Citrus Sinensis ID: 017963

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
Protein Sequence
MQPLLEGGEIMDEVSPMPSVSLWDRISNSKTLAWESYKRKPISHWILLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGNSSTPKDSS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHEEccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHcccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccEEEHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mqplleggeimdevspmpsvslwdrisnsktlawesykrkpisHWILLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWpltalillptyfvfktfptpldlkLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIAldsdsdrygnitdrQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVvskdfqgmksEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFgsyiygnsstpkdss
Flexible Loop (DISEMBL)
mqplleggeimdevspmpsvSLWDRISNSKTLAWESYKRKPISHWILLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSyiygnsstpkdss
Low Complexity Region (SEG)
MQPLLEGGEIMDEVSPMPSVSLWDRISNSKTLAWESYKRKPISHWIllvlssaamlvaFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMyayayaylpastaallassslVFSTLFGYFLVKNKLnaaminavviitaamtiiaLDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGNSSTPKDSS
Disordered region (IsUnstruct)
********************SLWDRISNSKTLAWESYKRKPISHWILLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYG*********
Disordered Region (DISOPRED)
*******************************************HWILLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTII*****************IMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYG**S******
Disordered Region (DISEMBL)
MQPLLEGGEIMDEVSPMPSVSLWDRISNSKTLAWESYKRKPISHWILLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGN********
Disordered Region (DISPRO)
**************************************RKPISHWILLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGNSSTPKD**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQPLLEGGEIMDEVSPMPSVSLWDRISNSKTLAWESYKRKPISHWILLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGNSSTPKDSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	363	2.2.26 [Sep-21-2011]
Q9ZUH3	361	Probable purine permease	yes	no	0.931	0.936	0.738	1e-128
O49725	390	Probable purine permease	no	no	0.906	0.843	0.339	5e-48
O49726	390	Probable purine permease	no	no	0.876	0.815	0.331	5e-48
Q9FZ95	351	Purine permease 3 OS=Arab	no	no	0.870	0.900	0.330	1e-47
Q9FZ96	356	Purine permease 1 OS=Arab	no	no	0.820	0.837	0.338	3e-46
Q9LPF6	379	Probable purine permease	no	no	0.876	0.839	0.330	2e-43
Q94GB1	358	Purine permease 2 OS=Arab	no	no	0.867	0.879	0.311	8e-42
Q8RY83	361	Probable purine permease	no	no	0.920	0.925	0.294	2e-41
Q9FLL4	358	Putative purine permease	no	no	0.856	0.868	0.299	2e-36
Q2V3H2	390	Probable purine permease	no	no	0.884	0.823	0.301	1e-35

>sp|Q9ZUH3|PUP5_ARATH Probable purine permease 5 OS=Arabidopsis thaliana GN=PUP5 PE=2 SV=2

 Score =  457 bits (1175), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/340 (73%), Positives = 289/340 (85%), Gaps = 2/340 (0%)

Query: 11  MDEVSPMPSVSLW--DRISNSKTLAWESYKRKPISHWILLVLSSAAMLVAFPASSLLSRV 68
           MDE +  P+VS    + ISN K    E+Y+ KP SHWILL  S AAML+AFPASSLLSR+
Sbjct: 1   MDETTERPTVSFSYSNWISNIKKSTREAYEAKPFSHWILLFFSGAAMLIAFPASSLLSRL 60

Query: 69  YYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADN 128
           Y++NGG SKWIISWVAVAGWP+T LILLPTY   K  PTPL+ KL L+Y+VLGFLSAADN
Sbjct: 61  YFSNGGKSKWIISWVAVAGWPITCLILLPTYIFQKIKPTPLNTKLVLSYVVLGFLSAADN 120

Query: 129 LMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDS 188
           LMYAYAYAYLPAST++LLASSSL FS LFGY +VKN LNA++IN++V+IT AM IIALDS
Sbjct: 121 LMYAYAYAYLPASTSSLLASSSLAFSALFGYLIVKNPLNASVINSIVVITGAMAIIALDS 180

Query: 189 DSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLF 248
            SDRY  I++ QY  GF WDI+GSALHGLIFALSEL+FVKL+GRRSFHV LEQQVMVSL 
Sbjct: 181 SSDRYSYISNSQYFAGFFWDIMGSALHGLIFALSELLFVKLLGRRSFHVALEQQVMVSLT 240

Query: 249 AFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTV 308
           AFAFTTIG+VVS DFQGM  EAK+FKGG + Y  VL+W A+TFQLGVLG TAVLFLASTV
Sbjct: 241 AFAFTTIGMVVSNDFQGMSHEAKSFKGGESLYTQVLVWSAVTFQLGVLGATAVLFLASTV 300

Query: 309 LAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGF 348
           +AG+LNA+RVPITS+AAVIL+HDPMSGFKILSL++TFWGF
Sbjct: 301 MAGVLNAVRVPITSVAAVILMHDPMSGFKILSLVLTFWGF 340

Arabidopsis thaliana (taxid: 3702)

>sp|O49725|PUP10_ARATH Probable purine permease 10 OS=Arabidopsis thaliana GN=PUP10 PE=2 SV=2

 Score =  191 bits (486), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 119/351 (33%), Positives = 205/351 (58%), Gaps = 22/351 (6%)

Query: 15  SPMPSVSLWDRISNSKTLAW----ESYKRKPISHWILLVLSSAAMLVAFPASSLLSRVYY 70
            P P+V   +R S S + A      +YKR     W+ + L +  ++     +++L RVYY
Sbjct: 16  EPNPTVQD-ERNSVSSSQAEVSHSNTYKR-----WLRVTLYTFFVISGQTVATILGRVYY 69

Query: 71  ANGGTSKWIISWVAVAGWPLTALILLPTYFV-FKTFPT-PLDLKLT------LAYIVLGF 122
            NGG SKW+ + V + G+P    +LLP Y + FKT  T   D K T      L Y+VLG 
Sbjct: 70  DNGGNSKWLATVVQLVGFP----VLLPYYILSFKTHATTDRDGKRTSPRNRVLVYVVLGL 125

Query: 123 LSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMT 182
           L  AD  +Y+    YLP ST +L+ +S L F+  F YFL   KL   ++N++ ++T + T
Sbjct: 126 LVGADCYLYSIGLLYLPVSTYSLICASQLAFNAFFSYFLNSQKLTPIILNSLFLLTISST 185

Query: 183 IIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQ 242
           ++A +++      +T  +Y+ GF+  +  SA +GL+ +L +L F+K++ +++F  V++  
Sbjct: 186 LLAFNNEETDSTKVTKGEYVKGFICTVAASAGYGLVLSLQQLAFLKVLKKQNFSEVMDMI 245

Query: 243 VMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVL 302
           + VSL A   + +G+  S +++ + SE   +K G  SY + L+W A+T+Q+  +GGT ++
Sbjct: 246 IYVSLVASCVSVVGLFASSEWKTLSSEMDNYKHGKVSYIMNLVWTAVTWQVFSIGGTGLI 305

Query: 303 FLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIY 353
           F  S++ +  ++ + +P+  I AVI+ HD M+G K++S+I+  WGF SY+Y
Sbjct: 306 FELSSLFSNAISVLGLPVVPILAVIIFHDKMNGLKVISMILAIWGFTSYVY 356

Arabidopsis thaliana (taxid: 3702)

>sp|O49726|PUP9_ARATH Probable purine permease 9 OS=Arabidopsis thaliana GN=PUP9 PE=2 SV=2

 Score =  191 bits (486), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 194/335 (57%), Gaps = 17/335 (5%)

Query: 27  SNSKTLAWESYKRKPISHWILLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVA 86
           S +K     +YKR     W+ + + +  ++     +++L R+YY NGG SKW+ + V + 
Sbjct: 31  SQTKLSHSNTYKR-----WLRVAIYTFFVISGQSVATILGRLYYENGGNSKWLATVVQLV 85

Query: 87  GWPLTALILLPTYFV-FKTFPT-PLDLKLT------LAYIVLGFLSAADNLMYAYAYAYL 138
           G+P    ILLP + +  KT  T   D KLT      L YIVLG L  A   +Y+    YL
Sbjct: 86  GFP----ILLPYHLLSVKTHTTTQRDGKLTSLRNRALVYIVLGLLVGAACYLYSIGLLYL 141

Query: 139 PASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITD 198
           P ST +L+ +S L F+  F Y L   KL   ++N++ ++T + T++A +++      +T 
Sbjct: 142 PVSTLSLICASQLAFTAFFSYLLNSQKLTPIILNSLFLLTISSTLLAFNNEESDSKKVTK 201

Query: 199 RQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVV 258
            +Y+ GFV  +  SA  GL+ +L +L F K++ +++F  V+   + +SL A   + +G+ 
Sbjct: 202 GEYVKGFVCTVGASAGFGLLLSLQQLAFRKVLKKQTFSEVINMIIYMSLVASCVSVVGLF 261

Query: 259 VSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRV 318
            S +++ + SE + +K G  SY + L+W A+T+Q+  +G T ++F  S++ +  ++A+ +
Sbjct: 262 ASSEWKTLSSEMENYKLGKVSYVMNLVWTAVTWQVFSIGCTGLIFELSSLFSNAISALGL 321

Query: 319 PITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIY 353
           P+  I AVI+ HD M+G K++S+I+  WGF SY+Y
Sbjct: 322 PVVPILAVIIFHDKMNGLKVISMILAIWGFVSYVY 356

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ95|PUP3_ARATH Purine permease 3 OS=Arabidopsis thaliana GN=PUP3 PE=2 SV=1

 Score =  190 bits (483), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/324 (33%), Positives = 186/324 (57%), Gaps = 8/324 (2%)

Query: 47  LLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFP 106
           L++++   + +      L+ R+Y+ NGG   W  +++  AG+P+  + LL +Y   +   
Sbjct: 5   LVIINCIILAIGNCGGPLIMRLYFNNGGKRIWFSTFLETAGFPVIFIPLLFSYITRRRSN 64

Query: 107 TPLDL--------KLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFG 158
              D         +L +A +++G LS  DN +YAY  AYLP STAAL+ +S L F  +F 
Sbjct: 65  NVGDSTSFFLIKPRLLIAAVIVGILSGFDNYLYAYGIAYLPVSTAALIIASQLAFIAIFS 124

Query: 159 YFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLI 218
           +F+VK+K     INAVV++T    ++ + +++D+  + T +QYI GF+  +  + ++  I
Sbjct: 125 FFMVKHKFTPFTINAVVLLTVGAAVLGMHTETDKPVHETHKQYITGFLITVAAAVMYAFI 184

Query: 219 FALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVA 278
             L EL + K     S+ +VLE Q+++ L A   + IG+ ++ DF+ +  EA+ FK G A
Sbjct: 185 LPLVELAYQKAKQTMSYTLVLEFQLILCLLASIVSVIGMFIAGDFKALPKEAREFKLGEA 244

Query: 279 SYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKI 338
            +Y+V ++ AI +Q   LG   ++F  S++++GI+ ++ +PIT + AVI  H+     K 
Sbjct: 245 LFYVVAVFSAIIWQGFFLGAIGLIFSTSSLVSGIMISVLLPITEVLAVIFYHEKFQAEKG 304

Query: 339 LSLIVTFWGFGSYIYGNSSTPKDS 362
           LSL ++ WGF SY YG   + +D 
Sbjct: 305 LSLALSLWGFVSYFYGEIKSGEDK 328

May be involved in transport of purine derivatives during pollen germination and tube elongation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ96|PUP1_ARATH Purine permease 1 OS=Arabidopsis thaliana GN=PUP1 PE=1 SV=1

 Score =  186 bits (471), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 179/313 (57%), Gaps = 15/313 (4%)

Query: 64  LLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVF--------------KTFPTPL 109
           LL+R+Y+ NGG   W +S+++ AG+P+  + LL ++                 KT    +
Sbjct: 22  LLTRLYFTNGGKRIWFMSFLSTAGFPIILIPLLVSFLSRRRSNRNPNNAENKRKTKLFLM 81

Query: 110 DLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAA 169
           +  L +A IV+G L+  DN +Y+Y  AYLP ST++L+  + L F+ LF + LVK K    
Sbjct: 82  ETPLFIASIVIGLLTGLDNYLYSYGLAYLPVSTSSLIIGTQLAFNALFAFLLVKQKFTPF 141

Query: 170 MINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKL 229
            INAVV++T  + I+AL SD D+    + ++Y++GF+  ++ + L+  I  L EL + K 
Sbjct: 142 SINAVVLLTVGIGILALHSDGDKPAKESKKEYVVGFLMTVVAALLYAFILPLVELTYKKA 201

Query: 230 VGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFK-GGVASYYLVLIWGA 288
               +F +VLE Q+++ L A  F  IG+ +  DF+ +  EA+ FK GG   YY +++   
Sbjct: 202 RQEITFPLVLEIQMVMCLAATFFCVIGMFIVGDFKVIAREAREFKIGGSVFYYALIVITG 261

Query: 289 ITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGF 348
           I +Q   LG   ++F AS++ +G+L ++ +P+T + AV+   +     K +SL+++ WGF
Sbjct: 262 IIWQGFFLGAIGIVFCASSLASGVLISVLLPVTEVFAVVCFREKFQAEKGVSLLLSLWGF 321

Query: 349 GSYIYGNSSTPKD 361
            SY YG   + K 
Sbjct: 322 VSYFYGEFKSGKK 334

Proton-coupled purine transporter mediating adenine and trans-zeatin uptake. Also able to transport caffeine and adenosine. May be involved in the uptake of cytokinin, caffeine and nicotine from the xylem sap into shoot tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPF6|PUP11_ARATH Probable purine permease 11 OS=Arabidopsis thaliana GN=PUP11 PE=1 SV=1

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 189/321 (58%), Gaps = 3/321 (0%)

Query: 38  KRKPISHWILLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLP 97
           K K    W+L+ ++   ++    AS LL R YY  GG SKW+ + V  A +P+  + LL 
Sbjct: 36  KLKSWQWWVLVSVNIFFLIGGQAASVLLGRFYYDEGGNSKWMATLVQTAAFPILYIPLLL 95

Query: 98  TYFVFKTFPTPLDLKL---TLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFS 154
                    +     L    L Y++LG + A DN++Y+    YL AST +L+ ++ L F+
Sbjct: 96  LPSSASVESSESSCSLKYIVLIYVLLGVIIAGDNMLYSVGLLYLSASTYSLICATQLAFN 155

Query: 155 TLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSAL 214
            +F YF+   K  A ++N+VV+++ +  +IAL+ D+D    ++  +YI+GFV  +  SAL
Sbjct: 156 AVFSYFINAQKFTALILNSVVLLSFSAALIALNDDADTPSGVSRSKYIVGFVCTLAASAL 215

Query: 215 HGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFK 274
           + L+ +L +  F K++ R +F VVLE Q+  SL A   + IG+  S +++ +  E + + 
Sbjct: 216 YSLLLSLMQFSFEKILKRETFSVVLEMQIYTSLVATCVSVIGLFASGEWRTLHGEMEGYH 275

Query: 275 GGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMS 334
            G ASY L L+W A+T+Q+  +G   ++FL +++ + +++ + + +T +AA+++  D MS
Sbjct: 276 KGQASYVLTLVWTAVTWQVCSVGVVGLIFLVTSLFSNVISTLSLAVTPLAALVVFRDKMS 335

Query: 335 GFKILSLIVTFWGFGSYIYGN 355
           G KI+++++  WGF SY+Y N
Sbjct: 336 GVKIMAMLIAIWGFASYVYQN 356

Arabidopsis thaliana (taxid: 3702)

>sp|Q94GB1|PUP2_ARATH Purine permease 2 OS=Arabidopsis thaliana GN=PUP2 PE=1 SV=1

 Score =  171 bits (433), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 184/340 (54%), Gaps = 25/340 (7%)

Query: 46  ILLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVF--- 102
           +L++++   + +      L+ R+Y+ NGG   W  S++   G PL   I  P    F   
Sbjct: 6   VLVIINCIFLAIGNCGGPLMMRLYFQNGGERIWFPSFLQTVGCPL---IFFPLLLSFLRR 62

Query: 103 -----KTFPTPLDL---KLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFS 154
                +   TP  L    L +A IV+G L   DN +Y+Y  AY+P STA+L+ S+ L F+
Sbjct: 63  RRCLEEQETTPFFLMKPPLFIAAIVVGLLVGFDNYLYSYGLAYIPVSTASLIISAQLGFT 122

Query: 155 TLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSAL 214
            LF +F+VK K     INA+V++T    ++AL+SDSD+  N T ++Y++GF+  +  + L
Sbjct: 123 ALFAFFMVKQKFTPFTINAIVLLTGGAVVLALNSDSDKLANETHKEYVVGFIMTLGAALL 182

Query: 215 HGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQ---------- 264
           +G I  L EL + K   R ++ + LE Q+++   A     +G++ + DF+          
Sbjct: 183 YGFILPLVELSYKKSGQRITYTLALEFQMVLCFAATCVCLVGMLAAGDFKVKHALFIFKN 242

Query: 265 -GMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSI 323
             +  EA+ FK G + YY+V+++ AI +Q   +G   ++F AS++++GI+ +  +P+T I
Sbjct: 243 RVIAGEARDFKLGESLYYVVIVFTAIIWQAFFVGAIGLIFCASSLVSGIMVSALLPVTVI 302

Query: 324 AAVILLHDPMSGFKILSLIVTFWGFGSYIYGNSSTPKDSS 363
            AVI   +     K ++L ++ WG  SY YG   + + + 
Sbjct: 303 LAVICFQEKFQAGKGVALALSLWGSVSYFYGQVKSEEKTK 342

Mediates adenine transport. May be involved in the uptake of cytokinin analogs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RY83|PUP13_ARATH Probable purine permease 13 OS=Arabidopsis thaliana GN=PUP13 PE=2 SV=1

 Score =  169 bits (429), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 187/356 (52%), Gaps = 22/356 (6%)

Query: 11  MDEVSPMPSVSLWDRISNSKTLAWESYKRKPISHWILLVLSSAAMLVAFPASSLLSRVYY 70
           MDE   M  +   D  +   ++  +  K K    WIL+ +S   ++ A   + LL R YY
Sbjct: 1   MDEEEAMLLLKEEDEGTRRTSVPTQLMKLKRTHWWILVFISIFFLISAQAIAVLLGRFYY 60

Query: 71  ANGGTSKWIISWVAVAGWPLTALILLPTYFV-----------FKTFPTPLDLKLTLAYIV 119
             GG SKWI + V   G+P+   + LP  F+           FKT        L   Y+ 
Sbjct: 61  NEGGNSKWISTLVQTCGFPI---LYLPLCFLPASHSSSSSCSFKT--------LVWIYLS 109

Query: 120 LGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITA 179
           LGF    DNL+Y++   YL AST ++L SS L F+ +F Y++   K+   ++ +V+ ++ 
Sbjct: 110 LGFAIGLDNLLYSFGLLYLSASTYSILCSSQLAFNGVFSYYINSQKITCLILFSVLFLSV 169

Query: 180 AMTIIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVL 239
           +  +++LD DS+     +   Y++G +  +  S ++ L  +L +  F  ++   +F +VL
Sbjct: 170 SAVLVSLDDDSNSPSGDSKWSYLIGCLCTVFASLIYSLQLSLMQFSFENVLKSETFSMVL 229

Query: 240 EQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGT 299
           E Q+  SL A     IG+  S ++  +  E + F  G   Y L L+  A+++QLG +G  
Sbjct: 230 EMQIYTSLVASCVAVIGLFASGEWMLLSVEMEEFHEGQVIYVLTLVGTAVSWQLGSVGAV 289

Query: 300 AVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGN 355
           A++FL S++ + ++  + + +T +AA+ + HD ++  K++++++ F GFG YIY N
Sbjct: 290 ALIFLVSSLFSNLIGTLSLIVTPLAAIAVFHDKLTEVKMVAMLIAFMGFGFYIYQN 345

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLL4|PUP12_ARATH Putative purine permease 12 OS=Arabidopsis thaliana GN=PUP12 PE=3 SV=1

 Score =  153 bits (386), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 169/314 (53%), Gaps = 3/314 (0%)

Query: 45  WILLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLT--ALILLPTYFVF 102
           WIL+ +S   ++ A   S LL R YY  GG SKWI + V   G+P+    L LLP     
Sbjct: 29  WILVFISIFFLISAQAISVLLGRFYYNEGGNSKWISTLVQTGGFPILYLPLSLLPASQSS 88

Query: 103 KTFPTPLDLK-LTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFL 161
            +  +    K L   Y+ LGF    DN +Y+    YL AST ++L +S L F+ +F Y++
Sbjct: 89  SSSSSSSSFKTLVWIYLSLGFAIGLDNFLYSVGLLYLSASTYSILCASQLAFNGVFYYYI 148

Query: 162 VKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFAL 221
              K+   +  +V+ ++ +  +++LD DS+     +   Y++G    +  S ++ L  +L
Sbjct: 149 NSQKITCLIFFSVLFLSISAVLVSLDDDSNSPSGDSKWSYLIGCFCAVFASLIYSLQLSL 208

Query: 222 SELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYY 281
            +  F K++   +  +VLE Q+  SL A     IG+  S ++  +  E + F+ G   Y 
Sbjct: 209 MQFSFEKVLKSETLSMVLEMQIYTSLVASCVAVIGLFASGEWMLLSVEMEEFQEGQVIYV 268

Query: 282 LVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSL 341
           L L+  A++ QLG +G  +++FL S++ + +++ + + +T +AA+ + HD ++  K++++
Sbjct: 269 LTLVGAAVSCQLGCVGAVSLIFLVSSLFSNLISTLSLIVTPLAAIAVFHDKLTEVKMVAM 328

Query: 342 IVTFWGFGSYIYGN 355
            + F GF  YIY N
Sbjct: 329 PIAFTGFTFYIYQN 342

Arabidopsis thaliana (taxid: 3702)

>sp|Q2V3H2|PUP7_ARATH Probable purine permease 7 OS=Arabidopsis thaliana GN=PUP7 PE=2 SV=1

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 185/338 (54%), Gaps = 17/338 (5%)

Query: 27  SNSKTLAWESYKRKPISHWILLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVA 86
           S+S     E+YKR     W+ + +    +L   P +++L R+YY NGG S ++++ + + 
Sbjct: 29  SSSAVPQTENYKR-----WLRVSIYVIFVLFCQPLATILGRLYYENGGNSTYVVTLLQLI 83

Query: 87  GWPLTALILLPTYFVFKTFPTPLDLKL-------TLA--YIVLGFLSAADNLMYAYAYAY 137
           G+P+   ++L  +F     P   D          TLA  Y+  G L +A   + A    Y
Sbjct: 84  GFPV---LVLFRFFSRIRQPKSTDTNFSQSPSFTTLASVYLCTGLLVSAYAYLSAVGLLY 140

Query: 138 LPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNIT 197
           LP ST +L+ +S L F+  F YFL   K    ++++++++T +  ++ +++DS+   N++
Sbjct: 141 LPVSTFSLILASQLAFTAFFSYFLNSQKFTPLIVSSLLLLTVSSALLVVNTDSENSTNVS 200

Query: 198 DRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGV 257
             QY++GF+  I  SA  GL+ +L +++F K+  + +   V +  +  SL A     IG+
Sbjct: 201 RVQYVIGFICTIGASAGIGLLLSLIQMLFRKVFTKHTSSAVTDLAIYQSLVASCVVLIGL 260

Query: 258 VVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIR 317
             S +++ + SE + +K G  SY L L   AI++Q+  LG   ++F +S+V +  + A+ 
Sbjct: 261 FASGEWETLPSEMRNYKLGKVSYVLTLASAAISWQVYTLGLVGLIFESSSVFSNSITAVG 320

Query: 318 VPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGN 355
           +PI  +AAVI+ HD M   KI S+I+   GF S++Y +
Sbjct: 321 LPIVPVAAVIVFHDRMDASKIFSIILAICGFLSFVYQH 358

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
225467486	354	PREDICTED: probable purine permease 5-li	0.969	0.994	0.832	1e-155
224091763	367	predicted protein [Populus trichocarpa]	0.969	0.959	0.789	1e-153
255576981	354	purine transporter, putative [Ricinus co	0.964	0.988	0.812	1e-150
356545419	363	PREDICTED: probable purine permease 5-li	0.988	0.988	0.763	1e-148
356516979	361	PREDICTED: probable purine permease 5-li	0.972	0.977	0.774	1e-141
449453976	364	PREDICTED: probable purine permease 5-li	0.953	0.950	0.739	1e-134
296090570	317	unnamed protein product [Vitis vinifera]	0.867	0.993	0.752	1e-132
297821705	378	ATPUP5 [Arabidopsis lyrata subsp. lyrata	0.933	0.896	0.739	1e-127
145360271	361	purine permease 5 [Arabidopsis thaliana]	0.931	0.936	0.738	1e-126
218202614	388	hypothetical protein OsI_32358 [Oryza sa	0.906	0.847	0.703	1e-123

>gi|225467486|ref|XP_002266479.1| PREDICTED: probable purine permease 5-like [Vitis vinifera]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 293/352 (83%), Positives = 322/352 (91%)

Query: 11  MDEVSPMPSVSLWDRISNSKTLAWESYKRKPISHWILLVLSSAAMLVAFPASSLLSRVYY 70
           M+E  P PSV LW+R SN  T AWE+YKRKP S+W+LL+LSS AMLVAFPASS+LSR+YY
Sbjct: 1   MEEALPRPSVPLWERFSNFWTSAWETYKRKPTSYWVLLILSSGAMLVAFPASSILSRLYY 60

Query: 71  ANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLM 130
            NGG SKWIISWVAVAGWPLTAL+L+PTY  FKT PTPL+LKL ++YIVLGFLSAADNLM
Sbjct: 61  DNGGKSKWIISWVAVAGWPLTALMLVPTYLYFKTSPTPLNLKLVMSYIVLGFLSAADNLM 120

Query: 131 YAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDS 190
           YAYAYAYLPASTA+LLASSSLVFS LFGYFLV NKLNAA INAVVIITAA+TIIALDSDS
Sbjct: 121 YAYAYAYLPASTASLLASSSLVFSALFGYFLVNNKLNAATINAVVIITAAVTIIALDSDS 180

Query: 191 DRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAF 250
           DRY N++D QYIMGF+WDILGSALHGLIFALSELVFVKL+GR SFHVVLEQQVMVSLFAF
Sbjct: 181 DRYDNVSDSQYIMGFIWDILGSALHGLIFALSELVFVKLLGRISFHVVLEQQVMVSLFAF 240

Query: 251 AFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLA 310
            FTT+GV+V KDFQGM SEA++FKGG ASYYLVLIWGAITFQLGVLGGTAVL+L+STVLA
Sbjct: 241 IFTTVGVIVEKDFQGMASEARSFKGGKASYYLVLIWGAITFQLGVLGGTAVLYLSSTVLA 300

Query: 311 GILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGNSSTPKDS 362
           G+LNAIRVP+TSIAAVILLHDPMS FKILSLI+TFWGFG YIYGNS+  KDS
Sbjct: 301 GVLNAIRVPLTSIAAVILLHDPMSSFKILSLIITFWGFGYYIYGNSAVSKDS 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091763|ref|XP_002309345.1| predicted protein [Populus trichocarpa] gi|222855321|gb|EEE92868.1| predicted protein [Populus trichocarpa]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 278/352 (78%), Positives = 309/352 (87%)

Query: 4   LLEGGEIMDEVSPMPSVSLWDRISNSKTLAWESYKRKPISHWILLVLSSAAMLVAFPASS 63
           LL+   IM+E S  PS SLWD+I N K +  E YKRKPISHWILL LS  AMLVAFPASS
Sbjct: 6   LLQSETIMEEGSSKPSNSLWDKIRNLKHITMEGYKRKPISHWILLALSIVAMLVAFPASS 65

Query: 64  LLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFL 123
           LL+RVYY+NGG SKWIISWVAVAGWPLTALIL P+YF     PTPL  KL ++YIVLGFL
Sbjct: 66  LLTRVYYSNGGASKWIISWVAVAGWPLTALILFPSYFFLDNSPTPLTFKLLVSYIVLGFL 125

Query: 124 SAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTI 183
           SAADNLMYAYAYAYLPASTAALLASSSLVFS L GYF+V NKLNA+M+NA+VIITAAM +
Sbjct: 126 SAADNLMYAYAYAYLPASTAALLASSSLVFSALCGYFIVHNKLNASMVNAIVIITAAMAM 185

Query: 184 IALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQV 243
           IALDSDSDRY  +TD QY MGF+WDILGSALHGLIFALSELVFVKL+GRRSFHVVLEQQV
Sbjct: 186 IALDSDSDRYDYVTDHQYTMGFIWDILGSALHGLIFALSELVFVKLMGRRSFHVVLEQQV 245

Query: 244 MVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLF 303
           MVS F F FTTIGV+++ DF+GM SEA++FKGG +SY LVL+WG ITFQLGVLGGTAVL+
Sbjct: 246 MVSFFGFVFTTIGVILNNDFEGMASEARSFKGGKSSYILVLVWGTITFQLGVLGGTAVLY 305

Query: 304 LASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGN 355
           LASTV+AG+LNAIRVPIT+IAAVILLHDPMSGFKILSL++TFWGF SYIYGN
Sbjct: 306 LASTVMAGVLNAIRVPITAIAAVILLHDPMSGFKILSLLITFWGFTSYIYGN 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576981|ref|XP_002529375.1| purine transporter, putative [Ricinus communis] gi|223531123|gb|EEF32971.1| purine transporter, putative [Ricinus communis]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 286/352 (81%), Positives = 318/352 (90%), Gaps = 2/352 (0%)

Query: 11  MDE--VSPMPSVSLWDRISNSKTLAWESYKRKPISHWILLVLSSAAMLVAFPASSLLSRV 68
           MDE    P  S SLW++IS  KTLA E+YK+KP+SHWILL+LSSAAML+AFPASSLLSRV
Sbjct: 1   MDEEPAEPSNSFSLWEKISIWKTLALEAYKKKPMSHWILLLLSSAAMLIAFPASSLLSRV 60

Query: 69  YYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADN 128
           YYANGGTSKWIISWVAVAGWPLTAL+LLPTYF  KTFPT L  KL +AYIVLGFLSAADN
Sbjct: 61  YYANGGTSKWIISWVAVAGWPLTALVLLPTYFFCKTFPTRLSSKLIVAYIVLGFLSAADN 120

Query: 129 LMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDS 188
           LMYAYAYAYLPAST+AL+ASSSLVFS LFGY +V NKLNA+MINA+VIITA M IIALDS
Sbjct: 121 LMYAYAYAYLPASTSALVASSSLVFSALFGYLIVNNKLNASMINAIVIITAGMVIIALDS 180

Query: 189 DSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLF 248
           DSDRY  ++DRQYIMGF+WDILGSALHGLIFALSELVFVKL+GRRSFHVVLEQQVMVSLF
Sbjct: 181 DSDRYDYVSDRQYIMGFIWDILGSALHGLIFALSELVFVKLLGRRSFHVVLEQQVMVSLF 240

Query: 249 AFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTV 308
            F FTTIG++V++DF GMKSEA+TF GG  SY LVL+WGAITFQLGVLGGTAVL+LASTV
Sbjct: 241 GFIFTTIGIIVNRDFHGMKSEAETFVGGETSYILVLVWGAITFQLGVLGGTAVLYLASTV 300

Query: 309 LAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGNSSTPK 360
           +AG+LNA+RVP+TS+AAVILLHDPMSGFKILSLIVTFWG  SYIYG+S + K
Sbjct: 301 VAGVLNAVRVPLTSVAAVILLHDPMSGFKILSLIVTFWGCVSYIYGSSDSIK 352

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545419|ref|XP_003541140.1| PREDICTED: probable purine permease 5-like [Glycine max]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 275/360 (76%), Positives = 317/360 (88%), Gaps = 1/360 (0%)

Query: 3   PLLEGGEIMDEVSPMPSVSLWDRISNSKTLAWESYKRKPISHWILLVLSSAAMLVAFPAS 62
           PL++  E M+    +PS SL  +IS   T+  E++KRKPI +WILLVLS  AMLVAFPAS
Sbjct: 5   PLIQP-ESMEAEPSIPSDSLRAQISKFSTMLTEAHKRKPIHYWILLVLSILAMLVAFPAS 63

Query: 63  SLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGF 122
           S+LSRVYY NGG SKWIISWVAVAGWPLTALIL P YF+ KTFPTPL+LKL+L+YIVLGF
Sbjct: 64  SILSRVYYDNGGQSKWIISWVAVAGWPLTALILFPVYFISKTFPTPLNLKLSLSYIVLGF 123

Query: 123 LSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMT 182
           LSAADNLMYAYAYAYLPASTA+L+ASSSLVFS LFGYFLVKNK+NA+++N+V +ITAA+T
Sbjct: 124 LSAADNLMYAYAYAYLPASTASLVASSSLVFSALFGYFLVKNKVNASIVNSVFVITAALT 183

Query: 183 IIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQ 242
           IIALDS SDRY +I+D +YIMGFVWD+LGSA HGLIFALSELVFVKL+GRRSF VVLEQQ
Sbjct: 184 IIALDSSSDRYPSISDSEYIMGFVWDVLGSAFHGLIFALSELVFVKLLGRRSFIVVLEQQ 243

Query: 243 VMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVL 302
           VMVSLFAF FTT+G++VS DFQGM  EA TF+GG ++YYLV+IWGAITFQLGVLGGTA++
Sbjct: 244 VMVSLFAFLFTTVGMIVSGDFQGMAHEATTFEGGRSAYYLVIIWGAITFQLGVLGGTAII 303

Query: 303 FLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGNSSTPKDS 362
           FL STVLAG+LNA+R PITSIAAVILL DPMSGFKILSL++TFWGFGSYIYG+S   K S
Sbjct: 304 FLGSTVLAGVLNAVRTPITSIAAVILLKDPMSGFKILSLVITFWGFGSYIYGSSMGEKSS 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516979|ref|XP_003527168.1| PREDICTED: probable purine permease 5-like [Glycine max]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 274/354 (77%), Positives = 312/354 (88%), Gaps = 1/354 (0%)

Query: 3   PLLEGGEIMDEVSPMPSVSLWDRISNSKTLAWESYKRKPISHWILLVLSSAAMLVAFPAS 62
           PLL+  EIM+    +PS SL  +IS   T+  ++YKRK I +WILL LS  AMLVAFPAS
Sbjct: 5   PLLQP-EIMEAEPSIPSDSLRSQISKFSTMLTKAYKRKSIHYWILLALSILAMLVAFPAS 63

Query: 63  SLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGF 122
           S+LSRVYY NGG SKWIISWVAVAGWPLTALIL P YF+ KTFPT L+LKL+L+YIVLGF
Sbjct: 64  SILSRVYYDNGGQSKWIISWVAVAGWPLTALILFPVYFISKTFPTSLNLKLSLSYIVLGF 123

Query: 123 LSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMT 182
           LSAADNLMYAYAYAYLPASTA+L+ASSSLVFS LFGYFLVKNK+NA+++N+V IIT A+T
Sbjct: 124 LSAADNLMYAYAYAYLPASTASLVASSSLVFSALFGYFLVKNKVNASIVNSVFIITIALT 183

Query: 183 IIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQ 242
           IIALDS SDRY NI+D +YIMGFVWD+LGSALHGLIFALSELVFVKL+ RRSF VVLEQQ
Sbjct: 184 IIALDSSSDRYANISDSEYIMGFVWDVLGSALHGLIFALSELVFVKLLERRSFIVVLEQQ 243

Query: 243 VMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVL 302
           VMVSLFAF FTT+G+++S DFQGM  EA TFKGG ++YYLV+IWGAITFQLGVLGGTAV+
Sbjct: 244 VMVSLFAFLFTTVGMIMSGDFQGMAHEATTFKGGRSAYYLVIIWGAITFQLGVLGGTAVI 303

Query: 303 FLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGNS 356
           FL STVLAG+LNA+R PITSIAAVILL DPMSGFKILSL++TFWGFGSYIYG+S
Sbjct: 304 FLGSTVLAGVLNAVRTPITSIAAVILLKDPMSGFKILSLVITFWGFGSYIYGSS 357

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453976|ref|XP_004144732.1| PREDICTED: probable purine permease 5-like [Cucumis sativus] gi|449490778|ref|XP_004158704.1| PREDICTED: probable purine permease 5-like [Cucumis sativus]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 256/346 (73%), Positives = 298/346 (86%)

Query: 9   EIMDEVSPMPSVSLWDRISNSKTLAWESYKRKPISHWILLVLSSAAMLVAFPASSLLSRV 68
           +IM++       SLW +IS  +  A E+Y+RKPISHWILL LSS AMLVAFPASS+LSRV
Sbjct: 11  DIMEQTPQESPTSLWKQISTIRQTALEAYRRKPISHWILLALSSVAMLVAFPASSILSRV 70

Query: 69  YYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADN 128
           YY NGG SKWIISWV+V GWP+ AL+L P YF+ +  PTPL+ KL ++YIVLGFLSAADN
Sbjct: 71  YYDNGGKSKWIISWVSVVGWPIPALLLFPMYFLSEIRPTPLNWKLIISYIVLGFLSAADN 130

Query: 129 LMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDS 188
           LMYAYAYAYLPASTA+LLASSSLVFS LFGY L KN++NA+++NAV IITAA+ +I LDS
Sbjct: 131 LMYAYAYAYLPASTASLLASSSLVFSVLFGYLLAKNQVNASILNAVFIITAAVVMIGLDS 190

Query: 189 DSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLF 248
           +SDRYG ITDRQYI+GFVWDILGSALHGLIFALSELVF+KL+ R+SFHVVLEQQVMVS F
Sbjct: 191 NSDRYGGITDRQYILGFVWDILGSALHGLIFALSELVFIKLLDRKSFHVVLEQQVMVSFF 250

Query: 249 AFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTV 308
            F FTT+GV+++ DFQ MKSEA +F GG +SY LVLIW AI+FQLGVLGGTAVLFL+ST+
Sbjct: 251 GFLFTTLGVLLNNDFQNMKSEAASFVGGTSSYLLVLIWSAISFQLGVLGGTAVLFLSSTI 310

Query: 309 LAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYG 354
           LAG+LNA+RVPITSI AVI L DPMSGFKILSL++TFWGF SYIYG
Sbjct: 311 LAGVLNAVRVPITSIGAVIFLKDPMSGFKILSLVITFWGFSSYIYG 356

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090570|emb|CBI40933.3| unnamed protein product [Vitis vinifera]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 265/352 (75%), Positives = 289/352 (82%), Gaps = 37/352 (10%)

Query: 11  MDEVSPMPSVSLWDRISNSKTLAWESYKRKPISHWILLVLSSAAMLVAFPASSLLSRVYY 70
           M+E  P PSV LW+R SN  T AWE+YKRKP S+W+LL+LSS AMLVAFPASS+LSR+YY
Sbjct: 1   MEEALPRPSVPLWERFSNFWTSAWETYKRKPTSYWVLLILSSGAMLVAFPASSILSRLYY 60

Query: 71  ANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLM 130
            NGG SKWIISWVAVAG                                     AADNLM
Sbjct: 61  DNGGKSKWIISWVAVAG-------------------------------------AADNLM 83

Query: 131 YAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDS 190
           YAYAYAYLPASTA+LLASSSLVFS LFGYFLV NKLNAA INAVVIITAA+TIIALDSDS
Sbjct: 84  YAYAYAYLPASTASLLASSSLVFSALFGYFLVNNKLNAATINAVVIITAAVTIIALDSDS 143

Query: 191 DRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAF 250
           DRY N++D QYIMGF+WDILGSALHGLIFALSELVFVKL+GR SFHVVLEQQVMVSLFAF
Sbjct: 144 DRYDNVSDSQYIMGFIWDILGSALHGLIFALSELVFVKLLGRISFHVVLEQQVMVSLFAF 203

Query: 251 AFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLA 310
            FTT+GV+V KDFQGM SEA++FKGG ASYYLVLIWGAITFQLGVLGGTAVL+L+STVLA
Sbjct: 204 IFTTVGVIVEKDFQGMASEARSFKGGKASYYLVLIWGAITFQLGVLGGTAVLYLSSTVLA 263

Query: 311 GILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGNSSTPKDS 362
           G+LNAIRVP+TSIAAVILLHDPMS FKILSLI+TFWGFG YIYGNS+  KDS
Sbjct: 264 GVLNAIRVPLTSIAAVILLHDPMSSFKILSLIITFWGFGYYIYGNSAVSKDS 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821705|ref|XP_002878735.1| ATPUP5 [Arabidopsis lyrata subsp. lyrata] gi|297324574|gb|EFH54994.1| ATPUP5 [Arabidopsis lyrata subsp. lyrata]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/341 (73%), Positives = 291/341 (85%), Gaps = 2/341 (0%)

Query: 10  IMDEVSPMPSVSLW--DRISNSKTLAWESYKRKPISHWILLVLSSAAMLVAFPASSLLSR 67
           +MDE +  PSVS    + +SN K    E+Y+ KP SHWILL+ S AAML+AFPASSLLSR
Sbjct: 18  LMDETTERPSVSFSYSNWMSNVKKSTREAYEAKPFSHWILLLFSGAAMLIAFPASSLLSR 77

Query: 68  VYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAAD 127
           +Y++NGG SKWIISWVAVAGWP+T LILLPTY   K  PTPL+ KL L+Y+VLGFLSAAD
Sbjct: 78  LYFSNGGKSKWIISWVAVAGWPITCLILLPTYIFQKIKPTPLNAKLVLSYVVLGFLSAAD 137

Query: 128 NLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALD 187
           NLMYAYAYAYLPAST++LLASSSL FS LFGY +VKN LNA++IN++VIIT AM IIALD
Sbjct: 138 NLMYAYAYAYLPASTSSLLASSSLAFSALFGYLIVKNPLNASVINSIVIITGAMAIIALD 197

Query: 188 SDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSL 247
           S SDRY  I++ QY  GF WDI+GSALHGLIFALSEL+FVKL+GRRSFHV LEQQVMVSL
Sbjct: 198 SSSDRYSYISNSQYFAGFFWDIMGSALHGLIFALSELLFVKLLGRRSFHVALEQQVMVSL 257

Query: 248 FAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLAST 307
            AFAFTT+G+VVS DFQGM  EAK+FKGG + Y  VL+W A+TFQLGVLG TAVLFLAST
Sbjct: 258 IAFAFTTLGMVVSNDFQGMSQEAKSFKGGESLYTQVLVWSAVTFQLGVLGATAVLFLAST 317

Query: 308 VLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGF 348
           V+AG+LNA+RVPITSIAAVIL+HDPMSGFKILSL++TFWGF
Sbjct: 318 VMAGVLNAVRVPITSIAAVILMHDPMSGFKILSLVLTFWGF 358

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145360271|ref|NP_179999.2| purine permease 5 [Arabidopsis thaliana] gi|334184405|ref|NP_001189588.1| purine permease 5 [Arabidopsis thaliana] gi|167012001|sp|Q9ZUH3.2|PUP5_ARATH RecName: Full=Probable purine permease 5; Short=AtPUP5 gi|330252450|gb|AEC07544.1| purine permease 5 [Arabidopsis thaliana] gi|330252451|gb|AEC07545.1| purine permease 5 [Arabidopsis thaliana]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/340 (73%), Positives = 289/340 (85%), Gaps = 2/340 (0%)

Query: 11  MDEVSPMPSVSLW--DRISNSKTLAWESYKRKPISHWILLVLSSAAMLVAFPASSLLSRV 68
           MDE +  P+VS    + ISN K    E+Y+ KP SHWILL  S AAML+AFPASSLLSR+
Sbjct: 1   MDETTERPTVSFSYSNWISNIKKSTREAYEAKPFSHWILLFFSGAAMLIAFPASSLLSRL 60

Query: 69  YYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADN 128
           Y++NGG SKWIISWVAVAGWP+T LILLPTY   K  PTPL+ KL L+Y+VLGFLSAADN
Sbjct: 61  YFSNGGKSKWIISWVAVAGWPITCLILLPTYIFQKIKPTPLNTKLVLSYVVLGFLSAADN 120

Query: 129 LMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDS 188
           LMYAYAYAYLPAST++LLASSSL FS LFGY +VKN LNA++IN++V+IT AM IIALDS
Sbjct: 121 LMYAYAYAYLPASTSSLLASSSLAFSALFGYLIVKNPLNASVINSIVVITGAMAIIALDS 180

Query: 189 DSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLF 248
            SDRY  I++ QY  GF WDI+GSALHGLIFALSEL+FVKL+GRRSFHV LEQQVMVSL 
Sbjct: 181 SSDRYSYISNSQYFAGFFWDIMGSALHGLIFALSELLFVKLLGRRSFHVALEQQVMVSLT 240

Query: 249 AFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTV 308
           AFAFTTIG+VVS DFQGM  EAK+FKGG + Y  VL+W A+TFQLGVLG TAVLFLASTV
Sbjct: 241 AFAFTTIGMVVSNDFQGMSHEAKSFKGGESLYTQVLVWSAVTFQLGVLGATAVLFLASTV 300

Query: 309 LAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGF 348
           +AG+LNA+RVPITS+AAVIL+HDPMSGFKILSL++TFWGF
Sbjct: 301 MAGVLNAVRVPITSVAAVILMHDPMSGFKILSLVLTFWGF 340

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218202614|gb|EEC85041.1| hypothetical protein OsI_32358 [Oryza sativa Indica Group]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/330 (70%), Positives = 272/330 (82%), Gaps = 1/330 (0%)

Query: 35  ESYKRKPISHWILLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALI 94
           E+Y+ KP+S W+LLVLS+ AML AFPASSLLSR+YY NGG SKWI+SW AVAGWPL AL+
Sbjct: 58  ETYRSKPMSFWLLLVLSAGAMLTAFPASSLLSRLYYNNGGQSKWILSWSAVAGWPLPALL 117

Query: 95  LLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFS 154
           LLP Y   K  PTPL  KL   Y +LG LSAADNLMYA+AYAYLPASTA+L+A+SSL FS
Sbjct: 118 LLPCYLAGKAAPTPLSPKLCAWYALLGLLSAADNLMYAWAYAYLPASTASLVAASSLAFS 177

Query: 155 TLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSAL 214
            LFG  +VKN+L  + +NAVV+ITA + IIALDS SDRY  IT RQY +G VWD+LGSAL
Sbjct: 178 ALFGCAIVKNRLRLSSLNAVVVITAGVVIIALDSGSDRYPGITGRQYALGLVWDVLGSAL 237

Query: 215 HGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVS-KDFQGMKSEAKTF 273
           HGLIFALSELVFV+++GRRSFHVVLEQQ MVSL AFAFTT+G+ VS   F  M+ EA  F
Sbjct: 238 HGLIFALSELVFVRVLGRRSFHVVLEQQAMVSLCAFAFTTVGLAVSGGGFPAMRREAAAF 297

Query: 274 KGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPM 333
           + G ASY +V++W A+TFQLGVLGGT VLFLASTVLAG+LNA+RVP+TSIAAVI  HDPM
Sbjct: 298 RHGEASYAMVMVWSAVTFQLGVLGGTGVLFLASTVLAGVLNAVRVPVTSIAAVIWFHDPM 357

Query: 334 SGFKILSLIVTFWGFGSYIYGNSSTPKDSS 363
           SGFKILSL++T WGFGSY+ G+SST K S+
Sbjct: 358 SGFKILSLLITVWGFGSYMVGHSSTKKAST 387

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
TAIR|locus:2047520	361	PUP5 "AT2G24220" [Arabidopsis	0.953	0.958	0.625	9.7e-112
TAIR|locus:2194814	379	PUP11 "AT1G44750" [Arabidopsis	0.876	0.839	0.292	4.5e-43
TAIR|locus:2141907	390	PUP10 "AT4G18210" [Arabidopsis	0.914	0.851	0.297	1.9e-42
TAIR|locus:2032159	351	PUP3 "AT1G28220" [Arabidopsis	0.820	0.849	0.284	5.1e-35
TAIR|locus:2032148	356	PUP1 "AT1G28230" [Arabidopsis	0.818	0.834	0.282	3.2e-33
TAIR|locus:2138203	361	ATPUP13 "AT4G08700" [Arabidops	0.942	0.947	0.255	4.1e-33
TAIR|locus:1009023376	394	PUP8 "AT4G18195" [Arabidopsis	0.798	0.736	0.283	6.9e-31
TAIR|locus:1009023365	377	AT4G18205 "AT4G18205" [Arabido	0.903	0.870	0.257	8.8e-31
TAIR|locus:1009023346	390	PUP7 "AT4G18197" [Arabidopsis	0.887	0.825	0.267	8.8e-31
TAIR|locus:2163026	358	PUP12 "AT5G41160" [Arabidopsis	0.856	0.868	0.257	2.3e-30

TAIR|locus:2047520 PUP5 "AT2G24220" [Arabidopsis thaliana (taxid:3702)]

 Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
 Identities = 220/352 (62%), Positives = 251/352 (71%)

Query:    11 MDEVSPMPSVSL----WDRISNSKTLAWESYKRKPISHWIXXXXXXXXXXXXFPASSLLS 66
             MDE +  P+VS     W  ISN K    E+Y+ KP SHWI            FPASSLLS
Sbjct:     1 MDETTERPTVSFSYSNW--ISNIKKSTREAYEAKPFSHWILLFFSGAAMLIAFPASSLLS 58

Query:    67 RVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAA 126
             R+Y++NGG SKWIISWVAVAGWP+T LILLPTY   K  PTPL+ KL L+Y+VLGFLSAA
Sbjct:    59 RLYFSNGGKSKWIISWVAVAGWPITCLILLPTYIFQKIKPTPLNTKLVLSYVVLGFLSAA 118

Query:   127 DNLMXXXXXXXXXXXXXXXXXXXXXVFSTLFGYFLVKNKLXXXXXXXXXXXXXXXXXXXL 186
             DNLM                      FS LFGY +VKN L                   L
Sbjct:   119 DNLMYAYAYAYLPASTSSLLASSSLAFSALFGYLIVKNPLNASVINSIVVITGAMAIIAL 178

Query:   187 DSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVS 246
             DS SDRY  I++ QY  GF WDI+GSALHGLIFALSEL+FVKL+GRRSFHV LEQQVMVS
Sbjct:   179 DSSSDRYSYISNSQYFAGFFWDIMGSALHGLIFALSELLFVKLLGRRSFHVALEQQVMVS 238

Query:   247 LFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLAS 306
             L AFAFTTIG+VVS DFQGM  EAK+FKGG + Y  VL+W A+TFQLGVLG TAVLFLAS
Sbjct:   239 LTAFAFTTIGMVVSNDFQGMSHEAKSFKGGESLYTQVLVWSAVTFQLGVLGATAVLFLAS 298

Query:   307 TVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGNSST 358
             TV+AG+LNA+RVPITS+AAVIL+HDPMSGFKILSL++TFWGF SYIYG+SS+
Sbjct:   299 TVMAGVLNAVRVPITSVAAVILMHDPMSGFKILSLVLTFWGFSSYIYGSSSS 350

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=ISS;TAS

GO:0015931 "nucleobase-containing compound transport" evidence=ISS;TAS

GO:0016020 "membrane" evidence=IEA;TAS

GO:0006863 "purine nucleobase transport" evidence=RCA;TAS

TAIR|locus:2194814 PUP11 "AT1G44750" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 94/321 (29%), Positives = 163/321 (50%)

Query:    38 KRKPISHWIXXXXXXXXXXXXFPASSLLSRVYYANGGTSKWIISWVAVAGWPLT--ALIL 95
             K K    W+              AS LL R YY  GG SKW+ + V  A +P+    L+L
Sbjct:    36 KLKSWQWWVLVSVNIFFLIGGQAASVLLGRFYYDEGGNSKWMATLVQTAAFPILYIPLLL 95

Query:    96 LPTYFVFKTFPTPLDLK-LTLAYIVLGFLSAADNLMXXXXXXXXXXXXXXXXXXXXXVFS 154
             LP+    ++  +   LK + L Y++LG + A DN++                      F+
Sbjct:    96 LPSSASVESSESSCSLKYIVLIYVLLGVIIAGDNMLYSVGLLYLSASTYSLICATQLAFN 155

Query:   155 TLFGYFLVKNKLXXXXXXXXXXXXXXXXXXXLDSDSDRYGNITDRQYIMGFVWDILGSAL 214
              +F YF+   K                    L+ D+D    ++  +YI+GFV  +  SAL
Sbjct:   156 AVFSYFINAQKFTALILNSVVLLSFSAALIALNDDADTPSGVSRSKYIVGFVCTLAASAL 215

Query:   215 HGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFK 274
             + L+ +L +  F K++ R +F VVLE Q+  SL A   + IG+  S +++ +  E + + 
Sbjct:   216 YSLLLSLMQFSFEKILKRETFSVVLEMQIYTSLVATCVSVIGLFASGEWRTLHGEMEGYH 275

Query:   275 GGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMS 334
              G ASY L L+W A+T+Q+  +G   ++FL +++ + +++ + + +T +AA+++  D MS
Sbjct:   276 KGQASYVLTLVWTAVTWQVCSVGVVGLIFLVTSLFSNVISTLSLAVTPLAALVVFRDKMS 335

Query:   335 GFKILSLIVTFWGFGSYIYGN 355
             G KI+++++  WGF SY+Y N
Sbjct:   336 GVKIMAMLIAIWGFASYVYQN 356

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=ISS;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0015931 "nucleobase-containing compound transport" evidence=ISS;TAS

GO:0006863 "purine nucleobase transport" evidence=RCA;TAS

GO:0016020 "membrane" evidence=TAS

TAIR|locus:2141907 PUP10 "AT4G18210" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 103/346 (29%), Positives = 172/346 (49%)

Query:    16 PMPSVSLWDRISNSKTLAWESYKRKPISHWIXXXXXXXXXXXXFPASSLLSRVYYANGGT 75
             P P+V   +R S S + A  S+       W+               +++L RVYY NGG 
Sbjct:    17 PNPTVQD-ERNSVSSSQAEVSHSNT-YKRWLRVTLYTFFVISGQTVATILGRVYYDNGGN 74

Query:    76 SKWIISWVAVAGWPLTALILLPTYFV-FKTFPTP-LDLKLT------LAYIVLGFLSAAD 127
             SKW+ + V + G+P    +LLP Y + FKT  T   D K T      L Y+VLG L  AD
Sbjct:    75 SKWLATVVQLVGFP----VLLPYYILSFKTHATTDRDGKRTSPRNRVLVYVVLGLLVGAD 130

Query:   128 NLMXXXXXXXXXXXXXXXXXXXXXVFSTLFGYFLVKNKLXXXXXXXXXXXXXXXXXXXLD 187
               +                      F+  F YFL   KL                    +
Sbjct:   131 CYLYSIGLLYLPVSTYSLICASQLAFNAFFSYFLNSQKLTPIILNSLFLLTISSTLLAFN 190

Query:   188 SDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSL 247
             ++      +T  +Y+ GF+  +  SA +GL+ +L +L F+K++ +++F  V++  + VSL
Sbjct:   191 NEETDSTKVTKGEYVKGFICTVAASAGYGLVLSLQQLAFLKVLKKQNFSEVMDMIIYVSL 250

Query:   248 FAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLAST 307
              A   + +G+  S +++ + SE   +K G  SY + L+W A+T+Q+  +GGT ++F  S+
Sbjct:   251 VASCVSVVGLFASSEWKTLSSEMDNYKHGKVSYIMNLVWTAVTWQVFSIGGTGLIFELSS 310

Query:   308 VLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIY 353
             + +  ++ + +P+  I AVI+ HD M+G K++S+I+  WGF SY+Y
Sbjct:   311 LFSNAISVLGLPVVPILAVIIFHDKMNGLKVISMILAIWGFTSYVY 356

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=ISS;TAS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015931 "nucleobase-containing compound transport" evidence=ISS;TAS

GO:0006863 "purine nucleobase transport" evidence=TAS

GO:0016020 "membrane" evidence=TAS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2032159 PUP3 "AT1G28220" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 87/306 (28%), Positives = 154/306 (50%)

Query:    64 LLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTF-----PTPLDL---KLTL 115
             L+ R+Y+ NGG   W  +++  AG+P+  + LL +Y   +        T   L   +L +
Sbjct:    22 LIMRLYFNNGGKRIWFSTFLETAGFPVIFIPLLFSYITRRRSNNVGDSTSFFLIKPRLLI 81

Query:   116 AYIVLGFLSAADNLMXXXXXXXXXXXXXXXXXXXXXVFSTLFGYFLVKNKLXXXXXXXXX 175
             A +++G LS  DN +                      F  +F +F+VK+K          
Sbjct:    82 AAVIVGILSGFDNYLYAYGIAYLPVSTAALIIASQLAFIAIFSFFMVKHKFTPFTINAVV 141

Query:   176 XXXXXXXXXXLDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSF 235
                       + +++D+  + T +QYI GF+  +  + ++  I  L EL + K     S+
Sbjct:   142 LLTVGAAVLGMHTETDKPVHETHKQYITGFLITVAAAVMYAFILPLVELAYQKAKQTMSY 201

Query:   236 HVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGV 295
              +VLE Q+++ L A   + IG+ ++ DF+ +  EA+ FK G A +Y+V ++ AI +Q   
Sbjct:   202 TLVLEFQLILCLLASIVSVIGMFIAGDFKALPKEAREFKLGEALFYVVAVFSAIIWQGFF 261

Query:   296 LGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGN 355
             LG   ++F  S++++GI+ ++ +PIT + AVI  H+     K LSL ++ WGF SY YG 
Sbjct:   262 LGAIGLIFSTSSLVSGIMISVLLPITEVLAVIFYHEKFQAEKGLSLALSLWGFVSYFYGE 321

Query:   356 SSTPKD 361
               + +D
Sbjct:   322 IKSGED 327

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=ISS;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0015931 "nucleobase-containing compound transport" evidence=ISS;TAS

GO:0016020 "membrane" evidence=IEA;TAS

GO:0006863 "purine nucleobase transport" evidence=RCA;TAS

TAIR|locus:2032148 PUP1 "AT1G28230" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 88/312 (28%), Positives = 152/312 (48%)

Query:    64 LLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVF--------------KTFPTPL 109
             LL+R+Y+ NGG   W +S+++ AG+P+  + LL ++                 KT    +
Sbjct:    22 LLTRLYFTNGGKRIWFMSFLSTAGFPIILIPLLVSFLSRRRSNRNPNNAENKRKTKLFLM 81

Query:   110 DLKLTLAYIVLGFLSAADNLMXXXXXXXXXXXXXXXXXXXXXVFSTLFGYFLVKNKLXXX 169
             +  L +A IV+G L+  DN +                      F+ LF + LVK K    
Sbjct:    82 ETPLFIASIVIGLLTGLDNYLYSYGLAYLPVSTSSLIIGTQLAFNALFAFLLVKQKFTPF 141

Query:   170 XXXXXXXXXXXXXXXXLDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKL 229
                             L SD D+    + ++Y++GF+  ++ + L+  I  L EL + K 
Sbjct:   142 SINAVVLLTVGIGILALHSDGDKPAKESKKEYVVGFLMTVVAALLYAFILPLVELTYKKA 201

Query:   230 VGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFK-GGVASYYLVLIWGA 288
                 +F +VLE Q+++ L A  F  IG+ +  DF+ +  EA+ FK GG   YY +++   
Sbjct:   202 RQEITFPLVLEIQMVMCLAATFFCVIGMFIVGDFKVIAREAREFKIGGSVFYYALIVITG 261

Query:   289 ITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGF 348
             I +Q   LG   ++F AS++ +G+L ++ +P+T + AV+   +     K +SL+++ WGF
Sbjct:   262 IIWQGFFLGAIGIVFCASSLASGVLISVLLPVTEVFAVVCFREKFQAEKGVSLLLSLWGF 321

Query:   349 GSYIYGNSSTPK 360
              SY YG   + K
Sbjct:   322 VSYFYGEFKSGK 333

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=ISM

GO:0015931 "nucleobase-containing compound transport" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA;IDA

GO:0010184 "cytokinin transport" evidence=IDA

GO:0015211 "purine nucleoside transmembrane transporter activity" evidence=IDA

TAIR|locus:2138203 ATPUP13 "AT4G08700" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 89/348 (25%), Positives = 155/348 (44%)

Query:    11 MDEVSPMPSVSLWDRISNSKTLAWESYKRKPISHWIXXXXXXXXXXXXFPASSLLSRVYY 70
             MDE   M  +   D  +   ++  +  K K    WI               + LL R YY
Sbjct:     1 MDEEEAMLLLKEEDEGTRRTSVPTQLMKLKRTHWWILVFISIFFLISAQAIAVLLGRFYY 60

Query:    71 ANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKL-TLA--YIVLGFLSAAD 127
               GG SKWI + V   G+P+   + LP  F+  +  +       TL   Y+ LGF    D
Sbjct:    61 NEGGNSKWISTLVQTCGFPI---LYLPLCFLPASHSSSSSCSFKTLVWIYLSLGFAIGLD 117

Query:   128 NLMXXXXXXXXXXXXXXXXXXXXXVFSTLFGYFLVKNKLXXXXXXXXXXXXXXXXXXXLD 187
             NL+                      F+ +F Y++   K+                   LD
Sbjct:   118 NLLYSFGLLYLSASTYSILCSSQLAFNGVFSYYINSQKITCLILFSVLFLSVSAVLVSLD 177

Query:   188 SDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSL 247
              DS+     +   Y++G +  +  S ++ L  +L +  F  ++   +F +VLE Q+  SL
Sbjct:   178 DDSNSPSGDSKWSYLIGCLCTVFASLIYSLQLSLMQFSFENVLKSETFSMVLEMQIYTSL 237

Query:   248 FAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLAST 307
              A     IG+  S ++  +  E + F  G   Y L L+  A+++QLG +G  A++FL S+
Sbjct:   238 VASCVAVIGLFASGEWMLLSVEMEEFHEGQVIYVLTLVGTAVSWQLGSVGAVALIFLVSS 297

Query:   308 VLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGN 355
             + + ++  + + +T +AA+ + HD ++  K++++++ F GFG YIY N
Sbjct:   298 LFSNLIGTLSLIVTPLAAIAVFHDKLTEVKMVAMLIAFMGFGFYIYQN 345

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=ISS;TAS

GO:0015931 "nucleobase-containing compound transport" evidence=ISS;TAS

GO:0006863 "purine nucleobase transport" evidence=TAS

GO:0016020 "membrane" evidence=TAS

TAIR|locus:1009023376 PUP8 "AT4G18195" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 85/300 (28%), Positives = 146/300 (48%)

Query:    62 SSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKT-FPTPLDLK----LTL- 115
             S++L RVYY NGG S W+ + V + G+P+  L L   +   K   PT  D +     T+ 
Sbjct:    62 STILGRVYYENGGKSTWMGTLVQLIGFPV--LFLFRFFSQTKNPKPTEADFRKFSSFTIL 119

Query:   116 --AYIVLGFLSAADNLMXXXXXXXXXXXXXXXXXXXXXVFSTLFGYFLVKNKLXXXXXXX 173
                YIV G L +A++ M                      F+  F YFL   K        
Sbjct:   120 GSVYIVTGLLVSANSYMSSVGLLYLPVSTFSLILASQLAFTAFFSYFLNSQKFTPFIVNS 179

Query:   174 XXXXXXXXXXXXLDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRR 233
                         +++DS+    ++  +Y++G +  I  SA  GL+ +L +L+  K++ ++
Sbjct:   180 LFLLTISSALLVVNTDSENTAKVSRVKYVIGIICTIGASAGIGLLLSLVQLILRKVLKKQ 239

Query:   234 SFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQL 293
             +F  V +     SL A     IG+  S +++ + SE + +K G   Y + L   AI++Q+
Sbjct:   240 TFSTVTDLVAYQSLVASCVVLIGLFASGEWKTLTSEMENYKLGKVPYVMTLASIAISWQV 299

Query:   294 GVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIY 353
               +G   ++F +S+V +  + A+ +PI  + AVI+ HD M+  KI S+I+  WGF S++Y
Sbjct:   300 YTIGVVGLIFESSSVFSNSITAVGLPIVPVVAVIVFHDKMNASKIFSIILAIWGFISFVY 359

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=TAS

GO:0006863 "purine nucleobase transport" evidence=TAS

GO:0015931 "nucleobase-containing compound transport" evidence=TAS

GO:0016020 "membrane" evidence=TAS

TAIR|locus:1009023365 AT4G18205 "AT4G18205" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 86/334 (25%), Positives = 151/334 (45%)

Query:    26 ISNSKTLAWESYKRKPISHWIXXXXXXXXXXXXFPASSLLSRVYYANGGTSKWIISWVAV 85
             + + +T ++   + K    W+             P +++L R+YY NGG S ++++ + +
Sbjct:    20 LDHEETESFSVPQTKNCKRWLRVSIYAIFVIFCQPLATVLGRLYYENGGKSTYVVTLLQL 79

Query:    86 AGWPLTAL------ILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMXXXXXXXXX 139
              G+P+  L      I  P         +P    L   Y+  G L +A   +         
Sbjct:    80 IGFPVLILFRFFSRIRQPKSTDTNFSQSPSFTTLASVYLCTGLLVSAYAYLSAVGLLYLP 139

Query:   140 XXXXXXXXXXXXVFSTLFGYFLVKNKLXXXXXXXXXXXXXXXXXXXLDSDSDRYGNITDR 199
                          F+  F YFL   K                    +++DS+   N++  
Sbjct:   140 VSTFSLILASQLAFTAFFSYFLNSQKFTPLIVNSLFLLTVSSALLVVNTDSENTTNVSRV 199

Query:   200 QYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVV 259
             QY++GF+  I  SA  GL+ +L +L+F K+  + +   VL+     SL A     IG+  
Sbjct:   200 QYVIGFICTIGASAGIGLVLSLIQLLFRKVFTKHTSSAVLDLANYQSLVATCVVLIGLFA 259

Query:   260 SKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVP 319
             S +++ + SE + +K G  SY L L   AI +Q+  +G   ++F +S+V +  + A+ +P
Sbjct:   260 SGEWRTLPSEMRNYKLGKVSYILTLASAAIFWQVYTVGCVGLIFESSSVFSNSITAVGLP 319

Query:   320 ITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIY 353
             I  + AVI+ HD M   KI S+I+  WGF S++Y
Sbjct:   320 IVPVVAVIVFHDKMDASKIFSIILAIWGFLSFVY 353

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023346 PUP7 "AT4G18197" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 89/333 (26%), Positives = 152/333 (45%)

Query:    27 SNSKTLAWESYKRKPISHWIXXXXXXXXXXXXFPASSLLSRVYYANGGTSKWIISWVAVA 86
             S+S     E+YKR     W+             P +++L R+YY NGG S ++++ + + 
Sbjct:    29 SSSAVPQTENYKR-----WLRVSIYVIFVLFCQPLATILGRLYYENGGNSTYVVTLLQLI 83

Query:    87 GWPLTAL------ILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMXXXXXXXXXX 140
             G+P+  L      I  P         +P    L   Y+  G L +A   +          
Sbjct:    84 GFPVLVLFRFFSRIRQPKSTDTNFSQSPSFTTLASVYLCTGLLVSAYAYLSAVGLLYLPV 143

Query:   141 XXXXXXXXXXXVFSTLFGYFLVKNKLXXXXXXXXXXXXXXXXXXXLDSDSDRYGNITDRQ 200
                         F+  F YFL   K                    +++DS+   N++  Q
Sbjct:   144 STFSLILASQLAFTAFFSYFLNSQKFTPLIVSSLLLLTVSSALLVVNTDSENSTNVSRVQ 203

Query:   201 YIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVS 260
             Y++GF+  I  SA  GL+ +L +++F K+  + +   V +  +  SL A     IG+  S
Sbjct:   204 YVIGFICTIGASAGIGLLLSLIQMLFRKVFTKHTSSAVTDLAIYQSLVASCVVLIGLFAS 263

Query:   261 KDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPI 320
              +++ + SE + +K G  SY L L   AI++Q+  LG   ++F +S+V +  + A+ +PI
Sbjct:   264 GEWETLPSEMRNYKLGKVSYVLTLASAAISWQVYTLGLVGLIFESSSVFSNSITAVGLPI 323

Query:   321 TSIAAVILLHDPMSGFKILSLIVTFWGFGSYIY 353
               +AAVI+ HD M   KI S+I+   GF S++Y
Sbjct:   324 VPVAAVIVFHDRMDASKIFSIILAICGFLSFVY 356

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=TAS

GO:0006863 "purine nucleobase transport" evidence=TAS

GO:0015931 "nucleobase-containing compound transport" evidence=TAS

GO:0016020 "membrane" evidence=TAS

TAIR|locus:2163026 PUP12 "AT5G41160" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 81/314 (25%), Positives = 139/314 (44%)

Query:    45 WIXXXXXXXXXXXXFPASSLLSRVYYANGGTSKWIISWVAVAGWPLT--ALILLPTYFVF 102
             WI               S LL R YY  GG SKWI + V   G+P+    L LLP     
Sbjct:    29 WILVFISIFFLISAQAISVLLGRFYYNEGGNSKWISTLVQTGGFPILYLPLSLLPASQSS 88

Query:   103 KTFPTPLDLK-LTLAYIVLGFLSAADNLMXXXXXXXXXXXXXXXXXXXXXVFSTLFGYFL 161
              +  +    K L   Y+ LGF    DN +                      F+ +F Y++
Sbjct:    89 SSSSSSSSFKTLVWIYLSLGFAIGLDNFLYSVGLLYLSASTYSILCASQLAFNGVFYYYI 148

Query:   162 VKNKLXXXXXXXXXXXXXXXXXXXLDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFAL 221
                K+                   LD DS+     +   Y++G    +  S ++ L  +L
Sbjct:   149 NSQKITCLIFFSVLFLSISAVLVSLDDDSNSPSGDSKWSYLIGCFCAVFASLIYSLQLSL 208

Query:   222 SELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYY 281
              +  F K++   +  +VLE Q+  SL A     IG+  S ++  +  E + F+ G   Y 
Sbjct:   209 MQFSFEKVLKSETLSMVLEMQIYTSLVASCVAVIGLFASGEWMLLSVEMEEFQEGQVIYV 268

Query:   282 LVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSL 341
             L L+  A++ QLG +G  +++FL S++ + +++ + + +T +AA+ + HD ++  K++++
Sbjct:   269 LTLVGAAVSCQLGCVGAVSLIFLVSSLFSNLISTLSLIVTPLAAIAVFHDKLTEVKMVAM 328

Query:   342 IVTFWGFGSYIYGN 355
              + F GF  YIY N
Sbjct:   329 PIAFTGFTFYIYQN 342

GO:0005345 "purine nucleobase transmembrane transporter activity" evidence=ISS;TAS

GO:0005739 "mitochondrion" evidence=ISM

GO:0015931 "nucleobase-containing compound transport" evidence=ISS;TAS

GO:0006863 "purine nucleobase transport" evidence=TAS

GO:0016020 "membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZUH3	PUP5_ARATH	No assigned EC number	0.7382	0.9311	0.9362	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00012052001 SubName- Full=Chromosome undetermined scaffold_2861, whole genome shotgun sequence; Flags- Fragment; (377 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	363
pfam03151	149	pfam03151, TPT, Triose-phosphate Transporter famil	2e-22

>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family

 Score = 91.9 bits (229), Expect = 2e-22
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 3/151 (1%)

Query: 204 GFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDF 263
           GF+  +  SAL  L   LS+ +  K   + +   VLE    +S  AF     G++ S+ F
Sbjct: 1   GFILALAASALFALRLILSQKLLKKK--KGTKLNVLELLYYLSPVAFIVLLPGLLFSEGF 58

Query: 264 QGMKSEAKTF-KGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITS 322
           +  K   K F     + Y L+L+   +   L  L    +L   S + + +   ++  +  
Sbjct: 59  KLGKFILKFFGDLKTSRYVLLLLLSGVLAFLYNLSAFGLLGRTSPLTSSVAGTVKRVVVI 118

Query: 323 IAAVILLHDPMSGFKILSLIVTFWGFGSYIY 353
           + +VI+  DP++   IL L +   G   Y Y
Sbjct: 119 VLSVIIFGDPVTFLNILGLAIAILGVVLYSY 149

This family includes transporters with a specificity for triose phosphate. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	363
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.94
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.9
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.87
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.86
PLN00411	358	nodulin MtN21 family protein; Provisional	99.85
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.85
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.8
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.78
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.76
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.75
PRK11272	292	putative DMT superfamily transporter inner membran	99.75
PRK15430	296	putative chloramphenical resistance permease RarD;	99.69
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.67
PRK11689	295	aromatic amino acid exporter; Provisional	99.66
KOG2765	416	consensus Predicted membrane protein [Function unk	99.65
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.65
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.55
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.47
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.37
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.34
COG2962	293	RarD Predicted permeases [General function predict	99.34
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.31
KOG1582	367	consensus UDP-galactose transporter related protei	99.31
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.25
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.21
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.2
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.17
KOG1580	337	consensus UDP-galactose transporter related protei	99.11
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.86
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.86
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.8
KOG1581	327	consensus UDP-galactose transporter related protei	98.77
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.69
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.59
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.23
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	98.22
PLN00411	358	nodulin MtN21 family protein; Provisional	98.2
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.18
KOG2766	336	consensus Predicted membrane protein [Function unk	98.08
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.07
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.0
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.0
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.95
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	97.93
PRK11689	295	aromatic amino acid exporter; Provisional	97.9
COG2510	140	Predicted membrane protein [Function unknown]	97.79
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.79
PRK15430	296	putative chloramphenical resistance permease RarD;	97.78
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.76
PRK11272	292	putative DMT superfamily transporter inner membran	97.75
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	97.57
PRK13499	345	rhamnose-proton symporter; Provisional	97.45
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.37
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.35
KOG2922	335	consensus Uncharacterized conserved protein [Funct	97.22
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.2
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.17
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.16
COG2076	106	EmrE Membrane transporters of cations and cationic	97.15
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.13
PRK11431	105	multidrug efflux system protein; Provisional	97.12
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.06
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	96.94
COG2510	140	Predicted membrane protein [Function unknown]	96.91
PF13536	113	EmrE: Multidrug resistance efflux transporter	96.77
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	96.65
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.3
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	95.61
PRK13499	345	rhamnose-proton symporter; Provisional	95.6
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	95.54
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	95.46
COG2962	293	RarD Predicted permeases [General function predict	95.45
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.41
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	95.07
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	94.61
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	94.25
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	93.23
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	93.03
COG2076	106	EmrE Membrane transporters of cations and cationic	92.83
PRK09541	110	emrE multidrug efflux protein; Reviewed	92.8
PRK10650	109	multidrug efflux system protein MdtI; Provisional	92.61
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	92.13
PRK11431	105	multidrug efflux system protein; Provisional	91.98
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	91.73
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	91.58
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	91.25
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	86.72
KOG2765	416	consensus Predicted membrane protein [Function unk	85.21

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.94  E-value=5e-24  Score=207.55  Aligned_cols=298  Identities=15%  Similarity=0.176  Sum_probs=235.2

Q ss_pred             HHHHHHHHHHhcchhhhhhhHHhHhcCCcchHHHHHHHhhhhHHHHHHHhhccccccC---C-CC-------CCcHHHHH
Q 017963           47 LLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKT---F-PT-------PLDLKLTL  115 (363)
Q Consensus        47 ~~~~~~~~~~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~---~-~~-------~~~~~l~~  115 (363)
                      .-.++.+.+.+++++-+++.||-.+.+|.+..-+|.|-.++.-++.++++..+++.|.   + .+       ...+...-
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            4455667788999999999999999999999999999999999999999987765321   1 11       11223444


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCC--C
Q 017963          116 AYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDR--Y  193 (363)
Q Consensus       116 ~~~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~--~  193 (363)
                      .+++..++...|| ++..+++++|++|+++..|++...|++|++++++||+++.||.+++++++|+++++.+..+..  .
T Consensus        95 ~~vPa~iYalqNn-l~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~  173 (345)
T KOG2234|consen   95 VSVPALIYALQNN-LQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAK  173 (345)
T ss_pred             HHHHHHHHHHhhh-HHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence            5666665555555 666999999999999999999999999999999999999999999999999999985554322  2


Q ss_pred             CCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhh
Q 017963          194 GNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRS-FHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKT  272 (363)
Q Consensus       194 ~~~s~~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~-~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~  272 (363)
                      ++.+..+.+.|+..++++|.++|+    .++.|||+.|+.. -.++.++|  +++++.++.+++++.. |++...  ..+
T Consensus       174 ~~~~~~n~~~G~~avl~~c~~Sgf----AgvYfEkiLK~s~~s~wi~Niq--L~~~g~~f~~l~~~~~-d~~~i~--~~g  244 (345)
T KOG2234|consen  174 SESSAQNPFLGLVAVLVACFLSGF----AGVYFEKILKGSNVSLWIRNIQ--LYFFGILFNLLTILLQ-DGEAIN--EYG  244 (345)
T ss_pred             CCCcccchhhhHHHHHHHHHHHHH----HHHHHHHHHhcCCchHHHHHHH--HHHHHHHHHHHHHhhc-cccccc--cCC
Confidence            245678899999999999999999    8888999998754 35999999  7778899888888877 666554  223


Q ss_pred             hcccchhHHHHHHHHHHHHHHHH-HhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Q 017963          273 FKGGVASYYLVLIWGAITFQLGV-LGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSY  351 (363)
Q Consensus       273 f~~g~~~y~l~lv~tav~~q~~~-lgv~glv~~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y  351 (363)
                      |..|.    -..+|-.+..++.. +-+.-+.+++|+++++...++.+.+++++++++|+-+++..-.+|..+++.....|
T Consensus       245 ff~G~----s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY  320 (345)
T KOG2234|consen  245 FFYGY----SSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLY  320 (345)
T ss_pred             ccccc----cHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh
Confidence            33443    33555554444432 44666777999999999999999999999999999999999999999999666666


Q ss_pred             HhcccCC
Q 017963          352 IYGNSST  358 (363)
Q Consensus       352 ~y~~~~~  358 (363)
                      .+..+.|
T Consensus       321 ~~~P~~~  327 (345)
T KOG2234|consen  321 SLYPARD  327 (345)
T ss_pred             hcCCccc
Confidence            5444554

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.90  E-value=2.6e-21  Score=187.72  Aligned_cols=284  Identities=20%  Similarity=0.259  Sum_probs=219.2

Q ss_pred             hhhhhHHhHhcCCc-chHHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 017963           62 SSLLSRVYYANGGT-SKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPA  140 (363)
Q Consensus        62 ~~Ll~r~y~~~gg~-~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~~~~Gll~~~~n~ly~~gL~ylpv  140 (363)
                      +.+..+....+.++ ..|..|++|.+.-.+...+.....+ ++.+++.+.++.    +..+++....+.+-+.+++|+|.
T Consensus        16 g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~al~~i~~   90 (303)
T PF08449_consen   16 GILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK-FPKSRKIPLKKY----AILSFLFFLASVLSNAALKYISY   90 (303)
T ss_pred             HHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc-ccCCCcChHHHH----HHHHHHHHHHHHHHHHHHHhCCh
Confidence            35556666666666 7999999999999988766654332 122222234443    33478888888888899999999


Q ss_pred             hHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCC-CCCcchhhhHHHHHHHHHHHHHHHH
Q 017963          141 STAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYG-NITDRQYIMGFVWDILGSALHGLIF  219 (363)
Q Consensus       141 st~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~-~~s~~~~~~G~~l~L~Aa~l~gl~l  219 (363)
                      +++.++.+++++++|+++++++|||++++++.++++.++|+++...++..++++ +.+..+...|+++.+.+.++.|+..
T Consensus        91 p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~  170 (303)
T PF08449_consen   91 PTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTG  170 (303)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988777554332 2222333449999999999999999


Q ss_pred             HHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHh--hcccccchhhhhhhcccchhHHHHHHHHHHHHHHHHHh
Q 017963          220 ALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVV--SKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLG  297 (363)
Q Consensus       220 ~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg~~~--~g~~~~l~~e~~~f~~g~~~y~l~lv~tav~~q~~~lg  297 (363)
                      ...|..+++..++     ..|+.+|.++++.+++.+....  .+|+.+-    .++....+.....+..+.++-.++..+
T Consensus       171 ~~qe~~~~~~~~~-----~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~----~~f~~~~p~~~~~l~~~s~~~~~g~~~  241 (303)
T PF08449_consen  171 VYQEKLFKKYGKS-----PWELMFYTNLFSLPFLLILLFLLPTGEFRSA----IRFISAHPSVLLYLLLFSLTGALGQFF  241 (303)
T ss_pred             HHHHHHHHHhCCc-----HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH----HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            9988888877322     3899999999999998887777  6664322    222112222223344555555555666


Q ss_pred             hhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHhcccCCC
Q 017963          298 GTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGNSSTP  359 (363)
Q Consensus       298 v~glv~~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y~~~~~~  359 (363)
                      +..++...+++..+++.+++++++.++++++||+++++.+++|.++++.|...|.+.+++++
T Consensus       242 i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~  303 (303)
T PF08449_consen  242 IFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN  303 (303)
T ss_pred             HHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence            77778888999999999999999999999999999999999999999999999999887664

; GO: 0055085 transmembrane transport

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.87  E-value=1.2e-19  Score=178.58  Aligned_cols=272  Identities=19%  Similarity=0.188  Sum_probs=186.0

Q ss_pred             CCcchHHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhH
Q 017963           73 GGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLV  152 (363)
Q Consensus        73 gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~  152 (363)
                      |=+-+..+|+.-=.-..+...|..+.+ +++++.....++-+.-|++++++-...|++...|++|+++++.+++.++..+
T Consensus        39 ~~~~P~~Qs~~~Y~~l~~vy~~~~~~r-~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~  117 (334)
T PF06027_consen   39 GVNIPTFQSFFNYVLLALVYTPILLYR-RGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIP  117 (334)
T ss_pred             CccCcHHHHHHHHHHHHHHHhhhhhhc-cccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhH
Confidence            555577777766655555545544432 2222211122222334677789999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017963          153 FSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGR  232 (363)
Q Consensus       153 Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~s~~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~  232 (363)
                      |++++|++++|+|+++.|+.|+++.+.|.+++...|....+++.++.+...||++++.||++||++-.+    -|+..|+
T Consensus       118 ~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~----~E~~v~~  193 (334)
T PF06027_consen  118 FVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVL----EEKLVKK  193 (334)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHH----HHHhccc
Confidence            999999999999999999999999999999887776543333345667899999999999999995555    5666555


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhcccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH
Q 017963          233 RSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGI  312 (363)
Q Consensus       233 ~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~~g~~~y~l~lv~tav~~q~~~lgv~glv~~~ssL~a~v  312 (363)
                      .+   ..|+..+.+++++++..+-..+- |++++..  -.|. ++.  ...++..+++-.+.+.-+.-+...+|+...|+
T Consensus       194 ~~---~~~~lg~~Glfg~ii~~iq~~il-e~~~i~~--~~w~-~~~--~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nL  264 (334)
T PF06027_consen  194 AP---RVEFLGMLGLFGFIISGIQLAIL-ERSGIES--IHWT-SQV--IGLLVGYALCLFLFYSLVPIVLRMSSATFFNL  264 (334)
T ss_pred             CC---HHHHHHHHHHHHHHHHHHHHHhe-ehhhhhc--cCCC-hhh--HHHHHHHHHHHHHHHHHHHHHHHhCccceeeh
Confidence            43   46778888999988877544332 3333411  1221 221  11122222222222211122233555555554


Q ss_pred             HHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHhcccCC
Q 017963          313 LNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGNSST  358 (363)
Q Consensus       313 i~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y~~~~~  358 (363)
                      -....-|.+.+..+++||+++++...+|.++++.|+..|...+.++
T Consensus       265 sLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~  310 (334)
T PF06027_consen  265 SLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE  310 (334)
T ss_pred             HHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence            4433447778999999999999999999999999999998776443

Some of the sequences in this family are annotated as putative membrane proteins.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.86  E-value=1.1e-19  Score=172.11  Aligned_cols=219  Identities=25%  Similarity=0.356  Sum_probs=165.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCC
Q 017963          112 KLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSD  191 (363)
Q Consensus       112 ~l~~~~~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~  191 (363)
                      |....+++..++++.+|.+...+++++|+++++++.|+++++|++|+++++|+|+++.||.|++++++|+++++.++..+
T Consensus        15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            44444556666676666666699999999999999999999999999999999999999999999999999987766432


Q ss_pred             C--CC--C----CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017963          192 R--YG--N----ITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRS-FHVVLEQQVMVSLFAFAFTTIGVVVSKD  262 (363)
Q Consensus       192 ~--~~--~----~s~~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~-~~~vle~q~~~~l~a~~~~~vg~~~~g~  262 (363)
                      +  ++  +    .+..+...|+++++.++.+.|+    .....||+.|+.. ..++.++|  .++.+.++..+..... |
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~----agVy~E~~lK~~~~s~~~~N~q--L~~~gi~~~~~~~~~~-~  167 (244)
T PF04142_consen   95 SDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGF----AGVYFEKLLKRSNVSLWIQNMQ--LYLFGILFNLLALLLS-D  167 (244)
T ss_pred             cccccccccccccccchhHhHHHHHHHHHHHHHH----HHHHHHHHhcccchhHHHHHHH--HHHHHHHHHHHHHhcc-c
Confidence            1  11  1    1245678999999999999999    6666777777654 34777777  5566666666665554 4


Q ss_pred             cccchhhhhhhcccchhHHHHHHHHHH-HHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHH
Q 017963          263 FQGMKSEAKTFKGGVASYYLVLIWGAI-TFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSL  341 (363)
Q Consensus       263 ~~~l~~e~~~f~~g~~~y~l~lv~tav-~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~  341 (363)
                      ++.+.+  +.|.+|.    ...+|..+ .+.+..+-+.-+.++++++.+++..++.+.++.++++++||.+++..-.+|.
T Consensus       168 ~~~~~~--~g~f~G~----~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~  241 (244)
T PF04142_consen  168 GSAISE--SGFFHGY----SWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGA  241 (244)
T ss_pred             cccccc--CCchhhc----chHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhe
Confidence            443332  2232332    22344443 3344557777888999999999999999999999999999999999988876


Q ss_pred             HH
Q 017963          342 IV  343 (363)
Q Consensus       342 ~l  343 (363)
                      .+
T Consensus       242 ~~  243 (244)
T PF04142_consen  242 AL  243 (244)
T ss_pred             ec
Confidence            54

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.85  E-value=1.6e-18  Score=172.66  Aligned_cols=285  Identities=13%  Similarity=0.103  Sum_probs=179.8

Q ss_pred             chhhhhhhHHhHhcCCcchHHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 017963           59 FPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYL  138 (363)
Q Consensus        59 ~~~~~Ll~r~y~~~gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~~~~Gll~~~~n~ly~~gL~yl  138 (363)
                      ..+-..+.|.-++.|=+..-+ .+.-...--+++.|+.+..+ +++++++..++.+....+.|++-...+.++..|++|+
T Consensus        25 ~~~~~~~~k~a~~~G~~~~~~-~~~R~~iA~l~Ll~~~~~~~-~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~t  102 (358)
T PLN00411         25 VVGISTLFKVATSKGLNIYPF-LGYSYLLASLLLLPSLFFTN-RSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYS  102 (358)
T ss_pred             HHHHHHHHHHHHHCCCCccHH-HHHHHHHHHHHHHHHHHHHH-HhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            345567888888655555443 34433332333445544321 1111112223333333445655545566777999999


Q ss_pred             ChhHHHHHHhhhhHHHHHHHHHH------hcccccHHHHHHHHHHHHHHHHhhccCCCC---------------C-CCCC
Q 017963          139 PASTAALLASSSLVFSTLFGYFL------VKNKLNAAMINAVVIITAAMTIIALDSDSD---------------R-YGNI  196 (363)
Q Consensus       139 pvst~sli~ssql~Ftalfs~~i------lkek~t~~~i~svvllt~Gavll~~~~~~~---------------~-~~~~  196 (363)
                      |++.++++.+++|+|++++++++      +|||.++.++.|+++.++|+.++..+++.+               . +...
T Consensus       103 sa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~  182 (358)
T PLN00411        103 NPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSS  182 (358)
T ss_pred             cHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCC
Confidence            99999999999999999999999      699999999999999999998876543211               0 0111


Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH-HHHHhhcc-cccchhhhhhhc
Q 017963          197 TDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTT-IGVVVSKD-FQGMKSEAKTFK  274 (363)
Q Consensus       197 s~~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~-vg~~~~g~-~~~l~~e~~~f~  274 (363)
                      ...+..+|+++.++|+++|++|..+.+    |..++++.  ...+.+|...++..++. .+...+++ .+...   ..+.
T Consensus       183 ~~~~~~lG~~l~l~aa~~wa~~~il~~----~~~~~~~~--~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~  253 (358)
T PLN00411        183 SNSDWLIGGALLTIQGIFVSVSFILQA----HIMSEYPA--AFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWI---IHFD  253 (358)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHcCc--HhHHHHHHHHHHHHHHHHHHHHHccCCcccce---eccc
Confidence            223346799999999999999888854    44333332  23445555555555554 45555532 11110   0110


Q ss_pred             c-cchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHH-HHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q 017963          275 G-GVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITS-IAAVILLHDPMSGFKILSLIVTFWGFGSYI  352 (363)
Q Consensus       275 ~-g~~~y~l~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~-ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~  352 (363)
                      . .....|..+ .+.+.|.+...++..+.....+++.+     ..|+.+ +++++++||++++.+++|+++++.|+....
T Consensus       254 ~~~~~i~y~~i-~t~lay~lw~~~v~~~ga~~as~~~~-----L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~  327 (358)
T PLN00411        254 ITLITIVTMAI-ITSVYYVIHSWTVRHKGPLYLAIFKP-----LSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM  327 (358)
T ss_pred             hHHHHHHHHHH-HHHHHHHHHHHHHhccCchHHHHHHh-----HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            0 001222323 34556665555655555555555555     778865 999999999999999999999999999988


Q ss_pred             hcccCCCC
Q 017963          353 YGNSSTPK  360 (363)
Q Consensus       353 y~~~~~~~  360 (363)
                      +++.+|+|
T Consensus       328 ~~~~~~~~  335 (358)
T PLN00411        328 WGKANEEK  335 (358)
T ss_pred             hhhhhhhh
Confidence            77655443

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.85  E-value=1.1e-18  Score=168.53  Aligned_cols=278  Identities=8%  Similarity=0.039  Sum_probs=174.5

Q ss_pred             hhhhhhhHHhHhcCCcchHHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 017963           60 PASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLP  139 (363)
Q Consensus        60 ~~~~Ll~r~y~~~gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~~~~Gll~~~~n~ly~~gL~ylp  139 (363)
                      ..-.++.|.-.+ +-+-.+..++.|.+.--+...+....   ...++++..++.+...++.|++.+.++.+.+++++|+|
T Consensus        15 ~~~~~~NK~~l~-~~~~P~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s   90 (302)
T TIGR00817        15 VYFNIYNKKLLN-VFPYPYFKTLISLAVGSLYCLLSWSS---GLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVA   90 (302)
T ss_pred             HHHHHHHHHHHh-hCChhHHHHHHHHHHHHHHHHHHHHh---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            334444443333 35778999999976543333222111   11112233455555567779988899999999999999


Q ss_pred             hhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 017963          140 ASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIF  219 (363)
Q Consensus       140 vst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~s~~~~~~G~~l~L~Aa~l~gl~l  219 (363)
                      ++.++++.+++|+|++++++++.|||++++++.|+++.++|+++...++ .        +....|++++++|++++++|.
T Consensus        91 ~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-~--------~~~~~G~~~~l~a~~~~a~~~  161 (302)
T TIGR00817        91 VSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE-L--------SFNWAGFLSAMISNITFVSRN  161 (302)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc-c--------cccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999997753211 1        124679999999999999977


Q ss_pred             HHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhc--cc-chhHHHHHHHHHHHHHHHHH
Q 017963          220 ALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFK--GG-VASYYLVLIWGAITFQLGVL  296 (363)
Q Consensus       220 ~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~--~g-~~~y~l~lv~tav~~q~~~l  296 (363)
                      .+.    ||..+++.+ ..+++..|...++.++++...+..++.+....|..++.  .. ...+...+..+...+.....
T Consensus       162 v~~----k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (302)
T TIGR00817       162 IFS----KKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQ  236 (302)
T ss_pred             HHH----HHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHH
Confidence            765    555441111 13445555555555555533333322222222221110  01 11122112222111111111


Q ss_pred             hhhhhhhhhhhhhHHHHHHhhHHHHH-HHHHHHhCCCCchhHHHHHHHHHHHHHHHHhccc
Q 017963          297 GGTAVLFLASTVLAGILNAIRVPITS-IAAVILLHDPMSGFKILSLIVTFWGFGSYIYGNS  356 (363)
Q Consensus       297 gv~glv~~~ssL~a~vi~~~~lPv~~-ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y~~~  356 (363)
                      -..-.+..+++...++. ....|+.. +++++++||++++.+++|+++++.|...|.+.++
T Consensus       237 ~~~~~l~~~sa~t~sv~-~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~  296 (302)
T TIGR00817       237 VAFMLLGRVSPLTHSVG-NCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKA  296 (302)
T ss_pred             HHHHHHccCCchHHHHH-hhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence            11112334455555655 44667755 8999999999999999999999999988876554

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.80  E-value=2.5e-16  Score=156.21  Aligned_cols=291  Identities=12%  Similarity=0.072  Sum_probs=177.2

Q ss_pred             HHHHHHHHHHhcchhhhhhhHHhHhcCCcchHHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHHHHHHHHHHH
Q 017963           47 LLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAA  126 (363)
Q Consensus        47 ~~~~~~~~~~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~~~~Gll~~~  126 (363)
                      .+.+.++.--..+.......|.-.+. -+-.|..++.|..---+....+.....+++.+- +..++.+.-.++.|++-..
T Consensus        49 ~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~llp~gl~~~~  126 (350)
T PTZ00343         49 KLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATGFRKIPRI-KSLKLFLKNFLPQGLCHLF  126 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CCHHHHHHHHHHHHHHHHH
Confidence            34445555556666677777766554 344899999997743333322221111111111 1122222223444655554


Q ss_pred             HHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhHHH
Q 017963          127 DNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFV  206 (363)
Q Consensus       127 ~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~s~~~~~~G~~  206 (363)
                      .+.....|++++|++.++++.++.|+||++++++++|||++++++.++++.++|+.+...++.         .....|++
T Consensus       127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~---------~~~~~G~~  197 (350)
T PTZ00343        127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL---------HFTWLAFW  197 (350)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc---------hhHHHHHH
Confidence            455455999999999999999999999999999999999999999999999999988653221         12478999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH-HHHHhhcccccchh-------hhhhhcccch
Q 017963          207 WDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTT-IGVVVSKDFQGMKS-------EAKTFKGGVA  278 (363)
Q Consensus       207 l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~-vg~~~~g~~~~l~~-------e~~~f~~g~~  278 (363)
                      ++++|++.+++|..+.+...++...+.......+...+...++.+.++ +..+.++.  ....       +...+.....
T Consensus       198 ~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~--~~~~~~~~~~~~~~~~~~~~~  275 (350)
T PTZ00343        198 CAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGK--KWVPVWTNYTANMTNYTKGII  275 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHhhhcccccchHHH
Confidence            999999999999988766555431110011233444444455554444 22333321  1111       0111111111


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHH-HHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHh
Q 017963          279 SYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPI-TSIAAVILLHDPMSGFKILSLIVTFWGFGSYIY  353 (363)
Q Consensus       279 ~y~l~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv-~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y  353 (363)
                      .|  .++.+.+.+.+......-....++.+..++... ..|+ +.+++++++||+++..+++|.++++.|+..|.+
T Consensus       276 l~--~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~-lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~  348 (350)
T PTZ00343        276 IF--KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANT-LKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSL  348 (350)
T ss_pred             HH--HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH-HHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhh
Confidence            11  233344444443322222333445555665555 5566 559999999999999999999999999988754

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.78  E-value=6e-16  Score=145.14  Aligned_cols=253  Identities=18%  Similarity=0.118  Sum_probs=160.8

Q ss_pred             hhHHhHhcCCcchHHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHH
Q 017963           65 LSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAA  144 (363)
Q Consensus        65 l~r~y~~~gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~~~~Gll~~~~n~ly~~gL~ylpvst~s  144 (363)
                      ..|+..++ ....+..++.+...-++++.|.+..    + +++...++.   ....++....++.+|.+|++|+|++..+
T Consensus         7 ~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~~~----~-~~~~~~~~~---~~~~~~~~~l~~~~~~~a~~~~~~~~~~   77 (260)
T TIGR00950         7 VIGQYLEG-QVPLYFAVFRRLIFALLLLLPLLRR----R-PPLKRLLRL---LLLGALQIGVFYVLYFVAVKRLPVGEAA   77 (260)
T ss_pred             HHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHh----c-cCHhHHHHH---HHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence            34554444 3455566666655545555555432    1 111111222   2333445778888998999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 017963          145 LLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSEL  224 (363)
Q Consensus       145 li~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~s~~~~~~G~~l~L~Aa~l~gl~l~l~q~  224 (363)
                      ++.+++|+++++++.+++|||++++++.++++.++|++++..+++.        +.+..|+.+.+.|++.|+.+..+.  
T Consensus        78 ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~--------~~~~~G~~~~l~a~~~~a~~~~~~--  147 (260)
T TIGR00950        78 LLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNL--------SINPAGLLLGLGSGISFALGTVLY--  147 (260)
T ss_pred             HHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcc--------cccHHHHHHHHHHHHHHHHHHHHH--
Confidence            9999999999999999999999999999999999999887543311        235789999999999999977774  


Q ss_pred             HHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhcccchhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 017963          225 VFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFL  304 (363)
Q Consensus       225 ~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~~g~~~y~l~lv~tav~~q~~~lgv~glv~~  304 (363)
                        ||..++.+... ..+..+...++.+++..-....++.+..  +.+++   ....+..++.+.+.+.+...++..... 
T Consensus       148 --k~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~-  218 (260)
T TIGR00950       148 --KRLVKKEGPEL-LQFTGWVLLLGALLLLPFAWFLGPNPQA--LSLQW---GALLYLGLIGTALAYFLWNKGLTLVDP-  218 (260)
T ss_pred             --hHHhhcCCchH-HHHHHHHHHHHHHHHHHHHHhcCCCCCc--chHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCc-
Confidence              55543333221 1222234455555554333333322211  11111   112223455566666666555433333 


Q ss_pred             hhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 017963          305 ASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGF  348 (363)
Q Consensus       305 ~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~  348 (363)
                         -.++.+.....+++.+++++++||++++.+++|.++++.|.
T Consensus       219 ---~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       219 ---SAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence               23333333333445699999999999999999999999875

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.76  E-value=2.4e-15  Score=145.53  Aligned_cols=219  Identities=15%  Similarity=0.225  Sum_probs=150.1

Q ss_pred             HHHH-HHHHHHHHHhhcc-CChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCCc
Q 017963          121 GFLS-AADNLMYAYAYAY-LPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITD  198 (363)
Q Consensus       121 Gll~-~~~n~ly~~gL~y-lpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~s~  198 (363)
                      |+.. ..+..++..+++| +|++.++++.+++|+++++++++++|||++++++.++++.++|+.++..++.++      .
T Consensus        65 g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~------~  138 (299)
T PRK11453         65 GLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG------Q  138 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC------c
Confidence            4433 3444456688888 699999999999999999999999999999999999999999998875432111      1


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH-HHHHhhcccccchhhhhhhccc-
Q 017963          199 RQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTT-IGVVVSKDFQGMKSEAKTFKGG-  276 (363)
Q Consensus       199 ~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~-vg~~~~g~~~~l~~e~~~f~~g-  276 (363)
                      .....|+++++.|+++|++|..+.    ||..++.+....+.++++..+++..++. .+...+++. ....+...+... 
T Consensus       139 ~~~~~G~~l~l~aal~~a~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  213 (299)
T PRK11453        139 HVAMLGFMLTLAAAFSWACGNIFN----KKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSA-TMIHSLVTIDMTT  213 (299)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHH----HHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCch-hhhhhhccCCHHH
Confidence            123579999999999999988886    4443333333455666677766665554 343444321 111100111100 


Q ss_pred             -chhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHH-HHHHHHhCCCCchhHHHHHHHHHHHHHHHHhc
Q 017963          277 -VASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITS-IAAVILLHDPMSGFKILSLIVTFWGFGSYIYG  354 (363)
Q Consensus       277 -~~~y~l~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~-ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y~  354 (363)
                       ...-|+.++.+++.|.+...++..+.....+.+     +...|+.+ +++++++||+++..+++|+++++.|...-.++
T Consensus       214 ~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~-----~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        214 ILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPL-----SLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence             112233567777777777666555544323332     23558855 99999999999999999999999999887776


Q ss_pred             c
Q 017963          355 N  355 (363)
Q Consensus       355 ~  355 (363)
                      +
T Consensus       289 ~  289 (299)
T PRK11453        289 L  289 (299)
T ss_pred             h
Confidence            6

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.75  E-value=6.7e-18  Score=159.61  Aligned_cols=264  Identities=15%  Similarity=0.229  Sum_probs=196.3

Q ss_pred             HHHHHHHhhhhHHHHHHHhhccccccCCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHH
Q 017963           78 WIISWVAVAGWPLTALILLPTYFVFKTFPT-PLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTL  156 (363)
Q Consensus        78 w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~-~~~~~l~~~~~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftal  156 (363)
                      =+.|+.|......--+++. ... .+.+++ |...+...+ +.+-.....||+.+.+.   +|...+.++++..++.||+
T Consensus        34 NLITFaqFlFia~eGlif~-skf-~~~k~kiplk~Y~i~V-~mFF~vnv~NN~al~f~---I~~PlHiIfRsgsll~nM~  107 (330)
T KOG1583|consen   34 NLITFAQFLFIATEGLIFT-SKF-FTVKPKIPLKDYAITV-AMFFIVNVTNNYALKFN---IPMPLHIIFRSGSLLANMI  107 (330)
T ss_pred             eehHHHHHHHHHHhceeee-ccc-cccCCCCchhhhheeh-heeeeeeeeccceeeec---ccceEEEEEecCcHHHHHH
Confidence            6889999887777655444 111 112233 433333323 22333455566544333   5788899999999999999


Q ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCC------CCC----CcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017963          157 FGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRY------GNI----TDRQYIMGFVWDILGSALHGLIFALSELVF  226 (363)
Q Consensus       157 fs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~------~~~----s~~~~~~G~~l~L~Aa~l~gl~l~l~q~~~  226 (363)
                      .+++++|+|++.+|+.|+++.|+|+++-.+.++.|..      +.+    +.....+|+.+...|.++.+...+..|.+|
T Consensus       108 ~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y  187 (330)
T KOG1583|consen  108 LGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTY  187 (330)
T ss_pred             HHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998876555543321      111    122346899999999999999999999999


Q ss_pred             HHhhccccchhHHHHHHHHHHHHHHHHHH-HHHhhcccccchh----hhhhhcccchhHHHHHHHHHHHHHHHHHhhhhh
Q 017963          227 VKLVGRRSFHVVLEQQVMVSLFAFAFTTI-GVVVSKDFQGMKS----EAKTFKGGVASYYLVLIWGAITFQLGVLGGTAV  301 (363)
Q Consensus       227 kkv~~~~~~~~vle~q~~~~l~a~~~~~v-g~~~~g~~~~l~~----e~~~f~~g~~~y~l~lv~tav~~q~~~lgv~gl  301 (363)
                      ||++|+     .-|..+|.++...+.+++ +.=+..+|.....    +.+...--.+.-+..+..+.+++..|.-|+.-+
T Consensus       188 ~kyGKh-----~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L  262 (330)
T KOG1583|consen  188 QKYGKH-----WKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYIL  262 (330)
T ss_pred             HHhcCC-----hHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhh
Confidence            999876     489999999999988874 2222222322111    011111112455566889999999999999999


Q ss_pred             hhhhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q 017963          302 LFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYI  352 (363)
Q Consensus       302 v~~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~  352 (363)
                      ...++||..+++.++++-++.+++++.|.++|+++.++|.++++.|...|.
T Consensus       263 ~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa  313 (330)
T KOG1583|consen  263 TTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA  313 (330)
T ss_pred             hceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999993

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.75  E-value=8e-15  Score=141.39  Aligned_cols=280  Identities=15%  Similarity=0.096  Sum_probs=176.0

Q ss_pred             hhHHHHHHHHHHHHhcchhhhhhhHHhHhcCCcchHHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHHHHHHH
Q 017963           43 SHWILLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGF  122 (363)
Q Consensus        43 ~~~~~~~~~~~~~~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~~~~Gl  122 (363)
                      |..+-++...+.+.+=-....+..|.-.+  +-+.+..++.....--++++|++...   +++ . .+++.+......|.
T Consensus         4 ~~~~~~~~~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~---~~~-~-~~~~~~~~~~~~g~   76 (292)
T PRK11272          4 RQLLPLFGALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLLAFLLLR---GHP-L-PTLRQWLNAALIGL   76 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHh---CCC-C-CcHHHHHHHHHHHH
Confidence            33444455555555555667778886554  55667777777776555555655421   111 1 12333333455666


Q ss_pred             HH-HHHHHHHHHhh-ccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcch
Q 017963          123 LS-AADNLMYAYAY-AYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQ  200 (363)
Q Consensus       123 l~-~~~n~ly~~gL-~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~s~~~  200 (363)
                      +. ...+.++.++. +++|++.++++..++|+++++++.+ +|||++++++.|+++.++|+.++..+++.        +.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~--------~~  147 (292)
T PRK11272         77 LLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL--------SG  147 (292)
T ss_pred             HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc--------cc
Confidence            54 45566777888 9999999999999999999999986 69999999999999999998887543221        12


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH-HHHHhhcccccchhhhhhhcccchh
Q 017963          201 YIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTT-IGVVVSKDFQGMKSEAKTFKGGVAS  279 (363)
Q Consensus       201 ~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~-vg~~~~g~~~~l~~e~~~f~~g~~~  279 (363)
                      ...|+++.++|+++|++|...    .||..++++ ....-+|.   .++...+. .....++++... .+.+.+   ...
T Consensus       148 ~~~G~l~~l~a~~~~a~~~~~----~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~i  215 (292)
T PRK11272        148 NPWGAILILIASASWAFGSVW----SSRLPLPVG-MMAGAAEM---LAAGVVLLIASLLSGERLTAL-PTLSGF---LAL  215 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHH----HHhcCCCcc-hHHHHHHH---HHHHHHHHHHHHHcCCccccc-CCHHHH---HHH
Confidence            457999999999999997766    455533322 22222332   33333222 332222222111 111111   112


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHH-HHHHHHhCCCCchhHHHHHHHHHHHHHHHHhcc
Q 017963          280 YYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITS-IAAVILLHDPMSGFKILSLIVTFWGFGSYIYGN  355 (363)
Q Consensus       280 y~l~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~-ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y~~  355 (363)
                      .++.++.+++.+.+...++..+.....+++     ...-|+.+ +++++++||+++..+++|.++++.|.......+
T Consensus       216 ~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~-----~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~  287 (292)
T PRK11272        216 GYLAVFGSIIAISAYMYLLRNVRPALATSY-----AYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK  287 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-----HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            333556677777666665443333222222     22457755 999999999999999999999999987765543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.69  E-value=2.3e-14  Score=138.60  Aligned_cols=210  Identities=9%  Similarity=0.040  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 017963          118 IVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNIT  197 (363)
Q Consensus       118 ~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~s  197 (363)
                      ...++..+.++.+|.+|++++|++.++++..+.|+++++++++++|||++++++.++++.++|++++..++ ++      
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~-~~------  149 (296)
T PRK15430         77 AVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTF-GS------  149 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc-CC------
Confidence            34566688899999999999999999999999999999999999999999999999999999998875332 11      


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhcccc
Q 017963          198 DRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGV  277 (363)
Q Consensus       198 ~~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~~g~  277 (363)
                         .   ....++|+++|++|..+.    ||..++... .......|...++.+. .... ...+......  ..+. ..
T Consensus       150 ---~---~~~~l~aa~~~a~~~i~~----r~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~--~~~~-~~  213 (296)
T PRK15430        150 ---L---PIIALGLAFSFAFYGLVR----KKIAVEAQT-GMLIETMWLLPVAAIY-LFAI-ADSSTSHMGQ--NPMS-LN  213 (296)
T ss_pred             ---c---cHHHHHHHHHHHHHHHHH----HhcCCCCch-hHHHHHHHHHHHHHHH-HHHH-ccCCcccccC--CcHH-HH
Confidence               0   145777899999988763    444222222 1222223333333222 1111 1111100000  0010 00


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHH-HHHHHHHhCCCCchhHHHHHHHHHHHHHHHHhcc
Q 017963          278 ASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPIT-SIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGN  355 (363)
Q Consensus       278 ~~y~l~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~-~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y~~  355 (363)
                      ..++...+.+.+.+.+...+.........+++..     ..|+. .+++++++||++++.+.+|+++++.|......+.
T Consensus       214 ~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~-----l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~  287 (296)
T PRK15430        214 LLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQY-----IGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA  287 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            1122222345566666555544444443333333     55774 4999999999999999999999999988886554

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.67  E-value=2.6e-13  Score=131.03  Aligned_cols=255  Identities=11%  Similarity=0.060  Sum_probs=158.7

Q ss_pred             hhHHhHhcCCcchHHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHH
Q 017963           65 LSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAA  144 (363)
Q Consensus        65 l~r~y~~~gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~~~~Gll~~~~n~ly~~gL~ylpvst~s  144 (363)
                      ..|+-+++  -..+...+.....--+++.+++.   +++.+   ..+|........|+..+..+.++.++++|+|++.++
T Consensus        30 ~~K~~~~~--~~~~~~~~~R~~~a~l~l~~~~~---~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~  101 (293)
T PRK10532         30 LAKSLFPL--VGAPGVTALRLALGTLILIAIFK---PWRLR---FAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAV  101 (293)
T ss_pred             HHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHh---HHhcc---CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            57766664  44455666665554444444432   11111   112222223445777788888888999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 017963          145 LLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSEL  224 (363)
Q Consensus       145 li~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~s~~~~~~G~~l~L~Aa~l~gl~l~l~q~  224 (363)
                      ++..++|+++++++    +||.++.  .++.+..+|+.++...+.+      .+.....|+++.++|+++|+.|..+.  
T Consensus       102 ~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~------~~~~~~~G~ll~l~aa~~~a~~~v~~--  167 (293)
T PRK10532        102 ALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQD------VSHVDLTGAALALGAGACWAIYILSG--  167 (293)
T ss_pred             HHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCC------cccCChHHHHHHHHHHHHHHHHHHHH--
Confidence            99999999999887    3665544  4566778898776432211      11224679999999999999988775  


Q ss_pred             HHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhcccchhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 017963          225 VFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFL  304 (363)
Q Consensus       225 ~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~~g~~~y~l~lv~tav~~q~~~lgv~glv~~  304 (363)
                        ||..++++...+    .+..+++..++.......++  ....+...+   ...-++.++.+++.|.+...++......
T Consensus       168 --r~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~---~~~l~lgv~~t~~~~~l~~~~~~~~~a~  236 (293)
T PRK10532        168 --QRAGAEHGPATV----AIGSLIAALIFVPIGALQAG--EALWHWSIL---PLGLAVAILSTALPYSLEMIALTRLPTR  236 (293)
T ss_pred             --HHHhccCCchHH----HHHHHHHHHHHHHHHHHccC--cccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence              555444332222    23334444433322222221  111111111   0123556778888887777775555554


Q ss_pred             hhhhhHHHHHHhhHHHHH-HHHHHHhCCCCchhHHHHHHHHHHHHHHHHhcccC
Q 017963          305 ASTVLAGILNAIRVPITS-IAAVILLHDPMSGFKILSLIVTFWGFGSYIYGNSS  357 (363)
Q Consensus       305 ~ssL~a~vi~~~~lPv~~-ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y~~~~  357 (363)
                      ..+++..     ..|+.+ +++++++||++++.+++|+++++.|...+...+-+
T Consensus       237 ~as~~~~-----l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~  285 (293)
T PRK10532        237 TFGTLMS-----MEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR  285 (293)
T ss_pred             HHHHHHH-----hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3333333     567755 99999999999999999999999999988655533

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.66  E-value=1.2e-13  Score=133.60  Aligned_cols=214  Identities=12%  Similarity=0.027  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHHhhc----cCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCC-
Q 017963          121 GFLSAADNLMYAYAYA----YLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGN-  195 (363)
Q Consensus       121 Gll~~~~n~ly~~gL~----ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~-  195 (363)
                      ++....++.++..++.    .+|++..+++.+++|+|+++++++++|||++++++.++++.++|++++..++.+.+..+ 
T Consensus        68 ~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~  147 (295)
T PRK11689         68 GLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAEL  147 (295)
T ss_pred             hHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhh
Confidence            4445566665555654    47888899999999999999999999999999999999999999988765432111000 


Q ss_pred             -CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhc
Q 017963          196 -ITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFK  274 (363)
Q Consensus       196 -~s~~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~  274 (363)
                       .+..+...|+++.+.|+++|++|..+.    ||..++.+..   .+..   ..+.+.+......++++ ...-+.+.+ 
T Consensus       148 ~~~~~~~~~G~~~~l~aa~~~A~~~v~~----k~~~~~~~~~---~~~~---~~~~~~l~~~~~~~~~~-~~~~~~~~~-  215 (295)
T PRK11689        148 INNIASNPLSYGLAFIGAFIWAAYCNVT----RKYARGKNGI---TLFF---ILTALALWIKYFLSPQP-AMVFSLPAI-  215 (295)
T ss_pred             hhccccChHHHHHHHHHHHHHHHHHHHH----hhccCCCCch---hHHH---HHHHHHHHHHHHHhcCc-cccCCHHHH-
Confidence             111234579999999999999988875    5554443322   2221   11222222222233322 111111111 


Q ss_pred             ccchhHHH-HHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHH-HHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q 017963          275 GGVASYYL-VLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITS-IAAVILLHDPMSGFKILSLIVTFWGFGSYI  352 (363)
Q Consensus       275 ~g~~~y~l-~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~-ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~  352 (363)
                          .+.. ..+.+.+.|.+...++........+++.+     ..|+.+ +++++++||+++..+++|+++++.|.....
T Consensus       216 ----~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~-----l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        216 ----IKLLLAAAAMGFGYAAWNVGILHGNMTLLATASY-----FTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW  286 (295)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH-----hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence                1111 11245555555555544444433333333     567755 999999999999999999999999987764


Q ss_pred             hcc
Q 017963          353 YGN  355 (363)
Q Consensus       353 y~~  355 (363)
                      ..+
T Consensus       287 ~~~  289 (295)
T PRK11689        287 LAT  289 (295)
T ss_pred             hhH
Confidence            433

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.65  E-value=7.3e-15  Score=144.10  Aligned_cols=234  Identities=15%  Similarity=0.197  Sum_probs=174.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCC
Q 017963          112 KLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSD  191 (363)
Q Consensus       112 ~l~~~~~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~  191 (363)
                      +..-++..+..+..+-|+.|+.+|+|+++++.+++.++.-.||..++.++..||+|..|+.++.+.+.|++++..+++.+
T Consensus       157 ~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  157 QTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            44555777889999999999999999999999999999999999999999999999999999999999998887766533


Q ss_pred             CCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHH---HHHhhcc--cccc
Q 017963          192 RYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTI---GVVVSKD--FQGM  266 (363)
Q Consensus       192 ~~~~~s~~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~v---g~~~~g~--~~~l  266 (363)
                       .++....+..+|+++++.+|++||+|..+    .||-..++.  .=+++|.+.++++..=+++   .+++-.-  ++..
T Consensus       237 -~~~~~a~~~llG~llaL~sA~~YavY~vl----lk~~~~~eg--~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F  309 (416)
T KOG2765|consen  237 -NSDLPASRPLLGNLLALLSALLYAVYTVL----LKRKIGDEG--ERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERF  309 (416)
T ss_pred             -cccCCccchhHHHHHHHHHHHHHHHHHHH----HHhhccccc--ccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcc
Confidence             23445677899999999999999999998    455444441  1356677777666543332   2222111  1111


Q ss_pred             hhhhhhhcccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 017963          267 KSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFW  346 (363)
Q Consensus       267 ~~e~~~f~~g~~~y~l~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~  346 (363)
                        |...-.+...-....++.|+++=.++..+    ..++|++.+.+-+++-+|+..+.-+++=|.++++..++|.+.++.
T Consensus       310 --~lP~~~q~~~vv~~~ligtvvSDylW~~a----~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv  383 (416)
T KOG2765|consen  310 --ELPSSTQFSLVVFNNLIGTVVSDYLWAKA----VLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFV  383 (416)
T ss_pred             --cCCCCceeEeeeHhhHHHHHHHHHHHHHH----HHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence              11111111112223477777765554444    345688888888999999999999998899999999999999999


Q ss_pred             HHHHHHhcccCC
Q 017963          347 GFGSYIYGNSST  358 (363)
Q Consensus       347 G~~~y~y~~~~~  358 (363)
                      ||..-.|....+
T Consensus       384 ~Fv~vn~~~~~~  395 (416)
T KOG2765|consen  384 GFVIVNISSENS  395 (416)
T ss_pred             HHhheecccccc
Confidence            999987765433

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.65  E-value=1.2e-13  Score=132.33  Aligned_cols=214  Identities=12%  Similarity=0.023  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 017963          116 AYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGN  195 (363)
Q Consensus       116 ~~~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~  195 (363)
                      ..+..|+..+..+.++..++++.|++..+.+..++|+++++++++++|||++++++.|+++.+.|+.++..+++.+    
T Consensus        65 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~----  140 (281)
T TIGR03340        65 LLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQ----  140 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccc----
Confidence            3455666778888888899999999999999999999999999999999999999999999999998876543211    


Q ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-hhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhc
Q 017963          196 ITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSF-HVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFK  274 (363)
Q Consensus       196 ~s~~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~-~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~  274 (363)
                          ....|+.+.+.++++|++|..+.    ||..++.+. ........+.......++..-....++ +....+...  
T Consensus       141 ----~~~~g~~~~l~aal~~a~~~i~~----k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--  209 (281)
T TIGR03340       141 ----HRRKAYAWALAAALGTAIYSLSD----KAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHG-RSMFPYARQ--  209 (281)
T ss_pred             ----cchhHHHHHHHHHHHHHHhhhhc----cccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhc-cchhhhHHH--
Confidence                12358888999999999988764    333221111 111111222222221222221111222 111110000  


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHH-HHHHHHhCCCCchhHHHHHHHHHHHHHH
Q 017963          275 GGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITS-IAAVILLHDPMSGFKILSLIVTFWGFGS  350 (363)
Q Consensus       275 ~g~~~y~l~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~-ilAvl~f~d~~~~~k~ig~~lvl~G~~~  350 (363)
                      .. ..-+...+.+.+.|.+...++...-....+.+.+     ..|+.. +++++++||+++..+++|+++++.|...
T Consensus       210 ~~-~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~-----l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       210 IL-PSATLGGLMIGGAYALVLWAMTRLPVATVVALRN-----TSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecc-----cHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            00 1122334555566655554433332221111222     347754 9999999999999999999999999764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.55  E-value=2.6e-11  Score=113.76  Aligned_cols=210  Identities=19%  Similarity=0.223  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHH-HHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 017963          118 IVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGY-FLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNI  196 (363)
Q Consensus       118 ~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~-~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~  196 (363)
                      +..++..+..+.+|..+++|+|++.++++.++.|+++++++. +++|||+++.++.++++.+.|+.++..++..+.    
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~----  149 (292)
T COG0697          74 LLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG----  149 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch----
Confidence            344566888889999999999999999999999999999996 777999999999999999999999866654421    


Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHH-HHHHHHHHHHHHHHHHHHhhcccccchhhhhhhcc
Q 017963          197 TDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLE-QQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKG  275 (363)
Q Consensus       197 s~~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle-~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~~  275 (363)
                       .. +..|+.+.+.+++.++++....    |++. +.+.....- ++.   . ............ +.+ .+.+...+  
T Consensus       150 -~~-~~~g~~~~l~a~~~~a~~~~~~----~~~~-~~~~~~~~~~~~~---~-~~~~~~~~~~~~-~~~-~~~~~~~~--  214 (292)
T COG0697         150 -IL-SLLGLLLALAAALLWALYTALV----KRLS-RLGPVTLALLLQL---L-LALLLLLLFFLS-GFG-APILSRAW--  214 (292)
T ss_pred             -hH-HHHHHHHHHHHHHHHHHHHHHH----HHhc-CCChHHHHHHHHH---H-HHHHHHHHHHhc-ccc-ccCCHHHH--
Confidence             01 6899999999999999966664    5443 222111111 221   1 111111111111 111 11111111  


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH--hhHHHHH-HHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q 017963          276 GVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNA--IRVPITS-IAAVILLHDPMSGFKILSLIVTFWGFGSYI  352 (363)
Q Consensus       276 g~~~y~l~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~--~~lPv~~-ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~  352 (363)
                       ...-+..++.+.+.+.+...++....       +..+..  ...|+.+ +.+++++||+++..+.+|.++++.|.....
T Consensus       215 -~~~~~~g~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~  286 (292)
T COG0697         215 -LLLLYLGVFSTGLAYLLWYYALRLLG-------ASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS  286 (292)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhcC-------chHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence             00111122233233333333321111       222211  3457755 669999999999999999999999998887


Q ss_pred             hc
Q 017963          353 YG  354 (363)
Q Consensus       353 y~  354 (363)
                      +.
T Consensus       287 ~~  288 (292)
T COG0697         287 LR  288 (292)
T ss_pred             cc
Confidence            66

>TIGR00688 rarD rarD protein

Probab=99.47  E-value=3.1e-11  Score=113.93  Aligned_cols=146  Identities=11%  Similarity=0.050  Sum_probs=101.2

Q ss_pred             hhhhhhhHHhHhcCCcchHHHHHHHhh-hhHHHHHHHhhcccccc---CCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHh
Q 017963           60 PASSLLSRVYYANGGTSKWIISWVAVA-GWPLTALILLPTYFVFK---TFPTPL-DLKLTLAYIVLGFLSAADNLMYAYA  134 (363)
Q Consensus        60 ~~~~Ll~r~y~~~gg~~~w~~t~vq~a-g~p~l~~p~~~~~~~~~---~~~~~~-~~~l~~~~~~~Gll~~~~n~ly~~g  134 (363)
                      ....+..|+.  . +-+.+..++.... +.+++ .++...+++++   ++.++. .++........|+..+.++.+|.++
T Consensus        15 g~~~~~~k~~--~-~~~~~~i~~~R~~~a~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a   90 (256)
T TIGR00688        15 GYMYYYSKLL--K-PLPATDILGHRMIWSFPFM-LLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWA   90 (256)
T ss_pred             HHHHHHHHHh--c-cCCHHHHHHHHHHHHHHHH-HHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667752  2 2555666666654 34433 34332222111   111111 2222333456688889999999999


Q ss_pred             hccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 017963          135 YAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSAL  214 (363)
Q Consensus       135 L~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~s~~~~~~G~~l~L~Aa~l  214 (363)
                      ++|+|+++++++.++.|+|+++++.+++|||++++++.++++.++|++++..++ ++        ..    .+.++++++
T Consensus        91 ~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~-~~--------~~----~~~l~aa~~  157 (256)
T TIGR00688        91 VNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK-GS--------LP----WEALVLAFS  157 (256)
T ss_pred             HHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc-CC--------ch----HHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998875432 11        01    357889999


Q ss_pred             HHHHHHHH
Q 017963          215 HGLIFALS  222 (363)
Q Consensus       215 ~gl~l~l~  222 (363)
                      |++|....
T Consensus       158 ~a~~~i~~  165 (256)
T TIGR00688       158 FTAYGLIR  165 (256)
T ss_pred             HHHHHHHH
Confidence            99988774

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.37  E-value=7.9e-11  Score=113.38  Aligned_cols=224  Identities=20%  Similarity=0.255  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 017963          117 YIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNI  196 (363)
Q Consensus       117 ~~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~  196 (363)
                      .++.|+..+.|-.+-++++.|.|+|.|+...++.++|..+||.++--||+++.-...+.+...|..+....+.+      
T Consensus        87 ~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq------  160 (349)
T KOG1443|consen   87 LAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ------  160 (349)
T ss_pred             hhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc------
Confidence            35668899999999999999999999999999999999999999999999999999999988888887666543      


Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhh-hhhh
Q 017963          197 TDRQYIMGFVWDILGSALHGLIFALSELVFVKLV--GRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSE-AKTF  273 (363)
Q Consensus       197 s~~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~--~~~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e-~~~f  273 (363)
                         =...|+.++++|+++.|+-++..|...+|--  ++.+..++..+|-++++   ..+..++..||.......+ .+.+
T Consensus       161 ---f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~---~Ll~~~l~fEG~~~~~~s~~f~~~  234 (349)
T KOG1443|consen  161 ---FNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSI---GLLPLSLLFEGLHLITSSSIFRFQ  234 (349)
T ss_pred             ---eeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHH---HHHHHHHHHcccccchhhhHHHhc
Confidence               2588999999999999999999999998853  45566777777755543   3444677788864433222 2222


Q ss_pred             cccchhHHHHHH--HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Q 017963          274 KGGVASYYLVLI--WGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSY  351 (363)
Q Consensus       274 ~~g~~~y~l~lv--~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y  351 (363)
                      ..+...-++..+  +...++.. -..-.-+...+++++.++.-..--..+.++|++..+|.++...+.|+.+++.|...|
T Consensus       235 d~~~~~rv~g~i~l~g~laF~l-~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  235 DTGLILRVIGLISLGGLLAFLL-EFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             CccHHHHHHHHHHHHHHHHHHH-HHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            222221111111  11111111 011122333455666555544444556688899999999999999999999999998


Q ss_pred             Hh
Q 017963          352 IY  353 (363)
Q Consensus       352 ~y  353 (363)
                      -+
T Consensus       314 ~~  315 (349)
T KOG1443|consen  314 RN  315 (349)
T ss_pred             cc
Confidence            33

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.34  E-value=8.8e-10  Score=106.81  Aligned_cols=222  Identities=14%  Similarity=0.148  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHh-hhhHHHHHHHHHHhcccccHHH----HHHHHHHHHHHHHhh
Q 017963          111 LKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLAS-SSLVFSTLFGYFLVKNKLNAAM----INAVVIITAAMTIIA  185 (363)
Q Consensus       111 ~~l~~~~~~~Gll~~~~n~ly~~gL~ylpvst~sli~s-sql~Ftalfs~~ilkek~t~~~----i~svvllt~Gavll~  185 (363)
                      ++.+..++..|+..+..|+.|..+.+|+.++++..+.+ .|++++++++.+++|||.|+++    +.|+++..+|+++++
T Consensus        56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~  135 (290)
T TIGR00776        56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS  135 (290)
T ss_pred             cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence            67777789999999999999999999999999999999 9999999999999999999999    999999999998886


Q ss_pred             ccCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 017963          186 LDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQG  265 (363)
Q Consensus       186 ~~~~~~~~~~~s~~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~  265 (363)
                      .+++++.. +.+..++..|.++.+.+++.|++|....+..     + ++.....-.|.+.-+++........ .  +.+.
T Consensus       136 ~~~~~~~~-~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~-----~-~~~~~~~~~~~~g~~~~~~~~~~~~-~--~~~~  205 (290)
T TIGR00776       136 RSKDKSAG-IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF-----G-VDGLSVLLPQAIGMVIGGIIFNLGH-I--LAKP  205 (290)
T ss_pred             eccccccc-cccccchhhHHHHHHHHHHHHHHHHHHHHHc-----C-CCcceehhHHHHHHHHHHHHHHHHH-h--cccc
Confidence            65433211 0111234569999999999999999997532     2 2211121123332222222222111 1  1011


Q ss_pred             chhhhhhhcccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHH-HHHHHHhCCCCchhHH----HH
Q 017963          266 MKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITS-IAAVILLHDPMSGFKI----LS  340 (363)
Q Consensus       266 l~~e~~~f~~g~~~y~l~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~-ilAvl~f~d~~~~~k~----ig  340 (363)
                      ...+ ..+    ......++| .+.+.....+..+   ....-.+.+++... |+++ +.+++++||+.+..+.    +|
T Consensus       206 ~~~~-~~~----~~~~~Gi~~-~ia~~~y~~~~~~---~~~~~~~~~ls~~~-pvia~~~~v~~l~E~~~~~~~~~~~iG  275 (290)
T TIGR00776       206 LKKY-AIL----LNILPGLMW-GIGNFFYLFSAQP---KVGVATSFSLSQLG-VIISTLGGILILGEKKTKREMIAISVG  275 (290)
T ss_pred             hHHH-HHH----HHHHHHHHH-HHHHHHHHHHccc---ccchhhHHHHHHHH-HHHHHHHHHHHhccCCCcceeehhHHH
Confidence            1110 000    011112222 4444444455442   11222244444444 6654 9999999999999999    99


Q ss_pred             HHHHHHHHHHHH
Q 017963          341 LIVTFWGFGSYI  352 (363)
Q Consensus       341 ~~lvl~G~~~y~  352 (363)
                      .++++.|...-.
T Consensus       276 ~~lIi~~~~l~~  287 (290)
T TIGR00776       276 IILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHHHh
Confidence            999998877643

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.34  E-value=2.4e-10  Score=109.60  Aligned_cols=217  Identities=15%  Similarity=0.112  Sum_probs=148.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCC
Q 017963          110 DLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSD  189 (363)
Q Consensus       110 ~~~l~~~~~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~  189 (363)
                      .+|.+....+.+++++.|-++|.++.+.=-+-.+|+=+-..|+++.+++.+++|||+++.|+.+++++++|+....++.+
T Consensus        68 ~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g  147 (293)
T COG2962          68 QPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG  147 (293)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence            34666777889999999999999999987777889999999999999999999999999999999999999998888776


Q ss_pred             CCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHHHHHHHHHHhhccccc-ch
Q 017963          190 SDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRS-FHVVLEQQVMVSLFAFAFTTIGVVVSKDFQG-MK  267 (363)
Q Consensus       190 ~~~~~~~s~~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~-~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~-l~  267 (363)
                      +-.             ..+++=|..||+|..+     ||..+-.. ....+|+...     .+++++.++...|-++ ..
T Consensus       148 ~lp-------------wval~la~sf~~Ygl~-----RK~~~v~a~~g~~lE~l~l-----~p~al~yl~~l~~~~~~~~  204 (293)
T COG2962         148 SLP-------------WVALALALSFGLYGLL-----RKKLKVDALTGLTLETLLL-----LPVALIYLLFLADSGQFLQ  204 (293)
T ss_pred             CCc-------------HHHHHHHHHHHHHHHH-----HHhcCCchHHhHHHHHHHH-----hHHHHHHHHHHhcCchhhh
Confidence            531             3445557889999988     55545432 2355565532     3344444443333221 11


Q ss_pred             -hhhhhhcccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHH-HHHHHHHhCCCCchhHHHHHHHHH
Q 017963          268 -SEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPIT-SIAAVILLHDPMSGFKILSLIVTF  345 (363)
Q Consensus       268 -~e~~~f~~g~~~y~l~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~-~ilAvl~f~d~~~~~k~ig~~lvl  345 (363)
                       .+...+    ....+.=..|++.-.++..+...+...+-.++.+     .=|.. -++|+++|||+++..|.++-+.+-
T Consensus       205 ~~~~~~~----~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqY-----i~Ptl~fllav~i~~E~~~~~~~~~F~~IW  275 (293)
T COG2962         205 QNANSLW----LLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQY-----IEPTLMFLLAVLIFGEPFDSDQLVTFAFIW  275 (293)
T ss_pred             cCCchHH----HHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHH-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence             111011    0111122244444444444433333332233333     33664 499999999999999999999999


Q ss_pred             HHHHHHHhcccCC
Q 017963          346 WGFGSYIYGNSST  358 (363)
Q Consensus       346 ~G~~~y~y~~~~~  358 (363)
                      .|.+.|......+
T Consensus       276 ~aL~l~~~d~l~~  288 (293)
T COG2962         276 LALALFSIDGLYT  288 (293)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998887433

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.31  E-value=7.2e-11  Score=102.30  Aligned_cols=150  Identities=17%  Similarity=0.206  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhc--c-cchhH
Q 017963          204 GFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFK--G-GVASY  280 (363)
Q Consensus       204 G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~--~-g~~~y  280 (363)
                      |+++++.|+++.+++..+.|..+++..++......++++.+.+..+++.+....+..++++..+...+...  . .....
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            78999999999999999998888875333344568999999999999999977666655443332222111  1 13355


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHh
Q 017963          281 YLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIY  353 (363)
Q Consensus       281 ~l~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y  353 (363)
                      ...++.+.+.+.+.-+....++..+|++..+++..+..+++.++++++|||++|..+++|.++++.|...|.|
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            5567788888888888899999999999999999999999999999999999999999999999999999976

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.31  E-value=2.5e-10  Score=108.41  Aligned_cols=293  Identities=14%  Similarity=0.198  Sum_probs=214.7

Q ss_pred             CCchhHHHHHHHHHHHHhcchhhhhhhHHhHhcCCcc--hHHHHHHHhhhhHHHHHHHhhcccc-ccCCCCC-CcHHHHH
Q 017963           40 KPISHWILLVLSSAAMLVAFPASSLLSRVYYANGGTS--KWIISWVAVAGWPLTALILLPTYFV-FKTFPTP-LDLKLTL  115 (363)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~g~~~~~Ll~r~y~~~gg~~--~w~~t~vq~ag~p~l~~p~~~~~~~-~~~~~~~-~~~~l~~  115 (363)
                      .++.+|.--.+|+.-...+--.-.-+..+-|+..|=+  -|-.|++|..--...    .+.+++ -+.+++- ++|.   
T Consensus        36 s~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~----glie~~~~~~k~r~iP~rt---  108 (367)
T KOG1582|consen   36 SDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGF----GLIELQLIQTKRRVIPWRT---  108 (367)
T ss_pred             ccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhh----hheEEEeecccceecchhH---
Confidence            4556788888888888888888888899999987776  599999997654332    222222 1233331 2332   


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 017963          116 AYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGN  195 (363)
Q Consensus       116 ~~~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~  195 (363)
                       |..+..++.....+-+-++.|+.-.+-.++.+++++=+++.+.++-++|+.+.-..+..++.+|.++-.+.|+.-    
T Consensus       109 -Y~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~----  183 (367)
T KOG1582|consen  109 -YVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQT----  183 (367)
T ss_pred             -hhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccccc----
Confidence             333345555566677789999999999999999999999999999999999999999999999988877666542    


Q ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHhhccc-ccchhhhhhhc
Q 017963          196 ITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDF-QGMKSEAKTFK  274 (363)
Q Consensus       196 ~s~~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~-~~l~~e~~~f~  274 (363)
                       +..=..+|..+.-+|-.+=|++.=+.|..+|+.. ..    -+||.+|...++.++..+.+...||. +.+..-+   +
T Consensus       184 -sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~-~s----s~EmvfySy~iG~vflf~~mvlTge~f~a~~fca---e  254 (367)
T KOG1582|consen  184 -SPNFNLIGVMMISGALLADAVIGNVQEKAMKMNP-AS----SSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCA---E  254 (367)
T ss_pred             -CCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCC-CC----cceEEEeeecccHHHHHHHHHhcccchhhhHHHH---h
Confidence             2334578999999999999997777777776552 22    38999999999999999999999862 1111100   0


Q ss_pred             ccc-hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHh
Q 017963          275 GGV-ASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIY  353 (363)
Q Consensus       275 ~g~-~~y~l~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y  353 (363)
                      +.. ...|. +.....+| +....+..++..-..+.+-.+.+.++.++.+++.++|-.+||-.-.-++.+++.|+...+|
T Consensus       255 hp~~tyGy~-~~~s~~gy-lG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~y  332 (367)
T KOG1582|consen  255 HPVRTYGYA-FLFSLAGY-LGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMY  332 (367)
T ss_pred             CcHhHHHHH-HHHHHHhH-hhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcc
Confidence            111 11111 11111111 1223355666666777888899999999999999999999999999999999999999888


Q ss_pred             cc
Q 017963          354 GN  355 (363)
Q Consensus       354 ~~  355 (363)
                      .+
T Consensus       333 sk  334 (367)
T KOG1582|consen  333 SK  334 (367)
T ss_pred             cC
Confidence            87

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.25  E-value=1.2e-09  Score=104.24  Aligned_cols=297  Identities=14%  Similarity=0.163  Sum_probs=187.2

Q ss_pred             HHHHHHHHHHhcchhhhhhhHHhHhc--CC----cchHHHHHHHh-hhhHHHHHHHhhccccc-cC----------C-CC
Q 017963           47 LLVLSSAAMLVAFPASSLLSRVYYAN--GG----TSKWIISWVAV-AGWPLTALILLPTYFVF-KT----------F-PT  107 (363)
Q Consensus        47 ~~~~~~~~~~~g~~~~~Ll~r~y~~~--gg----~~~w~~t~vq~-ag~p~l~~p~~~~~~~~-~~----------~-~~  107 (363)
                      .++++.++++.| +.-+++.+.--..  +|    +...+++..-. .+|-.+..-.++..+.. +.          + ..
T Consensus         4 ~v~ls~imvvsG-s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~   82 (372)
T KOG3912|consen    4 RVFLSLIMVVSG-SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSS   82 (372)
T ss_pred             hhhhhhhhhhhc-cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccC
Confidence            356777777777 6778888766543  22    33455444433 23444433222211111 10          0 12


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhcc
Q 017963          108 PLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALD  187 (363)
Q Consensus       108 ~~~~~l~~~~~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~  187 (363)
                      |..+++++.=+++-  +....++| .|+.++++|++..++-.-++|+.+||.-+++++++.+||.|+.....|.++++..
T Consensus        83 pf~p~lfl~Pal~D--i~gsslm~-vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   83 PFNPVLFLPPALCD--IAGSSLMY-VGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             CCCcceecChHHHH--HhhhHHHH-HHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            44555544433333  55566788 9999999999999999999999999999999999999999999999999998765


Q ss_pred             CCCCC-CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH-H----HHHhhc
Q 017963          188 SDSDR-YGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTT-I----GVVVSK  261 (363)
Q Consensus       188 ~~~~~-~~~~s~~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~-v----g~~~~g  261 (363)
                      |-... .+....++.+.|+++.+.|.+..|....+-|    |..+++. ...++...|-++++...+. .    ..+..+
T Consensus       160 d~~~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Ee----k~l~~~n-V~pl~avg~eGlfG~v~~slL~i~m~yi~~~  234 (372)
T KOG3912|consen  160 DVHLVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEE----KQLKKSN-VAPLQAVGWEGLFGLVILSLLAIPMYYIPSG  234 (372)
T ss_pred             ecccccCCccccccchhhhHHHHHHHHHHHHHHHHHH----hhhhhcc-CCHHHHhhhhhhHHHHHHHHHHHHHhheecC
Confidence            43211 1223345568899999999999999666654    4443322 3456666666666643332 2    333344


Q ss_pred             c-cccchhh-hhh----hc--ccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHhCCCC
Q 017963          262 D-FQGMKSE-AKT----FK--GGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPM  333 (363)
Q Consensus       262 ~-~~~l~~e-~~~----f~--~g~~~y~l~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~  333 (363)
                      | +..-++. .++    |+  .+.+..++++..+.++-..+-..-..+.++.|+-.--+.-.++.-+.=+++...++|.|
T Consensus       235 ~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f  314 (372)
T KOG3912|consen  235 DSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYF  314 (372)
T ss_pred             CcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHH
Confidence            2 1111111 111    11  34455666676666554433333334445555555555555555555588888999999


Q ss_pred             chhHHHHHHHHHHHHHHHH
Q 017963          334 SGFKILSLIVTFWGFGSYI  352 (363)
Q Consensus       334 ~~~k~ig~~lvl~G~~~y~  352 (363)
                      ...|+.|.++.+.|...|.
T Consensus       315 ~llqilGFliLi~Gi~lY~  333 (372)
T KOG3912|consen  315 HLLQILGFLILIMGIILYN  333 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999983

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.21  E-value=8.6e-11  Score=115.13  Aligned_cols=296  Identities=12%  Similarity=0.123  Sum_probs=178.4

Q ss_pred             hHHHHHHHHHHHHhcchhhhhhhHHhHhc-CCcchHHHHHHHhhhhHHHH-HHHhhccccccCC--CCCCcHHHHHHHHH
Q 017963           44 HWILLVLSSAAMLVAFPASSLLSRVYYAN-GGTSKWIISWVAVAGWPLTA-LILLPTYFVFKTF--PTPLDLKLTLAYIV  119 (363)
Q Consensus        44 ~~~~~~~~~~~~~~g~~~~~Ll~r~y~~~-gg~~~w~~t~vq~ag~p~l~-~p~~~~~~~~~~~--~~~~~~~l~~~~~~  119 (363)
                      +.....+++.+=.+.+....+...+=.++ |.+-.|.-|.++.+---+.. ..-.+-.. ++.+  ++...++++-+   
T Consensus        14 ~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~-~~~~~~~~~~~~~llpl---   89 (316)
T KOG1441|consen   14 KILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLV-PPSKISSKLPLRTLLPL---   89 (316)
T ss_pred             hhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCC-CCCccccccchHHHHHH---
Confidence            45555555555555554444444444444 88888999988544332221 11111111 1111  12235555444   


Q ss_pred             HHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcc
Q 017963          120 LGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDR  199 (363)
Q Consensus       120 ~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~s~~  199 (363)
                       |+.......+=+.+++|.|+|.+..+.++.|+||.++++++.+|++++....+++....|+++-...+.         +
T Consensus        90 -~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~---------~  159 (316)
T KOG1441|consen   90 -GLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL---------S  159 (316)
T ss_pred             -HHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc---------c
Confidence             777888888888999999999999999999999999999999999999999999999999776544332         2


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHH--HHhhcccccchhhhhhhcccc
Q 017963          200 QYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIG--VVVSKDFQGMKSEAKTFKGGV  277 (363)
Q Consensus       200 ~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg--~~~~g~~~~l~~e~~~f~~g~  277 (363)
                      -+..|++.++++.+..++...+.+...++-  +++ ...++..-+.+-++...+++-  ...+++-. ...+.+.|+.. 
T Consensus       160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~--~~~-~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~-  234 (316)
T KOG1441|consen  160 FNLFGFISAMISNLAFALRNILSKKLLTSK--GES-LNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVT-  234 (316)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccc-cCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchh-
Confidence            369999999999999999666654444321  222 235566666655555544432  22223211 00011122211 


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHhcccC
Q 017963          278 ASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGNSS  357 (363)
Q Consensus       278 ~~y~l~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y~~~~  357 (363)
                        +...+......+ +.-+...-++..+|.+.=++....-=-++.+.++++|+|+.|+.++.|.++++.|...|.+-+.+
T Consensus       235 --~~~~~~~sv~~f-~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~  311 (316)
T KOG1441|consen  235 --FLILLLNSVLAF-LLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLK  311 (316)
T ss_pred             --hHHHHHHHHHHH-HHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence              111111111111 11122222223344444332222222334577888899999999999999999999998877765


Q ss_pred             CCCC
Q 017963          358 TPKD  361 (363)
Q Consensus       358 ~~~~  361 (363)
                      ++++
T Consensus       312 ~~~~  315 (316)
T KOG1441|consen  312 EKKG  315 (316)
T ss_pred             hhcc
Confidence            5443

>TIGR00803 nst UDP-galactose transporter

Probab=99.20  E-value=5.9e-10  Score=103.33  Aligned_cols=204  Identities=15%  Similarity=0.112  Sum_probs=118.9

Q ss_pred             HhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhHHHHHHHHH
Q 017963          133 YAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGS  212 (363)
Q Consensus       133 ~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~s~~~~~~G~~l~L~Aa  212 (363)
                      .++.+.++....+. +.|.+.++++...+++.|++..|+.++.++..|+.....++..+  +....++...|..+.++++
T Consensus        18 v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~--~~~~~g~~~~g~~~~l~a~   94 (222)
T TIGR00803        18 IALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSA--KTLMFGNPVVGLSAVLSAL   94 (222)
T ss_pred             HHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCc--cccccccHHHHHHHHHHHH
Confidence            55555555555555 66666666666666666666666666555555554443332221  1122346788888888888


Q ss_pred             HHHHHHHHHHHHHHHHhhccccc-hhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhcccchhHHHHHHHHHHHH
Q 017963          213 ALHGLIFALSELVFVKLVGRRSF-HVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITF  291 (363)
Q Consensus       213 ~l~gl~l~l~q~~~kkv~~~~~~-~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~~g~~~y~l~lv~tav~~  291 (363)
                      ...++    .....||..|++.- .+...++  ..++..+....+.... +.+..+.  ..+..|.......++.+...-
T Consensus        95 ~~~~~----~~~y~e~~~k~~~~~~~~~~~~--l~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~a~~  165 (222)
T TIGR00803        95 LSSGF----AGVYFEKILKDGDTMFWSRNLQ--LPLFGLFSTFSVLLWS-DGTLISN--FGFFIGYPTAVWIVGLLNVGG  165 (222)
T ss_pred             HHHhh----hHHHHHHcccCCCCchHHHHHH--HHHHHHHHHHHHHhhc-ccchhhc--cCcccCCchHHHHHHHHHHhc
Confidence            88888    44455555443211 1222222  2223333223333332 2222211  122233332222222222112


Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Q 017963          292 QLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSY  351 (363)
Q Consensus       292 q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y  351 (363)
                      +   .-+....++.+++..+++.+.++.++.++++++|||+++..+.+|..+++.|...|
T Consensus       166 ~---~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       166 G---LCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             C---ceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            2   33777888999999999999999999999999999999999999999999876654

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.17  E-value=1.7e-11  Score=116.08  Aligned_cols=283  Identities=16%  Similarity=0.085  Sum_probs=163.4

Q ss_pred             cCCCchhHHHHHHHHHHHHhcchhhhhhhHHhHhcCCcchHHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHH
Q 017963           38 KRKPISHWILLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAY  117 (363)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~  117 (363)
                      +.|+...-++..+++++...-......+.+-=-+++..|        ..+--+...|-.+.++..---|.+-.+++++ =
T Consensus        33 ~d~p~~gl~l~~vs~ff~~~~vv~t~~~e~~p~e~a~~r--------~l~~mlit~pcliy~~~~v~gp~g~R~~LiL-R  103 (346)
T KOG4510|consen   33 KDKPNLGLLLLTVSYFFNSCMVVSTKVLENDPMELASFR--------LLVRMLITYPCLIYYMQPVIGPEGKRKWLIL-R  103 (346)
T ss_pred             cCCCccCceehhhHHHHhhHHHhhhhhhccChhHhhhhh--------hhhehhhhheEEEEEeeeeecCCCcEEEEEe-e
Confidence            447888888888887776655554444443333334444        2222334445444443211011111111111 1


Q ss_pred             HHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCC--CCCC--
Q 017963          118 IVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSD--SDRY--  193 (363)
Q Consensus       118 ~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~--~~~~--  193 (363)
                      ...|  ...-..+| |++.|+|.+.+++|.-+.|.||.+|++.++|||+|++..++.++...|++++.-.+.  +|..  
T Consensus       104 g~mG--~tgvmlmy-ya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g  180 (346)
T KOG4510|consen  104 GFMG--FTGVMLMY-YALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEG  180 (346)
T ss_pred             hhhh--hhHHHHHH-HHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccc
Confidence            1223  34445678 999999999999999999999999999999999999999999999999998853332  1111  


Q ss_pred             CCCCc-chhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhh
Q 017963          194 GNITD-RQYIMGFVWDILGSAL-HGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAK  271 (363)
Q Consensus       194 ~~~s~-~~~~~G~~l~L~Aa~l-~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~  271 (363)
                      ++.+. .....|-..++.+... .+.|.++     |+++|+-++.+.  + -|.++++++..++|...-|+| .+|+.-+
T Consensus       181 ~~~s~~~~~~~gt~aai~s~lf~asvyIil-----R~iGk~~h~~ms--v-syf~~i~lV~s~I~~~~ig~~-~lP~cgk  251 (346)
T KOG4510|consen  181 EDSSQVEYDIPGTVAAISSVLFGASVYIIL-----RYIGKNAHAIMS--V-SYFSLITLVVSLIGCASIGAV-QLPHCGK  251 (346)
T ss_pred             cccccccccCCchHHHHHhHhhhhhHHHHH-----HHhhccccEEEE--e-hHHHHHHHHHHHHHHhhccce-ecCcccc
Confidence            11111 1224454444443332 3344444     788787665532  1 246778888888888877776 4665443


Q ss_pred             hhcccchhHHHHHH-HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHH-HHHHHHhCCCCchhHHHHHHHHHHHHH
Q 017963          272 TFKGGVASYYLVLI-WGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITS-IAAVILLHDPMSGFKILSLIVTFWGFG  349 (363)
Q Consensus       272 ~f~~g~~~y~l~lv-~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~-ilAvl~f~d~~~~~k~ig~~lvl~G~~  349 (363)
                      ++-     .+..+. ...+.+.+..+|+-.-..=     -.-+++....+.+ +..+++||+.+|++.++|+++++....
T Consensus       252 dr~-----l~~~lGvfgfigQIllTm~lQiErAG-----pvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v  321 (346)
T KOG4510|consen  252 DRW-----LFVNLGVFGFIGQILLTMGLQIERAG-----PVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTV  321 (346)
T ss_pred             ceE-----EEEEehhhhhHHHHHHHHHhhhhccC-----CeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHH
Confidence            331     111111 1111222222321111110     1112334556645 889999999999999999998875544


Q ss_pred             HH
Q 017963          350 SY  351 (363)
Q Consensus       350 ~y  351 (363)
                      .-
T Consensus       322 ~~  323 (346)
T KOG4510|consen  322 WV  323 (346)
T ss_pred             HH
Confidence            43

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.11  E-value=2e-09  Score=100.59  Aligned_cols=221  Identities=15%  Similarity=0.200  Sum_probs=153.7

Q ss_pred             HHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchh
Q 017963          122 FLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQY  201 (363)
Q Consensus       122 ll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~s~~~~  201 (363)
                      +-+.+...--+.+++|.|-.|..+=.+.+|+=+|++++++.++++.|.+-..+.+..+|+++..-.+..  -.+.+++..
T Consensus        93 ~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K--v~g~e~~t~  170 (337)
T KOG1580|consen   93 ASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK--VGGAEDKTF  170 (337)
T ss_pred             HHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc--cCCCccccc
Confidence            334444444457899999999999999999999999999999999999999999999998886544332  123455667


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhcccchhHH
Q 017963          202 IMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYY  281 (363)
Q Consensus       202 ~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~~g~~~y~  281 (363)
                      ..|-++.+.+-.+=|+-..+.+...+.+ ++..    -.|++++.+-+++.+.+|++..||-..+-+=.++  +....|-
T Consensus       171 g~GElLL~lSL~mDGlTg~~Qdrira~y-q~~g----~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~R--hP~~~~~  243 (337)
T KOG1580|consen  171 GFGELLLILSLAMDGLTGSIQDRIRASY-QRTG----TSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQR--HPYVFWD  243 (337)
T ss_pred             chHHHHHHHHHHhcccchhHHHHHHHhh-ccCc----hhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHh--ccHHHHH
Confidence            7899999999999999666655555444 3333    3455666666777788899998873222110111  1111222


Q ss_pred             HHHH--HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHH-Hhcc
Q 017963          282 LVLI--WGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSY-IYGN  355 (363)
Q Consensus       282 l~lv--~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y-~y~~  355 (363)
                      +++.  ..++.+...+..    +.+-+.+..+++.+-+...+.+.+|++|++++++.|++|.++++.++..= .+|+
T Consensus       244 l~l~ai~s~LGQ~fIF~t----v~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK  316 (337)
T KOG1580|consen  244 LTLLAIASCLGQWFIFKT----VEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK  316 (337)
T ss_pred             HHHHHHHHHhhhHHHHHH----HHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence            2222  222332222222    33345666788888899999999999999999999999999999887664 3443

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.86  E-value=7.4e-09  Score=86.49  Aligned_cols=73  Identities=26%  Similarity=0.469  Sum_probs=65.1

Q ss_pred             HHHHHHHHH-HHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCC
Q 017963          117 YIVLGFLSA-ADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDS  190 (363)
Q Consensus       117 ~~~~Gll~~-~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~  190 (363)
                      ++..|++.. .++.+|.++++|.| +..+.+.++.|+|+++++.+++|||++++++.++++.++|++++..++.+
T Consensus        37 ~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   37 LILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            344466665 88999999999999 58889999999999999999999999999999999999999999887754

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=4.9e-07  Score=88.02  Aligned_cols=278  Identities=12%  Similarity=0.169  Sum_probs=178.4

Q ss_pred             hhhhhhhHHhHhc-CCcchHHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 017963           60 PASSLLSRVYYAN-GGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYL  138 (363)
Q Consensus        60 ~~~~Ll~r~y~~~-gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~~~~Gll~~~~n~ly~~gL~yl  138 (363)
                      +.-++.-++-=++ +-++-...-++|.---.+.+.  ++- +-+--+.+|..++..--..+.-++..++-+.=..+++|+
T Consensus        25 ~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~--~lk-~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~l  101 (314)
T KOG1444|consen   25 ILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVL--VLK-RLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYL  101 (314)
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH--HHH-HhceeecCCcChHHHHHHccHHHHHHHHHHHcccccccc
Confidence            3334444444433 666666666777655444322  111 111122334333333334445677777777777899999


Q ss_pred             ChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhHHHHHHHHHHHHHHH
Q 017963          139 PASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLI  218 (363)
Q Consensus       139 pvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~s~~~~~~G~~l~L~Aa~l~gl~  218 (363)
                      |+++++++....++++++.-..++|.|+++..+.+++...+|+...+..|.+.         ...|..+.+..++.-+.+
T Consensus       102 nVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf---------~~~gY~w~~~n~~~~a~~  172 (314)
T KOG1444|consen  102 NVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSF---------NLRGYSWALANCLTTAAF  172 (314)
T ss_pred             CchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccccee---------cchhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988877766553         244889999999999987


Q ss_pred             HHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhcccchhHHHHHHHHH-----HHHHH
Q 017963          219 FALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGA-----ITFQL  293 (363)
Q Consensus       219 l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~~g~~~y~l~lv~ta-----v~~q~  293 (363)
                      ....    ||..+.... .-.++.+|-.+++.++..+=.+..|||+++..+-..+.+-.  .++.+....     ++|.-
T Consensus       173 ~v~~----kk~vd~~~l-~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~--~~~~~~lScv~gf~isy~s  245 (314)
T KOG1444|consen  173 VVYV----KKSVDSANL-NKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSS--VLVVMLLSCVMGFGISYTS  245 (314)
T ss_pred             HHHH----HHhhccccc-cceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchh--HHHHHHHHHHHHHHHHHHH
Confidence            7774    555443321 12356677888999998887888888874433322222111  111111111     11111


Q ss_pred             HHHhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHhcccCCCCC
Q 017963          294 GVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGNSSTPKD  361 (363)
Q Consensus       294 ~~lgv~glv~~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y~~~~~~~~  361 (363)
                      .+-     .-..|++.-.++-+.=+-.+.+..++++|.++++...+|..+.+.|-..|.|..++|+|.
T Consensus       246 ~~c-----t~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~  308 (314)
T KOG1444|consen  246 FLC-----TRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQ  308 (314)
T ss_pred             HHH-----HhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence            100     001133333334433345566777888899999999999999999999999988665543

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.80  E-value=3.9e-06  Score=79.55  Aligned_cols=263  Identities=13%  Similarity=0.105  Sum_probs=156.9

Q ss_pred             HHHHHHHHHHHHhcchhhhhhhHHhHhcCCcchHHHHHHHhhhhHHHHHHHhhccccccCC-CCCCcHHHHHHHHHHHHH
Q 017963           45 WILLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTF-PTPLDLKLTLAYIVLGFL  123 (363)
Q Consensus        45 ~~~~~~~~~~~~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~-~~~~~~~l~~~~~~~Gll  123 (363)
                      -+.+.+++..+=.|.+.+..|    |.+-|  .|-.|++..+-=.+++++++   |+.|++ .++-++.++.+    |+-
T Consensus        14 ~~~ll~amvsiq~Gas~Ak~L----FP~vG--~~g~t~lRl~~aaLIll~l~---RPwr~r~~~~~~~~~~~y----Gvs   80 (292)
T COG5006          14 ILALLVAMVSIQSGASFAKSL----FPLVG--AAGVTALRLAIAALILLALF---RPWRRRLSKPQRLALLAY----GVS   80 (292)
T ss_pred             HHHHHHHHHHHHhhHHHHHHH----ccccC--hhhHHHHHHHHHHHHHHHHh---hHHHhccChhhhHHHHHH----HHH
Confidence            445666666666665555443    33333  35566666665555554443   232333 33445555555    888


Q ss_pred             HHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhh
Q 017963          124 SAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIM  203 (363)
Q Consensus       124 ~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~s~~~~~~  203 (363)
                      ++..|++|-.++..+|.+++.-+--+.|+-.++++    .+|..-..|+++  +..|..++.-...+      ...-+..
T Consensus        81 Lg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~~d~vwvaL--AvlGi~lL~p~~~~------~~~lDp~  148 (292)
T COG5006          81 LGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRRLRDFVWVAL--AVLGIWLLLPLGQS------VWSLDPV  148 (292)
T ss_pred             HHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh----ccchhhHHHHHH--HHHHHHhheeccCC------cCcCCHH
Confidence            88999977799999999999999999998888765    455555555554  55666665333222      1223689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhcccchhHHHH
Q 017963          204 GFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYLV  283 (363)
Q Consensus       204 G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~~g~~~y~l~  283 (363)
                      |..++++|.++|+.|...+|    |+.+..+-..-+..-+.++.+  +++-+|..-.|. ..+.-+     .-...--+.
T Consensus       149 Gv~~Al~AG~~Wa~YIv~G~----r~g~~~~g~~g~a~gm~vAav--iv~Pig~~~ag~-~l~~p~-----ll~laLgva  216 (292)
T COG5006         149 GVALALGAGACWALYIVLGQ----RAGRAEHGTAGVAVGMLVAAL--IVLPIGAAQAGP-ALFSPS-----LLPLALGVA  216 (292)
T ss_pred             HHHHHHHHhHHHHHHHHHcc----hhcccCCCchHHHHHHHHHHH--HHhhhhhhhcch-hhcChH-----HHHHHHHHH
Confidence            99999999999999999985    444332222111111112222  222245433332 111100     001122223


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHH-HHHHHHhCCCCchhHHHHHHHHHHHHH
Q 017963          284 LIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITS-IAAVILLHDPMSGFKILSLIVTFWGFG  349 (363)
Q Consensus       284 lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~-ilAvl~f~d~~~~~k~ig~~lvl~G~~  349 (363)
                      +..+++-|.+--+...++-..+-+++-     ..-|... +.+.+++||.+|..|+.+.++++.+.+
T Consensus       217 vlSSalPYsLEmiAL~rlp~~~F~~Ll-----SLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         217 VLSSALPYSLEMIALRRLPARTFGTLL-----SLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             HHhcccchHHHHHHHhhCChhHHHHHH-----HhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            455566666655555555554333332     2568766 999999999999999999999997655

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.77  E-value=2.7e-06  Score=82.36  Aligned_cols=226  Identities=15%  Similarity=0.164  Sum_probs=164.4

Q ss_pred             HHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCCc
Q 017963          119 VLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITD  198 (363)
Q Consensus       119 ~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~s~  198 (363)
                      ..++.....-.+=..+++|++-.|..+-.+.+.+=+|+.+.++-|+|++...-....+.+.|+.+-...+.+|.+.+..+
T Consensus        88 ~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~  167 (327)
T KOG1581|consen   88 LISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGR  167 (327)
T ss_pred             HHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCC
Confidence            33666666666555999999999999999999999999999999999999999999999999988776665553333334


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhc--cc
Q 017963          199 RQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFK--GG  276 (363)
Q Consensus       199 ~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~--~g  276 (363)
                      .+..+|+.+..+.-+.=|+    .+-..+++.+++. .....|++++.++.++....+++..|.+.    ++-.|-  +-
T Consensus       168 ~ns~~G~~Ll~~~L~fDgf----Tn~tQd~lf~~~k-~s~~~mM~~vNLf~~i~~~~~li~qg~~~----~av~F~~~hp  238 (327)
T KOG1581|consen  168 ENSPIGILLLFGYLLFDGF----TNATQDSLFKKYK-VSSLHMMFGVNLFSAILNGTYLILQGHLL----PAVSFIKEHP  238 (327)
T ss_pred             CCchHhHHHHHHHHHHHhh----HHhHHHHHhccCC-ccHhHHHHHHHHHHHHHHHHhhhcCCCCc----hHHHHHHcCh
Confidence            5678999999988888888    5556666665432 45678999999999999999977776532    111221  22


Q ss_pred             chhHHHHHH--HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHhc
Q 017963          277 VASYYLVLI--WGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYG  354 (363)
Q Consensus       277 ~~~y~l~lv--~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y~  354 (363)
                      +...-+.+-  ++++.+...+..    +-.-.++.-..|++.++-++.+++.++||.+.+..|+++..+++.|...=.|-
T Consensus       239 ~~~~Di~l~s~~gavGQ~FI~~T----I~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~  314 (327)
T KOG1581|consen  239 DVAFDILLYSTCGAVGQLFIFYT----IERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILL  314 (327)
T ss_pred             hHHHHHHHHHHhhhhhhheehhh----HhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHH
Confidence            223333121  222222222211    11123566777899999999999999999999999999999999988776665


Q ss_pred             ccC
Q 017963          355 NSS  357 (363)
Q Consensus       355 ~~~  357 (363)
                      +.+
T Consensus       315 k~~  317 (327)
T KOG1581|consen  315 KKK  317 (327)
T ss_pred             HHh
Confidence            543

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.69  E-value=2.3e-07  Score=76.36  Aligned_cols=116  Identities=22%  Similarity=0.315  Sum_probs=80.0

Q ss_pred             hhhHHhHhcCCcchHHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHHHHHHHH-HHHHHHHHHHhhccCChhH
Q 017963           64 LLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFL-SAADNLMYAYAYAYLPAST  142 (363)
Q Consensus        64 Ll~r~y~~~gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~~~~Gll-~~~~n~ly~~gL~ylpvst  142 (363)
                      ...|...++ -+..+...+-...+.+ +++..... .+++  .....++.....+..|++ .+..+.+|.++++++|++.
T Consensus         8 ~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   82 (126)
T PF00892_consen    8 VFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLIL-GRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASI   82 (126)
T ss_pred             HHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhh-cccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhH
Confidence            344444444 4445555555555555 33323222 1111  111222222223334555 6888999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHh
Q 017963          143 AALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTII  184 (363)
Q Consensus       143 ~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll  184 (363)
                      .+.+..++|+++++++++++|||+++.++.|+++...|.+++
T Consensus        83 ~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   83 VSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.59  E-value=1e-06  Score=80.89  Aligned_cols=222  Identities=13%  Similarity=0.173  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCCc
Q 017963          119 VLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITD  198 (363)
Q Consensus       119 ~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~s~  198 (363)
                      ++-++....|++|-.+++.++++..+-+.+-..+|+-+++.+.+|+|+.-.++.+++++.-|.++++..|..       .
T Consensus        58 PF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~-------~  130 (290)
T KOG4314|consen   58 PFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE-------H  130 (290)
T ss_pred             ceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch-------h
Confidence            456778889999999999999999999999999999999999999999999999999999998887644422       2


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHH---HHHhhcccccchhhhhhhcc
Q 017963          199 RQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTI---GVVVSKDFQGMKSEAKTFKG  275 (363)
Q Consensus       199 ~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~v---g~~~~g~~~~l~~e~~~f~~  275 (363)
                      ++.++|..++++++...++|    .++||+.+..-.+-.+--.+-..+++-.++--+   =+...|- +.+    +.|..
T Consensus       131 a~e~iGi~~AV~SA~~aAlY----KV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~V-E~~----qsFA~  201 (290)
T KOG4314|consen  131 ADEIIGIACAVGSAFMAALY----KVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGV-EHL----QSFAA  201 (290)
T ss_pred             hhhhhhHHHHHHHHHHHHHH----HHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhch-HHH----HHHhh
Confidence            45799999999999999995    455888876544322211111122222222111   1112221 111    22222


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHhcc
Q 017963          276 GVASYYLVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGN  355 (363)
Q Consensus       276 g~~~y~l~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y~~  355 (363)
                      .+|.   -+++.+..|.++-.-++-=+.....++-++=+.+.+|.....-.++=+-.++.....+..++..||...+..+
T Consensus       202 ~PWG---~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~  278 (290)
T KOG4314|consen  202 APWG---CLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE  278 (290)
T ss_pred             CCch---hhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence            2111   1334444444433222211223355555555677789888777775566788889999999999999887665


Q ss_pred             cCCC
Q 017963          356 SSTP  359 (363)
Q Consensus       356 ~~~~  359 (363)
                      -+|+
T Consensus       279 d~~e  282 (290)
T KOG4314|consen  279 DKDE  282 (290)
T ss_pred             chhh
Confidence            5544

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.23  E-value=4.6e-05  Score=71.33  Aligned_cols=118  Identities=16%  Similarity=0.140  Sum_probs=78.1

Q ss_pred             hhhhhhhHHhHhcCCcchHHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHHHHHHHH-HHHHHHHHHHhhccC
Q 017963           60 PASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFL-SAADNLMYAYAYAYL  138 (363)
Q Consensus        60 ~~~~Ll~r~y~~~gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~~~~Gll-~~~~n~ly~~gL~yl  138 (363)
                      +......|....+.+......+..+...-.+.+.|......   +++.+ ..+.+..-...|+. ....+.+|.++++++
T Consensus       141 a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  216 (260)
T TIGR00950       141 ALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLG---PNPQA-LSLQWGALLYLGLIGTALAYFLWNKGLTLV  216 (260)
T ss_pred             HHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcC---CCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44456666666554444433333333333344445544321   11111 22222222223433 567778899999999


Q ss_pred             ChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Q 017963          139 PASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAM  181 (363)
Q Consensus       139 pvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Ga  181 (363)
                      |+++.+++..++|++++++++++++||+++.++.|+++...|+
T Consensus       217 ~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       217 DPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999998884

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=3.2e-07  Score=87.70  Aligned_cols=220  Identities=17%  Similarity=0.240  Sum_probs=146.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 017963          116 AYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGN  195 (363)
Q Consensus       116 ~~~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~  195 (363)
                      ..++.=..+..||++    ++|.|++.|-+=++...+||.+++|.++|||-+..-..+-.+...|     +.-+.|. ++
T Consensus       108 lsvVfi~mI~fnnlc----L~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~G-----F~lGvdq-E~  177 (347)
T KOG1442|consen  108 LSVVFILMISFNNLC----LKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILG-----FGLGVDQ-EG  177 (347)
T ss_pred             hhheeeeehhcccee----hhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheeh-----heecccc-cc
Confidence            344444567788864    5889999999999999999999999999999998876665554444     3322221 12


Q ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhcc
Q 017963          196 ITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKG  275 (363)
Q Consensus       196 ~s~~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~~  275 (363)
                      .++.-...|.+.-+.|++.-++    ..+.-||+..... .-+-...+|....|.+.++--++++||++.+    .+|.+
T Consensus       178 ~~~~ls~~GvifGVlaSl~vAl----naiytkk~l~~v~-~~iw~lt~ynnv~a~lLflpll~lnge~~~v----~~~~~  248 (347)
T KOG1442|consen  178 STGTLSWIGVIFGVLASLAVAL----NAIYTKKVLPPVG-DCIWRLTAYNNVNALLLFLPLLILNGEFQAV----VGFPH  248 (347)
T ss_pred             ccCccchhhhHHHHHHHHHHHH----HHHhhheeccccc-CeehhhHHHHHHHHHHHHHHHHHHcchHHHH----cCccc
Confidence            2333457899998999998888    4444565543221 2234556678889999998889999997755    23321


Q ss_pred             -cchhHHHHHH-HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHh
Q 017963          276 -GVASYYLVLI-WGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIY  353 (363)
Q Consensus       276 -g~~~y~l~lv-~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y  353 (363)
                       +.+.++..+. .....+...++. .-.++.+|.+.-|+--+..-..-.++|+.+++|.-+...+-+-++++.|-..|.+
T Consensus       249 l~a~~Fw~~mtLsglfgF~mgyvT-g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~  327 (347)
T KOG1442|consen  249 LPAIKFWILMTLSGLFGFAMGYVT-GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTL  327 (347)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhee-eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHH
Confidence             2233333222 222233222222 1223455667655444444455669999999999999999999999999999976


Q ss_pred             cc
Q 017963          354 GN  355 (363)
Q Consensus       354 ~~  355 (363)
                      -+
T Consensus       328 vk  329 (347)
T KOG1442|consen  328 VK  329 (347)
T ss_pred             HH
Confidence            54

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.20  E-value=5e-05  Score=76.13  Aligned_cols=72  Identities=8%  Similarity=0.209  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCC
Q 017963          120 LGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSD  191 (363)
Q Consensus       120 ~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~  191 (363)
                      .|+..++..++|++++++++++..++....+|+|++++++++++|++++.++.|.++...|..+..++...|
T Consensus       262 ~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~  333 (358)
T PLN00411        262 MAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE  333 (358)
T ss_pred             HHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            344456677799999999999999999999999999999999999999999999999999998887655443

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.18  E-value=1.8e-05  Score=66.43  Aligned_cols=65  Identities=15%  Similarity=0.166  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhc
Q 017963          122 FLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIAL  186 (363)
Q Consensus       122 ll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~  186 (363)
                      +.++...+++..+++.+|.+.+..+.+++++++++.+++++|||+|+.|+.|+++..+|+++++.
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            44777888999999999999999999999999999999999999999999999999999988753

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.08  E-value=6.8e-07  Score=84.76  Aligned_cols=254  Identities=14%  Similarity=0.173  Sum_probs=161.2

Q ss_pred             CCcchHHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhH
Q 017963           73 GGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLV  152 (363)
Q Consensus        73 gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~  152 (363)
                      |=|-+=.+|++.=+-..+.--|..++++   +-.+-.+++    |+++++.=.-.|++-..+.+|++-.+.+++-+=..+
T Consensus        44 ~iN~Pt~QtFl~Y~LLalVY~~~~~fR~---~~~~~~~~h----Yilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip  116 (336)
T KOG2766|consen   44 GINAPTSQTFLNYVLLALVYGPIMLFRR---KYIKAKWRH----YILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIP  116 (336)
T ss_pred             cCCCccHHHHHHHHHHHHHHhhHHHhhh---HHHHHHHHH----hhheeEEeecccEEEeeehhhcchHHHHHHHHhhhH
Confidence            3455677888877766666666665422   111111333    777787777788877789999999999999999999


Q ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017963          153 FSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLVGR  232 (363)
Q Consensus       153 Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~s~~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~  232 (363)
                      -.++++++++|-|+.+.|+.|+++...|++++...|-.. .+..++.+...||.+++.+|-+||+.-..-|..-||.   
T Consensus       117 ~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~a-gd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~---  192 (336)
T KOG2766|consen  117 CVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHA-GDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA---  192 (336)
T ss_pred             HHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecc-ccccCCCCCccCcEEEEecceeeeeccccHHHHHhcC---
Confidence            999999999999999999999999999999887665432 1223456789999999999999999444433433333   


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhhc-ccccchhhhhhhcccchhHHHH-HHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 017963          233 RSFHVVLEQQVMVSLFAFAFTTIGVVVSK-DFQGMKSEAKTFKGGVASYYLV-LIWGAITFQLGVLGGTAVLFLASTVLA  310 (363)
Q Consensus       233 ~~~~~vle~q~~~~l~a~~~~~vg~~~~g-~~~~l~~e~~~f~~g~~~y~l~-lv~tav~~q~~~lgv~glv~~~ssL~a  310 (363)
                       +   ..|.+-.+++++++...+-.+.+. +-..++.+      ++..-++. ...-..-|.+.++    ++...++-.-
T Consensus       193 -d---~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~------~~i~~yl~f~L~MFllYsl~pi----l~k~~~aT~~  258 (336)
T KOG2766|consen  193 -D---RVELMGFLGLFGAIISAIQFIFERHHVSTLHWD------SAIFLYLRFALTMFLLYSLAPI----LIKTNSATMF  258 (336)
T ss_pred             -c---HHHHHHHHHHHHHHHHHHHHhhhccceeeEeeh------HHHHHHHHHHHHHHHHHHhhHH----heecCCceEE
Confidence             2   356667788999888888765554 22222221      11111111 1111122222221    1111111111


Q ss_pred             HHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHh
Q 017963          311 GILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIY  353 (363)
Q Consensus       311 ~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y  353 (363)
                      |. +.+---.-+++ +-.||-+++|.-.++.+.+..|+..|.-
T Consensus       259 nl-slLTsDmwsl~-i~~FgYhv~wLY~laF~~i~~GliiYs~  299 (336)
T KOG2766|consen  259 NL-SLLTSDMWSLL-IRTFGYHVDWLYFLAFATIATGLIIYST  299 (336)
T ss_pred             Eh-hHhHHHHHHHH-HHHHhcchhhhhHHHHHHHHHhhEEeec
Confidence            10 00000111111 1557888999999999999999999833

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.07  E-value=0.00066  Score=65.52  Aligned_cols=113  Identities=10%  Similarity=0.079  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHH-HhhhhHHHHHHHHHHhcccccHHHH----HHHHHHHHHHHHhh
Q 017963          111 LKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALL-ASSSLVFSTLFGYFLVKNKLNAAMI----NAVVIITAAMTIIA  185 (363)
Q Consensus       111 ~~l~~~~~~~Gll~~~~n~ly~~gL~ylpvst~sli-~ssql~Ftalfs~~ilkek~t~~~i----~svvllt~Gavll~  185 (363)
                      .+.+..+++.|+..+..|..-..+.+++.+|..-=+ ...|++.|.+.++++++|--+..+.    .++++..+|+++.+
T Consensus        42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts  121 (269)
T PF06800_consen   42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS  121 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence            478888999999999999977688877666544333 3689999999999999997776654    48889999998887


Q ss_pred             ccCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 017963          186 LDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSEL  224 (363)
Q Consensus       186 ~~~~~~~~~~~s~~~~~~G~~l~L~Aa~l~gl~l~l~q~  224 (363)
                      .++++++ ++.++++..-|....+.+++.|..|-.+.+.
T Consensus       122 ~~~~~~~-~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~  159 (269)
T PF06800_consen  122 YQDKKSD-KSSSKSNMKKGILALLISTIGYWIYSVIPKA  159 (269)
T ss_pred             ccccccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence            7775532 2223455667999999999999999888543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.00  E-value=0.00036  Score=67.43  Aligned_cols=69  Identities=22%  Similarity=0.159  Sum_probs=60.7

Q ss_pred             HHHH-HHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccC
Q 017963          120 LGFL-SAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDS  188 (363)
Q Consensus       120 ~Gll-~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~  188 (363)
                      .|+. ....+.+|.++++++|++..+++..++|++++++++++++|++++.++.|.++...|++......
T Consensus       214 lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        214 VAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            4444 45566699999999999999999999999999999999999999999999999999988775443

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.00  E-value=9.4e-05  Score=72.45  Aligned_cols=68  Identities=25%  Similarity=0.352  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCC
Q 017963          123 LSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDS  190 (363)
Q Consensus       123 l~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~  190 (363)
                      +++.++.+-..++.+.|++.-+=+.+.+++++++++.+++|||++++.+.|+++...|++++......
T Consensus        59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~  126 (300)
T PF05653_consen   59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPK  126 (300)
T ss_pred             HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCC
Confidence            34666777778999999999999999999999999999999999999999999999999888765544

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.95  E-value=0.00011  Score=71.20  Aligned_cols=108  Identities=18%  Similarity=0.273  Sum_probs=86.5

Q ss_pred             cchHHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChhHHHHHHhhhhHH
Q 017963           75 TSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYA-YLPASTAALLASSSLVF  153 (363)
Q Consensus        75 ~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~~~~Gll~~~~n~ly~~gL~-ylpvst~sli~ssql~F  153 (363)
                      -+.+-.++.|..|..+-...++..++    +.+|..++........|++.+..+.+|..+++ +.++++++++.+..|+.
T Consensus       176 ~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvi  251 (290)
T TIGR00776       176 VDGLSVLLPQAIGMVIGGIIFNLGHI----LAKPLKKYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVII  251 (290)
T ss_pred             CCcceehhHHHHHHHHHHHHHHHHHh----cccchHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHH
Confidence            55677788888866665544444331    11333444444566689999999999999999 99999999999999999


Q ss_pred             HHHHHHHHhcccccHHHH----HHHHHHHHHHHHhhc
Q 017963          154 STLFGYFLVKNKLNAAMI----NAVVIITAAMTIIAL  186 (363)
Q Consensus       154 talfs~~ilkek~t~~~i----~svvllt~Gavll~~  186 (363)
                      +++++++++||+.+++++    .|.++...|+.+++.
T Consensus       252 a~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       252 STLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            999999999999999999    999999999888754

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.93  E-value=0.00021  Score=66.96  Aligned_cols=260  Identities=12%  Similarity=0.151  Sum_probs=158.6

Q ss_pred             CCcchHHHHHHHhhhhHHHHHHHhhcc-cc-ccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhh
Q 017963           73 GGTSKWIISWVAVAGWPLTALILLPTY-FV-FKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSS  150 (363)
Q Consensus        73 gg~~~w~~t~vq~ag~p~l~~p~~~~~-~~-~~~~~~~~~~~l~~~~~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssq  150 (363)
                      |-+...+.-+||.--...-+.-+=... -+ |.++.+    +.    .++.+++...-+--+-+++|+|++.++++.-+.
T Consensus        33 gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK----~W----fpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNlt  104 (309)
T COG5070          33 GFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAK----KW----FPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLT  104 (309)
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhh----hh----cCHHHHHHHHHHhcccceeeeeeeHHHHhccce
Confidence            778888888888654443322111110 01 111111    11    112344445555556889999999999999999


Q ss_pred             hHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017963          151 LVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDRYGNITDRQYIMGFVWDILGSALHGLIFALSELVFVKLV  230 (363)
Q Consensus       151 l~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~~~~~s~~~~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~  230 (363)
                      .+..+..-..++|.|.|.....+-+++.++++.-.++|.+...  ...+..-.|.+.....+...+.+...+    ||.+
T Consensus       105 II~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~--~~~~~lN~GY~Wm~~NclssaafVL~m----rkri  178 (309)
T COG5070         105 IILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASA--FKAQILNPGYLWMFTNCLSSAAFVLIM----RKRI  178 (309)
T ss_pred             eehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHH--HHhcccCCceEEEehhhHhHHHHHHHH----HHhh
Confidence            9999999999999999999999999999998886666643210  011122347777777888888866664    5555


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHH-HHHHhhcccccchhhhhhhcccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 017963          231 GRRSFHVVLEQQVMVSLFAFAFTT-IGVVVSKDFQGMKSEAKTFKGGVASYYLVLIWGAITFQLGVLGGTAVLFLASTVL  309 (363)
Q Consensus       231 ~~~~~~~vle~q~~~~l~a~~~~~-vg~~~~g~~~~l~~e~~~f~~g~~~y~l~lv~tav~~q~~~lgv~glv~~~ssL~  309 (363)
                      |-..+. =.|-++|-.+.+.+.++ .+++.+ ||..- .-+.+++.-.      +.|-+++ .+|.+|+---..|...++
T Consensus       179 ~ltNf~-d~dtmfYnNllslPiL~~~s~~~e-dws~~-n~annl~~d~------l~am~IS-gl~svgiSy~saWcvrVt  248 (309)
T COG5070         179 KLTNFK-DFDTMFYNNLLSLPILLSFSFLFE-DWSPG-NLANNLSVDS------LMAMFIS-GLCSVGISYCSAWCVRVT  248 (309)
T ss_pred             cccccc-hhhHHHHhhhHHHHHHHHHHHHhc-cCCcc-hhhcCCChHH------HHHHHHH-HHHHhhhhhccceeEeeh
Confidence            543322 24666888888888777 466655 66421 1122332111      2222211 223333222222323333


Q ss_pred             HHHH-H---HhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHhccc
Q 017963          310 AGIL-N---AIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGNS  356 (363)
Q Consensus       310 a~vi-~---~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y~~~  356 (363)
                      ++.. +   ++-.-..++.+.++|+++-|-.++.+..+-+..-+.|.+.+.
T Consensus       249 SSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks  299 (309)
T COG5070         249 SSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKS  299 (309)
T ss_pred             hhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322 2   222333457788889999999999999999988888887664

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.90  E-value=0.00034  Score=67.68  Aligned_cols=69  Identities=13%  Similarity=0.076  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhc
Q 017963          118 IVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIAL  186 (363)
Q Consensus       118 ~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~  186 (363)
                      +..|+..+.-+++|.++++++|++..+++...+|++++++++++++|++++.++.|.++...|+.+...
T Consensus       219 ~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        219 LLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            345566777888999999999999999999999999999999999999999999999999999877644

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.79  E-value=2.8e-05  Score=66.83  Aligned_cols=112  Identities=18%  Similarity=0.150  Sum_probs=82.5

Q ss_pred             CCcchHHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhH
Q 017963           73 GGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLV  152 (363)
Q Consensus        73 gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~  152 (363)
                      .|-..=++|.+.+.-.-..+.-.++.. .+...+....+|-+..-++.|+..++.-++|+.+++.=++|--.=+-.+.++
T Consensus        27 ~~vdp~~At~IRtiVi~~~l~~v~~~~-g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svv  105 (140)
T COG2510          27 EGVDPDFATTIRTIVILIFLLIVLLVT-GNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVV  105 (140)
T ss_pred             cccCccHHHHHHHHHHHHHHHHHHHhc-CceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHH
Confidence            444455566665544333333233221 1222222245566666788999999999999999998888877778899999


Q ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHHHhh
Q 017963          153 FSTLFGYFLVKNKLNAAMINAVVIITAAMTIIA  185 (363)
Q Consensus       153 Ftalfs~~ilkek~t~~~i~svvllt~Gavll~  185 (363)
                      ++++||++++|||.|..+++|+++.++|+++++
T Consensus       106 l~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510         106 LAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            999999999999999999999999999998874

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.79  E-value=0.00072  Score=58.28  Aligned_cols=111  Identities=10%  Similarity=0.048  Sum_probs=84.2

Q ss_pred             CCcchHHHHHHHhhhhHHHHHHHhhccccccCC----CC----CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHH
Q 017963           73 GGTSKWIISWVAVAGWPLTALILLPTYFVFKTF----PT----PLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAA  144 (363)
Q Consensus        73 gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~----~~----~~~~~l~~~~~~~Gll~~~~n~ly~~gL~ylpvst~s  144 (363)
                      +-+..=+....+..++++++++.++.-..+..+    ..    ...++....-+..|++....|+.-..-++++++.|++
T Consensus        32 ~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~  111 (153)
T PF03151_consen   32 KLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYS  111 (153)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHH
Confidence            344445667777788888777666542211000    00    1133555555677888888899887999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 017963          145 LLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTI  183 (363)
Q Consensus       145 li~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavl  183 (363)
                      ++...+-+.+.+++.++++|++|..++.|+++.+.|..+
T Consensus       112 v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen  112 VLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            999999999999999999999999999999999999754

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.78  E-value=0.00081  Score=65.11  Aligned_cols=71  Identities=18%  Similarity=0.190  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhc
Q 017963          116 AYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIAL  186 (363)
Q Consensus       116 ~~~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~  186 (363)
                      .....|+..+.-+++|+++++++|++..+++...+|+++.++++++++|++++.++.|.++..+|..++..
T Consensus       215 ~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        215 LLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            33445666778888999999999999999999999999999999999999999999999999888877643

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.76  E-value=8.3e-05  Score=71.33  Aligned_cols=67  Identities=21%  Similarity=0.414  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 017963          117 YIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTI  183 (363)
Q Consensus       117 ~~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavl  183 (363)
                      ....++..+..+.+|.+++++.|++..+.+..++|+++.++++++++||+++.++.|.++..+|..+
T Consensus       214 ~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       214 ATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            3445566778888999999999999999999999999999999999999999999999999999876

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.75  E-value=0.0011  Score=63.99  Aligned_cols=64  Identities=22%  Similarity=0.184  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhcc
Q 017963          124 SAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALD  187 (363)
Q Consensus       124 ~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~  187 (363)
                      .+..+.+|.++++++|++..+++..++|++++++++++++|++|+.++.|.++...|..++...
T Consensus       223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            5567789999999999999999999999999999999999999999999999999998887543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=97.57  E-value=0.00062  Score=65.85  Aligned_cols=61  Identities=8%  Similarity=0.010  Sum_probs=55.7

Q ss_pred             HHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhc
Q 017963          126 ADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIAL  186 (363)
Q Consensus       126 ~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~  186 (363)
                      .-|.++..++++++++++++....+|++++++++++++|++|..++.|.++...|..+...
T Consensus       233 ~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       233 FYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence            3446777899999999999999999999999999999999999999999999999887653

specificities overlap.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.45  E-value=0.086  Score=52.80  Aligned_cols=110  Identities=13%  Similarity=0.185  Sum_probs=86.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHH-HHHHhhhhHHHHHHHHHHhcc-------cccHHHHHHHHHHHHHH
Q 017963          110 DLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTA-ALLASSSLVFSTLFGYFLVKN-------KLNAAMINAVVIITAAM  181 (363)
Q Consensus       110 ~~~l~~~~~~~Gll~~~~n~ly~~gL~ylpvst~-sli~ssql~Ftalfs~~ilke-------k~t~~~i~svvllt~Ga  181 (363)
                      +.+.+..+.+.|++.+..|..+..+.+|+.+|.. .+-.-+|++++.++..++.+|       +-...-+.|+++..+|+
T Consensus        69 ~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi  148 (345)
T PRK13499         69 SGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGV  148 (345)
T ss_pred             CHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHH
Confidence            4577778899999999999999999999888765 455678999999999999875       22345788999999999


Q ss_pred             HHhhc----cCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 017963          182 TIIAL----DSDSDRYGNITDRQYIMGFVWDILGSALHGLIF  219 (363)
Q Consensus       182 vll~~----~~~~~~~~~~s~~~~~~G~~l~L~Aa~l~gl~l  219 (363)
                      ++.+.    .+..++.++.++++..-|++.++.+.+.|+.|-
T Consensus       149 ~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        149 AIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             HHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHH
Confidence            99877    443221111345567789999999999999987

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.37  E-value=0.0018  Score=55.27  Aligned_cols=68  Identities=18%  Similarity=0.301  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHhhccCChhH-HHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccC
Q 017963          121 GFLSAADNLMYAYAYAYLPAST-AALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDS  188 (363)
Q Consensus       121 Gll~~~~n~ly~~gL~ylpvst-~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~  188 (363)
                      -+.++...++++.+++++|.+. |++......+.+++.+.++++|++|+.++.++.+..+|++++-..+
T Consensus        37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            3557788889999999999986 4666779999999999999999999999999999999998875544

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.35  E-value=0.009  Score=57.85  Aligned_cols=65  Identities=14%  Similarity=0.090  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccC
Q 017963          124 SAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDS  188 (363)
Q Consensus       124 ~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~  188 (363)
                      .+....+|..+++++++...+++...+|++++++++++++|++++.++.|.++..+|+.+...+.
T Consensus       225 t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~  289 (299)
T PRK11453        225 TIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL  289 (299)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence            55677799999999999999999999999999999999999999999999999999988765544

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.00095  Score=65.46  Aligned_cols=70  Identities=26%  Similarity=0.368  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCCCCC
Q 017963          123 LSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSDSDR  192 (363)
Q Consensus       123 l~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~~~~  192 (363)
                      .+++.+..=+.++.|-|++.-+=+.+++.+++++++..++|||++..-.+|.++..+|..++..+...++
T Consensus        73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~  142 (335)
T KOG2922|consen   73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQ  142 (335)
T ss_pred             HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccc
Confidence            3555555545677778999889999999999999999999999999999999999999999988876543

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.20  E-value=0.0022  Score=55.41  Aligned_cols=66  Identities=24%  Similarity=0.193  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHH--HhcccccHHHHHHHHHHHHHHHHhhccC
Q 017963          123 LSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYF--LVKNKLNAAMINAVVIITAAMTIIALDS  188 (363)
Q Consensus       123 l~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~--ilkek~t~~~i~svvllt~Gavll~~~~  188 (363)
                      .++...++|.++++..|++.+.-+.+....++++.++.  +++|++|+.|+.|+++..+|+.++..++
T Consensus        57 ~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         57 GYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            36667779999999999999998888887888888885  8999999999999999999999976433

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.17  E-value=0.018  Score=53.81  Aligned_cols=76  Identities=28%  Similarity=0.415  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhcc
Q 017963          112 KLTLAYIVLGFLSA-ADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALD  187 (363)
Q Consensus       112 ~l~~~~~~~Gll~~-~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~  187 (363)
                      +.+......|+... ..+.+|.++++..|++..+.+..+++++++++++++++|+++..++.|.++...|..+...+
T Consensus       212 ~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         212 RAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            33334445565555 47888889999999999999999999999999999999999999999999999998876544

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.16  E-value=0.0051  Score=50.20  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=31.8

Q ss_pred             hHHH-HHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHh
Q 017963          317 RVPI-TSIAAVILLHDPMSGFKILSLIVTFWGFGSYIY  353 (363)
Q Consensus       317 ~lPv-~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y  353 (363)
                      ..|+ +.++++++++|+++..+++|.++++.|.....|
T Consensus        89 ~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~~  126 (126)
T PF00892_consen   89 LSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIST  126 (126)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence            4466 559999999999999999999999999887653

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.15  E-value=0.0044  Score=51.78  Aligned_cols=65  Identities=17%  Similarity=0.205  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHhhccCChhH-HHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhc
Q 017963          122 FLSAADNLMYAYAYAYLPAST-AALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIAL  186 (363)
Q Consensus       122 ll~~~~n~ly~~gL~ylpvst-~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~  186 (363)
                      +.+....++.+.+++++|+++ |++-.-...+-+++.++++++||+++.++.++.+..+|.+.+-.
T Consensus        38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            447777888999999999986 68889999999999999999999999999999999999887643

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.13  E-value=0.0042  Score=52.19  Aligned_cols=63  Identities=21%  Similarity=0.159  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHhhccCChhH-HHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHh
Q 017963          122 FLSAADNLMYAYAYAYLPAST-AALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTII  184 (363)
Q Consensus       122 ll~~~~n~ly~~gL~ylpvst-~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll  184 (363)
                      +.++...++.+.+++++|+++ |++-.-...+.+++.++++.||++|+.|+.++.+...|++.+
T Consensus        43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            447778888889999999986 688888999999999999999999999999999999998875

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.12  E-value=0.0049  Score=51.42  Aligned_cols=63  Identities=19%  Similarity=0.227  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHhhccCChhH-HHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhh
Q 017963          123 LSAADNLMYAYAYAYLPAST-AALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIA  185 (363)
Q Consensus       123 l~~~~n~ly~~gL~ylpvst-~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~  185 (363)
                      .++...++.+.+++.+|.++ |++-.-...+.+++.++++.|||+|+.++.++.+...|++.+-
T Consensus        38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            36777888889999999986 6788889999999999999999999999999999999988863

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.06  E-value=0.0059  Score=51.34  Aligned_cols=66  Identities=21%  Similarity=0.349  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHhhccCChhH-HHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhcc
Q 017963          122 FLSAADNLMYAYAYAYLPAST-AALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALD  187 (363)
Q Consensus       122 ll~~~~n~ly~~gL~ylpvst-~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~  187 (363)
                      +.++...++++.+++.+|.++ |++-.....+.+++.++++++|++|+.++.++.+..+|++++-..
T Consensus        38 ~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            337777778889999999986 455567899999999999999999999999999999999987543

>TIGR00688 rarD rarD protein

Probab=96.94  E-value=0.04  Score=51.84  Aligned_cols=136  Identities=15%  Similarity=0.230  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhcccchh--HH
Q 017963          204 GFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVAS--YY  281 (363)
Q Consensus       204 G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~~g~~~--y~  281 (363)
                      |.++.+.|+++||.-....    |. ...   ....+..++=.+++++....-+...++++...+..+..++.+..  ..
T Consensus         3 g~~~~i~a~~~wg~~~~~~----k~-~~~---~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYS----KL-LKP---LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLL   74 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHH----HH-hcc---CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHH
Confidence            8899999999999966664    32 221   23566666677777766554443343322111111111111111  11


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHH-HHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q 017963          282 LVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPI-TSIAAVILLHDPMSGFKILSLIVTFWGFGSYI  352 (363)
Q Consensus       282 l~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv-~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~  352 (363)
                      +.-+.....|.+...++...    +.-.+.+ ....-|+ +.+++.++++|+++..++++.++.+.|+..-.
T Consensus        75 ~~g~~~~~~~~~~~~a~~~~----~~~~a~~-l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        75 LCGLLIGFNWWLFIWAVNNG----SSLEVSL-GYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHcc----hHHHHHH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            11111233444444442221    1111222 2334587 66999999999999999999999999987654

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG2510 Predicted membrane protein [Function unknown]

Probab=96.91  E-value=0.013  Score=50.65  Aligned_cols=125  Identities=15%  Similarity=0.225  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc-c---cchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhcccchhH
Q 017963          205 FVWDILGSALHGLIFALSELVFVKLVGR-R---SFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASY  280 (363)
Q Consensus       205 ~~l~L~Aa~l~gl~l~l~q~~~kkv~~~-~---~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~~g~~~y  280 (363)
                      .+.++.+|+.+|+--.     |.|++=+ .   ....+      -..+...++..=.+..|.|+ .+.|.    ..+...
T Consensus         5 ~~~ALLsA~fa~L~~i-----F~KIGl~~vdp~~At~I------RtiVi~~~l~~v~~~~g~~~-~~~~~----~~k~~l   68 (140)
T COG2510           5 IIYALLSALFAGLTPI-----FAKIGLEGVDPDFATTI------RTIVILIFLLIVLLVTGNWQ-AGGEI----GPKSWL   68 (140)
T ss_pred             HHHHHHHHHHHHHHHH-----HHHHhccccCccHHHHH------HHHHHHHHHHHHHHhcCcee-ccccc----Ccceeh
Confidence            3567778888887443     4555422 1   11222      23444445555556677765 33232    233233


Q ss_pred             HHHH--HHHHHHHHHHHHh-hhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Q 017963          281 YLVL--IWGAITFQLGVLG-GTAVLFLASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGS  350 (363)
Q Consensus       281 ~l~l--v~tav~~q~~~lg-v~glv~~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~  350 (363)
                      |+.+  ..+..+|++.+.. -.|-...+..+=+.     ...++.++++++++|++|..+.+|.+++..|...
T Consensus        69 flilSGla~glswl~Yf~ALk~G~as~VvPldk~-----svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gail  136 (140)
T COG2510          69 FLILSGLAGGLSWLLYFRALKKGKASRVVPLDKT-----SVVLAVLLSILFLGERLSLPTWIGIVLIVIGAIL  136 (140)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccc-----cHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeee
Confidence            3323  4667899998866 22332222222211     3344669999999999999999999999998754

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=96.77  E-value=0.037  Score=45.93  Aligned_cols=43  Identities=14%  Similarity=0.299  Sum_probs=37.1

Q ss_pred             hHHH-HHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHhcccCCC
Q 017963          317 RVPI-TSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGNSSTP  359 (363)
Q Consensus       317 ~lPv-~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y~~~~~~  359 (363)
                      .-|+ +.+++.++|+|+++..++++.++++.|+..-.+++...+
T Consensus        69 ~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~~~  112 (113)
T PF13536_consen   69 LSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLTGA  112 (113)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcccC
Confidence            3466 559999999999999999999999999999888876543

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=96.65  E-value=0.01  Score=59.21  Aligned_cols=64  Identities=9%  Similarity=0.040  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHh
Q 017963          121 GFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTII  184 (363)
Q Consensus       121 Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll  184 (363)
                      |+...+.|..-.++++.+++.++++....+++++.++|+++++|++|+.++.|.++...|+.+.
T Consensus       283 ~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY  346 (350)
T PTZ00343        283 GVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY  346 (350)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence            3333333333336999999999999999999999999999999999999999999999998764

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.30  E-value=0.015  Score=47.15  Aligned_cols=54  Identities=22%  Similarity=0.209  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHhhccCChhHH-HHHHhhhhHHHHHHHHHHhcccccHHHHHHHHH
Q 017963          123 LSAADNLMYAYAYAYLPASTA-ALLASSSLVFSTLFGYFLVKNKLNAAMINAVVI  176 (363)
Q Consensus       123 l~~~~n~ly~~gL~ylpvst~-sli~ssql~Ftalfs~~ilkek~t~~~i~svvl  176 (363)
                      .++...++++.+++++|.+++ .+......+.+.+.+.++.+|++|+.|+.++.+
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l   92 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence            477788899999999999986 777789999999999999999999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=95.61  E-value=0.27  Score=47.74  Aligned_cols=125  Identities=12%  Similarity=0.173  Sum_probs=77.6

Q ss_pred             hcchhhhhhhHHhHhcCCcchHHHHHHHhhhhHHHHHHHhhccccccCC------CCCCcHHHHHHHHHHHHHHHHHHHH
Q 017963           57 VAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTF------PTPLDLKLTLAYIVLGFLSAADNLM  130 (363)
Q Consensus        57 ~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~------~~~~~~~l~~~~~~~Gll~~~~n~l  130 (363)
                      ....-+..-.|.|-+++-+..=+.-....-+.|..+++.......+-.+      +.|.....+......|  ..++++.
T Consensus       165 ~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~--~~g~~~i  242 (303)
T PF08449_consen  165 LDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTG--ALGQFFI  242 (303)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHH
Confidence            3334455556665555444422333345556666555554421111111      1233223333333333  4444555


Q ss_pred             HHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHh
Q 017963          131 YAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTII  184 (363)
Q Consensus       131 y~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll  184 (363)
                      | .-.+..++-+.+++.++.-+++.++|+++.++++++.++.|+++.+.|..+=
T Consensus       243 ~-~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~  295 (303)
T PF08449_consen  243 F-YLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY  295 (303)
T ss_pred             H-HHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence            5 5567789999999999999999999999999999999999999999997663

; GO: 0055085 transmembrane transport

>PRK13499 rhamnose-proton symporter; Provisional

Probab=95.60  E-value=0.28  Score=49.19  Aligned_cols=115  Identities=17%  Similarity=0.087  Sum_probs=79.5

Q ss_pred             CCcchHHHHHHHhhhhHHHH----HHHhhcc--cccc----CC---CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 017963           73 GGTSKWIISWVAVAGWPLTA----LILLPTY--FVFK----TF---PTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLP  139 (363)
Q Consensus        73 gg~~~w~~t~vq~ag~p~l~----~p~~~~~--~~~~----~~---~~~~~~~l~~~~~~~Gll~~~~n~ly~~gL~ylp  139 (363)
                      .|.+.+-..+.|..+.-+=.    +.++...  ++++    .+   +++...|-.+.+++.|++...+|+.|..|-+.++
T Consensus       206 ~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g  285 (345)
T PRK13499        206 LGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLG  285 (345)
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            56777888888877443321    1112211  1111    01   2344567778889999999999999999988875


Q ss_pred             hhHHH----HHHhhhhHHHHHHHHHHhccccc------HHHHHHHHHHHHHHHHhhccC
Q 017963          140 ASTAA----LLASSSLVFSTLFGYFLVKNKLN------AAMINAVVIITAAMTIIALDS  188 (363)
Q Consensus       140 vst~s----li~ssql~Ftalfs~~ilkek~t------~~~i~svvllt~Gavll~~~~  188 (363)
                      +++..    +-.|+..++..+-+. ++||+=+      +..+.++++..+|+++++.+.
T Consensus       286 ~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~~  343 (345)
T PRK13499        286 AQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLGN  343 (345)
T ss_pred             CccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhcc
Confidence            55444    444888888888888 5898877      677889999999998887654

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=95.54  E-value=0.088  Score=50.51  Aligned_cols=74  Identities=23%  Similarity=0.187  Sum_probs=63.1

Q ss_pred             CcHHHHHHHHHHHHHHHHHHH-HHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Q 017963          109 LDLKLTLAYIVLGFLSAADNL-MYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMT  182 (363)
Q Consensus       109 ~~~~l~~~~~~~Gll~~~~n~-ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gav  182 (363)
                      ..+.++..+...|++...--| +=..+++.+|..+++++.+..|++.++-++++++|++|+.||.+++...++++
T Consensus       204 ~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         204 FSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             cChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            466777777777777666555 67789999999999999999999999999999999999999999988776654

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=95.46  E-value=0.55  Score=40.88  Aligned_cols=127  Identities=19%  Similarity=0.137  Sum_probs=76.8

Q ss_pred             HHHHHHHHhcchhhhhhhHHhHhcCCcchHHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHHHHHHHHHHHHH
Q 017963           49 VLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADN  128 (363)
Q Consensus        49 ~~~~~~~~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~~~~Gll~~~~n  128 (363)
                      ++...++.+|...-.-+.+   . -|+..+-+.+.+..|+..+.+..++...++.++.++. ++.....-++|.....-+
T Consensus         7 ~~aG~~i~~q~~~N~~L~~---~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~-p~w~~lGG~lG~~~V~~~   81 (138)
T PF04657_consen    7 LLAGALIALQAAFNGQLGK---A-LGSPLVASFISFGVGFILLLIILLITGRPSLASLSSV-PWWAYLGGLLGVFFVLSN   81 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHH---H-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccC-ChHHhccHHHHHHHHHHH
Confidence            3444445555433333332   2 3455666666778888888776666432211112222 333333455554444433


Q ss_pred             HHHHHhhccCChhHH-HHHHhhhhHHHHHHHHH----HhcccccHHHHHHHHHHHHHHHH
Q 017963          129 LMYAYAYAYLPASTA-ALLASSSLVFSTLFGYF----LVKNKLNAAMINAVVIITAAMTI  183 (363)
Q Consensus       129 ~ly~~gL~ylpvst~-sli~ssql~Ftalfs~~----ilkek~t~~~i~svvllt~Gavl  183 (363)
                      .   +....+.++.. .++..-|++..+++..+    .-|+|+++.++.|++++.+|+.+
T Consensus        82 ~---~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   82 I---ILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             H---HHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            3   34455566554 45567799999999987    68999999999999999999753

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=95.45  E-value=0.4  Score=46.78  Aligned_cols=136  Identities=16%  Similarity=0.206  Sum_probs=81.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhcccchhH
Q 017963          201 YIMGFVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASY  280 (363)
Q Consensus       201 ~~~G~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~~g~~~y  280 (363)
                      ..-|+++.+.|.++||+.=.    .+| ..++-+   ..|+-.+=-.-+.++.++=+...+.|+++.+   ..++.+...
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~----y~k-ll~~~~---~~eIlahRviwS~~~~l~ll~~~r~~~~~~~---~~~~p~~~~   73 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPL----YFK-LLEPLP---ATEILAHRVIWSFPFMLALLFLLRQWRELKQ---LLKQPKTLL   73 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHH----HHH-HHccCC---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHhCcHHHH
Confidence            34599999999999999332    334 444433   3455544444444444444555566654432   233333222


Q ss_pred             HHHHH--HHHHHHHHHHHhh-hhhhhhhhhhhHHHHHHhhHHHHH-HHHHHHhCCCCchhHHHHHHHHHHHHHHHHh
Q 017963          281 YLVLI--WGAITFQLGVLGG-TAVLFLASTVLAGILNAIRVPITS-IAAVILLHDPMSGFKILSLIVTFWGFGSYIY  353 (363)
Q Consensus       281 ~l~lv--~tav~~q~~~lgv-~glv~~~ssL~a~vi~~~~lPv~~-ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y  353 (363)
                      ...+.  -...+|.++.-.+ +|++-.+|  +.+    ...|++. +++.++++|+++..|.++.+++..|+..-.+
T Consensus        74 ~~~l~a~li~~nW~lfiWAvn~g~~leaS--LGY----~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~  144 (293)
T COG2962          74 MLALTALLIGLNWWLFIWAVNNGHVLEAS--LGY----FINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW  144 (293)
T ss_pred             HHHHHHHHHHHHHHHhheecCCCchhHHH--hHH----HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            22121  2225788777553 34554422  111    1338855 9999999999999999999999999987644

>TIGR00803 nst UDP-galactose transporter

Probab=95.41  E-value=0.039  Score=50.99  Aligned_cols=118  Identities=18%  Similarity=0.182  Sum_probs=79.0

Q ss_pred             hhhhhhhHHhHhcCCcchHHHHHHHhhhhHHHHHHHhhcc--ccccC--CCCC----CcHHHHHHHHHHHHHHHHHHHHH
Q 017963           60 PASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTY--FVFKT--FPTP----LDLKLTLAYIVLGFLSAADNLMY  131 (363)
Q Consensus        60 ~~~~Ll~r~y~~~gg~~~w~~t~vq~ag~p~l~~p~~~~~--~~~~~--~~~~----~~~~l~~~~~~~Gll~~~~n~ly  131 (363)
                      +...=+.+.|.+++=+++=..-+.|....|...++....-  .....  ...+    .....+..    ++..+....+.
T Consensus        94 ~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~a~~~~~v  169 (222)
T TIGR00803        94 LLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIV----GLLNVGGGLCI  169 (222)
T ss_pred             HHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHH----HHHHHhcCcee
Confidence            3344456667776433322335666666666655532211  11111  1111    23333333    45677777788


Q ss_pred             HHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Q 017963          132 AYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAM  181 (363)
Q Consensus       132 ~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Ga  181 (363)
                      ++-++|.+..+.++..+...++++++|+++++|++|..++.|+.+.+.|.
T Consensus       170 ~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~  219 (222)
T TIGR00803       170 GGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLAT  219 (222)
T ss_pred             eehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeee
Confidence            89999999999999999999999999999999999999999999887764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=95.07  E-value=0.34  Score=46.93  Aligned_cols=104  Identities=24%  Similarity=0.251  Sum_probs=74.3

Q ss_pred             CCcchHHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhH
Q 017963           73 GGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLV  152 (363)
Q Consensus        73 gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~~~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~  152 (363)
                      .+-+.|-.-+-|..|.-+-.+-+....   ++   +...|...-.+..|++.+..|+.|..+.+..-++++=.+.|+.++
T Consensus       160 ~~~~~~~~~lPqaiGm~i~a~i~~~~~---~~---~~~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vv  233 (269)
T PF06800_consen  160 FHVSGWSAFLPQAIGMLIGAFIFNLFS---KK---PFFEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVV  233 (269)
T ss_pred             cCCChhHhHHHHHHHHHHHHHHHhhcc---cc---cccccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHH
Confidence            445568888889888866443333221   11   111111222466699999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccHHHHH----HHHHHHHHHH
Q 017963          153 FSTLFGYFLVKNKLNAAMIN----AVVIITAAMT  182 (363)
Q Consensus       153 Ftalfs~~ilkek~t~~~i~----svvllt~Gav  182 (363)
                      .+.+.+.+++|||=+++++.    |+++..+|++
T Consensus       234 IStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  234 ISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI  267 (269)
T ss_pred             HHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence            99999999999999988654    4444444443

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=94.61  E-value=1.2  Score=38.42  Aligned_cols=34  Identities=18%  Similarity=0.152  Sum_probs=27.9

Q ss_pred             HHHHHHH--HhCCCCchhHHHHHHHHHHHHHHHHhc
Q 017963          321 TSIAAVI--LLHDPMSGFKILSLIVTFWGFGSYIYG  354 (363)
Q Consensus       321 ~~ilAvl--~f~d~~~~~k~ig~~lvl~G~~~y~y~  354 (363)
                      +.++++.  +|||++|..|++|.++++.|+..-..+
T Consensus        88 v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~  123 (129)
T PRK02971         88 VYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP  123 (129)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence            4455653  799999999999999999999886543

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=94.25  E-value=1.1  Score=44.81  Aligned_cols=144  Identities=12%  Similarity=0.049  Sum_probs=97.4

Q ss_pred             CCchhHHHHHHHHHHHHhcchhhhhhhHHhHhcCCcchHHHHHHHhhhhHHHHHHHhhccccccCCCCCCcHHHHHHHHH
Q 017963           40 KPISHWILLVLSSAAMLVAFPASSLLSRVYYANGGTSKWIISWVAVAGWPLTALILLPTYFVFKTFPTPLDLKLTLAYIV  119 (363)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~ag~p~l~~p~~~~~~~~~~~~~~~~~~l~~~~~~  119 (363)
                      ++..-.+++++..++-.+.++    +.. ++.++-++.=...++-.-|+.+..+......++. -+.-+...+.....+.
T Consensus       165 ~~i~GDll~l~~a~lya~~nV----~~E-~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~-i~~~~w~~~~~~~~v~  238 (334)
T PF06027_consen  165 NPILGDLLALLGAILYAVSNV----LEE-KLVKKAPRVEFLGMLGLFGFIISGIQLAILERSG-IESIHWTSQVIGLLVG  238 (334)
T ss_pred             ccchhHHHHHHHHHHHHHHHH----HHH-HhcccCCHHHHHHHHHHHHHHHHHHHHHheehhh-hhccCCChhhHHHHHH
Confidence            445556666666666555443    334 3344556666678888888887766555432221 1111233344444444


Q ss_pred             HHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCC
Q 017963          120 LGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSD  189 (363)
Q Consensus       120 ~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~  189 (363)
                      ..+.+.....+....+++.++....+=..|.-+++++++.++.++++++..+.|.++..+|.++....+.
T Consensus       239 ~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~  308 (334)
T PF06027_consen  239 YALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES  308 (334)
T ss_pred             HHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence            4555555555667788888888888888899999999999999999999999999999999888755543

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=93.23  E-value=2.1  Score=36.51  Aligned_cols=35  Identities=20%  Similarity=0.255  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q 017963          318 VPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYI  352 (363)
Q Consensus       318 lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~  352 (363)
                      ...+.+.++++|||++|..|.+++.+++.|+..--
T Consensus        68 ~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         68 ILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence            34466889999999999999999999999997753

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=93.03  E-value=0.2  Score=42.37  Aligned_cols=62  Identities=19%  Similarity=0.328  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHhhccCChhHHHHHH-hhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Q 017963          122 FLSAADNLMYAYAYAYLPASTAALLA-SSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTI  183 (363)
Q Consensus       122 ll~~~~n~ly~~gL~ylpvst~sli~-ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavl  183 (363)
                      ++......+|.+.++..|.|...=+. ++.-+||++.++++.+|..++..+.|+++...|..+
T Consensus        49 ~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   49 LLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            34455556888999999999888774 999999999999999999999999999999998765

Many members are annotated as potential transmembrane proteins.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=92.83  E-value=1.2  Score=37.41  Aligned_cols=69  Identities=22%  Similarity=0.304  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhh-hhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Q 017963          279 SYYLVLIWGAITFQLGVLGGTAVLF-LASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSY  351 (363)
Q Consensus       279 ~y~l~lv~tav~~q~~~lgv~glv~-~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y  351 (363)
                      .+.++++.-.+++.+....+..+-- .++++..+    .....+.+.++++|+|++|..|++++.+++.|+..-
T Consensus        32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~G----iG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L  101 (106)
T COG2076          32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTG----IGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL  101 (106)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHH----HHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence            3444555666666655555444322 33334444    233447799999999999999999999999998754

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=92.80  E-value=1.1  Score=37.60  Aligned_cols=34  Identities=9%  Similarity=0.086  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Q 017963          318 VPITSIAAVILLHDPMSGFKILSLIVTFWGFGSY  351 (363)
Q Consensus       318 lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y  351 (363)
                      ...+.+.++++|+|++|+.|.+++.+++.|+..-
T Consensus        68 ~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l  101 (110)
T PRK09541         68 IVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVI  101 (110)
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            3446789999999999999999999999998875

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=92.61  E-value=1.5  Score=36.84  Aligned_cols=64  Identities=16%  Similarity=0.123  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhh-hhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Q 017963          283 VLIWGAITFQLGVLGGTAVLF-LASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGS  350 (363)
Q Consensus       283 ~lv~tav~~q~~~lgv~glv~-~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~  350 (363)
                      +++..++++.+....+..+-- .++++.++    .....+.+.++++|||++|..|.+++.+++.|+..
T Consensus        41 ~~~~~~~sf~~Ls~al~~lpvgvAYAvW~G----iG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~  105 (109)
T PRK10650         41 SLAAVLAAFSALSQAVKGIDLSVAYALWGG----FGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVM  105 (109)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHH----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            344555555555554433222 22333333    23344678899999999999999999999999865

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=92.13  E-value=1.9  Score=42.40  Aligned_cols=36  Identities=11%  Similarity=0.180  Sum_probs=31.2

Q ss_pred             hHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q 017963          317 RVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSYI  352 (363)
Q Consensus       317 ~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~  352 (363)
                      .+..+.++|-+++||+++....+|.++++.|.....
T Consensus        86 ~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   86 SLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV  121 (300)
T ss_pred             hhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence            445567899999999999999999999999988764

>PRK11431 multidrug efflux system protein; Provisional

Probab=91.98  E-value=1.7  Score=36.16  Aligned_cols=65  Identities=20%  Similarity=0.202  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhh-hhhhhhHHHHHHhhHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Q 017963          283 VLIWGAITFQLGVLGGTAVLF-LASTVLAGILNAIRVPITSIAAVILLHDPMSGFKILSLIVTFWGFGSY  351 (363)
Q Consensus       283 ~lv~tav~~q~~~lgv~glv~-~~ssL~a~vi~~~~lPv~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y  351 (363)
                      +++...+++.+....+..+-- .++++.++    +....+.+.++++|||++|+.|++++.+++.|+..-
T Consensus        35 ~i~~~~~sf~~Ls~al~~ip~gvaYAvW~G----iG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         35 TVTAMIVSMALLAWAMKSLPVGTAYAVWTG----IGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHhhCCcHhHHHHHHH----HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            344555555555555433322 22333333    233446789999999999999999999999998764

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=91.73  E-value=1.6  Score=43.60  Aligned_cols=142  Identities=14%  Similarity=0.210  Sum_probs=91.6

Q ss_pred             CcchHHHHHHHhhhhHHHHHHHhhcccccc--C---CCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCChhH-HHHHH
Q 017963           74 GTSKWIISWVAVAGWPLTALILLPTYFVFK--T---FPTPLDLKLTLAYIVLGFLSAADNLMYAYAYAYLPAST-AALLA  147 (363)
Q Consensus        74 g~~~w~~t~vq~ag~p~l~~p~~~~~~~~~--~---~~~~~~~~l~~~~~~~Gll~~~~n~ly~~gL~ylpvst-~sli~  147 (363)
                      -+=.|=+.|+.-.-|.-+++|....+..-.  .   +..|.  ..+....++|++.+..+..|-.+++|+-+|. +++..
T Consensus        30 k~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~--~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~l  107 (344)
T PF06379_consen   30 KGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPA--STLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIAL  107 (344)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCCh--hHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHH
Confidence            333688888888888888888886543211  0   11121  3344467889999999999999999987753 23333


Q ss_pred             hhhhHHHHHHHHHH-------hcccccHHHHHHHHHHHHHHHHhhccCC---CCCCCCCCcchhhhHHHHHHHHHHHHHH
Q 017963          148 SSSLVFSTLFGYFL-------VKNKLNAAMINAVVIITAAMTIIALDSD---SDRYGNITDRQYIMGFVWDILGSALHGL  217 (363)
Q Consensus       148 ssql~Ftalfs~~i-------lkek~t~~~i~svvllt~Gavll~~~~~---~~~~~~~s~~~~~~G~~l~L~Aa~l~gl  217 (363)
                      -+-.++-.+.--++       ..++-....+.|+++..+|.++.+....   .+..++.++.+.--|.++++.+.++++.
T Consensus       108 Gl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~  187 (344)
T PF06379_consen  108 GLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSAC  187 (344)
T ss_pred             HHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence            33333333332222       2234456889999999999999864322   1222334455667899999998888877

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=91.58  E-value=2  Score=35.89  Aligned_cols=32  Identities=25%  Similarity=0.272  Sum_probs=28.9

Q ss_pred             HH-HHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Q 017963          319 PI-TSIAAVILLHDPMSGFKILSLIVTFWGFGS  350 (363)
Q Consensus       319 Pv-~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~  350 (363)
                      ++ +.++++++|||++|..|++|.++++.|+..
T Consensus        74 ~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~  106 (111)
T PRK15051         74 FVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVI  106 (111)
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            44 669999999999999999999999999865

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=91.25  E-value=7.4  Score=33.80  Aligned_cols=123  Identities=17%  Similarity=0.123  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhcccchhHHH-H
Q 017963          205 FVWDILGSALHGLIFALSELVFVKLVGRRSFHVVLEQQVMVSLFAFAFTTIGVVVSKDFQGMKSEAKTFKGGVASYYL-V  283 (363)
Q Consensus       205 ~~l~L~Aa~l~gl~l~l~q~~~kkv~~~~~~~~vle~q~~~~l~a~~~~~vg~~~~g~~~~l~~e~~~f~~g~~~y~l-~  283 (363)
                      .++++.+.+.-++...++...-|+..+      ..+-.++....+++...+-.+..++. ..    +..+.-++++++ -
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs------~~~as~i~~~~G~i~~~i~~~~~~~~-~~----~~~~~~p~w~~lGG   71 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGS------PLVASFISFGVGFILLLIILLITGRP-SL----ASLSSVPWWAYLGG   71 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCc------cHHHHHHHHHHHHHHHHHHHHHhccc-cc----chhccCChHHhccH
Confidence            455666666666655555555555421      23344446667777776655555542 22    333333444444 1


Q ss_pred             HHHHH-HHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHHHH--HHHHHHh--------CCCCchhHHHHHHHHHHHHH
Q 017963          284 LIWGA-ITFQLGVLGGTAVLFLASTVLAGILNAIRVPITS--IAAVILL--------HDPMSGFKILSLIVTFWGFG  349 (363)
Q Consensus       284 lv~ta-v~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv~~--ilAvl~f--------~d~~~~~k~ig~~lvl~G~~  349 (363)
                      +.... +.-....+.-           -+...+....+..  +.+.++-        .+++++.|++|.++.+.|..
T Consensus        72 ~lG~~~V~~~~~~vp~-----------lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~  137 (138)
T PF04657_consen   72 LLGVFFVLSNIILVPR-----------LGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI  137 (138)
T ss_pred             HHHHHHHHHHHHHhhh-----------hhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence            11111 1111111111           1222222333333  2333322        37899999999999999975

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=86.72  E-value=0.42  Score=47.41  Aligned_cols=63  Identities=11%  Similarity=0.037  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHh
Q 017963          122 FLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTII  184 (363)
Q Consensus       122 ll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll  184 (363)
                      +...+.|+.=..-+..+++-|+++....+-++..+.|+.+++++.|+.++.|..++.+|..+=
T Consensus       243 v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y  305 (316)
T KOG1441|consen  243 VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLY  305 (316)
T ss_pred             HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHH
Confidence            334444443338999999999999999999999999999999999999999999999997764

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=85.21  E-value=1.9  Score=43.61  Aligned_cols=69  Identities=14%  Similarity=0.228  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHhhccCChhHHHHHHhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccCC
Q 017963          119 VLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDSD  189 (363)
Q Consensus       119 ~~Gll~~~~n~ly~~gL~ylpvst~sli~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~~  189 (363)
                      ++|  ..+.+++|..|.-.+++-+.++=.+.|.+..+++-.++-++++|+..++|.+..++|-+++...+.
T Consensus       325 lig--tvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~  393 (416)
T KOG2765|consen  325 LIG--TVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE  393 (416)
T ss_pred             HHH--HHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence            455  788899999999999999999999999999999999999999999999999999999777654443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	363
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.12
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.08
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	95.72
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	95.5

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.12  E-value=1.3e-05  Score=65.77  Aligned_cols=67  Identities=24%  Similarity=0.357  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHhhccCChhHHHHH-HhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccC
Q 017963          122 FLSAADNLMYAYAYAYLPASTAALL-ASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDS  188 (363)
Q Consensus       122 ll~~~~n~ly~~gL~ylpvst~sli-~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~  188 (363)
                      +..+...+++..+++++|.+.+.-+ ..+.++++++.++++++||+|+.|+.|+++..+|++++...+
T Consensus        38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4467778899999999999999777 899999999999999999999999999999999999886654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.08  E-value=6.9e-06  Score=70.36  Aligned_cols=67  Identities=24%  Similarity=0.357  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHhhccCChhHHHHH-HhhhhHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhccC
Q 017963          122 FLSAADNLMYAYAYAYLPASTAALL-ASSSLVFSTLFGYFLVKNKLNAAMINAVVIITAAMTIIALDS  188 (363)
Q Consensus       122 ll~~~~n~ly~~gL~ylpvst~sli-~ssql~Ftalfs~~ilkek~t~~~i~svvllt~Gavll~~~~  188 (363)
                      +.++...++|+.+++++|++.+.-+ ....+++++++++++++|++|+.++.|+++..+|++++...+
T Consensus        38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4477778899999999999987777 899999999999999999999999999999999999987654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=95.72  E-value=0.025  Score=48.09  Aligned_cols=70  Identities=10%  Similarity=-0.108  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhHHH-HHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHhcc
Q 017963          282 LVLIWGAITFQLGVLGGTAVLFLASTVLAGILNAIRVPI-TSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYGN  355 (363)
Q Consensus       282 l~lv~tav~~q~~~lgv~glv~~~ssL~a~vi~~~~lPv-~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y~~  355 (363)
                      +.++.+++++.+...++..+-.-    .++.+.+..-|+ +.++++++|||++++.|++|.++++.|+......+
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s----~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTG----IAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHhCChh----HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            34455555555544443332221    122221225577 55999999999999999999999999999876543

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=95.50  E-value=0.11  Score=42.10  Aligned_cols=38  Identities=8%  Similarity=-0.071  Sum_probs=32.6

Q ss_pred             hHHH-HHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHhc
Q 017963          317 RVPI-TSIAAVILLHDPMSGFKILSLIVTFWGFGSYIYG  354 (363)
Q Consensus       317 ~lPv-~~ilAvl~f~d~~~~~k~ig~~lvl~G~~~y~y~  354 (363)
                      .-|+ +.++++++|||++|..|++|.++++.|+......
T Consensus        66 ~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           66 VGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4466 6699999999999999999999999999876543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00