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER-Q-- 163 (217)
T ss_dssp ------HHHHHHHHHHTTCCEEEEEEETTCHH---HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH-H--
T ss_pred ------hHHhHHHHHhcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH-H--
Confidence 23333334456789999999987321 21222 2222222110 22489999999998643101111 1
Q ss_pred cCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+....+..++ ..|+..+.++.++++.|...+
T Consensus 164 ------~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 164 ------ARELADKYGIPYF------ETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp ------HHHHHHHTTCCEE------EEBTTTTBTHHHHHHHHHHHH
T ss_pred ------HHHHHHHCCCcEE------EEECCCCCCHHHHHHHHHHHH
Confidence 2223333343333 457778889999998877654
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-13 Score=121.39 Aligned_cols=166 Identities=15% Similarity=0.219 Sum_probs=94.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccccccc-ccCCCCCceeeEeEEEEee--------------C--------CcEEEEE
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVLK--------------D--------GQVVNVI 74 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~l~ 74 (363)
...+|+++|+.++|||||++.|+|...... .....+.|+...+....+. . ...++++
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 458999999999999999999997642111 1111233443332222110 0 1578999
Q ss_pred eCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCC-CHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcc
Q 017924 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (363)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~ 153 (363)
||||. ..+...+......+|++++|+|+++.. .......+..+.. ++. .++++++||+|+...
T Consensus 87 DtPGh-----------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~~- 150 (408)
T 1s0u_A 87 DSPGH-----------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVDE- 150 (408)
T ss_dssp ECSSH-----------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSCT-
T ss_pred ECCCH-----------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCCH-
Confidence 99993 234444555566789999999998554 4555555554433 332 278999999999765
Q ss_pred hhhHHHHhccCCCchHHHHHHhcC-CceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 154 EKTLEDFLGHECPKPLKEILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+...... +.+++.... ... .....|+..+.++.+|++.|...+.
T Consensus 151 -~~~~~~~~~-----i~~~l~~~~~~~~----~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 151 -KQAEENYEQ-----IKEFVKGTIAENA----PIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp -TTTTTHHHH-----HHHHHTTSTTTTC----CEEEC------CHHHHHHHHHHHSC
T ss_pred -HHHHHHHHH-----HHHHHhhcCCCCC----eEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 221111122 233333211 111 1125688889999999999887654
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-14 Score=116.23 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=93.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE--eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
..+|+|||..|+|||||++.+++.. |... ...|+... ...... ++ ..+.||||+|.....
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~-f~~~---~~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~~----------- 76 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDS-FDNT---YQATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERFR----------- 76 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC-CC-------------CEEEEEEC-SSCEEEEEEECCSCTTTCG-----------
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCC-CCCC---cCCccceEEEEEEEEe-cceEEEEEEEECCCchhhh-----------
Confidence 4799999999999999999988443 2221 11222211 222222 33 467799999965431
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
......+.+.+++++|+|++++-+-.. ..++..+....+.++ +++||.||+|+........++ ...+.
T Consensus 77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~--piilVgNK~Dl~~~r~V~~~e---------~~~~a 145 (216)
T 4dkx_A 77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADKRQVSIEE---------GERKA 145 (216)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC--eEEEEeeccchHhcCcccHHH---------HhhHH
Confidence 112233467899999999883333222 345555655555544 899999999986431011111 22233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+..|+ .+|++++.++.++++.|.+.+
T Consensus 146 ~~~~~~~~------e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 146 KELNVMFI------ETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp HHHTCEEE------EEBTTTTBSHHHHHHHHHHHC
T ss_pred HHhCCeeE------EEeCCCCcCHHHHHHHHHHHH
Confidence 33344433 578899999999998776554
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.7e-14 Score=125.62 Aligned_cols=167 Identities=15% Similarity=0.111 Sum_probs=98.7
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcccccccc-----------------------------cCCCCCceeeEeEEEEe
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTVL 65 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~ 65 (363)
+.....+|+++|+.|+|||||++.|++....... ....++|++.....+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 3345689999999999999999999654210000 00123566555555555
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCC-------HHHHHHHHHHHHHhcccccc
Q 017924 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS-------QEEETAVHRLPNLFGKNVFD 138 (363)
Q Consensus 66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~ 138 (363)
.+..++|+||||..+ +...+..+...+|++++|+|++.... ...+..+..+.. .+. .
T Consensus 93 -~~~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v---~ 156 (439)
T 3j2k_7 93 -EKKHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGV---K 156 (439)
T ss_pred -CCeEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCC---C
Confidence 677999999999543 33333344557899999999974432 234444444333 232 1
Q ss_pred ceEEEEeCCCCCCc--chhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHH
Q 017924 139 YMIVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS 202 (363)
Q Consensus 139 ~~i~v~n~~D~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 202 (363)
++++++||+|+... +...+++.... +..++..++............|+..+.++.++.+
T Consensus 157 ~iIvviNK~Dl~~~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 157 HLIVLINKMDDPTVNWSNERYEECKEK-----LVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eEEEEeecCCCcccchHHHHHHHHHHH-----HHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 48999999998643 11233333333 4445444432100000123567888888887554
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.9e-14 Score=114.51 Aligned_cols=166 Identities=19% Similarity=0.124 Sum_probs=94.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||++.+++... .. ....|+... ...+.. ++ ..+.++||||......
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 72 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-PT---DYIPTVFDNFSANVAV-DGQIVNLGLWDTAGQEDYSR---------- 72 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CS---SCCCSSCCCEEEEEEC-SSCEEEEEEECCCCCCCCCC----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-Cc---cCCCccceeEEEEEEE-CCEEEEEEEEECCCcHHHHH----------
Confidence 447999999999999999999986542 11 111122111 112223 33 4788999999765321
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHh-ccCCCchHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL-GHECPKPLKE 171 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~-~~~~~~~~~~ 171 (363)
.....+...|++++|+|+++.-+-... .++..+..... . .|+++|+||+|+... ....... ..........
T Consensus 73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~ 146 (212)
T 2j0v_A 73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-N--VPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEE 146 (212)
T ss_dssp ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHH
T ss_pred -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeCHHhhhC--ccccccccCCCCHHHHHH
Confidence 122345678999999998733222221 34444444322 2 389999999998654 2110000 0000001223
Q ss_pred HHHhcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 172 ILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+....+. .++ ..|+..+.++.++++.+...+..
T Consensus 147 ~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 147 LRKQIGAAAYI------ECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp HHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHcCCceEE------EccCCCCCCHHHHHHHHHHHHhh
Confidence 3333343 333 56778889999999988776643
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-13 Score=110.84 Aligned_cols=167 Identities=14% Similarity=0.102 Sum_probs=94.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||++.|++... . .....|+.... ..+... ....+.++||+|.... ..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~---~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~ 91 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-P---ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY-----------DN 91 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-C---SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG-----------TT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-C---CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh-----------hH
Confidence 457999999999999999999997643 1 11111222222 122221 1346889999996432 11
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc---CCC-chH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KPL 169 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~---~~~-~~~ 169 (363)
.....+..+|++++|+|+++..+-.. ..++..+...+. . .++++|.||+|+.... ..+.++... ... +..
T Consensus 92 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 167 (205)
T 1gwn_A 92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQG 167 (205)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEechhhccch-hhhhhhcccccCCCCHHHH
Confidence 22334568899999999873322222 233344444332 2 3899999999987431 111111110 000 112
Q ss_pred HHHHHhcCCceEEecCCCccccc-chhHHHHHHHHHHHHH
Q 017924 170 KEILQLCDNRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVI 208 (363)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~ 208 (363)
..+....+...++ .+|++ .+.++.++++.+.+.+
T Consensus 168 ~~~~~~~~~~~~~-----e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 168 ANMAKQIGAATYI-----ECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHHHTCSEEE-----ECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEE-----EeeeccCCcCHHHHHHHHHHHH
Confidence 3334343422222 46776 5789999998876654
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-14 Score=123.76 Aligned_cols=169 Identities=18% Similarity=0.117 Sum_probs=99.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|||.+|||||||||+|++...... .. ...|....+..+.+.++..++++||||+.........+...+.+.+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~-~~-~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i--- 234 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIA-DY-HFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI--- 234 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEES-ST-TSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH---
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccc-cC-CccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH---
Confidence 689999999999999999997653211 11 1123333444445533478999999996431111111223333332
Q ss_pred CCCccEEEEEeecCC---CCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 101 KDGIHAFLVVFSVTN---RFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~---~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.+++++++|+|+++ +-...+. .++..+..+...-...|+++|+||+|+... .. . +..+...+
T Consensus 235 -~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e---~--------~~~l~~~l 300 (342)
T 1lnz_A 235 -ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AE---N--------LEAFKEKL 300 (342)
T ss_dssp -HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HH---H--------HHHHHHHC
T ss_pred -HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HH---H--------HHHHHHHh
Confidence 34699999999973 2222332 233344433211123489999999998754 21 1 11222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHHcC
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 212 (363)
... ......|+..+.++.+|++.|...+....
T Consensus 301 ~~~----~~v~~iSA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 301 TDD----YPVFPISAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp CSC----CCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred hcC----CCEEEEECCCCcCHHHHHHHHHHHHhhCc
Confidence 211 12346788889999999999998886543
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.2e-14 Score=126.38 Aligned_cols=168 Identities=15% Similarity=0.122 Sum_probs=99.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccccccc-----c--------cCCCCCceeeEeEEEEe----eCCcEEEEEeCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA-----S--------AGSSGVTKTCEMKTTVL----KDGQVVNVIDTPGL 79 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~-----~--------~~~~~~t~~~~~~~~~~----~~~~~~~l~DtpG~ 79 (363)
.+..+|+++|..|+|||||+|+|+|...... . ......+.........+ .....++++||||.
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 4458999999999999999999998532000 0 00000000000000000 01257889999995
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCC-CHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHH
Q 017924 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE 158 (363)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~ 158 (363)
.+ +...+......+|++++|+|+++.. .......+..+..+ +. .++++++||+|+... ..+.
T Consensus 86 ~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~~--~~~~ 148 (403)
T 3sjy_A 86 EV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVSK--EEAL 148 (403)
T ss_dssp GG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH--HHHH
T ss_pred HH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccch--HHHH
Confidence 43 2222223345789999999998655 44555555554443 32 279999999999865 4444
Q ss_pred HHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 159 DFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..... +.+.+........ .....|+..+.++.+|++.|...+.
T Consensus 149 ~~~~~-----i~~~l~~~~~~~~---~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 149 SQYRQ-----IKQFTKGTWAENV---PIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHH-----HHHHHTTSTTTTC---CEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHH-----HHHHHHhhCCCCC---EEEEEECCCCcChHHHHHHHHHhCC
Confidence 44444 4444433221110 1235688889999999999887653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=121.02 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=68.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCC-----CCCceeeEeEEEEee-CC--cEEEEEeCCCCCCCCCC------
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAG------ 85 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~------ 85 (363)
.+|+|||.+|+|||||+|+|+|...|...... ...|+.......... ++ ..++++||||+++....
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~ 117 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 117 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHH
Confidence 68999999999999999999887665432211 011222222222111 23 26889999999654221
Q ss_pred -hHHHHHHHHHHHhc---------cCCCccEEEEEeec-CCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcch
Q 017924 86 -SEFVGKEIVKCLGM---------AKDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE 154 (363)
Q Consensus 86 -~~~~~~~~~~~~~~---------~~~~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~ 154 (363)
...+...+..++.. ...++|+++|+++. .+.+...+..++..+ ... .|+++|+||+|....
T Consensus 118 i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~--~piIlV~NK~Dl~~~-- 189 (361)
T 2qag_A 118 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNK--VNIVPVIAKADTLTL-- 189 (361)
T ss_dssp THHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS---SCEEEEEECCSSSCH--
T ss_pred HHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccC--CCEEEEEECCCCCCH--
Confidence 11122222232211 12356788888875 456776665444433 223 389999999999865
Q ss_pred hhHHHH
Q 017924 155 KTLEDF 160 (363)
Q Consensus 155 ~~l~~~ 160 (363)
..+..+
T Consensus 190 ~ev~~~ 195 (361)
T 2qag_A 190 KERERL 195 (361)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-13 Score=116.82 Aligned_cols=174 Identities=13% Similarity=0.114 Sum_probs=91.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccc---cCCCCC----------------------ceee--------------
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS---AGSSGV----------------------TKTC-------------- 58 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~---~~~~~~----------------------t~~~-------------- 58 (363)
...+|+|+|.+|+|||||+|+|+|....... .+..+. ++..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4479999999999999999999988642111 010110 0000
Q ss_pred ----------EeEEEEeeCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHhccCCCccEE-EEEeecCCCCCHHHHHHH
Q 017924 59 ----------EMKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKDGIHAF-LVVFSVTNRFSQEEETAV 125 (363)
Q Consensus 59 ----------~~~~~~~~~~~~~~l~DtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-l~v~~~~~~~~~~~~~~l 125 (363)
........+...++|+||||+..... ....+...+...+..+....+.+ ++|+|++..++..+. +
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~--~ 182 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--L 182 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH--H
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH--H
Confidence 00001111246789999999875321 01111222333333333345555 478888755554442 1
Q ss_pred HHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 126 ~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
..+..+... ..++++|+||+|+.... ....+.+.. .+..+...+. .....|+..+.++.++++.+.
T Consensus 183 ~~~~~~~~~--~~~~i~V~NK~Dl~~~~-~~~~~~~~~--------~~~~~~~~~~---~v~~~SA~~~~gi~~l~~~l~ 248 (299)
T 2aka_B 183 KIAKEVDPQ--GQRTIGVITKLDLMDEG-TDARDVLEN--------KLLPLRRGYI---GVVNRSQKDIDGKKDITAALA 248 (299)
T ss_dssp HHHHHHCTT--CSSEEEEEECGGGSCTT-CCCHHHHTT--------CSSCCTTCEE---ECCCCCCBCTTSCBCHHHHHH
T ss_pred HHHHHhCCC--CCeEEEEEEccccCCCC-chHHHHHhC--------CcCcCCCCcE---EEECCChhhccccccHHHHHH
Confidence 222222211 23899999999987541 112222221 0000011122 234668888889888888776
Q ss_pred HH
Q 017924 206 SV 207 (363)
Q Consensus 206 ~~ 207 (363)
..
T Consensus 249 ~~ 250 (299)
T 2aka_B 249 AE 250 (299)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9e-14 Score=127.67 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=93.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc-cc----------------------------cccCCCCCceeeEeEEEEeeCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA-FK----------------------------ASAGSSGVTKTCEMKTTVLKDG 68 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~-~~----------------------------~~~~~~~~t~~~~~~~~~~~~~ 68 (363)
+..+|+|+|..|+|||||++.|++... +. ......++|.......+.. .+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CC
Confidence 457999999999999999999976511 00 0001123455555555555 67
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-------CCHHHHHHHHHHHHHhccccccceE
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMI 141 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~i 141 (363)
..+.|+||||..+ +...+..++..+|++++|+|+++. +.......+..+.. .+. .+++
T Consensus 111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iI 175 (483)
T 3p26_A 111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLI 175 (483)
T ss_dssp CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEE
Confidence 8899999999754 222233344578999999999743 33344444443333 332 2699
Q ss_pred EEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC---ceEEecCCCcccccchhHHHH
Q 017924 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQ 199 (363)
Q Consensus 142 ~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 199 (363)
+|+||+|+...+...+++.... +..++...+. ...+ ...|+..+.++.+
T Consensus 176 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~----i~iSA~~g~gi~e 227 (483)
T 3p26_A 176 IAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINW----VPISGFSGEGVYK 227 (483)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGGGEEE----EECCSSSCTTSSS
T ss_pred EEEECcCcccchHHHHHHHHHH-----HHHHHHHcCCCcccceE----EEEeeecCCCccc
Confidence 9999999876322444444444 5555544432 1111 2456666666654
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-13 Score=127.24 Aligned_cols=165 Identities=14% Similarity=0.178 Sum_probs=96.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce-------------------------------------------
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK------------------------------------------- 56 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~------------------------------------------- 56 (363)
.+|+|||..++|||||+|+|+|...+..+. +.+|.
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~LP~g~--g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDFLPRGS--GIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCCSCCSS--SCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccCcCC--ccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 599999999999999999999976533221 11111
Q ss_pred --------eeEeEEEEeeCCcEEEEEeCCCCCCCCCC--h----HHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHH
Q 017924 57 --------TCEMKTTVLKDGQVVNVIDTPGLFDLSAG--S----EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE 122 (363)
Q Consensus 57 --------~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~ 122 (363)
......+...+...++|+||||++..... . ..+...+..++. ...|++++|+|+++.+...+.
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~---~~aDlIL~VVDAs~~~~~~d~ 206 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT---KENCLILAVSPANSDLANSDA 206 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT---STTEEEEEEEETTSCSSSCHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh---cCCcEEEEEEcCCCCcchhHH
Confidence 00011112223456889999999873211 1 223333333332 577999999999856665554
Q ss_pred -HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHH
Q 017924 123 -TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201 (363)
Q Consensus 123 -~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 201 (363)
..+..+.. . ..++++|+||+|....... ...++.. ...... .-|......|+.++.++.+|+
T Consensus 207 l~ll~~L~~---~--g~pvIlVlNKiDlv~~~~~-~~~il~~----------~~~~l~-lg~~~VV~iSA~~G~GvdeL~ 269 (772)
T 3zvr_A 207 LKIAKEVDP---Q--GQRTIGVITKLDLMDEGTD-ARDVLEN----------KLLPLR-RGYIGVVNRSQKDIDGKKDIT 269 (772)
T ss_dssp HHHHHHHCT---T--CSSEEEEEECTTSSCTTCC-SHHHHTT----------CSSCCS-SCEEECCCCCCEESSSSEEHH
T ss_pred HHHHHHHHh---c--CCCEEEEEeCcccCCcchh-hHHHHHH----------Hhhhhh-ccCCceEEecccccccchhHH
Confidence 34433332 1 2389999999999865211 1111111 000000 012234567888899999998
Q ss_pred HHHHH
Q 017924 202 SLVNS 206 (363)
Q Consensus 202 ~~l~~ 206 (363)
+.+..
T Consensus 270 eaI~~ 274 (772)
T 3zvr_A 270 AALAA 274 (772)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88876
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-13 Score=109.71 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=91.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|+|..|+|||||++.|++... .. ... .|....+ ..+.. ++ ..+.++||||... .. ..
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~-~~-~~~--~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----~~---~~ 92 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRF-IW-EYD--PTLESTYRHQATI-DDEVVSMEILDTAGQED-----TI---QR 92 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCC-CS-CCC--TTCCEEEEEEEEE-TTEEEEEEEEECCCCCC-----CH---HH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC-Cc-ccC--CCCCceEEEEEEE-CCEEEEEEEEECCCCCc-----cc---ch
Confidence 4568999999999999999999997653 11 111 1222222 22233 33 4688999999765 11 11
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
..+ +...|++++|+|+++.-+-.. ..++..+...... ...|+++|.||+|+........++ ...+
T Consensus 93 ~~~----~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~~---------~~~~ 158 (196)
T 2atv_A 93 EGH----MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHSRQVSTEE---------GEKL 158 (196)
T ss_dssp HHH----HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGGCCSCHHH---------HHHH
T ss_pred hhh----hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccccccCHHH---------HHHH
Confidence 111 224699999999873222211 2234444443221 123899999999986531011111 1222
Q ss_pred HHhcCCceEEecCCCcccccchh-HHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVI 208 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~ 208 (363)
....+..++ ..|+..+. ++.++++.|...+
T Consensus 159 ~~~~~~~~~------~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 159 ATELACAFY------ECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp HHHHTSEEE------ECCTTTCTTCHHHHHHHHHHHH
T ss_pred HHHhCCeEE------EECCCcCCcCHHHHHHHHHHHH
Confidence 233333333 45777788 9999998876655
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-13 Score=118.80 Aligned_cols=171 Identities=13% Similarity=0.138 Sum_probs=89.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccc---cCCCCC----------------------ceee----------------
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS---AGSSGV----------------------TKTC---------------- 58 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~---~~~~~~----------------------t~~~---------------- 58 (363)
.+|+|||..|+|||||+|+|+|....... .+..+. ++..
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~ 111 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 111 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhccc
Confidence 69999999999999999999997642111 011010 0000
Q ss_pred --------EeEEEEeeCCcEEEEEeCCCCCCCCCC--hHHHHHHHHHHHhccC-CCccEEEEEeecCCCCCHHHHHHHHH
Q 017924 59 --------EMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAK-DGIHAFLVVFSVTNRFSQEEETAVHR 127 (363)
Q Consensus 59 --------~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~l~~ 127 (363)
....+...+...++||||||+...... ...+.+.+...+..+. ...+++++|++++..+...+. +..
T Consensus 112 ~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~~i 189 (353)
T 2x2e_A 112 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--LKV 189 (353)
T ss_dssp TTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--HHH
T ss_pred CCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--HHH
Confidence 000011112467899999998753211 1112222222222222 344677777777644443332 223
Q ss_pred HHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 128 LPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 128 ~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
+..+... ..++++|+||+|+.... ....+++... .......++ .....|+..+.++.++++.+..
T Consensus 190 ~~~~~~~--~~~~i~V~NK~Dl~~~~-~~~~~~~~~~--------~~~l~~~~~---~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEVDPQ--GQRTIGVITKLDLMDEG-TDARDVLENK--------LLPLRRGYI---GVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHCTT--CTTEEEEEECGGGSCTT-CCCHHHHTTC--------SSCCTTCEE---ECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHhCcC--CCceEEEeccccccCcc-hhHHHHHhCC--------cccccCCce---EEEeCCcccccccccHHHHHHH
Confidence 3333222 23899999999997541 1122222220 000011122 2345688888888888887765
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-13 Score=116.60 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=77.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc-ccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+.+|+|+|..|+|||||+|.|++.. .+.+ . ....|+........+.++..+.++||||.... ....+....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~-~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~ 74 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-R-RLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQK 74 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGG-G-GCCCCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccc-c-CcCCccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHH
Confidence 4799999999999999999988763 2211 1 12234444444444435678899999995421 000111222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
...+.++|++++|+|+++.-+..+. .+..++..+.......|+++|+||+|+...
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 2334578999999999854443433 233334333211112389999999999863
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-13 Score=111.88 Aligned_cols=164 Identities=21% Similarity=0.152 Sum_probs=92.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc-cccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|||.+|+|||||++.|+|... +...+. .+.......+.+ ++ ..+.++||+|..... ..+
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~-------~~~ 89 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPE---NPEDTYERRIMV-DKEEVTLVVYDIWEQGDAG-------GWL 89 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTT---SCTTEEEEEEEE-TTEEEEEEEECCCCCSGGG-------HHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCC---cccceEEEEEEE-CCEEEEEEEEecCCCccch-------hhh
Confidence 4457999999999999999999986532 211111 121222222333 44 356788999975421 112
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
... .+...+++++|+|++++-+-. ...++..+..... ....|+++|.||+|+........++ ...+
T Consensus 90 ~~~---~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~---------~~~~ 156 (195)
T 3cbq_A 90 RDH---CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEE---------GRHL 156 (195)
T ss_dssp HHH---HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCSCHHH---------HHHH
T ss_pred HHH---hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCcCHHH---------HHHH
Confidence 221 123579999999987332211 1233333433321 1123899999999987431111111 2223
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
....+..++ ..|++.+.++.++++.+...+..
T Consensus 157 a~~~~~~~~------e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 157 AGTLSCKHI------ETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp HHHTTCEEE------EEBTTTTBSHHHHHHHHHHHHHT
T ss_pred HHHhCCEEE------EEcCCCCCCHHHHHHHHHHHHHH
Confidence 333333332 56788889999999988776643
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=124.85 Aligned_cols=159 Identities=11% Similarity=0.100 Sum_probs=95.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc--ccc------------ccC-----------------CCCCceeeEeEEEEe
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA--FKA------------SAG-----------------SSGVTKTCEMKTTVL 65 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~--~~~------------~~~-----------------~~~~t~~~~~~~~~~ 65 (363)
....+|+++|+.|+|||||++.|++... +.. +.. ..++|+...+..+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3457999999999999999999986531 000 000 012344444444444
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEe
Q 017924 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (363)
Q Consensus 66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n 145 (363)
.+..++++||||..+. ...+. .....+|++++|+|+++.........+..+.. .+. .++++|+|
T Consensus 102 -~~~~~~iiDtpGh~~f-------~~~~~----~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~~---~~iIvviN 165 (434)
T 1zun_B 102 -AKRKFIIADTPGHEQY-------TRNMA----TGASTCDLAIILVDARYGVQTQTRRHSYIASL-LGI---KHIVVAIN 165 (434)
T ss_dssp -SSEEEEEEECCCSGGG-------HHHHH----HHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC---CEEEEEEE
T ss_pred -CCceEEEEECCChHHH-------HHHHH----HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEE
Confidence 5678999999996542 12222 23457899999999986666666666655443 232 26899999
Q ss_pred CCCCCCcchhhHHHHhccCCCchHHHHHHhcC--CceEEecCCCcccccchhHHHH
Q 017924 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCD--NRCVLFDNKTKDEAKGTEQVRQ 199 (363)
Q Consensus 146 ~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 199 (363)
|+|+...+...++..... +..++..++ ..... ....|++.+.++.+
T Consensus 166 K~Dl~~~~~~~~~~i~~~-----~~~~~~~~g~~~~~~~---~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 166 KMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMA---FVPMSALKGDNVVN 213 (434)
T ss_dssp CTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEE---EEECCTTTCTTTSS
T ss_pred cCcCCcccHHHHHHHHHH-----HHHHHHHhCCCccCce---EEEEeccCCCCccc
Confidence 999975322334434444 555655555 11111 12456666666665
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-14 Score=119.75 Aligned_cols=161 Identities=16% Similarity=0.062 Sum_probs=93.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhh-cccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSIL-GRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~-g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||+|.++ |...-...++.+ .+. ....+... ....+.++||||......
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~-~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------- 79 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG-VEV--HPLVFHTNRGPIKFNVWDTAGQEKFGG---------- 79 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTT-EEE--EEEEEEETTEEEEEEEEEECSGGGTSC----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc-eeE--EEEEEEECCEEEEEEEEeCCChHHHhH----------
Confidence 345799999999999999999954 332211111111 122 22222221 235788999999644221
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
.....+...|++++|+|+++..+... ..++..+...+. . .++++|+||+|+... .... .... +.
T Consensus 80 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~--~~~~-~~~~--------~~ 144 (221)
T 3gj0_A 80 -LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDIKDR--KVKA-KSIV--------FH 144 (221)
T ss_dssp -CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-T--CCEEEEEECTTSSSC--SSCG-GGCC--------HH
T ss_pred -HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECCccccc--cccH-HHHH--------HH
Confidence 11122346899999999883322222 234444444432 2 389999999998754 2211 1111 22
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
...+..++ ..|++.+.++.++++.|...+...
T Consensus 145 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 145 RKKNLQYY------DISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp HHHTCEEE------ECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHhC
Confidence 23333333 467888999999999988877543
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-14 Score=127.58 Aligned_cols=166 Identities=19% Similarity=0.163 Sum_probs=101.8
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.....+|+|+|..|+|||||+|.|++......... .+.|+......+.+.....++++||||+.+.........+....
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~-~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDY-AGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCC-CCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence 34557999999999999999999998764222122 22344444555555233489999999998754322111112222
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.+..+|++++|+|+ .....+..++..+... + .++++|+||+|+... ... +... .+...
T Consensus 110 ----~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-~----~piIvV~NK~Dl~~~--~~~-~~~~--------~l~~~ 167 (423)
T 3qq5_A 110 ----VFYRADCGILVTDS--APTPYEDDVVNLFKEM-E----IPFVVVVNKIDVLGE--KAE-ELKG--------LYESR 167 (423)
T ss_dssp ----HHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-T----CCEEEECCCCTTTTC--CCT-HHHH--------HSSCC
T ss_pred ----HHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-C----CCEEEEEeCcCCCCc--cHH-HHHH--------HHHHH
Confidence 23468999999998 4556667777776654 2 389999999998865 221 1111 11111
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
++. .....|++.+.++.++++.|.+.+..
T Consensus 168 ~g~------~v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 168 YEA------KVLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp TTC------CCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred cCC------CEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 121 33467888899999999999887743
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=109.66 Aligned_cols=165 Identities=16% Similarity=0.147 Sum_probs=84.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc-ccccccCCCCCceeeEeEEEEe------eCCcEEEEEeCCCCCCCCCChHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVL------KDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~-~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~l~DtpG~~~~~~~~~~~~~~ 92 (363)
.+|+|+|.+|||||||++.|+|.. .|.. ... .|+...+..... .....+.++||+|...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~-~~~--~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------- 68 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLG-MQS--ATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE----------- 68 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC--------------CSEEEEEEEC---------CEEEEEEECSHHH-----------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCC-Ccc--eeccEEeEEeeeccccCCCCceEEEEEecCCCHH-----------
Confidence 689999999999999999999853 2211 111 122122211111 1245788999999432
Q ss_pred HHHHHhccCCCccEEEEEeecCCCCC-HH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHH
Q 017924 93 IVKCLGMAKDGIHAFLVVFSVTNRFS-QE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (363)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~-~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~ 170 (363)
+.......+.+.+++++|+|+++..+ -. ...++..+..... . .++++|.||+|+... ..+...... ...
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~----~~~ 139 (184)
T 2zej_A 69 FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-S--SPVILVGTHLDVSDE--KQRKACMSK----ITK 139 (184)
T ss_dssp HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-T--CEEEEEEECGGGCCH--HHHHHHHHH----HHH
T ss_pred HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-C--CcEEEEEECCCcccc--hhhHHHHHH----HHH
Confidence 11111122235688899999873321 11 1223333333221 2 388999999998754 222211111 011
Q ss_pred HHHHhcCCceEEecCCCcccccchh-HHHHHHHHHHHHHH
Q 017924 171 EILQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIV 209 (363)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~ 209 (363)
.+....+.... ......|++.+. ++.+|++.+.+.+.
T Consensus 140 ~~~~~~~~~~~--~~~~~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 140 ELLNKRGFPAI--RDYHFVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp HTTTCTTSCEE--EEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcch--hheEEEecccCchhHHHHHHHHHHHHh
Confidence 11111222200 011245777774 88888888766554
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.7e-13 Score=119.83 Aligned_cols=164 Identities=18% Similarity=0.204 Sum_probs=98.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc------ccc----c----cCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA------FKA----S----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~------~~~----~----~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (363)
..+|+++|+.|+|||||++.|++... |.. . ....+.|+......+.. .+..++|+||||..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~---- 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHA---- 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHH----
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChH----
Confidence 47999999999999999999987421 000 0 00123344433333333 56789999999943
Q ss_pred ChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccc-eEEEEeCCCCCCcchhhHHHHhcc
Q 017924 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
.+...+...+..+|++++|+|+++.........+..+.. .+- + +++++||+|+... ...++.....
T Consensus 78 -------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~v----p~iivviNK~Dl~~~-~~~~~~~~~~ 144 (397)
T 1d2e_A 78 -------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IGV----EHVVVYVNKADAVQD-SEMVELVELE 144 (397)
T ss_dssp -------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CCEEEEEECGGGCSC-HHHHHHHHHH
T ss_pred -------HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cCC----CeEEEEEECcccCCC-HHHHHHHHHH
Confidence 334444455678999999999986666666666655543 232 5 6789999998753 1233333333
Q ss_pred CCCchHHHHHHhcCC---ceEEecCCCcccccchh---------H-HHHHHHHHHHHHH
Q 017924 164 ECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTE---------Q-VRQLLSLVNSVIV 209 (363)
Q Consensus 164 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---------~-~~~l~~~l~~~~~ 209 (363)
+.+++..++. ...+ ...|+..+. + +.+|++.|...+.
T Consensus 145 -----~~~~l~~~~~~~~~~~~----i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 145 -----IRELLTEFGYKGEETPI----IVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp -----HHHHHHHTTSCTTTSCE----EECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred -----HHHHHHHcCCCcccCcE----EEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 4445554431 1111 134555443 3 6777777766543
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-13 Score=107.73 Aligned_cols=160 Identities=19% Similarity=0.114 Sum_probs=90.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|+|..|+|||||++.|++... .. ....|+...+ ..... ++ ..+.++||+|...... +
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~--------~ 85 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRF-IS---EYDPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRN--------C 85 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSC-CS---CCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CCC--------T
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCC-Cc---ccCCCccceeeEEEEE-CCEEEEEEEEECCCCCcchh--------H
Confidence 3457999999999999999999987653 21 1112222222 12222 33 4677999999764321 1
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhcc-ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~ 171 (363)
.. .+...|++++|+|+++.-+-.. ..++..+...... ....++++|.||+|+........++ ...
T Consensus 86 ~~----~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---------~~~ 152 (187)
T 3c5c_A 86 ER----YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAE---------GVA 152 (187)
T ss_dssp HH----HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHH---------HHH
T ss_pred HH----HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHH---------HHH
Confidence 11 2246799999999873322222 2234444443210 0123899999999986431011111 222
Q ss_pred HHHhcCCceEEecCCCcccc-cchhHHHHHHHHHHHHH
Q 017924 172 ILQLCDNRCVLFDNKTKDEA-KGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~ 208 (363)
+....+..++ ..|+ ..+.++.++++.+...+
T Consensus 153 ~~~~~~~~~~------e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 153 LAGRFGCLFF------EVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp HHHHHTCEEE------ECCSSSCSHHHHHHHHHHHHHH
T ss_pred HHHHcCCcEE------EEeecCccccHHHHHHHHHHHH
Confidence 3333343333 4677 68899999999876654
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.9e-14 Score=129.26 Aligned_cols=117 Identities=14% Similarity=0.177 Sum_probs=78.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccc----------------cc----cCCCCCceeeEeEEEEeeCCcEEEEEeCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFK----------------AS----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG 78 (363)
..+|+|+|+.|+|||||+|.|++..... .. ....++|+......+.+ .+..++|+||||
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTPG 91 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTPG 91 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECCC
Confidence 4799999999999999999996221100 00 00012333334444555 788999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+.. ... ..+...+|++++|+|+++.........+..+... + .|+++|+||+|+...
T Consensus 92 ~~df~-------~~~----~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-~----iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFT-------EDT----YRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-H----TPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCC-------HHH----HHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-T----CCEEEEEECTTSCCS
T ss_pred chhHH-------HHH----HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEeCCCCccc
Confidence 87642 122 2234467999999999877777777766655432 2 289999999999754
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-15 Score=122.83 Aligned_cols=159 Identities=19% Similarity=0.176 Sum_probs=86.1
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.++||||...... .
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~ 98 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTE--SYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT-----------I 98 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCC--HHHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCC-----------C
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHH-----------H
Confidence 4799999999999999999999765311 11111222233333334 44 4688999999654321 1
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+... ..++..+...... ..++++|+||+|+... ..+. ......+...
T Consensus 99 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~--~~v~-------~~~~~~~~~~ 167 (199)
T 3l0i_B 99 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK--KVVD-------YTTAKEFADS 167 (199)
T ss_dssp SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC----CCCC-------SCC-CHHHHT
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCcc--ccCC-------HHHHHHHHHH
Confidence 2234467899999999884332222 2233333322222 2389999999998644 1110 0012223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+.. ....|+..+.++.++++.|.+.+
T Consensus 168 ~~~~------~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 168 LGIP------FLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp TTCC------BCCCCC---HHHHHHHHHHTTTT
T ss_pred cCCe------EEEEECCCCCCHHHHHHHHHHHH
Confidence 3322 23568888999999998876544
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=123.21 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=77.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc-------ccccc--c------CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK-------AFKAS--A------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~-------~~~~~--~------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
....+|+++|+.|+|||||++.|++.. .|... . ...+.|.......+.. .+..++++||||..+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHAD 87 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHH
Confidence 455899999999999999999998741 11000 0 0122343333333333 567899999999764
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccc-eEEEEeCCCCCC
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLE 151 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~i~v~n~~D~~~ 151 (363)
. ...+......+|++++|+|+++.........+..+... +- + +++++||+|+..
T Consensus 88 f-----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~i----p~iivviNK~Dl~~ 142 (405)
T 2c78_A 88 Y-----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFMNKVDMVD 142 (405)
T ss_dssp G-----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TC----CCEEEEEECGGGCC
T ss_pred H-----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEECccccC
Confidence 2 12222334578999999999866666666666555442 32 5 789999999874
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.48 E-value=6.2e-13 Score=108.21 Aligned_cols=162 Identities=20% Similarity=0.185 Sum_probs=89.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc-cccccCCCCCceeeEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
..+|+|||.+|+|||||+|.++|... |...... ...+.....+.+ ++. .+.++||+|... ....
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~--~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~----------~~~~ 103 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV--LGEDTYERTLMV-DGESATIILLDMWENKG----------ENEW 103 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-----CCTTEEEEEEEE-TTEEEEEEEECCTTTTH----------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCc--cceeeEEEEEEE-CCeeeEEEEeecCCCcc----------hhhh
Confidence 37999999999999999999997532 2211111 111111222333 443 456899998432 0111
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.....+...+++++|++++++-+-... .++..+..... ....|+++|.||+|+........++ ...+..
T Consensus 104 l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~e---------~~~~a~ 173 (211)
T 2g3y_A 104 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSE---------GRACAV 173 (211)
T ss_dssp HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHHH---------HHHHHH
Confidence 123345678999999998733222221 22222322211 1123899999999986431011111 111222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+..++ .+|++.+.++.++++.+...+.
T Consensus 174 ~~~~~~~------e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 174 VFDCKFI------ETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp HHTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2232222 5688889999999998776553
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-13 Score=119.63 Aligned_cols=149 Identities=14% Similarity=0.178 Sum_probs=95.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+++|+.++|||||++.|+. .+.|+....+.+.+ .+..++++||||..+. ...+.. .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~----------~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-------~~~~~~----~ 80 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK----------KGTSSDITMYNNDK-EGRNMVFVDAHSYPKT-------LKSLIT----A 80 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE----------EEEESSSEEEEECS-SSSEEEEEECTTTTTC-------HHHHHH----H
T ss_pred EEEEECCCCCCHHHHHHHHHh----------CCEEEEeeEEEEec-CCeEEEEEECCChHHH-------HHHHHH----H
Confidence 899999999999999999981 12233344444444 5778999999997663 122222 2
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccce-EEEEe-CCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM-IVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-i~v~n-~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
...+|++++|+| +..........+..+.. .+. +. ++++| |+|+ .. ..++..... +.+++...+.
T Consensus 81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~-~~i----~~~ivvvNNK~Dl-~~--~~~~~~~~~-----i~~~l~~~~~ 146 (370)
T 2elf_A 81 LNISDIAVLCIP-PQGLDAHTGECIIALDL-LGF----KHGIIALTRSDST-HM--HAIDELKAK-----LKVITSGTVL 146 (370)
T ss_dssp HHTCSEEEEEEC-TTCCCHHHHHHHHHHHH-TTC----CEEEEEECCGGGS-CH--HHHHHHHHH-----HHHHTTTSTT
T ss_pred HHHCCEEEEEEc-CCCCcHHHHHHHHHHHH-cCC----CeEEEEEEeccCC-CH--HHHHHHHHH-----HHHHHHhcCC
Confidence 246799999999 75666666666555543 332 44 88888 9998 44 334433333 4444433321
Q ss_pred c-eEEecCCCc--ccccc---hhHHHHHHHHHHHHHH
Q 017924 179 R-CVLFDNKTK--DEAKG---TEQVRQLLSLVNSVIV 209 (363)
Q Consensus 179 ~-~~~~~~~~~--~~~~~---~~~~~~l~~~l~~~~~ 209 (363)
. .-+ .. .|+.. +.++.+|++.|...+.
T Consensus 147 ~~~~i----i~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 147 QDWEC----ISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp TTCEE----EECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred CceEE----EecccccccCcCCCCHHHHHHHHHhhcc
Confidence 1 111 23 67778 8899999887776654
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-13 Score=127.04 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=96.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccccccccc------------C-----------------CCCCceeeEeEEEEeeC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASA------------G-----------------SSGVTKTCEMKTTVLKD 67 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~------------~-----------------~~~~t~~~~~~~~~~~~ 67 (363)
....+|+|||..|+|||||+|.|++........ . ..++|+......+.. .
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-S
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-C
Confidence 446899999999999999999998663210000 0 023455555555555 6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-------CCHHHHHHHHHHHHHhccccccce
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYM 140 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~ 140 (363)
+..++|+||||..+ +...+..+...+|++++|+|+++. +.......+..+.. ++. .++
T Consensus 244 ~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi---~~i 308 (611)
T 3izq_1 244 RANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNL 308 (611)
T ss_dssp SCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC---CEE
T ss_pred CceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC---CeE
Confidence 78899999999754 344455566789999999998721 12233333333322 232 268
Q ss_pred EEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc---eEEecCCCcccccchhHHHHH
Q 017924 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR---CVLFDNKTKDEAKGTEQVRQL 200 (363)
Q Consensus 141 i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l 200 (363)
++|+||+|+.......+++.... +..++..++.. ..+ ...|+..+.++.++
T Consensus 309 IVVvNKiDl~~~~~~~~~ei~~~-----l~~~l~~~g~~~~~~~~----i~vSA~tG~gI~el 362 (611)
T 3izq_1 309 IIAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINW----VPISGFSGEGVYKI 362 (611)
T ss_dssp EEEEECTTTTTTCHHHHHHHHHH-----HHHHHHHHTCCGGGCEE----EECCTTTCTTTSSC
T ss_pred EEEEecccccchhHHHHHHHHHH-----HHHHHHhhcccccCccE----EeeecccCCCcccc
Confidence 99999999986322344444444 55555444421 111 24566667666544
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.3e-15 Score=135.08 Aligned_cols=163 Identities=13% Similarity=0.174 Sum_probs=102.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|+|+.|+|||||++.|++..... ...++.|.....+.+.+.++..++||||||..+.. .....
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~~~--~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~-----------~~~~~ 71 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQVAA--MEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS-----------AMRAR 71 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHHHH--SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT-----------TSBBS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccc--ccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH-----------HHHHH
Confidence 689999999999999999999765411 22334444444444444345678999999976532 22334
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
.+..+|++++|+|+++.........+..+... .. |+++++||+|+...+...+...+.. +......++..
T Consensus 72 ~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~---~v--PiIVViNKiDl~~~~~~~v~~~l~~-----~~~~~e~~~~~ 141 (537)
T 3izy_P 72 GTQVTDIVILVVAADDGVMKQTVESIQHAKDA---HV--PIVLAINKCDKAEADPEKVKKELLA-----YDVVCEDYGGD 141 (537)
T ss_dssp SSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT---TC--CEEECCBSGGGTTTSCCSSSSHHHH-----TTSCCCCSSSS
T ss_pred HHccCCEEEEEEECCCCccHHHHHHHHHHHHc---CC--cEEEEEecccccccchHHHHHHHHh-----hhhhHHhcCCC
Confidence 55678999999999867777666666555432 22 8999999999864311111111111 00001111111
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.. ....|+..+.++.+|++.+..++.
T Consensus 142 ~~----iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 142 VQ----AVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp EE----ECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred ce----EEEEECCCCCCchhHHHHHHHhhh
Confidence 11 236788899999999999887764
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.8e-13 Score=121.20 Aligned_cols=139 Identities=19% Similarity=0.254 Sum_probs=80.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc-ccccc----------------------------cCCCCCceeeEeEEEEeeCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK-AFKAS----------------------------AGSSGVTKTCEMKTTVLKDG 68 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~-~~~~~----------------------------~~~~~~t~~~~~~~~~~~~~ 68 (363)
+..+|+++|+.|+|||||++.|++.. .+... ....+.|+......+.+ .+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~ 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CC
Confidence 44799999999999999999998541 11000 00123454444444444 67
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-------CCHHHHHHHHHHHHHhccccccceE
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMI 141 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~i 141 (363)
..++++||||..+ +...+..++..+|++++|+|+++. +.......+..+.. .+. .+++
T Consensus 84 ~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~ii 148 (435)
T 1jny_A 84 YFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQLI 148 (435)
T ss_dssp CEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTCE
T ss_pred eEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEE
Confidence 7899999999765 222333456788999999999742 22222333332222 232 2688
Q ss_pred EEEeCCCCCCc--chhhHHHHhccCCCchHHHHHHhcC
Q 017924 142 VVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 142 ~v~n~~D~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
+++||+|+... +...++..... +..++...+
T Consensus 149 vviNK~Dl~~~~~~~~~~~~~~~~-----i~~~~~~~~ 181 (435)
T 1jny_A 149 VAVNKMDLTEPPYDEKRYKEIVDQ-----VSKFMRSYG 181 (435)
T ss_dssp EEEECGGGSSSTTCHHHHHHHHHH-----HHHHHHHTT
T ss_pred EEEEcccCCCccccHHHHHHHHHH-----HHHHHHHcC
Confidence 99999999762 11334444444 555655544
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.5e-13 Score=107.52 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=88.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|++|||||||++.|+|... .. ....+.+.......+.+ ++. .+.++||+|...... ..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~-~~-~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~-----------~~ 71 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEF-NL-ESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRR-----------IT 71 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC-CC----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTC-----------CC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC-CC-CCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhh-----------hh
Confidence 6999999999999999999998753 11 11111222222333344 443 567899999543211 11
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...+++++|+|+....+... ..++..+...... ..++++++||+|+........++ ...+....
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~~~~~~~~---------a~~l~~~~ 140 (199)
T 2f9l_A 72 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTDE---------ARAFAEKN 140 (199)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHH---------HHHHHHHT
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccCcCHHH---------HHHHHHHc
Confidence 112245789999999873322222 1233333332211 23889999999986431011111 22333333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+. .+++ +|+.++.++.++++.+...+.
T Consensus 141 ~~--~~~d----~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 141 NL--SFIE----TSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp TC--EEEE----CCTTTCTTHHHHHHHHHHHHH
T ss_pred CC--eEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 32 2222 577788899999988776653
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.8e-13 Score=111.24 Aligned_cols=151 Identities=19% Similarity=0.235 Sum_probs=86.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCC-----CCCce-eeEeEEEEeeC--CcEEEEEeCCCCCCCCCCh---HH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTK-TCEMKTTVLKD--GQVVNVIDTPGLFDLSAGS---EF 88 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~-----~~~t~-~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~---~~ 88 (363)
.+|+|+|+||||||||+|+|+|......+... ...+. ...+..+.... ...++++|++|++...... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 58999999999999999999987652211100 00011 11122221111 2367899999997643211 11
Q ss_pred HHH----HHHHHHh----------ccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcc
Q 017924 89 VGK----EIVKCLG----------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (363)
Q Consensus 89 ~~~----~~~~~~~----------~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~ 153 (363)
+.. .+..... ....+++++++++|.. +.++..+...++.+... .++++|+||+|.++.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~- 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL- 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH-
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH-
Confidence 222 1222111 1123458888888753 68888887666666542 289999999999977
Q ss_pred hhhHHHHhccCCCchHHHHHHhcCCceEEe
Q 017924 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLF 183 (363)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (363)
..+..+... +...+...+...+.+
T Consensus 156 -~e~~~~k~~-----i~~~l~~~~i~i~~~ 179 (270)
T 3sop_A 156 -EEKSEFKQR-----VRKELEVNGIEFYPQ 179 (270)
T ss_dssp -HHHHHHHHH-----HHHHHHHTTCCCSSC
T ss_pred -HHHHHHHHH-----HHHHHHHcCccccCC
Confidence 666666666 665566655554443
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-13 Score=109.13 Aligned_cols=130 Identities=11% Similarity=0.122 Sum_probs=71.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|..|+|||||+|.|++...... ......++.. .+ .+..+.++||||....... +...+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~-~~~~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~~~---~~~~~~~- 114 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAA-----DY-DGSGVTLVDFPGHVKLRYK---LSDYLKT- 114 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCC---HHHHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc-cccCCCceee-----ee-cCCeEEEEECCCCchHHHH---HHHHHHh-
Confidence 4457999999999999999999997653111 0011111111 11 4556779999998764321 1112222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc-----ccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK-----NVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
....+|++++|+|++ .-...-.....++...+.. ....|+++|+||+|+... ....+....
T Consensus 115 ---~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~ 180 (193)
T 2ged_A 115 ---RAKFVKGLIFMVDST-VDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA--RPPSKIKDA 180 (193)
T ss_dssp ---HGGGEEEEEEEEETT-CCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC--CCHHHHHHH
T ss_pred ---hcccCCEEEEEEECC-CCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC--CCHHHHHHH
Confidence 223579999999986 1111111222222222210 112389999999999866 444444333
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-14 Score=118.61 Aligned_cols=165 Identities=15% Similarity=0.016 Sum_probs=89.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||++.|++... .. ....|+...+ ..+... ....+.++||||.... .
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~---~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~ 92 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF-PG---EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-----------D 92 (204)
Confidence 4458999999999999999999986543 11 1111211111 111221 2345669999996542 1
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc-----CCCc
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH-----ECPK 167 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~-----~~~~ 167 (363)
......+..+|++++|+|+++..+..+. .++..+..... ..++++|+||+|+... ....+.+.. ....
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~v~~~ 167 (204)
T 3th5_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP 167 (204)
Confidence 2222334578999999998743332222 33444443322 2389999999998754 211111110 0000
Q ss_pred hHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
....+....+. ......|++.+.++.++++.|.+
T Consensus 168 ~~~~~~~~~~~-----~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 168 QGLAMAKEIGA-----VKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 01111111111 12235688888899888887654
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-12 Score=113.82 Aligned_cols=164 Identities=16% Similarity=0.105 Sum_probs=94.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
..+|+|+|..|+|||||++.+++... ......|+...+. .+.. ++. .+.++||||.... ..
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~ 218 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAF----PGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDY-----------DR 218 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC----CCSCCCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGG-----------TT
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCC----CcccCCcccceeEEEEEE-CCEEEEEEEEeCCCchhh-----------hH
Confidence 47999999999999999999986543 1111222222222 2233 444 4559999996542 12
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc---cCC-CchH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG---HEC-PKPL 169 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~---~~~-~~~~ 169 (363)
.....+..+|++++|+|+++..+..+. .++..+..... ..|+++|.||+|+.... ...+.+.. ... ....
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTCH-HHHHHHHHTTCCCCCHHHH
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccccc-chhhhccccccccccHHHH
Confidence 233445688999999998733332222 23344444332 23899999999986441 11111110 000 1112
Q ss_pred HHHHHhcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 170 KEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+....+. .++ .+|++.+.++.++++.+...+
T Consensus 295 ~~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 295 LAMAKEIGAVKYL------ECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEE------EecCCCCcCHHHHHHHHHHHH
Confidence 233333333 222 567888899999999887654
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=104.24 Aligned_cols=161 Identities=19% Similarity=0.201 Sum_probs=85.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc-cccccCCCCCceeeEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
..+|+|||.+|+|||||+|.++|... |..... +.+.+.....+.+ ++. .+.++||+|..... ..+.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~-------~~~~- 74 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE--VLGEDTYERTLMV-DGESATIILLDMWENKGEN-------EWLH- 74 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----G--GGCTTEEEEEEEE-TTEEEEEEEECCCCC-----------CTTG-
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc--ccceeEEEEEEEE-CCeEEEEEEEEeccCcchh-------hhHH-
Confidence 47999999999999999999997432 221111 1111111222333 443 45689999854310 0011
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
...+...+++++|++++++-+-... .++..+...... ...++++|.||+|+........++ ...+..
T Consensus 75 --~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~r~v~~~~---------~~~~a~ 142 (192)
T 2cjw_A 75 --DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRXREVSVSE---------GRAXAV 142 (192)
T ss_dssp --GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred --HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhccccccHHH---------HHHHHH
Confidence 1122346899999998733322222 233334433211 123899999999986430011111 111122
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+..++ .+|++.+.++.++++.+...+
T Consensus 143 ~~~~~~~------e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 143 VFDXKFI------ETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp HTTCEEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred HhCCceE------EeccccCCCHHHHHHHHHHHH
Confidence 2222232 568888999999998876654
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=118.63 Aligned_cols=139 Identities=16% Similarity=0.204 Sum_probs=83.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc-cccc-------------c---------------cCCCCCceeeEeEEEEeeCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK-AFKA-------------S---------------AGSSGVTKTCEMKTTVLKDG 68 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~-~~~~-------------~---------------~~~~~~t~~~~~~~~~~~~~ 68 (363)
...+|+++|+.|+|||||+|.|++.. .+.. + ....+.|+......+.. .+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence 34799999999999999999998642 1100 0 00123454444444444 67
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCH-------HHHHHHHHHHHHhccccccceE
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQ-------EEETAVHRLPNLFGKNVFDYMI 141 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~i 141 (363)
..++|+||||..+ +...+..++..+|++++|+|+++.... .....+..+.. .+- .+++
T Consensus 85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v---~~ii 149 (458)
T 1f60_A 85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQLI 149 (458)
T ss_dssp EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCC---CeEE
Confidence 7899999999653 333344456789999999998722111 22233332222 222 2488
Q ss_pred EEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 142 ~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
+++||+|+...+...++..... +..++...+
T Consensus 150 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g 180 (458)
T 1f60_A 150 VAVNKMDSVKWDESRFQEIVKE-----TSNFIKKVG 180 (458)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHT
T ss_pred EEEEccccccCCHHHHHHHHHH-----HHHHHHHcC
Confidence 9999999874222444444444 555555444
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=104.27 Aligned_cols=157 Identities=17% Similarity=0.165 Sum_probs=87.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcE--EEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|++|||||||++.|+|.... .....+++.......+.+ ++.. +.++||+|....... +
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~--~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~-----------~ 95 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFN--LESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAI-----------T 95 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCC--CSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCC-----------C
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhh-----------h
Confidence 69999999999999999999987541 111122222222333344 5543 456999997643211 1
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...+++++|+|.....+... ..++..+..... ...++++++||+|+......... . ...+....
T Consensus 96 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~~~~~----~-----a~~l~~~~ 164 (191)
T 1oix_A 96 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTD----E-----ARAFAEKN 164 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHH----H-----HHHHHHHT
T ss_pred HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHH----H-----HHHHHHHc
Confidence 112235678899999762211111 122333333221 12378999999998642101111 1 22333333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
+. .+++ +|+.++.++.++++.+.+.
T Consensus 165 ~~--~~ld----~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 165 GL--SFIE----TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp TC--EEEE----CCTTTCTTHHHHHHHHHHH
T ss_pred CC--EEEE----EeCCCCCCHHHHHHHHHHH
Confidence 32 2332 5777888999998887654
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=121.87 Aligned_cols=137 Identities=20% Similarity=0.312 Sum_probs=78.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee-EeEE---------------------------------
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKT--------------------------------- 62 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~-~~~~--------------------------------- 62 (363)
....+|+|+|..|+|||||+|+|+|........+....|... .+..
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 345799999999999999999999886421011111122110 0000
Q ss_pred ---EEeeCC---cEEEEEeCCCCCCCCCChHHHHHH--HHHHHhccCCCccEEEEEeecCC-CCCHHHHHHHHHHHHHhc
Q 017924 63 ---TVLKDG---QVVNVIDTPGLFDLSAGSEFVGKE--IVKCLGMAKDGIHAFLVVFSVTN-RFSQEEETAVHRLPNLFG 133 (363)
Q Consensus 63 ---~~~~~~---~~~~l~DtpG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~v~~~~~-~~~~~~~~~l~~~~~~~~ 133 (363)
..+ .+ ..++||||||+.+.... .+.+. +...+......+|++++|+|+++ .+...+..++..+...
T Consensus 143 ~~~~~~-~~~ll~~l~lIDTPG~~~~~~~--~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-- 217 (550)
T 2qpt_A 143 FMCAQL-PNQVLESISIIDTPGILSGAKQ--RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH-- 217 (550)
T ss_dssp EEEEEC-CCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--
T ss_pred ceEEec-cccccCCEEEEECcCCCCcchh--HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--
Confidence 000 00 35789999998762110 00000 11222222346799999999974 3566666665554321
Q ss_pred cccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 134 KNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 134 ~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
..++++|+||+|.... ..+......
T Consensus 218 ---~~pvilVlNK~Dl~~~--~el~~~~~~ 242 (550)
T 2qpt_A 218 ---EDKIRVVLNKADMVET--QQLMRVYGA 242 (550)
T ss_dssp ---GGGEEEEEECGGGSCH--HHHHHHHHH
T ss_pred ---CCCEEEEEECCCccCH--HHHHHHHHH
Confidence 1389999999999865 555554443
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-12 Score=119.65 Aligned_cols=114 Identities=17% Similarity=0.205 Sum_probs=74.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-----------------CCcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~l~DtpG~~~~ 82 (363)
.+|+|+|+.|+|||||++.|++..... ...++.|.........+. ....++|+||||..+.
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~--~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCcc--ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 699999999999999999999764311 111223322222222110 1125899999998664
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
.. ....+...+|++++|+|+++.+.......+..+... + .|+++++||+|+..
T Consensus 84 ~~-----------~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~-~----vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 84 TT-----------LRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-R----TPFVVAANKIDRIH 136 (594)
T ss_dssp TT-----------SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGST
T ss_pred HH-----------HHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc-C----CeEEEEeccccccc
Confidence 21 122345578999999999877777777777665542 2 28999999999864
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=121.60 Aligned_cols=161 Identities=19% Similarity=0.206 Sum_probs=91.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc-ccc-----c-------cCCCCCceeeEeEEEEee--C--CcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA-FKA-----S-------AGSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~-~~~-----~-------~~~~~~t~~~~~~~~~~~--~--~~~~~l~DtpG~~~~ 82 (363)
.+|+|+|+.|+|||||++.|++... +.. . ....++|+......+.|. + +..++|+||||..+.
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 6899999999999999999975321 000 0 001233444333444442 1 367899999997652
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~ 162 (363)
..++.+.+ ..+|++++|+|+++.........+..+... + .++++|+||+|+... . .+....
T Consensus 85 -------~~ev~~~l----~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-~----ipiIvViNKiDl~~a--~-~~~v~~ 145 (599)
T 3cb4_D 85 -------SYEVSRSL----AACEGALLVVDAGQGVEAQTLANCYTAMEM-D----LEVVPVLNKIDLPAA--D-PERVAE 145 (599)
T ss_dssp -------HHHHHHHH----HHCSEEEEEEETTTCCCTHHHHHHHHHHHT-T----CEEEEEEECTTSTTC--C-HHHHHH
T ss_pred -------HHHHHHHH----HHCCEEEEEEECCCCCCHHHHHHHHHHHHC-C----CCEEEeeeccCcccc--c-HHHHHH
Confidence 22333333 346999999999867666666655544432 2 289999999999754 1 222222
Q ss_pred cCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
. +... ++.. .......|+..+.++.+|++.+...+..
T Consensus 146 e-----i~~~---lg~~---~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 146 E-----IEDI---VGID---ATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp H-----HHHH---TCCC---CTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred H-----HHHH---hCCC---cceEEEeecccCCCchhHHHHHhhcCCC
Confidence 2 2222 2211 0123456888899999999988776643
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.9e-12 Score=107.74 Aligned_cols=170 Identities=16% Similarity=0.149 Sum_probs=77.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCC-----CCCceeeEeEEEEee-C--CcEEEEEeCCCCCCCCCC---hHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDLSAG---SEF 88 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~~-~--~~~~~l~DtpG~~~~~~~---~~~ 88 (363)
.+|+|+|+||||||||+|.|+|...+...... ...+.......+... . ...++++||+|++..... ...
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~ 98 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 98 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHH
Confidence 68999999999999999999987433211100 001111111111111 1 347889999998542110 011
Q ss_pred HHHHH----HHHHh---------ccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcch
Q 017924 89 VGKEI----VKCLG---------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE 154 (363)
Q Consensus 89 ~~~~~----~~~~~---------~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~ 154 (363)
+...+ ...+. ....++++++|+++.+ +.+...+. +.+..+.. . .++++|+||.|....
T Consensus 99 l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~---~~l~~l~~-~--~~iilV~~K~Dl~~~-- 170 (301)
T 2qnr_A 99 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAIHN-K--VNIVPVIAKADTLTL-- 170 (301)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH---HHHHHHTT-T--SCEEEEECCGGGSCH--
T ss_pred HHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH---HHHHHHHh-c--CCEEEEEEeCCCCCH--
Confidence 22211 11111 1112456677777754 34777664 33444322 2 279999999998865
Q ss_pred hhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 155 KTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 155 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+..+... ....+...+..++ ..|+..+ ++++++..+...+.
T Consensus 171 ~e~~~~~~~-----~~~~~~~~~~~~~------e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 171 KERERLKKR-----ILDEIEEHNIKIY------HLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHH-----HHHHHHHTTCCCC------CCC----------CHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHcCCeEE------ecCCccc-cccHHHHHHHHHhh
Confidence 444333333 4444554443332 4566677 78888777666553
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=120.46 Aligned_cols=160 Identities=16% Similarity=0.212 Sum_probs=94.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc-cccc------------cCCCCCceeeEeEEEEee--C--CcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA-FKAS------------AGSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~-~~~~------------~~~~~~t~~~~~~~~~~~--~--~~~~~l~DtpG~~~~ 82 (363)
.+|+|+|+.|+|||||++.|++... +... ....++|+......+.+. + ...++|+||||..+.
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 6899999999999999999975321 0000 001223433333333332 1 257889999997663
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~ 162 (363)
..++.+. ...+|++++|+|+++.........+..+... + .++++++||+|+... . .+....
T Consensus 87 -------~~ev~r~----l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~-~----ipiIvviNKiDl~~a--~-~~~v~~ 147 (600)
T 2ywe_A 87 -------SYEVSRA----LAACEGALLLIDASQGIEAQTVANFWKAVEQ-D----LVIIPVINKIDLPSA--D-VDRVKK 147 (600)
T ss_dssp -------HHHHHHH----HHTCSEEEEEEETTTBCCHHHHHHHHHHHHT-T----CEEEEEEECTTSTTC--C-HHHHHH
T ss_pred -------HHHHHHH----HHhCCEEEEEEECCCCccHHHHHHHHHHHHC-C----CCEEEEEeccCcccc--C-HHHHHH
Confidence 2233333 2467999999999867776666665554432 2 279999999998754 1 222222
Q ss_pred cCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
. +...++.. .......|+..+.++.+|++.+...+.
T Consensus 148 e--------l~~~lg~~---~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 148 Q--------IEEVLGLD---PEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp H--------HHHTSCCC---GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred H--------HHHhhCCC---cccEEEEEeecCCCchHHHHHHHHhcc
Confidence 2 22222211 012346788899999999998877664
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-11 Score=120.18 Aligned_cols=165 Identities=19% Similarity=0.210 Sum_probs=95.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc------ccc----c----cCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA------FKA----S----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~------~~~----~----~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
....+|+|+|+.|+|||||++.|++... |.. . ....++|+......+.. .+..++|+||||..
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHe-- 370 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHA-- 370 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHH--
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChH--
Confidence 4557999999999999999999986421 000 0 01122333332222333 56789999999943
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccc-eEEEEeCCCCCCcchhhHHHHh
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL 161 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~i~v~n~~D~~~~~~~~l~~~~ 161 (363)
.+...+...+..+|++++|+|+++.........+..+... +- + +++++||+|+... ...++...
T Consensus 371 ---------dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-gI----P~IIVVINKiDLv~d-~e~le~i~ 435 (1289)
T 3avx_A 371 ---------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-GV----PYIIVFLNKCDMVDD-EELLELVE 435 (1289)
T ss_dssp ---------HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-TC----SCEEEEEECCTTCCC-HHHHHHHH
T ss_pred ---------HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-CC----CeEEEEEeecccccc-hhhHHHHH
Confidence 3444455566789999999999866555556666555432 32 5 7889999999853 12233333
Q ss_pred ccCCCchHHHHHHhcCC---ceEEecCCCcccccch--------hHHHHHHHHHHHHH
Q 017924 162 GHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGT--------EQVRQLLSLVNSVI 208 (363)
Q Consensus 162 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~ 208 (363)
.. +..++...+. ...+ ...|+..+ .++.+|++.|...+
T Consensus 436 eE-----i~elLk~~G~~~~~vp~----IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 436 ME-----VRELLSQYDFPGDDTPI----VRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HH-----HHHHHHHTTSCTTTCCE----EECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HH-----HHHHHHhccccccceeE----EEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 33 4445544431 1111 13455555 45666766665543
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-14 Score=128.42 Aligned_cols=160 Identities=14% Similarity=0.172 Sum_probs=95.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|+.|+|||||++.|++.... . ...++.|.....+.+.+ ++..++|+||||..+.. ....
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~-~-~e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~-----------~~~~ 69 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVA-S-GEAGGITQHIGAYHVET-ENGMITFLDTPGHAAFT-----------SMRA 69 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHS-B-TTBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCT-----------TSBC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCc-c-ccCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHH-----------HHHH
Confidence 369999999999999999999865431 1 11233444443334444 56788999999976532 1223
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.....+|++++|+|+++.........+..+.. .+ .|+++++||+|+...+...+...+.. ...+...++.
T Consensus 70 ~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~-~~----vPiIVviNKiDl~~~~~~~v~~~l~~-----~~~~~~~~~~ 139 (501)
T 1zo1_I 70 RGAQATDIVVLVVAADDGVMPQTIEAIQHAKA-AQ----VPVVVAVNKIDKPEADPDRVKNELSQ-----YGILPEEWGG 139 (501)
T ss_dssp SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH-TT----CCEEEEEECSSSSTTCCCCTTCCCCC-----CCCCTTCCSS
T ss_pred HHHhhCCEEEEEeecccCccHHHHHHHHHHHh-cC----ceEEEEEEeccccccCHHHHHHHHHH-----hhhhHHHhCC
Confidence 44567899999999875554444555544433 22 28999999999864311111111111 0000011111
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
... ....|+.++.++.+|++.+..
T Consensus 140 ~~~----~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 140 ESQ----FVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp SCE----EEECCTTTCTTCTTHHHHTTT
T ss_pred Ccc----EEEEeeeeccCcchhhhhhhh
Confidence 111 125688888999999988753
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.6e-12 Score=104.71 Aligned_cols=121 Identities=11% Similarity=0.165 Sum_probs=70.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|..|+|||||++.|++...... ......++... + ....+.++||||..... ..+..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-~~~~~~~~~~~-----~-~~~~~~l~Dt~G~~~~~-------~~~~~~ 75 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAAD-----Y-DGSGVTLVDFPGHVKLR-------YKLSDY 75 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEETT-----G-GGSSCEEEECCCCGGGT-------HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-eeecCceEEEE-----e-eCceEEEEECCCcHHHH-------HHHHHH
Confidence 3457999999999999999999997653111 11111111111 1 34567899999975421 122222
Q ss_pred HhccCCCccEEEEEeecC---CCCCHHHHHHHHHHHHHhc--cccccceEEEEeCCCCCCc
Q 017924 97 LGMAKDGIHAFLVVFSVT---NRFSQEEETAVHRLPNLFG--KNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~---~~~~~~~~~~l~~~~~~~~--~~~~~~~i~v~n~~D~~~~ 152 (363)
+......+|++++|+|++ ..+.... ..+..+..... .....|+++|.||+|+...
T Consensus 76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 76 LKTRAKFVKGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HHHHGGGEEEEEEEEETTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHhccccCCEEEEEEECCCChHHHHHHH-HHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 222223468999999987 2333322 23333322211 0112389999999999865
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=8.9e-12 Score=111.00 Aligned_cols=168 Identities=14% Similarity=0.114 Sum_probs=95.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
..|+|||.|||||||||++|+|........ . ..|.......+.+.+...++++|+||+.........+...+.+.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~-~-ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~--- 232 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPY-P-FTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRH--- 232 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCC-T-TCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH---
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCc-c-cceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHH---
Confidence 468999999999999999999875321111 1 11223334444442237889999999864210000011122222
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHH-HHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
..+++.++++++++ +-...+... .+.+..+...-...|.++|+||+|.... ..++. +...+...+.
T Consensus 233 -~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~---------l~~~l~~~g~ 299 (416)
T 1udx_A 233 -IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKA---------LADALAREGL 299 (416)
T ss_dssp -HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHH---------HHHHHHTTTS
T ss_pred -HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHH---------HHHHHHhcCC
Confidence 24678999999986 222222221 2222221100012388999999998744 32222 2223322222
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
.++ ..|+..+.++.+|++.|...+...
T Consensus 300 ~vi------~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 300 AVL------PVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp CEE------ECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred eEE------EEECCCccCHHHHHHHHHHHHHhc
Confidence 233 457778899999999999888653
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-12 Score=111.05 Aligned_cols=122 Identities=14% Similarity=0.177 Sum_probs=77.1
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..+|+|||.+|+|||||+|+|+|.... ....+ +|.+.....+.+ .+..+.|+||||+.............+...+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~---v~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESE---AAEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCC---GGGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCc---ccCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 358999999999999999999987642 22222 444555555555 8889999999999754322223344444433
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccc-cccceEEEEeCCCCC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN-VFDYMIVVFTGGDDL 150 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~i~v~n~~D~~ 150 (363)
..+|++++|+|+.+.+ .+...+..-...++.. ..++.++++||+|..
T Consensus 148 ----~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 148 ----RTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp ----HHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred ----HhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 3579999999986322 2333333323333322 223788899999864
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-11 Score=106.86 Aligned_cols=113 Identities=14% Similarity=0.134 Sum_probs=57.7
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeC
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~ 146 (363)
.+..+.|+||+|+... .. .+ ...+|.+++|++++... +...+.. .++. .+.++|+||
T Consensus 165 ~~~~~iliDT~Gi~~~---~~----~l-------~~~~d~vl~V~d~~~~~---~~~~i~~--~il~----~~~ivVlNK 221 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EF----AV-------ADMVDMFVLLLPPAGGD---ELQGIKR--GIIE----MADLVAVTK 221 (349)
T ss_dssp TTCSEEEEECCCC--C---HH----HH-------HTTCSEEEEEECCC-----------------CC----SCSEEEECC
T ss_pred CCCCEEEEECCCcchh---hh----hH-------HhhCCEEEEEEcCCcch---hHHHhHH--HHHh----cCCEEEEee
Confidence 4567789999997642 11 11 23679999999986221 1111111 1122 268899999
Q ss_pred CCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEE-ecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL-FDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 147 ~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+|+... ......+.. +...+......... .......|+.++.++.+|++.|...+.
T Consensus 222 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 222 SDGDLI--VPARRIQAE-----YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CSGGGH--HHHHHHHHH-----HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ecCCCc--hhHHHHHHH-----HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 998743 222222222 22222111100000 001124688889999999999888764
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-13 Score=128.30 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=76.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccccccccc-----------------------------CCCCCceeeEeEEEEeeC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASA-----------------------------GSSGVTKTCEMKTTVLKD 67 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~ 67 (363)
....+|+|+|+.|+|||||++.|++........ ...++|+......+.+ .
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-D 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-C
Confidence 445789999999999999999997532100000 0123344444444444 5
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-----C--CHHHHHHHHHHHHHhccccccce
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-----F--SQEEETAVHRLPNLFGKNVFDYM 140 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~~~~ 140 (363)
+..++|+||||..+.. ..+..+...+|++|+|+|++.. + .......+..+.. .+.. ++
T Consensus 254 ~~~i~iiDTPGh~~f~-----------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgip---~i 318 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFI-----------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGIS---EI 318 (592)
T ss_dssp -----CCEEESSSEEE-----------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSCC---CE
T ss_pred CeEEEEEECCChHHHH-----------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCC---eE
Confidence 6788999999976521 1122334568999999998732 2 3444444444433 3321 48
Q ss_pred EEEEeCCCCCCcchhhHHHHhccCCCchHHHHH-HhcCCc---eEEecCCCcccccchhHHH
Q 017924 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCDNR---CVLFDNKTKDEAKGTEQVR 198 (363)
Q Consensus 141 i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~ 198 (363)
++|+||+|+...+...++..... +..++ ...+.. ..+ ...|+..+.++.
T Consensus 319 IvviNKiDl~~~~~~~~~~i~~e-----l~~~l~~~~g~~~~~~~i----i~iSA~~G~gI~ 371 (592)
T 3mca_A 319 VVSVNKLDLMSWSEDRFQEIKNI-----VSDFLIKMVGFKTSNVHF----VPISAISGTNLI 371 (592)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHH-----HHHHHTTTSCCCGGGEEE----EEECSSSCSSSC
T ss_pred EEEEeccccccccHHHHHHHHHH-----HHHHHHHhhCCCccceEE----EEEecccCcccc
Confidence 89999999875322445545444 55555 333321 111 245666676665
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-11 Score=114.43 Aligned_cols=117 Identities=20% Similarity=0.288 Sum_probs=82.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhh---ccc-----------------ccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL---GRK-----------------AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~---g~~-----------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG 78 (363)
-++|+|||+.++|||||..+|+ |.. .+....-..++|+......+.| +++.++||||||
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPG 109 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTPG 109 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCCC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCCC
Confidence 3799999999999999999885 111 1111122345666666677778 899999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..|+. .+..+.+. -+|++++|+|+...........++.+.+. + .|.++++||+|....
T Consensus 110 HvDF~-------~Ev~raL~----~~DgAvlVvda~~GV~~qT~~v~~~a~~~-~----lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 HQDFS-------EDTYRVLT----AVDSALVVIDAAKGVEAQTRKLMDVCRMR-A----TPVMTFVNKMDREAL 167 (548)
T ss_dssp GGGCS-------HHHHHHHH----SCSEEEEEEETTTBSCHHHHHHHHHHHHT-T----CCEEEEEECTTSCCC
T ss_pred cHHHH-------HHHHHHHH----hcCceEEEeecCCCcccccHHHHHHHHHh-C----CceEEEEecccchhc
Confidence 88863 34444443 46999999999878888888888777654 2 289999999998765
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-11 Score=106.66 Aligned_cols=113 Identities=10% Similarity=0.100 Sum_probs=62.4
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeC
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~ 146 (363)
.+..++|+||||+.+. .. .+ ...+|++++|++++.. . ....+.. ...+ .+.++|+||
T Consensus 147 ~~~~i~liDTpG~~~~---~~----~~-------~~~aD~vl~Vvd~~~~-~--~~~~l~~--~~~~----~p~ivv~NK 203 (341)
T 2p67_A 147 AGYDVVIVETVGVGQS---ET----EV-------ARMVDCFISLQIAGGG-D--DLQGIKK--GLME----VADLIVINK 203 (341)
T ss_dssp TTCSEEEEEEECCTTH---HH----HH-------HTTCSEEEEEECC---------CCCCH--HHHH----HCSEEEECC
T ss_pred cCCCEEEEeCCCccch---HH----HH-------HHhCCEEEEEEeCCcc-H--HHHHHHH--hhhc----ccCEEEEEC
Confidence 4667899999998752 11 11 2478999999997621 1 1111110 1111 278999999
Q ss_pred CCCCCcchhhHHHHhccCCCchHHHHHHhcCCceE-EecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV-LFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 147 ~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+|.... ..+...+.. +...+........ .+......|+..+.++.+|++.|.+.+.
T Consensus 204 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 204 DDGDNH--TNVAIARHM-----YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCTTCH--HHHHHHHHH-----HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCCCh--HHHHHHHHH-----HHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 998754 333333333 3333332221000 0011235688889999999999888664
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-12 Score=121.74 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=88.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE--------EEee---CCcEEEEEeCCCCCCCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--------TVLK---DGQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~--------~~~~---~~~~~~l~DtpG~~~~~~~ 85 (363)
....+|+|||.+|||||||+|.|++... . .....|+...+.. +... .+..+.++||||.......
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~-~---~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~ 114 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETF-D---PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS 114 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC---------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCC-C---CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH
Confidence 3458999999999999999999997653 1 1111121111111 1111 2467899999996543221
Q ss_pred hHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCC
Q 017924 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~ 165 (363)
. .. +....+++++|+|++ .. .....++..+..... + .|+++|.||+|+........++
T Consensus 115 ~----~~-------~l~~~d~ii~V~D~s-~~-~~~~~~~~~l~~~~~-~--~pvilV~NK~Dl~~~~~v~~~~------ 172 (535)
T 3dpu_A 115 H----QF-------FMTRSSVYMLLLDSR-TD-SNKHYWLRHIEKYGG-K--SPVIVVMNKIDENPSYNIEQKK------ 172 (535)
T ss_dssp C----HH-------HHHSSEEEEEEECGG-GG-GGHHHHHHHHHHHSS-S--CCEEEEECCTTTCTTCCCCHHH------
T ss_pred H----HH-------HccCCcEEEEEEeCC-Cc-hhHHHHHHHHHHhCC-C--CCEEEEEECCCcccccccCHHH------
Confidence 1 11 123579999999987 33 333455566655433 2 3899999999987541111111
Q ss_pred CchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+.......+..++ .+|+.++.++.+|++.+...+..
T Consensus 173 ---~~~~~~~~~~~~~------~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 173 ---INERFPAIENRFH------RISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp ---HHHHCGGGTTCEE------ECCC-----CTTHHHHHHHHHTC
T ss_pred ---HHHHHHhcCCceE------EEecCcccCHHHHHHHHHHHHhc
Confidence 2223333333333 56788889999999998887754
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.32 E-value=4.4e-12 Score=115.71 Aligned_cols=119 Identities=17% Similarity=0.162 Sum_probs=65.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc-cc------------------------cc----cCCCCCceeeEeEEEEeeC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FK------------------------AS----AGSSGVTKTCEMKTTVLKD 67 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~-~~------------------------~~----~~~~~~t~~~~~~~~~~~~ 67 (363)
....+|+++|+.|+|||||++.|++... +. .+ ....+.|+......+.+ +
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence 3457999999999999999999864211 00 00 00123454444444444 6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCC-------HHHHHHHHHHHHHhccccccce
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS-------QEEETAVHRLPNLFGKNVFDYM 140 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~ 140 (363)
+..++|+||||..+ +...+...+..+|++++|+|+++... ...+..+..+.. .+- .++
T Consensus 120 ~~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v---p~i 184 (467)
T 1r5b_A 120 HRRFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI---NHL 184 (467)
T ss_dssp SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC---SSE
T ss_pred CeEEEEEECCCcHH-----------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC---CEE
Confidence 78899999999654 22333344567899999999874320 122333333322 232 138
Q ss_pred EEEEeCCCCCC
Q 017924 141 IVVFTGGDDLE 151 (363)
Q Consensus 141 i~v~n~~D~~~ 151 (363)
++++||+|+..
T Consensus 185 ivviNK~Dl~~ 195 (467)
T 1r5b_A 185 VVVINKMDEPS 195 (467)
T ss_dssp EEEEECTTSTT
T ss_pred EEEEECccCCC
Confidence 89999999964
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.7e-12 Score=110.24 Aligned_cols=114 Identities=17% Similarity=0.073 Sum_probs=65.0
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeC
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~ 146 (363)
.+..+.|+||||+... . ..+ ...+|++++|++.+ ..... ..+.... ...++++|+||
T Consensus 170 ~~~~~iiiDTpGi~~~---~----~~~-------~~~aD~vl~V~d~~-~~~~~-----~~l~~~~---~~~p~ivVlNK 226 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---E----VAV-------ANMVDTFVLLTLAR-TGDQL-----QGIKKGV---LELADIVVVNK 226 (355)
T ss_dssp TTCCEEEEEECSCSSH---H----HHH-------HTTCSEEEEEEESS-TTCTT-----TTCCTTS---GGGCSEEEEEC
T ss_pred CCCCEEEEeCCCCCcH---H----HHH-------HHhCCEEEEEECCC-CCccH-----HHHHHhH---hhcCCEEEEEC
Confidence 3567889999997641 1 011 14679999999976 21110 1111100 11288999999
Q ss_pred CCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEe-cCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 147 ~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+|.... ......... +...+.........+ ......|+.++.++.+|++.|...+..
T Consensus 227 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 227 ADGEHH--KEARLAARE-----LSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCGGGH--HHHHHHHHH-----HHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCCcCh--hHHHHHHHH-----HHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 998754 334333333 443333222100000 112357888999999999999887654
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=109.88 Aligned_cols=89 Identities=16% Similarity=0.117 Sum_probs=45.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEe--------------------eC---CcEEEEEe
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVL--------------------KD---GQVVNVID 75 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~--------------------~~---~~~~~l~D 75 (363)
.+|+|||.+|+|||||+|+|+|... . .+..+ .|.........+ .+ ...+.|+|
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~--~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvD 77 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV-E--IANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVD 77 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC-----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-c--ccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEE
Confidence 3799999999999999999998762 1 11111 122111111100 01 24688999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCC
Q 017924 76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN 115 (363)
Q Consensus 76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~ 115 (363)
|||+...... .+.+...+......+|++++|+|+++
T Consensus 78 tpG~~~~a~~----~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 78 VAGLVPGAHE----GRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp CC-------------------CCCSSTTCSEEEEEEETTC
T ss_pred CCCcccchhh----hhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 9998642110 12233333455678999999999873
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-11 Score=114.45 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=73.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccc---c----------c-------CCCCCceeeEeEEEEeeCCcEEEEEeCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA---S----------A-------GSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~---~----------~-------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG 78 (363)
..+|+|+|+.|+|||||++.|++...... . . ...+.|+......+.+ .+..++|+||||
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTPG 91 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTPG 91 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECCC
Confidence 47999999999999999999985421000 0 0 0111222222333444 678899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+.. ....+ ++..+|++++|+|++..........+..+.. . . .++++++||+|....
T Consensus 92 ~~df~-------~~~~~----~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~-~--~--ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 92 HEDFS-------EDTYR----TLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL-R--D--TPILTFMNKLDRDIR 149 (529)
T ss_dssp STTCC-------HHHHH----GGGGCSEEEEEEETTTCSCHHHHHHHHHHTT-T--T--CCEEEEEECTTSCCS
T ss_pred ChhHH-------HHHHH----HHHHCCEEEEEEeCCccchHHHHHHHHHHHH-c--C--CCEEEEEcCcCCccc
Confidence 87642 12222 3346799999999986665555444443322 1 2 289999999999765
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.5e-11 Score=114.36 Aligned_cols=117 Identities=26% Similarity=0.276 Sum_probs=78.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccccc---cccc------C-------CCCCceeeEeEEEEeeCCcEEEEEeCCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAF---KASA------G-------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~---~~~~------~-------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 80 (363)
....+|+|+|++|+|||||++.|++.... .+.. . ...++.......+.+ .+..++++||||..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYG 85 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCcc
Confidence 34579999999999999999999854321 0000 0 012344444444455 67889999999976
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
+. ...+...+ ..+|++++|+|+...+.......+..+... + .++++++||+|..
T Consensus 86 ~f-------~~~~~~~l----~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-~----ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DF-------VGEIRGAL----EAADAALVAVSAEAGVQVGTERAWTVAERL-G----LPRMVVVTKLDKG 139 (665)
T ss_dssp GG-------HHHHHHHH----HHCSEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCEEEEEECGGGC
T ss_pred ch-------HHHHHHHH----hhcCcEEEEEcCCcccchhHHHHHHHHHHc-c----CCEEEEecCCchh
Confidence 52 12233332 346899999998777877777776666542 2 2899999999987
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=117.89 Aligned_cols=118 Identities=25% Similarity=0.358 Sum_probs=77.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc-cc--cccC-------------CCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA-FK--ASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~-~~--~~~~-------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
.-.+|+|+|+.|+|||||+|.|++... +. .... ....|+......+.+ ++..++|+||||+.+
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d 87 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHVD 87 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCcc
Confidence 447999999999999999999984321 00 0000 112333333444455 678899999999876
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.. ....+.+ ..+|++++|+|+.+.........+..+... + .++++|+||+|+...
T Consensus 88 f~-------~~~~~~l----~~aD~~llVvDa~~g~~~~~~~~~~~~~~~-~----~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 FT-------VEVERSL----RVLDGAVTVLDAQSGVEPQTETVWRQATTY-G----VPRIVFVNKMDKLGA 142 (693)
T ss_dssp CC-------HHHHHHH----HHCSEEEEEEETTTBSCHHHHHHHHHHHHT-T----CCEEEEEECTTSTTC
T ss_pred hH-------HHHHHHH----HHCCEEEEEECCCCCCcHHHHHHHHHHHHc-C----CCEEEEEECCCcccc
Confidence 42 1222222 247999999999867777777777665542 2 289999999998754
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-11 Score=115.29 Aligned_cols=118 Identities=21% Similarity=0.271 Sum_probs=76.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc-c--ccccC-------------CCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA-F--KASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~-~--~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
...+|+|+|+.|+|||||++.|+.... + ..... ....|+......+.+ .+..++|+||||..+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d 89 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPGHVD 89 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCSSTT
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcCccc
Confidence 447999999999999999999983211 0 00000 123444444445555 678899999999866
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
. .....+.+ ..+|++++|+|+++.........+..+... + .++++|+||+|....
T Consensus 90 f-------~~~~~~~l----~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-~----~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 F-------TIEVERSM----RVLDGAIVVFDSSQGVEPQSETVWRQAEKY-K----VPRIAFANKMDKTGA 144 (691)
T ss_dssp C-------HHHHHHHH----HHCSEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCEEEEEECTTSTTC
T ss_pred h-------HHHHHHHH----HHCCEEEEEEECCCCcchhhHHHHHHHHHc-C----CCEEEEEECCCcccC
Confidence 3 12233332 246999999999867777776666655442 2 289999999998755
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=9.8e-11 Score=102.08 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=58.6
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHH-HHHHHHhccccccceEEEEe
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV-HRLPNLFGKNVFDYMIVVFT 145 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~i~v~n 145 (363)
.+..+.|+||+|+... ... + ...+|.++++++.+ .. .+...+ ..+... +.++++|
T Consensus 146 ~~~~~iliDT~Gi~~~---~~~----v-------~~~~d~vl~v~d~~-~~--~~~~~i~~~i~~~-------~~ivvlN 201 (337)
T 2qm8_A 146 AGFDVILVETVGVGQS---ETA----V-------ADLTDFFLVLMLPG-AG--DELQGIKKGIFEL-------ADMIAVN 201 (337)
T ss_dssp TTCCEEEEEECSSSSC---HHH----H-------HTTSSEEEEEECSC-C--------CCTTHHHH-------CSEEEEE
T ss_pred CCCCEEEEECCCCCcc---hhh----H-------HhhCCEEEEEEcCC-Cc--ccHHHHHHHHhcc-------ccEEEEE
Confidence 4667889999998763 111 1 14679999999875 11 111111 011111 5677789
Q ss_pred CCCCCCcchhhHHHHhccCCCchHHHHHHhcCCce-EEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC-VLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 146 ~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
|+|+.... ......... +...+....... ..+......|+.++.++.+|++.|.+...
T Consensus 202 K~Dl~~~~-~~s~~~~~~-----l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 202 KADDGDGE-RRASAAASE-----YRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCSTTCCH-HHHHHHHHH-----HHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred chhccCch-hHHHHHHHH-----HHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99975431 112222222 222222111000 00011123688889999999999888764
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=7e-11 Score=99.25 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=51.7
Q ss_pred CccEEEEEeecCCC--CCHHHH-HHHHHHHHHh-ccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc-C
Q 017924 103 GIHAFLVVFSVTNR--FSQEEE-TAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC-D 177 (363)
Q Consensus 103 ~~~~~l~v~~~~~~--~~~~~~-~~l~~~~~~~-~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~ 177 (363)
++|++++|+|+++. .+-... .++..+.... ... .++++|.||+|+... ..++ . ...+.... +
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~--~piilV~NK~Dl~~~--~~v~----~-----~~~~~~~~~~ 228 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK--KPIVVVLTKCDEGVE--RYIR----D-----AHTFALSKKN 228 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTT--CCEEEEEECGGGBCH--HHHH----H-----HHHHHHTSSS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCC--CCEEEEEEccccccc--HHHH----H-----HHHHHHhcCC
Confidence 47999999999844 444332 3444444331 122 389999999998644 2222 1 22233221 2
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..++ ..|++.+.++.++++.|...+
T Consensus 229 ~~~~------e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 229 LQVV------ETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp CCEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEE------EEECCCCCCHHHHHHHHHHHh
Confidence 2222 568888899999998876654
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-10 Score=110.44 Aligned_cols=119 Identities=20% Similarity=0.257 Sum_probs=76.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc-ccc--ccC-------------CCCCceeeEeEEEEeeCC-------cEEEE
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKA--SAG-------------SSGVTKTCEMKTTVLKDG-------QVVNV 73 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~-~~~--~~~-------------~~~~t~~~~~~~~~~~~~-------~~~~l 73 (363)
..-.+|+|+|+.|+|||||++.|+.... +.. ... ..+.|+......+.+ .+ ..++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEE
Confidence 3447999999999999999999964211 000 000 123344444444444 34 78999
Q ss_pred EeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 74 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
|||||..+. ..+..+. ...+|++++|+|++..........+..+... + .++++|+||+|....
T Consensus 87 iDTPG~~df-------~~~~~~~----l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-~----ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDF-------TIEVERS----MRVLDGAVMVYCAVGGVQPQSETVWRQANKY-K----VPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccch-------HHHHHHH----HHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc-C----CCEEEEEeCCCcccc
Confidence 999997653 1222222 2357999999999866655555555544332 2 289999999998755
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.2e-10 Score=95.62 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=69.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|..|+|||||++.+.+... .........|+......+ .....+.+|||+|......+.. +. ...
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l-----~~---~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSY-----DS---ERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSH-----HH---HHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhh-----hh---hhh
Confidence 589999999999999998875532 111111112222222222 1346788999999876421111 01 123
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHHHH-HHHH--hccccccceEEEEeCCCCCCc
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAVHR-LPNL--FGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~-~~~~--~~~~~~~~~i~v~n~~D~~~~ 152 (363)
+.+++++++|+|.+++ .......+.. +... ...++ +++++.||+|+...
T Consensus 70 yr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~i--pillvgNK~DL~~~ 121 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSI--NIEVLIHKVDGLSE 121 (331)
T ss_dssp HTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTC--EEEEECCCCCSSCS
T ss_pred ccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCC--cEEEEEECcccCch
Confidence 4678999999999855 3333333322 2221 12233 88999999999865
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.5e-11 Score=113.83 Aligned_cols=116 Identities=22% Similarity=0.321 Sum_probs=82.6
Q ss_pred cEEEEEcCCCCchHHHHHHhh---cccccccccC-------------CCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSIL---GRKAFKASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~---g~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (363)
++|+|+|+.++|||||...|+ |...-..... .+++|+......+.| +++.++|+||||..|+
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF- 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF- 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH-
Confidence 589999999999999999885 2211000010 123455555556666 7889999999998885
Q ss_pred CChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+..+.+ .-+|++++|+|+........+..++.+... + + |.++++||+|....
T Consensus 81 ------~~Ev~raL----~~~DgavlVVDa~~GV~~qT~~v~~~a~~~-~--l--p~i~~INKmDr~~a 134 (638)
T 3j25_A 81 ------LAEVYRSL----SVLDGAILLISAKDGVQAQTRILFHALRKM-G--I--PTIFFINKIDQNGI 134 (638)
T ss_dssp ------HHHHHHHH----TTCSEEECCEESSCTTCSHHHHHHHHHHHH-T--C--SCEECCEECCSSSC
T ss_pred ------HHHHHHHH----HHhCEEEEEEeCCCCCcHHHHHHHHHHHHc-C--C--CeEEEEeccccccC
Confidence 33444444 356999999999877877788888777764 2 2 78899999998755
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=109.37 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcccc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.|+|||+||||||||+++|+|...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-
T ss_pred eEEEECCCCChHHHHHHHHhCCCC
Confidence 599999999999999999999753
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-09 Score=104.66 Aligned_cols=117 Identities=28% Similarity=0.321 Sum_probs=79.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc---c-------------cccccCCCCCceeeEeEEEEee------CCcEEEEEeCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK---A-------------FKASAGSSGVTKTCEMKTTVLK------DGQVVNVIDTP 77 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~---~-------------~~~~~~~~~~t~~~~~~~~~~~------~~~~~~l~Dtp 77 (363)
++|+|||+.++|||||...|+-.. . +......+++|+......+.|. +++.++|||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 689999999999999999885111 0 0011122445555555555552 25689999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
|..|+ ..+..+.+. -+|++++|+|+...........++.+... .. +.++++||+|....
T Consensus 94 GHvDF-------~~Ev~~aLr----~~DgavlvVDaveGV~~qT~~v~~~a~~~---~l--p~i~~iNKiDr~~a 152 (709)
T 4fn5_A 94 GHVDF-------TIEVERSLR----VLDGAVVVFCGTSGVEPQSETVWRQANKY---GV--PRIVYVNKMDRQGA 152 (709)
T ss_dssp SCTTC-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHH---TC--CEEEEEECSSSTTC
T ss_pred CCccc-------HHHHHHHHH----HhCeEEEEEECCCCCchhHHHHHHHHHHc---CC--CeEEEEccccccCc
Confidence 98885 345555544 34899999999878888888888887664 22 89999999998754
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=7.3e-11 Score=114.90 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=73.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccccc--------------CCCCCceeeEeEEEEee---------------CCc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA--------------GSSGVTKTCEMKTTVLK---------------DGQ 69 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------------~~~ 69 (363)
-.+|+|+|+.|+|||||++.|++........ ...++|+......+.+. .+.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 3689999999999999999998642110000 01122332222223331 156
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCC
Q 017924 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (363)
Q Consensus 70 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~ 149 (363)
.++||||||..+.. ...... ...+|++++|+|+.+..+......+..+... . .++++|+||+|+
T Consensus 99 ~i~liDTPG~~df~-------~~~~~~----l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~---~--~p~ilviNK~D~ 162 (842)
T 1n0u_A 99 LINLIDSPGHVDFS-------SEVTAA----LRVTDGALVVVDTIEGVCVQTETVLRQALGE---R--IKPVVVINKVDR 162 (842)
T ss_dssp EEEEECCCCCCSSC-------HHHHHH----HHTCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CEEEEEEECHHH
T ss_pred eEEEEECcCchhhH-------HHHHHH----HHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCeEEEEECCCc
Confidence 78999999987742 122222 2367999999999867777766655544321 2 278999999997
Q ss_pred C
Q 017924 150 L 150 (363)
Q Consensus 150 ~ 150 (363)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 6
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.9e-10 Score=97.58 Aligned_cols=89 Identities=15% Similarity=0.048 Sum_probs=51.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC-----------------cEEEEEeCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFD 81 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~l~DtpG~~~ 81 (363)
+.+|+|||.+|+|||||+|+|+|... ...... .+|.......+.+ .+ ..+.++||||+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~-~v~~~p-~tTi~p~~g~v~~-~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGI-EAANYP-FCTIEPNTGVVPM-PDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------C-CCCCCCCSSEEEC-CCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-cccCCC-CceECceEEEEec-CCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 36899999999999999999998652 111111 1122222222222 22 4688999999875
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
... . .+.+...+.....++|++++|+|++
T Consensus 79 ~a~---~-~~gl~~~fl~~ir~ad~il~VvD~~ 107 (363)
T 1jal_A 79 GAS---K-GEGLGNKFLANIRETDAIGHVVRCF 107 (363)
T ss_dssp THH---H-HGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred ccc---c-cchHHHHHHHHHHhcCeEEEEEecC
Confidence 210 0 1111111112235789999999986
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-11 Score=108.46 Aligned_cols=125 Identities=16% Similarity=0.198 Sum_probs=69.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccc----cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFK----ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
+.+|+++|.+|+|||||+|+|+|..... ...+....|+.... .+.. +..+.++||||+.+.......+..+..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~-~~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLI-DIPL--DEESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEE-EEES--SSSCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceE-EEEe--cCCeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 3689999999999999999999874211 11222222332222 1222 223779999999875422222222322
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+. ....++.++|+++....+..+....+..+. +.. .++++++||.|.+..
T Consensus 237 ~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~~~--~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 237 KLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVS---GGR--RAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE
T ss_pred HHhc-cccccCceEEEEcCCCEEEEcceEEEEEec---CCC--ceEEEEecCcccccc
Confidence 2222 234678888888764121111211122211 112 389999999999866
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.8e-09 Score=92.67 Aligned_cols=115 Identities=18% Similarity=0.171 Sum_probs=62.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE----eEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE----MKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~----~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
...|+|+|+||||||||+|+|+|... +..|.++.... ...+... ....++++|++|++... ..+ .++
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~----p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~---~~~-~~~ 140 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGN----EEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTN---FPP-DTY 140 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCT----TSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSS---CCH-HHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC----ccCceEEECCeecceeEEeccccccCCeeehHhhcccchH---HHH-HHH
Confidence 35999999999999999999999654 22222221110 0112221 12367899999986422 122 223
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
...+... ..+.+++ ++.+ +.........+.+.. .+ .++++|+|+.|.+
T Consensus 141 L~~~~L~--~~~~~~~-lS~G-~~~kqrv~la~aL~~-~~----~p~~lV~tkpdll 188 (413)
T 1tq4_A 141 LEKMKFY--EYDFFII-ISAT-RFKKNDIDIAKAISM-MK----KEFYFVRTKVDSD 188 (413)
T ss_dssp HHHTTGG--GCSEEEE-EESS-CCCHHHHHHHHHHHH-TT----CEEEEEECCHHHH
T ss_pred HHHcCCC--ccCCeEE-eCCC-CccHHHHHHHHHHHh-cC----CCeEEEEecCccc
Confidence 3322221 2244444 5655 333333333333322 22 2899999998764
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-11 Score=108.89 Aligned_cols=125 Identities=18% Similarity=0.161 Sum_probs=69.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccc---cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFK---ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
+.+|+++|.+|+|||||+|+|+|...+. ...+..+.|+.... .+.. +..++++||||+.+.......+..+...
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~-~~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMI-EIPL--ESGATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEE-EEEC--STTCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeE-EEEe--CCCeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 3589999999999999999999872110 11112222222221 2222 2347799999998654222222222222
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.+. ....++.++|+++....+..+....+..+. +.. .++++++||.|.+..
T Consensus 239 ~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~~~--~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 239 IIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIK---GGR--RSFVCYMANELTVHR 289 (369)
T ss_dssp HHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE
T ss_pred HHh-cccccCceEEEEcCCceEEECCEEEEEEcc---CCC--ceEEEEecCCccccc
Confidence 221 225789999999874221111211122211 112 388999999998765
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-09 Score=92.31 Aligned_cols=130 Identities=12% Similarity=-0.061 Sum_probs=64.0
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHH-HHHHHHHhccccccceEEEEeCC
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGG 147 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~i~v~n~~ 147 (363)
..+.|+||||..+.. . ...+...+...... +++++++|.....+..+... +........ ....++++|+||+
T Consensus 109 ~d~iiiDtpG~~~~~----~-~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~iv~NK~ 181 (262)
T 1yrb_A 109 NDYVLIDTPGQMETF----L-FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL-RLGATTIPALNKV 181 (262)
T ss_dssp CSEEEEECCSSHHHH----H-HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH-HHTSCEEEEECCG
T ss_pred CCEEEEeCCCccchh----h-hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc-ccCCCeEEEEecc
Confidence 367899999965310 0 00111111122245 88999988763444433221 111111110 1113889999999
Q ss_pred CCCCcc-hhhHHHHhccCCCchHHH-----------------HHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 148 DDLEDH-EKTLEDFLGHECPKPLKE-----------------ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 148 D~~~~~-~~~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
|..... ...+.+++.. ....... .+...+.. ......|+..+.++.+|++.|.+.+.
T Consensus 182 D~~~~~~~~~~~~~l~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 182 DLLSEEEKERHRKYFED-IDYLTARLKLDPSMQGLMAYKMCSMMTEVLPP----VRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp GGCCHHHHHHHHHHHHC-HHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCC----CCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHhC-hHHHHHHHhccccccchhHhHHHHHHHHhcCc----ccceEEEecCcccHHHHHHHHHHHhc
Confidence 987541 0112333222 0000001 01222211 12235678889999999999888765
Q ss_pred H
Q 017924 210 Q 210 (363)
Q Consensus 210 ~ 210 (363)
.
T Consensus 257 ~ 257 (262)
T 1yrb_A 257 T 257 (262)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-09 Score=93.81 Aligned_cols=92 Identities=16% Similarity=0.135 Sum_probs=46.7
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC----------------CcEEEEEeCCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLF 80 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~ 80 (363)
..+.+|+|||.+|+|||||+|+|+|... ..... ..+|.......+.+.+ ...+.++||||+.
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~-p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENF-PFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCC-CccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 3457999999999999999999998753 11111 1122222222222211 2358899999987
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
........+...+. .....+|++++|+|+.
T Consensus 98 ~~as~~~glg~~~l----~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 98 KGAHNGQGLGNAFL----SHISACDGIFHLTRAF 127 (396)
T ss_dssp ---------CCHHH----HHHHTSSSEEEEEEC-
T ss_pred cccchhhHHHHHHH----HHHHhcCeEEEEEecC
Confidence 53211111111222 2335789999999976
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=6.9e-09 Score=96.07 Aligned_cols=107 Identities=21% Similarity=0.195 Sum_probs=60.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc-cccccCCCCCceeeEeEEEE--eeCCcEEEEEeCCCCCCCCC--ChHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTV--LKDGQVVNVIDTPGLFDLSA--GSEFVGK 91 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~-~~~~~~~~~~t~~~~~~~~~--~~~~~~~~l~DtpG~~~~~~--~~~~~~~ 91 (363)
.+..+|+|||.+|+|||||||.|+|... |....+...+|......... ...+..+.|+||||+.+... ...++..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~ 115 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWI 115 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHH
Confidence 3447899999999999999999999864 22111111222222111111 12467889999999987533 1122111
Q ss_pred HHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHH
Q 017924 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (363)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (363)
.....+. + + ++|+++...++..+...+..+..
T Consensus 116 fala~ll-s----s--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 116 FALAVLL-S----S--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHH-C----S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHHHHHh-c----C--eEEEECCCCccHHHHHHHHHHHH
Confidence 1111111 1 1 34445444788888777666544
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.87 E-value=4.1e-09 Score=92.98 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=56.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeCC-----------------cEEEEEeCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDG-----------------QVVNVIDTPG 78 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~-----------------~~~~l~DtpG 78 (363)
..+.+|+|||.||||||||+|+|+|..... ....+ +|.......+.+ .+ ..+.++|+||
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~--~~~~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGN--PANYPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTS--TTCCSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccc--ccCCCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEeccc
Confidence 456899999999999999999999865311 22222 222222222333 22 3578999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
+.......+.+...+...+ ..+|++++|+++.
T Consensus 95 l~~~~s~~e~L~~~fl~~i----r~~d~il~Vvd~~ 126 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHV----RAVDAIYQVVRAF 126 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHH----TTCSEEEEEEECC
T ss_pred cccCCcHHHHHHHHHHHHH----HHHHHHHHHHhcc
Confidence 8753322222223333332 3679999999875
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.80 E-value=5.8e-08 Score=88.45 Aligned_cols=122 Identities=14% Similarity=0.169 Sum_probs=68.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhh------cccccccccCC-CCCce----------eeEeEEEE---------------e
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGS-SGVTK----------TCEMKTTV---------------L 65 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~------g~~~~~~~~~~-~~~t~----------~~~~~~~~---------------~ 65 (363)
...+|+|+|.+|+||||+++.|+ |.......... ++... ...++... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 44699999999999999999998 65432111110 11000 00111100 0
Q ss_pred -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccce-EEE
Q 017924 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM-IVV 143 (363)
Q Consensus 66 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-i~v 143 (363)
..+..++||||||.... +..+..++...... ..+|.+++|+|+..... .......+... .++ ++|
T Consensus 180 ~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~gvV 246 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVASVI 246 (504)
T ss_dssp HHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCCEE
T ss_pred HHCCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceEEE
Confidence 04567889999998752 22334444333221 15789999999874332 22233333221 154 789
Q ss_pred EeCCCCCCc
Q 017924 144 FTGGDDLED 152 (363)
Q Consensus 144 ~n~~D~~~~ 152 (363)
+||+|....
T Consensus 247 lNK~D~~~~ 255 (504)
T 2j37_W 247 VTKLDGHAK 255 (504)
T ss_dssp EECTTSCCC
T ss_pred EeCCccccc
Confidence 999998754
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=82.98 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+|+|+|..|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999865
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-08 Score=86.27 Aligned_cols=66 Identities=20% Similarity=0.316 Sum_probs=41.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~ 88 (363)
...+|+|+|.+|+|||||+|+|+|......+...+ +|...+. +.. +..+.++||||+........+
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g-~T~~~~~--~~~--~~~~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPG-ITTSQQW--VKV--GKELELLDTPGILWPKFEDEL 184 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC--EEE--TTTEEEEECCCCCCSCCCCHH
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCC-eeeeeEE--EEe--CCCEEEEECcCcCCCCCCCHH
Confidence 45799999999999999999999987533333222 2322322 222 446789999999876544433
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=89.72 Aligned_cols=88 Identities=20% Similarity=0.173 Sum_probs=53.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEee--------------------CCcEEEEEeCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLK--------------------DGQVVNVIDTPG 78 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~--------------------~~~~~~l~DtpG 78 (363)
.+|+|||.+|+|||||+|+|++... . ..... .|+...+....+. ....+.++||||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~-~--v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpG 78 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANA-L--AANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAG 78 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHT-T--CSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-c--ccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCC
Confidence 4799999999999999999997642 1 11111 1222222222211 134688999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
+.........+...+... ...+|++++|+|+.
T Consensus 79 l~~~a~~~~~lg~~fl~~----ir~ad~ii~VvD~~ 110 (368)
T 2dby_A 79 LVKGAHKGEGLGNQFLAH----IREVAAIAHVLRCF 110 (368)
T ss_dssp CCCCCCSSSCTTHHHHHH----HHTCSEEEEEEECC
T ss_pred ccccccccchHHHHHHHH----HHhCCEEEEEEECC
Confidence 875322112223333333 34679999999987
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.7e-07 Score=84.37 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..+..|+|||.||||||||++.|+|..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 356799999999999999999998653
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.62 E-value=3e-07 Score=78.60 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..+..|+|+|+||||||||++.|+|..
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 356799999999999999999998653
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5.7e-08 Score=80.06 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 456999999999999999999998875
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-06 Score=75.67 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++..|+|+|+||||||||++.|+|..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998754
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=5.4e-08 Score=81.55 Aligned_cols=64 Identities=25% Similarity=0.390 Sum_probs=40.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC-ChHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA-GSEF 88 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~ 88 (363)
.+|+|+|.+|+|||||+|+|+|......+...+ +|..... +. -+..+.++||||+..... .+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g-~T~~~~~--~~--~~~~~~l~DtpG~~~~~~~~~~~ 164 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPG-ITKGIQW--FS--LENGVKILDTPGILYKNIFSEDL 164 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCE--EE--CTTSCEEESSCEECCCCCCSHHH
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCC-CccceEE--EE--eCCCEEEEECCCcccCcCCCChh
Confidence 499999999999999999999877533333322 2222221 11 245678999999998665 4443
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.3e-06 Score=76.42 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=66.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhh------cccccccccCCC-CC----------ceeeEeEEEE---------------e
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSS-GV----------TKTCEMKTTV---------------L 65 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~------g~~~~~~~~~~~-~~----------t~~~~~~~~~---------------~ 65 (363)
...+|+++|.+|+||||++..|+ |........... .. .....++... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999887 322111000000 00 0000011000 0
Q ss_pred -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEE
Q 017924 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (363)
Q Consensus 66 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~ 144 (363)
..+..+.||||+|.... +.....++....... .+|.+++|+|+.. ..........+...+ ....+|+
T Consensus 179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~~--~pd~vlLVvDA~~--gq~a~~~a~~f~~~~-----~i~gVIl 246 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISNVI--HPHEVILVIDGTI--GQQAYNQALAFKEAT-----PIGSIIV 246 (443)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGG--GGGHHHHHHHHHHSC-----TTEEEEE
T ss_pred HhCCCCEEEEECCCcccc---hHHHHHHHHHHHHhh--cCceEEEEEeCCC--chhHHHHHHHHHhhC-----CCeEEEE
Confidence 02356789999997652 334444554433222 4688999999862 122222222222221 2566889
Q ss_pred eCCCCCCc
Q 017924 145 TGGDDLED 152 (363)
Q Consensus 145 n~~D~~~~ 152 (363)
||+|....
T Consensus 247 TKlD~~~~ 254 (443)
T 3dm5_A 247 TKLDGSAK 254 (443)
T ss_dssp ECCSSCSS
T ss_pred ECCCCccc
Confidence 99998755
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=98.52 E-value=4.5e-08 Score=80.09 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999999865
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.51 E-value=3.5e-07 Score=75.82 Aligned_cols=133 Identities=9% Similarity=0.035 Sum_probs=68.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-------------eEEEEeeCC--cEEEEEeCCCCC-C
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-------------MKTTVLKDG--QVVNVIDTPGLF-D 81 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-------------~~~~~~~~~--~~~~l~DtpG~~-~ 81 (363)
++..++|+|+||||||||+++|+|... +..|.+..... +.++.+ +. ...++.|...+. .
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q-~~~l~~~tv~enl~~~~~ 101 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ----PTAGEITIDGQPIDNISLENWRSQIGFVSQ-DSAIMAGTIRENLTYGLE 101 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC----CSBSCEEETTEESTTTSCSCCTTTCCEECC-SSCCCCEEHHHHTTSCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEEhhhCCHHHHHhhEEEEcC-CCccccccHHHHHhhhcc
Confidence 456999999999999999999998865 33444333211 111111 00 011222332222 1
Q ss_pred CCCChHHHHHHHHHHHhcc--CC----CccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 82 LSAGSEFVGKEIVKCLGMA--KD----GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~--~~----~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
.......+. +....+... .. +.+.. +......+++++++++.....+.... .++++ ++.+|....
T Consensus 102 ~~~~~~~~~-~~l~~~~l~~~~~~~~~gl~~~--~~~~~~~LSgGq~qrv~lAral~~~p---~lllLDEPts~LD~~~~ 175 (243)
T 1mv5_A 102 GDYTDEDLW-QVLDLAFARSFVENMPDQLNTE--VGERGVKISGGQRQRLAIARAFLRNP---KILMLDEATASLDSESE 175 (243)
T ss_dssp SCSCHHHHH-HHHHHHTCTTTTTSSTTGGGCE--ESTTSBCCCHHHHHHHHHHHHHHHCC---SEEEEECCSCSSCSSSC
T ss_pred CCCCHHHHH-HHHHHhChHHHHHhCccchhch--hccCcCcCCHHHHHHHHHHHHHhcCC---CEEEEECCcccCCHHHH
Confidence 111222222 222222111 00 11111 11112489999999999998887653 45555 678887765
Q ss_pred chhhHHHHhcc
Q 017924 153 HEKTLEDFLGH 163 (363)
Q Consensus 153 ~~~~l~~~~~~ 163 (363)
..+.+.+..
T Consensus 176 --~~i~~~l~~ 184 (243)
T 1mv5_A 176 --SMVQKALDS 184 (243)
T ss_dssp --CHHHHHHHH
T ss_pred --HHHHHHHHH
Confidence 555554443
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.51 E-value=5.4e-08 Score=78.74 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999999865
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.9e-07 Score=81.57 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=57.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc-----------------cccccccCCCCCceeeEeEEEEee--------C--CcE
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR-----------------KAFKASAGSSGVTKTCEMKTTVLK--------D--GQV 70 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~-----------------~~~~~~~~~~~~t~~~~~~~~~~~--------~--~~~ 70 (363)
+-..|+|+|+.++|||||+|.|+|. ..|..+.+...+|. ..+.|. + ...
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~----GIw~~~~p~~~~~~~~~~~~ 141 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETT----GIQIWSEIFLINKPDGKKVA 141 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCC----EEEEESSCEEEECSSSCEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCcee----EEEEecCccccccCCCCcce
Confidence 4478999999999999999999975 12322222222222 222221 1 246
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHH
Q 017924 71 VNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL 131 (363)
Q Consensus 71 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~ 131 (363)
+.++||+|+++... +..-...+-...... .+++||-. ...+...+...|..+.++
T Consensus 142 vvllDTeG~~~~~~-~~~~d~~ifal~~lL---Ss~~IyN~--~~~i~~~~l~~L~~~~e~ 196 (447)
T 3q5d_A 142 VLLMDTQGTFDSQS-TLRDSATVFALSTMI---SSIQVYNL--SQNVQEDDLQHLQLFTEY 196 (447)
T ss_dssp EEEEEEECCCSSHH-HHHHHHHHHHHHHHH---CSEEEEEE--SSSCCHHHHHHHHHHHHH
T ss_pred EEEEcCCccccccc-chhhhHHHHHHHHHH---hhHHHHhh--cccccHHHHHHHHHHHHH
Confidence 88999999987532 111111111111111 23444433 337778787777766553
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.5e-06 Score=72.84 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++..|+|+|+||||||||++.|+|..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998754
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-06 Score=75.82 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=46.2
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCC---------CCCHHHHHHHHHHHHHhccc--
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN---------RFSQEEETAVHRLPNLFGKN-- 135 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~---------~~~~~~~~~l~~~~~~~~~~-- 135 (363)
++..+.++||.|. +.+...+..++.+++++++|+|++. ... .-...+.++...+...
T Consensus 159 ~~v~l~iwDtaGQ-----------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~n-r~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 159 KDIPFHLIDVGGQ-----------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTS-RLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp SSCEEEEEECCSC-----------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSB-HHHHHHHHHHHHHHCGGG
T ss_pred eeeeeccccCCCc-----------ccccccHHHHhccCCEEEEEEECCccccccccccccc-hHHHHHHHHHHHhhhhcc
Confidence 5677899999993 3455666677889999999999861 111 1112233333333211
Q ss_pred cccceEEEEeCCCCCC
Q 017924 136 VFDYMIVVFTGGDDLE 151 (363)
Q Consensus 136 ~~~~~i~v~n~~D~~~ 151 (363)
...+++|+.||+|+..
T Consensus 227 ~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFE 242 (340)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCeEEEEEECchhhh
Confidence 1238999999999764
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.9e-08 Score=83.32 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|||+||||||||+++|+|...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 457999999999999999999998765
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-06 Score=71.85 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..+|+|+|..|+|||||++.|++.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 379999999999999999999854
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.3e-06 Score=73.67 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++..|+|||+||||||||++.|+|..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 456799999999999999999998754
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.9e-07 Score=77.82 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999999876
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.40 E-value=5.3e-07 Score=80.91 Aligned_cols=122 Identities=16% Similarity=0.145 Sum_probs=65.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc------cccccC-CCC--------------C-------ceee--Ee--EEEEee
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA------FKASAG-SSG--------------V-------TKTC--EM--KTTVLK 66 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~------~~~~~~-~~~--------------~-------t~~~--~~--~~~~~~ 66 (363)
..+|+|+|.+|+||||+++.|++... ...... .+. + +... .+ ..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999976321 000000 000 0 0000 00 000001
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccc-cceEEEEe
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF-DYMIVVFT 145 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~i~v~n 145 (363)
.+..+.|+||||... .+..+..++... .....+|.+++|+++.... . .+..+.. +... . ....+|+|
T Consensus 179 ~~~D~vIIDT~G~~~---~~~~l~~~l~~i--~~~~~~d~vllVvda~~g~--~---~~~~~~~-~~~~-~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHK---EEKGLLEEMKQI--KEITNPDEIILVIDGTIGQ--Q---AGIQAKA-FKEA-VGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCS---SHHHHHHHHHHT--TSSSCCSEEEEEEEGGGGG--G---HHHHHHH-HHTT-SCSCEEEEEE
T ss_pred hCCCEEEEcCCCCcc---ccHHHHHHHHHH--HHHhcCcceeEEeeccccH--H---HHHHHHH-Hhhc-ccCCeEEEEe
Confidence 455678999999765 233344444332 2223689999999975222 1 2222322 2211 1 13778999
Q ss_pred CCCCCCc
Q 017924 146 GGDDLED 152 (363)
Q Consensus 146 ~~D~~~~ 152 (363)
|+|....
T Consensus 247 K~D~~~~ 253 (432)
T 2v3c_C 247 KLDGSAK 253 (432)
T ss_dssp CSSSCST
T ss_pred CCCCccc
Confidence 9998643
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=98.38 E-value=2.6e-07 Score=80.46 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|-..
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 456999999999999999999998875
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.5e-07 Score=80.70 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456999999999999999999999875
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-07 Score=81.18 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 456899999999999999999999876
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-05 Score=69.12 Aligned_cols=74 Identities=9% Similarity=0.140 Sum_probs=46.4
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecC-------CCCCH-HHHHHHHHHHHHhccc--c
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-------NRFSQ-EEETAVHRLPNLFGKN--V 136 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~-------~~~~~-~~~~~l~~~~~~~~~~--~ 136 (363)
++..+.++||.|. +.++..+..++.+++++++|++++ +.-+. .-...+.++..++... .
T Consensus 165 ~~v~l~iwDtgGQ-----------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~ 233 (327)
T 3ohm_A 165 QSVIFRMVDVGGQ-----------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 233 (327)
T ss_dssp TTEEEEEEEECCS-----------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred eceeeEEEEcCCc-----------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC
Confidence 5678889999993 345556667788999999999764 11111 1122333444443221 1
Q ss_pred ccceEEEEeCCCCCC
Q 017924 137 FDYMIVVFTGGDDLE 151 (363)
Q Consensus 137 ~~~~i~v~n~~D~~~ 151 (363)
..+++|+.||+|+..
T Consensus 234 ~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 234 NSSVILFLNKKDLLE 248 (327)
T ss_dssp TCEEEEEEECHHHHH
T ss_pred CceEEEEEECchhhh
Confidence 238899999999754
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.7e-07 Score=82.07 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|-..
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 456899999999999999999999876
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=98.32 E-value=4e-07 Score=79.92 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 456899999999999999999999876
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.32 E-value=6.6e-07 Score=79.86 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=65.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc------cccccccC-C--------------CCCceeeEeE----------EE-Ee
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR------KAFKASAG-S--------------SGVTKTCEMK----------TT-VL 65 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~------~~~~~~~~-~--------------~~~t~~~~~~----------~~-~~ 65 (363)
....|+++|++|+||||++..|++. ........ . ..+....... .. ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 4579999999999999999998732 11000000 0 0000000000 00 00
Q ss_pred -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEE
Q 017924 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (363)
Q Consensus 66 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~ 144 (363)
..+..+.++||+|..... .+.....++....... ..+.+++|+|+.. ..........+...++ ...+|+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~--gq~a~~~a~~f~~~~~-----~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASI--GQKAYDLASRFHQASP-----IGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGG--GGGGHHHHHHHHHHCS-----SEEEEE
T ss_pred HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCcc--chHHHHHHHHHhcccC-----CcEEEE
Confidence 024567899999965411 1223344444433222 4588899998762 1222223333333222 577899
Q ss_pred eCCCCCCc
Q 017924 145 TGGDDLED 152 (363)
Q Consensus 145 n~~D~~~~ 152 (363)
||+|....
T Consensus 246 TKlD~~a~ 253 (433)
T 3kl4_A 246 TKMDGTAK 253 (433)
T ss_dssp ECGGGCSC
T ss_pred eccccccc
Confidence 99998754
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.9e-07 Score=80.34 Aligned_cols=27 Identities=33% Similarity=0.414 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+..++|+|+||||||||+++|+|...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 456899999999999999999999875
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.2e-06 Score=79.40 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=28.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
.+.+++|+|+||||||||+++|+|... +..|.+..
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~----p~~G~i~~ 345 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEE----PTEGKIEW 345 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC----CSBCCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEE
Confidence 457999999999999999999999876 45555543
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=98.27 E-value=3e-07 Score=79.96 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456999999999999999999999875
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.26 E-value=3.3e-07 Score=78.09 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+.+++|+|+||||||||+|+|+|...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHhccccc
Confidence 357999999999999999999998764
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.5e-07 Score=80.67 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|-..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 456899999999999999999999865
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.2e-06 Score=80.49 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||++.|+|... +..|.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~----p~~G~i~~ 402 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYD----VDSGSICL 402 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCCEEEE
Confidence 456999999999999999999998865 45554444
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=98.24 E-value=3.7e-07 Score=79.32 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 456999999999999999999999875
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.23 E-value=6e-07 Score=75.30 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 456999999999999999999999875
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=98.23 E-value=5.8e-07 Score=73.72 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... +..|.+..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~ 67 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE----PSEGKIKH 67 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC----CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----CCccEEEE
Confidence 456899999999999999999999876 44454444
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.3e-07 Score=74.34 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456999999999999999999999876
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.20 E-value=4.3e-06 Score=71.45 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..+..|+|+|++|+||||++..|++..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 345689999999999999999987543
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.1e-06 Score=79.31 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=28.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t 55 (363)
++..++|+|+||||||||+++|+|... +..|.+.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~ 326 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEIT----ADEGSVT 326 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC----CSBCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEE
Confidence 456899999999999999999999876 5555443
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=98.19 E-value=5.9e-07 Score=75.11 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 456999999999999999999999865
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.19 E-value=5.9e-07 Score=75.24 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999999865
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.6e-07 Score=75.71 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 456899999999999999999999765
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.4e-06 Score=80.11 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=28.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
.+..++|+|+||||||||+++|+|... +..|.+..
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~----p~~G~I~~ 415 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEE----PTEGKVEW 415 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC----CSBSCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEE
Confidence 456999999999999999999999876 44555543
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.18 E-value=6.7e-07 Score=74.52 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456999999999999999999999865
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=6.5e-07 Score=74.83 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999998865
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.17 E-value=7.9e-07 Score=77.30 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
+..++|+|+||||||||+|+|+|...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 45899999999999999999998764
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.16 E-value=6.9e-07 Score=73.86 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999999865
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.4e-06 Score=73.25 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
+..++|+|+||||||||+|+|+ ...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 4689999999999999999998 654
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=8.6e-07 Score=73.56 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999998865
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.13 E-value=9.5e-07 Score=74.19 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456999999999999999999999865
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=9.6e-07 Score=74.31 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456999999999999999999999865
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.12 E-value=9.7e-07 Score=72.81 Aligned_cols=25 Identities=44% Similarity=0.440 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..++|+|+||||||||+++|+|...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999999999865
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1e-06 Score=74.35 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456899999999999999999999865
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-06 Score=82.48 Aligned_cols=27 Identities=37% Similarity=0.347 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|+|+||||||||+++|+|...
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 457999999999999999999998765
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=98.11 E-value=1e-06 Score=73.11 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456899999999999999999999865
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.1e-05 Score=68.81 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..+.+|+|+|+||+||||++..|++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999987543
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.10 E-value=1.8e-05 Score=67.47 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g 41 (363)
...|+++|++|+||||++..|++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999874
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.9e-06 Score=73.80 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
+..++|+|+||||||||+|+|+|...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 45899999999999999999998765
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.6e-06 Score=66.54 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
++..++|+|+||||||||++.|+|..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999999865
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.2e-06 Score=74.36 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 456899999999999999999999865
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=98.05 E-value=1.9e-06 Score=69.59 Aligned_cols=27 Identities=33% Similarity=0.330 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++..++|+|+||||||||+++|+|..
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345689999999999999999999865
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.04 E-value=4.6e-06 Score=85.41 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|||++|||||||+++|+|... +..|.+.+
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~----~~~G~I~i 477 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD----VLKGKITI 477 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC----CSEEEEEE
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc----cccCcccC
Confidence 456999999999999999999998866 55554444
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=98.04 E-value=9.6e-07 Score=82.84 Aligned_cols=27 Identities=33% Similarity=0.314 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 457999999999999999999998865
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.03 E-value=2e-06 Score=67.49 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchHHHHHHhhccc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+++|+|+||||||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999875
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=2.7e-05 Score=69.33 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=60.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhc-----------------ccccccccCCCCCceeeEeEE----EEeeCC--cEEEE
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILG-----------------RKAFKASAGSSGVTKTCEMKT----TVLKDG--QVVNV 73 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g-----------------~~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~l 73 (363)
.+-..|+|+|..++|||+|+|.|++ ...|..+.+...+|....+.. ....++ ..+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 3457899999999999999997752 133443333344444333221 111122 46889
Q ss_pred EeCCCCCCCCCChHHHHHHHHH-HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHH
Q 017924 74 IDTPGLFDLSAGSEFVGKEIVK-CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL 131 (363)
Q Consensus 74 ~DtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~ 131 (363)
+||.|+++....... ...|-. .+..+ .++||-.. ..+...+...|..+.++
T Consensus 145 lDTEG~~d~~~~~~~-d~~ifaLa~LLS----S~~IyN~~--~~i~~~~L~~L~~~tel 196 (457)
T 4ido_A 145 MDTQGTFDSQSTLRD-SATVFALSTMIS----SIQVYNLS--QNVQEDDLQHLQLFTEY 196 (457)
T ss_dssp EEECCBTCTTCCHHH-HHHHHHHHHHHC----SEEEEEEE--SSCCHHHHHHHHHHHHH
T ss_pred EeccCCCCcccCccc-cHHHHHHHHHHh----hheeeccc--ccCCHHHHHHHHHHHHH
Confidence 999999886554221 112211 11111 44555433 36777777777666543
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.5e-06 Score=69.99 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|. .
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~ 46 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-A 46 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-H
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-C
Confidence 3468999999999999999999998 6
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=98.01 E-value=2.9e-06 Score=71.27 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
++..++|+|+||||||||+++|+|.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999997
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.99 E-value=7.3e-06 Score=83.97 Aligned_cols=134 Identities=13% Similarity=0.108 Sum_probs=74.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-------------eEEEEeeCCc--EEEEEeC--CCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-------------MKTTVLKDGQ--VVNVIDT--PGLF 80 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-------------~~~~~~~~~~--~~~l~Dt--pG~~ 80 (363)
++.+|+|||++|||||||+++|.|-.. +..|.+.++.. +..+.+ +.. .-++-|. -|..
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~----p~~G~I~iDG~di~~i~~~~lR~~i~~V~Q-dp~LF~gTIreNI~~gld 1178 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYD----TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQ-EPTLFDCSIAENIIYGLD 1178 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSC----CSSSEEEETTEETTTBCHHHHHTTEEEECS-SCCCCSEEHHHHHSSSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCcc----CCCCEEEECCEEhhhCCHHHHHhheEEECC-CCEeeCccHHHHHhccCC
Confidence 467999999999999999999997765 55555544322 111111 000 0111121 1222
Q ss_pred CCCCChHHHHHHHHHH-----HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 81 DLSAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
....+++++.+.+... +.....+.|..+ -+.+.++++++++++...+.++... +++|+ +..+|..++
T Consensus 1179 ~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~v--ge~G~~LSgGQrQriaiARAllr~~---~ILiLDEaTSaLD~~tE 1253 (1321)
T 4f4c_A 1179 PSSVTMAQVEEAARLANIHNFIAELPEGFETRV--GDRGTQLSGGQKQRIAIARALVRNP---KILLLDEATSALDTESE 1253 (1321)
T ss_dssp TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEE--TTTSCSSCHHHHHHHHHHHHHHSCC---SEEEEESCCCSTTSHHH
T ss_pred CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEe--cCCCcccCHHHHHHHHHHHHHHhCC---CEEEEeCccccCCHHHH
Confidence 2233455554443332 112223334332 2333589999999999999888753 55555 567776554
Q ss_pred chhhHHHHhcc
Q 017924 153 HEKTLEDFLGH 163 (363)
Q Consensus 153 ~~~~l~~~~~~ 163 (363)
..+.+.+..
T Consensus 1254 --~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1254 --KVVQEALDR 1262 (1321)
T ss_dssp --HHHHHHHTT
T ss_pred --HHHHHHHHH
Confidence 455554443
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=3.1e-06 Score=70.34 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
++..++|+|+||||||||+++|+|.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999996
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.99 E-value=2.2e-05 Score=67.60 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.++..|+|+|.+|+||||++..|++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45578999999999999999988753
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.99 E-value=3.4e-06 Score=70.54 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 456999999999999999999998754
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.97 E-value=5.7e-05 Score=67.78 Aligned_cols=124 Identities=19% Similarity=0.157 Sum_probs=64.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhh-------cccccccccCC-CCCcee----------eEeEE--------------E-
Q 017924 17 NGERTVVLLGRTGNGKSATGNSIL-------GRKAFKASAGS-SGVTKT----------CEMKT--------------T- 63 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~-------g~~~~~~~~~~-~~~t~~----------~~~~~--------------~- 63 (363)
.+..+|+|+|.+|+||||++..|+ |.......... ++.... ..+.. +
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345689999999999999998887 44321111111 000000 00000 0
Q ss_pred Eee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEE
Q 017924 64 VLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV 142 (363)
Q Consensus 64 ~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~ 142 (363)
... .++.+.||||||.... +..+..++...... ..++.+++|+++.... . .+..+.. +.... .-.-+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~~--~~p~~vllVvda~~g~--~---~~~~~~~-f~~~l-~i~gv 245 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHAS--INPVETLFVVDAMTGQ--D---AANTAKA-FNEAL-PLTGV 245 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHHH--SCCSEEEEEEETTBCT--T---HHHHHHH-HHHHS-CCCCE
T ss_pred HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHHh--hcCcceeEEeecchhH--H---HHHHHHH-HhccC-CCeEE
Confidence 001 3556889999997652 22333344333221 2568888888876221 1 2222222 22111 12457
Q ss_pred EEeCCCCCCc
Q 017924 143 VFTGGDDLED 152 (363)
Q Consensus 143 v~n~~D~~~~ 152 (363)
|+||+|....
T Consensus 246 VlnK~D~~~~ 255 (433)
T 2xxa_A 246 VLTKVDGDAR 255 (433)
T ss_dssp EEECTTSSSC
T ss_pred EEecCCCCcc
Confidence 8999997644
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.9e-06 Score=67.97 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+..++|+|+||||||||++.|+|..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999754
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.6e-06 Score=73.75 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 456999999999999999999999865
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=4.9e-06 Score=67.60 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++..++|+|+||||||||++.|+|...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3557999999999999999999998653
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.91 E-value=4.3e-06 Score=68.05 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
++..++|+|+||||||||++.|+|..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999754
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.91 E-value=5.4e-06 Score=66.78 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
++..|+|+|+||||||||++.|+|..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35689999999999999999999763
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=5.1e-05 Score=71.07 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..++|+|+||||||||+++|+|...
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4689999999999999999999876
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.88 E-value=6.5e-06 Score=68.76 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+..++|+|+||||||||+++|+|..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999999999875
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.87 E-value=6.4e-06 Score=66.56 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=24.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++..|+|+|+||||||||++.|+|...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999999997754
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.86 E-value=2.4e-05 Score=69.71 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
....|+|+|++|+||||++..|++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988743
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.86 E-value=9.8e-06 Score=74.89 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..++..++|+|+||||||||+++|+|...
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 35667999999999999999999999865
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=8.2e-06 Score=63.66 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
++..++|+|+||||||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 456899999999999999998653
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=7.9e-06 Score=64.34 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..|+|+|++|||||||++.|++..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998754
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.82 E-value=9.8e-06 Score=64.43 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
++..|+|+|+||||||||++.|+|.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999976
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=8.2e-06 Score=66.05 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++..|+|+|++|||||||++.|+|..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999999764
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=2.7e-05 Score=68.04 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..|+|+|+||||||||+++|+|...
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 456999999999999999999987654
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00019 Score=61.08 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+..|+|+|++|+||||++..|++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998754
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.80 E-value=8.5e-06 Score=64.48 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+|+|+|+||||||||++.|+|...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4799999999999999999998754
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.1e-05 Score=67.52 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++..|+|+|+||||||||+++|+|...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 4567999999999999999999998654
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1e-05 Score=68.76 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
++.+|+|+|+||||||||+++|+|..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45799999999999999999998653
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.6e-05 Score=74.46 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
-.++..++|+|+||||||||+++|+|...
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 35677999999999999999999999876
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.6e-05 Score=73.70 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=25.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++.+++|+|+||||||||+++|+|...
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667999999999999999999999765
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=97.73 E-value=1.4e-05 Score=69.28 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=27.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT 57 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~ 57 (363)
+..|+|+|+||||||||+++|+|... +..+.++..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~----~~~g~i~i~ 205 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP----KEERIISIE 205 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC----TTSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc----CCCcEEEEC
Confidence 45899999999999999999998765 444544443
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=97.71 E-value=1.6e-05 Score=69.82 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT 57 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~ 57 (363)
.+..|+|+|+||||||||+++|+|... +..+.++..
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~----~~~g~I~ie 209 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP----FDQRLITIE 209 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC----TTSCEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC----CCceEEEEC
Confidence 456999999999999999999998765 444444443
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=1.6e-05 Score=68.21 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=25.4
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
...+..|+|+|+||||||||++.|+|...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 35667999999999999999999998764
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=97.70 E-value=2.3e-05 Score=73.44 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=25.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++.+++|+|+||||||||+++|+|...
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 5667999999999999999999999865
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=9.6e-06 Score=82.86 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|||+||||||||+++|+|...
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999998765
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.66 E-value=2.1e-05 Score=69.39 Aligned_cols=27 Identities=41% Similarity=0.453 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 456999999999999999999998653
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=2.2e-05 Score=65.17 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
++..|+|+|+||||||||++.|+|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999875
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.65 E-value=1.5e-05 Score=65.44 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=17.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhh-ccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL-GRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~-g~~ 43 (363)
++..|+|+|+||||||||++.|+ |..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35689999999999999999999 764
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.62 E-value=3.1e-05 Score=62.47 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..|+|+|++|||||||++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998764
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.62 E-value=3.1e-05 Score=61.38 Aligned_cols=26 Identities=38% Similarity=0.763 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..|+|+|++|||||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998654
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.60 E-value=2.9e-05 Score=62.18 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..+..|+|+|++|||||||++.|++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999999864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=97.60 E-value=2.2e-05 Score=73.74 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 456999999999999999999998765
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=2.8e-05 Score=70.29 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..++|+|+||||||||+++|+|...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 5899999999999999999998654
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.59 E-value=2.7e-05 Score=61.74 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|+||||||||++.|++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999985
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.57 E-value=2.4e-05 Score=73.67 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|+|+||||||||+++|+|...
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 467999999999999999999998865
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00037 Score=68.39 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhh
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
.+..++|+|+||+|||||++.|.
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999983
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.57 E-value=3.8e-05 Score=61.78 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
++..|+|+|++|||||||++.|++..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998765
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=3.3e-05 Score=63.30 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+..++|+|+||||||||++.|+|...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999998543
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.54 E-value=2.9e-05 Score=70.20 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+.+++|+|+||||||||+++|+|...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 467999999999999999999998764
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=4.4e-05 Score=68.10 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++..|+|+|+||||||||+++|+|...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567899999999999999999998654
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=97.53 E-value=4e-05 Score=70.34 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=26.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
+..|+|+|+||||||||+++|+|... +..+.+++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~----~~~giiti 293 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP----PDAKVVSI 293 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC----TTCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC----CCCCEEEE
Confidence 45799999999999999999998764 44444444
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=5e-05 Score=62.27 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.8
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
...+..|+|+|.+|||||||++.|.|.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 355679999999999999999999865
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=4.4e-05 Score=65.55 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..+..|+|+|+||||||||++.|.|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998753
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00036 Score=60.83 Aligned_cols=77 Identities=9% Similarity=0.093 Sum_probs=47.7
Q ss_pred EEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCC--------CHHHHHHHHHHHHHhc
Q 017924 62 TTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF--------SQEEETAVHRLPNLFG 133 (363)
Q Consensus 62 ~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~--------~~~~~~~l~~~~~~~~ 133 (363)
.+.. ++..+.++||+|... +...+..++.+++++|||+|+++.- ...-...+.++...+.
T Consensus 187 ~~~~-~~~~l~iwDt~GQe~-----------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~ 254 (353)
T 1cip_A 187 HFTF-KDLHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254 (353)
T ss_dssp EEEE-TTEEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred EEee-CCeeEEEEeCCCchh-----------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc
Confidence 3444 577889999999543 3344556778999999999988310 0111223334444332
Q ss_pred cc--cccceEEEEeCCCCC
Q 017924 134 KN--VFDYMIVVFTGGDDL 150 (363)
Q Consensus 134 ~~--~~~~~i~v~n~~D~~ 150 (363)
.. ...+++|+.||.|+.
T Consensus 255 ~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 255 NKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp CGGGTTSEEEEEEECHHHH
T ss_pred CccccCCcEEEEEECcCch
Confidence 11 123899999999975
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.50 E-value=5.4e-05 Score=62.78 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhh---cccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL---GRKA 44 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~---g~~~ 44 (363)
...|+|+|+||||||||++.|+ |...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 3589999999999999999999 6543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.50 E-value=2.6e-05 Score=76.27 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+.+++|+|+||||||||+++|+|...
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346999999999999999999999865
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.49 E-value=4.8e-05 Score=59.88 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..++|+|+||||||||+++|.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 48899999999999999998653
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=6.6e-05 Score=58.66 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.++..|+|+|.+||||||+++.|.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 34568999999999999999999754
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=4.2e-05 Score=67.44 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
+.+++|+|+||||||||++.|+|...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46999999999999999999998754
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.47 E-value=5.1e-05 Score=59.15 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..|+|+|.+|||||||++.|++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998653
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=6e-05 Score=60.33 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++..|+|+|++|||||||++.|.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998665
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00038 Score=68.11 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+..++|+|+||+|||||++.|.+.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHH
Confidence 3568999999999999999998643
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=5.3e-05 Score=65.96 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=24.7
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..+.+++|+|+||||||||++.|+|...
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567999999999999999999998754
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.001 Score=58.25 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=42.9
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCC---------HHHHHHHHHHHHHhccc--
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS---------QEEETAVHRLPNLFGKN-- 135 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~---------~~~~~~l~~~~~~~~~~-- 135 (363)
++..+.++||+|.. .+...+..++.++++++||+|++ ... ..-...+.++...+...
T Consensus 199 ~~~~l~i~Dt~Gq~-----------~~r~~w~~~f~~~~~iIfv~dls-~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 199 KNVPFKMVDVGGQR-----------SERKRWFECFDSVTSILFLVSSS-EFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETT-CTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CCeEEEEEeccchh-----------hhhhhHHHHhCCCCEEEEEEECc-cccccccccccccHHHHHHHHHHHHhcchhh
Confidence 57788999999953 34444556678999999999998 321 11122233333333211
Q ss_pred cccceEEEEeCCCCC
Q 017924 136 VFDYMIVVFTGGDDL 150 (363)
Q Consensus 136 ~~~~~i~v~n~~D~~ 150 (363)
...+++|++||.|+.
T Consensus 267 ~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 267 SNVSIILFLNKTDLL 281 (362)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred CCCCEEEEEEChhhh
Confidence 123899999999975
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=6e-05 Score=66.41 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++..|+|+|+||||||||+++|+|...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567899999999999999999997643
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=8.9e-05 Score=56.18 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
....+|+|+||+|||||+++|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999985
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.38 E-value=6.9e-05 Score=56.77 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+..++|+|++|+|||||+++|++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999997654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00011 Score=61.09 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhh
Q 017924 17 NGERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
..+..|+|+|++||||||+++.|+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345799999999999999999998
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.38 E-value=3.9e-05 Score=59.55 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..|+|+|++|||||||++.|+|...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3799999999999999999997754
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00012 Score=63.19 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..++|+|.+|||||||+|.|+|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 478999999999999999999764
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.30 E-value=1.8e-05 Score=64.31 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..++|+|+||||||||+++|+|...
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcccc
Confidence 3578999999999999999998765
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=9.3e-05 Score=58.10 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
+..++|+|++|+|||||+++|++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999987653
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00015 Score=62.11 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.....|+|+|++|||||||++.|.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344689999999999999999998654
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00013 Score=58.44 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..+..|+|+|.+|||||||++.|.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445799999999999999999998654
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00011 Score=66.05 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=24.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..+.+++|+|+||||||||++.|+|...
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4567999999999999999999998764
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.028 Score=55.28 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..++|+|++|+|||||++.|++..
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998654
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00013 Score=58.49 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 017924 21 TVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g 41 (363)
+|+|+|.+||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999999986
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0026 Score=56.81 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.-|+|.|++|+|||+|.++|++..
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 689999999999999999998654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00014 Score=71.18 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
.+.+++|+|+||||||||+++|+|
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999985
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00016 Score=59.00 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+|+|+|.+||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999864
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00018 Score=57.80 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|.+||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0025 Score=56.11 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.-|++.|++|+|||+|.++|++...
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CceEEeCCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999986643
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00076 Score=59.07 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.++|+|++|+|||||+++|++.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999874
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00022 Score=57.33 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+..|+|+|.+|||||||++.|.+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998753
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0002 Score=57.51 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..|+|+|++|||||||++.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999997543
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0002 Score=62.93 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
..++|+|+||||||||+++|+
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999987
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0029 Score=55.98 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.-|+|.|++|+|||+|.++|++...
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCceECCCCchHHHHHHHHHHHhC
Confidence 5799999999999999999996643
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.13 E-value=7e-05 Score=67.32 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
+.++|+|+||||||||+++|.+
T Consensus 61 G~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 61 GFCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp SEEEEEESHHHHHHHHTHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3999999999999999999853
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0015 Score=64.92 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
+..++|+|+||+|||||++.| |...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 578999999999999999999 7654
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00031 Score=56.22 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
...+|+|+||+|||||+++|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 688999999999999999984
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.058 Score=46.04 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.....+.|.|++|+|||++++.++...
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344689999999999999999998554
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00023 Score=59.97 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEcCCCCchHHHHHHhhccc
Q 017924 22 VVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~ 43 (363)
|+|+|+||+|||||+++|+|..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 9999999999999999999754
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0042 Score=55.33 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.-|+|.|++|+|||+|+++|++..
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999998654
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00028 Score=57.73 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+..++|+|+||+|||||++.|++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998543
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00031 Score=56.07 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+...|+|+|.+||||||+.+.|++.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999854
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00028 Score=60.21 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+..++|+|+||+|||||++.|+|...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999987654
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00035 Score=55.91 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|.+||||||+.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999754
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00043 Score=58.67 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.....|+|+|.+|||||||++.|.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567999999999999999999986543
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00037 Score=54.10 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..|+|+|.+|+|||||++.|++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998653
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00027 Score=72.32 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+|+|+|+||||||||+++|+|...
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 456999999999999999999998764
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00039 Score=54.54 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
-|+|+|++|||||||++.|+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999999754
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00043 Score=60.27 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
...+|+|+||+|||||+++|+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 677899999999999999974
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00043 Score=54.16 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..|+|+|.+||||||+++.|.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998643
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00041 Score=59.97 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
..++|+|+||+|||||+++|.
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 489999999999999999987
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00039 Score=67.18 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++..++|+|+||+|||||+++|+|..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 355789999999999999999998753
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00046 Score=60.24 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..++|+|+||+|||||+++|.+
T Consensus 27 g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHH
Confidence 4899999999999999999974
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0048 Score=54.53 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=45.5
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCC---C------CCHHHHHHHHHHHHHhccc--
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN---R------FSQEEETAVHRLPNLFGKN-- 135 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~---~------~~~~~~~~l~~~~~~~~~~-- 135 (363)
++..+.++||.|... +...+..++.+++++++|+|+++ . ... -.....++..++...
T Consensus 215 ~~v~l~iwDtaGQe~-----------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns-~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 215 DKVNFHMFDVGGQRD-----------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNR-LQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TTEEEEEEEECCSGG-----------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBH-HHHHHHHHHHHHTCTTC
T ss_pred CCccceecccchhhh-----------hhhhhHhhccCCCEEEEEEECcccccccccccccch-HHHHHHHHHHHHhcccC
Confidence 567889999999543 33445566789999999999983 0 111 112233343333211
Q ss_pred cccceEEEEeCCCCC
Q 017924 136 VFDYMIVVFTGGDDL 150 (363)
Q Consensus 136 ~~~~~i~v~n~~D~~ 150 (363)
...+++||.||+|+.
T Consensus 283 ~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 283 RTISVILFLNKQDLL 297 (402)
T ss_dssp SSCCEEEEEECHHHH
T ss_pred CCCeEEEEEEChhhh
Confidence 123899999999975
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0056 Score=54.71 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.-|+|.|++|+|||+|.++|++...
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CceEeeCCCCCcHHHHHHHHHhccC
Confidence 6899999999999999999986643
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00052 Score=60.29 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+..|+|+|++|+|||||+++|+|.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999864
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00059 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g 41 (363)
+..|+|+|.+||||||+.+.|+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999973
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00047 Score=57.36 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEcCCCCchHHHHHHhhccc
Q 017924 22 VVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~ 43 (363)
|+|+|++|+|||||+++|++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998654
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00074 Score=53.17 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..|+|+|.+||||||+++.|.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998654
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00053 Score=61.85 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+..++|+|+||+|||||+++|.+-.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4689999999999999999997644
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00051 Score=56.76 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+.+|+|+|.+||||||+.+.|++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998643
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00062 Score=52.76 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.|+|+|.+||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999744
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00044 Score=66.11 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhh
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
.+..++|+|+||||||||++.|+
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTTH
T ss_pred CCCEEEEEeeCCCCHHHHHHHHH
Confidence 35689999999999999998764
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0007 Score=52.59 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCchHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSI 39 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l 39 (363)
..|+|+|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00067 Score=55.87 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+..++|+|++|+|||||+..|++.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999999999874
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00073 Score=54.69 Aligned_cols=24 Identities=13% Similarity=-0.015 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
.+..++|+|++|+|||||+..|++
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00059 Score=65.56 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+..++|+|+||+|||||++.|+|-.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 5689999999999999999998754
|
| >3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0011 Score=60.27 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHh
Q 017924 120 EEETAVHRLPNLF 132 (363)
Q Consensus 120 ~~~~~l~~~~~~~ 132 (363)
.....++.+..++
T Consensus 187 ~~~~al~~~~~l~ 199 (449)
T 3iot_A 187 GAKAGLTFLVDLI 199 (449)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555554
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0033 Score=56.08 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.-|+|.|++|+|||+|.++|++..
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHHh
Confidence 589999999999999999998664
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00061 Score=59.20 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..++|+|++|+|||||+++|+|..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999999765
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00063 Score=57.41 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEcCCCCchHHHHHHhhccc
Q 017924 22 VVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~ 43 (363)
|+|+|++|+|||||+++|++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 9999999999999999998654
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0012 Score=53.95 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..+..|+|.|.+||||||+++.|....
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998554
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00048 Score=63.65 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+..|+|+|.+|||||||+++|++...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 457899999999999999999997754
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00084 Score=55.14 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+.+|+|+|.+||||||+.+.|++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4479999999999999999999853
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00099 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999754
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00074 Score=57.04 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+..++|+|+||+|||||+..|++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999864
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00099 Score=51.99 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4799999999999999999985
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00097 Score=52.62 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.012 Score=48.92 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|++|+|||+|+++|+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999854
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0019 Score=52.92 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..++|.|++|+|||||++.++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999997543
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0012 Score=51.77 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+.+|+|+|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999754
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0011 Score=53.74 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
....|+|+|..||||||+.+.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999974
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.001 Score=53.16 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.|+|+|..||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999854
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0013 Score=55.75 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
.....|+|+|++|||||||.+.|+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999974
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00089 Score=61.98 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCchHHHHHH--hhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNS--ILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~--l~g~~ 43 (363)
.+..++|+|+||||||||++. +.|..
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999 45543
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0009 Score=63.95 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=17.2
Q ss_pred CccEEEEEcCCCCchHHHH
Q 017924 18 GERTVVLLGRTGNGKSATG 36 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli 36 (363)
++..++|+|+||||||||+
T Consensus 43 ~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 43 RGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHh
Confidence 4569999999999999996
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=52.18 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g 41 (363)
+..|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999974
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0079 Score=54.73 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
...++|+|++|+|||++++.|+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998553
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0011 Score=51.59 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+|+|+|.+||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999744
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0018 Score=51.67 Aligned_cols=26 Identities=19% Similarity=0.435 Sum_probs=22.0
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhc
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
+.....|+|+|..||||||+.+.|+.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34446899999999999999999973
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.025 Score=44.93 Aligned_cols=69 Identities=6% Similarity=-0.021 Sum_probs=38.6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCC
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~ 147 (363)
.+.+.|+|+|+.... .....+. ..|.+++++..+ ..+......++.+..........++.+|+|+.
T Consensus 75 ~yD~viiD~~~~~~~---------~~~~~l~----~ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV---------ITSAAVM----VSDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSSH---------HHHHHHH----HCSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCCH---------HHHHHHH----HCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 456789999985531 1122222 247888888877 44433344455554432111112558899999
Q ss_pred CCC
Q 017924 148 DDL 150 (363)
Q Consensus 148 D~~ 150 (363)
|..
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 854
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0012 Score=54.90 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.|+|+|++|||||||.+.|++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999754
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0016 Score=52.00 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+..|+|+|..||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999743
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0013 Score=52.88 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..|+|+|.+||||||+.+.|.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999997543
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0014 Score=51.40 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|.+||||||+.+.|+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.016 Score=51.23 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchHHHHHHhhccc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++|+|++|+|||||++.+++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998654
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0015 Score=52.02 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
...|+|+|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 368999999999999999999744
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=57.94 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
+.++|+|+||+|||||+.+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 688999999999999999974
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0017 Score=52.50 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g 41 (363)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999974
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0017 Score=49.92 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..|+|+|.+|+|||||++.|+...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 579999999999999999998543
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.015 Score=50.61 Aligned_cols=69 Identities=9% Similarity=0.057 Sum_probs=42.3
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecC----------CCCCHHHHHHHHHHHHHhccc--c
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT----------NRFSQEEETAVHRLPNLFGKN--V 136 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~----------~~~~~~~~~~l~~~~~~~~~~--~ 136 (363)
..+.++||.|... +......++.+++++++|+|++ +.-+ -.....++..++... .
T Consensus 183 v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s--~~~~~~~~~~i~~~~~~~ 249 (354)
T 2xtz_A 183 EVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNR--MMETKELFDWVLKQPCFE 249 (354)
T ss_dssp -EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBH--HHHHHHHHHHHHTCGGGS
T ss_pred eeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhH--HHHHHHHHHHHHhccccC
Confidence 5688999999643 3334456678999999999985 1111 112223333333211 1
Q ss_pred ccceEEEEeCCCCC
Q 017924 137 FDYMIVVFTGGDDL 150 (363)
Q Consensus 137 ~~~~i~v~n~~D~~ 150 (363)
..+++||.||+|+.
T Consensus 250 ~~piiLvgNK~DL~ 263 (354)
T 2xtz_A 250 KTSFMLFLNKFDIF 263 (354)
T ss_dssp SCEEEEEEECHHHH
T ss_pred CCeEEEEEECcchh
Confidence 23899999999975
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0012 Score=57.54 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..++|+|+||+|||||++.|++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998764
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0015 Score=50.96 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
...|+|+|.+||||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3579999999999999999997
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0017 Score=52.10 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+..|+|.|..||||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999743
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0015 Score=51.64 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.|+|+|..||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999743
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0017 Score=51.39 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999863
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0019 Score=51.88 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+..|+|+|..||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999743
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0021 Score=51.21 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.7
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
.....|+|+|..||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4446899999999999999999974
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.013 Score=49.31 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|.|++|+|||+|+++|++.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999999999754
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0017 Score=52.45 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 017924 21 TVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g 41 (363)
+|+|+|..||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999963
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0015 Score=54.26 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.....|+|+|.+||||||+.+.|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999754
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0018 Score=51.25 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g 41 (363)
...|+|+|..||||||+.+.|+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999973
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0021 Score=52.59 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=22.4
Q ss_pred ccCCCCCCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+.+-.....+|+|+|..||||||+.+.|+..
T Consensus 8 ~p~~~~~~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 8 EPVPESPKGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp ------CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34434445578999999999999999999743
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0019 Score=52.51 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
...|+|+|++||||||+.+.|...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999743
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.037 Score=44.31 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.++|.|+.|+|||+|++.++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999754
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0019 Score=52.18 Aligned_cols=21 Identities=38% Similarity=0.737 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 017924 21 TVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g 41 (363)
+|+|+|..||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999963
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.00083 Score=54.14 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.|+|+|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.033 Score=47.87 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
...|+|+|++|+|||+|+++|+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3679999999999999999998543
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0024 Score=51.41 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+..|+|+|..||||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999743
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0024 Score=49.17 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 017924 21 TVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g 41 (363)
+|+|+|..||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999974
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.003 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|..||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999963
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0024 Score=52.05 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|..||||||+.+.|+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999973
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0031 Score=51.94 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
...+|+|+|..||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999973
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0026 Score=50.49 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|..||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0025 Score=51.72 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|..||||||+.+.|+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999743
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0022 Score=50.15 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=16.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999973
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.01 Score=52.02 Aligned_cols=97 Identities=8% Similarity=0.092 Sum_probs=58.5
Q ss_pred HHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcc--hhhHHHHhccCCCchH
Q 017924 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFLGHECPKPL 169 (363)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~--~~~l~~~~~~~~~~~~ 169 (363)
.+.+.+.......+++++|+|+.+ .+..+...+...++. .++++|+||+|+.... ...+.+++
T Consensus 58 ~f~~~l~~i~~~~~~il~VvD~~d----~~~~~~~~l~~~~~~---~p~ilV~NK~DL~~~~~~~~~~~~~l-------- 122 (368)
T 3h2y_A 58 DFLRILNGIGKSDALVVKIVDIFD----FNGSWLPGLHRFVGN---NKVLLVGNKADLIPKSVKHDKVKHWM-------- 122 (368)
T ss_dssp HHHHHHHHHHHSCCEEEEEEETTS----HHHHCCTTHHHHSSS---SCEEEEEECGGGSCTTSCHHHHHHHH--------
T ss_pred HHHHHHHHHhccCcEEEEEEECCC----CcccHHHHHHHHhCC---CcEEEEEEChhcCCcccCHHHHHHHH--------
Confidence 344444444456789999999872 123344455555543 3899999999997541 11233332
Q ss_pred HHHHHhcCCc--eEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 170 KEILQLCDNR--CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 170 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.......+.+ .+ ...|+.++.++.+|++.+....
T Consensus 123 ~~~~~~~g~~~~~v-----~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 123 RYSAKQLGLKPEDV-----FLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHTTCCCSEE-----EECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccE-----EEEeCCCCcCHHHHHhhhhhhc
Confidence 2233444431 11 1457888899999999887654
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0026 Score=49.17 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|..||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999974
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0023 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..|+|+|++|+|||||+++|++..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 469999999999999999998653
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0026 Score=49.81 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
.+|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0028 Score=51.11 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 017924 21 TVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g 41 (363)
+|+|+|..||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0031 Score=49.80 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.|+|.|..||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999743
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0033 Score=51.03 Aligned_cols=21 Identities=29% Similarity=0.700 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 017924 21 TVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g 41 (363)
.|+|+|.+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999963
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0089 Score=52.54 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..++|.|+.|+||||+++.++...
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999997543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0029 Score=58.52 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+..++|+|+||+|||||++.|+|...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999997654
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.004 Score=51.88 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|.+||||||+.+.|...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999743
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.014 Score=48.85 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
...|+|+|++|+|||+|+++|+..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999999999854
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0039 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g 41 (363)
...|+|+|..||||||+.+.|..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999974
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.004 Score=47.92 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
-+|+|+|..||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999974
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.021 Score=55.11 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.-|+|.|++|+|||+|.++|++..
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 679999999999999999998654
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0038 Score=50.40 Aligned_cols=22 Identities=27% Similarity=0.518 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
.+|+|+|..||||||+.+.|+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999964
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.015 Score=56.55 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
....++|+|++|+|||++++.|+...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999998654
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0029 Score=53.57 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=18.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
....|+|.|..||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0039 Score=49.80 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.|+|.|.+||||||+.+.|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999753
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0054 Score=48.17 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+..|+|+|++|+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998743
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0047 Score=49.34 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+|+|+|++||||+|..+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999744
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.005 Score=51.00 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g 41 (363)
...|+|.|..||||||+.+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999974
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.033 Score=49.33 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
...|+|+|++|+|||+|+++|+..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999744
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0059 Score=47.82 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
...|+|+|+.|+|||||++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999997543
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0058 Score=51.49 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
...|+|+|..||||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0054 Score=50.42 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=18.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
+..++|+|++|+|||||+..++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999976654
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0066 Score=48.81 Aligned_cols=23 Identities=22% Similarity=0.595 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|.|+|++||||+|..+.|+..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999999744
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.033 Score=47.40 Aligned_cols=87 Identities=13% Similarity=0.099 Sum_probs=48.5
Q ss_pred ccCCCccEEEEEeecCCCC-CHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 99 MAKDGIHAFLVVFSVTNRF-SQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~-~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.++.++|++++|+|+++.. +.... .++..+.. .. .++++|+||+|+... ...++ ...+....
T Consensus 80 ~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~--~piilv~NK~DL~~~--~~v~~---------~~~~~~~~ 143 (301)
T 1u0l_A 80 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NE--LETVMVINKMDLYDE--DDLRK---------VRELEEIY 143 (301)
T ss_dssp TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TT--CEEEEEECCGGGCCH--HHHHH---------HHHHHHHH
T ss_pred cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CC--CCEEEEEeHHHcCCc--hhHHH---------HHHHHHHH
Confidence 3456899999999998443 33332 23333322 12 389999999998754 22211 11122222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
...+ ....+|++++.++.+++..+.
T Consensus 144 ~~~~----~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 144 SGLY----PIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp TTTS----CEEECCTTTCTTHHHHHHHHS
T ss_pred hhhC----cEEEEECCCCcCHHHHHHHhc
Confidence 2111 112567777788888776643
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0071 Score=51.65 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|++|||||||...|+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0024 Score=61.86 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCchHHHHHH-hhc
Q 017924 19 ERTVVLLGRTGNGKSATGNS-ILG 41 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~-l~g 41 (363)
+..++|+|.||||||||++. |+|
T Consensus 523 Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 523 GVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp SSEEEEECCTTSSHHHHCCCCCHH
T ss_pred CCEEEEEcCCCcCHHHHHHHHHHH
Confidence 46899999999999999996 654
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0067 Score=48.25 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..|+|+|++|+|||+|+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998554
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0062 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.423 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
...|+|+|++|+|||+|+++|++..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh
Confidence 3579999999999999999998543
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0068 Score=49.51 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
....|+|+|++|+|||||++.|+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998554
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0022 Score=59.29 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
+..+|+|+||+|||||+++|.
T Consensus 61 g~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 61 GFCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp SEEEEEESHHHHHHHHTHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 588999999999999999984
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.007 Score=52.25 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
...|+|+|.+|+||||+.+.|++..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3469999999999999999998654
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.008 Score=51.55 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..|+|+|++|+|||||...|+...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 479999999999999999998553
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0058 Score=56.69 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
++..++|+|++|+|||||+++|++..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998654
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0064 Score=53.84 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
+..++|+|++|+|||||+..|+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHH
Confidence 4589999999999999999654
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0077 Score=51.01 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|++|+|||||...|+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 57899999999999999999744
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.017 Score=45.79 Aligned_cols=103 Identities=10% Similarity=0.083 Sum_probs=54.9
Q ss_pred HHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccc---cccceEEEEeCC-CCCCcchhhHHHHhccCCCch
Q 017924 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN---VFDYMIVVFTGG-DDLEDHEKTLEDFLGHECPKP 168 (363)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~i~v~n~~-D~~~~~~~~l~~~~~~~~~~~ 168 (363)
++..+..++.+.|++|||+|.+++-..+.+..+..+..++..+ ...+++|+.||. |.... ....+....
T Consensus 115 lRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e~----- 187 (227)
T 3l82_B 115 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHE----- 187 (227)
T ss_dssp --CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHHH-----
T ss_pred HHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHHH-----
Confidence 4444445567889999999986332222444444444433222 123788888985 55433 222222222
Q ss_pred HHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+. +......+++ ..+++.++.++.+-+++|...+
T Consensus 188 L~--L~~l~R~W~I----q~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 188 LH--LNLLNHPWLV----QDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp TT--GGGGCSCEEE----EEEETTTCTTHHHHHHHHTTTT
T ss_pred cC--CcCCCCCEEE----EEeECCCCcCHHHHHHHHHHHH
Confidence 11 0111233333 3567888899999888876544
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.052 Score=46.13 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=31.7
Q ss_pred cCCCccEEEEEeecCCC-CCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 100 AKDGIHAFLVVFSVTNR-FSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~-~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.+.++|.+++|+|+++. ++.... .++..+.. .+ .++++|+||+|+...
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-~~----~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-FK----VEPVIVFNKIDLLNE 125 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-TT----CEEEEEECCGGGCCH
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-CC----CCEEEEEEcccCCCc
Confidence 45688999999999844 354432 23333322 12 289999999999754
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0036 Score=61.11 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
+..++|+|.||||||||++.|+
T Consensus 650 Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 650 GTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SSEEECCBCTTSSHHHHHTTTH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 4589999999999999999864
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0059 Score=54.24 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..++|+|++|+|||||++.|++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998654
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0076 Score=51.84 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|++|||||||...|+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 47999999999999999998744
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0077 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0079 Score=51.09 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
...|+|+|++|+|||||+++|++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 468999999999999999999854
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.007 Score=47.14 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=0.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhh
Q 017924 17 NGERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
.....|+|+|++|+|||+|++.++
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHH
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 363 | ||||
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 3e-28 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 1e-07 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 5e-06 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 1e-04 | |
| d1jvra_ | 137 | a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell | 0.004 |
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 108 bits (271), Expect = 3e-28
Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 24/222 (10%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
T++++G+ G GKS+T NSI+G + S S + + + G +N+IDTPG
Sbjct: 32 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR--AGFTLNIIDTPG 89
Query: 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVF 137
L + ++ I + I L V + R ++ + + FGK ++
Sbjct: 90 LIEGGYINDMALNIIKSF--LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIW 147
Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQV 197
+ IV T ++F + + L ++++ +
Sbjct: 148 NKAIVALTHAQFSPPDGLPYDEFF-SKRSEALLQVVRSGASLKKDA-------------- 192
Query: 198 RQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKE 239
S + V+++N G+ ++ L + A + L +
Sbjct: 193 --QASDIPVVLIENSGRCNKND--SDEKVLPNGIAWIPHLVQ 230
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.5 bits (120), Expect = 1e-07
Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 17/166 (10%)
Query: 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDGQVVNVI 74
+ V + G TG+GKS+ N++ G + A +GV + E + V
Sbjct: 53 DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 112
Query: 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK 134
D PG+ + + + K + + ++ ++ + + + ++ K
Sbjct: 113 DLPGIGSTNFPPDTY---------LEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKK 163
Query: 135 NVFDYMIVVFTGGD-DLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179
V T D D+ + E K L++I C N
Sbjct: 164 EF----YFVRTKVDSDITNEADGEPQTFDKE--KVLQDIRLNCVNT 203
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 44.5 bits (104), Expect = 5e-06
Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 3/147 (2%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
V L+G GKS + + K A T + DG+ + D PGL
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60
Query: 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140
+ + +G + ++ + I + + + R ++ +++ + + + +
Sbjct: 61 EGAHQGVGLGHQFLRHIERT-RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 119
Query: 141 IVVFTGGDDLEDHEKTLEDFLGHECPK 167
++ D+ + + LE F
Sbjct: 120 QIIVANKMDMPEAAENLEAFKEKLTDD 146
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 40.4 bits (93), Expect = 1e-04
Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 21/196 (10%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
V L+G GKS+ ++ A T + + + + + + D PG+ +
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141
++ + +G E ++ + + ++ + P L + +
Sbjct: 62 GASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALN 121
Query: 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201
V D L E K L + L + T G +++ L
Sbjct: 122 KV---------------DLLEEEAVKALADALAREGLAVLPVSALTG---AGLPALKEAL 163
Query: 202 -SLVNSVIVQNGGQPY 216
+LV S +P
Sbjct: 164 HALVRSTPPPEMPKPV 179
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 363 | |||
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.88 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.84 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.77 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.76 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.75 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.74 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.73 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.72 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.71 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.71 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.66 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.66 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.66 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.64 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.64 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.63 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.62 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.62 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.61 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.6 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.6 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.58 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.58 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.57 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.57 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.55 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.53 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.51 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.51 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.51 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.51 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.5 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.5 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.49 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.49 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.49 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.48 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.48 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.47 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.47 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.47 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.46 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.46 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.45 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.45 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.44 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.43 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.41 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.4 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.4 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.4 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.39 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.38 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.37 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.33 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.32 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.3 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.24 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.23 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.21 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.12 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.08 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.07 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.02 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 98.97 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 98.94 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 98.83 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.83 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.83 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.81 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.77 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.75 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.75 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.74 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 98.72 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 98.63 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 98.58 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 98.56 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 98.56 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 98.55 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 98.53 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 98.49 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 98.48 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 98.47 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.47 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 98.45 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.36 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.34 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 98.32 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.32 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.32 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.28 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 98.24 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 98.21 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 98.21 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 98.17 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 98.14 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 98.13 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 98.11 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 98.06 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 98.01 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.99 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.7 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.46 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.43 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.4 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.3 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.23 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.19 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.18 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.16 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 97.16 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.16 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.14 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.13 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.12 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 97.07 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.06 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.04 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.04 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.03 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.02 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.02 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.0 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.97 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.97 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.95 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.94 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.94 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.92 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.9 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.89 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.88 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.88 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.88 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.88 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.86 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.86 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.83 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.83 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.82 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.82 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.82 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.81 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 96.81 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.76 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.73 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.72 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.72 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.68 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.63 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.61 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.59 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.59 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.56 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.55 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.51 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.44 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.4 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.39 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.3 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.12 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.11 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.1 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.92 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.91 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.9 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.85 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.84 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.79 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.75 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.74 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.72 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.67 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.65 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.64 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.61 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.59 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.58 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.56 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 95.54 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.45 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.44 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.35 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.21 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.21 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.19 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.07 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.06 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.84 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 94.78 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.72 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.67 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.66 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.62 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 94.56 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.5 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 94.47 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.44 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.24 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.23 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.22 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.13 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 93.91 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.9 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 93.89 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 93.81 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.55 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 93.52 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 93.52 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.25 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 93.17 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 93.16 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.12 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.7 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.68 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 92.39 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 92.24 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.09 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.05 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 91.99 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.97 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 91.89 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.89 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 91.74 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.72 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 91.38 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 90.52 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 90.15 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 88.75 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 88.11 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 88.09 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.88 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 86.62 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 86.55 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 86.24 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 85.87 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 85.42 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 85.06 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 83.78 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 82.69 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.46 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.43 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.08 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 80.71 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 80.35 |
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.88 E-value=4.2e-22 Score=165.42 Aligned_cols=155 Identities=23% Similarity=0.314 Sum_probs=118.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|.+|+|||||+|+|+|+..|.+... .++|..+..+.+.. ++..++|+||||+.+.......+...+..+.
T Consensus 31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~-~~~T~~~~~~~~~~-~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~ 108 (257)
T d1h65a_ 31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPF-QSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL 108 (257)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-SCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCceeecCC-CCcceeEEEEEEEe-ccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence 458999999999999999999999998765443 34555666666666 8889999999999887655555555554443
Q ss_pred hccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
. ....|+++||+.++ .+++..+...++.+...||.++++++++|+||+|....++..+++++.. ....+..++..+
T Consensus 109 ~--~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~-~~~~l~~~i~~~ 185 (257)
T d1h65a_ 109 L--DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRSG 185 (257)
T ss_dssp T--TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHHH
T ss_pred h--cCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHh-hhHHHHHHHHHH
Confidence 2 34679999998875 5799999999999999999999999999999999987655677777654 222344455554
Q ss_pred C
Q 017924 177 D 177 (363)
Q Consensus 177 ~ 177 (363)
.
T Consensus 186 ~ 186 (257)
T d1h65a_ 186 A 186 (257)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=8.8e-20 Score=143.49 Aligned_cols=165 Identities=20% Similarity=0.175 Sum_probs=109.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce-eeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
++|+|||.+|+|||||+|+|+|...... +....++ ......... .+..++++||||+...... ....+...+.
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~--~~~~~tt~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~---~~~~~~~~~~ 79 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPI--SPRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDA---LGEFMDQEVY 79 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCC--CSSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSH---HHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceee--cccCCcccccccceeee-eeeeeeecccccccccccc---cchhcccccc
Confidence 5899999999999999999999865322 2222233 333333334 7788999999998764322 2233444444
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.+...+|++++|+|+++.++..+..++..+...... .|+++|+||+|+..... +.+.. +. ...+.
T Consensus 80 ~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~---~piilv~NK~Dl~~~~~----~~~~~-----~~---~~~~~ 144 (178)
T d1wf3a1 80 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVGK---VPILLVGNKLDAAKYPE----EAMKA-----YH---ELLPE 144 (178)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTT---SCEEEEEECGGGCSSHH----HHHHH-----HH---HTSTT
T ss_pred cccccccceeeeechhhhhcccccchhhheeccccc---hhhhhhhcccccccCHH----HHHHH-----HH---hhccc
Confidence 556788999999999877887777666666554332 38999999999876521 12221 11 22222
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
..++ ..|++.+.++.+|++.|.+.+.+
T Consensus 145 ~~~~-----~iSA~~~~gi~~L~~~i~~~lpe 171 (178)
T d1wf3a1 145 AEPR-----MLSALDERQVAELKADLLALMPE 171 (178)
T ss_dssp SEEE-----ECCTTCHHHHHHHHHHHHTTCCB
T ss_pred CceE-----EEecCCCCCHHHHHHHHHHhCCC
Confidence 2222 35888999999999998877644
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=3.1e-18 Score=134.79 Aligned_cols=167 Identities=14% Similarity=0.115 Sum_probs=103.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
.|+|||.+|||||||+|+|+|...... .....++...+.......+..+.++||||+.............+...
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~---- 76 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIA--PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRH---- 76 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEEC--CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcee--ccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHH----
Confidence 499999999999999999998875322 22334555555555554577889999999865321111111222222
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCce
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 180 (363)
....++++++++...............+..........++++|+||+|+... ..+++..+ .+...+..+
T Consensus 77 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~---------~~~~~~~~~ 145 (180)
T d1udxa2 77 IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALAD---------ALAREGLAV 145 (180)
T ss_dssp HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHH---------HHHTTTSCE
T ss_pred HHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhH--HHHHHHHH---------HHHhcCCeE
Confidence 2466899999987633222222233333222111222489999999999876 44443322 222223333
Q ss_pred EEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+ ..|++++.++++|++.|.+++..
T Consensus 146 ~------~iSA~tg~gid~L~~~i~~~l~~ 169 (180)
T d1udxa2 146 L------PVSALTGAGLPALKEALHALVRS 169 (180)
T ss_dssp E------ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred E------EEEcCCCCCHHHHHHHHHHHHhh
Confidence 3 46888999999999999888865
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.76 E-value=2.2e-17 Score=131.55 Aligned_cols=168 Identities=14% Similarity=0.172 Sum_probs=107.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHH--HHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF--VGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~~~~ 97 (363)
.+|+|+|.+|||||||+|+|+|..... ..+....++.... ... ....+.++|++|.......... ....+....
T Consensus 24 ~~I~lvG~~n~GKSTLin~L~g~~~~~-~~~~~~~~t~~~~-~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T d1svia_ 24 PEIALAGRSNVGKSSFINSLINRKNLA-RTSSKPGKTQTLN-FYI--INDELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC--------------CCEE-EEE--ETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCceE-Eeecccceeeecc-ccc--ccccceEEEEEeeccccccccccchhhhHHhhh
Confidence 489999999999999999999875311 1222222222221 121 2344557888887665444332 223333444
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
.......+++++++|+++.+...+...++.+... + .++++|+||+|.... ..+++++.. ++..+..-.
T Consensus 100 ~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~-~----~piivv~NK~D~~~~--~~~~~~~~~-----~~~~l~~~~ 167 (195)
T d1svia_ 100 ITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-G----IPVIVIATKADKIPK--GKWDKHAKV-----VRQTLNIDP 167 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGSCG--GGHHHHHHH-----HHHHHTCCT
T ss_pred hccccchhhhhhhhhccccccccccccccccccc-c----CcceechhhccccCH--HHHHHHHHH-----HHHHhcccC
Confidence 4555678999999999878888888888877653 2 289999999999866 666666555 544443322
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...++ ..|+.++.++++|++.|.+++
T Consensus 168 ~~~~~-----~~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 168 EDELI-----LFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TSEEE-----ECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCEE-----EEeCCCCCCHHHHHHHHHHHh
Confidence 22222 457788999999999988775
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=4.5e-18 Score=134.62 Aligned_cols=175 Identities=21% Similarity=0.221 Sum_probs=104.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH-HHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~ 97 (363)
..+|+|+|.+|+|||||+|+|+|......... ...+.......+.+ ++..+.++|+||+........ .........+
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 85 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPI-PGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 85 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCC-C------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcceeecc-cccccccceeeecc-CCceeeeeccCCccccccccccccccchhHHH
Confidence 48999999999999999999998765222222 22233333334444 788899999999854211000 0000000111
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
......+|++++++|+...+.......+..+... + .++++|+||+|........++++.+. +...+..+.
T Consensus 86 ~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~-~----~~~i~v~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~ 155 (186)
T d1mkya2 86 VDSIEKADVVVIVLDATQGITRQDQRMAGLMERR-G----RASVVVFNKWDLVVHREKRYDEFTKL-----FREKLYFID 155 (186)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSTTGGGCHHHHHHH-----HHHHCGGGT
T ss_pred HHHHhcCCEEEEeecccccchhhHHHHHHHHHHc-C----CceeeeccchhhhcchhhhhhhHHHH-----HHHHhcccC
Confidence 1112356899999999867777777666665543 3 28999999999876533344444333 333332222
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.. .....|++.+.++.+|++.|.+.++.
T Consensus 156 ~~-----~i~~vSa~~g~gv~~L~~~i~~~~~~ 183 (186)
T d1mkya2 156 YS-----PLIFTSADKGWNIDRMIDAMNLAYAS 183 (186)
T ss_dssp TS-----CEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CC-----eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 21 22356888999999999999887765
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.74 E-value=1.3e-17 Score=131.75 Aligned_cols=166 Identities=19% Similarity=0.183 Sum_probs=98.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHH----HHHHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF----VGKEIVK 95 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----~~~~~~~ 95 (363)
.|+|||.+|||||||+|+|+|+... .+... .|.. ...+.+ ..+.++||||++........ +...+..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~---~~~~~g~T~~--~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~ 73 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVR---RGKRPGVTRK--IIEIEW---KNHKIIDMPGFGFMMGLPKEVQERIKDEIVH 73 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCS---SSSSTTCTTS--CEEEEE---TTEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce---eeCCCCEeec--cccccc---ccceecccCCceeccccccccccccchhhhh
Confidence 6999999999999999999998642 22222 2322 222222 34568999998765544333 2333444
Q ss_pred HHhccCCCccEEEEEeecCC-----------CCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccC
Q 017924 96 CLGMAKDGIHAFLVVFSVTN-----------RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~ 164 (363)
++......+|++++++|+.+ .+...+...++.+... + .|+++|+||+|........+..+...
T Consensus 74 ~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~----~p~iiv~NK~D~~~~~~~~~~~~~~~- 147 (184)
T d2cxxa1 74 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL-D----IPTIVAVNKLDKIKNVQEVINFLAEK- 147 (184)
T ss_dssp HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT-T----CCEEEEEECGGGCSCHHHHHHHHHHH-
T ss_pred hhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc-C----CCEEEEEeeeehhhhHHHHHHHHHHH-
Confidence 44455567899999998741 2233334444444332 2 38999999999886522222221111
Q ss_pred CCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+...+......+ ...|++.+.++++|++.|.+.+++
T Consensus 148 ----~~~~~~~~~~~~------~~vSA~~g~gi~~L~~~i~~~l~e 183 (184)
T d2cxxa1 148 ----FEVPLSEIDKVF------IPISAKFGDNIERLKNRIFEVIRE 183 (184)
T ss_dssp ----HTCCGGGHHHHE------EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ----hcccccccCCeE------EEEECCCCCCHHHHHHHHHHHccC
Confidence 100000000111 145788899999999999887764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.73 E-value=4e-17 Score=127.93 Aligned_cols=166 Identities=19% Similarity=0.221 Sum_probs=102.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccccc-----CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA-----GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
.++|+|||++|||||||+|+|+|........ ...+.+.......+.+ .+..++++|++|.. .+
T Consensus 5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~d~~g~~-----------~~ 72 (179)
T d1wb1a4 5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA-----------DL 72 (179)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH-----------HH
T ss_pred CEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccccc-CCcccccccccccc-----------cc
Confidence 4789999999999999999999754311100 0111222222333344 67788999999832 34
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
.+....+....|++++++++........+..+..+.. .+. |+++|+||+|.... +........ ++.++
T Consensus 73 ~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~-~~~----p~iiv~NKiD~~~~--~~~~~~~~~-----~~~~~ 140 (179)
T d1wb1a4 73 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FNI----PIIVVITKSDNAGT--EEIKRTEMI-----MKSIL 140 (179)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CBCEEEECTTSSCH--HHHHHHHHH-----HHHHH
T ss_pred ccchhhhhhhccccccccccccccchhhhhhhhhhhh-cCC----cceeccccccccCH--HHHHHHHHH-----HHHHH
Confidence 4444445567899999999986777766666655544 232 89999999999876 443332222 33333
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
....... ..+....|++.+.++.+|++.|...+..
T Consensus 141 ~~~~~~~--~~~iv~iSA~~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 141 QSTHNLK--NSSIIPISAKTGFGVDELKNLIITTLNN 175 (179)
T ss_dssp HHSSSGG--GCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHhhcCC--CCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence 3321110 0122356889999999999999887754
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=7.9e-17 Score=125.47 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=98.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCC-ceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
+|+|+|.+|||||||+|.|+|..... .+.... |.......+.. ....+.++|++|+........ ..........
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~--~~~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~--~~~~~~~~~~ 76 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAI--VEDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDII--SQKMKEVTLN 76 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC----------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGCC--CHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcce--ecccCceeeccccccccc-cccccccccccceeeeecccc--cccccccccc
Confidence 79999999999999999999876521 122222 22222333333 677888999999876432111 1112222222
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
....+|+++++.+.+..+...+...+..+... +. |+++|+||+|+... ...+ . ..++......
T Consensus 77 ~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~-~~----pviiv~NK~Dl~~~--~~~~-~--------~~~~~~~~~~- 139 (171)
T d1mkya1 77 MIREADLVLFVVDGKRGITKEDESLADFLRKS-TV----DTILVANKAENLRE--FERE-V--------KPELYSLGFG- 139 (171)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-TC----CEEEEEESCCSHHH--HHHH-T--------HHHHGGGSSC-
T ss_pred ccccCcEEEEeecccccccccccccccccccc-cc----cccccchhhhhhhh--hhhH-H--------HHHHHhcCCC-
Confidence 33467899999998877888777777666643 32 89999999998744 2111 1 1112221111
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.....|++++.++++|++.|.+.+.+
T Consensus 140 -----~~i~iSAk~g~gid~L~~~i~~~l~e 165 (171)
T d1mkya1 140 -----EPIPVSAEHNINLDTMLETIIKKLEE 165 (171)
T ss_dssp -----SCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred -----CeEEEecCCCCCHHHHHHHHHHhCCC
Confidence 22356888999999999998887765
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=3.4e-17 Score=126.31 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=100.1
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+.+|+|+|.+|||||||+|+|+|..........+ .+.......+.. .+..+.++|++|+.+..... .........
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~---~~~~~~~~~ 75 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG-TTRDVLREHIHI-DGMPLHIIDTAGLREASDEV---ERIGIERAW 75 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTT-CCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHH---HHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceEeecccc-cccceEeeeeec-cCceeeeccccccccccccc---hhHHHHHHH
Confidence 4699999999999999999999887532222222 222222223334 67889999999988753222 222223333
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.++..+|+++++++............+..+....... .++++|+||+|+... .. .+.. ...
T Consensus 76 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~iilv~NK~Dl~~~--~~---~~~~------------~~~ 136 (161)
T d2gj8a1 76 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITGE--TL---GMSE------------VNG 136 (161)
T ss_dssp HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHCC--CC---EEEE------------ETT
T ss_pred HHHHhccccceeeccccccchhhhhhhhhhhhhcccc--cceeeccchhhhhhh--HH---HHHH------------hCC
Confidence 4455789999999987555555555544444433322 389999999997544 11 0111 111
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.- ....|++.+.++++|++.|.+
T Consensus 137 ~~-----~~~iSAk~~~gi~~L~~~l~~ 159 (161)
T d2gj8a1 137 HA-----LIRLSARTGEGVDVLRNHLKQ 159 (161)
T ss_dssp EE-----EEECCTTTCTTHHHHHHHHHH
T ss_pred Cc-----EEEEECCCCCCHHHHHHHHHh
Confidence 11 125688899999999988765
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.71 E-value=2.5e-16 Score=124.14 Aligned_cols=137 Identities=15% Similarity=0.142 Sum_probs=93.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc--------------cccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA--------------FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~--------------~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (363)
+..+|+++|+.++|||||+++|++... .....-..+.|.+.....+.+ .+..++++||||..
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~-~~~~~~~iDtPGh~--- 77 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHA--- 77 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHH---
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEe-ceeeEEeecCcchH---
Confidence 457999999999999999999975210 000112234566655556655 78899999999943
Q ss_pred CChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
.+.+.+..+...+|++++|+|+...+....+..+..+..+.. . ++++++||+|.... ...++.+.+.
T Consensus 78 --------~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~-~---~iIv~iNK~D~~~~-~~~~~~i~~~ 144 (196)
T d1d2ea3 78 --------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGV-E---HVVVYVNKADAVQD-SEMVELVELE 144 (196)
T ss_dssp --------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTC-C---CEEEEEECGGGCSC-HHHHHHHHHH
T ss_pred --------HHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcC-C---cEEEEEeccccccc-HHHHHHHHHH
Confidence 344555556677899999999987888777777777666432 2 78899999998754 1334444444
Q ss_pred CCCchHHHHHHhc
Q 017924 164 ECPKPLKEILQLC 176 (363)
Q Consensus 164 ~~~~~~~~~~~~~ 176 (363)
++.++..+
T Consensus 145 -----i~~~l~~~ 152 (196)
T d1d2ea3 145 -----IRELLTEF 152 (196)
T ss_dssp -----HHHHHHHT
T ss_pred -----HHHHHHHh
Confidence 55555544
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=2.3e-17 Score=127.15 Aligned_cols=156 Identities=18% Similarity=0.237 Sum_probs=95.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCC--hHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~ 97 (363)
++|+|+|.+|+|||||+|+|+|..........+ .+.......... .+..+.++||||+...... ...........
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~- 77 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG-TTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQE- 77 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSC-CSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeecccc-ccccceeEEEEe-CCeeEEeccccccccCCccHHHHHHHHHHHHH-
Confidence 489999999999999999999886532222222 222232333344 6788899999997543211 11111122222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
...+|++++|+|+++.....+......+. . .++++++|+.|.... ...++.... +.. .
T Consensus 78 ---~~~ad~ii~v~d~~~~~~~~~~~~~~~~~----~---~~~i~~~~k~d~~~~--~~~~~~~~~---------~~~-~ 135 (160)
T d1xzpa2 78 ---IEKADIVLFVLDASSPLDEEDRKILERIK----N---KRYLVVINKVDVVEK--INEEEIKNK---------LGT-D 135 (160)
T ss_dssp ---HHHCSEEEEEEETTSCCCHHHHHHHHHHT----T---SSEEEEEEECSSCCC--CCHHHHHHH---------HTC-S
T ss_pred ---HHhCCEEEEEEeCCCCcchhhhhhhhhcc----c---ccceeeeeeccccch--hhhHHHHHH---------hCC-C
Confidence 23569999999998677766655444332 1 278899999999866 333322221 111 1
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.. ....|++++.++++|++.|.+
T Consensus 136 ~~------~~~vSA~~g~gi~~L~~~I~k 158 (160)
T d1xzpa2 136 RH------MVKISALKGEGLEKLEESIYR 158 (160)
T ss_dssp TT------EEEEEGGGTCCHHHHHHHHHH
T ss_pred Cc------EEEEECCCCCCHHHHHHHHHh
Confidence 11 225688899999999887643
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.66 E-value=1.4e-15 Score=117.57 Aligned_cols=160 Identities=14% Similarity=0.061 Sum_probs=97.1
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|..|||||||++.|.+... . ....|.......+.. ++..+.++||+|.. .+.....
T Consensus 2 ~~ki~ivG~~~~GKTsLi~~l~~~~~----~-~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~-----------~~~~~~~ 64 (165)
T d1ksha_ 2 ELRLLMLGLDNAGKTTILKKFNGEDV----D-TISPTLGFNIKTLEH-RGFKLNIWDVGGQK-----------SLRSYWR 64 (165)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCCC----S-SCCCCSSEEEEEEEE-TTEEEEEEEECCSH-----------HHHTTGG
T ss_pred cEEEEEECCCCCCHHHHHHHHcCCCC----C-cccceEeeeeeeccc-cccceeeeecCcch-----------hhhhHHH
Confidence 47999999999999999999997654 1 122333344444444 77889999999932 3444445
Q ss_pred ccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
......+++++++|.++..+..+. ..+..+..... ....|+++|.||.|+... ...++.... +. .....
T Consensus 65 ~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~--~~~~~~~~~-----~~--~~~~~ 134 (165)
T d1ksha_ 65 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGA--LSCNAIQEA-----LE--LDSIR 134 (165)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGCC
T ss_pred hhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcc-cCCCceEEEEeccccccc--cCHHHHHHH-----HH--hhhhh
Confidence 566788999999998744333222 22222211111 112389999999998654 333322211 00 11112
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+.+. ...+|++++.++.++++.|.+.+
T Consensus 135 ~~~~~---~~~~Sa~~g~gv~e~~~~l~~~i 162 (165)
T d1ksha_ 135 SHHWR---IQGCSAVTGEDLLPGIDWLLDDI 162 (165)
T ss_dssp SSCEE---EEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCE---EEEEECCCCCCHHHHHHHHHHHH
Confidence 21111 13578889999999999876554
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.66 E-value=5.7e-16 Score=125.89 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=77.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEE-----------------eeCCcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-----------------LKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~-----------------~~~~~~~~l~DtpG~~~~ 82 (363)
.+|+|+|+.++|||||+|+|++.... ....+.++......... ..++..++++||||..+.
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f 83 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGSAVA--SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHS--CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CEEEEEeCCCccHHHHHHHHHhhcch--heecCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence 46999999999999999999876431 11112222111111110 114567899999997653
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
. .....+...+|++++|+|+...+.......+..+... +. |+++++||+|+...
T Consensus 84 ~-----------~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~----p~iivlNK~D~~~~ 137 (227)
T d1g7sa4 84 T-----------TLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-RT----PFVVAANKIDRIHG 137 (227)
T ss_dssp T-----------TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-TC----CEEEEEECGGGSTT
T ss_pred c-----------ccchhcccccceEEEEEecccCcccchhHHHHHhhcC-CC----eEEEEEECccCCCc
Confidence 2 1222344578999999999878999888888877764 32 89999999998754
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.64 E-value=1.1e-15 Score=121.67 Aligned_cols=136 Identities=15% Similarity=0.205 Sum_probs=92.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc---cccc------c------CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA---FKAS------A------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~---~~~~------~------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
+.++|+++|+.++|||||+++|++... .... . ...+.|.+.....+.+ ++..++|+||||..+.
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~-~~~~i~iiDtPGh~df 80 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY 80 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe-CCeEEEEEeCCCchhh
Confidence 357999999999999999999963311 0000 0 0124566666666667 8899999999997663
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~ 162 (363)
...+.+ +...+|++++|+|+...+....+..+..+... |- .++++++||+|+... .+.++.+.+
T Consensus 81 -------~~~~~~----~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~-gi---~~iiv~iNK~D~~~~-~~~~~~~~~ 144 (204)
T d2c78a3 81 -------IKNMIT----GAAQMDGAILVVSAADGPMPQTREHILLARQV-GV---PYIVVFMNKVDMVDD-PELLDLVEM 144 (204)
T ss_dssp -------HHHHHH----HHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TC---CCEEEEEECGGGCCC-HHHHHHHHH
T ss_pred -------HHHHHH----HHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEEecccCCC-HHHHHHHHH
Confidence 233333 33467999999999878888888887777664 32 157788999998754 133454555
Q ss_pred cCCCchHHHHHHh
Q 017924 163 HECPKPLKEILQL 175 (363)
Q Consensus 163 ~~~~~~~~~~~~~ 175 (363)
. ++..+..
T Consensus 145 ~-----i~~~l~~ 152 (204)
T d2c78a3 145 E-----VRDLLNQ 152 (204)
T ss_dssp H-----HHHHHHH
T ss_pred H-----HHHHHHh
Confidence 4 5555544
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.64 E-value=2.5e-15 Score=119.21 Aligned_cols=167 Identities=13% Similarity=0.172 Sum_probs=99.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccccccc-ccCCCCCceeeEeEEEEe----------------------eCCcEEEE
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVL----------------------KDGQVVNV 73 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~-~~~~~~~t~~~~~~~~~~----------------------~~~~~~~l 73 (363)
.+..+|+++|+.++|||||+|+|+|...... .....+.|.........+ .....+++
T Consensus 3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T d1kk1a3 3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence 3457999999999999999999997532110 011111222111111100 01245889
Q ss_pred EeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCC-CHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 74 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
+||||. ..+......+...+|++++++++.... ....+..+..+..+ +.. ++++++||+|....
T Consensus 83 iDtPGh-----------~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~~---~iiv~inK~D~~d~ 147 (195)
T d1kk1a3 83 IDAPGH-----------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQK---NIIIAQNKIELVDK 147 (195)
T ss_dssp EECSSH-----------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSCH
T ss_pred eccchh-----------hhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cCc---cceeeeecccchhh
Confidence 999993 334444444555679999999987554 34444555554443 332 68888999999865
Q ss_pred chhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 153 HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 153 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
......... +..++..+...... ....|+.++.++++|++.|.+.+
T Consensus 148 --~~~~~~~~~-----~~~~~~~~~~~~~~---iIpiSA~~G~ni~~Ll~~I~~~i 193 (195)
T d1kk1a3 148 --EKALENYRQ-----IKEFIEGTVAENAP---IIPISALHGANIDVLVKAIEDFI 193 (195)
T ss_dssp --HHHHHHHHH-----HHHHHTTSTTTTCC---EEECBTTTTBSHHHHHHHHHHHS
T ss_pred --HHHHHHHHH-----HHHHhccccCCCCe---EEEEECCCCCCHHHHHHHHHHHC
Confidence 444333333 44455443221111 12568999999999999887754
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.63 E-value=8.6e-17 Score=126.97 Aligned_cols=167 Identities=17% Similarity=0.124 Sum_probs=96.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
.|+|||++|||||||+|+|+|..... ......|+........+.++..+.++||||+.........+...+...+.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~--~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~-- 78 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKI--ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE-- 78 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEE--SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH--
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCce--ecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHH--
Confidence 69999999999999999999877522 22333455555555555466788999999974321112222233333332
Q ss_pred CCCccEEEEEeecC--CCCCHHHHH-HHHHHHHHhccc-cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 101 KDGIHAFLVVFSVT--NRFSQEEET-AVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 101 ~~~~~~~l~v~~~~--~~~~~~~~~-~l~~~~~~~~~~-~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
..+.++++++.. ......+.. ............ ..+|+++|+||+|.... ... +..+....
T Consensus 79 --~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~--~~~-----------~~~~~~~~ 143 (185)
T d1lnza2 79 --RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AEN-----------LEAFKEKL 143 (185)
T ss_dssp --HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHH-----------HHHHHHHC
T ss_pred --HhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH--HHH-----------HHHHHHHh
Confidence 345666666544 223332222 222222222211 23488999999998754 211 11122222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
...+ .....|+.++.++.+|++.|.+.+..
T Consensus 144 ~~~~----~v~~iSA~~g~Gi~~L~~~i~~~L~~ 173 (185)
T d1lnza2 144 TDDY----PVFPISAVTREGLRELLFEVANQLEN 173 (185)
T ss_dssp CSCC----CBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred ccCC----cEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 2111 23467889999999999999888754
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.62 E-value=1.2e-15 Score=119.27 Aligned_cols=163 Identities=18% Similarity=0.141 Sum_probs=94.7
Q ss_pred CCCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
.++....+|+|||..|||||||+|.|.+...-...+ +.......+.. .+..+.++|++|... +
T Consensus 11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~-----~~~~~~~~i~~-~~~~~~i~d~~g~~~-----------~ 73 (176)
T d1fzqa_ 11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITP-----TQGFNIKSVQS-QGFKLNVWDIGGQRK-----------I 73 (176)
T ss_dssp SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE-----ETTEEEEEEEE-TTEEEEEEECSSCGG-----------G
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCccee-----eeeeeEEEecc-CCeeEeEeecccccc-----------c
Confidence 455667899999999999999999998765311111 11122223333 577888999998543 1
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.......+...|++++++|+++..+..+. ..+..+..... ....|+++|.||+|+... .....+... +.
T Consensus 74 ~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~-~~~~pillv~nK~Dl~~~--~~~~~~~~~-----~~-- 143 (176)
T d1fzqa_ 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA--APASEIAEG-----LN-- 143 (176)
T ss_dssp HHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT--
T ss_pred hhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhc-cCCCeEEEEEEecccccc--ccHHHHHHH-----HH--
Confidence 12222334578999999998744433332 22222221111 112389999999999765 322222211 10
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
......+.+. ...+|+.++.++.+++++|.+
T Consensus 144 ~~~~~~~~~~---~~~~SA~tg~gv~e~~~~l~~ 174 (176)
T d1fzqa_ 144 LHTIRDRVWQ---IQSCSALTGEGVQDGMNWVCK 174 (176)
T ss_dssp GGGCCSSCEE---EEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHhcCCE---EEEEeCCCCCCHHHHHHHHHh
Confidence 0111122111 125688899999999997654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.62 E-value=1.5e-15 Score=117.15 Aligned_cols=159 Identities=14% Similarity=0.085 Sum_probs=91.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+++|+|+|..|+|||||++.|.+... .. ....|....+..+.. ++..+.++|++|... +.....
T Consensus 2 e~ki~i~G~~~~GKTsLl~~l~~~~~-~~---~~~~T~~~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~ 65 (164)
T d1zd9a1 2 EMELTLVGLQYSGKTTFVNVIASGQF-NE---DMIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMWE 65 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CC---SCCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCC-CC---cccccceeeeeeeee-eeEEEEEeecccccc-----------cccccc
Confidence 47999999999999999999986543 11 112233334444444 678899999999322 222222
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+..++++++|+|+++..+-.. ...+..+..... ....|+++|.||.|+... ....+.... +. ...+.
T Consensus 66 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~pi~lv~nK~Dl~~~--~~~~~i~~~-----~~--~~~~~ 135 (164)
T d1zd9a1 66 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPGA--LDEKELIEK-----MN--LSAIQ 135 (164)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGCC
T ss_pred ccccccchhhcccccccccccchhhhhhhhhhhhhc-ccCCcEEEEEeccccchh--hhHHHHHHH-----HH--HHHHH
Confidence 33457899999999874433222 122222222111 112389999999998654 222222222 10 01111
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.+... ...+|+.++.++.++++.|.+
T Consensus 136 ~~~~~---~~e~Sa~~g~gv~e~~~~l~~ 161 (164)
T d1zd9a1 136 DREIC---CYSISCKEKDNIDITLQWLIQ 161 (164)
T ss_dssp SSCEE---EEECCTTTCTTHHHHHHHHHH
T ss_pred hCCCE---EEEEeCcCCcCHHHHHHHHHH
Confidence 11111 125678889999998887654
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=2.2e-14 Score=113.07 Aligned_cols=174 Identities=13% Similarity=0.164 Sum_probs=96.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|.+|||||||+|+|+|...... .....++...........+......++++..................
T Consensus 14 ~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (188)
T d1puia_ 14 DTGIEVAFAGRSNAGKSSALNTLTNQKSLAR--TSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGE 91 (188)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC---------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCCceEe--ecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhh
Confidence 4458999999999999999999998764221 11112222222222222444444444444433322222222222222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
..........++++.+............+..+... . .++++++||+|.... ......+.. +.+.+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~v~~k~D~~~~--~~~~~~~~~-----~~~~l~~~ 159 (188)
T d1puia_ 92 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS-N----IAVLVLLTKADKLAS--GARKAQLNM-----VREAVLAF 159 (188)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGSCH--HHHHHHHHH-----HHHHHGGG
T ss_pred hhhhhhheeEEEEeecccccchhHHHHHHHHhhhc-c----ccccchhhhhhccCH--HHHHHHHHH-----HHHHHHhh
Confidence 22333455666676676656666666666555543 2 278889999999876 555555555 55555554
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....-+ ...|++++.++++|++.|..++
T Consensus 160 ~~~~~~----i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 160 NGDVQV----ETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp CSCEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCcE----EEEeCCCCCCHHHHHHHHHHHh
Confidence 433222 2568899999999999887764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.60 E-value=4.9e-15 Score=116.35 Aligned_cols=167 Identities=16% Similarity=0.099 Sum_probs=97.8
Q ss_pred CCCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
..+....+|+|+|..|||||||++.|.+.......++ .......... .+..+.++|++|.....
T Consensus 12 ~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t-----~~~~~~~~~~-~~~~~~i~D~~g~~~~~---------- 75 (182)
T d1moza_ 12 WGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPT-----IGFNVETLSY-KNLKLNVWDLGGQTSIR---------- 75 (182)
T ss_dssp TTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSS-----TTCCEEEEEE-TTEEEEEEEEC----CC----------
T ss_pred hCCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccc-----cceEEEEEee-CCEEEEEEecccccccc----------
Confidence 3456679999999999999999999986654222222 2222233333 67788999999965421
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
......+...+++++|+|.++..+..+. ..+..+..... ....|++||.||+|+... ...++.... +.
T Consensus 76 -~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~-~~~~piliv~NK~Dl~~~--~~~~~i~~~-----~~-- 144 (182)
T d1moza_ 76 -PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQPGA--LSASEVSKE-----LN-- 144 (182)
T ss_dssp -TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTSTTC--CCHHHHHHH-----TT--
T ss_pred -hhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhc-cCCcceEEEEEeeccccc--cCHHHHHHH-----HH--
Confidence 2233455688999999998855554432 22222211111 112389999999998654 222222221 00
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+.....+.+. ...+|+.++.++.++++.|.+.+.+
T Consensus 145 ~~~~~~~~~~---~~e~SA~~g~gv~e~~~~l~~~i~~ 179 (182)
T d1moza_ 145 LVELKDRSWS---IVASSAIKGEGITEGLDWLIDVIKE 179 (182)
T ss_dssp TTTCCSSCEE---EEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCE---EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 0111111111 1367899999999999988777654
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.60 E-value=1.5e-14 Score=115.51 Aligned_cols=167 Identities=16% Similarity=0.130 Sum_probs=98.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccc-cCCCCCceeeEeE--EEE-------------------------eeCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMK--TTV-------------------------LKDG 68 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~-~~~~~~t~~~~~~--~~~-------------------------~~~~ 68 (363)
.+..+|+|+|+.++|||||+++|+|....... ......+...... ... ....
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 44589999999999999999999874321100 0000000000000 000 0012
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCC-CHHHHHHHHHHHHHhccccccceEEEEeCC
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~ 147 (363)
+.++++||||.. .+.+.+..+...+|.+++|+++...+ ....+..+..+.. ++.. ++++++||+
T Consensus 86 r~~~iiD~PGH~-----------df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~-~~i~---~iIV~vNK~ 150 (205)
T d2qn6a3 86 RRISFIDAPGHE-----------VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGVK---NLIIVQNKV 150 (205)
T ss_dssp EEEEEEECSCHH-----------HHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCC---CEEEEEECG
T ss_pred EEEEEeccchHH-----------HHHhhhhcceeccccccccccccccccchhHHHHHHHHHH-cCCc---eeeeccccC
Confidence 368899999943 34444555566789999999998665 4444555554444 3432 788899999
Q ss_pred CCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 148 DDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 148 D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
|+... ......... +...+.......+ .....|+..+.++.+|++.|...+
T Consensus 151 Dl~~~--~~~~~~~~~-----~~~~l~~~~~~~~---p~ipiSA~~g~nI~~L~e~i~~~i 201 (205)
T d2qn6a3 151 DVVSK--EEALSQYRQ-----IKQFTKGTWAENV---PIIPVSALHKINIDSLIEGIEEYI 201 (205)
T ss_dssp GGSCH--HHHHHHHHH-----HHHHHTTSTTTTC---CEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CCccc--hHHHHHHHH-----HHHHhccccCCCC---eEEEEeCCCCCChHHHHHHHHhhC
Confidence 99866 433333332 3333333221111 123578899999999999887764
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=5.4e-15 Score=114.56 Aligned_cols=159 Identities=17% Similarity=0.123 Sum_probs=92.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|||..|+|||||++.|++... .. ......+.......+.... ...+.++||+|... +.....
T Consensus 6 ~Ki~vvG~~~vGKTsLi~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~-----------~~~~~~ 72 (169)
T d3raba_ 6 FKILIIGNSSVGKTSFLFRYADDSF-TP-AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER-----------YRTITT 72 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CS-SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCC-Cc-ccccccccceeeEEEEeecceEEEEEEECCCchh-----------hHHHHH
Confidence 5899999999999999999985532 21 1112222233333333311 24678999999543 222333
Q ss_pred ccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+..+|++++|+|.++.-+.... .++..+....... .+++++.||+|.........+ . ...+....+
T Consensus 73 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~v~~~-~--------~~~~~~~~~ 141 (169)
T d3raba_ 73 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDERVVSSE-R--------GRQLADHLG 141 (169)
T ss_dssp TTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSC--CEEEEEEECTTCGGGCCSCHH-H--------HHHHHHHHT
T ss_pred HHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCc--ceEEEEEeecccccccccchh-h--------hHHHHHHcC
Confidence 456788999999998732222221 2223333332222 378888999997643101111 1 222333334
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..++ .+|++++.++.++++.+-+.+
T Consensus 142 ~~~~------e~Sak~g~gv~e~f~~l~~~i 166 (169)
T d3raba_ 142 FEFF------EASAKDNINVKQTFERLVDVI 166 (169)
T ss_dssp CEEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred CEEE------EecCCCCcCHHHHHHHHHHHH
Confidence 4443 567888899999998877655
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=1.1e-14 Score=114.03 Aligned_cols=167 Identities=17% Similarity=0.210 Sum_probs=98.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
+.|+|+|.+|+|||||||+|+|..... .+....++...+......+...+.++|++|..... ..............
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 81 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE--KRAINRLMNKAASS 81 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEE--CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH--HHHHHHHHTCCTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcee--eccCCCceEEEEEeeeecCCceeEeecCCCceecc--hhhhhhhhhhcccc
Confidence 579999999999999999999987522 33344455555555544466777788999865411 11111111111222
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
....+++++++.+.. ............+.. ...+.++++|++|...... .+... ...+....+..
T Consensus 82 ~~~~~~~~l~~~d~~-~~~~~~~~~~~~l~~-----~~~~~i~v~~k~d~~~~~~-~~~~~--------~~~~~~~~~~~ 146 (179)
T d1egaa1 82 SIGDVELVIFVVEGT-RWTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQEKA-DLLPH--------LQFLASQMNFL 146 (179)
T ss_dssp CCCCEEEEEEEEETT-CCCHHHHHHHHHHHS-----SSSCEEEEEESTTTCCCHH-HHHHH--------HHHHHTTSCCS
T ss_pred chhhcceeEEEEecC-ccchhHHHHHHHhhh-----ccCceeeeeeeeeccchhh-hhhhH--------hhhhhhhcCCC
Confidence 334667888888876 444443333333322 1227889999999876521 12211 22233333322
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+ ...|++++.++++|++.|.+.+++
T Consensus 147 ~~-----~~vSA~~g~gi~~L~~~i~~~lpe 172 (179)
T d1egaa1 147 DI-----VPISAETGLNVDTIAAIVRKHLPE 172 (179)
T ss_dssp EE-----EECCTTTTTTHHHHHHHHHTTCCB
T ss_pred CE-----EEEeCcCCCCHHHHHHHHHHhCCC
Confidence 22 246888999999999988776544
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.7e-14 Score=111.53 Aligned_cols=157 Identities=22% Similarity=0.145 Sum_probs=85.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+.+... .. ..+.........+.. ++ ..+.++||+|.... ....
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~-~~---~~~~~~~~~~~~i~~-~~~~~~l~i~D~~g~e~~-----------~~~~ 65 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVED-GP---EAEAAGHTYDRSIVV-DGEEASLMVYDIWEQDGG-----------RWLP 65 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC-------------CEEEEEEEEE-TTEEEEEEEEECC------------------CH
T ss_pred eEEEEECCCCcCHHHHHHHHhCCcc-CC---cCCeeeeeecceeec-cccccceeeeeccccccc-----------ceec
Confidence 3799999999999999999987653 11 111111111222333 33 46778999995432 1112
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++|+|++++-+-... .++..+....+ ....|+++|.||+|+......... . ...+....
T Consensus 66 ~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~v~~~-~--------~~~~~~~~ 135 (168)
T d2gjsa1 66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVD-E--------GRACAVVF 135 (168)
T ss_dssp HHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGGGCCSCHH-H--------HHHHHHHH
T ss_pred ccchhhhhhhceeccccccccccccccccchhhcccc-cccceEEEeecccchhhhcchhHH-H--------HHHHHHhc
Confidence 2234578999999998833332222 23333333322 122388999999998643101111 1 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ .+|++++.++.+++..+-+.+
T Consensus 136 ~~~~~------e~Sak~~~~v~~~f~~l~~~i 161 (168)
T d2gjsa1 136 DCKFI------ETSAALHHNVQALFEGVVRQI 161 (168)
T ss_dssp TSEEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEE------EEeCCCCcCHHHHHHHHHHHH
Confidence 44443 468888999999888765543
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.57 E-value=5.5e-15 Score=115.02 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=94.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|..|||||||++.|++...... ..|.......... ....+.++|++|... ....
T Consensus 10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~D~~g~~~-----------~~~~ 72 (173)
T d1e0sa_ 10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-----IPTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPL 72 (173)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-----EEETTEEEEEEEE-TTEEEEEEEESCCGG-----------GHHH
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-----cceeeeeEEEeec-cceeeEEecCCCcch-----------hhhH
Confidence 4568999999999999999999986543111 1122222333333 677888999999654 2233
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+..++++++|+|.+..-+.... ...+...... ....+++++.||.|+... ....+.... +. +.
T Consensus 73 ~~~~~~~~~~ii~v~D~s~~~~~~~~--~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~--~~~~~i~~~-----~~--~~ 141 (173)
T d1e0sa_ 73 WRHYYTGTQGLIFVVDCADRDRIDEA--RQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEK-----LG--LT 141 (173)
T ss_dssp HGGGTTTCCEEEEEEETTCGGGHHHH--HHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred HHhhhcccceEEEEEecccchhHHHH--HHHHHHHhhhcccccceeeeeeeccccccc--ccHHHHHHH-----HH--HH
Confidence 44566789999999998733222221 1222222111 122389999999998654 222222111 00 11
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.+..+.+. ...+|+.++.++.++++.|..-
T Consensus 142 ~~~~~~~~---~~e~SA~tg~gv~e~~~~l~~~ 171 (173)
T d1e0sa_ 142 RIRDRNWY---VQPSCATSGDGLYEGLTWLTSN 171 (173)
T ss_dssp GCCSSCEE---EEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHhCCCE---EEEeeCCCCcCHHHHHHHHHHh
Confidence 11111111 1267899999999999987653
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=2.4e-14 Score=125.62 Aligned_cols=118 Identities=18% Similarity=0.132 Sum_probs=76.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCC--CCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS--GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|.+|+|||||+|+|+|......+.... ..|+... ..+...++..++++||||++.......... ..
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~-~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~----~~ 130 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER-HPYKHPNIPNVVFWDLPGIGSTNFPPDTYL----EK 130 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC-EEEECSSCTTEEEEECCCGGGSSCCHHHHH----HH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceee-eeeeccCCCeEEEEeCCCcccccccHHHHH----HH
Confidence 4799999999999999999999965432222211 1122222 222233566788999999987554433322 21
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
. .....|.++++.+ .+++..+...++.+... +. ++++|+||+|..
T Consensus 131 ~--~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~-~k----~~~~V~nK~D~~ 175 (400)
T d1tq4a_ 131 M--KFYEYDFFIIISA--TRFKKNDIDIAKAISMM-KK----EFYFVRTKVDSD 175 (400)
T ss_dssp T--TGGGCSEEEEEES--SCCCHHHHHHHHHHHHT-TC----EEEEEECCHHHH
T ss_pred h--hhhcceEEEEecC--CCCCHHHHHHHHHHHHc-CC----CEEEEEeCcccc
Confidence 1 2234577777665 37888888888877663 33 899999999964
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.55 E-value=3.8e-14 Score=110.42 Aligned_cols=162 Identities=17% Similarity=0.114 Sum_probs=87.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|||..|+|||||++.+++... ....... .............+ ...+.++||+|... .....
T Consensus 3 ~Ki~~vG~~~vGKSsLi~~~~~~~~-~~~~~~t-~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-----------~~~~~ 69 (175)
T d1ky3a_ 3 LKVIILGDSGVGKTSLMHRYVNDKY-SQQYKAT-IGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQSLG 69 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC-CTTC----CCCSCEEEEECCSSSCCEEEEEECCC--------------------
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCC-CCccCcc-cccceeeeeeeecCcccccceeeccCCchh-----------hhhHH
Confidence 5899999999999999999986542 1111111 11111111111112 24567899999543 22223
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccc--cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
......++++++++|.++..+-.. ..++..+....... ...|+++|.||+|+....+..-.+. ..++..
T Consensus 70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~--------~~~~~~ 141 (175)
T d1ky3a_ 70 VAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS--------AQELAK 141 (175)
T ss_dssp -CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHH--------HHHHHH
T ss_pred HHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHH--------HHHHHH
Confidence 345568899999999873333222 23444444443321 1238999999999864311111111 223334
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
..+...++ .+|++.+.+++++++.+-+.
T Consensus 142 ~~~~~~~~-----e~SA~~g~gv~e~f~~l~~~ 169 (175)
T d1ky3a_ 142 SLGDIPLF-----LTSAKNAINVDTAFEEIARS 169 (175)
T ss_dssp HTTSCCEE-----EEBTTTTBSHHHHHHHHHHH
T ss_pred HcCCCeEE-----EEeCCCCcCHHHHHHHHHHH
Confidence 44332222 56888899999998876553
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=6.7e-14 Score=109.16 Aligned_cols=163 Identities=19% Similarity=0.182 Sum_probs=95.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.+++... .. ....|.... ...... ++ ..+.++|++|.... ...
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~-----------~~~ 66 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQF-PE---VYVPTVFENYVADIEV-DGKQVELALWDTAGLEDY-----------DRL 66 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CS---SCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------TTT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-CC---CcCCceeeeccccccc-cccceeeeccccCccchh-----------ccc
Confidence 6899999999999999999986542 21 111222222 122222 33 36789999996432 223
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc----cCC-CchH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG----HEC-PKPL 169 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~----~~~-~~~~ 169 (363)
....+...|++++|+|++++-+-.. ..++..+.. ...++ |++||.||+|+... ........ ... .+..
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~~--piilvgnK~Dl~~~--~~~~~~~~~~~~~~v~~~e~ 141 (177)
T d1kmqa_ 67 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNV--PIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEG 141 (177)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HSTTS--CEEEEEECGGGTTC--HHHHHHHHHTTCCCCCHHHH
T ss_pred chhhcccchhhhhhcccchhHHHHHHHHHHHHHHHH-hCCCC--ceEEeeecccccch--hhHHHHHHHhhcccccHHHH
Confidence 3445678899999999983322222 122333333 33333 89999999998765 22221111 000 1112
Q ss_pred HHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+....+...++ .+|++++.+++++++.+.+.+
T Consensus 142 ~~~a~~~~~~~~~-----E~SAkt~~gi~e~F~~i~~~~ 175 (177)
T d1kmqa_ 142 RDMANRIGAFGYM-----ECSAKTKDGVREVFEMATRAA 175 (177)
T ss_dssp HHHHHHTTCSEEE-----ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEE-----EecCCCCcCHHHHHHHHHHHH
Confidence 3344444433333 678889999999988776543
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2e-14 Score=111.54 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=91.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... .... ..+.+.......+.. ++ ..+.++||+|... +....
T Consensus 6 ~Ki~lvG~~~vGKTsLi~~l~~~~f-~~~~-~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~~~ 71 (171)
T d2ew1a1 6 FKIVLIGNAGVGKTCLVRRFTQGLF-PPGQ-GATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRSIT 71 (171)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-CTTC-CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-CCcc-cccccceEEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHH
Confidence 5899999999999999999985442 2211 122233333333333 33 3567899999432 33334
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+.+++++++|++.++.-+-.. ...+..+....... .++++|.||+|.........+ . ...+....
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~~ilvgnK~D~~~~~~v~~~-~--------~~~~~~~~ 140 (171)
T d2ew1a1 72 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAERREVSQQ-R--------AEEFSEAQ 140 (171)
T ss_dssp GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCSSCHH-H--------HHHHHHHH
T ss_pred HHHHhccceEEEeeecccchhhhhhhhhhhhhccccccc--ccEEEEEeecccccccchhhh-H--------HHHHHHhC
Confidence 456678999999999873322221 22333333332222 378889999997643111111 1 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHH-HHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN-SVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~ 208 (363)
+..++ .+|++++.++++++..+- .++
T Consensus 141 ~~~~~------~~SAktg~gV~e~f~~l~~~l~ 167 (171)
T d2ew1a1 141 DMYYL------ETSAKESDNVEKLFLDLACRLI 167 (171)
T ss_dssp TCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEE------EEccCCCCCHHHHHHHHHHHHH
Confidence 33333 568889999999876543 444
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=4.7e-14 Score=108.81 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=92.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
+.+|+|||..|||||||++.|++... .. ....+....+.......+ ..+.++|++|.... .....
T Consensus 3 e~Ki~viG~~~vGKTsli~~l~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--------~~~~~- 69 (166)
T d1ctqa_ 3 EYKLVVVGAGGVGKSALTIQLIQNHF-VD---EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY--------SAMRD- 69 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC-CC---SCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG--------HHHHH-
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCC-CC---ccCCccceeeccceeeeceeeeeeeeeccCcccc--------ccchh-
Confidence 36899999999999999999986542 21 111222222222222133 45678899986542 11111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
..+..++++++|+|.+++-+-+. ..++..+....+.. ..|+++|.||+|+... ....+. ...+...
T Consensus 70 --~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~--~~~~~~--------~~~~~~~ 136 (166)
T d1ctqa_ 70 --QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD-DVPMVLVGNKCDLAAR--TVESRQ--------AQDLARS 136 (166)
T ss_dssp --HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCS-SCCEEEEEECTTCSCC--CSCHHH--------HHHHHHH
T ss_pred --hhhhcccccceeecccccccHHHHHHHHHHHHHhcCCC-CCeEEEEecccccccc--cccHHH--------HHHHHHH
Confidence 12235689999999873333222 23444444443321 2389999999998654 111111 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.+..++ .+|++++.++.+++..+-+.+.
T Consensus 137 ~~~~~~------e~Sak~g~gi~e~f~~i~~~i~ 164 (166)
T d1ctqa_ 137 YGIPYI------ETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HTCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred hCCeEE------EEcCCCCcCHHHHHHHHHHHHH
Confidence 333333 5688899999999988766554
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.9e-14 Score=109.69 Aligned_cols=154 Identities=16% Similarity=0.084 Sum_probs=90.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe-eC--CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.+++... .. ....|+...+..... .+ ...+.++||+|.. .....
T Consensus 4 ~Ki~vvG~~~vGKTsli~~~~~~~f-~~---~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~-----------~~~~~ 68 (170)
T d1i2ma_ 4 FKLVLVGDGGTGKTTFVKRHLTGEF-EK---KYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE-----------KFGGL 68 (170)
T ss_dssp EEEEEEECTTSSHHHHHHTTC------C---CEEEETTEEEEEEEECBTTCCEEEEEEECTTHH-----------HHSSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-Cc---ccccceecccccccccccccccccccccccccc-----------cccee
Confidence 5899999999999999999986542 21 111222222222211 12 3467899999832 23333
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..++++++|+|++++-+-.. ..++..+..... + .|+++|.||+|+... ...+ . .......
T Consensus 69 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~--~piilvgnK~Dl~~~--~~~~----~-----~~~~~~~ 134 (170)
T d1i2ma_ 69 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDIKDR--KVKA----K-----SIVFHRK 134 (170)
T ss_dssp GGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHC-S--CCEEEEEECCCCSCS--CCTT----T-----SHHHHSS
T ss_pred cchhcccccchhhccccccccccchhHHHHHHHhhccC-C--Cceeeecchhhhhhh--hhhh----H-----HHHHHHH
Confidence 3445678899999999984433222 334444444432 2 389999999998654 1111 1 1122333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+-.|+ .+|++.+.++.++++.|.+.+
T Consensus 135 ~~~~~~------e~Sak~~~~v~e~f~~l~~~l 161 (170)
T d1i2ma_ 135 KNLQYY------DISAKSNYNFEKPFLWLARKL 161 (170)
T ss_dssp CSSEEE------EEBTTTTBTTTHHHHHHHHHH
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 333333 578888999999998777654
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.6e-14 Score=110.11 Aligned_cols=160 Identities=19% Similarity=0.230 Sum_probs=90.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
+.+|+|+|..|+|||||++.+++.. |.. ....|...........++. .+.++|++|..... .+..
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~-f~~---~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--------~~~~- 68 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGT-FRE---SYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP--------AMQR- 68 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCC-CCS---SCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH--------HHHH-
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCC-CCC---ccCcceeeccccceeeccccceecccccccccccc--------cccc-
Confidence 4689999999999999999998654 221 1112332222222222443 55679999976521 1111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
..+..++++++|+|++++-+-.. ..++..+....+.....|+++|.||+|+........+ . ...+...
T Consensus 69 --~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~-e--------~~~~~~~ 137 (171)
T d2erxa1 69 --LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSS-E--------AEALART 137 (171)
T ss_dssp --HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHH-H--------HHHHHHH
T ss_pred --ccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHH-H--------HHHHHHH
Confidence 12235699999999873322222 2333444444332223489999999997543101111 1 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ .+|++++.+++++++.|-.++
T Consensus 138 ~~~~~~------e~Sak~~~~v~e~f~~l~~~~ 164 (171)
T d2erxa1 138 WKCAFM------ETSAKLNHNVKELFQELLNLE 164 (171)
T ss_dssp HTCEEE------ECBTTTTBSHHHHHHHHHHTC
T ss_pred cCCeEE------EEcCCCCcCHHHHHHHHHHHH
Confidence 343333 568889999999988766543
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.9e-14 Score=110.04 Aligned_cols=163 Identities=17% Similarity=0.174 Sum_probs=94.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|||..|+|||||++.+++.. |...... .........+.. ++ ..+.++|++|........ ..
T Consensus 4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~-f~~~~~~--t~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~----~~-- 73 (173)
T d2fn4a1 4 SETHKLVVVGGGGVGKSALTIQFIQSY-FVSDYDP--TIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMR----EQ-- 73 (173)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSS-CCSSCCT--TCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCH----HH--
T ss_pred CCeEEEEEECCCCcCHHHHHHHHHhCC-CCccccc--ccccceeeEecc-CCeeeeeecccccccccccccc----ch--
Confidence 345799999999999999999988543 2222211 112222233333 44 356789999977643211 11
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
.+...+++++|+|.++.-+-... .++..+....+. ...|++||.||+|+.... ....+. ...+.
T Consensus 74 -----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~~-~~~~~~--------~~~~~ 138 (173)
T d2fn4a1 74 -----YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQR-QVPRSE--------ASAFG 138 (173)
T ss_dssp -----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGGC-CSCHHH--------HHHHH
T ss_pred -----hhccceeeeeecccccccccchhhhhhHHHHHHhcc-CCCceEEEEEeechhhcc-ccchhh--------hhHHH
Confidence 12246999999998733332222 233334333321 123889999999975430 111111 22333
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
...+..++ .+|++++.++.++++.+-+.+..
T Consensus 139 ~~~~~~~~------e~Sak~g~gv~e~f~~l~~~i~k 169 (173)
T d2fn4a1 139 ASHHVAYF------EASAKLRLNVDEAFEQLVRAVRK 169 (173)
T ss_dssp HHTTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HhcCCEEE------EEeCCCCcCHHHHHHHHHHHHHH
Confidence 33343333 56888999999999987776643
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=5.5e-14 Score=108.44 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=90.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... .... ....+.......... ++ ..+.++||+|..... .+...
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~--------~~~~~- 72 (166)
T d1z0fa1 5 FKYIIIGDMGVGKSCLLHQFTEKKF-MADC-PHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFR--------AVTRS- 72 (166)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSSC-TTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTC--------HHHHH-
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-CCcc-cccccccceeEEEEE-CCEEEEEEEeccCCchhHH--------HHHHH-
Confidence 5899999999999999999986542 2211 112222222233333 43 367789999955421 12211
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
....+|++++|+++++.-+-.. ..++..+....... .+++++.||+|+........++ ...+....
T Consensus 73 --~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~~~~~~---------~~~~~~~~ 139 (166)
T d1z0fa1 73 --YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRDVTYEE---------AKQFAEEN 139 (166)
T ss_dssp --HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHHHHT
T ss_pred --HhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhcccc--ceEEEEcccccchhhcccHHHH---------HHHHHHHc
Confidence 2336799999999873322211 23344444433322 3788889999975431111111 22334443
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
+..++ .+|++++.+++++++.+-+.
T Consensus 140 ~~~~~------e~Saktg~~v~e~f~~i~~~ 164 (166)
T d1z0fa1 140 GLLFL------EASAKTGENVEDAFLEAAKK 164 (166)
T ss_dssp TCEEE------ECCTTTCTTHHHHHHHHHHH
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHH
Confidence 44433 57888999999998876543
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.8e-14 Score=109.93 Aligned_cols=158 Identities=18% Similarity=0.173 Sum_probs=93.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
+|+|+|..|+|||||++.+++... ..... .+............. ....+.++|++|.... ......
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----------~~~~~~ 68 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDSF-DNTYQ-ATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF-----------RSLIPS 68 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC-CSSCC-CCCSEEEEEEEEECSSCEEEEEEEEECCSGGG-----------GGGHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhCCC-CCccc-cceeeeccceeeccCCCceeeeecccCCcchh-----------ccchHH
Confidence 799999999999999999986542 22111 222222222222221 1246789999996542 111222
Q ss_pred cCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.+..++++++|+|.++..+-.. ..++..+........ ++++|.||+|+........++ ...+....+.
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~--~iilvgnK~Dl~~~~~~~~~~---------~~~~~~~~~~ 137 (164)
T d1yzqa1 69 YIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADKRQVSIEE---------GERKAKELNV 137 (164)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGGCCSCHHH---------HHHHHHHTTC
T ss_pred HhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCc--eEEEEecccchhhhhhhhHHH---------HHHHHHHcCC
Confidence 3457899999999873333222 334444444444433 888999999986431112111 2233444444
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.++ .+|++.+.++.++++.|.+.+
T Consensus 138 ~~~------e~SAk~g~~v~e~f~~i~~~l 161 (164)
T d1yzqa1 138 MFI------ETSAKAGYNVKQLFRRVAAAL 161 (164)
T ss_dssp EEE------ECCTTTCTTHHHHHHHHHHHS
T ss_pred EEE------EecCCCCcCHHHHHHHHHHhh
Confidence 433 578889999999998876643
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.51 E-value=1.7e-13 Score=106.78 Aligned_cols=163 Identities=15% Similarity=0.084 Sum_probs=90.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+.+|+|+|.+|||||||++.|.+..........+ . ....... .+..+.++|+++...... .
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~--~---~~~~~~~-~~~~~~~~d~~~~~~~~~-----------~ 75 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG--S---NVEEIVI-NNTRFLMWDIGGQESLRS-----------S 75 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC--S---SCEEEEE-TTEEEEEEECCC----CG-----------G
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccc--e---eEEEEee-cceEEEEecccccccccc-----------c
Confidence 345899999999999999999999875421111111 1 1112222 567788999988544221 1
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
........++++++++.++..+....................++++|.||.|+... ....+.... +. .....
T Consensus 76 ~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~i~~~-----~~-~~~~~ 147 (177)
T d1zj6a1 76 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQF-----LK-LTSIK 147 (177)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----HT-GGGCC
T ss_pred hhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEccccccc--CcHHHHHHH-----HH-HHhhH
Confidence 11223467899999998744443332221121111111223489999999998655 332222221 10 00001
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.....+ ...|++++.++.++++.|...+
T Consensus 148 ~~~~~~----~~~Sa~tg~Gi~e~~~~L~~~l 175 (177)
T d1zj6a1 148 DHQWHI----QACCALTGEGLCQGLEWMMSRL 175 (177)
T ss_dssp SSCEEE----EECBTTTTBTHHHHHHHHHHHH
T ss_pred hcCCEE----EEEeCCCCCCHHHHHHHHHHHh
Confidence 111111 2568899999999999887654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.51 E-value=1e-13 Score=113.83 Aligned_cols=116 Identities=23% Similarity=0.348 Sum_probs=84.0
Q ss_pred cEEEEEcCCCCchHHHHHHhh---cccc-------------cccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSIL---GRKA-------------FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~---g~~~-------------~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (363)
++|+|+|+.|+|||||+.+|+ |... +.........|+......+.| ++..++|+||||..+..
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~-~~~~~n~iDtPG~~dF~ 85 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDAPGHVDFT 85 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE-TTEEEEEECCCSSSSCS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc-CCeEEEEecCCchhhhH
Confidence 479999999999999999985 2211 011112234556666677788 89999999999998864
Q ss_pred CChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
. +....+. .+|+.++|+++...........++..... + .|.++++||+|....
T Consensus 86 ~-------e~~~~l~----~~D~avlVvda~~Gv~~~T~~~w~~a~~~-~----lP~i~fINKmDr~~a 138 (276)
T d2bv3a2 86 I-------EVERSMR----VLDGAIVVFDSSQGVEPQSETVWRQAEKY-K----VPRIAFANKMDKTGA 138 (276)
T ss_dssp T-------THHHHHH----HCCEEEEEEETTTSSCHHHHHHHHHHHTT-T----CCEEEEEECTTSTTC
T ss_pred H-------HHHHHHH----hhhheEEeccccCCcchhHHHHHHHHHHc-C----CCEEEEEeccccccc
Confidence 2 2333332 35899999999878888888888877754 2 289999999998765
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.51 E-value=1.8e-13 Score=109.59 Aligned_cols=138 Identities=12% Similarity=0.110 Sum_probs=87.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccccccc-------------------------------ccCCCCCceeeEeEEEEee
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-------------------------------SAGSSGVTKTCEMKTTVLK 66 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~ 66 (363)
+-++|+++|+.++|||||++.|+....... .......+.......+.+
T Consensus 8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~- 86 (222)
T d1zunb3 8 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST- 86 (222)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec-
Confidence 447999999999999999999963211000 000112233333334444
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeC
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~ 146 (363)
.++.++++||||..+. ...+.+ +...+|++++|+++...+....+..+..+..+ |-. ++++++||
T Consensus 87 ~~~~~~iiD~PGH~df-------v~~~~~----g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~-gv~---~iiv~vNK 151 (222)
T d1zunb3 87 AKRKFIIADTPGHEQY-------TRNMAT----GASTCDLAIILVDARYGVQTQTRRHSYIASLL-GIK---HIVVAINK 151 (222)
T ss_dssp SSEEEEEEECCCSGGG-------HHHHHH----HHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCC---EEEEEEEC
T ss_pred cceEEEEEeccchhhh-------hhhhcc----ccccCceEEEEeccccCcccchHHHHHHHHHc-CCC---EEEEEEEc
Confidence 6788999999997663 223332 33467999999999878888877776655553 422 68999999
Q ss_pred CCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 147 ~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
+|....+....+..... +..++...
T Consensus 152 ~D~~~~~~~~~~~~~~~-----l~~~~~~~ 176 (222)
T d1zunb3 152 MDLNGFDERVFESIKAD-----YLKFAEGI 176 (222)
T ss_dssp TTTTTSCHHHHHHHHHH-----HHHHHHTT
T ss_pred cccccccceehhhhHHH-----HhhhhHhh
Confidence 99986543444444444 55555544
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.51 E-value=1.8e-14 Score=110.94 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=91.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
++|+|+|..|+|||||++.+++.. |..... .+............ ++ ..+.++||+|........
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~-~~~~~~-~ti~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~----------- 68 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGI-FTKDYK-KTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAIT----------- 68 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC-CCCCSS-CCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCC-----------
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC-CCcccc-cccccccceeeeee-cCceeeeeeeccCCccchhhhh-----------
Confidence 699999999999999999988543 222111 11111222222222 33 466799999966532211
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhH-HHHhccCCCchHHHHHHh
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQL 175 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l-~~~~~~~~~~~~~~~~~~ 175 (363)
...+..++++++|+|+++.-+-.. ..++..+....+. .++++|.||+|+... ..+ .+. ...+...
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~iilVgnK~Dl~~~--~~v~~~~--------~~~~~~~ 135 (164)
T d1z2aa1 69 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD---IPTALVQNKIDLLDD--SCIKNEE--------AEGLAKR 135 (164)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCS---CCEEEEEECGGGGGG--CSSCHHH--------HHHHHHH
T ss_pred hhhhccCceEEEEEeccchhhhhhcccccccccccCCC---ceEEEeeccCCcccc--eeeeehh--------hHHHHHH
Confidence 112357899999999873333222 2344455544443 289999999998644 111 111 2233444
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.+..++ .+|++.+.+++++++.|-+.
T Consensus 136 ~~~~~~------e~Sak~g~~v~e~f~~l~~~ 161 (164)
T d1z2aa1 136 LKLRFY------RTSVKEDLNVSEVFKYLAEK 161 (164)
T ss_dssp HTCEEE------ECBTTTTBSSHHHHHHHHHH
T ss_pred cCCEEE------EeccCCCcCHHHHHHHHHHH
Confidence 444433 56888899999998876543
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.2e-14 Score=111.99 Aligned_cols=160 Identities=15% Similarity=0.109 Sum_probs=91.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|+|||||++.|++... ..... ...+.......+... ....+.++||+|...... +. .
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~---~ 74 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDDTF-DPELA-ATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT--------LT---P 74 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CTTCC-CCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC--------SH---H
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCC-CCccc-cceeecceeEEEEEeccccEEEEEECCCchhhHH--------HH---H
Confidence 7999999999999999999986542 22121 222222333333331 134678999999654321 11 1
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHh--ccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF--GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
......+++++|+++++.-+.. ....++..+. ......+++++.||.|.... ...... ..++....
T Consensus 75 ~~~~~~~~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~--~v~~~~--------~~~~~~~~ 142 (177)
T d1x3sa1 75 SYYRGAQGVILVYDVTRRDTFV--KLDNWLNELETYCTRNDIVNMLVGNKIDKENR--EVDRNE--------GLKFARKH 142 (177)
T ss_dssp HHHTTCCEEEEEEETTCHHHHH--THHHHHHHHTTCCSCSCCEEEEEEECTTSSSC--CSCHHH--------HHHHHHHT
T ss_pred HHHhcCCEEEEEEECCCccccc--cchhhhhhhcccccccceeeEEEeeccccccc--cccHHH--------HHHHHHHC
Confidence 1234779999999987222211 1222222221 12223477888999997654 211111 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+..++ ..|+..+.++.++++.+-+.+-.
T Consensus 143 ~~~~~------e~Sa~tg~gv~e~f~~l~~~l~~ 170 (177)
T d1x3sa1 143 SMLFI------EASAKTCDGVQCAFEELVEKIIQ 170 (177)
T ss_dssp TCEEE------ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHHHcc
Confidence 43333 46888899999999877665543
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.6e-13 Score=105.95 Aligned_cols=158 Identities=19% Similarity=0.149 Sum_probs=89.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
+.+|+|||..|+|||||++.+++... .... ..++... ...... ++ ..+.++|++|.... .....
T Consensus 3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f-~~~~---~~t~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~--------~~~~~ 69 (167)
T d1kaoa_ 3 EYKVVVLGSGGVGKSALTVQFVTGTF-IEKY---DPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQF--------ASMRD 69 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC-CSCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC--------HHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCC-CCcc---CCceeeeeeeeeec-CcceEeeccccCCCcccc--------ccchH
Confidence 47999999999999999999986542 2211 1122222 222222 33 35678999996552 11111
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
. .+..++++++++|++++-+-... .++..+..... ....|++||.||+|+........+ . ...+..
T Consensus 70 ~---~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~-~--------~~~~~~ 136 (167)
T d1kaoa_ 70 L---YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSS-E--------GRALAE 136 (167)
T ss_dssp H---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHH-H--------HHHHHH
T ss_pred H---Hhhcccceeeeeeecchhhhhhhhchhhhhhhhcc-CCCCCEEEEEEccchhhcccchHH-H--------HHHHHH
Confidence 1 22356999999998733332222 22222332222 122389999999997643111111 1 122233
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+..++ .+|++++.++.++++.+-+.+
T Consensus 137 ~~~~~~~------e~Sak~g~~i~e~f~~i~~~i 164 (167)
T d1kaoa_ 137 EWGCPFM------ETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp HHTSCEE------EECTTCHHHHHHHHHHHHHHH
T ss_pred HcCCeEE------EECCCCCcCHHHHHHHHHHHH
Confidence 3333443 568889999999988765543
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=8.2e-14 Score=110.29 Aligned_cols=160 Identities=16% Similarity=0.134 Sum_probs=92.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|+|||||++.|++... ...... +.........+... ....+.++||+|...... ...
T Consensus 7 ~KivvvG~~~vGKTsli~~l~~~~~-~~~~~~-t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~-----------~~~ 73 (194)
T d2bcgy1 7 FKLLLIGNSGVGKSCLLLRFSDDTY-TNDYIS-TIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT-----------ITS 73 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCC-CTTCCC-SSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC-----------CCG
T ss_pred EEEEEECCCCcCHHHHHHHHhhCCC-CCCcCC-ccceeEEEEEEEEeeEEEEEEEEECCCchhhHH-----------HHH
Confidence 5899999999999999999885542 221111 11122222223231 234678899999655321 122
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHH-HHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+..+|++++|+|.++..+..... .+..+....... .++++|.||.|.........++ ........+
T Consensus 74 ~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 142 (194)
T d2bcgy1 74 SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDKRVVEYDV---------AKEFADANK 142 (194)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHH---------HHHHHHHTT
T ss_pred HHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCC--ceEEEEEeccccccccchhHHH---------HhhhhhccC
Confidence 3456889999999987333322222 233333333323 3889999999987541111111 122223333
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..++ ..|+..+.++.++++.+.+.+.
T Consensus 143 ~~~~------e~SAk~g~gi~e~f~~l~~~i~ 168 (194)
T d2bcgy1 143 MPFL------ETSALDSTNVEDAFLTMARQIK 168 (194)
T ss_dssp CCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred cceE------EEecCcCccHHHHHHHHHHHHH
Confidence 3333 4688889999999887765543
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.9e-13 Score=106.23 Aligned_cols=162 Identities=19% Similarity=0.158 Sum_probs=92.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee-EeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.++... |..... .|+.. ....... .+ ..+.++||+|..... ..
T Consensus 10 ~Ki~lvG~~~vGKTsLi~r~~~~~-f~~~~~---~Ti~~~~~~~~~~-~~~~~~l~i~D~~g~e~~~-----------~~ 73 (185)
T d2atxa1 10 LKCVVVGDGAVGKTCLLMSYANDA-FPEEYV---PTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYD-----------RL 73 (185)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS-CCCSCC---CSSCCCEEEEEES-SSCEEEEEEECCCCSSSST-----------TT
T ss_pred EEEEEECCCCCCHHHHHHHHhhCC-CCCcCC---CceeeeeeEEEee-CCceEEeecccccccchhh-----------hh
Confidence 589999999999999999988543 322211 12211 1122222 33 456799999965422 12
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccC----C-CchH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----C-PKPL 169 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~----~-~~~~ 169 (363)
....+...|++++|+|++++-+-.. ..++..+.. ...+. ++++|.||+|+... .......... . .+..
T Consensus 74 ~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~-~~~~~--~~ilvgnK~Dl~~~--~~~~~~~~~~~~r~v~~~~~ 148 (185)
T d2atxa1 74 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE-YAPNV--PFLLIGTQIDLRDD--PKTLARLNDMKEKPICVEQG 148 (185)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HSTTC--CEEEEEECTTSTTC--HHHHHHHTTTTCCCCCHHHH
T ss_pred hhhcccccceeeeccccchHHHHHHHHHHHHHHHHh-cCCCC--CeeEeeeccccccc--hhhhhhhhhcccccccHHHH
Confidence 2345668899999999984333222 122333333 23333 88999999998765 2222211110 0 0112
Q ss_pred HHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.++....+...++ ++|++++.+++++++.+-+.
T Consensus 149 ~~~a~~~~~~~~~-----E~SAk~~~gv~e~F~~li~~ 181 (185)
T d2atxa1 149 QKLAKEIGACCYV-----ECSALTQKGLKTVFDEAIIA 181 (185)
T ss_dssp HHHHHHHTCSCEE-----ECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEE-----EecCCCCcCHHHHHHHHHHH
Confidence 2333344432232 57888999999998866543
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.50 E-value=1.6e-13 Score=104.99 Aligned_cols=156 Identities=12% Similarity=0.062 Sum_probs=87.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
++|+|+|+.|||||||+|.|++... . .... +.......... ....+.++|++|.... ......
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~-~---~~~~-~~~~~~~~~~~-~~~~~~~~d~~g~~~~-----------~~~~~~ 63 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEI-V---TTIP-TIGFNVETVEY-KNISFTVWDVGGQDKI-----------RPLWRH 63 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCS-S---CCCC-CSSCCEEEEEC-SSCEEEEEECCCCGGG-----------HHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-C---cccc-ceeeEEEEEee-eeEEEEEecCCCcccc-----------hhhhhh
Confidence 4899999999999999999987653 1 1111 11111222222 5678889999996541 111222
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhc--cccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
.....++++++++..+..+..... .++..... .....+++++.||.|.... ....+..... ....... .
T Consensus 64 ~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~v~~k~d~~~~--~~~~~i~~~~----~~~~~~~-~ 134 (160)
T d1r8sa_ 64 YFQNTQGLIFVVDSNDRERVNEAR--EELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKL----GLHSLRH-R 134 (160)
T ss_dssp HTTTCSEEEEEEETTCGGGHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHT----TGGGCSS-C
T ss_pred hhccceeEEEEEEecChHHHHHHH--HHHHHHHHhhcccCceEEEEeeccccccc--ccHHHHHHHH----HHHHHhh-C
Confidence 345679999999987443332221 12222211 1122378889999988754 2222221110 0001111 1
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
+ ..+ ...|++++.++.++++.|..
T Consensus 135 ~-~~~----~~~SAktg~gi~e~~~~l~~ 158 (160)
T d1r8sa_ 135 N-WYI----QATCATSGDGLYEGLDWLSN 158 (160)
T ss_dssp C-EEE----EECBTTTTBTHHHHHHHHHH
T ss_pred C-CEE----EEeECCCCCCHHHHHHHHHh
Confidence 1 111 26789999999999998754
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.2e-13 Score=108.35 Aligned_cols=166 Identities=17% Similarity=0.095 Sum_probs=93.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
..++|+|||..|+|||||++.+++.. |..... .|+... ...+.. ++ ..+.++|+.|... +.
T Consensus 4 ~~iKivviG~~~vGKTsli~~~~~~~-f~~~~~---~ti~~~~~~~~~~-~~~~~~~~~~d~~g~~~-----------~~ 67 (183)
T d1mh1a_ 4 QAIKCVVVGDGAVGKTCLLISYTTNA-FPGEYI---PTVFDNYSANVMV-DGKPVNLGLWDTAGQED-----------YD 67 (183)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSS-CCSSCC---CCSCCEEEEEEEE-TTEEEEEEEECCCCSGG-----------GT
T ss_pred eeEEEEEECCCCCCHHHHHHHHHhCC-CCcccc---cceeeceeeeeec-cCcceEEEeeccccccc-----------ch
Confidence 34799999999999999999998654 222111 122222 122222 33 3567899988543 22
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHH-H-HHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccC---CC-ch
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-T-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE---CP-KP 168 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~-~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~---~~-~~ 168 (363)
......+...|++++|+|+++.-+-... . ++..+.. ...+. |++||.||+|+.... ...+...... .. ..
T Consensus 68 ~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~-~~~~~--piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 143 (183)
T d1mh1a_ 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-HCPNT--PIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQ 143 (183)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HSTTS--CEEEEEECHHHHTCH-HHHHHHHHTTCCCCCHHH
T ss_pred hhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHH-hCCCC--cEEEEeecccchhhh-hhhhhhhhccccchhhHH
Confidence 2233456788999999998833332222 1 2333333 23333 899999999976541 1112111110 00 01
Q ss_pred HHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+....+...++ ++|++++.++.++++.+-+.+
T Consensus 144 ~~~~a~~~~~~~~~-----E~SAk~~~~V~e~F~~l~~~i 178 (183)
T d1mh1a_ 144 GLAMAKEIGAVKYL-----ECSALTQRGLKTVFDEAIRAV 178 (183)
T ss_dssp HHHHHHHTTCSEEE-----ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCceEE-----EcCCCCCcCHHHHHHHHHHHH
Confidence 12233333433333 678889999999988766543
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.6e-13 Score=104.67 Aligned_cols=157 Identities=20% Similarity=0.198 Sum_probs=92.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
..+|+|+|..|+|||||++.+++.. |.. ....|....+ ..+.. ++ ..+.++||+|......
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~~~-f~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~d~~g~~~~~~----------- 67 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVEGQ-FVD---SYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSI----------- 67 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC-CCS---CCCSSCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCC-----------
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCC-CCc---ccCcceecccceEEec-CcEEEEeeeccccccccccc-----------
Confidence 4799999999999999999987543 222 1112222222 22233 44 3567899999765321
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.....+..+|++++|+|+++.-+-... .++..+...++.. ..|+++|.||+|+........++ ...+..
T Consensus 68 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilvgnK~Dl~~~r~v~~~~---------~~~~a~ 137 (167)
T d1xtqa1 68 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV-QIPIMLVGNKKDLHMERVISYEE---------GKALAE 137 (167)
T ss_dssp CCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSS-CCCEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred ccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhccccc-ccceeeeccccccccccchhHHH---------HHHHHH
Confidence 112345678999999998733332222 2334444444321 23899999999976431011111 222333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
..+..|+ .+|++++.++.+++..|-..
T Consensus 138 ~~~~~~~------e~Sak~~~~v~~~f~~li~~ 164 (167)
T d1xtqa1 138 SWNAAFL------ESSAKENQTAVDVFRRIILE 164 (167)
T ss_dssp HHTCEEE------ECCTTCHHHHHHHHHHHHHH
T ss_pred HcCCEEE------EEecCCCCCHHHHHHHHHHH
Confidence 3343443 46888999999998866443
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=5.5e-14 Score=108.43 Aligned_cols=159 Identities=15% Similarity=0.174 Sum_probs=90.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... .... ..+.+.......+.. ++ ..+.++||||...... ..
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~~-~~~~-~~t~~~~~~~~~i~~-~~~~~~~~i~Dt~G~~~~~~-----------~~ 68 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDKF-NPSF-ITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRT-----------IT 68 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCC-CC--------CCEEEEEEES-SSCEEEEEEECCTTGGGTSC-----------CC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-CCcc-CCccceeEEEEEEEE-CCEEEEEEEEECCCchhhHH-----------HH
Confidence 5899999999999999999986542 2111 112222233333333 33 3567899999643221 11
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHH-HHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..++++++|+|.++.-+..... .+..+...... ..+++++.++.|.... ....+. ...+....
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~i~~~~k~d~~~~--~~~~~~--------~~~~~~~~ 136 (166)
T d1g16a_ 69 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETR--VVTADQ--------GEALAKEL 136 (166)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTC--CSCHHH--------HHHHHHHH
T ss_pred HHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccC--cceeeeecchhhhhhh--hhhHHH--------HHHHHHhc
Confidence 12345789999999987332222222 12222222222 2367788899887654 222222 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+..++ .+|++.+.++.++++.+-+.+.+
T Consensus 137 ~~~~~------~~Sa~~~~~v~e~f~~l~~~i~~ 164 (166)
T d1g16a_ 137 GIPFI------ESSAKNDDNVNEIFFTLAKLIQE 164 (166)
T ss_dssp TCCEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCeEE------EECCCCCCCHHHHHHHHHHHHHh
Confidence 44444 56788899999999887776543
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.8e-13 Score=105.64 Aligned_cols=159 Identities=14% Similarity=0.122 Sum_probs=90.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|+|||||++.+++... ..... .+............. ....+.++|++|... ......
T Consensus 4 fKivlvG~~~vGKTsLi~r~~~~~f-~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-----------~~~~~~ 70 (167)
T d1z08a1 4 FKVVLLGEGCVGKTSLVLRYCENKF-NDKHI-TTLGASFLTKKLNIGGKRVNLAIWDTAGQER-----------FHALGP 70 (167)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCC-CSSCC-CCCSCEEEEEEEESSSCEEEEEEEECCCC------------------C
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-Ccccc-cccccchheeeeccCCccceeeeeccCCcce-----------ecccch
Confidence 5899999999999999999885442 22111 111112222222221 135677999999654 222334
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+.++|++++|+|.+++-+-.. ..++..+....... .++++|.||.|+........++ ...+....+
T Consensus 71 ~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~--~~~ilvgnK~Dl~~~~~v~~~e---------~~~~a~~~~ 139 (167)
T d1z08a1 71 IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVSIQE---------AESYAESVG 139 (167)
T ss_dssp CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSCHHH---------HHHHHHHTT
T ss_pred hhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccc--cceeeeccccccccccccchHH---------HHHHHHHcC
Confidence 45678999999999873333222 22333333333333 2778889999976431011111 223344444
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..++ .+|++.+.++.+++..|-+.+
T Consensus 140 ~~~~------e~Sak~~~~v~e~F~~l~~~i 164 (167)
T d1z08a1 140 AKHY------HTSAKQNKGIEELFLDLCKRM 164 (167)
T ss_dssp CEEE------EEBTTTTBSHHHHHHHHHHHH
T ss_pred CeEE------EEecCCCcCHHHHHHHHHHHH
Confidence 4443 568888999999988766543
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.7e-13 Score=104.08 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=88.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++.. |.......+.........+.. ++ ..+.++||+|... +....
T Consensus 7 fKi~vvG~~~vGKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~~~ 73 (170)
T d2g6ba1 7 FKVMLVGDSGVGKTCLLVRFKDGA-FLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQER-----------FRSVT 73 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC------------------
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC-CCcccccceeeeeeEEEEEEe-cCcEEEEEEEECCCchh-----------hHHHH
Confidence 589999999999999999887543 211111111122222223333 44 3678999999544 22223
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.......|++++|+|.++.-+... ...+..+....... .++++|.||+|.........+ . ...+....
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~d~~~~~~v~~~-~--------~~~~~~~~ 142 (170)
T d2g6ba1 74 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHERVVKRE-D--------GEKLAKEY 142 (170)
T ss_dssp -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSCCCSCHH-H--------HHHHHHHH
T ss_pred HHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCC--ceEEEEEeeechhhcccccHH-H--------HHHHHHHc
Confidence 344567899999999873322222 12222232322222 378888999998754111111 1 22333444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ ..|++++.++.++++.|-+.+
T Consensus 143 ~~~~~------e~Sak~g~gi~e~f~~l~~~i 168 (170)
T d2g6ba1 143 GLPFM------ETSAKTGLNVDLAFTAIAKEL 168 (170)
T ss_dssp TCCEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEE------EEeCCCCcCHHHHHHHHHHHc
Confidence 44444 567888899999988776544
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=4.7e-14 Score=109.82 Aligned_cols=157 Identities=16% Similarity=0.164 Sum_probs=90.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|||..|||||||++.+++... ..... .+.+.......+.. ++ ..+.++|++|..+.... .
T Consensus 5 ~Ki~vvG~~~vGKTsLi~~~~~~~~-~~~~~-~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~e~~~~~-----------~ 70 (175)
T d2f9la1 5 FKVVLIGDSGVGKSNLLSRFTRNEF-NLESK-STIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRI-----------T 70 (175)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC-CC----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCC-----------C
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-CCccc-ccccceeeeEEEEE-CCEEEEEEecccCCcHHHHHH-----------H
Confidence 5899999999999999999886542 11111 12222223333333 43 36779999996442211 1
Q ss_pred hccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.......+++++|+|.++.-+-. ....+..+.......+ |+++|.||+|+........+ . ........
T Consensus 71 ~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~--piilvgnK~Dl~~~~~~~~~-~--------~~~~~~~~ 139 (175)
T d2f9la1 71 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI--VIMLVGNKSDLRHLRAVPTD-E--------ARAFAEKN 139 (175)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHH-H--------HHHHHHHT
T ss_pred HHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCC--cEEEEEeeecccccccchHH-H--------HHHhhccc
Confidence 11234679999999987332222 2234455555544443 89999999998643111111 1 12223333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
+..++ .+|+..+.++.++++.+-..
T Consensus 140 ~~~~~------e~Sa~~g~~i~e~f~~l~~~ 164 (175)
T d2f9la1 140 NLSFI------ETSALDSTNVEEAFKNILTE 164 (175)
T ss_dssp TCEEE------ECCTTTCTTHHHHHHHHHHH
T ss_pred CceEE------EEecCCCcCHHHHHHHHHHH
Confidence 33443 46788889999987765443
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.48 E-value=5.2e-14 Score=108.69 Aligned_cols=158 Identities=19% Similarity=0.138 Sum_probs=89.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
+.+|+|||..|+|||||++.|.+... ..... .+............ + ...+.++||+|..... ..
T Consensus 4 ~~Ki~lvG~~~vGKTsli~rl~~~~f-~~~~~-~t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~-----------~~ 69 (167)
T d1z0ja1 4 ELKVCLLGDTGVGKSSIMWRFVEDSF-DPNIN-PTIGASFMTKTVQY-QNELHKFLIWDTAGLERFR-----------AL 69 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC-CTTCC-CCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------GG
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCC-Ccccc-cccccccccccccc-cccccceeeeecCCchhhh-----------HH
Confidence 47999999999999999999985542 22111 11111111122222 2 2345689999965421 11
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...+++++++|++++-+-... .++..+....... .++++|.||+|+.... ....+. ...+...
T Consensus 70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~-~v~~~~--------~~~~~~~ 138 (167)
T d1z0ja1 70 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDVR-EVMERD--------AKDYADS 138 (167)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGGC-CSCHHH--------HHHHHHH
T ss_pred HHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCc--ceEEEecccchhcccc-chhHHH--------HHHHHHH
Confidence 12234578999999998733222222 2222333333333 4888999999986431 111111 2233444
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.+..++ .+|++.+.++.+++..|.+.
T Consensus 139 ~~~~~~------e~SAk~~~nV~e~f~~l~~~ 164 (167)
T d1z0ja1 139 IHAIFV------ETSAKNAININELFIEISRR 164 (167)
T ss_dssp TTCEEE------ECBTTTTBSHHHHHHHHHHH
T ss_pred cCCEEE------EEecCCCCCHHHHHHHHHHh
Confidence 444333 56888899999998876554
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.1e-13 Score=107.52 Aligned_cols=158 Identities=16% Similarity=0.108 Sum_probs=90.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... ..... .+.........+.. + ...+.++||+|... +....
T Consensus 6 ~KI~lvG~~~vGKTsll~~~~~~~~-~~~~~-~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~-----------~~~~~ 71 (174)
T d2bmea1 6 FKFLVIGNAGTGKSCLLHQFIEKKF-KDDSN-HTIGVEFGSKIINV-GGKYVKLQIWDTAGQER-----------FRSVT 71 (174)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-CTTCC-CCSEEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-Ccccc-cccccceeeEEEEe-cCcceeEEEEECCCchh-----------hhhhH
Confidence 5899999999999999999885432 22111 11222222222222 2 23577999999543 22233
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
......++++++|+|.++.-+-.. ...+..+....... .|+++|.||+|..... ....+. ...+....
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piivv~nK~D~~~~~-~~~~~~--------~~~~~~~~ 140 (174)
T d2bmea1 72 RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDADR-EVTFLE--------ASRFAQEN 140 (174)
T ss_dssp HTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGC-CSCHHH--------HHHHHHHT
T ss_pred HHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCc--eEEEEEEecccccchh-chhhhH--------HHHHHHhC
Confidence 445668899999999872222111 22333333333333 3899999999975431 111111 12233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+-.++ .+|++.+.++++++..+-+.+
T Consensus 141 ~~~~~------e~Sak~~~gi~e~f~~l~~~i 166 (174)
T d2bmea1 141 ELMFL------ETSALTGENVEEAFVQCARKI 166 (174)
T ss_dssp TCEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEE------EeeCCCCcCHHHHHHHHHHHH
Confidence 33333 568888899999987765543
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.9e-13 Score=105.85 Aligned_cols=162 Identities=22% Similarity=0.192 Sum_probs=90.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
++.+|+|||..||||||||+.+++.. |..... +.........+.. ++ ..+.++|++|..... ....
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~-f~~~~~--~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~--------~~~~ 71 (171)
T d2erya1 4 EKYRLVVVGGGGVGKSALTIQFIQSY-FVTDYD--PTIEDSYTKQCVI-DDRAARLDILDTAGQEEFG--------AMRE 71 (171)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSC-CCSSCC--TTCCEEEEEEEEE-TTEEEEEEEEECC----CC--------HHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC-CCcccC--cccccceeeeeee-ccccccccccccccccccc--------cccc
Confidence 34699999999999999999988643 222111 1111222222333 33 367899999976532 1111
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.....+|++++|+|.++.-+-.. ..++..+...... ...++++|.||+|+........+ . ...+..
T Consensus 72 ---~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~~~v~~~-~--------~~~~~~ 138 (171)
T d2erya1 72 ---QYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDR-DEFPMILIGNKADLDHQRQVTQE-E--------GQQLAR 138 (171)
T ss_dssp ---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCSEEEEEECTTCTTSCSSCHH-H--------HHHHHH
T ss_pred ---ccccccceEEEeeccccccchhhHHHHhHHHHhhccc-CCCCEEEEEeccchhhhccchHH-H--------HHHHHH
Confidence 11235699999999873322222 2233333333322 12378899999997643101111 1 223444
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
..+..|+ .+|++++.++.+++..+-+.+..
T Consensus 139 ~~~~~~~------e~Sak~~~~i~e~f~~l~~~i~k 168 (171)
T d2erya1 139 QLKVTYM------EASAKIRMNVDQAFHELVRVIRK 168 (171)
T ss_dssp HTTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HcCCEEE------EEcCCCCcCHHHHHHHHHHHHHH
Confidence 4444443 56888899999999988776643
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.48 E-value=9.2e-14 Score=107.91 Aligned_cols=158 Identities=15% Similarity=0.148 Sum_probs=73.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.|++... .... ..+.+.......+.. ++ ..+.++||+|... +....
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~~-~~~~-~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~e~-----------~~~~~ 72 (173)
T d2fu5c1 7 FKLLLIGDSGVGKTCVLFRFSEDAF-NSTF-ISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER-----------FRTIT 72 (173)
T ss_dssp EEEEEECCCCC-----------------CH-HHHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------C
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-CCcc-CccccceEEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHH
Confidence 4899999999999999999986542 1111 111222333333444 44 3567899999543 22333
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+.+++++++|+|.+++.+-... .++..+......+ .++++|.||.|.........++ ........
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~D~~~~~~~~~~~---------~~~~~~~~ 141 (173)
T d2fu5c1 73 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVSKER---------GEKLALDY 141 (173)
T ss_dssp CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSCHHH---------HHHHHHHH
T ss_pred HHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCC--ceEEEEEecccchhhcccHHHH---------HHHHHHhc
Confidence 4456788999999998744332222 2233343333333 3888999999987541111111 12233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ ..|+..+.++.++++.|...+
T Consensus 142 ~~~~~------e~Sa~~g~gv~e~f~~l~~~i 167 (173)
T d2fu5c1 142 GIKFM------ETSAKANINVENAFFTLARDI 167 (173)
T ss_dssp TCEEE------ECCC---CCHHHHHHHHHHHH
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 44444 467788899999988776554
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.47 E-value=9.6e-13 Score=101.53 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=93.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+.+|+|||.+|||||||+|.|++.... . ...+.......... ++..+.++|++|.... .....
T Consensus 5 e~kI~ivG~~~vGKSSLi~~~~~~~~~----~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~ 67 (169)
T d1upta_ 5 EMRILILGLDGAGKTTILYRLQVGEVV----T-TIPTIGFNVETVTY-KNLKFQVWDLGGLTSI-----------RPYWR 67 (169)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC----C-CCCCSSEEEEEEEE-TTEEEEEEEECCCGGG-----------GGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc----c-eecccceeeeeecc-CceEEEEeeccccccc-----------cccch
Confidence 379999999999999999999977541 1 11222223333333 6778889999886542 11222
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHH-HHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
......++++++++.....+...... +...... ......+++++.||.|+... ....+.... +. .....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iv~nk~Dl~~~--~~~~~i~~~-----~~--~~~~~ 137 (169)
T d1upta_ 68 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE-EELRKAILVVFANKQDMEQA--MTSSEMANS-----LG--LPALK 137 (169)
T ss_dssp GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----HT--GGGCT
T ss_pred hhhhhhhhhhhhhhhhhcchhhhccchhhhhhhh-hccccceEEEEEeecccccc--ccHHHHHHH-----HH--HHHHh
Confidence 33456788888888763333322222 1111111 11223478899999998765 322222221 10 01111
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
...+.+ ..+|+.++.++.++++.|.+.++
T Consensus 138 ~~~~~~---~~~SA~~g~gv~e~~~~l~~~l~ 166 (169)
T d1upta_ 138 DRKWQI---FKTSATKGTGLDEAMEWLVETLK 166 (169)
T ss_dssp TSCEEE---EECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCCEE---EEEeCCCCCCHHHHHHHHHHHHH
Confidence 111111 26788899999999998877654
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=3.2e-13 Score=104.18 Aligned_cols=158 Identities=19% Similarity=0.164 Sum_probs=88.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
+.+|+|||..|+|||||++.+++.. |.. ....|+...+......++ ..+.++|++|..... ....
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~-f~~---~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~--------~~~~- 68 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKR-FIW---EYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI--------QREG- 68 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC-CCS---CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH--------HHHH-
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCC-CCC---ccCCceeccccccccccccceEEEEeecccccccc--------cchh-
Confidence 4799999999999999999998644 222 122233333322222244 467799999975421 1111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHH-HHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAV-HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.+..++++++|+|++++-+-.....+ ........ ....++++|.||+|+........++ ...+...
T Consensus 69 ---~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~r~V~~~e---------~~~~a~~ 135 (168)
T d2atva1 69 ---HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEE---------GEKLATE 135 (168)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred ---hhcccccceeecccCCccchhhhhhhccccccccc-ccCcceeeeccchhhhhhccCcHHH---------HHHHHHH
Confidence 12356999999998844333332222 22222222 1223899999999975430011111 2223333
Q ss_pred cCCceEEecCCCcccccchh-HHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~ 208 (363)
.+..|+ .+|++++. ++.+++..+-+.+
T Consensus 136 ~~~~~~------e~Saktg~gnV~e~F~~l~~~i 163 (168)
T d2atva1 136 LACAFY------ECSACTGEGNITEIFYELCREV 163 (168)
T ss_dssp HTSEEE------ECCTTTCTTCHHHHHHHHHHHH
T ss_pred hCCeEE------EEccccCCcCHHHHHHHHHHHH
Confidence 344443 56777776 5888887655443
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=3.8e-13 Score=106.14 Aligned_cols=165 Identities=18% Similarity=0.126 Sum_probs=93.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
++|+|+|..|+|||||++.+++.. |.... ..|+.... ..... ++ ..+.++||+|.... ...
T Consensus 4 iKvvllG~~~vGKTSli~r~~~~~-f~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~-----------~~~ 67 (191)
T d2ngra_ 4 IKCVVVGDGAVGKTCLLISYTTNK-FPSEY---VPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDY-----------DRL 67 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC-CCSSC---CCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------TTT
T ss_pred eEEEEECCCCcCHHHHHHHHHhCC-CCCCc---CCceeeecceeEee-CCceeeeeccccccchhh-----------hhh
Confidence 799999999999999999988544 32221 12222222 22222 33 46789999996542 223
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccC---C-CchHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE---C-PKPLKE 171 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~---~-~~~~~~ 171 (363)
....+...|++++|+|++++-+-... ..+.........+ .++++|.||+|+.... ...+...... . .+....
T Consensus 68 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~--~~i~lvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~ 144 (191)
T d2ngra_ 68 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK--TPFLLVGTQIDLRDDP-STIEKLAKNKQKPITPETAEK 144 (191)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTT--CCEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHHHH
T ss_pred hhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCC--CceEEEeccccccccc-hhhhhhhhcccccccHHHHHH
Confidence 34456789999999999844332222 1222222222333 3899999999987551 1111111110 0 011223
Q ss_pred HHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+....+...++ ++|++.+.+++++++.+-..+
T Consensus 145 ~~~~~~~~~~~-----e~SAk~~~~V~e~f~~l~~~~ 176 (191)
T d2ngra_ 145 LARDLKAVKYV-----ECSALTQKGLKNVFDEAILAA 176 (191)
T ss_dssp HHHHTTCSCEE-----ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCCeEE-----EEeCCCCcCHHHHHHHHHHHH
Confidence 33343332222 568888999999988665543
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.47 E-value=1.9e-13 Score=112.13 Aligned_cols=114 Identities=29% Similarity=0.323 Sum_probs=82.8
Q ss_pred cEEEEEcCCCCchHHHHHHhh---ccccccccc-------------CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSIL---GRKAFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~---g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (363)
++|+|+|+.|+|||||+.+|+ |.....+.. .....|+......+.| ++..++++||||..++
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~-~~~~~n~iDtPGh~dF- 80 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGDF- 80 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGGG-
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc-cccceeEEccCchhhh-
Confidence 479999999999999999984 221111100 1133456666677777 8999999999998773
Q ss_pred CChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
..+....+. -+|++++|+|+...........++.+... +. |.++++||+|..
T Consensus 81 ------~~e~~~al~----~~D~avlvvda~~Gv~~~t~~~~~~~~~~-~~----p~~i~iNk~D~~ 132 (267)
T d2dy1a2 81 ------VGEIRGALE----AADAALVAVSAEAGVQVGTERAWTVAERL-GL----PRMVVVTKLDKG 132 (267)
T ss_dssp ------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CEEEEEECGGGC
T ss_pred ------hhhhhhhhc----ccCceEEEeeccCCccchhHHHHHhhhhc-cc----cccccccccccc
Confidence 233333333 45899999999888888888888877764 22 899999999974
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.46 E-value=2.9e-13 Score=104.42 Aligned_cols=157 Identities=22% Similarity=0.225 Sum_probs=87.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.+++.. |.... ..|....+. .+.. ++ ..+.++|++|.... ..+...
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~-f~~~~---~~T~~~~~~~~~~~-~~~~~~l~i~d~~g~~~~--------~~~~~~ 71 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMYDE-FVEDY---EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY--------AAIRDN 71 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCSCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCC---C--------HHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhCC-CCccc---CCcccccccccccc-ccccccccccccccccch--------hhhhhh
Confidence 699999999999999999987543 22211 112222222 2223 44 35678999996652 112221
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.+..++++++|+|.++.-+-.. ..++..+...... ...|+++|.||+|+........++ ...+...
T Consensus 72 ---~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piiivgnK~Dl~~~~~v~~~~---------~~~~~~~ 138 (168)
T d1u8za_ 72 ---YFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE---------AKNRADQ 138 (168)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred ---cccccceeEEEeeccchhhhhhHHHHHHHHHHhhCC-CCCcEEEEeccccccccccccHHH---------HHHHHHH
Confidence 2235699999999873333222 2334444443321 123789999999975431011111 2223334
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ .+|++++.++++++..+-+.+
T Consensus 139 ~~~~~~------e~Sak~g~gv~e~f~~l~~~i 165 (168)
T d1u8za_ 139 WNVNYV------ETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp HTCEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCeEE------EEcCCCCcCHHHHHHHHHHHH
Confidence 344433 468888999999988665443
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=5.7e-14 Score=109.12 Aligned_cols=159 Identities=13% Similarity=0.092 Sum_probs=91.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|||..|||||||++.+++... ..... ...+............ ...+.++|++|....... ..
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~~ 70 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRF-QPVHD-LTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI-----------TR 70 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC-CC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC-----------CH
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCC-CCCcc-cceeeccceeeeeeeeeEEEEEeecccCccchhhH-----------HH
Confidence 4899999999999999999886542 11111 1122222222333311 346789999996553211 11
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
......|++++|+|+++.-+-.. ..++..+......+. +++||.||+|.........+ . ...+....+
T Consensus 71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~--piilv~nK~D~~~~~~~~~~-~--------~~~~a~~~~ 139 (173)
T d2a5ja1 71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNM--VIMLIGNKSDLESRRDVKRE-E--------GEAFAREHG 139 (173)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHH-H--------HHHHHHHHT
T ss_pred HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCC--eEEEEecCCchhhhhhhHHH-H--------HHHHHHHcC
Confidence 22346799999999873333222 234444555444443 88999999997543101111 1 222333334
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..++ .+|++.+.++.+++..+.+.+
T Consensus 140 ~~~~------e~Sa~tg~~V~e~f~~i~~~i 164 (173)
T d2a5ja1 140 LIFM------ETSAKTACNVEEAFINTAKEI 164 (173)
T ss_dssp CEEE------EECTTTCTTHHHHHHHHHHHH
T ss_pred CEEE------EecCCCCCCHHHHHHHHHHHH
Confidence 3433 578889999999887665543
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=6e-14 Score=108.66 Aligned_cols=157 Identities=19% Similarity=0.167 Sum_probs=90.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|||..|+|||||++.|++.. |...... +............ . ...+.++|++|.... ....
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~-f~~~~~~-t~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~-----------~~~~ 72 (170)
T d1r2qa_ 7 FKLVLLGESAVGKSSLVLRFVKGQ-FHEFQES-TIGAAFLTQTVCL-DDTTVKFEIWDTAGQERY-----------HSLA 72 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCTTCCC-CSSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------GGGH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC-CCccccc-ccccccccceeec-cceEEEEEeccCCCchhh-----------hhhH
Confidence 589999999999999999998544 2222211 1122222222222 2 245779999996542 1111
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..++++++++|.++.-+-.. ..++..+......+. ++++|.||+|+........+ . ...+....
T Consensus 73 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilvgnK~Dl~~~~~v~~e-~--------~~~~~~~~ 141 (170)
T d1r2qa_ 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI--VIALSGNKADLANKRAVDFQ-E--------AQSYADDN 141 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGCCSCHH-H--------HHHHHHHT
T ss_pred HHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCc--eEEeecccccccccccccHH-H--------HHHHHHhc
Confidence 223457899999999873332222 233344444444333 78899999997543111111 1 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
+-.++ .+|++.+.++.+++..|-+.
T Consensus 142 ~~~~~------e~SAk~g~~V~e~f~~l~~~ 166 (170)
T d1r2qa_ 142 SLLFM------ETSAKTSMNVNEIFMAIAKK 166 (170)
T ss_dssp TCEEE------ECCTTTCTTHHHHHHHHHHT
T ss_pred CCEEE------EeeCCCCCCHHHHHHHHHHH
Confidence 33333 57888899999998877543
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=2.8e-13 Score=106.24 Aligned_cols=159 Identities=14% Similarity=0.074 Sum_probs=88.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|||||||++.+++... .... ..+............. ....+.++||+|...... ...
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f-~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~~~ 69 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKF-SNQY-KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS-----------LGV 69 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC-CSSC-CCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC-----------SCC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-CCCc-CCccceeeeeeeeeeCCceEEEEeeecCCcccccc-----------ccc
Confidence 5899999999999999999986542 2211 1111122222222221 234677899999654221 112
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccc--cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.....++++++++|.++.-+... ..++..+....... ...|+++|.||+|+... ....+. .......
T Consensus 70 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~--~~~~~~--------~~~~~~~ 139 (184)
T d1vg8a_ 70 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKR--------AQAWCYS 139 (184)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHH--------HHHHHHH
T ss_pred ccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc--chhHHH--------HHHHHHH
Confidence 33457799999999862222221 23344444443211 12389999999997644 211111 1112222
Q ss_pred c-CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 176 C-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 176 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
. +..++ .+|++++.++.++++.+-+.
T Consensus 140 ~~~~~~~------e~Sak~~~gI~e~f~~l~~~ 166 (184)
T d1vg8a_ 140 KNNIPYF------ETSAKEAINVEQAFQTIARN 166 (184)
T ss_dssp TTSCCEE------ECBTTTTBSHHHHHHHHHHH
T ss_pred hcCCeEE------EEcCCCCcCHHHHHHHHHHH
Confidence 1 22332 46888899999998876443
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.4e-12 Score=101.16 Aligned_cols=159 Identities=18% Similarity=0.089 Sum_probs=90.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|||..|||||||++.+++.. |..... .+............ .+ ..+.++|++|... .....
T Consensus 7 ~KI~vvG~~~vGKSSli~~~~~~~-~~~~~~-~t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~-----------~~~~~ 72 (174)
T d1wmsa_ 7 FKVILLGDGGVGKSSLMNRYVTNK-FDTQLF-HTIGVEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FRSLR 72 (174)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC-CCC-----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-CCCccc-cceeeeeeeeeeee-cCceeeEeeecccCcce-----------ehhhh
Confidence 489999999999999999988543 222111 11222222222232 33 4567999998543 12223
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccc--cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
......++++++++|.+...+-.. ..++..+....... ...|+++|.||+|+... ..-.+. ...+..
T Consensus 73 ~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~--~v~~~~--------~~~~~~ 142 (174)
T d1wmsa_ 73 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER--QVSTEE--------AQAWCR 142 (174)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC--SSCHHH--------HHHHHH
T ss_pred hhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhc--cCcHHH--------HHHHHH
Confidence 344567899999999873333222 23344444443211 12389999999998643 111111 223333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
..+...++ .+|++.+.++.++++.+-+.
T Consensus 143 ~~~~~~~~-----e~Sak~~~gI~e~f~~l~~~ 170 (174)
T d1wmsa_ 143 DNGDYPYF-----ETSAKDATNVAAAFEEAVRR 170 (174)
T ss_dssp HTTCCCEE-----ECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCeEE-----EEcCCCCcCHHHHHHHHHHH
Confidence 33322222 56888899999998766543
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=9.8e-13 Score=101.82 Aligned_cols=161 Identities=20% Similarity=0.202 Sum_probs=89.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc-cccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.+++... +......... ......+.. ++ ..+.++|+++... ...+ .
T Consensus 4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~~~~~~d~~~~~g--------~e~~--~ 70 (172)
T d2g3ya1 4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGE--DTYERTLMV-DGESATIILLDMWENKG--------ENEW--L 70 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCT--TEEEEEEEE-TTEEEEEEEECCTTTTH--------HHHH--H
T ss_pred EEEEEECCCCcCHHHHHHHHHhCcCCccccccceee--ecceeeecc-CCceeeeeeeccccccc--------cccc--c
Confidence 5899999999999999999986543 1111111111 111222233 33 3456888876332 1122 1
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|+++.-+-... .++..+....+ ....|+++|.||+|+........++ ...+...
T Consensus 71 ~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~v~~~~---------~~~~a~~ 140 (172)
T d2g3ya1 71 HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSE---------GRACAVV 140 (172)
T ss_dssp HHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred ccccccccceeeeeecccccchhhhhhhhhhhhhhccc-cCCceEEEEeccccccccccccHHH---------HHHHHHH
Confidence 23456788999999998733222221 12222222211 1123899999999976431111111 1223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.+..++ .+|++.+.+++++++.+-+.+.
T Consensus 141 ~~~~~~------e~Sak~g~~i~~~f~~l~~~i~ 168 (172)
T d2g3ya1 141 FDCKFI------ETSAAVQHNVKELFEGIVRQVR 168 (172)
T ss_dssp HTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred cCCeEE------EEeCCCCcCHHHHHHHHHHHHH
Confidence 333333 4688889999999887766553
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.9e-13 Score=106.39 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=88.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe--EEEEee-----------CCcEEEEEeCCCCCCCCCCh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLK-----------DGQVVNVIDTPGLFDLSAGS 86 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~-----------~~~~~~l~DtpG~~~~~~~~ 86 (363)
.+|+|+|..|+|||||++.|++... .... ..+....+ ..+... ....+.++||+|.
T Consensus 6 ~Ki~ivG~~~vGKTsLi~~l~~~~~-~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~------- 74 (186)
T d2f7sa1 6 IKLLALGDSGVGKTTFLYRYTDNKF-NPKF---ITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ------- 74 (186)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCC-CCEE---EEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH-------
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCC-CCcc---CCcccceeeEEEEEEecccccccccccceEEeccccCCcc-------
Confidence 6899999999999999999986542 1111 11111111 111110 0135789999983
Q ss_pred HHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHH-HHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~-~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
+.+.......+.+++++++|+|+++. .....+. ++...... ....++++|.||.|+... ..+..
T Consensus 75 ----e~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~--~~v~~---- 141 (186)
T d2f7sa1 75 ----ERFRSLTTAFFRDAMGFLLMFDLTSQ---QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ--REVNE---- 141 (186)
T ss_dssp ----HHHHHHHHHHHTTCCEEEEEEETTCH---HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG--CCSCH----
T ss_pred ----hhhHHHHHHHHhcCCEEEEEEecccc---ccceeeeeccchhhhhccCCCceEEEEeeeccchhh--hcchH----
Confidence 23333333345678999999998722 2222222 22222111 112378889999998643 11100
Q ss_pred CCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 164 ECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+....+....+..++ .+|++.+.++.++++.+-+.+
T Consensus 142 ---~e~~~~~~~~~~~~~------e~Sak~~~~i~e~f~~l~~~i 177 (186)
T d2f7sa1 142 ---RQARELADKYGIPYF------ETSAATGQNVEKAVETLLDLI 177 (186)
T ss_dssp ---HHHHHHHHHTTCCEE------EEBTTTTBTHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 012334444444443 568888899999998776654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.5e-13 Score=103.93 Aligned_cols=160 Identities=19% Similarity=0.177 Sum_probs=91.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE-EEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|||..|+|||||++.+++.. |... ...+....... +... ....+.++|+.|...... +...
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~-f~~~---~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~ 70 (167)
T d1c1ya_ 3 EYKLVVLGSGGVGKSALTVQFVQGI-FVEK---YDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA--------MRDL 70 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC-CCCS---CCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT--------HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC-CCCc---cCCccccccceeEEeeeeEEEeccccccCcccccc--------cccc
Confidence 3689999999999999999988554 2221 11222222221 2221 234678999999765321 1111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.+..+|++++|+|++++-+-.. ..++..+....+. ...++++|.||+|+........++ ...+...
T Consensus 71 ---~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~~~~~~~~---------~~~~~~~ 137 (167)
T d1c1ya_ 71 ---YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGKEQ---------GQNLARQ 137 (167)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred ---cccccceeEEeeeccchhhhHhHHHHHHHHHHhcCC-CCCeEEEEEEecCcccccccchhH---------HHHHHHH
Confidence 2235699999999974333222 2334444443321 123889999999986541111111 1223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+..++ .+|++++.++.++++.+-+.+
T Consensus 138 ~~~~~~~-----e~Sak~g~gv~e~F~~l~~~i 165 (167)
T d1c1ya_ 138 WCNCAFL-----ESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTSCEEE-----ECBTTTTBSHHHHHHHHHHHH
T ss_pred hCCCEEE-----EEcCCCCcCHHHHHHHHHHHh
Confidence 3333332 578889999999988776543
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.43 E-value=6.3e-13 Score=107.69 Aligned_cols=138 Identities=17% Similarity=0.229 Sum_probs=88.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhh---cccc------------------c--------ccccCCCCCceeeEeEEEEeeCCc
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL---GRKA------------------F--------KASAGSSGVTKTCEMKTTVLKDGQ 69 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~---g~~~------------------~--------~~~~~~~~~t~~~~~~~~~~~~~~ 69 (363)
.++|+++|+.++|||||+..|+ |... + ....-..++|+......+.+ .++
T Consensus 6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~ 84 (239)
T d1f60a3 6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKY 84 (239)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SSE
T ss_pred ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc-CCE
Confidence 4799999999999999998884 2100 0 00011245666666677777 789
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-------CCHHHHHHHHHHHHHhccccccceEE
Q 017924 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMIV 142 (363)
Q Consensus 70 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~i~ 142 (363)
.++|+||||..+ +...+..+...+|++++|+++... .....+..+..+. .+|- +++++
T Consensus 85 ~i~iiDtPGH~d-----------f~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~-~~gv---~~iiv 149 (239)
T d1f60a3 85 QVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-TLGV---RQLIV 149 (239)
T ss_dssp EEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-HTTC---CEEEE
T ss_pred EEEEEECCCcHH-----------HHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHH-HcCC---CeEEE
Confidence 999999999776 334444566678999999998611 1112333333333 3343 26888
Q ss_pred EEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 143 VFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 143 v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
++||+|....+...+++.... +..++...+
T Consensus 150 ~iNKmD~~~~d~~~~~~~~~e-----l~~~l~~~~ 179 (239)
T d1f60a3 150 AVNKMDSVKWDESRFQEIVKE-----TSNFIKKVG 179 (239)
T ss_dssp EEECGGGGTTCHHHHHHHHHH-----HHHHHHHHT
T ss_pred EEECCCCCCCCHHHHHHHHHH-----HHHHHHhcC
Confidence 999999887644555555555 555655543
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=1.9e-13 Score=105.75 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=89.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.++|+|||..|+|||||++.+++... .... ..+.........+.. ++ ..+.++||+|..... .+.
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f-~~~~-~~t~~~~~~~~~i~~-~~~~~~l~i~d~~g~~~~~--------~~~-- 69 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDF-AENK-EPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFA--------SLA-- 69 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTC-CCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG--------GGH--
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCC-Cccc-cccccceeecccccc-ccccccccccccCCchhHH--------HHH--
Confidence 37999999999999999999885543 1111 111111112222333 33 467899999965421 111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHH-HHHHHHHHhccccccceEEEEeCCCCCCcc--hhhHHHHhccCCCchHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~--~~~l~~~~~~~~~~~~~~~~ 173 (363)
...+...|++++|+|.+++.+-.... ++..+...... ..+++++.||+|+.... +....+ ....+.
T Consensus 70 -~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~v~nk~d~~~~~~~~~v~~~--------~~~~~~ 138 (170)
T d1ek0a_ 70 -PMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDMLQEGGERKVARE--------EGEKLA 138 (170)
T ss_dssp -HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGSSCCCCSCHH--------HHHHHH
T ss_pred -HHHHhccceEEEEEeCCcccchhhhhhhhhhhcccccc--ccceeeeecccccccccchhhhhHH--------HHHHHH
Confidence 12345789999999988443333322 22222332222 23888999999975430 010001 122334
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
...+..|+ .+|++.+.++++++..|-+
T Consensus 139 ~~~~~~~~------e~Sak~g~gV~e~F~~i~~ 165 (170)
T d1ek0a_ 139 EEKGLLFF------ETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp HHHTCEEE------ECCTTTCTTHHHHHHHHHT
T ss_pred HHcCCEEE------EecCCCCcCHHHHHHHHHH
Confidence 44444443 5688889999999886643
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.40 E-value=1.9e-12 Score=99.35 Aligned_cols=161 Identities=9% Similarity=-0.012 Sum_probs=89.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
+||+|+|++|||||||+|.|++... + . ...|.......... .+....++|+.|.... ......
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~~~--~--~-~~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~ 63 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKNDRL--A--T-LQPTWHPTSEELAI-GNIKFTTFDLGGHIQA-----------RRLWKD 63 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCC--C--C-CCCCCSCEEEEECC-TTCCEEEEECCCSGGG-----------GGGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--C--e-eeceeeEeEEEecc-CCeeEEEEeeccchhh-----------hhhHhh
Confidence 5899999999999999999998764 1 1 12233233333333 5667779999885431 122333
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHH---HhccCCCchHHHHHHhc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED---FLGHECPKPLKEILQLC 176 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~---~~~~~~~~~~~~~~~~~ 176 (363)
.....++++++++.++.........+.............+++++.||.|.... ....+ .+.. ..........
T Consensus 64 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~--~~~~~i~~~~~~-~~~~~~~~~~-- 138 (166)
T d2qtvb1 64 YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEAELRSALGL-LNTTGSQRIE-- 138 (166)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC--CCHHHHHHHHTC-SSCCC---CC--
T ss_pred hhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc--CCHHHHHHHhhh-hhhhHHHhhc--
Confidence 45577899999998744333222211111111111233478888999998654 22222 2111 0000000000
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
..+.+ ....+|+.++.++.+++++|.
T Consensus 139 ~~~~~---~~~~~SA~tg~Gv~e~~~~l~ 164 (166)
T d2qtvb1 139 GQRPV---EVFMCSVVMRNGYLEAFQWLS 164 (166)
T ss_dssp SSCCE---EEEEEBTTTTBSHHHHHHHHT
T ss_pred ccCCC---EEEEeeCCCCCCHHHHHHHHh
Confidence 01111 123679999999999999875
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=3.5e-12 Score=99.24 Aligned_cols=165 Identities=16% Similarity=0.113 Sum_probs=90.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee-eEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.++... |... ...|.. ........ ++ ..+.++|++|..... ..
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~-f~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~-----------~~ 66 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDC-FPEN---YVPTVFENYTASFEI-DTQRIELSLWDTSGSPYYD-----------NV 66 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC-CCSS---CCCCSEEEEEEEEEC-SSCEEEEEEEEECCSGGGT-----------TT
T ss_pred eEEEEECCCCcCHHHHHHHHHhCC-CCCc---cCCceeecccccccc-cceEEeecccccccccccc-----------cc
Confidence 689999999999999999887543 2221 112222 22222233 33 456799999965421 12
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCC----CchHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC----PKPLKE 171 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~----~~~~~~ 171 (363)
....+.++|++++|+|+++.-+-... ..+.........+. ++++|.||.|+...... ..+...... .+....
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~--~iilVgnK~Dl~~~~~~-~~~~~~~~~~~V~~~e~~~ 143 (179)
T d1m7ba_ 67 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT--KMLLVGCKSDLRTDVST-LVELSNHRQTPVSYDQGAN 143 (179)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTC--EEEEEEECGGGGGCHHH-HHHHHTTTCCCCCHHHHHH
T ss_pred ccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcc--eEEEEEecccccccchh-hHHHhhhhcCcchHHHHHH
Confidence 23456688999999998733222221 12222222233333 89999999998654111 111111100 011233
Q ss_pred HHHhcCCceEEecCCCcccccchh-HHHHHHHHHHHHH
Q 017924 172 ILQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVI 208 (363)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~ 208 (363)
+....+...++ ++|++.+. +++++++.+-..+
T Consensus 144 ~a~~~~~~~y~-----E~SAk~~~n~i~~~F~~~~~~~ 176 (179)
T d1m7ba_ 144 MAKQIGAATYI-----ECSALQSENSVRDIFHVATLAC 176 (179)
T ss_dssp HHHHHTCSEEE-----ECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCeEE-----EEeCCCCCcCHHHHHHHHHHHH
Confidence 44444443333 56777776 5888888665543
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=9.6e-13 Score=101.54 Aligned_cols=159 Identities=24% Similarity=0.227 Sum_probs=91.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee-EeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
+..+|+|+|..|+|||||++.+++.. |..... .|... ....... ++ ..+.++|++|....... .
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~-~~~~~~---~t~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~--------~ 69 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKI-FVPDYD---PTIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAM--------R 69 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS-CCTTCC---TTCCEEEEEEEEE-TTEEEEEEEEECCSCGGGCSS--------H
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC-CCcccC---cceeecccccccc-ccccccccccccccccccccc--------h
Confidence 34799999999999999999988654 222111 12211 1222233 33 46679999997653211 1
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
. ..+.+++++++|+|++++-+-.. ..++..+.+..+. ...|++++.||+|+........++ ..++.
T Consensus 70 ~---~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~~~v~~e~---------~~~~~ 136 (169)
T d1x1ra1 70 E---QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRDQ---------GKEMA 136 (169)
T ss_dssp H---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHHH---------HHHHH
T ss_pred h---hhhhhccEEEEecccccchhhhccchhhHHHHhhccc-cCccEEEEecccchhhhceeehhh---------HHHHH
Confidence 1 12235699999999873333222 2344444444332 123889999999986541011111 22333
Q ss_pred HhcCCceEEecCCCcccccchh-HHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVI 208 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~ 208 (363)
...+..|+ .+|++.+. ++++++..+-+.+
T Consensus 137 ~~~~~~~~------e~Sak~~~~nV~~~F~~l~~~i 166 (169)
T d1x1ra1 137 TKYNIPYI------ETSAKDPPLNVDKTFHDLVRVI 166 (169)
T ss_dssp HHHTCCEE------EEBCSSSCBSHHHHHHHHHHHH
T ss_pred HHcCCEEE------EEcCCCCCcCHHHHHHHHHHHH
Confidence 44444444 45666554 8999888776654
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3.4e-12 Score=98.76 Aligned_cols=158 Identities=17% Similarity=0.116 Sum_probs=86.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
-+..+|+|+|..|+|||||++.+++... ... ...+.......+.. ++ ..+.++||+|.... .+
T Consensus 3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f-~~~---~~t~~~~~~~~i~v-~~~~~~l~i~Dt~g~~~~---------~~- 67 (175)
T d2bmja1 3 IPELRLGVLGDARSGKSSLIHRFLTGSY-QVL---EKTESEQYKKEMLV-DGQTHLVLIREEAGAPDA---------KF- 67 (175)
T ss_dssp CCEEEEEEECCTTTTHHHHHHHHHHSCC-CCC---CCSSCEEEEEEEEE-TTEEEEEEEEECSSCCCH---------HH-
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCC-CCc---CCccceeEEEEeec-CceEEEEEEeeccccccc---------cc-
Confidence 4568999999999999999999886642 211 11111222222333 44 45778999995531 11
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhcc-ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
+..+|++++|+|++++-+-.. ..+...+...... ....|+++|.||.|........+.. .....+
T Consensus 68 ------~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~-------~~~~~~ 134 (175)
T d2bmja1 68 ------SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGD-------ARARAL 134 (175)
T ss_dssp ------HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCH-------HHHHHH
T ss_pred ------ccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhH-------HHHHHH
Confidence 224699999999883332222 2233334333221 1123788899888764331011000 012223
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.....+..++ .+|++.+.++++++..+-+.
T Consensus 135 ~~~~~~~~~~-----e~SAk~~~~v~~~F~~l~~~ 164 (175)
T d2bmja1 135 CADMKRCSYY-----ETCATYGLNVDRVFQEVAQK 164 (175)
T ss_dssp HHTSTTEEEE-----EEBTTTTBTHHHHHHHHHHH
T ss_pred HHHhCCCeEE-----EeCCCCCcCHHHHHHHHHHH
Confidence 2333332222 56888889999987755443
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.38 E-value=9.9e-13 Score=105.33 Aligned_cols=117 Identities=11% Similarity=0.150 Sum_probs=68.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|||.+|||||||+|.|+|.... .++|.......+.. ++..+.++||||..... . .+...+..
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~~~~------~~tt~~~~~~~~~~-~~~~~~l~D~~g~~~~~---~----~~~~~~~~ 69 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTDSVR------PTVVSQEPLSAADY-DGSGVTLVDFPGHVKLR---Y----KLSDYLKT 69 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSCC------CBCCCSSCEEETTG-GGSSCEEEECCCCGGGT---H----HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC------CeEEecceEEEEEe-CCeEEEEEecccccchh---h----HHHHHHHH
Confidence 48999999999999999999987641 11222222222223 56778899999966421 1 22222222
Q ss_pred cCCCccEEEEEeecCC-CCC-HHHHHHH----HHHHHHhccccccceEEEEeCCCCCCc
Q 017924 100 AKDGIHAFLVVFSVTN-RFS-QEEETAV----HRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~-~~~-~~~~~~l----~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.....+.++++++... ... ......+ ..+....... .|+++|+||+|+...
T Consensus 70 ~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~piiiv~NK~D~~~~ 126 (209)
T d1nrjb_ 70 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG--IDILIACNKSELFTA 126 (209)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTTC
T ss_pred HhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhcc--CCeEEEEEeeccccc
Confidence 3334577777777651 111 2222222 2222222222 389999999998765
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.37 E-value=1.5e-12 Score=100.10 Aligned_cols=120 Identities=13% Similarity=0.077 Sum_probs=68.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|+|||||++.+++... ..... ............... ....+.++|++|.... ......
T Consensus 3 ~Kv~liG~~~vGKTsLl~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 70 (165)
T d1z06a1 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PDRTE-ATIGVDFRERAVDIDGERIKIQLWDTAGQERF----------RKSMVQ 70 (165)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CSSCC-CCCSCCEEEEEEEETTEEEEEEEEECCCSHHH----------HTTTHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-CCccC-cccccccceeeeeeeccceEEEEEeccCchhh----------ccccce
Confidence 5899999999999999999985432 11111 111111111222221 2346678899884321 001112
Q ss_pred ccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+.++|++++|+|++++-+-... .++..+.+.... ...|++||.||.|+...
T Consensus 71 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pi~lvgnK~Dl~~~ 124 (165)
T d1z06a1 71 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSA 124 (165)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGG
T ss_pred eeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccC-CCCeEEEEeccccchhc
Confidence 234578999999998844333332 344444443321 12389999999997643
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.33 E-value=4.8e-12 Score=101.98 Aligned_cols=119 Identities=19% Similarity=0.205 Sum_probs=70.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc-----------------------------cccccCCCCCceeeEeEEEEeeCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA-----------------------------FKASAGSSGVTKTCEMKTTVLKDG 68 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~-----------------------------~~~~~~~~~~t~~~~~~~~~~~~~ 68 (363)
+..+|+|+|+.++|||||+..|+.... +.......+.+.......+.+ ++
T Consensus 2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~ 80 (224)
T d1jnya3 2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK 80 (224)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEec-CC
Confidence 357999999999999999998852110 000112233455555555555 78
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCH-------HHHHHHHHHHHHhccccccceE
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQ-------EEETAVHRLPNLFGKNVFDYMI 141 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~i 141 (363)
..++++||||..+ +...+..+..-+|+.++|+++...... ..+..+..+. .++.. +++
T Consensus 81 ~~i~iiDtPGH~d-----------f~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~-~~~~~---~iI 145 (224)
T d1jnya3 81 YFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-TMGLD---QLI 145 (224)
T ss_dssp CEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-HTTCT---TCE
T ss_pred ceeEEeeCCCcHH-----------HHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHH-HhCCC---ceE
Confidence 8999999999776 333344455677999999998743211 1222222222 23332 688
Q ss_pred EEEeCCCCCCc
Q 017924 142 VVFTGGDDLED 152 (363)
Q Consensus 142 ~v~n~~D~~~~ 152 (363)
+++||+|+...
T Consensus 146 v~iNK~D~~~~ 156 (224)
T d1jnya3 146 VAVNKMDLTEP 156 (224)
T ss_dssp EEEECGGGSSS
T ss_pred EEEEcccCCCc
Confidence 89999998753
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.32 E-value=4.8e-12 Score=101.07 Aligned_cols=119 Identities=14% Similarity=0.173 Sum_probs=66.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
.|+|+|+.|||||||+|.|++... .. .. .+.+.......+....+..+.++|++|... ..... +...
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~-~~-~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~-------~~~~~---~~~~ 68 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQY-RD-TQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHES-------LRFQL---LDRF 68 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC-CC-BC-CCCSCEEEEEECSSTTCCEEEEEECCCCHH-------HHHHH---HHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-Cc-cc-CCeeEEEEEEEEeeeeeeeeeeeecccccc-------ccchh---hhhh
Confidence 799999999999999999997653 11 11 111222222222122456788999998432 11111 2223
Q ss_pred CCCccEEEEEeecCCCCCH--HHHHHH-HHHHHHhccccccceEEEEeCCCCCCc
Q 017924 101 KDGIHAFLVVFSVTNRFSQ--EEETAV-HRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~--~~~~~l-~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
....+++++|+|+++.... .....+ ..+..........|++||.||+|+...
T Consensus 69 ~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a 123 (207)
T d2fh5b1 69 KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 123 (207)
T ss_dssp GGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred hhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence 3567899999998722111 111122 222221111112378899999998754
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.30 E-value=3.6e-12 Score=99.89 Aligned_cols=168 Identities=13% Similarity=0.082 Sum_probs=86.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....||+|||.+|||||||++.|++.......+ +.......+.. ++..+.++|+.+..... ..
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~ 73 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP-----TLHPTSEELTI-AGMTFTTFDLGGHIQAR-----------RV 73 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------C-----CCCCSCEEEEE-TTEEEEEEEECC----C-----------CG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcceec-----ccccceeEEEe-cccccccccccchhhhh-----------hH
Confidence 345899999999999999999999876421111 22222223333 56677788888765432 11
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhc--cccccceEEEEeCCCCCCc-chhhHHHHhccCCCchHH--H
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG--KNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLK--E 171 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~--~ 171 (363)
........+.++++++............ .+..... .....+++++.||.|.... .-..+.+.+......... .
T Consensus 74 ~~~~~~~~~~~~~~~d~~d~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~ 151 (186)
T d1f6ba_ 74 WKNYLPAINGIVFLVDCADHERLLESKE--ELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 151 (186)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHHHHH--HHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCC
T ss_pred HhhhhcccceeeeeeeccCccchHHHHH--HHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhh
Confidence 2233456789999998763322222221 1111111 1123489999999998654 111122222110000000 0
Q ss_pred HHHhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.......+.+ ....+||+++.++.+++++|.+
T Consensus 152 ~~~~~~~~~~---~~~~~SA~tg~Gi~e~~~~l~~ 183 (186)
T d1f6ba_ 152 SLKELNARPL---EVFMCSVLKRQGYGEGFRWMAQ 183 (186)
T ss_dssp CTTTCCSCCE---EEEECBTTTTBSHHHHHHHHHT
T ss_pred hHHHhhcCCC---EEEEEeCCCCCCHHHHHHHHHH
Confidence 0000011111 1236799999999999997764
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.24 E-value=4.8e-12 Score=103.00 Aligned_cols=161 Identities=17% Similarity=0.176 Sum_probs=83.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhh---cccccc--------------------------cccCCCCCceeeEeEEEEeeCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL---GRKAFK--------------------------ASAGSSGVTKTCEMKTTVLKDG 68 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~---g~~~~~--------------------------~~~~~~~~t~~~~~~~~~~~~~ 68 (363)
+.++|+|+|+.++|||||+..|+ |...-. ......+.+.......+.+ .+
T Consensus 23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~ 101 (245)
T d1r5ba3 23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EH 101 (245)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SS
T ss_pred CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc-cc
Confidence 45689999999999999999983 211000 0001112233333333344 67
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCC-------CHHHHHHHHHHHHHhccccccceE
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDYMI 141 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~i 141 (363)
..++++||||..+. ...+..+...+|++++|+++.... ....+..+..+.. ++-. +++
T Consensus 102 ~~i~~iDtPGH~df-----------~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~-~~i~---~ii 166 (245)
T d1r5ba3 102 RRFSLLDAPGHKGY-----------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGIN---HLV 166 (245)
T ss_dssp EEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTCS---SEE
T ss_pred ceeeeecccccccc-----------hhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH-cCCC---eEE
Confidence 78999999997663 333334445779999999986331 1123333333333 3332 688
Q ss_pred EEEeCCCCCCc--chhhHHHHhccCCCchHHHHHHhcCCc----eEEecCCCcccccchhHHHHHHH
Q 017924 142 VVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNR----CVLFDNKTKDEAKGTEQVRQLLS 202 (363)
Q Consensus 142 ~v~n~~D~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~ 202 (363)
+++||+|.... ....+++.+.. ++..+....+. .+. ..+.|+..+.++.++++
T Consensus 167 v~iNKmD~~~~~~~e~~~~ei~~~-----l~~~l~~i~~~~~~~~v~---~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 167 VVINKMDEPSVQWSEERYKECVDK-----LSMFLRRVAGYNSKTDVK---YMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp EEEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHHHCCCHHHHEE---EEECBTTTTBTTSSCCC
T ss_pred EEEEcCCCCccchhHHHHHHHHHH-----HHHHHHHHhCcCcccCCE---EEEeeccCCCCcccchh
Confidence 99999998643 22344555555 44444333211 111 12567777777766544
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.23 E-value=2.4e-11 Score=102.82 Aligned_cols=114 Identities=21% Similarity=0.289 Sum_probs=75.2
Q ss_pred EEEEEcCCCCchHHHHHHhh---cccc-----------cccccCCCCCceeeEeEEEEee---------------CCcEE
Q 017924 21 TVVLLGRTGNGKSATGNSIL---GRKA-----------FKASAGSSGVTKTCEMKTTVLK---------------DGQVV 71 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~---g~~~-----------~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~ 71 (363)
+|+|+|+.|+|||||+++|+ |... .......++.|+......+.+. +.+.+
T Consensus 19 NI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i 98 (341)
T d1n0ua2 19 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLI 98 (341)
T ss_dssp EEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceEE
Confidence 59999999999999999985 2110 0001111233443333333221 23468
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 72 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
+++||||..+.. .+....+. -+|++++|+|+...........++..... + .+.++++||+|..
T Consensus 99 nliDtPGh~dF~-------~ev~~al~----~~D~allVVda~eGv~~qT~~~~~~a~~~-~----~p~i~viNKiDr~ 161 (341)
T d1n0ua2 99 NLIDSPGHVDFS-------SEVTAALR----VTDGALVVVDTIEGVCVQTETVLRQALGE-R----IKPVVVINKVDRA 161 (341)
T ss_dssp EEECCCCCCSSC-------HHHHHHHH----TCSEEEEEEETTTBSCHHHHHHHHHHHHT-T----CEEEEEEECHHHH
T ss_pred EEEcCCCcHHHH-------HHHHHHHh----hcCceEEEEecccCcchhHHHHHHHHHHc-C----CCeEEEEECcccc
Confidence 999999988853 34444433 45999999999878888888888876653 2 2899999999965
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.21 E-value=8e-10 Score=93.12 Aligned_cols=126 Identities=14% Similarity=0.186 Sum_probs=70.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeE-------------------------------------
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMK------------------------------------- 61 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~------------------------------------- 61 (363)
.+|+|||..++|||||||+|+|...+..+....+ +.+...+.
T Consensus 27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (299)
T d2akab1 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 106 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred CeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCC
Confidence 4899999999999999999999886443332111 11111110
Q ss_pred -----------EEEeeCCcEEEEEeCCCCCCCCCCh------HHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHH
Q 017924 62 -----------TTVLKDGQVVNVIDTPGLFDLSAGS------EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETA 124 (363)
Q Consensus 62 -----------~~~~~~~~~~~l~DtpG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~ 124 (363)
.........++++||||+......+ ..+...+..++. ...+++++|.++...++..+ .
T Consensus 107 ~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~---~~~~~il~v~~a~~~~~~~~--~ 181 (299)
T d2akab1 107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT---KENCLILAVSPANSDLANSD--A 181 (299)
T ss_dssp TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHT---STTEEEEEEEESSSCGGGCH--H
T ss_pred CcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhc---CccceeeeecccccchhhhH--H
Confidence 0011112347899999997543211 112222222222 23356777777764444443 2
Q ss_pred HHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 125 VHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 125 l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
+.+++.+.. ...++++|+||+|....
T Consensus 182 ~~~~~~~~~--~~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 182 LKIAKEVDP--QGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHHHCT--TCSSEEEEEECGGGSCT
T ss_pred HHHHHHhCc--CCCceeeEEeccccccc
Confidence 233333321 12379999999998865
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.12 E-value=2.6e-10 Score=96.48 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFK 46 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~ 46 (363)
.+|+|||..++|||||||+|+|...+.
T Consensus 25 P~ivVvG~~ssGKSSliNaLlG~~~lP 51 (306)
T d1jwyb_ 25 PQIVVVGSQSSGKSSVLENIVGRDFLP 51 (306)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCCCC
T ss_pred CeEEEEeCCCCCHHHHHHHHhCCCCCC
Confidence 489999999999999999999987543
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=4.1e-10 Score=89.02 Aligned_cols=113 Identities=16% Similarity=0.095 Sum_probs=67.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|+|..|||||||++.+.-... . ..|+......+.. ....+.++|++|... .......
T Consensus 3 iKivllG~~~vGKTsll~r~~f~~~----~---~pTiG~~~~~~~~-~~~~~~~~D~~gq~~-----------~~~~~~~ 63 (200)
T d1zcba2 3 VKILLLGAGESGKSTFLKQMRIIHG----Q---DPTKGIHEYDFEI-KNVPFKMVDVGGQRS-----------ERKRWFE 63 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHS----C---CCCSSEEEEEEEE-TTEEEEEEEECC------------------CTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC----C---CCeeeeEEEEEee-eeeeeeeecccceee-----------ecccccc
Confidence 6999999999999999999831111 1 1133333444444 678889999999543 3334455
Q ss_pred cCCCccEEEEEeecCCCCC--------HHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCC
Q 017924 100 AKDGIHAFLVVFSVTNRFS--------QEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~--------~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~ 151 (363)
.+...++++++++.++... ......+..+..++.. ....|++++.||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 125 (200)
T d1zcba2 64 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE 125 (200)
T ss_dssp SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred cccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhh
Confidence 6678899999998762221 1112223333333221 11238999999999753
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.07 E-value=5.8e-10 Score=87.68 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=68.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+.+|+|+|..|+|||||++.+..... ++.+. ....+.. ....+.++||.|... +.....
T Consensus 2 e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~-----~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~~~ 60 (195)
T d1svsa1 2 EVKLLLLGAGESGKSTIVKQMKIIHE----AGTGI-----VETHFTF-KDLHFKMFDVGGQRS-----------ERKKWI 60 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHS----CCCSE-----EEEEEEE-TTEEEEEEEECCSGG-----------GGGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC----CCccE-----EEEEEEe-eeeeeeeeccccccc-----------cccchh
Confidence 47999999999999999999864332 22221 1222333 677888999999543 344455
Q ss_pred ccCCCccEEEEEeecCCC--C------CHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCC
Q 017924 99 MAKDGIHAFLVVFSVTNR--F------SQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDL 150 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~--~------~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~ 150 (363)
..+..+++++++++.+.. + .......+......+.. ....+++++.||+|..
T Consensus 61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~ 122 (195)
T d1svsa1 61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 122 (195)
T ss_dssp GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhh
Confidence 667889999999986511 1 11112222222222211 1123899999999854
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=2.3e-09 Score=90.36 Aligned_cols=90 Identities=7% Similarity=0.051 Sum_probs=48.4
Q ss_pred CccEEEEEeecCCCCCHHHHHHH-HHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceE
Q 017924 103 GIHAFLVVFSVTNRFSQEEETAV-HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV 181 (363)
Q Consensus 103 ~~~~~l~v~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 181 (363)
.+|.+++|...+ .+.+...+ .-+.+. .-++|+||+|.... ......+.. +...+.......-
T Consensus 167 ~aD~~l~v~~P~---~Gd~iq~~k~gi~e~-------aDi~VvNKaD~~~~--~~~~~~~~~-----~~~al~~~~~~~~ 229 (327)
T d2p67a1 167 MVDCFISLQIAG---GGDDLQGIKKGLMEV-------ADLIVINKDDGDNH--TNVAIARHM-----YESALHILRRKYD 229 (327)
T ss_dssp TCSEEEEEECC---------CCCCHHHHHH-------CSEEEECCCCTTCH--HHHHHHHHH-----HHHHHHHSCCSBT
T ss_pred ccceEEEEecCC---Cchhhhhhchhhhcc-------ccEEEEEeecccch--HHHHHHHHH-----HHHHhhhcccCCC
Confidence 468888887654 12222111 122222 45788899998765 333333333 3333333222110
Q ss_pred -EecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 182 -LFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 182 -~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
....+..+|+.++.++++|++.|.+...
T Consensus 230 ~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~ 258 (327)
T d2p67a1 230 EWQPRVLTCSALEKRGIDEIWHAIIDFKT 258 (327)
T ss_dssp TBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence 1112346789999999999999887654
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.97 E-value=2.6e-09 Score=84.19 Aligned_cols=169 Identities=15% Similarity=0.121 Sum_probs=92.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+.+|+|+|..|||||||++.+.... |... .|+......+.. ....+.++|+.|... +.....
T Consensus 2 e~Kiv~lG~~~vGKTsll~r~~~~~-~~~~-----pTiG~~~~~~~~-~~~~~~~~d~~g~~~-----------~~~~~~ 63 (200)
T d2bcjq2 2 ELKLLLLGTGESGKSTFIKQMRIIH-GSGV-----PTTGIIEYPFDL-QSVIFRMVDVGGQRS-----------ERRKWI 63 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHT-SSCC-----CCCSCEEEEEEC-SSCEEEEEECCCSTT-----------GGGGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC-CCCC-----ceeeEEEEEEec-cceeeeecccccccc-----------cccccc
Confidence 4799999999999999999997443 3222 233233333333 567888999999654 223334
Q ss_pred ccCCCccEEEEEeecCCCC--------CHHHHHHHHHHHHHhccc--cccceEEEEeCCCCCCc--chhhHHHHhccCC-
Q 017924 99 MAKDGIHAFLVVFSVTNRF--------SQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLED--HEKTLEDFLGHEC- 165 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~--------~~~~~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~--~~~~l~~~~~~~~- 165 (363)
..+.+.++++++++.++.. .......+.....++... ...+++++.||.|+... ....+..+.....
T Consensus 64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~ 143 (200)
T d2bcjq2 64 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDG 143 (200)
T ss_dssp GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCS
T ss_pred ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccC
Confidence 5567889999999865211 111112222222222211 12388899999986533 0011222111100
Q ss_pred --------CchHHHH-HHh---cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 166 --------PKPLKEI-LQL---CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 166 --------~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..++... ... .....+.+ .+||+++.++.++++.|.+.+.
T Consensus 144 ~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~----~tSAk~~~ni~~vF~~i~~~I~ 195 (200)
T d2bcjq2 144 PQRDAQAAREFILKMFVDLNPDSDKIIYSH----FTCATDTENIRFVFAAVKDTIL 195 (200)
T ss_dssp CSSCHHHHHHHHHHHHHTTCSCTTSCEEEE----ECCTTCHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhcccCCCceEEE----EeEEEcCHhHHHHHHHHHHHHH
Confidence 0001111 111 11222222 4588899999999998877653
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.94 E-value=2.6e-09 Score=85.54 Aligned_cols=113 Identities=14% Similarity=0.122 Sum_probs=71.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|+|..|||||||++.+..... .++ +......+.. ++..+.++|+.|.... ......
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~---~pT-----iG~~~~~~~~-~~~~~~~~D~~Gq~~~-----------r~~w~~ 66 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHV---VLT-----SGIFETKFQV-DKVNFHMFDVGGQRDE-----------RRKWIQ 66 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHC---CCC-----CSCEEEEEEE-TTEEEEEEECCCSTTT-----------TTGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCc---CCC-----CCeEEEEEEE-CcEEEEEEecCcccee-----------ccchhh
Confidence 6999999999999999999853221 122 2222333444 6788899999996542 223345
Q ss_pred cCCCccEEEEEeecCCC--------CCHHHHHHHHHHHHHhccc--cccceEEEEeCCCCCCc
Q 017924 100 AKDGIHAFLVVFSVTNR--------FSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLED 152 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~--------~~~~~~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~ 152 (363)
.+.+.++++++++.+.. ........+..+..++... ...+++|++||+|+...
T Consensus 67 ~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~ 129 (221)
T d1azta2 67 CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE 129 (221)
T ss_dssp GCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred hcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhh
Confidence 56788999999987511 1112222334444444332 12389999999998644
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.83 E-value=1.1e-08 Score=83.20 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
..|+|+|+.|||||||++.|+
T Consensus 1 ~vi~v~G~~GsGKTTLl~~ll 21 (244)
T d1yrba1 1 MIVVFVGTAGSGKTTLTGEFG 21 (244)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHH
Confidence 368999999999999999996
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.83 E-value=2.4e-09 Score=89.69 Aligned_cols=91 Identities=16% Similarity=0.126 Sum_probs=58.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCC-ceeeEeEEEEeeC----------------CcEEEEEeCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKD----------------GQVVNVIDTPGLF 80 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~----------------~~~~~l~DtpG~~ 80 (363)
.+.+|||||.++||||||+|+|++.... .....+. |++.....+...+ ...+.++|.||+.
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~--~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv 86 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSVLG--NPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 86 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTT--STTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCCC--CcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccc
Confidence 3489999999999999999999977541 1233333 3333333333311 1257899999987
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
.......-++.++...+ ..+|++++|+++.
T Consensus 87 ~gA~~g~GLGn~fL~~i----r~~d~lihVV~~f 116 (296)
T d1ni3a1 87 KGASTGVGLGNAFLSHV----RAVDAIYQVVRAF 116 (296)
T ss_dssp CCCCSSSSSCHHHHHHH----TTCSEEEEEEECC
T ss_pred cccccccccHHHHHHHh----hccceeEEEEecc
Confidence 54333333445565554 4679999999875
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.83 E-value=2.8e-09 Score=88.12 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=44.4
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHH
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV 89 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~ 89 (363)
......+|+|||.+|+|||||+|+|.|......+..+| +|...+. +. .+..+.++||||+......+.+.
T Consensus 108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG-~Tr~~~~--i~--~~~~~~l~DTPGi~~p~~~~~~~ 177 (273)
T d1puja_ 108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPG-ITTSQQW--VK--VGKELELLDTPGILWPKFEDELV 177 (273)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC--EE--ETTTEEEEECCCCCCSCCCCHHH
T ss_pred CCCCceEEEEEecCccchhhhhhhhhccceEEECCccc-ccccceE--EE--CCCCeEEecCCCccccCCccHHH
Confidence 34556899999999999999999999988744444333 2322221 11 35568899999998766555543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.81 E-value=2e-09 Score=84.78 Aligned_cols=63 Identities=27% Similarity=0.313 Sum_probs=38.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccccc-----CCCCCce-eeEeEEEEeeCCcEEEEEeCCCCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA-----GSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~-----~~~~~t~-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (363)
+.+.+++|.+|+|||||||+|.+......+. ..|..|+ ....+. . .+ ...++||||+......
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~--l-~~-gg~iiDTPG~r~~~l~ 163 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK--F-DF-GGYVVDTPGFANLEIN 163 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEE--C-TT-SCEEESSCSSTTCCCC
T ss_pred CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEE--E-CC-CcEEEeCCcccccccc
Confidence 4688999999999999999999875432221 1223333 222222 2 22 2359999999876543
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.77 E-value=2.7e-09 Score=88.54 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=53.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeCC----------------cEEEEEeCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDG----------------QVVNVIDTPGLFD 81 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~ 81 (363)
..+|||||.++||||||+|+|++... . ....+ +|.+..+..+.+.+. -.+.++|.||+..
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~-~--~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ 78 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGI-E--AANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC---------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCC-c--cccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCC
Confidence 47999999999999999999997654 1 11222 233333333333111 2467999999865
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
......-++.++.+.+ .++|++++|+++.
T Consensus 79 ga~~g~Glg~~FL~~i----r~~d~LihVVr~f 107 (278)
T d1jala1 79 GASKGEGLGNKFLANI----RETDAIGHVVRCF 107 (278)
T ss_dssp THHHHGGGTCCHHHHH----HTCSEEEEEEECS
T ss_pred CcccCCCccHHHHHHH----HhccceEEEeecc
Confidence 2111112333444444 3679999999863
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.75 E-value=5.5e-09 Score=88.65 Aligned_cols=87 Identities=16% Similarity=0.085 Sum_probs=43.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCce-eeEeEEEE--e---------------------eCCcEEEEEeC
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTV--L---------------------KDGQVVNVIDT 76 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~-~~~~~~~~--~---------------------~~~~~~~l~Dt 76 (363)
+|||||.++||||||+|+|+|.... ....+.|| +..+.... . .....+.++|+
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~~---v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~ 78 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDVE---IANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred cEeEECCCCCCHHHHHHHHHCCCCc---hhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEEC
Confidence 7999999999999999999987641 22222222 21111000 0 01235789999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
||+...... ++.+...+......+|++++|+++.
T Consensus 79 pGli~ga~~----g~~~~~~~l~~i~~~d~ii~VVd~~ 112 (319)
T d1wxqa1 79 AGLVPGAHE----GRGLGNKFLDDLRMASALIHVVDAT 112 (319)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETT
T ss_pred CCcccchhc----ccchHHHHHHhhccceEEEEEeccc
Confidence 998653211 2334444555567899999999975
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.75 E-value=1.5e-09 Score=85.73 Aligned_cols=63 Identities=29% Similarity=0.344 Sum_probs=35.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccccccccc-----CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA-----GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (363)
.+.+.+++|.+|+|||||||+|.|......+. ..|..|+.... .+.. ++ -.++||||+.....
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~-l~~~-~g--g~iiDTPG~r~~~l 163 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE-LIHT-SG--GLVADTPGFSSLEF 163 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC-EEEE-TT--EEEESSCSCSSCCC
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEE-EEec-CC--CEEEECCccccccc
Confidence 34678899999999999999999875433221 12323332221 1223 33 34899999977543
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.74 E-value=5.5e-08 Score=81.66 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=57.6
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHH-HHHHHhccccccceEEEEeCC
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFGKNVFDYMIVVFTGG 147 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~i~v~n~~ 147 (363)
..+.||.|.|.+... .. ....+|.+++|.... .+.+...++ -+.+. .-++|+||+
T Consensus 144 ~d~iiiETVG~gq~e---------~~-----~~~~~D~~v~v~~p~---~GD~iQ~~k~gilE~-------aDi~vvNKa 199 (323)
T d2qm8a1 144 FDVILVETVGVGQSE---------TA-----VADLTDFFLVLMLPG---AGDELQGIKKGIFEL-------ADMIAVNKA 199 (323)
T ss_dssp CCEEEEEECSSSSCH---------HH-----HHTTSSEEEEEECSC---C------CCTTHHHH-------CSEEEEECC
T ss_pred CCeEEEeehhhhhhh---------hh-----hhcccceEEEEeecc---chhhhhhhhhhHhhh-------hheeeEecc
Confidence 345677777766521 11 112468888888765 223322221 11222 568889999
Q ss_pred CCCCcchhhHHHHhccCCCchHHHHHHhcCCc-eEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 148 DDLEDHEKTLEDFLGHECPKPLKEILQLCDNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 148 D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
|.... ..+...+.. .+...+...... ......+..+|+.++.++++|++.|......
T Consensus 200 D~~~~--~~~~~~~~~----~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~ 257 (323)
T d2qm8a1 200 DDGDG--ERRASAAAS----EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK 257 (323)
T ss_dssp STTCC--HHHHHHHHH----HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred ccccc--hHHHHHHHH----HHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence 97755 322222211 022222221111 0111234567888999999999998877643
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=8.9e-09 Score=81.65 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|-..
T Consensus 25 ~Gei~~liGpsGsGKSTLl~~i~Gl~~ 51 (232)
T d2awna2 25 EGEFVVFVGPSGCGKSTLLRMIAGLET 51 (232)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 456999999999999999999998765
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=98.63 E-value=5e-08 Score=78.27 Aligned_cols=133 Identities=9% Similarity=0.027 Sum_probs=70.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-------------eEEEEeeCC--cEEEEEeCCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-------------MKTTVLKDG--QVVNVIDTPGLFDL 82 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-------------~~~~~~~~~--~~~~l~DtpG~~~~ 82 (363)
++.+|+|+|+||||||||+++|+|-.. ++.|.+..... +.++.+ +. ..-++.+...+...
T Consensus 27 ~Ge~vaivG~sGsGKSTLl~ll~gl~~----p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q-~~~lf~~ti~eNi~~~~~ 101 (242)
T d1mv5a_ 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ----PTAGEITIDGQPIDNISLENWRSQIGFVSQ-DSAIMAGTIRENLTYGLE 101 (242)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC----CSBSCEEETTEESTTTSCSCCTTTCCEECC-SSCCCCEEHHHHTTSCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhC----CCCCEEEECCEEeccccHHHHHhheEEEcc-ccccCCcchhhheecccc
Confidence 457999999999999999999998775 44444443221 111111 10 01122232222211
Q ss_pred -CCChHHHHHHHHHHHhc-----cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcc
Q 017924 83 -SAGSEFVGKEIVKCLGM-----AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDH 153 (363)
Q Consensus 83 -~~~~~~~~~~~~~~~~~-----~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~ 153 (363)
......+.......... ...+.+..+ .+....+++++++++...+.++... +++++ ++.+|....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~g~~LSGGqkQRv~iARal~~~p---~ililDEpts~LD~~~~- 175 (242)
T d1mv5a_ 102 GDYTDEDLWQVLDLAFARSFVENMPDQLNTEV--GERGVKISGGQRQRLAIARAFLRNP---KILMLDEATASLDSESE- 175 (242)
T ss_dssp SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEE--STTSBCCCHHHHHHHHHHHHHHHCC---SEEEEECCSCSSCSSSC-
T ss_pred cccchhhHHHHHHHHHhhhhhccCcccccccc--cCCCCCCCHHHHHHHHHHHHHhcCC---CEEEecCCccccCHHHH-
Confidence 12233322222221111 111222221 2222479999999999999887653 45555 678887765
Q ss_pred hhhHHHHhc
Q 017924 154 EKTLEDFLG 162 (363)
Q Consensus 154 ~~~l~~~~~ 162 (363)
..+.+.+.
T Consensus 176 -~~i~~~l~ 183 (242)
T d1mv5a_ 176 -SMVQKALD 183 (242)
T ss_dssp -CHHHHHHH
T ss_pred -HHHHHHHH
Confidence 44444443
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.58 E-value=1.9e-08 Score=79.99 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|-..
T Consensus 31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~~ 57 (239)
T d1v43a3 31 DGEFLVLLGPSGCGKTTTLRMIAGLEE 57 (239)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 456999999999999999999998765
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.56 E-value=1e-08 Score=80.09 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=27.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t 55 (363)
++..++|+|+||||||||+++|+|... +..|.+.
T Consensus 26 ~Gei~~l~G~NGsGKSTLl~~i~gl~~----p~~G~I~ 59 (200)
T d1sgwa_ 26 KGNVVNFHGPNGIGKTTLLKTISTYLK----PLKGEII 59 (200)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC----CSEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHhcccc----cCCCEEE
Confidence 456899999999999999999999876 5444443
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=98.56 E-value=2e-08 Score=79.97 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=29.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT 57 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~ 57 (363)
++..++|+|+||||||||+++|+|-.. ++.|.+...
T Consensus 28 ~Ge~~~liG~sGaGKSTll~~i~gl~~----p~sG~I~~~ 63 (240)
T d1g2912 28 DGEFMILLGPSGCGKTTTLRMIAGLEE----PSRGQIYIG 63 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC----CSEEEEEET
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC----CCCCEEEEC
Confidence 456999999999999999999999876 555555443
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.55 E-value=1.6e-08 Score=83.17 Aligned_cols=121 Identities=12% Similarity=0.031 Sum_probs=66.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
++..|+|+|+||||||||+++|+|... ++.|.+.....+.++.+ ... ..++.+..-+.. ........ .+.+
T Consensus 61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~~----p~~G~I~~~g~i~~v~Q-~~~l~~~tv~eni~~~~-~~~~~~~~-~~~~ 133 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTSLLMLILGELE----ASEGIIKHSGRVSFCSQ-FSWIMPGTIKENIIFGV-SYDEYRYK-SVVK 133 (281)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSC----CSEEEEECCSCEEEECS-SCCCCSEEHHHHHTTTS-CCCHHHHH-HHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCc----CCCcEEEECCEEEEEec-cccccCceeeccccccc-cccchHHH-HHHH
Confidence 457999999999999999999999876 55565555554444322 110 112222221111 11122211 2211
Q ss_pred HH------hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCC
Q 017924 96 CL------GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDL 150 (363)
Q Consensus 96 ~~------~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~ 150 (363)
.. .....+.+.+ +......++++++.++...+.++... .++++ ++.+|..
T Consensus 134 ~~~~~~~i~~l~~~~~~~--~~~~~~~LSgGqkQRv~lARaL~~~p---~illLDEPts~LD~~ 192 (281)
T d1r0wa_ 134 ACQLQQDITKFAEQDNTV--LGEGGVTLSGGQRARISLARAVYKDA---DLYLLDSPFGYLDVF 192 (281)
T ss_dssp HTTCHHHHTTSTTGGGCE--ECTTCTTSCHHHHHHHHHHHHHHSCC---SEEEEESCCCSSCHH
T ss_pred HHHhHHHHHhchhhhhhh--hhhhccCCCHHHHHHHHHHHHHHhCc---cchhhcCccccCCHH
Confidence 11 1111122322 12222479999999999999988763 45555 6777754
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=1.6e-08 Score=80.97 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+|+|||++|||||||+++|+|...
T Consensus 28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~~ 54 (241)
T d2pmka1 28 QGEVIGIVGRSGSGKSTLTKLIQRFYI 54 (241)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456999999999999999999998765
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=98.49 E-value=6.1e-09 Score=82.33 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|-.. ++.|.+..
T Consensus 25 ~Ge~~~liGpsGaGKSTll~~l~Gl~~----p~sG~I~~ 59 (229)
T d3d31a2 25 SGEYFVILGPTGAGKTLFLELIAGFHV----PDSGRILL 59 (229)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSC----CSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC----CCCCEEEE
Confidence 457999999999999999999999876 44444433
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.48 E-value=1.4e-07 Score=74.93 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|.|-.. ++.|.+..
T Consensus 30 ~Ge~~~iiG~sGsGKSTll~~i~gl~~----p~~G~I~~ 64 (242)
T d1oxxk2 30 NGERFGILGPSGAGKTTFMRIIAGLDV----PSTGELYF 64 (242)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSC----CSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCcC----CCCceEEE
Confidence 457999999999999999999999776 55554444
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.47 E-value=1.9e-08 Score=79.94 Aligned_cols=25 Identities=44% Similarity=0.440 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..++|+|+||||||||+++|+|-..
T Consensus 25 e~~~liGpnGaGKSTll~~i~Gl~~ 49 (240)
T d2onka1 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCChHHHHHHHHHcCCC
Confidence 4888999999999999999998775
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.47 E-value=2.1e-07 Score=72.76 Aligned_cols=75 Identities=21% Similarity=0.217 Sum_probs=41.6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccC----CCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK----DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v 143 (363)
+..+.||||+|... .+.....++........ ..++-+++|+++. ....+...+......++ ..-++
T Consensus 93 ~~d~ilIDTaGr~~---~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~--~~~~~~~~~~~~~~~~~-----~~~lI 162 (213)
T d1vmaa2 93 NKDVVIIDTAGRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT--TGQNGLVQAKIFKEAVN-----VTGII 162 (213)
T ss_dssp TCSEEEEEECCCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG--GHHHHHHHHHHHHHHSC-----CCEEE
T ss_pred CCCEEEEecccccc---chHHHHHHHHHHHhhhhhccccccceeEEeeccc--cCcchhhhhhhhccccC-----CceEE
Confidence 44578999999765 34444555555443222 2357788888875 11222222222222222 35578
Q ss_pred EeCCCCCCc
Q 017924 144 FTGGDDLED 152 (363)
Q Consensus 144 ~n~~D~~~~ 152 (363)
+||+|....
T Consensus 163 ~TKlDe~~~ 171 (213)
T d1vmaa2 163 LTKLDGTAK 171 (213)
T ss_dssp EECGGGCSC
T ss_pred EecccCCCc
Confidence 899998654
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=3.2e-07 Score=72.96 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=28.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
.+..++|+|+||||||||+++|.|-.. ++.|.+..
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~~----p~sG~I~~ 64 (240)
T d3dhwc1 30 AGQIYGVIGASGAGKSTLIRCVNLLER----PTEGSVLV 64 (240)
T ss_dssp SSCEEEEEESTTSSHHHHHHHHTTSSC----CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCcc----ccCCceEE
Confidence 457999999999999999999999876 44444443
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.36 E-value=4.8e-07 Score=70.45 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=43.3
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCC
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~ 147 (363)
+..+.+|||+|.... +.....++....... ..+-+++|.++. .............+.++ .--+++||+
T Consensus 92 ~~d~vlIDTaGr~~~---d~~~~~el~~~~~~~--~~~~~llv~~a~--~~~~~~~~~~~f~~~~~-----~~~~I~TKl 159 (207)
T d1ls1a2 92 ARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAM--TGQEALSVARAFDEKVG-----VTGLVLTKL 159 (207)
T ss_dssp TCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGG--GTHHHHHHHHHHHHHTC-----CCEEEEECG
T ss_pred cCcceeecccccchh---hhhhHHHHHHHHhhc--CCceEEEEeccc--cchhHHHHHHHHHhhCC-----CCeeEEeec
Confidence 345779999997663 344455665554333 457788888875 22334444444333333 234778999
Q ss_pred CCCCc
Q 017924 148 DDLED 152 (363)
Q Consensus 148 D~~~~ 152 (363)
|....
T Consensus 160 De~~~ 164 (207)
T d1ls1a2 160 DGDAR 164 (207)
T ss_dssp GGCSS
T ss_pred Ccccc
Confidence 97654
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.34 E-value=2.5e-06 Score=66.26 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=41.6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc---C-CCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA---K-DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v 143 (363)
+..+.||||+|... .+....+++....... . ...+-+++|+++. ....+..........++ .--++
T Consensus 91 ~~d~ilIDTaGr~~---~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~--~~~~~~~~~~~~~~~~~-----~~~lI 160 (211)
T d2qy9a2 91 NIDVLIADTAGRLQ---NKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS--TGQNAVSQAKLFHEAVG-----LTGIT 160 (211)
T ss_dssp TCSEEEECCCCCGG---GHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGG--GTHHHHHHHHHHHHHSC-----CCEEE
T ss_pred CCCEEEeccCCCcc---ccHHHHHHHHHHHHHHhhhcccCcceeeeehhcc--cCcchHHHHhhhhhccC-----CceEE
Confidence 34567999999754 2344445555443322 1 1356788888875 22333332222222223 34577
Q ss_pred EeCCCCCCc
Q 017924 144 FTGGDDLED 152 (363)
Q Consensus 144 ~n~~D~~~~ 152 (363)
+||+|....
T Consensus 161 lTKlDe~~~ 169 (211)
T d2qy9a2 161 LTKLDGTAK 169 (211)
T ss_dssp EECCTTCTT
T ss_pred EeecCCCCC
Confidence 899998755
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.3e-06 Score=71.40 Aligned_cols=107 Identities=21% Similarity=0.209 Sum_probs=61.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc-ccccccCCCCCceeeEeEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..|+|+|+.++|||||+|.|+|.. .|..+.+...+|....+...... .+..+.++||.|+.+....+......+...
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~~~~~~~~~~i~~l 112 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFAL 112 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccccccchhHHHHHHH
Confidence 589999999999999999999865 34444444455554444333221 355788999999987543221111222221
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL 131 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~ 131 (363)
.... .+++||-... .....+...+..+..+
T Consensus 113 ~~ll---Ss~~i~N~~~--~~~~~~l~~L~~~~~~ 142 (277)
T d1f5na2 113 AVLL---SSTFVYNSIG--TINQQAMDQLYYVTEL 142 (277)
T ss_dssp HHHH---CSEEEEEEES--CSSHHHHHTTHHHHTH
T ss_pred HHHH---hCEEEEeccc--cCcHHHHHHHHHHHHH
Confidence 1111 2445554332 4556665555555443
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.32 E-value=6.2e-07 Score=69.72 Aligned_cols=75 Identities=17% Similarity=0.180 Sum_probs=41.1
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHH---hcc-CCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL---GMA-KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v 143 (363)
+..+.||||+|.... +....+++.... ... ....+-+++|++++.. .++...+......++ .--++
T Consensus 88 ~~d~ilIDTaGr~~~---d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~-----~~~lI 157 (207)
T d1okkd2 88 GYDLLFVDTAGRLHT---KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG--QNGLEQAKKFHEAVG-----LTGVI 157 (207)
T ss_dssp TCSEEEECCCCCCTT---CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--THHHHHHHHHHHHHC-----CSEEE
T ss_pred CCCEEEcCccccchh---hHHHHHHHHHHHHHhhhcccCCCceEEEEeecccC--chHHHHHHHhhhccC-----CceEE
Confidence 345789999997653 333333333332 211 1345778888887622 233333333333333 34577
Q ss_pred EeCCCCCCc
Q 017924 144 FTGGDDLED 152 (363)
Q Consensus 144 ~n~~D~~~~ 152 (363)
+||+|....
T Consensus 158 ~TKlDet~~ 166 (207)
T d1okkd2 158 VTKLDGTAK 166 (207)
T ss_dssp EECTTSSCC
T ss_pred EeccCCCCC
Confidence 899998755
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.32 E-value=6.6e-07 Score=68.52 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=22.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcccc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
+|+|+|+||+|||||++.|+|...
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~ 25 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCcHHHHHHHHHHhcCC
Confidence 799999999999999999998654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.28 E-value=1.1e-06 Score=68.37 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=40.4
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCC
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~ 147 (363)
+..+.||||+|....+ .......++....... ..+-+++|++++.. ......+......++ .--+++||.
T Consensus 94 ~~d~IlIDTaGr~~~~-~~~~~~~el~~~~~~~--~~~~~~LVl~a~~~--~~~~~~~~~~~~~~~-----~~~lI~TKl 163 (211)
T d1j8yf2 94 KMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAI--KPDEVTLVIDASIG--QKAYDLASKFNQASK-----IGTIIITKM 163 (211)
T ss_dssp TCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGHHHHHHHHHHHCT-----TEEEEEECT
T ss_pred CCceEEEecCCcCccc-hhhHHHHHHHHHHhhc--CCceEEEEEecccC--cchHHHHhhhhcccC-----cceEEEecc
Confidence 4467899999975422 1222234444444332 35678888887522 222222222222222 234678999
Q ss_pred CCCCc
Q 017924 148 DDLED 152 (363)
Q Consensus 148 D~~~~ 152 (363)
|....
T Consensus 164 Det~~ 168 (211)
T d1j8yf2 164 DGTAK 168 (211)
T ss_dssp TSCSC
T ss_pred cCCCc
Confidence 98765
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=98.24 E-value=1.9e-07 Score=74.55 Aligned_cols=35 Identities=29% Similarity=0.210 Sum_probs=28.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+|+|+|... ++.|.+..
T Consensus 27 ~Gei~glvG~nGaGKSTLl~~l~G~~~----p~~G~i~i 61 (238)
T d1vpla_ 27 EGEIFGLIGPNGAGKTTTLRIISTLIK----PSSGIVTV 61 (238)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC----CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCCEEEE
Confidence 456999999999999999999999876 55454443
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.21 E-value=2.4e-07 Score=73.24 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|-..
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~~ 56 (230)
T d1l2ta_ 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (230)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCcchhhHhccCCCC
Confidence 457999999999999999999999876
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=98.21 E-value=2.3e-07 Score=74.27 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 31 ~Gei~~liGpnGaGKSTl~~~i~Gl~~ 57 (240)
T d1ji0a_ 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456999999999999999999999876
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=3.4e-07 Score=73.76 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++..++|||+||||||||+++|+|...
T Consensus 38 ~~Ge~vaivG~sGsGKSTLl~li~gl~~ 65 (251)
T d1jj7a_ 38 RPGEVTALVGPNGSGKSTVAALLQNLYQ 65 (251)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence 3457999999999999999999998876
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=98.14 E-value=0.0001 Score=62.80 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
-+++|||++|+|||+++..|+...
T Consensus 44 ~n~llvG~~GvGKtaiv~~la~~i 67 (387)
T d1qvra2 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (387)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999887443
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.13 E-value=4.1e-07 Score=73.52 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++-.++|+|+||||||||+++|+|...
T Consensus 29 ~Gei~~liG~nGaGKSTLl~~i~Gl~~ 55 (254)
T d1g6ha_ 29 KGDVTLIIGPNGSGKSTLINVITGFLK 55 (254)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCc
Confidence 456899999999999999999999876
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.11 E-value=4.7e-07 Score=72.98 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+|+|||++|||||||+++|+|-..
T Consensus 40 ~Ge~iaivG~sGsGKSTLl~ll~gl~~ 66 (253)
T d3b60a1 40 AGKTVALVGRSGSGKSTIASLITRFYD 66 (253)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcccC
Confidence 456999999999999999999998765
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=98.06 E-value=7.5e-07 Score=71.89 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+..++|+|+||||||||+++|+|-..
T Consensus 27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~~ 53 (258)
T d1b0ua_ 27 AGDVISIIGSSGSGKSTFLRCINFLEK 53 (258)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCcc
Confidence 457999999999999999999998765
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.01 E-value=7.2e-07 Score=71.80 Aligned_cols=27 Identities=33% Similarity=0.314 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+|+|+|++|||||||+++|+|...
T Consensus 43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 69 (255)
T d2hyda1 43 KGETVAFVGMSGGGKSTLINLIPRFYD 69 (255)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence 456999999999999999999998765
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=1.1e-06 Score=69.89 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
++-.++|+|+||||||||+++|+|..
T Consensus 24 ~Gei~~iiG~nGaGKSTLl~~l~Gl~ 49 (231)
T d1l7vc_ 24 AGEILHLVGPNGAGKSTLLARMAGMT 49 (231)
T ss_dssp TTCEEECBCCTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45799999999999999999999853
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=0.00037 Score=55.91 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+-+++|||++|+|||+++..|+...
T Consensus 39 k~n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 39 KNNPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCcEEECCCCCcHHHHHHHHHHHH
Confidence 3589999999999999999998544
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.46 E-value=2.5e-05 Score=59.74 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+|+|+|.+|+|||||++.|+..
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999854
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=3.3e-05 Score=58.02 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|.+|||||||++.|+..
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999999854
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.40 E-value=6.6e-06 Score=64.63 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+++|.+|+|||||.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999843
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.30 E-value=0.00015 Score=60.35 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+|+|+|.+|+|||||+|+|++...
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEeeccccchHHHHHHhhhcc
Confidence 4699999999999999999996543
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.23 E-value=8.1e-05 Score=56.04 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+.+|+|+|++||||||+.+.|+..
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH
Confidence 469999999999999999999743
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.19 E-value=0.0001 Score=54.14 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|.+|||||||++.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998863
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.18 E-value=7.9e-05 Score=55.98 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+|+|+|++||||||+.+.|+..
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999743
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=9.8e-05 Score=54.93 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|++||||||+.+.|+..
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999744
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.00019 Score=57.11 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.++|.|++|+||||+++.++..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~ 57 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKG 57 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999998744
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.14 E-value=0.00011 Score=55.90 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+..|+|+|++|||||||++.|...
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 357889999999999999999754
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.00015 Score=54.29 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+...|+|+|.+||||||+.+.|+..
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567888999999999999999754
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.12 E-value=0.00012 Score=54.68 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhccc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.|+|+|.+|||||||++.|+...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L 25 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAA 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 67899999999999999887543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.00027 Score=54.87 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.-+++.|+.|+||||++..++..
T Consensus 25 h~lLl~Gp~G~GKtt~a~~~a~~ 47 (207)
T d1a5ta2 25 HALLIQALPGMGDDALIYALSRY 47 (207)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHh
Confidence 45899999999999999988743
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.06 E-value=0.00016 Score=55.43 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+.+|+|+|++||||||+.+.|+..
T Consensus 3 ~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999843
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.04 E-value=0.00016 Score=54.37 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+..|+|+|++||||||+.+.|....
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999997543
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.04 E-value=0.00017 Score=54.42 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..+..|.|+|.+||||||+.+.|+..
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999744
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.03 E-value=0.00017 Score=54.91 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|.|.+||||||+++.|...
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999743
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.00027 Score=53.60 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=44.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+-+++|||++|+|||+++..|+.... ....+... .+..++-+|...+........+..+.+...+.
T Consensus 43 k~n~lLvG~pGVGKTalv~~LA~ri~----~~~vp~~L----------~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~ 108 (195)
T d1jbka_ 43 KNNPVLIGEPGVGKTAIVEGLAQRII----NGEVPEGL----------KGRRVLALDMGALVAGAKYRGEFEERLKGVLN 108 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHH----HTCSCGGG----------TTCEEEEECHHHHHTTTCSHHHHHHHHHHHHH
T ss_pred CCCeEEEecCCcccHHHHHHHHHHHH----hCCCCHHH----------cCceEEEeeHHHHhccCCccHHHHHHHHHHHH
Confidence 35899999999999999999985443 11111010 23444455654432211112233344444443
Q ss_pred cc-CCCccEEEEEeecC
Q 017924 99 MA-KDGIHAFLVVFSVT 114 (363)
Q Consensus 99 ~~-~~~~~~~l~v~~~~ 114 (363)
.. ....++|+|+.++.
T Consensus 109 e~~~~~~~iILfIDeih 125 (195)
T d1jbka_ 109 DLAKQEGNVILFIDELH 125 (195)
T ss_dssp HHHHSTTTEEEEEETGG
T ss_pred HHhcCCCcEEEEcchHH
Confidence 22 22346788887765
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.02 E-value=0.00019 Score=55.16 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
....|+|.|..|||||||.+.|..
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999973
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.00 E-value=0.00028 Score=52.94 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g 41 (363)
...|+++|.+|||||||.+.++.
T Consensus 14 p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 14 PEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CCEEEEECCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35888999999999999998863
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.97 E-value=0.00026 Score=54.39 Aligned_cols=26 Identities=19% Similarity=0.426 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
....+|+|+|++||||||+.+.|+..
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999754
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.97 E-value=0.00019 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|++||||||+.+.|+..
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999844
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.00018 Score=54.61 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..|.|.|++|+|||||++.|+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999987543
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.94 E-value=0.0002 Score=54.23 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+|+|+|++||||||+.+.|+..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999743
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.00025 Score=54.89 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+.-|+|+|++|||||||++.|+..
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 467889999999999999999754
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.90 E-value=0.00028 Score=54.13 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|++||||||+.+.|+..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58899999999999999999743
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.89 E-value=0.00022 Score=54.33 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
-|+|+|++||||+||++.|+..
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 3889999999999999999754
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.88 E-value=0.00023 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHhhccc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+|+|+|.+||||||+.+.|+...
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997443
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.88 E-value=0.00028 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|.|.+||||||+.+.|...
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57888899999999999999754
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=5.1e-05 Score=59.09 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
...+|+|+||||||||+++|.
T Consensus 25 ~~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 25 LVTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHHHSCCSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 466789999999999999985
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.88 E-value=0.00033 Score=53.47 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
....+|+|+|++||||||+.+.|+..
T Consensus 4 ~r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 4 ARLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999999843
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.86 E-value=0.00022 Score=53.13 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+|+|+|..||||||+.+.|+..
T Consensus 2 p~IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 37889999999999999999744
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.0026 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|++.|++|+|||+++++|+..
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHH
Confidence 56899999999999999999844
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.83 E-value=0.00028 Score=53.49 Aligned_cols=22 Identities=32% Similarity=0.691 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+|+|+|++||||||+.+.|+..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999844
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.83 E-value=0.00033 Score=52.99 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+|+|+|++||||||+.+.|+..
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999743
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.0054 Score=48.03 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
..++|.|+|.+||||+++++.
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEeccCchhhHHHHHHHH
Confidence 568899999999999999975
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.00037 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.-|+|+|++|+|||||++.|+..
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999854
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.81 E-value=0.00027 Score=53.99 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+|+|+|++||||||+.+.|+..
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999744
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.81 E-value=0.00026 Score=58.65 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.0
Q ss_pred cEEEEEcCCCCchHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSI 39 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l 39 (363)
...+|||+|||||||+|++|
T Consensus 25 ~lnvlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 25 RVTAIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp SEEEEECCTTTCSTHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 36689999999999999998
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.76 E-value=0.00033 Score=53.52 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=18.9
Q ss_pred EEEEcCCCCchHHHHHHhhcc
Q 017924 22 VVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~ 42 (363)
|+|+|++|||||||++.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998744
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.00022 Score=54.61 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+..|.|+|.+||||||+.+.|.-.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999744
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.72 E-value=0.0004 Score=52.55 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+|+|+|++||||||+.+.|+..
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999744
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.72 E-value=0.0034 Score=49.91 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.++|.|++|+||||++.+++..
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999998744
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.00039 Score=52.49 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+|+|+|++||||||..+.|+..
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999743
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.63 E-value=0.00044 Score=51.73 Aligned_cols=23 Identities=17% Similarity=0.484 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|.+||||||+.+.|+..
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999743
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.61 E-value=0.00061 Score=55.14 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..|+|+|++|+|||||.++|++..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998654
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.59 E-value=0.0032 Score=45.71 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++..|++.|.-|||||||++.|+...
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 456789999999999999999997443
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.59 E-value=0.00057 Score=52.35 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|.|+|++||||||+.+.|+..
T Consensus 9 ~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 9 KIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999744
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.56 E-value=0.00062 Score=52.95 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|||.|..|||||||.+.|..
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999863
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.00061 Score=52.12 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+|+|+|++||||||..+.|+..
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999743
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.51 E-value=0.00063 Score=58.96 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
...+|+|+||+||||++.+|.
T Consensus 26 ~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 26 NFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 456799999999999999983
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.44 E-value=0.00099 Score=50.99 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|-|..||||||+++.|...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999743
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.40 E-value=0.011 Score=45.80 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
..++|.|+|.+||||+++++.
T Consensus 36 ~~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 36 ELVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp CEEEEESCSSSSHHHHHHHHH
T ss_pred cEEEEECCCccccchhhhhhH
Confidence 368899999999999999875
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.39 E-value=0.00079 Score=51.16 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.|+|.|.+||||||+++.|...
T Consensus 3 iivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4667899999999999999744
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.30 E-value=0.0012 Score=50.97 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..+..|.|.|.+|||||||.+.|...
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999743
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.12 E-value=0.00097 Score=53.83 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=18.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhh
Q 017924 17 NGERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
.+...|+|.|.+|||||||.++|.
T Consensus 2 ~k~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 2 KKHPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp TTSCEEEEESCC---CCTHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHH
Confidence 345689999999999999999875
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.11 E-value=0.0015 Score=49.72 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
..|||.|..||||||+.+.|.
T Consensus 4 ~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999885
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.10 E-value=0.0011 Score=52.52 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..+++.|++|+|||||+++|++..
T Consensus 36 ~~~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998653
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.92 E-value=0.0022 Score=50.01 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+|+|-|++||||||..+.|+...
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 688999999999999999997543
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.002 Score=52.68 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhh
Q 017924 17 NGERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
.....|||.|..|||||||.+.|.
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHH
Confidence 344799999999999999999886
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.90 E-value=0.0081 Score=46.77 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+.|.|++|+||||++.+|+..
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHH
Confidence 4889999999999999999854
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.85 E-value=0.0016 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|.|++|+|||+|+++|++.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhc
Confidence 46999999999999999999854
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.84 E-value=0.0035 Score=49.88 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
...++|.|++|+||||++++|+...
T Consensus 52 ~~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 52 FRAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998654
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.79 E-value=0.0021 Score=53.04 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
...|+++|++|+|||.|.++|+..
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhc
Confidence 467899999999999999999854
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.75 E-value=0.0023 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHhhccc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+++.|++|+||||+.++|+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHhcc
Confidence 58999999999999999998554
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.74 E-value=0.0026 Score=48.93 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.|+|-|.-||||||+++.|...
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.72 E-value=0.0025 Score=50.07 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..++|.|++|+||||++++|+...
T Consensus 46 ~~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 358999999999999999998543
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=0.0029 Score=49.23 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..|+|.|++||||||+.+.|+.+..
T Consensus 4 piI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3899999999999999999975543
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.003 Score=48.71 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
..|||.|..||||||+.+.|.
T Consensus 4 ~iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEECCCcCCHHHHHHHHH
Confidence 479999999999999999885
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.64 E-value=0.0033 Score=48.33 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
..|||.|..||||||+.+.|.
T Consensus 3 ~iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999885
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.61 E-value=0.0033 Score=48.55 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+.-|+|-|..||||||+++.|...
T Consensus 2 gkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999998743
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.59 E-value=0.0035 Score=48.31 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+.-|+|-|..||||||+++.|...
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567888899999999999998743
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.0025 Score=50.31 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|-|.-||||||+++.|...
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999754
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.56 E-value=0.0042 Score=49.86 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
...++|.|++|+||||+++.|+...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998543
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.54 E-value=0.039 Score=41.71 Aligned_cols=89 Identities=13% Similarity=0.116 Sum_probs=49.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
...+++.|++|+||+|+...|+.... ..... ...+..++.-|- ...-+++. .+..++.
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~~i~----~~~~~--------------h~D~~~i~~~~~---~I~Id~IR-~i~~~~~ 72 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPEYVE----KFPPK--------------ASDVLEIDPEGE---NIGIDDIR-TIKDFLN 72 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHH----TSCCC--------------TTTEEEECCSSS---CBCHHHHH-HHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHh----ccccC--------------CCCEEEEeCCcC---CCCHHHHH-HHHHHHh
Confidence 46899999999999999999884321 11000 001123332221 11233333 4555544
Q ss_pred cc-CCCccEEEEEeecCCCCCHHHHHHHHHHHH
Q 017924 99 MA-KDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (363)
Q Consensus 99 ~~-~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (363)
.. ..+..-++++.+++ +++......|..+.+
T Consensus 73 ~~~~~~~~KviIId~ad-~l~~~aqNaLLK~LE 104 (198)
T d2gnoa2 73 YSPELYTRKYVIVHDCE-RMTQQAANAFLKALE 104 (198)
T ss_dssp SCCSSSSSEEEEETTGG-GBCHHHHHHTHHHHH
T ss_pred hCcccCCCEEEEEeCcc-ccchhhhhHHHHHHh
Confidence 33 33445667766776 888877765554444
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.45 E-value=0.0029 Score=50.20 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.-|++.|++|+|||+|+++|++.
T Consensus 43 ~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHH
Confidence 36999999999999999999854
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.44 E-value=0.0042 Score=53.10 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+.+-|+|.|++|+||||++.+++...
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~ 182 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQEL 182 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhh
Confidence 345889999999999999999998543
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.35 E-value=0.0042 Score=49.95 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|+.|+|||||++.++.
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHHH
Confidence 5788999999999999998863
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.21 E-value=0.0046 Score=48.57 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+.|.|++|+||||++++|+.+
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHHH
Confidence 4889999999999999999854
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.21 E-value=0.0041 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..|+|.|++|+|||+|+++|++..
T Consensus 42 ~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 42 KGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcchhHHHHHHHHh
Confidence 469999999999999999998654
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.19 E-value=0.0043 Score=49.56 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.-|+|.|++|+|||+|++++++..
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceeEEecCCCCCchHHHHHHHHHh
Confidence 469999999999999999998543
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.07 E-value=0.0065 Score=46.94 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
.+.-|+|-|.-||||||+++.|..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECCCCCcHHHHHHHHHH
Confidence 467899999999999999999873
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.06 E-value=0.0081 Score=48.31 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
...|||-|..|||||||.+.|.
T Consensus 27 P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 27 PLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEeECCCCCCHHHHHHHHH
Confidence 4689999999999999998775
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.84 E-value=0.0068 Score=47.18 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.++|.|++|+||||+++.|+..
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCchhhHHHHHHH
Confidence 5889999999999999998744
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=94.78 E-value=0.012 Score=47.23 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=36.1
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
...+|++++|+|+...++..+....+.+ .. ++.++|+||+|+... ...+.+...
T Consensus 13 i~~~DvIl~V~DaR~P~ss~~~~l~~~~----~~---Kp~IlVlNK~DLv~~--~~~~~w~~~ 66 (273)
T d1puja_ 13 LKLIDIVYELVDARIPMSSRNPMIEDIL----KN---KPRIMLLNKADKADA--AVTQQWKEH 66 (273)
T ss_dssp GGGCSEEEEEEETTSTTTTSCHHHHHHC----SS---SCEEEEEECGGGSCH--HHHHHHHHH
T ss_pred HHhCCEEEEEEECCCCCCCCCHHHHHHH----cC---CCeEEEEECccCCch--HHHHHHHHH
Confidence 3467999999998756665544333322 22 389999999999876 544444443
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.72 E-value=0.01 Score=47.90 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+...|+|+|..|.|||||.+.+...
T Consensus 42 ~~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 42 LDSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999988643
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.67 E-value=0.0049 Score=49.72 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=17.9
Q ss_pred EEEEcCCCCchHHHHHHhhcc
Q 017924 22 VVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~ 42 (363)
+.|+|++|+||||+++.++..
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 455699999999999999854
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.66 E-value=0.0073 Score=52.12 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+|++||++|+|||-|.++|++.
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~ 72 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999854
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.62 E-value=0.011 Score=43.63 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
+.-|+|.|++|+||||+.-.|.
T Consensus 14 g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHH
Confidence 4679999999999999997776
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.56 E-value=0.0076 Score=46.82 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..++|.|--|||||||+|.|+..
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred CEEEEeeCCCCCHHHHHHHHHhc
Confidence 46889999999999999998743
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.50 E-value=0.012 Score=43.55 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
+.-|+|.|++|+|||||.-.|.
T Consensus 15 g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 4678999999999999998776
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.47 E-value=0.01 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|=|.-||||||+++.|..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999999999974
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.44 E-value=0.013 Score=48.04 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.1
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhc
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
..+...++++|++|+|||.|.++|+.
T Consensus 49 ~~p~~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 49 HKPVGSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp TSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCcchhHHHHHHHHh
Confidence 34456899999999999999999973
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.24 E-value=0.034 Score=42.90 Aligned_cols=46 Identities=24% Similarity=0.192 Sum_probs=30.7
Q ss_pred CccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 103 GIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 103 ~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
++|.+++|+++. ..+...-..++-.+....+- +.+||+||+|+..+
T Consensus 10 NiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i----~pvIvlnK~DL~~~ 56 (231)
T d1t9ha2 10 NVDQAVLVFSAVQPSFSTALLDRFLVLVEANDI----QPIICITKMDLIED 56 (231)
T ss_dssp CCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTC----EEEEEEECGGGCCC
T ss_pred ccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCC----CEEEEEeccccccc
Confidence 678888888775 34655555544444333333 68889999999876
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.23 E-value=0.013 Score=46.12 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|||.|.-||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999964
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.22 E-value=0.012 Score=49.29 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..++++|++|+|||+|.++|++...
T Consensus 155 ~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 155 RYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999986543
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.13 E-value=0.015 Score=44.82 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+..+.|.|++|+|||+|+..|+..
T Consensus 23 G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 23 GSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHH
Confidence 358899999999999999877643
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.91 E-value=0.18 Score=38.52 Aligned_cols=46 Identities=13% Similarity=0.058 Sum_probs=30.7
Q ss_pred CccEEEEEeecCC-CCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 103 GIHAFLVVFSVTN-RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 103 ~~~~~l~v~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
++|.+++|+.+.. .++..-..++-.+....+- +.+||+||+|+...
T Consensus 10 NiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i----~pvIvlnK~DL~~~ 56 (225)
T d1u0la2 10 NVDQVILVVTVKMPETSTYIIDKFLVLAEKNEL----ETVMVINKMDLYDE 56 (225)
T ss_dssp SCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTC----EEEEEECCGGGCCH
T ss_pred cCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCC----CEEEEEeCcccCCH
Confidence 5788888888763 4665555443333333333 78888999999865
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.90 E-value=0.018 Score=42.29 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=19.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhh
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
.+.-|+|.|++|+||||+.-.|.
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHH
Confidence 34679999999999999997765
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=93.89 E-value=0.017 Score=48.31 Aligned_cols=24 Identities=25% Similarity=0.584 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
+...|+++|++|+|||-|.++|+.
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCcceeeeCCCCccHHHHHHHHHh
Confidence 346799999999999999999973
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=93.81 E-value=0.012 Score=48.11 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..++++|++|+|||.|.++|++..
T Consensus 124 g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 124 GMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEEEECSSSSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHHh
Confidence 456668999999999999998664
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.55 E-value=0.01 Score=49.32 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|++|+|||+|+++|.+
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHH
T ss_pred CeEEEECCCCccHHHHHHHHHH
Confidence 5799999999999999999864
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=93.52 E-value=0.017 Score=47.35 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
.+|.|=|.-|+||||+++.|..
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC
T ss_pred eEEEEECCcCCCHHHHHHHHHH
Confidence 5799999999999999999973
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=93.52 E-value=0.015 Score=47.79 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+|.|=|.-||||||+++.|...
T Consensus 6 lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 6 LRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEESSSSCTTHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999744
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.25 E-value=0.22 Score=39.31 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=18.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
+..+.|.|++|+|||||+=.++
T Consensus 60 g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 60 GRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SSEEEEECSSSSSHHHHHHHHH
T ss_pred ceeEEEecCCCcHHHHHHHHHH
Confidence 4588999999999999985554
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=93.17 E-value=0.02 Score=43.01 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..++++|+.++|||+|+++|+..
T Consensus 54 n~i~~~GP~~TGKS~f~~sl~~~ 76 (205)
T d1tuea_ 54 NCLVFCGPANTGKSYFGMSFIHF 76 (205)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred eEEEEECCCCccHHHHHHHHHHH
Confidence 58999999999999999998744
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=93.16 E-value=0.026 Score=46.48 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+|.|=|.-|+||||+++.|....
T Consensus 7 ~rI~iEG~iGsGKSTl~~~L~~~l 30 (333)
T d1p6xa_ 7 VRIYLDGVYGIGKSTTGRVMASAA 30 (333)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSGG
T ss_pred EEEEEECCccCCHHHHHHHHHHHh
Confidence 689999999999999999998543
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.12 E-value=0.025 Score=44.26 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
+..+.|.|++|+|||||+-.++
T Consensus 34 G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 34 GSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SSEEEEEESTTSSHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 3588999999999999997775
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.70 E-value=0.035 Score=45.39 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.1
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhh
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
+.+...++++|++|+|||.+.+.|+
T Consensus 50 ~kp~~~~lf~Gp~G~GKt~lak~la 74 (315)
T d1qvra3 50 NRPIGSFLFLGPTGVGKTELAKTLA 74 (315)
T ss_dssp SSCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred CCCceEEEEECCCcchHHHHHHHHH
Confidence 3444578899999999999999987
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.68 E-value=0.033 Score=43.56 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
+..++|.|++|+|||+|+-.++
T Consensus 26 gsl~li~G~pGsGKT~l~~qia 47 (242)
T d1tf7a2 26 DSIILATGATGTGKTLLVSRFV 47 (242)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 3588999999999999997775
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=92.39 E-value=0.039 Score=44.16 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
+-.++|.|.+|+|||||+..|+
T Consensus 35 G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 35 GEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 4588899999999999987765
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.24 E-value=0.039 Score=37.50 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhh
Q 017924 17 NGERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
..+..|.+-|-.|+|||||.++|.
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~ 27 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALL 27 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHH
T ss_pred ccceEEEEeCCCCCCHHHHHHHHH
Confidence 457899999999999999999996
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.09 E-value=0.043 Score=43.86 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..+-|++|+|..|+|||+|+..|+..
T Consensus 41 grGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 41 GRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp BTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred cCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 56779999999999999999888743
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.05 E-value=0.042 Score=43.14 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=18.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
+..+.|.|++|+|||||.-.++
T Consensus 36 G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 36 QAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 3588999999999999996654
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=91.99 E-value=0.049 Score=43.30 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
....+.++|+.++|||+|+++|..
T Consensus 103 k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 103 KRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHH
Confidence 346889999999999999999873
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.97 E-value=0.041 Score=42.17 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.7
Q ss_pred EEEEcCCCCchHHHHHHhhccc
Q 017924 22 VVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+.|.|+.|+|||-|+++++...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999998543
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.89 E-value=0.045 Score=42.81 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.1
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
+..+.|.|++|+|||+|+-.++
T Consensus 34 G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 34 QSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 4588999999999999997765
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.89 E-value=0.036 Score=47.61 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
..++|+|.+|+|||++++.|+
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHH
Confidence 469999999999999998765
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=91.74 E-value=0.047 Score=43.51 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=18.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
+..++|+|.+|+|||||+-.|+
T Consensus 29 g~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 29 GTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3578899999999999997665
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.72 E-value=0.049 Score=42.20 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=17.8
Q ss_pred ccEEEEEcCCCCchHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSI 39 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l 39 (363)
+..+.|.|++|+|||+|+-.+
T Consensus 26 G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 26 GRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHH
Confidence 458899999999999998544
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.38 E-value=0.06 Score=42.21 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g 41 (363)
+..+.|.|++|+|||+|.-.++.
T Consensus 37 G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 37 MAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999977763
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=90.52 E-value=0.069 Score=42.43 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=17.7
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
.+|+|.|+.|+||||+.=.|+
T Consensus 2 r~Iai~gKGGvGKTT~a~nLA 22 (269)
T d1cp2a_ 2 RQVAIYGKGGIGKSTTTQNLT 22 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHH
Confidence 479999999999999985553
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=90.15 E-value=0.62 Score=36.60 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+..+.|.|++|+|||||+-.++..
T Consensus 57 g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 57 GRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEecCCccchHHHHHHHHHH
Confidence 348889999999999999777643
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=88.75 E-value=0.15 Score=35.57 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=17.2
Q ss_pred CccEEEEEcCCCCchHHHHHHh
Q 017924 18 GERTVVLLGRTGNGKSATGNSI 39 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l 39 (363)
...+.+|++++|+|||+++-.+
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~ 28 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAA 28 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHH
Confidence 3457788999999999988443
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=88.11 E-value=0.16 Score=40.61 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=19.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhh
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
....|.+.|+.|+||||+.-.|+
T Consensus 7 ~p~~i~~sGKGGVGKTTvaa~lA 29 (296)
T d1ihua1 7 IPPYLFFTGKGGVGKTSISCATA 29 (296)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCcChHHHHHHHHH
Confidence 34688899999999999887765
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=88.09 E-value=0.16 Score=40.37 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=17.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
...|++.|+.|+||||+.=.|+
T Consensus 20 ~~iii~sGKGGVGKTT~a~nLA 41 (279)
T d1ihua2 20 HGLIMLMGKGGVGKTTMAAAIA 41 (279)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3466666999999999876654
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.88 E-value=0.2 Score=39.61 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhh
Q 017924 17 NGERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
..+-|++|+|..|+|||+|+-.++
T Consensus 66 gkGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 66 AKGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCEEEeeCCCCCCHHHHHHHHH
Confidence 346699999999999999987665
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=86.62 E-value=0.15 Score=41.00 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=15.8
Q ss_pred cEEEEEcCCCCchHHHH-HHh
Q 017924 20 RTVVLLGRTGNGKSATG-NSI 39 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli-~~l 39 (363)
..++|+|..|+||||.+ +.+
T Consensus 15 ~~~lI~g~aGTGKTt~l~~rv 35 (306)
T d1uaaa1 15 GPCLVLAGAGSGKTRVITNKI 35 (306)
T ss_dssp SEEEECCCTTSCHHHHHHHHH
T ss_pred CCEEEEeeCCccHHHHHHHHH
Confidence 45789999999999865 444
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=86.55 E-value=0.15 Score=41.47 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=14.6
Q ss_pred cEEEEEcCCCCchHHHH
Q 017924 20 RTVVLLGRTGNGKSATG 36 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli 36 (363)
..++|.|..|+||||.+
T Consensus 25 g~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 25 GPLLIMAGAGSGKTRVL 41 (318)
T ss_dssp SCEEEEECTTSCHHHHH
T ss_pred CCEEEEecCCccHHHHH
Confidence 45889999999999766
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=86.24 E-value=0.19 Score=40.16 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=16.7
Q ss_pred cEEEEEcCCCCchHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSI 39 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l 39 (363)
.+|+|.|+.|+||||+.-.|
T Consensus 3 r~IaisgKGGVGKTT~a~NL 22 (289)
T d2afhe1 3 RQCAIYGKGGIGKSTTTQNL 22 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36888999999999987554
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=85.87 E-value=0.25 Score=38.85 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=18.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
+..+.|.|++|+|||||+=.++
T Consensus 54 g~itei~G~~gsGKTtl~l~~~ 75 (263)
T d1u94a1 54 GRIVEIYGPESSGKTTLTLQVI 75 (263)
T ss_dssp TSEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEecCCCcHHHHHHHHHH
Confidence 3588999999999999985554
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=85.42 E-value=0.26 Score=40.78 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=17.5
Q ss_pred ccEEEEEcCCCCchHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSI 39 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l 39 (363)
+..++|.|..|+||||++..+
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHHH
Confidence 468899999999999988543
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=85.06 E-value=0.28 Score=38.22 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
.-|+|.|+.|+||+++.++|.
T Consensus 24 ~pvlI~Ge~GtGK~~~A~~ih 44 (247)
T d1ny5a2 24 CPVLITGESGVGKEVVARLIH 44 (247)
T ss_dssp SCEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEECCCCcCHHHHHHHHH
Confidence 468999999999999999996
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=83.78 E-value=0.17 Score=35.00 Aligned_cols=19 Identities=32% Similarity=0.167 Sum_probs=15.1
Q ss_pred CccEEEEEcCCCCchHHHH
Q 017924 18 GERTVVLLGRTGNGKSATG 36 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli 36 (363)
++.+++|.+++|+|||..+
T Consensus 6 ~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 6 KGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TTCEEEECCCTTSSTTTTH
T ss_pred cCCcEEEEcCCCCChhHHH
Confidence 4568888899999999443
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=82.69 E-value=0.35 Score=36.54 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=18.0
Q ss_pred cEEEEEcCC-CCchHHHHHHhh
Q 017924 20 RTVVLLGRT-GNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~-g~GKSTli~~l~ 40 (363)
.++.|.|.. |+||||+.-.|+
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La 23 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALL 23 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHH
Confidence 588899996 999999997765
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=82.46 E-value=0.36 Score=38.61 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=15.5
Q ss_pred ccEEEEEcCCCCchHHHH
Q 017924 19 ERTVVLLGRTGNGKSATG 36 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli 36 (363)
+..-+++|-+|+|||||-
T Consensus 14 ~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 14 GDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEEccCCCCcccce
Confidence 346789999999999987
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=81.43 E-value=0.38 Score=38.60 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=15.6
Q ss_pred ccEEEEEcCCCCchHHHH
Q 017924 19 ERTVVLLGRTGNGKSATG 36 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli 36 (363)
+..-+++|-+|.|||||-
T Consensus 14 ~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 14 GDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp CCEEEEEECTTSCHHHHT
T ss_pred CCEEEEEccCCCCccccc
Confidence 356789999999999986
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=81.08 E-value=0.44 Score=38.29 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=15.6
Q ss_pred ccEEEEEcCCCCchHHHH
Q 017924 19 ERTVVLLGRTGNGKSATG 36 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli 36 (363)
+.+-+++|-+|.|||||-
T Consensus 14 gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 14 GDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CCEEEEEccCCCCcccce
Confidence 346679999999999998
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.71 E-value=0.37 Score=38.25 Aligned_cols=24 Identities=13% Similarity=0.324 Sum_probs=19.7
Q ss_pred CCccEEEEEcCCCCchHHHHHHhh
Q 017924 17 NGERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
..+-|++|+|..|+|||+|+-.+.
T Consensus 66 g~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 66 GRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp BTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cCCCEEEeecCCCCChHHHHHHHH
Confidence 456799999999999999985443
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.35 E-value=0.52 Score=35.89 Aligned_cols=20 Identities=25% Similarity=0.513 Sum_probs=16.5
Q ss_pred EEEEE-cCCCCchHHHHHHhh
Q 017924 21 TVVLL-GRTGNGKSATGNSIL 40 (363)
Q Consensus 21 ~i~lv-G~~g~GKSTli~~l~ 40 (363)
.|+|+ |+.|+||||+.-.|+
T Consensus 3 vIav~s~KGGvGKTtia~nlA 23 (232)
T d1hyqa_ 3 TITVASGKGGTGKTTITANLG 23 (232)
T ss_dssp EEEEEESSSCSCHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 57777 999999999997654
|