Citrus Sinensis ID: 017930

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
Protein Sequence
MAVELMMEYGNTSHFTDKVEDCAVQEAASGLESVEKLINLLSQQQQVQQNNSHQSSPSSRSSMDLENDCKAVADVAVSKFKRVISLLGRNRIGHARFRRAPVAAPCVDYQQNQEKDKNLQQRQQQEVEVVPETKVYYARPIQQIPPLPPPPRNYHQHEFSTLVVPKNGVDLERKDSATTINFSNYTSAGNSFLSSLTVTGDNDNKQQPSSSSASATFHFTNLSQQVSSAGKPPLSSSSLKRKCSSASDNLASAKSCGVSSGRCHCTKKRKSRVKRVVRVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADTRNLILESS
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccccccccHHHHHHHHHHHcccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccccccEEHccccccccccccccEEEEccccccccHHHEEEcccccEEEEEEEccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAVELMMEygntshftdkvEDCAVQEAASGLESVEKLINLLSQQQQVqqnnshqsspssrssmdlenDCKAVADVAVSKFKRVISLLGrnrigharfrrapvaapcvdyqqnqekdKNLQQRQQQEvevvpetkvyyarpiqqipplpppprnyhqhefstlvvpkngvdlerkdsattinfsnytsagNSFLSsltvtgdndnkqqpssssasatfhftnlsqqvssagkpplsssslkrkcssasdnlasakscgvssgrchctkkrksrvkrvvrvpavslrlsdippddfswrkygqkpikgsphprgyykcssvrgcparkhveralddpsmLVVTYegehnhslsvadTRNLILESS
Flexible Loop (DISEMBL)
MAVELMMEYGNTSHFTDKVEDCAVQEAASGLESVEKLINLLSQQQQVQQNNSHQSSPSSRSSMDLENDCKAVADVAVSKFKRVISllgrnrigharfrrapvAAPCVDYQQNQEKDKNLQQRQQQEVEVVPETKVYYARPIQQIPPLPPPPRNYHQHEFSTLVVPKNGVDLERKDSATTINFSNYTSAGNSFLSSLTVTGDNDNKQQPSSSSASATFHFTNLSQQVSSAGKPPLSSSSLKRKCSSASDNlasakscgvssgrchctkkrksrvkrvvrvpavslrlsdippddfswrkygqkpikgsphprgyykCSSVRGCPARKHVERALDDPSMLVVTYEGehnhslsvadtrnliless
Low Complexity Region (SEG)
MAVELMMEYGNTSHFTDKVEDCAVQEAASGLESVEKLINLLsqqqqvqqnnshqsspssrssMDLENDCKAVADVAVSKFKRVISLLGRNRIGHARFRRAPVAAPCVDYQQNQEKDKNLqqrqqqevevvpeTKVYYARpiqqipplppppRNYHQHEFSTLVVPKNGVDLERKDSATTINFSNYTSAGNSFLSSLTVTGDNDNKQQPssssasaTFHFTNLSQQVssagkpplsssslkrkcssasDNLASAKSCGVSSGRCHCTkkrksrvkrvvrvPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADTRNLILESS
Disordered region (IsUnstruct)
********************************************************************CKAVADVAVSKFKRVISLLGRNRIGHARFRRAPVAAPCVDY***********************TKVYYARPI*****************FSTLVVP**************INFSNY******************************************************************************HC******RVKRVVRVPAVSLRLSDIPPDDFSWRKYG***********GYYKCSSVRGCPARKHVERALDDPSMLVVTYEG*******************
Disordered Region (DISOPRED)
MAVEL**EYGNT**FTDKVEDCAVQEAASGLESVEKL**********************************VADVAVSKFKRVI***********************************************************************************************************************************************************************************************************DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH***************
Disordered Region (DISEMBL)
MAVELMMEYGNTSHFTDKVEDCAVQEAASGLESVEKLINLLSQ***********************NDCKAVADVAVSKFKRVISLLGRNRIGHARFRRAPVAAPCVDYQQ****************EVVPETKVYYARPIQQIPPLPPPPRNYHQHEFSTLVVPKNGVDLERKDSATTINFSNYTSAGNSFLSSLTVTG**************ATFHFTNLS***************************************************RVVRVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADTRNLILESS
Disordered Region (DISPRO)
*****MMEYGNTSHFTDKVEDCAVQEAASGLESVEKLINLLSQ***********************NDCKAVADVAVSKFKRVISLLGRNRIGHARFRRAP**************************************************************************************************************************************************************************RVKRVVRVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGE******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVELMMEYGNTSHFTDKVEDCAVQEAASGLESVEKLINLLSQQQQVQQNNSHQSSPSSRSSMDLENDCKAVADVAVSKFKRVISLLGRNRIGHARFRRAPVAAPCVDYQQNQEKDKNLQQRQQQEVEVVPETKVYYARPIQQIPPLPPPPRNYHQHEFSTLVVPKNGVDLERKDSATTINFSNYTSAGNSFLSSLTVTGDNDNKQQPSSSSASATFHFTNLSQQVSSAGKPPLSSSSLKRKCSSASDNLASAKSCGVSSGRCHCTKKRKSRVKRVVRVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADTRNLILESS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	363	2.2.26 [Sep-21-2011]
Q9STX0	353	Probable WRKY transcripti	yes	no	0.862	0.886	0.457	3e-74
O22176	317	Probable WRKY transcripti	no	no	0.834	0.955	0.461	6e-68
Q9SV15	325	Probable WRKY transcripti	no	no	0.831	0.929	0.436	7e-66
Q9SJA8	321	Probable WRKY transcripti	no	no	0.787	0.890	0.428	3e-56
Q9SR07	330	Probable WRKY transcripti	no	no	0.760	0.836	0.373	2e-49
Q93WU6	330	Probable WRKY transcripti	no	no	0.757	0.833	0.369	6e-47
O04336	380	Probable WRKY transcripti	no	no	0.449	0.428	0.540	6e-46
Q32SG4	397	Protein WRKY1 OS=Zea mays	N/A	no	0.303	0.277	0.657	2e-42
Q9LP56	259	Probable WRKY transcripti	no	no	0.250	0.351	0.561	4e-25
O64747	427	Probable WRKY transcripti	no	no	0.278	0.236	0.536	5e-25

>sp|Q9STX0|WRKY7_ARATH Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1

 Score =  278 bits (712), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 177/387 (45%), Positives = 223/387 (57%), Gaps = 74/387 (19%)

Query: 1   MAVELMME-YGNTSHFTD---------KVEDCAVQEAAS-GLESVEKLINLLSQQQQVQQ 49
           M VELMM  Y       D         K+ED A++EAAS G+  VE+ + L+ Q QQ   
Sbjct: 1   MTVELMMSSYSGGGGGGDGFPAIAAAAKMEDTALREAASAGIHGVEEFLKLIGQSQQ--- 57

Query: 50  NNSHQSSPSSRSSMDLENDCKAVADVAVSKFKRVISLLGRNRIGHARFRRAPVAAPCVDY 109
                  P+ +S    + +  AV DVAV+ FK+VISLLGR+R GHARFRRAP A+    +
Sbjct: 58  -------PTEKS----QTEITAVTDVAVNSFKKVISLLGRSRTGHARFRRAP-ASTQTPF 105

Query: 110 QQNQEKDKN--------------LQQRQQQEVEVVPETKVYYARPIQQIPPLPPPPRNYH 155
           +Q    ++                +Q+ +Q        +VY   PI + PPL        
Sbjct: 106 KQTPVVEEEVEVEEKKPETSSVLTKQKTEQYHGGGSAFRVYCPTPIHRRPPL-------S 158

Query: 156 QHEFSTLVVPKNGVD-----LERKDSATTINF--SNYTSAGNSFLSSLTVTGDNDNKQQP 208
            +  +     KNG       +    + +TINF  S   SA NSF+SS     D       
Sbjct: 159 HNNNNNQNQTKNGSSSSSPPMLANGAPSTINFAPSPPVSATNSFMSSHRCDTD------- 211

Query: 209 SSSSASATFHFTNLSQQVSSAGKPPLSSSSLKRKCSSASDNLASAKSCGVSSGRCHCTKK 268
            S+  S+ F FTN SQ   S GKPPLSS+SLKR+C+S+             S RCHC+KK
Sbjct: 212 -STHMSSGFEFTNPSQLSGSRGKPPLSSASLKRRCNSSP------------SSRCHCSKK 258

Query: 269 RKSRVKRVVRVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHV 328
           RKSRVKRV+RVPAVS +++DIP D+FSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHV
Sbjct: 259 RKSRVKRVIRVPAVSSKMADIPSDEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHV 318

Query: 329 ERALDDPSMLVVTYEGEHNHSLSVADT 355
           ERALDD  ML+VTYEG+HNH+L +  T
Sbjct: 319 ERALDDAMMLIVTYEGDHNHALVLETT 345

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|O22176|WRK15_ARATH Probable WRKY transcription factor 15 OS=Arabidopsis thaliana GN=WRKY15 PE=2 SV=1

 Score =  258 bits (658), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 174/377 (46%), Positives = 218/377 (57%), Gaps = 74/377 (19%)

Query: 1   MAVELMMEYGNTSHFTDKV--EDCAVQEAA-SGLESVEKLINLLSQQQ-QVQQNNSHQSS 56
           MAVELM     T ++   V  +  AVQEAA SGL+S+E  I L+S+      Q +S  +S
Sbjct: 1   MAVELM-----TRNYISGVGADSFAVQEAAASGLKSIENFIGLMSRDSFNSDQPSSSSAS 55

Query: 57  PSSRSSMDLENDCKAVADVAVSKFKRVISLLGRNRIGHARFRRAPVAAPCVDYQQNQEKD 116
            S+ ++ DLE+     AD AVSKFKRVISLL R R GHARFRRAPV        Q + K 
Sbjct: 56  ASASAAADLESARNTTADAAVSKFKRVISLLDRTRTGHARFRRAPVHVISPVLLQEEPKT 115

Query: 117 KNLQQRQQQEVEVVPETKVYYARPIQQIPPLPPPPRNYHQHEFSTLVVPKNGVDLERKDS 176
              Q       +++                         +  FS+              S
Sbjct: 116 TPFQSPLPPPPQMI------------------------RKGSFSS--------------S 137

Query: 177 ATTINFSNYTSAGNSFLSSLTVTGDNDNK----QQPSSSSASATFHFTNLSQQVSSAGKP 232
             TI+FS+        LSS+T   DN  K    Q+PS ++  A+    +LS  VSS  K 
Sbjct: 138 MKTIDFSS--------LSSVTTESDNQKKIHHHQRPSETAPFAS-QTQSLSTTVSSFSK- 187

Query: 233 PLSSSSLKRKCSSASDNLASAK-SCGVSSGRCHCTKKRKSRVKRVVRVPAVSLRLSDIPP 291
                S KRKC+S  +NL + K +   SSGRCHC+KKRK + +R++RVPA+S ++SD+PP
Sbjct: 188 -----STKRKCNS--ENLLTGKCASASSSGRCHCSKKRKIKQRRIIRVPAISAKMSDVPP 240

Query: 292 DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLS 351
           DD+SWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERA DD SML+VTYEG+HNHSLS
Sbjct: 241 DDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAADDSSMLIVTYEGDHNHSLS 300

Query: 352 -----VADTRNLILESS 363
                 A   +LILESS
Sbjct: 301 AADLAGAAVADLILESS 317

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV15|WRK11_ARATH Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=2 SV=2

 Score =  251 bits (640), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 155/355 (43%), Positives = 203/355 (57%), Gaps = 53/355 (14%)

Query: 1   MAVELMMEYGNTSHFTDKVEDCAVQEAAS-GLESVEKLINLLSQQQQVQQNNSHQSSPSS 59
           MAV+LM        F    +  A+QEAAS GL+S+E LI +LS + + Q N         
Sbjct: 1   MAVDLM-------RFPKIDDQTAIQEAASQGLQSMEHLIRVLSNRPEQQHNV-------- 45

Query: 60  RSSMDLENDCKAVADVAVSKFKRVISLLGRNRIGHARFRRAPVAAPCVDYQQNQEKDKNL 119
                   DC  + D  VSKFK VISLL  NR GHARFRR PV +       +Q+    +
Sbjct: 46  --------DCSEITDFTVSKFKTVISLL--NRTGHARFRRGPVHS--TSSAASQKLQSQI 93

Query: 120 QQRQQQEVEVVPETKVYYARPIQQIPPLPPPPRNYHQHEFSTLVVPKNGVDLERKDSATT 179
            +  Q E  +V  T  +        P + PPP +       TL   K  +   +  SA  
Sbjct: 94  VKNTQPEAPIVRTTTNH--------PQIVPPPSSV------TLDFSKPSIFGTKAKSAE- 138

Query: 180 INFS--NYTSAGNSFLSSLTVTGDNDNKQQPSSSSASATFHFTNLSQQVSSAGKPPLSSS 237
           + FS  N++ + NS   S  +TGD        S S    F  +   Q V+S+GKPPL+  
Sbjct: 139 LEFSKENFSVSLNSSFMSSAITGDG-------SVSNGKIFLASAPLQPVNSSGKPPLAGH 191

Query: 238 SLKRKCSSASDNLA-SAKSCGVSSGRCHCTKKRKSRVKRVVRVPAVSLRLSDIPPDDFSW 296
             +++C     + + S K  G + G+CHC K RK+R+KR VRVPA+S +++DIPPD++SW
Sbjct: 192 PYRKRCLEHEHSESFSGKVSGSAYGKCHCKKSRKNRMKRTVRVPAISAKIADIPPDEYSW 251

Query: 297 RKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLS 351
           RKYGQKPIKGSPHPRGYYKCS+ RGCPARKHVERALDDP+ML+VTYEGEH H+ S
Sbjct: 252 RKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRHNQS 306

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJA8|WRK17_ARATH Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=2 SV=2

 Score =  219 bits (557), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 144/336 (42%), Positives = 183/336 (54%), Gaps = 50/336 (14%)

Query: 18  KVED-CAVQEAAS-GLESVEKLINLLSQQQQVQQNNSHQSSPSSRSSMDLENDCKAVADV 75
           K+ED  A+QEAAS GL+S+E LI +LS +            P  R+      DC  + D 
Sbjct: 10  KMEDQTAIQEAASQGLKSMEHLIRVLSNR------------PEERNV-----DCSEITDF 52

Query: 76  AVSKFKRVISLLGRNRIGHARFRRAPVAAPCVDYQQNQEKDKNLQQRQQQEVEVVPETKV 135
            VSKFK+VISLL  NR GHARFRR                               P    
Sbjct: 53  TVSKFKKVISLL--NRSGHARFRRG------------PVHSPPSSSVPPPVKVTTPA--- 95

Query: 136 YYARPIQQIPPLPPPPRNYHQHEFSTLVVPKNGVDLERKDSATTINFSN--YTSAGNSFL 193
               P Q   P P      +Q    TL   +  V   +  S+  + F+   ++ + NS  
Sbjct: 96  ----PTQISAPAPVSFVQANQQSV-TLDFTRPSVFGAKTKSSEVVEFAKESFSVSSNSSF 150

Query: 194 SSLTVTGDNDNKQQPSSSSASATFHFTNLSQQVSSAGKPPLSSSSLKRKCSSASDNLA-S 252
            S  +TGD       S S  S+ F     +  V+S+GKPPLS    +++C     +   S
Sbjct: 151 MSSAITGDG------SVSKGSSIFLAPAPAVPVTSSGKPPLSGLPYRKRCFEHDHSEGFS 204

Query: 253 AKSCGVSSGRCHCTKKRKSRVKRVVRVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRG 312
            K  G  +G+CHC K RK+R+KR VRVPAVS +++DIPPD++SWRKYGQKPIKGSPHPRG
Sbjct: 205 GKISGSGNGKCHCKKSRKNRMKRTVRVPAVSAKIADIPPDEYSWRKYGQKPIKGSPHPRG 264

Query: 313 YYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 348
           YYKCS+ RGCPARKHVERALDD +ML+VTYEGEH H
Sbjct: 265 YYKCSTFRGCPARKHVERALDDSTMLIVTYEGEHRH 300

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR07|WRK39_ARATH Probable WRKY transcription factor 39 OS=Arabidopsis thaliana GN=WRKY39 PE=2 SV=1

 Score =  196 bits (498), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 181/364 (49%), Gaps = 88/364 (24%)

Query: 26  EAA--SGLESVEKLINLLSQQQQVQQNNSHQSSPSSRSSMDLENDCKAVADVAVSKFKRV 83
           EAA  S +ES   ++NLLSQ+          S P S +    E          VSKFKRV
Sbjct: 5   EAANRSAIESCHGVLNLLSQRT---------SDPKSLTVETGE---------VVSKFKRV 46

Query: 84  ISLLGRNRIGHARFR---------------RAPVAAPCVDYQQNQEKDKNLQQRQQQEVE 128
            SLL R  +GH +FR                +P+         N       Q    + ++
Sbjct: 47  ASLLTRG-LGHGKFRSTNKFRSSFPQHIFLESPICC------GNDLSGDYTQVLAPEPLQ 99

Query: 129 VVPETKVY-YARPIQQI----------------------PPLPPPPRNYHQHEFSTLVVP 165
           +VP + VY    P  Q+                      PP   P +  H H+       
Sbjct: 100 MVPASAVYNEMEPKHQLGHPSLMLSHKMCVDKSFLELKPPPFRAPYQLIHNHQQIAYSRS 159

Query: 166 KNGVDLERKDSATTINFSNYTSAGNSFLSSLTVTGDNDNKQQPSSSSASATFHFTNLSQQ 225
            +GV+L+   S ++    + ++   SF+SSL++     +  + S       FH T LS+ 
Sbjct: 160 NSGVNLKFDGSGSSCYTPSVSNGSRSFVSSLSMDASVTDYDRNS-------FHLTGLSRG 212

Query: 226 VSSAGKPPLSSSSLKRKCSSASDNLASAKSCGVSSGRCHCTKKRKSRVKRVVRVPAVSLR 285
                   + S SLK               CG S  +CHC+KKRK RVKR ++VPA+S +
Sbjct: 213 SDQQHTRKMCSGSLK---------------CG-SRSKCHCSKKRKLRVKRSIKVPAISNK 256

Query: 286 LSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGE 345
           ++DIPPD++SWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVER +D+ SML+VTYEGE
Sbjct: 257 IADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCIDETSMLIVTYEGE 316

Query: 346 HNHS 349
           HNHS
Sbjct: 317 HNHS 320

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU6|WRK74_ARATH Probable WRKY transcription factor 74 OS=Arabidopsis thaliana GN=WRKY74 PE=2 SV=2

 Score =  188 bits (477), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 135/365 (36%), Positives = 182/365 (49%), Gaps = 90/365 (24%)

Query: 26  EAA--SGLESVEKLINLLSQQQQVQQNNSHQSSPSSRSSMDLENDCKAV---ADVAVSKF 80
           EAA  + +ES   ++NLLSQQ                      ND K++      AV KF
Sbjct: 5   EAANKAAVESCHGVLNLLSQQT---------------------NDSKSIMVETREAVCKF 43

Query: 81  KRVISLLGRNRIGHARFRRAPVAAPCVDYQQNQEKDKNLQQRQQQEVEVVPETK------ 134
           KRV SLL R  +G  + ++       ++    +     L Q    E  V           
Sbjct: 44  KRVSSLLSRG-LGQRKIKK-------LNNNNYKFSSSLLPQHMFLESPVCSNNAISGCIP 95

Query: 135 VYYARPIQQIPPLPPP--------------------------PRNY---HQHEFSTLVVP 165
           +   +P+Q +P  PPP                          P+ Y   H H+       
Sbjct: 96  ILAPKPLQIVPAGPPPLMLFNQNMCLDKSFLELKPPSSRAVDPKPYQFIHTHQQGVYSRS 155

Query: 166 KNGVDLERKDSATTINFSNYTSAGN-SFLSSLTVTGDNDNKQQPSSSSASATFHFTNLSQ 224
           K+G++L+   S     +S   S G+ SF+SSL++ G   +  + S       FH   L Q
Sbjct: 156 KSGLNLKFDGSIGASCYSPSISNGSRSFVSSLSMDGSVTDYDRNS-------FHLIGLPQ 208

Query: 225 QVSSAGKPPLSSSSLKRKCSSASDNLASAKSCGVSSGRCHCTKKRKSRVKRVVRVPAVSL 284
                G   +S  S +  CS +         CG S  +CHC+KKRK RVKR ++VPA+S 
Sbjct: 209 -----GSDHISQHSRRTSCSGSLK-------CG-SKSKCHCSKKRKLRVKRSIKVPAISN 255

Query: 285 RLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEG 344
           +++DIPPD++SWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVER +++ SML+VTYEG
Sbjct: 256 KIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVEETSMLIVTYEG 315

Query: 345 EHNHS 349
           EHNHS
Sbjct: 316 EHNHS 320

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O04336|WRK21_ARATH Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=2 SV=1

 Score =  184 bits (468), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 99/183 (54%), Positives = 124/183 (67%), Gaps = 20/183 (10%)

Query: 171 LERKDSATTINFSNYT-----SAGNSFLSSLTVTGDNDNKQQPSSSSASATFHFTNLSQQ 225
           L + +   +++F N +     S+  SF+SSL++ G   N +  +S      FHF      
Sbjct: 203 LRKCNGGISLSFDNSSCTPTMSSTRSFVSSLSIDGSVANIEGKNS------FHFG----V 252

Query: 226 VSSAGKPPLSSSSLKRKCSSASDNLASAKSCGVSSGRCHCTKKRKSRVKRVVRVPAVSLR 285
            SS  +  L S   KRKC    D   S K CG SS RCHC KKRK RV+R +RVPA+S +
Sbjct: 253 PSSTDQNSLHS---KRKCPLKGDEHGSLK-CG-SSSRCHCAKKRKHRVRRSIRVPAISNK 307

Query: 286 LSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGE 345
           ++DIPPDD+SWRKYGQKPIKGSP+PRGYYKCSS+RGCPARKHVER L+DP+ML+VTYE E
Sbjct: 308 VADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERCLEDPAMLIVTYEAE 367

Query: 346 HNH 348
           HNH
Sbjct: 368 HNH 370

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q32SG4|WRKY1_MAIZE Protein WRKY1 OS=Zea mays PE=1 SV=1

 Score =  173 bits (438), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 93/114 (81%), Gaps = 4/114 (3%)

Query: 240 KRKCSSASDNLASAKSCGVSSGRCHCTKKRKSRVKRVVRVPAVSLRLSDIPPDDFSWRKY 299
           +R+C+   D       C   S RCHC+KKRK R++R ++VPA+S +++DIP D+FSWRKY
Sbjct: 285 RRRCAGREDGTGR---CATGS-RCHCSKKRKLRIRRSIKVPAISNKVADIPADEFSWRKY 340

Query: 300 GQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVA 353
           GQKPIKGSPHPRGYYKCSSVRGCPARKHVER +DDPSML+VTYEG+HNH+  +A
Sbjct: 341 GQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVDDPSMLIVTYEGDHNHNRVLA 394

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Zea mays (taxid: 4577)

>sp|Q9LP56|WRK65_ARATH Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1

 Score =  115 bits (289), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 70/98 (71%), Gaps = 7/98 (7%)

Query: 267 KKRKSRVKRVVRVPAVSLRLS-----DIPPDD-FSWRKYGQKPIKGSPHPRGYYKCSSVR 320
           + R+S  KRVV VP   +  S       PP D ++WRKYGQKPIKGSP+PRGYY+CSS +
Sbjct: 44  RSRRSVEKRVVNVPMKEMEGSRHKGDTTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSTK 103

Query: 321 GCPARKHVERALDDPSMLVVTYEGEHNHSLSV-ADTRN 357
           GCPARK VER+ DDP+M+++TY  EHNH   + + TRN
Sbjct: 104 GCPARKQVERSRDDPTMILITYTSEHNHPWPLTSSTRN 141

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O64747|WRK35_ARATH Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1

 Score =  115 bits (288), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 59/110 (53%), Positives = 74/110 (67%), Gaps = 9/110 (8%)

Query: 248 DNLASAKSCG----VSSGRCHCTKKRKSRVKRVVRVPAVSLRLSD-----IPPDDFSWRK 298
           DN  +  SC      SS R    K+RKS+ K+VV +PA +   S      +P D ++WRK
Sbjct: 163 DNNNNTSSCSQVQISSSPRNLGIKRRKSQAKKVVCIPAPAAMNSRSSGEVVPSDLWAWRK 222

Query: 299 YGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 348
           YGQKPIKGSP+PRGYY+CSS +GC ARK VER+  DP+MLV+TY  EHNH
Sbjct: 223 YGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNH 272

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
259121417	334	WRKY transcription factor 26 [(Populus t	0.909	0.988	0.702	1e-123
118488759	334	unknown [Populus trichocarpa]	0.909	0.988	0.700	1e-123
224094280	335	predicted protein [Populus trichocarpa]	0.909	0.985	0.698	1e-122
259121405	331	WRKY transcription factor 20 [(Populus t	0.906	0.993	0.665	1e-117
225438803	336	PREDICTED: probable WRKY transcription f	0.914	0.988	0.643	1e-108
302399117	330	WRKY domain class transcription factor [	0.887	0.975	0.630	1e-105
356496927	321	PREDICTED: probable WRKY transcription f	0.873	0.987	0.621	1e-105
302651862	330	WRKY disease resistance protein [Malus x	0.887	0.975	0.625	1e-104
408690823	383	WRKY transcription factor 46_b06 [Papave	0.969	0.919	0.571	1e-104
256372802	330	WRKY transcription factor [Malus hupehen	0.887	0.975	0.625	1e-103

>gi|259121417|gb|ACV92028.1| WRKY transcription factor 26 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 258/367 (70%), Positives = 291/367 (79%), Gaps = 37/367 (10%)

Query: 1   MAVELMMEYGNTSH-FTDKVEDCAVQEAASGLESVEKLINLLSQQQQVQQNNSHQSSPSS 59
           MAVEL+M Y N     T K+E+ AVQEAASGLESV KLI LLSQ+ Q  QN    S+ +S
Sbjct: 1   MAVELVMGYRNDGFAITSKMEENAVQEAASGLESVNKLIRLLSQKNQ--QNLHQSSTSTS 58

Query: 60  RSSMDLENDCKAVADVAVSKFKRVISLLGRNRIGHARFRRAPVAAPCVDYQQNQEKDKNL 119
           R+SMD E DCKAVAD AVSKFK+VISLLGRNR GHARFRRAPV+ P ++           
Sbjct: 59  RTSMDTEIDCKAVADAAVSKFKKVISLLGRNRTGHARFRRAPVSTPPIN----------- 107

Query: 120 QQRQQQEVEVVPE--TKVYYARPIQQIPPLPPPPRNYHQHEFSTLVVPKNGVDLERKDSA 177
            QRQ+   +V PE  TKVYYA PIQQIPP   P  N + +    ++VPKNGV +ERKDSA
Sbjct: 108 -QRQELSYQV-PEANTKVYYATPIQQIPP---PVLNQNHYP---ILVPKNGV-MERKDSA 158

Query: 178 TT-INFSNYTSAGNSFLSSLTVTGDNDNKQQPSSSSASATFHFTNLSQQVSSAGKPPLSS 236
           TT INFS Y+SAGNSF+SSLT  GD D+KQ PSSSSA   F FTN+SQ VSSAGKPPLS+
Sbjct: 159 TTTINFS-YSSAGNSFVSSLT--GDTDSKQ-PSSSSA---FQFTNVSQ-VSSAGKPPLST 210

Query: 237 SSLKRKCSSASDNLASAKSCGVSSGRCHCTKKRKSRVKRVVRVPAVSLRLSDIPPDDFSW 296
           SSLKRKCSS  +NL SA  CG S GRCHC+KKRK R+KRVVRVPA+SL++SDIPPDD+SW
Sbjct: 211 SSLKRKCSS--ENLDSAGKCG-SPGRCHCSKKRKMRLKRVVRVPAISLKMSDIPPDDYSW 267

Query: 297 RKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADTR 356
           RKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH++SVA+T 
Sbjct: 268 RKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTISVAETS 327

Query: 357 NLILESS 363
           NLILESS
Sbjct: 328 NLILESS 334

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488759|gb|ABK96190.1| unknown [Populus trichocarpa]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 257/367 (70%), Positives = 292/367 (79%), Gaps = 37/367 (10%)

Query: 1   MAVELMMEYGNTSH-FTDKVEDCAVQEAASGLESVEKLINLLSQQQQVQQNNSHQSSPSS 59
           MAVEL+M Y N     T K+E+ AVQEAASGLESV KLI LLSQ+ Q  QN    S+ +S
Sbjct: 1   MAVELVMGYRNDGFAITSKMEENAVQEAASGLESVNKLIRLLSQKNQ--QNLHQSSTSTS 58

Query: 60  RSSMDLENDCKAVADVAVSKFKRVISLLGRNRIGHARFRRAPVAAPCVDYQQNQEKDKNL 119
           R+SMD+E DCKAVAD AVSKFK+VISLLGRNR GHARFRRAPV+ P ++           
Sbjct: 59  RTSMDMEIDCKAVADAAVSKFKKVISLLGRNRTGHARFRRAPVSTPPIN----------- 107

Query: 120 QQRQQQEVEVVPE--TKVYYARPIQQIPPLPPPPRNYHQHEFSTLVVPKNGVDLERKDSA 177
            QRQ+   +V PE  TKVYYA PIQQIPP   P  N + +    ++VPKNGV +ERKDSA
Sbjct: 108 -QRQELSYQV-PEANTKVYYATPIQQIPP---PVLNQNHYP---ILVPKNGV-MERKDSA 158

Query: 178 TT-INFSNYTSAGNSFLSSLTVTGDNDNKQQPSSSSASATFHFTNLSQQVSSAGKPPLSS 236
           TT INFS Y+SAGNSF+SSLT  GD D+KQ PSSSSA   F FTN+SQ VSSAGKPPLS+
Sbjct: 159 TTTINFS-YSSAGNSFVSSLT--GDTDSKQ-PSSSSA---FQFTNVSQ-VSSAGKPPLST 210

Query: 237 SSLKRKCSSASDNLASAKSCGVSSGRCHCTKKRKSRVKRVVRVPAVSLRLSDIPPDDFSW 296
           SSLKRKCSS  +NL SA  CG S GRCHC+KKRK R+KRVVRVPA+SL++SDIPPDD+SW
Sbjct: 211 SSLKRKCSS--ENLDSAGKCG-SPGRCHCSKKRKMRLKRVVRVPAISLKMSDIPPDDYSW 267

Query: 297 RKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADTR 356
           RKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEG+HNH++SVA+T 
Sbjct: 268 RKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGDHNHTISVAETS 327

Query: 357 NLILESS 363
           NLILESS
Sbjct: 328 NLILESS 334

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094280|ref|XP_002310122.1| predicted protein [Populus trichocarpa] gi|222853025|gb|EEE90572.1| predicted protein [Populus trichocarpa]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 257/368 (69%), Positives = 292/368 (79%), Gaps = 38/368 (10%)

Query: 1   MAVELMMEYGNTSH-FTDKVEDCAVQEAASGLESVEKLINLLSQQQQVQQNNSHQSSPSS 59
           MAVEL+M Y N     T K+E+ AVQEAASGLESV KLI LLSQ+ Q  QN    S+ +S
Sbjct: 1   MAVELVMGYRNDGFAITSKMEENAVQEAASGLESVNKLIRLLSQKNQ--QNLHQSSTSTS 58

Query: 60  RSSMDLENDCKAVADVAVSKFKRVISLLGRNRIGHARFRRAPVAAPCVDYQQNQEKDKNL 119
           R+SMD+E DCKAVAD AVSKFK+VISLLGRNR GHARFRRAPV+ P ++           
Sbjct: 59  RTSMDMEIDCKAVADAAVSKFKKVISLLGRNRTGHARFRRAPVSTPPIN----------- 107

Query: 120 QQRQQQEVEVVPE--TKVYYARPIQQIPPLPPPPRNYHQHEFSTLVVPKNGVDLERKDSA 177
            QRQ+   +V PE  TKVYYA PIQQIPP   P  N + +    ++VPKNGV +ERKDSA
Sbjct: 108 -QRQELSYQV-PEANTKVYYATPIQQIPP---PVLNQNHYP---ILVPKNGV-MERKDSA 158

Query: 178 TT-INFSNYTSAGNSFLSSLTVTGDNDNKQQPSSSSASATFHFTNLSQQVSSAGKPPLSS 236
           TT INFS Y+SAGNSF+SSLT  GD D+KQ PSSSSA   F FTN+SQ VSSAGKPPLS+
Sbjct: 159 TTTINFS-YSSAGNSFVSSLT--GDTDSKQ-PSSSSA---FQFTNVSQ-VSSAGKPPLST 210

Query: 237 SSLKRKCSSASDNLASAKSCGVSSGRCHCTKK-RKSRVKRVVRVPAVSLRLSDIPPDDFS 295
           SSLKRKCSS  +NL SA  CG S GRCHC+KK RK R+KRVVRVPA+SL++SDIPPDD+S
Sbjct: 211 SSLKRKCSS--ENLDSAGKCG-SPGRCHCSKKSRKMRLKRVVRVPAISLKMSDIPPDDYS 267

Query: 296 WRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADT 355
           WRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEG+HNH++SVA+T
Sbjct: 268 WRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGDHNHTISVAET 327

Query: 356 RNLILESS 363
            NLILESS
Sbjct: 328 SNLILESS 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121405|gb|ACV92022.1| WRKY transcription factor 20 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 243/365 (66%), Positives = 283/365 (77%), Gaps = 36/365 (9%)

Query: 1   MAVELMMEYGNTSH-FTDKVEDCAVQEAASGLESVEKLINLLSQQQQVQQNNSHQSS-PS 58
           MAVELMM Y N     T K+E+ AV+EAASGLESV KLI LLS Q Q    N HQSS P+
Sbjct: 1   MAVELMMAYRNDGFAITSKMEENAVEEAASGLESVNKLIRLLSLQNQ---ENLHQSSTPT 57

Query: 59  SRSSMDLENDCKAVADVAVSKFKRVISLLGRNRIGHARFRRAPVAAPCVDYQQNQEKDKN 118
           SR+SMD+E DCKAVADVA  KFK+V+SLL RNR GHARFRRAPV+ P V+          
Sbjct: 58  SRTSMDVEMDCKAVADVAAPKFKKVVSLLPRNRTGHARFRRAPVSTPPVN---------- 107

Query: 119 LQQRQQQEVEVVPETKVYYARPIQQIPPLPPPPRNYHQHEFSTLVVPKNGVDLERKDSAT 178
             Q Q+Q+ +V+   +VYYA PIQQIPP   P  N + +    +V  KNG ++ERKDSAT
Sbjct: 108 --QIQEQDYQVLEANQVYYATPIQQIPP---PDHNQNHY---PIVESKNG-EIERKDSAT 158

Query: 179 TINFSNYTSAGNSFLSSLTVTGDNDNKQQPSSSSASATFHFTNLSQQVSSAGKPPLSSSS 238
           TINFS  +SAGNSF+SSLT  GD D+KQ     S+S++FH TN+S+ VSSAGKPPLS+S 
Sbjct: 159 TINFS-CSSAGNSFVSSLT--GDTDSKQ----PSSSSSFHITNVSR-VSSAGKPPLSTS- 209

Query: 239 LKRKCSSASDNLASAKSCGVSSGRCHCTKKRKSRVKRVVRVPAVSLRLSDIPPDDFSWRK 298
           LKRKCSS  +N  SA  C  SSGRC C+KKRK R+KRVVRVPA+SL++SDIPPDD+SWRK
Sbjct: 210 LKRKCSS--ENSDSAGKCA-SSGRCRCSKKRKMRLKRVVRVPAISLKMSDIPPDDYSWRK 266

Query: 299 YGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADTRNL 358
           YGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEH+H++SVA+T NL
Sbjct: 267 YGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHSHTISVAETSNL 326

Query: 359 ILESS 363
           ILESS
Sbjct: 327 ILESS 331

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438803|ref|XP_002283219.1| PREDICTED: probable WRKY transcription factor 7-like [Vitis vinifera]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 236/367 (64%), Positives = 274/367 (74%), Gaps = 35/367 (9%)

Query: 1   MAVELMMEYGNTSHFTDKVEDCAVQEAASGLESVEKLINLLSQQQQVQQNNSHQSSPSSR 60
           MAVELMM Y N   F DK+E+ AVQEAA+GLESVEKLI LLS  QQ Q     Q     R
Sbjct: 1   MAVELMMGYRNDG-FADKMEENAVQEAAAGLESVEKLIRLLSHGQQQQSQQQPQQQ-LGR 58

Query: 61  SSMDLENDCKAVADVAVSKFKRVISLLGRNRIGHARFRRAPVAAPCVDYQQNQEKDKNLQ 120
           SS ++E DC+AVADVAVSKFK+VISLLGR R GHARFRRAP+++P    +++Q       
Sbjct: 59  SSGEMEMDCRAVADVAVSKFKKVISLLGRTRTGHARFRRAPLSSPPNQSEESQGGG---- 114

Query: 121 QRQQQEVEVVPETKVYYARPIQQIPPLPPPPRNYHQ-HEFSTLVVPKNGVDLERKDSATT 179
                       ++VY   PIQQ+PP+P   +N HQ H    +V  +NGV ++RKDS TT
Sbjct: 115 ------------SRVYCPVPIQQVPPVPI--QNQHQPHNDPPVVFARNGV-IDRKDSTTT 159

Query: 180 INFSNYTSA---GNSFLSSLTVTGDNDNKQQPSSSSASATFHFTNLSQQVSSAGKPPLSS 236
           INFS Y+SA    NSF+SSLT  GD D+KQ PSSSSA   F  TNLSQ VSS G+PPLSS
Sbjct: 160 INFS-YSSAISGANSFMSSLT--GDTDSKQ-PSSSSA---FQITNLSQ-VSSVGRPPLSS 211

Query: 237 SSLKRKCSSASDNLASAKSCGVSSGRCHCTKKRKSRVKRVVRVPAVSLRLSDIPPDDFSW 296
           SS+KRKCSS SDN   +  CG SSGRCHC K+RK ++KRVVRVPA+S++++DIPPDDFSW
Sbjct: 212 SSMKRKCSS-SDN-PGSGKCGGSSGRCHCLKRRKMKLKRVVRVPAISMKMADIPPDDFSW 269

Query: 297 RKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADTR 356
           RKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDP ML+VTYEGEHNHSLSVA+  
Sbjct: 270 RKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPKMLIVTYEGEHNHSLSVAEAA 329

Query: 357 NLILESS 363
            LILESS
Sbjct: 330 GLILESS 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399117|gb|ADL36853.1| WRKY domain class transcription factor [Malus x domestica]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 234/371 (63%), Positives = 266/371 (71%), Gaps = 49/371 (13%)

Query: 1   MAVELMMEYGNT----SHFTDKVEDCAVQEAASGLESVEKLINLLSQQQQVQQNNSHQSS 56
           MAV+ M  Y NT    S F+ K+E+ AVQEAASGLESVEKLI LLSQ QQ Q    + S+
Sbjct: 1   MAVDFM-GYRNTISSSSSFSAKLEENAVQEAASGLESVEKLIRLLSQAQQNQHQGKYPST 59

Query: 57  PSSRSSMDLENDCKAVADVAVSKFKRVISLLGRNRIGHARFRRAPVAAPCVDYQQNQEKD 116
                +MD+  DC+AVADVAVSKFK+VISLLGR R GHARFRRAP+        Q Q + 
Sbjct: 60  -----AMDM--DCRAVADVAVSKFKKVISLLGRTRTGHARFRRAPLTLSSGSSSQTQNQS 112

Query: 117 KNLQQRQQQEVEVVP----ETKVYYARPIQQIPPLPPPPRNYHQHEFSTLVVPKNGVDLE 172
           + +       V+ VP     TKVY+A PIQQIPP    P ++H           + V   
Sbjct: 113 QEIL------VKHVPLPLESTKVYHATPIQQIPP----PHHHH-----------STVLES 151

Query: 173 RKDSATTINFSNYTSAGNSFLSSLTVTGDNDNKQQPSSSSASATFHFTNLSQQVSSAGKP 232
            KDS+TTINFS    A  SF+SSLT  GD+D+KQ  SSSS    F  TNLSQ VSSAGKP
Sbjct: 152 TKDSSTTINFSY--PATTSFISSLT--GDSDSKQPMSSSS----FQITNLSQ-VSSAGKP 202

Query: 233 PLSSSSLKRKCSSASDNLASAKSCGVSSGRCHCTKKRKSRVKRVVRVPAVSLRLSDIPPD 292
           PLSS+SLKRKCSS  +NL S K    SSGRCHC KKRK R KR+VRVPA+SL+L+DIPPD
Sbjct: 203 PLSSASLKRKCSS--ENLGSGKCGAGSSGRCHC-KKRKLRQKRIVRVPAISLKLADIPPD 259

Query: 293 DFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSV 352
           D+SWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDD +MLVVTYEGEHNHSLSV
Sbjct: 260 DYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDAAMLVVTYEGEHNHSLSV 319

Query: 353 ADTRNLILESS 363
           A+T NLILESS
Sbjct: 320 AETSNLILESS 330

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496927|ref|XP_003517316.1| PREDICTED: probable WRKY transcription factor 15-like [Glycine max]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 228/367 (62%), Positives = 255/367 (69%), Gaps = 50/367 (13%)

Query: 1   MAVELMMEYGNTSHFTDKVEDCAVQEAASGLESVEKLINLLSQQQQVQQNNSHQSSPSSR 60
           MAVE MM Y N +      ED AV+EAASGLESVEKLI LLS  QQ  Q        +S+
Sbjct: 1   MAVEFMMGYRNDTF----AEDNAVREAASGLESVEKLIKLLSHTQQQYQT-------TSK 49

Query: 61  SSMD-LENDCKAVADVAVSKFKRVISLLGRNRIGHARFRRAPVAAPCVDYQQNQEKDKNL 119
           SSM+ ++ D  AVADVAVSKFK+VISLLGR R GHARFRRA                  +
Sbjct: 50  SSMENIDTDYTAVADVAVSKFKKVISLLGRTRTGHARFRRA-----------------PV 92

Query: 120 QQRQQQEVEVVPETKVYYARPIQQIPPLPPPPRNYHQHEFST-LVVPKNGVDLERKDSAT 178
                       E +VY A P+QQIPP        H H  +   ++PK    +ERKDS+ 
Sbjct: 93  PVPVPVASPPPSEPRVYRATPLQQIPP-----PTLHTHSVTDHSLIPK----IERKDSSK 143

Query: 179 TINFSNYTSAGNSFLSSLTVTGDNDNKQQPSSSSASAT-FHFTNLSQQVSSAGKPPLSSS 237
           TINFS      NSF+SSLT  GD D KQ  SSS + AT F  TNLSQ VSSAGKPPLSSS
Sbjct: 144 TINFS----YSNSFVSSLTA-GDTDTKQPCSSSPSPATAFQITNLSQ-VSSAGKPPLSSS 197

Query: 238 SLKRKCSSASDNLASAKSCGVSSGRCHCTKK-RKSRVKRVVRVPAVSLRLSDIPPDDFSW 296
           SLKRKCSS  +NL SAK CG SS RCHC+KK RK R KRVVRVPA+SL+++DIPPDD+SW
Sbjct: 198 SLKRKCSS--ENLGSAK-CGSSSSRCHCSKKSRKMRQKRVVRVPAISLKMADIPPDDYSW 254

Query: 297 RKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADTR 356
           RKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH+LS A+  
Sbjct: 255 RKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSAAEAT 314

Query: 357 NLILESS 363
           NLILESS
Sbjct: 315 NLILESS 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302651862|gb|ADL60501.1| WRKY disease resistance protein [Malus x domestica]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/371 (62%), Positives = 266/371 (71%), Gaps = 49/371 (13%)

Query: 1   MAVELMMEYGNT----SHFTDKVEDCAVQEAASGLESVEKLINLLSQQQQVQQNNSHQSS 56
           MAV+ M  Y NT    S F+ K+E+ AVQEAASGLESVEKLI LLSQ QQ Q    + S+
Sbjct: 1   MAVDFM-GYRNTISSSSSFSAKLEENAVQEAASGLESVEKLIRLLSQAQQNQHQGKYPST 59

Query: 57  PSSRSSMDLENDCKAVADVAVSKFKRVISLLGRNRIGHARFRRAPVAAPCVDYQQNQEKD 116
                +MD+  DC+AVADVAVSKFK+VISLLGR R GHARFRRAP+        Q Q + 
Sbjct: 60  -----AMDM--DCRAVADVAVSKFKKVISLLGRTRTGHARFRRAPLTLSSGSSSQTQNQS 112

Query: 117 KNLQQRQQQEVEVVP----ETKVYYARPIQQIPPLPPPPRNYHQHEFSTLVVPKNGVDLE 172
           + +       V+ VP     TKVY+A PIQQIPP    P ++H           + V   
Sbjct: 113 QEIL------VKHVPLPLESTKVYHATPIQQIPP----PHHHH-----------STVLES 151

Query: 173 RKDSATTINFSNYTSAGNSFLSSLTVTGDNDNKQQPSSSSASATFHFTNLSQQVSSAGKP 232
            KDS+TTINFS    A  SF+SSLT  GD+D+KQ  SSSS    F  TNLSQ VSSAGKP
Sbjct: 152 TKDSSTTINFS--YPATTSFISSLT--GDSDSKQPMSSSS----FQITNLSQ-VSSAGKP 202

Query: 233 PLSSSSLKRKCSSASDNLASAKSCGVSSGRCHCTKKRKSRVKRVVRVPAVSLRLSDIPPD 292
           PLSS+SLKRKCSS  +NL S K    SSGRCHC KKR+ R KR+VRVPA+SL+L+DIPPD
Sbjct: 203 PLSSASLKRKCSS--ENLGSGKCGAGSSGRCHC-KKRELRQKRIVRVPAISLKLADIPPD 259

Query: 293 DFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSV 352
           D+SWRKYG+KPIKGSPHPRGYYKCSSVRGCPARKHVERALDD +MLVVTYEGEHNHSLSV
Sbjct: 260 DYSWRKYGRKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDAAMLVVTYEGEHNHSLSV 319

Query: 353 ADTRNLILESS 363
           A+T NLILESS
Sbjct: 320 AETSNLILESS 330

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|408690823|gb|AFU81789.1| WRKY transcription factor 46_b06 [Papaver somniferum]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/394 (57%), Positives = 277/394 (70%), Gaps = 42/394 (10%)

Query: 1   MAVELMMEYGNTSHFTDKVED---CAVQEAAS-GLESVEKLINLLSQQQQVQQNNSHQSS 56
           MAV+LMM+Y NT   T K+++    +V+EAAS GLES EKLI LL+Q+QQ QQ    +  
Sbjct: 1   MAVDLMMDYRNTDFITKKIQESNNTSVEEAASAGLESFEKLIRLLNQRQQQQQKYEQEKE 60

Query: 57  PSSR---SSMDLENDCKAVADVAVSKFKRVISLLGRNRIGHARFRRAPVAAPC------- 106
                  S+ D++ DCKAVADVAV++FK+VISLLGR R GHARFRRAP+           
Sbjct: 61  KEEENQKSAKDIDLDCKAVADVAVNEFKKVISLLGRTRTGHARFRRAPLQNSNPSLPPPP 120

Query: 107 ----VDYQQNQEKDKNLQQRQQQEVE------VVPETKVYYARPIQQIPPLPPPPRNYH- 155
               V+   +     +LQ  QQQ  +      +   ++VY   PIQ++PPLP    + H 
Sbjct: 121 QPQHVEKPISLNHQIHLQNHQQQPKDEKSQQFIGSSSRVYCPTPIQRLPPLPSSSSHQHP 180

Query: 156 ---QHEFSTLVVPKNGVDLERKDSATTINFSN---YTSAGNSFLSSLTVTGDNDNKQQPS 209
               +++ +LV+ KNGV  ERK+++TTINF++     SA  SFLSSLT  GD D KQQ S
Sbjct: 181 HHQNNKYPSLVMSKNGVISERKETSTTINFTSPSPSMSAATSFLSSLT--GDTDMKQQHS 238

Query: 210 SSSASATFHFTNLSQQVSSAGKPPLSSSSLKRKCSSASDNLASAKSCGVSSGRCHCTKKR 269
           SSSA   F  TN+SQ   S+G+PPLSS+SLKRKC S+ D  A    CG S GRCHC+K+R
Sbjct: 239 SSSA---FQLTNISQ---SSGRPPLSSASLKRKCMSSGD--AGGAKCG-SHGRCHCSKRR 289

Query: 270 KSRVKRVVRVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVE 329
           KSRVKRVVRVPA+SL+++DIPPDD+SWRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVE
Sbjct: 290 KSRVKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVE 349

Query: 330 RALDDPSMLVVTYEGEHNHSLSVADTRNLILESS 363
           RALDDP+ML+VTYEGEHNHS SV DT  LILESS
Sbjct: 350 RALDDPTMLIVTYEGEHNHSHSVTDTTGLILESS 383

Source: Papaver somniferum

Species: Papaver somniferum

Genus: Papaver

Family: Papaveraceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|256372802|gb|ACU78079.1| WRKY transcription factor [Malus hupehensis]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 232/371 (62%), Positives = 266/371 (71%), Gaps = 49/371 (13%)

Query: 1   MAVELMMEYGNT----SHFTDKVEDCAVQEAASGLESVEKLINLLSQQQQVQQNNSHQSS 56
           MAV+  M Y NT    S F+ K+E+ AVQEAASGLESVEKLI LLSQ QQ Q    + S+
Sbjct: 1   MAVD-SMGYRNTISSSSSFSAKLEENAVQEAASGLESVEKLIRLLSQAQQNQHQGKYPST 59

Query: 57  PSSRSSMDLENDCKAVADVAVSKFKRVISLLGRNRIGHARFRRAPVAAPCVDYQQNQEKD 116
                +MD+  DC+AVADVAVSKFK+VISLLGR R GHARFRRAP+        Q Q + 
Sbjct: 60  -----AMDM--DCRAVADVAVSKFKKVISLLGRTRTGHARFRRAPLTLSSGSSSQTQNQS 112

Query: 117 KNLQQRQQQEVEVVP----ETKVYYARPIQQIPPLPPPPRNYHQHEFSTLVVPKNGVDLE 172
           + +       V+ VP     TKVY+A PIQQIPP    P ++H     ++V+        
Sbjct: 113 QEIL------VKHVPLPLESTKVYHATPIQQIPP----PHHHH-----SMVLEST----- 152

Query: 173 RKDSATTINFSNYTSAGNSFLSSLTVTGDNDNKQQPSSSSASATFHFTNLSQQVSSAGKP 232
            KDS+TTINFS    A  SF+SSLT  GD+D+KQ  SSSS    F  TNLSQ VSSAGKP
Sbjct: 153 -KDSSTTINFS--YPATTSFMSSLT--GDSDSKQPMSSSS----FQITNLSQ-VSSAGKP 202

Query: 233 PLSSSSLKRKCSSASDNLASAKSCGVSSGRCHCTKKRKSRVKRVVRVPAVSLRLSDIPPD 292
           PLSS+SLK KCSS  +NL S K    SSGRCHC KKRK R KR+VRVPA+SL+L+DIPPD
Sbjct: 203 PLSSASLKWKCSS--ENLGSGKCGAGSSGRCHC-KKRKLRQKRIVRVPAISLKLADIPPD 259

Query: 293 DFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSV 352
           D+SWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVE ALDD +MLVVTYEGEHNHSLSV
Sbjct: 260 DYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVEGALDDAAMLVVTYEGEHNHSLSV 319

Query: 353 ADTRNLILESS 363
           A+T NLILESS
Sbjct: 320 AETSNLILESS 330

Source: Malus hupehensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
TAIR|locus:2058568	317	WRKY15 "WRKY DNA-binding prote	0.462	0.529	0.508	7.8e-58
TAIR|locus:2046653	321	WRKY17 "WRKY DNA-binding prote	0.275	0.311	0.65	9.3e-51
TAIR|locus:2125239	325	WRKY11 "WRKY DNA-binding prote	0.275	0.307	0.65	1e-49
TAIR|locus:2135967	353	WRKY7 "WRKY DNA-binding protei	0.289	0.297	0.663	3.7e-48
TAIR|locus:2064377	380	WRKY21 "WRKY DNA-binding prote	0.272	0.260	0.663	5.7e-44
TAIR|locus:2084943	330	WRKY39 "WRKY DNA-binding prote	0.256	0.281	0.680	1.2e-43
TAIR|locus:2148815	330	WRKY74 "WRKY DNA-binding prote	0.256	0.281	0.670	4.5e-38
UNIPROTKB|Q32SG4	397	Q32SG4 "Protein WRKY1" [Zea ma	0.267	0.244	0.663	3.1e-37
TAIR|locus:2029919	259	WRKY65 "WRKY DNA-binding prote	0.187	0.262	0.652	2.3e-23
TAIR|locus:2044777	427	WRKY35 "WRKY DNA-binding prote	0.165	0.140	0.7	4.8e-21

TAIR|locus:2058568 WRKY15 "WRKY DNA-binding protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
 Identities = 91/179 (50%), Positives = 106/179 (59%)

Query:   191 SFLSSLTVTGDNDNKQQPXXXXXXXTFHFTNLSQQVXXXXXXXXXXXXXXXXXXXXXDNL 250
             S LSS+T   DN  K          T  F + +Q +                     +NL
Sbjct:   144 SSLSSVTTESDNQKKIH-HHQRPSETAPFASQTQSLSTTVSSFSKSTKRKCNS----ENL 198

Query:   251 ASAKSCGVSS-GRCHCTXXXXXXXXXXXXXPAVSLRLSDIPPDDFSWRKYGQKPIKGSPH 309
              + K    SS GRCHC+             PA+S ++SD+PPDD+SWRKYGQKPIKGSPH
Sbjct:   199 LTGKCASASSSGRCHCSKKRKIKQRRIIRVPAISAKMSDVPPDDYSWRKYGQKPIKGSPH 258

Query:   310 PRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVAD-----TRNLILESS 363
             PRGYYKCSSVRGCPARKHVERA DD SML+VTYEG+HNHSLS AD       +LILESS
Sbjct:   259 PRGYYKCSSVRGCPARKHVERAADDSSMLIVTYEGDHNHSLSAADLAGAAVADLILESS 317

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2046653 WRKY17 "WRKY DNA-binding protein 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 9.3e-51, Sum P(3) = 9.3e-51
 Identities = 65/100 (65%), Positives = 75/100 (75%)

Query:   252 SAKSCGVSSGRCHCTXXXXXXXXXXXXXPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPR 311
             S K  G  +G+CHC              PAVS +++DIPPD++SWRKYGQKPIKGSPHPR
Sbjct:   204 SGKISGSGNGKCHCKKSRKNRMKRTVRVPAVSAKIADIPPDEYSWRKYGQKPIKGSPHPR 263

Query:   312 GYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLS 351
             GYYKCS+ RGCPARKHVERALDD +ML+VTYEGEH H  S
Sbjct:   264 GYYKCSTFRGCPARKHVERALDDSTMLIVTYEGEHRHHQS 303

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2125239 WRKY11 "WRKY DNA-binding protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
 Identities = 65/100 (65%), Positives = 77/100 (77%)

Query:   252 SAKSCGVSSGRCHCTXXXXXXXXXXXXXPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPR 311
             S K  G + G+CHC              PA+S +++DIPPD++SWRKYGQKPIKGSPHPR
Sbjct:   207 SGKVSGSAYGKCHCKKSRKNRMKRTVRVPAISAKIADIPPDEYSWRKYGQKPIKGSPHPR 266

Query:   312 GYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLS 351
             GYYKCS+ RGCPARKHVERALDDP+ML+VTYEGEH H+ S
Sbjct:   267 GYYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRHNQS 306

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2135967 WRKY7 "WRKY DNA-binding protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
 Identities = 71/107 (66%), Positives = 80/107 (74%)

Query:   251 ASAKS-CGVS-SGRCHCTXXXXXXXXXXXXXPAVSLRLSDIPPDDFSWRKYGQKPIKGSP 308
             AS K  C  S S RCHC+             PAVS +++DIP D+FSWRKYGQKPIKGSP
Sbjct:   239 ASLKRRCNSSPSSRCHCSKKRKSRVKRVIRVPAVSSKMADIPSDEFSWRKYGQKPIKGSP 298

Query:   309 HPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADT 355
             HPRGYYKCSSVRGCPARKHVERALDD  ML+VTYEG+HNH+L +  T
Sbjct:   299 HPRGYYKCSSVRGCPARKHVERALDDAMMLIVTYEGDHNHALVLETT 345

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA;IPI

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2064377 WRKY21 "WRKY DNA-binding protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 5.7e-44, Sum P(3) = 5.7e-44
 Identities = 67/101 (66%), Positives = 77/101 (76%)

Query:   248 DNLASAKSCGVSSGRCHCTXXXXXXXXXXXXXPAVSLRLSDIPPDDFSWRKYGQKPIKGS 307
             D   S K CG SS RCHC              PA+S +++DIPPDD+SWRKYGQKPIKGS
Sbjct:   272 DEHGSLK-CG-SSSRCHCAKKRKHRVRRSIRVPAISNKVADIPPDDYSWRKYGQKPIKGS 329

Query:   308 PHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 348
             P+PRGYYKCSS+RGCPARKHVER L+DP+ML+VTYE EHNH
Sbjct:   330 PYPRGYYKCSSMRGCPARKHVERCLEDPAMLIVTYEAEHNH 370

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

TAIR|locus:2084943 WRKY39 "WRKY DNA-binding protein 39" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.2e-43, Sum P(3) = 1.2e-43
 Identities = 64/94 (68%), Positives = 75/94 (79%)

Query:   256 CGVSSGRCHCTXXXXXXXXXXXXXPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYK 315
             CG S  +CHC+             PA+S +++DIPPD++SWRKYGQKPIKGSPHPRGYYK
Sbjct:   228 CG-SRSKCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYK 286

Query:   316 CSSVRGCPARKHVERALDDPSMLVVTYEGEHNHS 349
             CSSVRGCPARKHVER +D+ SML+VTYEGEHNHS
Sbjct:   287 CSSVRGCPARKHVERCIDETSMLIVTYEGEHNHS 320

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

TAIR|locus:2148815 WRKY74 "WRKY DNA-binding protein 74" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
 Identities = 63/94 (67%), Positives = 75/94 (79%)

Query:   256 CGVSSGRCHCTXXXXXXXXXXXXXPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYK 315
             CG S  +CHC+             PA+S +++DIPPD++SWRKYGQKPIKGSPHPRGYYK
Sbjct:   228 CG-SKSKCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYK 286

Query:   316 CSSVRGCPARKHVERALDDPSMLVVTYEGEHNHS 349
             CSSVRGCPARKHVER +++ SML+VTYEGEHNHS
Sbjct:   287 CSSVRGCPARKHVERCVEETSMLIVTYEGEHNHS 320

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

UNIPROTKB|Q32SG4 Q32SG4 "Protein WRKY1" [Zea mays (taxid:4577)]

 Score = 372 (136.0 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
 Identities = 65/98 (66%), Positives = 76/98 (77%)

Query:   256 CGVSSGRCHCTXXXXXXXXXXXXXPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYK 315
             C   S RCHC+             PA+S +++DIP D+FSWRKYGQKPIKGSPHPRGYYK
Sbjct:   298 CATGS-RCHCSKKRKLRIRRSIKVPAISNKVADIPADEFSWRKYGQKPIKGSPHPRGYYK 356

Query:   316 CSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVA 353
             CSSVRGCPARKHVER +DDPSML+VTYEG+HNH+  +A
Sbjct:   357 CSSVRGCPARKHVERCVDDPSMLIVTYEGDHNHNRVLA 394

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2029919 WRKY65 "WRKY DNA-binding protein 65" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 45/69 (65%), Positives = 57/69 (82%)

Query:   290 PPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHS 349
             P D ++WRKYGQKPIKGSP+PRGYY+CSS +GCPARK VER+ DDP+M+++TY  EHNH 
Sbjct:    73 PSDSWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRDDPTMILITYTSEHNHP 132

Query:   350 LSV-ADTRN 357
               + + TRN
Sbjct:   133 WPLTSSTRN 141

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2044777 WRKY35 "WRKY DNA-binding protein 35" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 42/60 (70%), Positives = 51/60 (85%)

Query:   289 IPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 348
             +P D ++WRKYGQKPIKGSP+PRGYY+CSS +GC ARK VER+  DP+MLV+TY  EHNH
Sbjct:   213 VPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNH 272

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9STX0	WRKY7_ARATH	No assigned EC number	0.4573	0.8622	0.8866	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0019002001 SubName- Full=Putative uncharacterized protein; (335 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	363
smart00774	59	smart00774, WRKY, DNA binding domain	5e-36
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	2e-33
pfam10533	47	pfam10533, Plant_zn_clust, Plant zinc cluster doma	5e-15

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  124 bits (314), Expect = 5e-36
 Identities = 38/59 (64%), Positives = 48/59 (81%), Gaps = 1/59 (1%)

Query: 291 PDD-FSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 348
            DD + WRKYGQK IKGSP+PR YY+C+  +GCPA+K V+R+ DDPS++ VTYEGEH H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  117 bits (296), Expect = 2e-33
 Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 1/61 (1%)

Query: 290 PPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHS 349
             D ++WRKYGQKP+KGSP PR YY+C+S  GCP +K VER+ DDP ++ +TYEGEHNH 
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTS-PGCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Query: 350 L 350
            
Sbjct: 60  K 60

Length = 60

>gnl|CDD|192617 pfam10533, Plant_zn_clust, Plant zinc cluster domain

 Score = 68.2 bits (167), Expect = 5e-15
 Identities = 28/49 (57%), Positives = 38/49 (77%), Gaps = 2/49 (4%)

Query: 240 KRKCSSASDNLASAKSCGVSSGRCHCTKKRKSRVKRVVRVPAVSLRLSD 288
           K++CS A+D  +  K    SSGRCHC+KKRKSRVKR +RVPA+S +++D
Sbjct: 1   KKRCSEAND--SEGKCAASSSGRCHCSKKRKSRVKRTIRVPAISSKIAD 47

This zinc binding domain was identified by Babu and colleagues and found associated with the WRKY domain pfam03106. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	363
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
PF10533	47	Plant_zn_clust: Plant zinc cluster domain; InterPr	99.43
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	89.01
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	87.05
PF05344	65	DUF746: Domain of Unknown Function (DUF746); Inter	86.99

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=5e-31  Score=201.63  Aligned_cols=59  Identities=63%  Similarity=1.222  Sum_probs=56.8

Q ss_pred             CCCcccccccCCcccCCCCCCcccccCCCCCCCccccceeecCCCCCEEEEEeeccCCC
Q 017930          290 PPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH  348 (363)
Q Consensus       290 ~~Dgy~WRKYGQK~Ikgs~~PR~YYrCs~~~gC~A~K~Vqr~~~Dp~~~~vtY~G~H~h  348 (363)
                      ++|||.|||||||.|+|+++||+||||++.+||+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            36999999999999999999999999996689999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=4e-31  Score=202.33  Aligned_cols=59  Identities=63%  Similarity=1.278  Sum_probs=51.9

Q ss_pred             CCcccccccCCcccCCCCCCcccccCCCCCCCccccceeecCCCCCEEEEEeeccCCCCC
Q 017930          291 PDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSL  350 (363)
Q Consensus       291 ~Dgy~WRKYGQK~Ikgs~~PR~YYrCs~~~gC~A~K~Vqr~~~Dp~~~~vtY~G~H~h~~  350 (363)
                      +|||+|||||||.|+|++|||+||||++ .+|+|+|+|||+.+|+.+++|||+|+|||+.
T Consensus         2 ~Dgy~WRKYGqK~i~g~~~pRsYYrCt~-~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    2 DDGYRWRKYGQKNIKGSPYPRSYYRCTH-PGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             -SSS-EEEEEEEEETTTTCEEEEEEEEC-TTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCchhhccCcccCCCceeeEeeeccc-cChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            6999999999999999999999999995 6999999999999999999999999999973

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF10533 Plant_zn_clust: Plant zinc cluster domain; InterPro: IPR018872 This zinc binding domain is found associated with the WRKY domain IPR003657 from INTERPRO []

Probab=99.43  E-value=8.5e-14  Score=102.31  Aligned_cols=46  Identities=67%  Similarity=1.120  Sum_probs=38.6

Q ss_pred             cccCCCCCCCccccccc-CCCCCccccCcccccccceEEEEecccccCCC
Q 017930          240 KRKCSSASDNLASAKSC-GVSSGRCHCTKKRKSRVKRVVRVPAVSLRLSD  288 (363)
Q Consensus       240 k~~c~~~~~~~~~~k~~-~~~~~~~~cskrrk~r~kr~irv~ais~~~~d  288 (363)
                      |++|++  .++.+++ | .+++|+|||+||||+|+||+||||||+.+++|
T Consensus         1 krkC~~--~~~~~~~-~~~sssgrCHCsKkRK~RvKR~irVPAiS~K~AD   47 (47)
T PF10533_consen    1 KRKCHS--HNDSSGK-CKCSSSGRCHCSKKRKSRVKRTIRVPAISSKIAD   47 (47)
T ss_pred             CCcccc--cCcccCc-cccCCCCcccCCCcccccceeeEEeecccccccC
Confidence            578998  4444455 4 47889999999999999999999999999875

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=89.01  E-value=0.33  Score=38.43  Aligned_cols=32  Identities=41%  Similarity=0.584  Sum_probs=26.7

Q ss_pred             CCCCccccceeecCCCCCEEEEEeeccCCCCCC
Q 017930          319 VRGCPARKHVERALDDPSMLVVTYEGEHNHSLS  351 (363)
Q Consensus       319 ~~gC~A~K~Vqr~~~Dp~~~~vtY~G~H~h~~~  351 (363)
                      -.||+|+=.|.+.. |....++.+..+|||+..
T Consensus        59 ktgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~   90 (91)
T PF03101_consen   59 KTGCKARINVKRRK-DGKWRVTSFVLEHNHPLC   90 (91)
T ss_pred             ccCCCEEEEEEEcc-CCEEEEEECcCCcCCCCC
Confidence            35899998888766 777888899999999864

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.05  E-value=0.26  Score=35.82  Aligned_cols=48  Identities=31%  Similarity=0.615  Sum_probs=23.9

Q ss_pred             CCcccccccCCcccCCCCCCcccccCCC--CCCCccccceeecCCCCCEEEEEeeccCCC
Q 017930          291 PDDFSWRKYGQKPIKGSPHPRGYYKCSS--VRGCPARKHVERALDDPSMLVVTYEGEHNH  348 (363)
Q Consensus       291 ~Dgy~WRKYGQK~Ikgs~~PR~YYrCs~--~~gC~A~K~Vqr~~~Dp~~~~vtY~G~H~h  348 (363)
                      -|||.-+++...      ....|++|+.  ..+|+|+=.+.  .++ ..++ ...++|||
T Consensus        13 ~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~-~~~~-~~~~~HnH   62 (62)
T PF04500_consen   13 YDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGD-GRVV-RTNGEHNH   62 (62)
T ss_dssp             ETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----T-TEEE-E-S---SS
T ss_pred             ECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCC-CEEE-ECCCccCC
Confidence            488887766554      3458999995  23799988777  333 3433 35599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF05344 DUF746: Domain of Unknown Function (DUF746); InterPro: IPR008008 This is a short conserved region found in some transposons

Probab=86.99  E-value=0.73  Score=36.66  Aligned_cols=59  Identities=34%  Similarity=0.354  Sum_probs=40.5

Q ss_pred             hHHHHHHHHhccchhhhcccCCCCCCCCCCcccccchhHHHHHHHHhhhhhhhhccCCCCCCc--cccccCCCCC
Q 017930           32 ESVEKLINLLSQQQQVQQNNSHQSSPSSRSSMDLENDCKAVADVAVSKFKRVISLLGRNRIGH--ARFRRAPVAA  104 (363)
Q Consensus        32 eS~e~Li~lLSq~~~~~q~~~~~~~~~~~~~~~~~~d~~~itd~AVsKFKkVISLL~rtRTGH--ARFRR~P~~~  104 (363)
                      |.++.||++||++-.-.+-           ......| ..++..-|.+|++-+=.||  ++||  +|+|-|=.+.
T Consensus         1 ~~~~~fIrlLs~~~s~~~A-----------a~~lG~~-~~~v~~wv~~fR~wll~LD--PSG~~E~RVRLg~r~a   61 (65)
T PF05344_consen    1 EKARAFIRLLSQQISVAQA-----------ADRLGTD-PGTVRRWVRMFRQWLLQLD--PSGHWEARVRLGVRPA   61 (65)
T ss_pred             CcHHHHHHHhcccccHHHH-----------HHHHCcC-HHHHHHHHHHHHHHHHHcC--CCCChHHHhhcCCCCC
Confidence            3578999999987422110           0112223 3455678999999999999  8998  9999876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	363
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		2e-17
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		2e-17

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 288 DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHN 347
           D+  D + WRKYGQK +KG+P+PR YYKC++  GC  RKHVERA  DP  +V TYEG+HN
Sbjct: 15  DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATDPKAVVTTYEGKHN 73
Query: 348 HSL 350
           H L
Sbjct: 74  HDL 76

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 286 LSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGE 345
           L DI  D + WRKYGQK +KGSP+PR YY+CSS  GCP +KHVER+  D  +L+ TYEG+
Sbjct: 10  LFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP-GCPVKKHVERSSHDTKLLITTYEGK 68
Query: 346 HNHSL 350
           H+H +
Sbjct: 69  HDHDM 73
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	363
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	1e-34
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	4e-34

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  121 bits (305), Expect = 1e-34
 Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 1/76 (1%)

Query: 278 RVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSM 337
           R+   +  L DI  D + WRKYGQK +KGSP+PR YY+CSS  GCP +KHVER+  D  +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKL 60

Query: 338 LVVTYEGEHNHSLSVA 353
           L+ TYEG+H+H +   
Sbjct: 61  LITTYEGKHDHDMPPG 76

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  119 bits (301), Expect = 4e-34
 Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 4/76 (5%)

Query: 278 RVPAVSLRLS---DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDD 334
              +  ++ +   D+  D + WRKYGQK +KG+P+PR YYKC++  GC  RKHVERA  D
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATD 60

Query: 335 PSMLVVTYEGEHNHSL 350
           P  +V TYEG+HNH L
Sbjct: 61  PKAVVTTYEGKHNHDL 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	363
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.97
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.97

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.97  E-value=3.3e-33  Score=222.04  Aligned_cols=67  Identities=57%  Similarity=1.130  Sum_probs=63.5

Q ss_pred             cCCCCCCCcccccccCCcccCCCCCCcccccCCCCCCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 017930          285 RLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSV  352 (363)
Q Consensus       285 ~~~di~~Dgy~WRKYGQK~Ikgs~~PR~YYrCs~~~gC~A~K~Vqr~~~Dp~~~~vtY~G~H~h~~~~  352 (363)
                      ...++++|||.|||||||.|||++|||+||||++ .||+|+|+|||+++|+.+++|||+|+|||+.|.
T Consensus         9 ~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            9 TLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            4578899999999999999999999999999995 799999999999999999999999999999875

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.97  E-value=8.8e-33  Score=220.53  Aligned_cols=67  Identities=57%  Similarity=1.083  Sum_probs=63.3

Q ss_pred             cCCCCCCCcccccccCCcccCCCCCCcccccCCCCCCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 017930          285 RLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSV  352 (363)
Q Consensus       285 ~~~di~~Dgy~WRKYGQK~Ikgs~~PR~YYrCs~~~gC~A~K~Vqr~~~Dp~~~~vtY~G~H~h~~~~  352 (363)
                      ...++++|||.|||||||.|||++|||+||||++ +||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus        12 s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A           12 SEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             CCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            4568899999999999999999999999999995 899999999999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	363
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	3e-28

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  102 bits (257), Expect = 3e-28
 Identities = 38/64 (59%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 287 SDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEH 346
            D+  D + WRKYGQK +KG+P+PR YYKC++  GC  RKHVERA  DP  +V TYEG+H
Sbjct: 7   VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKH 65

Query: 347 NHSL 350
           NH L
Sbjct: 66  NHDL 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	363
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.97

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=3e-33  Score=217.78  Aligned_cols=67  Identities=57%  Similarity=1.083  Sum_probs=62.7

Q ss_pred             cCCCCCCCcccccccCCcccCCCCCCcccccCCCCCCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 017930          285 RLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSV  352 (363)
Q Consensus       285 ~~~di~~Dgy~WRKYGQK~Ikgs~~PR~YYrCs~~~gC~A~K~Vqr~~~Dp~~~~vtY~G~H~h~~~~  352 (363)
                      ...++++|||.|||||||.|+|++|||+||||++ .||+|+|+|||+++|+.+++|||+|+|||+.|.
T Consensus         5 ~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~-~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           5 SEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             cccccCCCCcEecccCceeccCCCCceEEEEccc-cCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            3457889999999999999999999999999994 899999999999999999999999999998773