Citrus Sinensis ID: 017945

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLVLWVW
cccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHEEEHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHEccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHccccHHHHHHHEEHHHHHHHHHHHHHHHHHHHcccccEEEEEEHHHHHHEEEcc
MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCvlsplyvwsppvlmlfGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFItksdgawsgfSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLatrynfpflftnseavAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLVLWVW
MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLVLWVW
MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSwllilklgwgligaaiTLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVglplgillgftfgfgAEVTYYLSFSLALLVLWVW
*****ETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLVLWVW
MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLVLWVW
MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLVLWVW
**SALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLVLWVW
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHi
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHi
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHi
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MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLVLWVW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query363 2.2.26 [Sep-21-2011]
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.947 0.678 0.463 7e-81
Q9LUH3469 MATE efflux family protei no no 0.953 0.737 0.342 6e-51
Q9LUH2477 MATE efflux family protei no no 0.953 0.725 0.340 3e-50
Q8GXM8476 MATE efflux family protei no no 0.906 0.691 0.338 3e-48
Q9SIA5476 MATE efflux family protei no no 0.928 0.707 0.334 1e-47
Q8RWF5483 MATE efflux family protei no no 0.933 0.701 0.335 3e-45
Q9SIA1477 MATE efflux family protei no no 0.925 0.704 0.326 2e-44
Q9SIA3476 MATE efflux family protei no no 0.903 0.689 0.348 2e-44
Q9SIA4476 MATE efflux family protei no no 0.914 0.697 0.326 1e-43
Q10085455 Uncharacterized transport yes no 0.922 0.736 0.299 8e-32
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  301 bits (770), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 160/345 (46%), Positives = 231/345 (66%), Gaps = 1/345 (0%)

Query: 1   MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEIS 60
           M SA++T+CGQA+GA     +G+  QR+ V+ L  +  L+ LY +S P+L   G++  I+
Sbjct: 109 MASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIA 168

Query: 61  NAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGW 120
           +    FA  M+PQ++A+AL  P+Q+FLQAQ  V  +A++S  V +LH L +WL+   L +
Sbjct: 169 HEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDF 228

Query: 121 GLIGAAITLNLSWWLIVILQLLYIFITKS-DGAWSGFSWLAFADLWAFVKLSLASAVMLC 179
           GL+GAA+ L+ SWWL+V +  +YI ++ +    W+GFS  AF  +W + KL++ASAVMLC
Sbjct: 229 GLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLC 288

Query: 180 LEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNA 239
           LE WY   LV+I+G L N  I++DAIS+CM    WD    +G +AAISVRVSNELGAGN 
Sbjct: 289 LEIWYNQGLVIISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNP 348

Query: 240 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMN 299
           R A  SV+VV+IT V I     ++VL  R      FT+   V A  + L  LLA+++ +N
Sbjct: 349 RVAMLSVVVVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLN 408

Query: 300 CLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFG 344
            +QP+LSGVA+G+GWQ++VAY+NL  YY++GLP+G +LGF    G
Sbjct: 409 GIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLG 453
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q10085|YAO6_SCHPO Uncharacterized transporter C11D3.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.06 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
255538528 483 multidrug resistance pump, putative [Ric 0.950 0.714 0.826 1e-163
225458414 479 PREDICTED: protein TRANSPARENT TESTA 12 0.953 0.722 0.794 1e-155
147855628459 hypothetical protein VITISV_019245 [Viti 0.953 0.753 0.794 1e-155
356564233 487 PREDICTED: protein TRANSPARENT TESTA 12- 0.953 0.710 0.797 1e-154
356564231 483 PREDICTED: protein TRANSPARENT TESTA 12- 0.953 0.716 0.797 1e-154
356552151 483 PREDICTED: protein TRANSPARENT TESTA 12- 0.953 0.716 0.777 1e-151
297846968 484 hypothetical protein ARALYDRAFT_473896 [ 0.953 0.714 0.757 1e-150
15220246 484 MATE efflux family protein [Arabidopsis 0.953 0.714 0.751 1e-149
16604505 484 At1g47530/F16N3_20 [Arabidopsis thaliana 0.953 0.714 0.751 1e-149
357438069 473 Protein TRANSPARENT TESTA [Medicago trun 0.911 0.699 0.734 1e-139
>gi|255538528|ref|XP_002510329.1| multidrug resistance pump, putative [Ricinus communis] gi|223551030|gb|EEF52516.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 285/345 (82%), Positives = 315/345 (91%)

Query: 1   MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEIS 60
           MGSALETLCGQA+GAG +RMLGVYMQRSWVILL T+C+L P+YVWSPP+L L GET +IS
Sbjct: 91  MGSALETLCGQAYGAGQLRMLGVYMQRSWVILLTTACLLVPIYVWSPPILELIGETTQIS 150

Query: 61  NAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGW 120
            AAGKFA+WMLPQLFAYA+NFPIQKFLQ+Q KV VMAWISA VLVLHA+FSWLLILKLGW
Sbjct: 151 EAAGKFAIWMLPQLFAYAVNFPIQKFLQSQSKVYVMAWISAAVLVLHAIFSWLLILKLGW 210

Query: 121 GLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCL 180
           GL GAAITLN SWW+IVI QLLYIFITKSDGAWSGF+WLAFADL  FVKLSLASAVMLCL
Sbjct: 211 GLTGAAITLNTSWWIIVIAQLLYIFITKSDGAWSGFTWLAFADLGGFVKLSLASAVMLCL 270

Query: 181 EFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNAR 240
           EFWYLM+LVVITGRLPN LI VDAIS+CMN+QGWDAMIA+GFNAAISVRVSNELGAGN+R
Sbjct: 271 EFWYLMILVVITGRLPNPLIPVDAISICMNLQGWDAMIALGFNAAISVRVSNELGAGNSR 330

Query: 241 AAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNC 300
            AK+SV VVS+T+++IGV C  LV ATR  FP+LFT S+AVA ETTKL++LL ITVL+N 
Sbjct: 331 RAKYSVKVVSVTSISIGVVCMALVFATRDYFPYLFTTSDAVAKETTKLAVLLGITVLLNS 390

Query: 301 LQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGA 345
           LQPVLSGVAVGAGWQSLVAYIN+GCYY+VGLP GILLGFTFGFGA
Sbjct: 391 LQPVLSGVAVGAGWQSLVAYINIGCYYVVGLPAGILLGFTFGFGA 435

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225458414|ref|XP_002281913.1| PREDICTED: protein TRANSPARENT TESTA 12 [Vitis vinifera] gi|302142423|emb|CBI19626.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147855628|emb|CAN79163.1| hypothetical protein VITISV_019245 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356564233|ref|XP_003550360.1| PREDICTED: protein TRANSPARENT TESTA 12-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356564231|ref|XP_003550359.1| PREDICTED: protein TRANSPARENT TESTA 12-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356552151|ref|XP_003544433.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information
>gi|297846968|ref|XP_002891365.1| hypothetical protein ARALYDRAFT_473896 [Arabidopsis lyrata subsp. lyrata] gi|297337207|gb|EFH67624.1| hypothetical protein ARALYDRAFT_473896 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15220246|ref|NP_175184.1| MATE efflux family protein [Arabidopsis thaliana] gi|5668808|gb|AAD46034.1|AC007519_19 F16N3.20 [Arabidopsis thaliana] gi|332194060|gb|AEE32181.1| MATE efflux family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|16604505|gb|AAL24258.1| At1g47530/F16N3_20 [Arabidopsis thaliana] gi|27764936|gb|AAO23589.1| At1g47530/F16N3_20 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357438069|ref|XP_003589310.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355478358|gb|AES59561.1| Protein TRANSPARENT TESTA [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query363
TAIR|locus:2015368484 AT1G47530 "AT1G47530" [Arabido 0.906 0.679 0.729 3.2e-129
TAIR|locus:2144421498 AT5G38030 "AT5G38030" [Arabido 0.903 0.658 0.567 7.4e-98
TAIR|locus:2088822500 AT3G26590 "AT3G26590" [Arabido 0.903 0.656 0.554 8.7e-95
TAIR|locus:2010401522 RSH2 "AT1G12950" [Arabidopsis 0.903 0.628 0.548 1.1e-94
TAIR|locus:2126036542 AT4G00350 "AT4G00350" [Arabido 0.898 0.601 0.547 5.5e-93
TAIR|locus:2028115515 AT1G23300 "AT1G23300" [Arabido 0.903 0.636 0.530 1.9e-92
TAIR|locus:2089955506 AT3G21690 "AT3G21690" [Arabido 0.906 0.650 0.503 1.7e-84
TAIR|locus:2027322503 AT1G11670 "AT1G11670" [Arabido 0.906 0.654 0.490 1.3e-82
TAIR|locus:2036848501 AT1G61890 "AT1G61890" [Arabido 0.906 0.656 0.493 3.6e-82
TAIR|locus:2168210486 AT5G65380 "AT5G65380" [Arabido 0.903 0.674 0.475 1.4e-80
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1268 (451.4 bits), Expect = 3.2e-129, P = 3.2e-129
 Identities = 240/329 (72%), Positives = 278/329 (84%)

Query:     1 MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEIS 60
             MGSALETLCGQA+GAG IRM+G+YMQRSWVIL  T+  L P+Y+W+PP+L  FGE   IS
Sbjct:    93 MGSALETLCGQAYGAGQIRMMGIYMQRSWVILFTTALFLLPVYIWAPPILSFFGEAPHIS 152

Query:    61 NAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSXXXXXXXXX 120
              AAGKFALWM+PQLFAYA NFPIQKFLQ+QRKVLVMAWIS +VLV+HA+FS         
Sbjct:   153 KAAGKFALWMIPQLFAYAANFPIQKFLQSQRKVLVMAWISGVVLVIHAVFSWLFILYFKW 212

Query:   121 XXXXXXXTLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCL 180
                    TLN SWWLIVI QLLYI ITKSDGAW+GFS LAF DL+ FVKLSLASA+MLCL
Sbjct:   213 GLVGAAITLNTSWWLIVIGQLLYILITKSDGAWTGFSMLAFRDLYGFVKLSLASALMLCL 272

Query:   181 EFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNAR 240
             EFWYLM+LVV+TG LPN LI VDAIS+CMNI+GW AMI+IGFNAAISVRVSNELGAGNA 
Sbjct:   273 EFWYLMVLVVVTGLLPNPLIPVDAISICMNIEGWTAMISIGFNAAISVRVSNELGAGNAA 332

Query:   241 AAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNC 300
              AKFSV+VVSIT+  IG+ C I+VLAT+ +FP+LFT+SEAVAAETT++++LL  TVL+N 
Sbjct:   333 LAKFSVIVVSITSTLIGIVCMIVVLATKDSFPYLFTSSEAVAAETTRIAVLLGFTVLLNS 392

Query:   301 LQPVLSGVAVGAGWQSLVAYINLGCYYIV 329
             LQPVLSGVAVGAGWQ+LVAY+N+ CYYI+
Sbjct:   393 LQPVLSGVAVGAGWQALVAYVNIACYYII 421
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0009835 "fruit ripening" evidence=ISS
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126036 AT4G00350 "AT4G00350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028115 AT1G23300 "AT1G23300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027322 AT1G11670 "AT1G11670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00014697001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (479 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-117
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 1e-37
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 2e-29
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 3e-29
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 3e-24
pfam01554161 pfam01554, MatE, MatE 2e-18
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 6e-18
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 8e-16
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 3e-15
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 4e-15
pfam01554161 pfam01554, MatE, MatE 1e-14
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 2e-14
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 4e-13
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 2e-10
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 2e-09
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 3e-07
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 3e-05
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 4e-05
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 8e-05
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 2e-04
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 7e-04
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 0.001
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 0.002
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 0.004
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  347 bits (892), Expect = e-117
 Identities = 160/345 (46%), Positives = 231/345 (66%), Gaps = 2/345 (0%)

Query: 1   MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEIS 60
           + SAL+TLCGQAFGA + +++GVY+QR+ VILL+    +S L++ + P+L+L G+  EI+
Sbjct: 59  LASALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIA 118

Query: 61  NAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGW 120
             AG++  W++P LFAYAL  P++++LQAQ  VL + +IS + L+L+ L ++LL+  LG 
Sbjct: 119 RLAGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGL 178

Query: 121 GLIGAAITLNLSWWLIVILQLLYIFITKSDGA-WSGFSWLAFADLWAFVKLSLASAVMLC 179
           G IGAA+  ++S+WLIV+L LLYIF +K   A W GFS  AF     F+KL++ SA+MLC
Sbjct: 179 GFIGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLC 238

Query: 180 LEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNA 239
           LE+W   +LV++ G LP   +A+ A S+C+       MI +G + A SVRV NELGAGN 
Sbjct: 239 LEWWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNP 297

Query: 240 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMN 299
           + AK + +V  I ++ IGV   IL+L  R  + +LFT+ E V A    L  +LA+  + +
Sbjct: 298 KRAKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFD 357

Query: 300 CLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFG 344
            LQ VLSGV  G G Q L AY+NL  YY++GLP+G+LL F  G G
Sbjct: 358 GLQAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLG 402

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 363
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 99.98
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.97
PRK10459492 colanic acid exporter; Provisional 99.94
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.92
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.92
PRK10189 478 MATE family multidrug exporter; Provisional 99.92
PRK00187 464 multidrug efflux protein NorA; Provisional 99.91
COG2244480 RfbX Membrane protein involved in the export of O- 99.91
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.9
PRK01766 456 multidrug efflux protein; Reviewed 99.9
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.84
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.81
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.59
TIGR01695502 mviN integral membrane protein MviN. This model re 99.48
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.45
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.44
TIGR02900 488 spore_V_B stage V sporulation protein B. SpoVB is 99.41
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.39
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.34
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.34
PRK15099 416 O-antigen translocase; Provisional 99.09
PRK10459492 colanic acid exporter; Provisional 99.02
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.95
COG2244480 RfbX Membrane protein involved in the export of O- 98.79
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.67
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.62
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.16
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.03
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 97.89
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.8
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 97.79
COG4267467 Predicted membrane protein [Function unknown] 97.43
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 97.33
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.08
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3e-50  Score=367.34  Aligned_cols=356  Identities=25%  Similarity=0.335  Sum_probs=335.7

Q ss_pred             CcchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHH
Q 017945            1 MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYAL   79 (363)
Q Consensus         1 i~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~   79 (363)
                      +++|+++++||++|++|+++.++..++++++.++++++.+++ +.+.++++.+++.++++.+.+.+|+++...+.|+..+
T Consensus        72 l~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~  151 (455)
T COG0534          72 LGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALL  151 (455)
T ss_pred             HHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            367999999999999999999999999999999999888877 9999999999999888999999999999999999999


Q ss_pred             HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH-hc-CChhhHHHHHHHHHHHHHHHHHHHHHHhcc--cccCCC
Q 017945           80 NFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK-LG-WGLIGAAITLNLSWWLIVILQLLYIFITKS--DGAWSG  155 (363)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~  155 (363)
                      +..+.+.+|+.||+|.+++.+.+++++|+++|++++++ ++ +|+.|+++||++++.+.++..+++++++++  .....+
T Consensus       152 ~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~  231 (455)
T COG0534         152 SFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKK  231 (455)
T ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence            99999999999999999999999999999999999998 57 999999999999999999999999988853  333334


Q ss_pred             CCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017945          156 FSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELG  235 (363)
Q Consensus       156 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~g  235 (363)
                      ..+.+++.+|++++.|+|.++++..........+.+.+++|++  ++|+|+++.++.++.+++..|++++.+|+++|++|
T Consensus       232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~G  309 (455)
T COG0534         232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTV--ALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLG  309 (455)
T ss_pred             ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4466788999999999999999999999999999999999954  99999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcc
Q 017945          236 AGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQ  315 (363)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~  315 (363)
                      +||+|++++..+.+..+++.++.....+++++++++.++|++|+|+.+.+..++++..+..++++.+.+..+.+||.||+
T Consensus       310 a~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~  389 (455)
T COG0534         310 AGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDA  389 (455)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 017945          316 SLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLV  359 (363)
Q Consensus       316 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~l~  359 (363)
                      |.+++.++.+.|.+.+|..|++.... +|..|+|++..+.+.+.
T Consensus       390 ~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~  432 (455)
T COG0534         390 KIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILR  432 (455)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHH
Confidence            99999999999999999999999876 79999999997655443

>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 6e-05
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 5/178 (2%)
Query: 133 WWLIVILQLLYIFITK---SDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLV 189
           +W++++L L YI  +K       +  F      +L    +L    A  L  E     ++ 
Sbjct: 203 YWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVA 262
Query: 190 VITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVV 249
           ++   L + ++A  A  V +N      M  +   AA+S+RV ++LG  + + A  +  V 
Sbjct: 263 LLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVG 320
Query: 250 SITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSG 307
            +T +       +L +  R     L+T ++ V A   +L +  AI   M+ +Q V +G
Sbjct: 321 LMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAG 378
  Database: pdbaa

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query363
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 7e-50
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  172 bits (438), Expect = 7e-50
 Identities = 69/352 (19%), Positives = 142/352 (40%), Gaps = 9/352 (2%)

Query: 1   MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEIS 60
           +  AL  +  Q  GAG    +   + +  ++ L+ S  +  +   +  ++        ++
Sbjct: 67  LLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMA 126

Query: 61  NAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLG- 119
                +   ++  + AY L   ++ F            I  I L+L+   +W+ +     
Sbjct: 127 TKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFG 186

Query: 120 ---WGLIGAAITLNLSWWLIVILQLLYIFITKSD---GAWSGFSWLAFADLWAFVKLSLA 173
               G +G  +   + +W++++L L YI  +K       +  F      +L    +L   
Sbjct: 187 APELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFP 246

Query: 174 SAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNE 233
            A  L  E     ++ ++   L + ++A  A  V +N      M  +   AA+S+RV ++
Sbjct: 247 VAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAVSIRVGHK 304

Query: 234 LGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLA 293
           LG  + + A  +  V  +T +       +L +  R     L+T ++ V A   +L +  A
Sbjct: 305 LGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAA 364

Query: 294 ITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGA 345
           I   M+ +Q V +G   G    + + +     Y+++GLP G +LG T     
Sbjct: 365 IYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTE 416
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query363
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 99.81
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=2.2e-43  Score=326.22  Aligned_cols=356  Identities=20%  Similarity=0.308  Sum_probs=327.3

Q ss_pred             cchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHHH
Q 017945            2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNF   81 (363)
Q Consensus         2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~   81 (363)
                      +++..+.++|++|++|+|+.++..++++.+..+++++..++..+.+++..+++.+++..+.+..|+++..++.++..+..
T Consensus        68 ~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~  147 (460)
T 3mkt_A           68 LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQ  147 (460)
T ss_dssp             HHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999988777788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH-h---cCChhhHHHHHHHHHHHHHHHHHHHHHHhcccc--c-CC
Q 017945           82 PIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK-L---GWGLIGAAITLNLSWWLIVILQLLYIFITKSDG--A-WS  154 (363)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~-~---~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~--~-~~  154 (363)
                      ..++.+|+.||+|.++..++++.++|+++++++++. +   ++|+.|+++|+.+++.+..+...++.++++...  + ++
T Consensus       148 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (460)
T 3mkt_A          148 ALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE  227 (460)
T ss_dssp             HHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSC
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhh
Confidence            999999999999999999999999999999999975 3   699999999999999999998888877663221  1 12


Q ss_pred             CCCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017945          155 GFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNEL  234 (363)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~  234 (363)
                      ++.+.+++..|++++++.|..++++...+....++.+++++|++  ++++|++++++.++...+..+++++..|.+++++
T Consensus       228 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~  305 (460)
T 3mkt_A          228 TFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL  305 (460)
T ss_dssp             CCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23345667899999999999999999999999999999999854  8999999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCc
Q 017945          235 GAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGW  314 (363)
Q Consensus       235 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~  314 (363)
                      |+||.|+.++..+++.+..+.++++.++++.++++++..+|.+|+|+.+.+..++++++++.++++++....+++++.||
T Consensus       306 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~  385 (460)
T 3mkt_A          306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKD  385 (460)
T ss_dssp             HSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGST
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999888999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHhhhHHHHHHHHh----cC-CCchHHHHHHHHHHHHH
Q 017945          315 QSLVAYINLGCYYIVGLPLGILLGFT----FG-FGAEVTYYLSFSLALLV  359 (363)
Q Consensus       315 ~~~~~~~~~~~~~~~~i~~~~~l~~~----~~-~g~~G~~~~~~~~~~l~  359 (363)
                      +|.+++.++.+.|++++|+++++...    ++ +|+.|+|++..++..+.
T Consensus       386 ~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~  435 (460)
T 3mkt_A          386 MTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAA  435 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHH
Confidence            99999999999889999999999987    66 89999999998776654
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00