Citrus Sinensis ID: 017975

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
Protein Sequence
MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGGDHVKMHDMIRDMALWIANEIEEEEKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGER
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccHHHHHHcccccccccHHHHHHHHHccccccccccHHHHHHHHHHccccccccccHHHHHHHHcccccccccccEEccHHHHHHHHHHHHHcHHHcEEEEcccccccccccccccccEEEEEEcccccccccccccccccEEEcccccHHccHHHHHcccccccEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHcccccccccccEEEEcccccccccccccHHcccccEEEccccccccccccccccccccEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHccccccccHHHHHEcHcccccHHHHHHHHEHEccccccEEcHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccEEEEEcccccccEEccccccccccEEEcccccccEEcccHHHHcccccEEEccccccHHcccccccccHHHEEEcccccccccccHHHHcEEEEEEcccccccccccccccccccccccHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHcEEEccccccHHHHHHHHHHcccccEEEEEcccccHEEHHHcccc
Coil and Loop (DISEMBL)
masqchglplALETVGqamagkefpEEWRRAIEIISTSASKFEDMEKKVLSRLKFSydslpndelrscllycclfpedseirktDLIVYWESeglldsigGWDVLGALVRACLLeeggdhvkMHDMIRDMALWIANEIEEEEKFLVRAgvgltdapkieewegVKRISLMENEiqslpqiptcprlQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSlhhldlsstkvrgLPQELKALVLRMLHcgsnhwpiaeegnvlsddAESLMKEIHCLEQLNLIALSLrgsrgvenflkfpklqnITQAlhikdcnslplNLLHLANMEHLQLFSIWdsnledwnvdcager
Flexible Loop (DISEMBL)
masqchglplaLETVGQAMAGKEFPEEWRRAIEIIstsaskfedmEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGGDHVKMHDMIRDMALWIANEIEEEEKFLVRagvgltdapkieeWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGER
Low Complexity Region (SEG)
MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGGDHVKMHDMIRDMALWIANEIEEEEKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIsslvslhhldlssTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGER
Disordered region (IsUnstruct)
*********LALETVGQAMAGKEFPEEWRRAIEIISTSA**F****KKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGGDHVKMHDMIRDMALWIANEIEEEEKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC****
Disordered Region (DISOPRED)
MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIIST*********KKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGGDHVKMHDMIRDMALWIANEIEEEEKFLVRAGVGLTDAP*IEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVE***KFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGE*
Disordered Region (DISEMBL)
MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGGDHVKMHDMIRDMALWIANEIEEEEKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGER
Disordered Region (DISPRO)
MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGGDHVKMHDMIRDMALWIANEIEEEEKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCA***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGGDHVKMHDMIRDMALWIANEIEEEEKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAGER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	363	2.2.26 [Sep-21-2011]
Q9C8T9	898	Putative disease resistan	yes	no	0.881	0.356	0.413	1e-64
Q8RXS5	888	Probable disease resistan	no	no	0.966	0.395	0.378	1e-61
O82484	892	Putative disease resistan	no	no	0.719	0.292	0.451	4e-61
O64973	889	Disease resistance protei	no	no	0.950	0.388	0.392	4e-61
O22727	967	Probable disease resistan	no	no	0.972	0.365	0.376	1e-59
P60838	894	Probable disease resistan	no	no	0.696	0.282	0.466	3e-59
Q8L3R3	885	Disease resistance protei	no	no	0.955	0.392	0.406	3e-59
O64790	762	Probable disease resistan	no	no	0.944	0.450	0.375	2e-58
Q9FG91	848	Probable disease resistan	no	no	0.699	0.299	0.460	3e-58
Q940K0	889	Probable disease resistan	no	no	0.699	0.285	0.435	4e-57

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score =  247 bits (630), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 145/351 (41%), Positives = 218/351 (62%), Gaps = 31/351 (8%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           +A +C GLPLAL  V + M+ K   +EWR AI ++++ A+KF  M+ K+L  LK+SYDSL
Sbjct: 340 VAKKCCGLPLALNVVSETMSCKRTVQEWRHAIYVLNSYAAKFSGMDDKILPLLKYSYDSL 399

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSI--------GGWDVLGALVRAC 112
             ++++ CLLYC LFPED++IRK +LI YW  E ++D           G++++G+LVRA 
Sbjct: 400 KGEDVKMCLLYCALFPEDAKIRKENLIEYWICEEIIDGSEGIDKAENQGYEIIGSLVRAS 459

Query: 113 LLEE-----GGDHVKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKR 166
           LL E     G + V +HD++R+MALWIA+++ ++ E F+VRA VGL +  K+E W  V+R
Sbjct: 460 LLMEEVELDGANIVCLHDVVREMALWIASDLGKQNEAFIVRASVGLREILKVENWNVVRR 519

Query: 167 ISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV 226
           +SLM+N I  L     C  L TLLL+  H+E+I+  FF S+P L VL+LS N+YL+ELP 
Sbjct: 520 MSLMKNNIAHLDGRLDCMELTTLLLQSTHLEKISSEFFNSMPKLAVLDLSGNYYLSELPN 579

Query: 227 GISSLVSLHHLDLSSTKVRGLP---QELKALV------------LRMLHCGSNHWPIAEE 271
           GIS LVSL +L+LSST +R LP   QELK L+            +  + C  N   +   
Sbjct: 580 GISELVSLQYLNLSSTGIRHLPKGLQELKKLIHLYLERTSQLGSMVGISCLHNLKVLKLS 639

Query: 272 GNVLSDDAESLMKEIHCLEQLNLIALSLRG-SRGVENFLKFPKLQNITQAL 321
           G+  + D +++ KE+  LE L ++  ++   + G + FL   +L +  + L
Sbjct: 640 GSSYAWDLDTV-KELEALEHLEVLTTTIDDCTLGTDQFLSSHRLMSCIRFL 689

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  236 bits (603), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/375 (37%), Positives = 221/375 (58%), Gaps = 24/375 (6%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           +A +C GLPLAL  +G+ MA K   +EWR AI+++++SA++F  ME ++L  LK+SYD+L
Sbjct: 342 VAKKCRGLPLALNVIGETMAYKRTVQEWRSAIDVLTSSAAEFSGMEDEILPILKYSYDNL 401

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIG------GWDVLGALVRACLL 114
            +++L+ C  YC LFPED  I K DL+ YW  EG +D         G++++G LVR+CLL
Sbjct: 402 KSEQLKLCFQYCALFPEDHNIEKNDLVDYWIGEGFIDRNKGKAENQGYEIIGILVRSCLL 461

Query: 115 -EEGGDHVKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRISLMEN 172
            EE  + VKMHD++R+MALWIA++  +++E F+V+AG+   + P+IE+W+  +R+SLM N
Sbjct: 462 MEENQETVKMHDVVREMALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFN 521

Query: 173 EIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLV 232
            I+S+   P  P+L TLLL  N +  I+ SFF+ +P L VL+LS+N  L  LP  IS  V
Sbjct: 522 NIESIRDAPESPQLITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECV 581

Query: 233 SLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDAE--------SLMK 284
           SL +L LS T++R  P  L  L  ++L+    +  + E    +S            S   
Sbjct: 582 SLQYLSLSRTRIRIWPAGLVEL-RKLLYLNLEYTRMVESICGISGLTSLKVLRLFVSGFP 640

Query: 285 EIHCLEQLNL-------IALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLA 337
           E  C+            + ++L  +  +E FL   +L + T+AL I++ N     +  +A
Sbjct: 641 EDPCVLNELQLLENLQTLTITLGLASILEQFLSNQRLASCTRALRIENLNPQSSVISFVA 700

Query: 338 NMEHLQLFSIWDSNL 352
            M+ LQ     DS++
Sbjct: 701 TMDSLQELHFADSDI 715

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  235 bits (599), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 125/277 (45%), Positives = 180/277 (64%), Gaps = 16/277 (5%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           +A +C GLPLAL  +G+ MAGK   +EW  A++++++ A++F  M+  +L  LK+SYD+L
Sbjct: 341 VAGKCRGLPLALNVIGETMAGKRAVQEWHHAVDVLTSYAAEFSGMDDHILLILKYSYDNL 400

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLD-SIG-------GWDVLGALVRAC 112
            +  +RSC  YC L+PED  I+K  LI YW  EG +D +IG       G+++LG LVRAC
Sbjct: 401 NDKHVRSCFQYCALYPEDYSIKKYRLIDYWICEGFIDGNIGKERAVNQGYEILGTLVRAC 460

Query: 113 LLEEGGDH---VKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRIS 168
           LL E G +   VKMHD++R+MALW  +++ + +E+ +V+AG GL   PK+E+W  V+R+S
Sbjct: 461 LLSEEGKNKLEVKMHDVVREMALWTLSDLGKNKERCIVQAGSGLRKVPKVEDWGAVRRLS 520

Query: 169 LMENEIQSLPQIPTCPRLQTLLLEYNH-IEEITESFFQSLPSLRVLNLSVNHYLTELPVG 227
           LM N I+ +   P CP L TL L+ N  +  I+  FF+ +  L VL+LS NH L  LP  
Sbjct: 521 LMNNGIEEISGSPECPELTTLFLQENKSLVHISGEFFRHMRKLVVLDLSENHQLDGLPEQ 580

Query: 228 ISSLVSLHHLDLSSTKVRGLP---QELKALVLRMLHC 261
           IS LV+L +LDLS T + GLP   Q+LK L+   L C
Sbjct: 581 ISELVALRYLDLSHTNIEGLPACLQDLKTLIHLNLEC 617

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  235 bits (599), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 147/375 (39%), Positives = 214/375 (57%), Gaps = 30/375 (8%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           +A +C GLPLAL  +G+AMA K    EW  AI+++++SA  F  ME ++L  LK+SYD+L
Sbjct: 344 VARKCRGLPLALNVIGEAMACKRTVHEWCHAIDVLTSSAIDFSGMEDEILHVLKYSYDNL 403

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSI--------GGWDVLGALVRAC 112
             + ++SC LYC LFPED  I K  L+ YW SEG ++           G++++G LVRAC
Sbjct: 404 NGELMKSCFLYCSLFPEDYLIDKEGLVDYWISEGFINEKEGRERNINQGYEIIGTLVRAC 463

Query: 113 LL---EEGGDHVKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRIS 168
           LL   E    +VKMHD++R+MALWI++++ +++EK +VRAGVGL + PK+++W  V++IS
Sbjct: 464 LLLEEERNKSNVKMHDVVREMALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRKIS 523

Query: 169 LMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI 228
           LM NEI+ +     C  L TL L+ N + +I+  FF+ +P L VL+LS N  L ELP  I
Sbjct: 524 LMNNEIEEIFDSHECAALTTLFLQKNDVVKISAEFFRCMPHLVVLDLSENQSLNELPEEI 583

Query: 229 SSLVSLHHLDLSSTKVRGLPQEL----KALVLRMLHCG--------SNHWPIAEEGNVLS 276
           S L SL + +LS T +  LP  L    K + L + H          SN W +   G  L 
Sbjct: 584 SELASLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLG--LR 641

Query: 277 DDA----ESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLN 332
           D       SL+KE+  LE L +I L +  S   E  L   +L    + +  K      + 
Sbjct: 642 DSRLLLDMSLVKELQLLEHLEVITLDISSSLVAEPLLCSQRLVECIKEVDFKYLKEESVR 701

Query: 333 LLHLANMEHLQLFSI 347
           +L L  M +L+   I
Sbjct: 702 VLTLPTMGNLRKLGI 716

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|O22727|DRL16_ARATH Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1

 Score =  230 bits (586), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 146/388 (37%), Positives = 217/388 (55%), Gaps = 35/388 (9%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           +A +C GLPLAL  +G+ MA K   +EW  AI++++ SA++F DM+ K+L  LK+SYDSL
Sbjct: 341 VAQKCRGLPLALSCIGETMASKTMVQEWEHAIDVLTRSAAEFSDMQNKILPILKYSYDSL 400

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLL--DSI------GGWDVLGALVRAC 112
            ++ ++SC LYC LFPED +I    LI  W  EG +  D +       G+++LG L+RA 
Sbjct: 401 EDEHIKSCFLYCALFPEDDKIDTKTLINKWICEGFIGEDQVIKRARNKGYEMLGTLIRAN 460

Query: 113 LLEEGGD----HVKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRI 167
           LL         HV MHD++R+MALWIA++  +++E ++VRA VGL + PK+++W  V+R+
Sbjct: 461 LLTNDRGFVKWHVVMHDVVREMALWIASDFGKQKENYVVRARVGLHEIPKVKDWGAVRRM 520

Query: 168 SLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG 227
           SLM NEI+ +     C  L TL L+ N ++ ++  F + +  L VL+LS N    ELP  
Sbjct: 521 SLMMNEIEEITCESKCSELTTLFLQSNQLKNLSGEFIRYMQKLVVLDLSHNPDFNELPEQ 580

Query: 228 ISSLVSLHHLDLSSTKVRGLP---QELKALVLRMLHCGSNHWPIA-------------EE 271
           IS LVSL +LDLS T++  LP   +ELK L+   L        I+              E
Sbjct: 581 ISGLVSLQYLDLSWTRIEQLPVGLKELKKLIFLNLCFTERLCSISGISRLLSLRWLSLRE 640

Query: 272 GNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPL 331
            NV  D   S++KE+  LE L      LR +   E      +L  +   L I+     P 
Sbjct: 641 SNVHGD--ASVLKELQQLENLQ----DLRITESAELISLDQRLAKLISVLRIEGFLQKPF 694

Query: 332 NLLHLANMEHLQLFSIWDSNLEDWNVDC 359
           +L  LA+ME+L    + +S   + N+ C
Sbjct: 695 DLSFLASMENLYGLLVENSYFSEINIKC 722

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  229 bits (584), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 126/270 (46%), Positives = 179/270 (66%), Gaps = 17/270 (6%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           +A +C GLPLAL  +G+ MA K   +EWR AI+++S+ A++F  ME+ +L  LK+SYD+L
Sbjct: 344 VAGKCCGLPLALNVIGETMACKRMVQEWRNAIDVLSSYAAEFPGMEQ-ILPILKYSYDNL 402

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDS--------IGGWDVLGALVRAC 112
             ++++ C LYC LFPED  + K  LI YW  EG +D           G++++G LVRAC
Sbjct: 403 NKEQVKPCFLYCSLFPEDYRMEKERLIDYWICEGFIDENESRERALSQGYEIIGILVRAC 462

Query: 113 LLEE---GGDHVKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRIS 168
           LL E     + VKMHD++R+MALWIA+++ E +E+ +V+ GVGL + PK++ W  V+R+S
Sbjct: 463 LLLEEAINKEQVKMHDVVREMALWIASDLGEHKERCIVQVGVGLREVPKVKNWSSVRRMS 522

Query: 169 LMENEIQSLPQIPTCPRLQTLLLEYN-HIEEITESFFQSLPSLRVLNLSVNHYLTELPVG 227
           LMENEI+ L   P C  L TL L+ N  +  I++ FF+ +P L VL+LS N  L +LP  
Sbjct: 523 LMENEIEILSGSPECLELTTLFLQKNDSLLHISDEFFRCIPMLVVLDLSGNSSLRKLPNQ 582

Query: 228 ISSLVSLHHLDLSSTKVRGLP---QELKAL 254
           IS LVSL +LDLS T ++ LP   QELK L
Sbjct: 583 ISKLVSLRYLDLSWTYIKRLPVGLQELKKL 612

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  229 bits (584), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 154/379 (40%), Positives = 222/379 (58%), Gaps = 32/379 (8%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           ++ +C GLPLAL  +G+ M+ K   +EWR A E++ TSA+ F  ME ++L  LK+SYDSL
Sbjct: 344 VSEKCCGLPLALNVIGETMSFKRTIQEWRHATEVL-TSATDFSGMEDEILPILKYSYDSL 402

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSI--------GGWDVLGALVRAC 112
             ++ +SC LYC LFPED EIRK  LI YW  EG +            G+D+LG LVR+ 
Sbjct: 403 NGEDAKSCFLYCSLFPEDFEIRKEMLIEYWICEGFIKEKQGREKAFNQGYDILGTLVRSS 462

Query: 113 LLEEGG---DHVKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRIS 168
           LL EG    D V MHDM+R+MALWI +++ + +E+ +V+AG+GL + P++E W  VKR+S
Sbjct: 463 LLLEGAKDKDVVSMHDMVREMALWIFSDLGKHKERCIVQAGIGLDELPEVENWRAVKRMS 522

Query: 169 LMENEIQSLPQIPTCPRLQTLLLEYNH-IEEITESFFQSLPSLRVLNLSVNHYLTELPVG 227
           LM N  + +   P C  L TL L+ N+ + +I+  FF+ +PSL VL+LS NH L+ELP  
Sbjct: 523 LMNNNFEKILGSPECVELITLFLQNNYKLVDISMEFFRCMPSLAVLDLSENHSLSELPEE 582

Query: 228 ISSLVSLHHLDLSSTKVRGLP---QELKALV------LRMLHCGSNHWPIAEEGNVLSDD 278
           IS LVSL +LDLS T +  LP    EL+ LV       R L   S    ++    +   D
Sbjct: 583 ISELVSLQYLDLSGTYIERLPHGLHELRKLVHLKLERTRRLESISGISYLSSLRTLRLRD 642

Query: 279 AES-----LMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLP--- 330
           +++     LMKE+  LE L LI   +  S  V     +P++    Q ++I+D    P   
Sbjct: 643 SKTTLDTGLMKELQLLEHLELITTDI-SSGLVGELFCYPRVGRCIQHIYIRDHWERPEES 701

Query: 331 LNLLHLANMEHLQLFSIWD 349
           + +L L  + +L   SIW+
Sbjct: 702 VGVLVLPAIHNLCYISIWN 720

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64790|DRL17_ARATH Probable disease resistance protein At1g61300 OS=Arabidopsis thaliana GN=At1g61300 PE=2 SV=2

 Score =  226 bits (576), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 141/376 (37%), Positives = 218/376 (57%), Gaps = 33/376 (8%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           +A +C GLPLAL  +G+ MA K   +EW  AI++++ SA++F +M  K+L  LK+SYDSL
Sbjct: 229 VAQKCRGLPLALSVIGETMASKTMVQEWEHAIDVLTRSAAEFSNMGNKILPILKYSYDSL 288

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLL--DSI------GGWDVLGALVRAC 112
            ++ ++SC LYC LFPED EI    LI YW  EG +  D +       G+++LG L  A 
Sbjct: 289 GDEHIKSCFLYCALFPEDDEIYNEKLIDYWICEGFIGEDQVIKRARNKGYEMLGTLTLAN 348

Query: 113 LLEE-GGDHVKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRISLM 170
           LL + G +HV MHD++R+MALWIA++  +++E F+VRA VGL + P+ ++W  V+R+SLM
Sbjct: 349 LLTKVGTEHVVMHDVVREMALWIASDFGKQKENFVVRARVGLHERPEAKDWGAVRRMSLM 408

Query: 171 ENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISS 230
           +N I+ +     C  L TL L+ N ++ ++  F + +  L VL+LS N    +LP  IS 
Sbjct: 409 DNHIEEITCESKCSELTTLFLQSNQLKNLSGEFIRYMQKLVVLDLSYNRDFNKLPEQISG 468

Query: 231 LVSLHHLDLSSTKVRGLPQELK----------ALVLRM-----LHCGSNHWPIAEEGNVL 275
           LVSL  LDLS+T ++ LP  LK          A  +R+     +    +   +   G+ +
Sbjct: 469 LVSLQFLDLSNTSIKQLPVGLKKLKKLTFLNLAYTVRLCSISGISRLLSLRLLRLLGSKV 528

Query: 276 SDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLH 335
             DA S++KE+  L+ L  +A++L     +       +L N+   L I+     P +L  
Sbjct: 529 HGDA-SVLKELQKLQNLQHLAITLSAELSLNQ-----RLANLISILGIEGFLQKPFDLSF 582

Query: 336 LANMEHLQLFSIWDSN 351
           LA+ME+L   S+W  N
Sbjct: 583 LASMENLS--SLWVKN 596

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1

 Score =  225 bits (574), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 122/265 (46%), Positives = 170/265 (64%), Gaps = 11/265 (4%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           +A++CHGLPLAL  +G+AM  KE  +EWR AI ++++   KF  ME+++L  LKFSYDSL
Sbjct: 339 VAAKCHGLPLALNVIGKAMVCKETVQEWRHAINVLNSPGHKFPGMEERILPILKFSYDSL 398

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLD--------SIGGWDVLGALVRAC 112
            N E++ C LYC LFPED EI K  LI YW  EG ++        +  G+D++G LVRA 
Sbjct: 399 KNGEIKLCFLYCSLFPEDFEIEKDKLIEYWICEGYINPNRYEDGGTNQGYDIIGLLVRAH 458

Query: 113 LLEEG--GDHVKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRISL 169
           LL E    D VKMHD+IR+MALWI ++   ++E   V++G  +   P    WE V+++SL
Sbjct: 459 LLIECELTDKVKMHDVIREMALWINSDFGNQQETICVKSGAHVRLIPNDISWEIVRQMSL 518

Query: 170 MENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIS 229
           +  +++ +   P CP L TLLL YN + +I+  FF  +P L VL+LS N  L ELP  IS
Sbjct: 519 ISTQVEKIACSPNCPNLSTLLLPYNKLVDISVGFFLFMPKLVVLDLSTNWSLIELPEEIS 578

Query: 230 SLVSLHHLDLSSTKVRGLPQELKAL 254
           +L SL +L+LS T ++ LP  LK L
Sbjct: 579 NLGSLQYLNLSLTGIKSLPVGLKKL 603

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score =  222 bits (565), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 115/264 (43%), Positives = 171/264 (64%), Gaps = 10/264 (3%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           +A +C GLPLAL  +G+ M+ K   +EW  AI + +TSA++F DM+ K+L  LK+SYDSL
Sbjct: 340 VAQKCRGLPLALNVIGETMSSKTMVQEWEHAIHVFNTSAAEFSDMQNKILPILKYSYDSL 399

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLL--DSI------GGWDVLGALVRAC 112
            ++ ++SC LYC LFPED EI    LI YW  EG +  D +       G+ +LG L RA 
Sbjct: 400 GDEHIKSCFLYCALFPEDGEIYNEKLIDYWICEGFIGEDQVIKRARNKGYAMLGTLTRAN 459

Query: 113 LLEEGGDHV-KMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRISLM 170
           LL + G +   MHD++R+MALWIA++  +++E F+V+AGVGL + PK+++W  V+++SLM
Sbjct: 460 LLTKVGTYYCVMHDVVREMALWIASDFGKQKENFVVQAGVGLHEIPKVKDWGAVRKMSLM 519

Query: 171 ENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISS 230
           +N+I+ +     C  L TL L+ N ++ +  +F + +  L VL+LS N    +LP  IS 
Sbjct: 520 DNDIEEITCESKCSELTTLFLQSNKLKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISG 579

Query: 231 LVSLHHLDLSSTKVRGLPQELKAL 254
           LVSL  LDLS+T +  +P  LK L
Sbjct: 580 LVSLQFLDLSNTSIEHMPIGLKEL 603

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
24461865	892	NBS-LRR type disease resistance protein	0.986	0.401	0.476	1e-78
24461866	890	NBS-LRR type disease resistance protein	0.991	0.404	0.451	5e-78
225443158	903	PREDICTED: probable disease resistance p	0.986	0.396	0.439	6e-75
24461864	899	NBS-LRR type disease resistance protein	0.942	0.380	0.440	1e-74
224055915	880	cc-nbs-lrr resistance protein [Populus t	0.988	0.407	0.415	2e-74
359482672	905	PREDICTED: probable disease resistance p	0.988	0.396	0.422	6e-73
359482674	991	PREDICTED: probable disease resistance p	0.961	0.352	0.418	1e-72
297743409	1145	unnamed protein product [Vitis vinifera]	0.920	0.291	0.422	1e-72
225442867	893	PREDICTED: probable disease resistance p	0.961	0.390	0.416	2e-72
255553103	910	Disease resistance protein RPS5, putativ	0.931	0.371	0.421	7e-71

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 192/403 (47%), Positives = 252/403 (62%), Gaps = 45/403 (11%)

Query: 2   ASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLP 61
           A +C GLPLAL T+G+AMA K+ PEEW  AIE++ TS+S+F  +  +V   LKFSYDSLP
Sbjct: 345 ARECGGLPLALITIGRAMACKKTPEEWSYAIEVLRTSSSQFPGLGNEVYPLLKFSYDSLP 404

Query: 62  NDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLL---DSIG----GWDVLGALVRACLL 114
           +D +RSC LYC L+PED  I K  LI  W  E LL   D  G    G+ +LG L+ ACLL
Sbjct: 405 SDTIRSCHLYCSLYPEDYCISKEKLIDCWIGERLLTERDRTGEQKEGYHILGILLHACLL 464

Query: 115 EEGGD-HVKMHDMIRDMALWIANEIE-EEEKFLVRAGVGLTDAPKIEEWEGVKRISLMEN 172
           EEGGD  VKMHD+IRDMALWIA +IE E+E F V AGVGL +AP +  WE  +R+SLM+N
Sbjct: 465 EEGGDGEVKMHDVIRDMALWIACDIEREKENFFVYAGVGLVEAPDVRGWEKARRLSLMQN 524

Query: 173 EIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLV 232
           +I++L +IPTCP L TLLL  N++ +I   FFQ +PSL+VLNLS +  LT+LPVGIS LV
Sbjct: 525 QIRNLSEIPTCPHLLTLLLNENNLRKIQNYFFQFMPSLKVLNLS-HCELTKLPVGISELV 583

Query: 233 SLHHLDLSSTKVRGLPQELKAL-----------------------------VLRMLHCGS 263
           SL HLDLS + +   P ELKAL                             VLRM     
Sbjct: 584 SLQHLDLSESDIEEFPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLRVLRMFGASH 643

Query: 264 NHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQAL-- 321
           N +  A E ++L    E +++E+  L+ L +I L+LR S G+++FL   KL++ TQAL  
Sbjct: 644 NAFDEASENSILFGGGELIVEELLGLKHLEVITLTLRSSYGLQSFLNSHKLRSCTQALLL 703

Query: 322 -HIKDCNSLPLNLLHLANMEHLQLFSIWDSN-LEDWNVDCAGE 362
            H KD  SL ++   LA+++ L    I +S  LE+  +D A E
Sbjct: 704 QHFKDSTSLEVS--ALADLKQLNRLQIANSVILEELKMDYAEE 744

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  297 bits (761), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 181/401 (45%), Positives = 245/401 (61%), Gaps = 41/401 (10%)

Query: 2   ASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLP 61
           A +C GLPLAL T+G+AMA K+ PEEW  AIE++ TS+S+F  +  +V   LKFSYDSLP
Sbjct: 344 AKECGGLPLALITIGRAMACKKTPEEWTYAIEVLRTSSSQFPGLGNEVYPLLKFSYDSLP 403

Query: 62  NDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLL---DSIG----GWDVLGALVRACLL 114
           +D +RSCLLYCCL+PED  I K  LI  W  EG L   D  G    G+ +LG L+ ACLL
Sbjct: 404 SDTIRSCLLYCCLYPEDYCISKEILIDCWIGEGFLTERDRFGEQNQGYHILGILLHACLL 463

Query: 115 EEGGD-HVKMHDMIRDMALWIANEIE-EEEKFLVRAGVGLTDAPKIEEWEGVKRISLMEN 172
           EEGGD  VKMHD++RDMALWIA  IE E++ FLV AGVGL +AP +  WE  +R+SLM N
Sbjct: 464 EEGGDGEVKMHDVVRDMALWIACAIEKEKDNFLVYAGVGLIEAPDVSGWEKARRLSLMHN 523

Query: 173 EIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLV 232
           +I +L ++ TCP L TL L  N ++ I   FF+ +PSL+VLNL+ +  LT LP GIS LV
Sbjct: 524 QITNLSEVATCPHLLTLFLNENELQMIHNDFFRFMPSLKVLNLA-DSSLTNLPEGISKLV 582

Query: 233 SLHHLDLSSTKVRGLPQELKAL-----------------------------VLRMLHCGS 263
           SL HLDLS + +  LP ELKAL                             VLRM     
Sbjct: 583 SLQHLDLSKSSIEELPLELKALVNLKCLNLEYTWSLTTIPRQLISNLSRLHVLRMFAASH 642

Query: 264 NHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHI 323
           + +  A E ++L    E +++E+  L+ L +I+ +LR S G+++FL   KL++ T+AL +
Sbjct: 643 SAFDRASEDSILFGGGELIVEELLGLKYLEVISFTLRSSHGLQSFLSSHKLRSCTRALLL 702

Query: 324 KDCN-SLPLNLLHLANMEHLQLFSIWD-SNLEDWNVDCAGE 362
           +  N S  L +  LA+++ L    I +   LE+  +D   E
Sbjct: 703 QCFNDSTSLEVSALADLKQLNRLWITECKKLEELKMDYTRE 743

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443158|ref|XP_002263674.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  287 bits (734), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 177/403 (43%), Positives = 246/403 (61%), Gaps = 45/403 (11%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           +  +C GLPLAL T G+ MA K+ P+EW+ AI+++ +S+S F  M  +V S LKFSYD+L
Sbjct: 342 IVKECLGLPLALVTTGRTMACKKAPQEWKFAIKMLQSSSSSFPGMRDEVFSLLKFSYDNL 401

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIG--------GWDVLGALVRAC 112
           P+D  RSC LYC L+PED++I K DLI  W  EG LD           G+D++G+L+RAC
Sbjct: 402 PSDTARSCFLYCSLYPEDNDIFKEDLIDCWICEGFLDEFDDRDGARNQGFDIIGSLIRAC 461

Query: 113 LLEEGGDH-VKMHDMIRDMALWIANEIEE-EEKFLVRAGVGLTDAPKIEEWEGVKRISLM 170
           LLEE  ++ VKMHD+IRDMALWIA E    ++KFLV+AG GLT+ P+I +W+GV+R+SLM
Sbjct: 462 LLEESREYFVKMHDVIRDMALWIACECGRVKDKFLVQAGAGLTELPEIGKWKGVERMSLM 521

Query: 171 ENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISS 230
            N I+ L Q+PTCP L TL L  N +E IT+ FFQ +P L+VLNLS +  ++ELP  I  
Sbjct: 522 SNHIEKLTQVPTCPNLLTLFLNNNSLEVITDGFFQLMPRLQVLNLSWSR-VSELPTEIFR 580

Query: 231 LVSLHHLDLSSTKVRGLPQELKAL-----------------------------VLRMLHC 261
           LVSL +LDLS T +  LP E K L                             VL+M HC
Sbjct: 581 LVSLRYLDLSWTCISHLPNEFKNLVNLKYLNLDYTQQLGIIPRHVVSSMSRLQVLKMFHC 640

Query: 262 GSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQAL 321
           G   + + E+ NVLSD  E+L+ E+ CL  L  + +++R +  ++  L   K++  TQ L
Sbjct: 641 G--FYGVGED-NVLSDGNEALVNELECLNNLCDLNITIRSASALQRCLCSEKIEGCTQDL 697

Query: 322 HIKDCNSL-PLNLLHLANMEHLQLFSIWD-SNLEDWNVDCAGE 362
            ++  N L  L++  L NM+ L    I D + L D N++   E
Sbjct: 698 FLQFFNGLNSLDISFLENMKRLDTLHISDCATLADLNINGTDE 740

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 171/388 (44%), Positives = 229/388 (59%), Gaps = 46/388 (11%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           +A +C  LPLAL   G+AMA K+ P EWR AI+++ TSAS+F  +E  VL  LKFSYDSL
Sbjct: 346 VAKECGCLPLALIVTGRAMACKKTPAEWRDAIKVLQTSASEFPGLENNVLRVLKFSYDSL 405

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIG-------GWDVLGALVRACL 113
           P+D  RSCLLYCCLFPED  I K +LI  W  EG L   G       G  +LG +V ACL
Sbjct: 406 PDDTTRSCLLYCCLFPEDYRIYKENLIDCWIGEGFLKVTGKYELQDRGHTILGNIVHACL 465

Query: 114 LEEGGDH-VKMHDMIRDMALWIANEIE-------EEEKFLVRAGVGLTDAPKIEEWEGVK 165
           LEE GD  VKMHD+IRDM LWIA + E       ++E +LV  G GLT+AP + EWE  K
Sbjct: 466 LEEEGDDVVKMHDVIRDMTLWIACDTEKTEDTEKKKENYLVYEGAGLTEAPNVREWENAK 525

Query: 166 RISLMENEIQSLPQIPTCPRLQTLLLEYN-HIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
           R+SLME +I++L ++PTC  L TL L +N  +E IT  FF+S+P L+VLNLS    ++  
Sbjct: 526 RLSLMETQIRNLSEVPTCLHLLTLFLVFNEELEMITGDFFKSMPCLKVLNLSGARRMSSF 585

Query: 225 PVGISSLVSLHHLDLSSTKVRGLPQELKAL-----------------------------V 255
           P+G+S LVSL HLDLS T ++ LP+EL AL                             V
Sbjct: 586 PLGVSVLVSLQHLDLSGTAIQELPKELNALENLKSLNLDQTHYLITIPRQLISRFSCLVV 645

Query: 256 LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQ 315
           LRM   G          + L    + L++ +  L+ L +++L+L  S+ ++  L   KL+
Sbjct: 646 LRMFGVGDWSPNGKRNDSDLFSGGDLLVEALRGLKHLEVLSLTLNNSQDLQCVLNSEKLR 705

Query: 316 NITQALHIKDCN-SLPLNLLHLANMEHL 342
           + TQAL++     S PL++  LA +EHL
Sbjct: 706 SCTQALYLHSFKRSEPLDVSALAGLEHL 733

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055915|ref|XP_002298700.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222845958|gb|EEE83505.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 167/402 (41%), Positives = 240/402 (59%), Gaps = 43/402 (10%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           +A +C GLPLAL T+G+AMA K+ P+EWR AIE++  SAS+F  M  +V   LKFSYD+L
Sbjct: 343 VAKECGGLPLALITIGRAMACKKTPQEWRHAIEVLRKSASEFSGMGDEVFPLLKFSYDNL 402

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIGG--------WDVLGALVRAC 112
              ++R+C LYC LFPED  I K DLI YW  EG+ D   G        + V+G L+ AC
Sbjct: 403 SKQKIRTCFLYCSLFPEDFLINKNDLIDYWIGEGIFDGSDGREVVENWGYHVIGCLLHAC 462

Query: 113 LLEEGGDHVKMHDMIRDMALWIANEIE-EEEKFLVRAGVGLTDAPKIEEWEGVKRISLME 171
           LLE+  D V+MHD+IRDMALWIA++IE +++ F V+ G   + A ++ +WEGV+++SLM 
Sbjct: 463 LLEDKDDCVRMHDVIRDMALWIASDIERDQQNFFVQTGAQSSKALEVGKWEGVRKVSLMA 522

Query: 172 NEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSL 231
           N I  L   P C  L+TL L   H+ +I+  FFQ +P+L VL+LS N+ L  LP  +  L
Sbjct: 523 NHIVHLSGTPNCSNLRTLFLGSIHLNKISRGFFQFMPNLTVLDLSNNNSLLGLPRDVWKL 582

Query: 232 VSLHHLDLSSTKVRGLPQELKALV-----------------------------LRMLHCG 262
           VSL +L+LS T ++ LP EL  LV                             LRM  CG
Sbjct: 583 VSLQYLNLSRTGIKELPTELNELVKLRYLNLEYTHSLYLLPHGVISGFPMMRILRMFRCG 642

Query: 263 SNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALH 322
           S+    A E  +LS D ESL++E+ CLE+LN++ +++R +  +E    F  +Q+ T+ L+
Sbjct: 643 SSEQ--AAEDCILSRD-ESLVEELQCLEELNMLTVTIRSAAALERLSSFQGMQSSTRVLY 699

Query: 323 IKDC-NSLPLNLLHLANMEHLQLFSIWD-SNLEDWNVDCAGE 362
           ++   +S  +N   LANM++L    I    +LE+  +D  GE
Sbjct: 700 LELFHDSKLVNFSSLANMKNLDTLHICHCGSLEELQIDWEGE 741

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482672|ref|XP_003632805.1| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  280 bits (717), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 171/405 (42%), Positives = 245/405 (60%), Gaps = 46/405 (11%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           +A +C GLPL L T+G+AMA K+ PEEW+ AI+++ +SASKF  M  +V   LK+SYD L
Sbjct: 340 VAQECCGLPLVLTTMGRAMACKKTPEEWKYAIKVLRSSASKFPGMGDRVFPLLKYSYDCL 399

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIG--------GWDVLGALVRAC 112
           P +  RSC LYC L+PED ++ K  LI  W  EG LD           G++++G L+ AC
Sbjct: 400 PTEVSRSCFLYCSLYPEDYQMPKLSLINRWICEGFLDEFDDMEGAKNQGYNIIGTLIHAC 459

Query: 113 LLEEGG-DH-VKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRISL 169
           LLEEG  D+ VK+HD+IRDMALWI  E  +E++KFLV+AG  LT+AP++ EW G KRISL
Sbjct: 460 LLEEGDVDYKVKLHDVIRDMALWIGCETGKEQDKFLVKAGSTLTEAPEVAEWMGPKRISL 519

Query: 170 MENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIS 229
           M+N+I+ L   P CP L TL L  N ++ I+++FFQ +PSLRVL+LS N  +TELP GIS
Sbjct: 520 MDNQIEELTGSPKCPNLSTLFLADNSLKMISDTFFQFMPSLRVLDLSKNS-ITELPRGIS 578

Query: 230 SLVSLHHLDLSSTKVRGLPQELKAL-----------------------------VLRMLH 260
           +LVSL +L+LS T ++ LP ELK L                             V+ M +
Sbjct: 579 NLVSLQYLNLSQTNIKELPIELKNLDKLKCLVLVDMPQLSSIPEQLISSLSMLQVIDMFN 638

Query: 261 CGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQA 320
            G +   + ++G +LSDD E+L++E+  L+ L+ + +S++ +   +  L   KL+     
Sbjct: 639 SGISERTVLKDG-ILSDDNEALVQELESLKYLHGLGVSVKSASAFKRLLSSYKLRICISG 697

Query: 321 LHIKDCNSLPLNLLHLANMEHLQLFSIWDS---NLEDWNVDCAGE 362
           L +K+ N      L   +     L S++ S   +LED  +D AGE
Sbjct: 698 LCLKNFNGSSSLNLTSLSNAKC-LSSLYISKCGSLEDLEIDWAGE 741

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482674|ref|XP_002281708.2| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 169/404 (41%), Positives = 241/404 (59%), Gaps = 55/404 (13%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           +A +C GLPL L T+G+AMA K+ P+EW+ AI +  +SASK   +  +V   LK+SYDSL
Sbjct: 340 VAQECCGLPLVLTTMGKAMACKKTPQEWKHAIRVFQSSASKLPGIGDRVFPLLKYSYDSL 399

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIGGW--------DVLGALVRAC 112
           P +  RSC LYC L+PED E+ K+ LI  W  EG LD    W        +++G L+ AC
Sbjct: 400 PTEVARSCFLYCSLYPEDDEMSKSSLINRWICEGFLDEFDDWEGAENQGYNIIGTLIHAC 459

Query: 113 LLEEG--GDHVKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRISL 169
           LLEEG     VK+HD+IRDMALWIA E  +E++KFLV+AG  LT+AP++ EW G KRISL
Sbjct: 460 LLEEGDVDYQVKLHDVIRDMALWIARETGKEQDKFLVKAGSTLTEAPEVAEWMGPKRISL 519

Query: 170 MENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIS 229
           M N+I+ L   P CP L TL L  N ++ IT+SFFQ +P+LRVL+LS N  +TELP GIS
Sbjct: 520 MNNQIEKLTGSPICPNLSTLFLRENSLKMITDSFFQFMPNLRVLDLSDNS-ITELPQGIS 578

Query: 230 SLVSLHHLDLSSTKVRGLPQELKAL-----------------------------VLRMLH 260
           +LVSL +LDLS T+++ LP ELK L                             V+ M +
Sbjct: 579 NLVSLRYLDLSLTEIKELPIELKNLGNLKCLLLSDMPQLSSIPEQLISSLLMLQVIDMSN 638

Query: 261 CGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQA 320
           CG            + D  E+L++E+  L+ L+ + +++  +   +  L   KL++   +
Sbjct: 639 CG------------ICDGDEALVEELESLKYLHDLGVTITSTSAFKRLLSSDKLRSCISS 686

Query: 321 LHIKDCN-SLPLNLLHLANMEHLQLFSIWD-SNLEDWNVDCAGE 362
           + +++ N S  LNL  L N+++L   SI +  +LE+  +D A E
Sbjct: 687 VCLRNFNGSSSLNLTSLCNVKNLCELSISNCGSLENLVIDWAWE 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743409|emb|CBI36276.3| unnamed protein product [Vitis vinifera]

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 164/388 (42%), Positives = 232/388 (59%), Gaps = 54/388 (13%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           +A +C GLPL L T+G+AMA K+ P+EW+ AI +  +SASK   +  +V   LK+SYDSL
Sbjct: 172 VAQECCGLPLVLTTMGKAMACKKTPQEWKHAIRVFQSSASKLPGIGDRVFPLLKYSYDSL 231

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIGGW--------DVLGALVRAC 112
           P +  RSC LYC L+PED E+ K+ LI  W  EG LD    W        +++G L+ AC
Sbjct: 232 PTEVARSCFLYCSLYPEDDEMSKSSLINRWICEGFLDEFDDWEGAENQGYNIIGTLIHAC 291

Query: 113 LLEEG--GDHVKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRISL 169
           LLEEG     VK+HD+IRDMALWIA E  +E++KFLV+AG  LT+AP++ EW G KRISL
Sbjct: 292 LLEEGDVDYQVKLHDVIRDMALWIARETGKEQDKFLVKAGSTLTEAPEVAEWMGPKRISL 351

Query: 170 MENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIS 229
           M N+I+ L   P CP L TL L  N ++ IT+SFFQ +P+LRVL+LS N  +TELP GIS
Sbjct: 352 MNNQIEKLTGSPICPNLSTLFLRENSLKMITDSFFQFMPNLRVLDLSDNS-ITELPQGIS 410

Query: 230 SLVSLHHLDLSSTKVRGLPQELKAL-----------------------------VLRMLH 260
           +LVSL +LDLS T+++ LP ELK L                             V+ M +
Sbjct: 411 NLVSLRYLDLSLTEIKELPIELKNLGNLKCLLLSDMPQLSSIPEQLISSLLMLQVIDMSN 470

Query: 261 CGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQA 320
           CG            + D  E+L++E+  L+ L+ + +++  +   +  L   KL++   +
Sbjct: 471 CG------------ICDGDEALVEELESLKYLHDLGVTITSTSAFKRLLSSDKLRSCISS 518

Query: 321 LHIKDCN-SLPLNLLHLANMEHLQLFSI 347
           + +++ N S  LNL  L N+++L   SI
Sbjct: 519 VCLRNFNGSSSLNLTSLCNVKNLCELSI 546

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442867|ref|XP_002281592.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 168/403 (41%), Positives = 242/403 (60%), Gaps = 54/403 (13%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           +A +C GLPL L T+G+AMA K+ P+EW+ A +++ +SASKF  M  +V   LK+SYD L
Sbjct: 340 VAQECCGLPLVLTTIGRAMACKKTPQEWKYAFKVLQSSASKFPGMSDRVFPLLKYSYDCL 399

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIG--------GWDVLGALVRAC 112
           P + +RSC LYC LFPED +I K  +I  W  EGLLD           G++++G L+ AC
Sbjct: 400 PTEVVRSCFLYCSLFPEDYQIPKIAMIKRWFCEGLLDEFDDMKGAENQGYNIIGTLIHAC 459

Query: 113 LLEEGG-DH-VKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRISL 169
           LLEEG  D+ VK+HD+IRDMALWIA E  +E++KFLV+A  GLT+AP++  W G KRISL
Sbjct: 460 LLEEGDVDYVVKLHDVIRDMALWIACETGKEQDKFLVQASSGLTEAPEVARWMGPKRISL 519

Query: 170 MENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIS 229
           + N+I+ L   P CP L TL L+ N ++ IT+SFFQ +P+LRVL+LS N  +TELP GIS
Sbjct: 520 IGNQIEKLTGSPNCPNLSTLFLQDNSLKMITDSFFQFMPNLRVLDLSRNA-MTELPQGIS 578

Query: 230 SLVSLHHLDLSSTKVRGLPQELKAL----------------------------VLRMLHC 261
           +LVSL +L+LS T ++ LP ELK L                            V+ M +C
Sbjct: 579 NLVSLQYLNLSQTNIKELPIELKNLGKLKFLLLHRMRLSSIPEQLISSLSMLQVIDMFNC 638

Query: 262 GSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQAL 321
           G            + D  E+L++E+  L+ L+ + +++  +   +  L   KL++    +
Sbjct: 639 G------------ICDGDEALVEELESLKYLHDLGVTITSASAFKRLLSSDKLKSCISGV 686

Query: 322 HIKDCN-SLPLNLLHLANMEHLQ-LFSIWDSNLEDWNVDCAGE 362
            +++ N S  LNL  L N++ L+ LF     + ED  +D A E
Sbjct: 687 CLENFNGSSSLNLTSLCNVKRLRNLFISNCGSSEDLEIDWAWE 729

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553103|ref|XP_002517594.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223543226|gb|EEF44758.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  273 bits (699), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 161/382 (42%), Positives = 234/382 (61%), Gaps = 44/382 (11%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           +A +C GLPLAL T+ +AMA +   +EW  A+E++S   S F  M   V + LK+SYDSL
Sbjct: 344 IAKKCQGLPLALITIARAMASRRTLQEWNHAVEVLSNPTSDFHGMWDNVFTILKYSYDSL 403

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSI--------GGWDVLGALVRAC 112
           PND+++SC LYC LFP + +I K+DLI YW  E   D           G  ++G LVRAC
Sbjct: 404 PNDKIKSCFLYCTLFPRNFKIFKSDLIAYWMCEEFWDEYDNGSSANDKGHHIMGVLVRAC 463

Query: 113 LLEEGGDHVKMHDMIRDMALWIA-NEIEEEEKFLVRAGVGLTDAPKIEEWEGVKRISLME 171
           LLE+ GD+VKMHD+IRDM L IA N    +E  LV+AG  L +AP+  +WE +KR+SLME
Sbjct: 464 LLEDEGDYVKMHDVIRDMGLRIACNCARTKETNLVQAGALLIEAPEARKWEHIKRMSLME 523

Query: 172 NEIQSLPQIPTCPRLQTLLLEYN-HIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISS 230
           N I+ L ++PTCP L TL L +N ++  I   FF+S+ +L VL+LS    + ELP GIS 
Sbjct: 524 NSIRVLTEVPTCPELFTLFLCHNPNLVMIRGDFFRSMKALTVLDLSKTG-IQELPSGISD 582

Query: 231 LVSLHHLDLSSTKVRGLP------QELKAL-----------------------VLRMLHC 261
           +VSL +L++S T +  LP      ++LK L                        LRML C
Sbjct: 583 MVSLQYLNISYTVINQLPAGLMRLEKLKYLNLEHNENLYMIPKQLVRSLSRLQALRMLGC 642

Query: 262 GSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQAL 321
           G  H+P A++ N+LSD     +KE+ CLE LN +++++R +  +++F    KL++  +A+
Sbjct: 643 GPVHYPQAKD-NLLSDGV--CVKELQCLENLNRLSITVRCASALQSFFSTHKLRSCVEAI 699

Query: 322 HIKD-CNSLPLNLLHLANMEHL 342
            +++  +S+ LN+  LANM+HL
Sbjct: 700 SLENFSSSVSLNISWLANMQHL 721

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.939	0.381	0.382	3.8e-56
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.713	0.288	0.445	1.4e-55
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.710	0.291	0.435	3.5e-54
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.699	0.286	0.435	7.8e-54
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.719	0.292	0.422	1.3e-53
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.749	0.305	0.414	4.6e-53
TAIR|locus:2170892	848	AT5G43730 [Arabidopsis thalian	0.699	0.299	0.437	5.5e-51
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.699	0.282	0.401	1.2e-50
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.713	0.304	0.420	2.6e-50
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.699	0.262	0.408	3.9e-50

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 3.8e-56, P = 3.8e-56
 Identities = 141/369 (38%), Positives = 214/369 (57%)

Query:     1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
             +A +C GLPLAL  +G+ MA K   +EWR AI+++S+ A++F  ME+ +L  LK+SYD+L
Sbjct:   344 VAGKCCGLPLALNVIGETMACKRMVQEWRNAIDVLSSYAAEFPGMEQ-ILPILKYSYDNL 402

Query:    61 PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDS--------IGGWDVLGALVRAC 112
               ++++ C LYC LFPED  + K  LI YW  EG +D           G++++G LVRAC
Sbjct:   403 NKEQVKPCFLYCSLFPEDYRMEKERLIDYWICEGFIDENESRERALSQGYEIIGILVRAC 462

Query:   113 LL-EEG--GDHVKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRIS 168
             LL EE    + VKMHD++R+MALWIA+++ E +E+ +V+ GVGL + PK++ W  V+R+S
Sbjct:   463 LLLEEAINKEQVKMHDVVREMALWIASDLGEHKERCIVQVGVGLREVPKVKNWSSVRRMS 522

Query:   169 LMENEIQSLPQIPTCPRLQTLLLEYNH-IEEITESFFQSLPSLRVLNLSVNHYLTELPVG 227
             LMENEI+ L   P C  L TL L+ N  +  I++ FF+ +P L VL+LS N  L +LP  
Sbjct:   523 LMENEIEILSGSPECLELTTLFLQKNDSLLHISDEFFRCIPMLVVLDLSGNSSLRKLPNQ 582

Query:   228 IXXXXXXXXXXXXXTKVRGLP---QELKAL-VLRMLHC-------GSNHWPIAEEGNVLS 276
             I             T ++ LP   QELK L  LR+ +        G ++     +  +L 
Sbjct:   583 ISKLVSLRYLDLSWTYIKRLPVGLQELKKLRYLRLDYMKRLKSISGISNISSLRKLQLLQ 642

Query:   277 DDAE---SLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNL 333
                    SL++E+  LE L ++ +S++ S  VE  L  P+L    Q L ++        +
Sbjct:   643 SKMSLDMSLVEELQLLEHLEVLNISIKSSLVVEKLLNAPRLVKCLQILVLRGVQEESSGV 702

Query:   334 LHLANMEHL 342
             L L +M++L
Sbjct:   703 LTLPDMDNL 711

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 122/274 (44%), Positives = 179/274 (65%)

Query:     1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
             +A +C GLPLAL  V + M+ K   +EWR AI ++++ A+KF  M+ K+L  LK+SYDSL
Sbjct:   340 VAKKCCGLPLALNVVSETMSCKRTVQEWRHAIYVLNSYAAKFSGMDDKILPLLKYSYDSL 399

Query:    61 PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLD-SIG-------GWDVLGALVRAC 112
               ++++ CLLYC LFPED++IRK +LI YW  E ++D S G       G++++G+LVRA 
Sbjct:   400 KGEDVKMCLLYCALFPEDAKIRKENLIEYWICEEIIDGSEGIDKAENQGYEIIGSLVRAS 459

Query:   113 LLEE-----GGDHVKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKR 166
             LL E     G + V +HD++R+MALWIA+++ ++ E F+VRA VGL +  K+E W  V+R
Sbjct:   460 LLMEEVELDGANIVCLHDVVREMALWIASDLGKQNEAFIVRASVGLREILKVENWNVVRR 519

Query:   167 ISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV 226
             +SLM+N I  L     C  L TLLL+  H+E+I+  FF S+P L VL+LS N+YL+ELP 
Sbjct:   520 MSLMKNNIAHLDGRLDCMELTTLLLQSTHLEKISSEFFNSMPKLAVLDLSGNYYLSELPN 579

Query:   227 GIXXXXXXXXXXXXXTKVRGLPQELKALVLRMLH 260
             GI             T +R LP+ L+ L  +++H
Sbjct:   580 GISELVSLQYLNLSSTGIRHLPKGLQELK-KLIH 612

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 3.5e-54, Sum P(2) = 3.5e-54
 Identities = 119/273 (43%), Positives = 170/273 (62%)

Query:     1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
             ++ +C GLPLAL  +G+ M+ K   +EWR A E++ TSA+ F  ME ++L  LK+SYDSL
Sbjct:   344 VSEKCCGLPLALNVIGETMSFKRTIQEWRHATEVL-TSATDFSGMEDEILPILKYSYDSL 402

Query:    61 PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLL-DSIG-------GWDVLGALVRAC 112
               ++ +SC LYC LFPED EIRK  LI YW  EG + +  G       G+D+LG LVR+ 
Sbjct:   403 NGEDAKSCFLYCSLFPEDFEIRKEMLIEYWICEGFIKEKQGREKAFNQGYDILGTLVRSS 462

Query:   113 LLEEGG---DHVKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRIS 168
             LL EG    D V MHDM+R+MALWI +++ + +E+ +V+AG+GL + P++E W  VKR+S
Sbjct:   463 LLLEGAKDKDVVSMHDMVREMALWIFSDLGKHKERCIVQAGIGLDELPEVENWRAVKRMS 522

Query:   169 LMENEIQSLPQIPTCPRLQTLLLEYNH-IEEITESFFQSLPSLRVLNLSVNHYLTELPVG 227
             LM N  + +   P C  L TL L+ N+ + +I+  FF+ +PSL VL+LS NH L+ELP  
Sbjct:   523 LMNNNFEKILGSPECVELITLFLQNNYKLVDISMEFFRCMPSLAVLDLSENHSLSELPEE 582

Query:   228 IXXXXXXXXXXXXXTKVRGLPQELKALVLRMLH 260
             I             T +  LP  L  L  +++H
Sbjct:   583 ISELVSLQYLDLSGTYIERLPHGLHEL-RKLVH 614

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 7.8e-54, P = 7.8e-54
 Identities = 114/262 (43%), Positives = 171/262 (65%)

Query:     1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
             +A +C GLPLAL  +G+ MA K   +EWR AI+++++SA++F  ME ++L  LK+SYD+L
Sbjct:   342 VAKKCRGLPLALNVIGETMAYKRTVQEWRSAIDVLTSSAAEFSGMEDEILPILKYSYDNL 401

Query:    61 PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLD-SIG-----GWDVLGALVRACLL 114
              +++L+ C  YC LFPED  I K DL+ YW  EG +D + G     G++++G LVR+CLL
Sbjct:   402 KSEQLKLCFQYCALFPEDHNIEKNDLVDYWIGEGFIDRNKGKAENQGYEIIGILVRSCLL 461

Query:   115 -EEGGDHVKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRISLMEN 172
              EE  + VKMHD++R+MALWIA++  +++E F+V+AG+   + P+IE+W+  +R+SLM N
Sbjct:   462 MEENQETVKMHDVVREMALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFN 521

Query:   173 EIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIXXXX 232
              I+S+   P  P+L TLLL  N +  I+ SFF+ +P L VL+LS+N  L  LP  I    
Sbjct:   522 NIESIRDAPESPQLITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECV 581

Query:   233 XXXXXXXXXTKVRGLPQELKAL 254
                      T++R  P  L  L
Sbjct:   582 SLQYLSLSRTRIRIWPAGLVEL 603

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 1.3e-53, P = 1.3e-53
 Identities = 117/277 (42%), Positives = 170/277 (61%)

Query:     1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
             +A +C GLPLAL  +G+ MAGK   +EW  A++++++ A++F  M+  +L  LK+SYD+L
Sbjct:   341 VAGKCRGLPLALNVIGETMAGKRAVQEWHHAVDVLTSYAAEFSGMDDHILLILKYSYDNL 400

Query:    61 PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLD-SIG-------GWDVLGALVRAC 112
              +  +RSC  YC L+PED  I+K  LI YW  EG +D +IG       G+++LG LVRAC
Sbjct:   401 NDKHVRSCFQYCALYPEDYSIKKYRLIDYWICEGFIDGNIGKERAVNQGYEILGTLVRAC 460

Query:   113 LLEEGGDH---VKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRIS 168
             LL E G +   VKMHD++R+MALW  +++ + +E+ +V+AG GL   PK+E+W  V+R+S
Sbjct:   461 LLSEEGKNKLEVKMHDVVREMALWTLSDLGKNKERCIVQAGSGLRKVPKVEDWGAVRRLS 520

Query:   169 LMENEIQSLPQIPTCPRLQTLLLEYNH-IEEITESFFQSLPSLRVLNLSVNHYLTELPVG 227
             LM N I+ +   P CP L TL L+ N  +  I+  FF+ +  L VL+LS NH L  LP  
Sbjct:   521 LMNNGIEEISGSPECPELTTLFLQENKSLVHISGEFFRHMRKLVVLDLSENHQLDGLPEQ 580

Query:   228 IXXXXXXXXXXXXXTKVRGLP---QELKALVLRMLHC 261
             I             T + GLP   Q+LK L+   L C
Sbjct:   581 ISELVALRYLDLSHTNIEGLPACLQDLKTLIHLNLEC 617

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 4.6e-53, P = 4.6e-53
 Identities = 119/287 (41%), Positives = 178/287 (62%)

Query:     1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
             +A +C GLPLAL  +G+AMA K    EW  AI+++++SA  F  ME ++L  LK+SYD+L
Sbjct:   344 VARKCRGLPLALNVIGEAMACKRTVHEWCHAIDVLTSSAIDFSGMEDEILHVLKYSYDNL 403

Query:    61 PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLD-------SIG-GWDVLGALVRAC 112
               + ++SC LYC LFPED  I K  L+ YW SEG ++       +I  G++++G LVRAC
Sbjct:   404 NGELMKSCFLYCSLFPEDYLIDKEGLVDYWISEGFINEKEGRERNINQGYEIIGTLVRAC 463

Query:   113 LL---EEGGDHVKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRIS 168
             LL   E    +VKMHD++R+MALWI++++ +++EK +VRAGVGL + PK+++W  V++IS
Sbjct:   464 LLLEEERNKSNVKMHDVVREMALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRKIS 523

Query:   169 LMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI 228
             LM NEI+ +     C  L TL L+ N + +I+  FF+ +P L VL+LS N  L ELP  I
Sbjct:   524 LMNNEIEEIFDSHECAALTTLFLQKNDVVKISAEFFRCMPHLVVLDLSENQSLNELPEEI 583

Query:   229 XXXXXXXXXXXXXTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVL 275
                          T +  LP  L  L  +++H    H  ++  G++L
Sbjct:   584 SELASLRYFNLSYTCIHQLPVGLWTLK-KLIHLNLEH--MSSLGSIL 627

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2170892 AT5G43730 [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 5.5e-51, P = 5.5e-51
 Identities = 116/265 (43%), Positives = 160/265 (60%)

Query:     1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
             +A++CHGLPLAL  +G+AM  KE  +EWR AI ++++   KF  ME+++L  LKFSYDSL
Sbjct:   339 VAAKCHGLPLALNVIGKAMVCKETVQEWRHAINVLNSPGHKFPGMEERILPILKFSYDSL 398

Query:    61 PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLD----SIGG----WDVLGALVRAC 112
              N E++ C LYC LFPED EI K  LI YW  EG ++      GG    +D++G LVRA 
Sbjct:   399 KNGEIKLCFLYCSLFPEDFEIEKDKLIEYWICEGYINPNRYEDGGTNQGYDIIGLLVRAH 458

Query:   113 LLEEGG--DHVKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRISL 169
             LL E    D VKMHD+IR+MALWI ++   ++E   V++G  +   P    WE V+++SL
Sbjct:   459 LLIECELTDKVKMHDVIREMALWINSDFGNQQETICVKSGAHVRLIPNDISWEIVRQMSL 518

Query:   170 MENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIX 229
             +  +++ +   P CP L TLLL YN + +I+  FF  +P L VL+LS N  L ELP  I 
Sbjct:   519 ISTQVEKIACSPNCPNLSTLLLPYNKLVDISVGFFLFMPKLVVLDLSTNWSLIELPEEIS 578

Query:   230 XXXXXXXXXXXXTKVRGLPQELKAL 254
                         T ++ LP  LK L
Sbjct:   579 NLGSLQYLNLSLTGIKSLPVGLKKL 603

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 1.2e-50, Sum P(2) = 1.2e-50
 Identities = 106/264 (40%), Positives = 161/264 (60%)

Query:     1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
             +A +C GLPLAL  +G+ M+ K   +EW  AI + +TSA++F DM+ K+L  LK+SYDSL
Sbjct:   340 VAQKCRGLPLALNVIGETMSSKTMVQEWEHAIHVFNTSAAEFSDMQNKILPILKYSYDSL 399

Query:    61 PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLL--DSI------GGWDVLGALVRAC 112
              ++ ++SC LYC LFPED EI    LI YW  EG +  D +       G+ +LG L RA 
Sbjct:   400 GDEHIKSCFLYCALFPEDGEIYNEKLIDYWICEGFIGEDQVIKRARNKGYAMLGTLTRAN 459

Query:   113 LLEEGGDHV-KMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRISLM 170
             LL + G +   MHD++R+MALWIA++  +++E F+V+AGVGL + PK+++W  V+++SLM
Sbjct:   460 LLTKVGTYYCVMHDVVREMALWIASDFGKQKENFVVQAGVGLHEIPKVKDWGAVRKMSLM 519

Query:   171 ENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIXX 230
             +N+I+ +     C  L TL L+ N ++ +  +F + +  L VL+LS N    +LP  I  
Sbjct:   520 DNDIEEITCESKCSELTTLFLQSNKLKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISG 579

Query:   231 XXXXXXXXXXXTKVRGLPQELKAL 254
                        T +  +P  LK L
Sbjct:   580 LVSLQFLDLSNTSIEHMPIGLKEL 603

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 2.6e-50, P = 2.6e-50
 Identities = 114/271 (42%), Positives = 167/271 (61%)

Query:     1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
             +A +C GLPLAL  +G+AMA +E  +EW+  I ++++S+ +F  ME+K+L  LKFSYD L
Sbjct:   341 VAEKCCGLPLALSVIGKAMASRETVQEWQHVIHVLNSSSHEFPSMEEKILPVLKFSYDDL 400

Query:    61 PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSI----G----GWDVLGALVRAC 112
              +++++ C LYC LFPED E+RK +LI YW  EG +D      G    G D++G+LVRA 
Sbjct:   401 KDEKVKLCFLYCSLFPEDYEVRKEELIEYWMCEGFIDGNEDEDGANNKGHDIIGSLVRAH 460

Query:   113 LLEEGG--DHVKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRISL 169
             LL +G     VKMHD+IR+MALWIA+   +++E   V+ GV L   PK   WE ++R+SL
Sbjct:   461 LLMDGELTTKVKMHDVIREMALWIASNFGKQKETLCVKPGVQLCHIPKDINWESLRRMSL 520

Query:   170 MENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIX 229
             M N+I ++      P L TLLL+ N +  I+  FF+ +P+L VL+LS N  L+ LP  I 
Sbjct:   521 MCNQIANISSSSNSPNLSTLLLQNNKLVHISCDFFRFMPALVVLDLSRNSSLSSLPEAIS 580

Query:   230 XXXXXXXXXXXXTKVRGLPQELKALVLRMLH 260
                         T ++ LP   K L  +++H
Sbjct:   581 KLGSLQYINLSTTGIKWLPVSFKELK-KLIH 610

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 3.9e-50, Sum P(2) = 3.9e-50
 Identities = 109/267 (40%), Positives = 163/267 (61%)

Query:     1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
             +A +C GLPLAL  +G+ MA K   +EW  AI++++ SA++F DM+ K+L  LK+SYDSL
Sbjct:   341 VAQKCRGLPLALSCIGETMASKTMVQEWEHAIDVLTRSAAEFSDMQNKILPILKYSYDSL 400

Query:    61 PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLL--DSI------GGWDVLGALVRAC 112
              ++ ++SC LYC LFPED +I    LI  W  EG +  D +       G+++LG L+RA 
Sbjct:   401 EDEHIKSCFLYCALFPEDDKIDTKTLINKWICEGFIGEDQVIKRARNKGYEMLGTLIRAN 460

Query:   113 LL-EEGGD---HVKMHDMIRDMALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRI 167
             LL  + G    HV MHD++R+MALWIA++  +++E ++VRA VGL + PK+++W  V+R+
Sbjct:   461 LLTNDRGFVKWHVVMHDVVREMALWIASDFGKQKENYVVRARVGLHEIPKVKDWGAVRRM 520

Query:   168 SLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG 227
             SLM NEI+ +     C  L TL L+ N ++ ++  F + +  L VL+LS N    ELP  
Sbjct:   521 SLMMNEIEEITCESKCSELTTLFLQSNQLKNLSGEFIRYMQKLVVLDLSHNPDFNELPEQ 580

Query:   228 IXXXXXXXXXXXXXTKVRGLPQELKAL 254
             I             T++  LP  LK L
Sbjct:   581 ISGLVSLQYLDLSWTRIEQLPVGLKEL 607

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037624001 SubName- Full=Chromosome chr9 scaffold_90, whole genome shotgun sequence; (894 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	363
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	9e-23
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.004

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 96.2 bits (240), Expect = 9e-23
 Identities = 40/96 (41%), Positives = 55/96 (57%), Gaps = 2/96 (2%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
           +  +C GLPLAL+ +G  +A K   +EW   +E ++   +   D   +VLS L  SYD+L
Sbjct: 187 IVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNNELAGR-DGLNEVLSILSLSYDNL 245

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLL 96
           P   L+ C LY  LFPED  IRK  LI  W +EG +
Sbjct: 246 P-MHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFV 280

Length = 285

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 185 RLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTK 243
            L++L L  N +  I +  F+ LP+L+VL+LS N+ LT + P   S L SL  LDLS   
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNN-LTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 163 GVKRISLMENEIQSLPQIP--TCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH 219
            +K + L  N +  +P       P L+ L L  N++  I+   F  LPSLR L+LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 184 PRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV 226
             L+TL L  N I ++      +LP+L  L+LS N  +T+L  
Sbjct: 1   TNLETLDLSNNQITDL--PPLSNLPNLETLDLSGNK-ITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 14/121 (11%)

Query: 184 PRLQTLLLEYNHIE-EITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSST 242
           P +QT+ L  N +   I +  F +  SLR LNLS N++   +P G  S+ +L  LDLS+ 
Sbjct: 93  PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNN 150

Query: 243 KVRG-LPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLR 300
            + G +P ++ +   L++L  G         GNVL     + +  +  LE L L +  L 
Sbjct: 151 MLSGEIPNDIGSFSSLKVLDLG---------GNVLVGKIPNSLTNLTSLEFLTLASNQLV 201

Query: 301 G 301
           G
Sbjct: 202 G 202

Length = 968

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 208 PSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLP 248
            +L  L+LS N  +T+LP  +S+L +L  LDLS  K+  L 
Sbjct: 1   TNLETLDLSNNQ-ITDLP-PLSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	363
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.74
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.7
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.64
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.63
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.62
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.56
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.5
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.49
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.49
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.41
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.4
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.39
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.36
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.28
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.2
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.1
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.03
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.94
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.9
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.86
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.85
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.8
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.68
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.66
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.57
PLN03150	623	hypothetical protein; Provisional	98.54
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.52
PLN03150	623	hypothetical protein; Provisional	98.49
PRK15386	426	type III secretion protein GogB; Provisional	98.47
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.4
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.39
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.38
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.31
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.17
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.08
PRK15386	426	type III secretion protein GogB; Provisional	97.98
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.95
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.93
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.8
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.73
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.68
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.51
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.4
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.27
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.9
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.88
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.81
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.62
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.46
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.42
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.35
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.29
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.17
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.99
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.27
smart00370	26	LRR Leucine-rich repeats, outliers.	94.74
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.74
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.73
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.47
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.27
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.48
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.97
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.54
smart00370	26	LRR Leucine-rich repeats, outliers.	91.54
PRK04841	903	transcriptional regulator MalT; Provisional	91.5
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.09
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	87.9
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	87.79
KOG4341	483	consensus F-box protein containing LRR [General fu	81.29

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-53  Score=424.62  Aligned_cols=356  Identities=41%  Similarity=0.720  Sum_probs=300.8

Q ss_pred             CccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhcc-ccccccchHHHHHHHHhhcCCCCChhhhHHHhHhcCCCCCc
Q 017975            1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTS-ASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDS   79 (363)
Q Consensus         1 Iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~-~~~~~~~~~~i~~~L~~sy~~L~~~~lk~cfl~~s~Fp~~~   79 (363)
                      ||++|+|+|||++|+|+.|+.|++..+|+++.+.+.+. ..+++++.+.|+++|++|||.||+ ++|.||+|||+||+||
T Consensus       348 v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~  426 (889)
T KOG4658|consen  348 VAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDY  426 (889)
T ss_pred             HHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCccc
Confidence            58999999999999999999999999999999999887 666667778999999999999996 9999999999999999


Q ss_pred             ccChHHHHHHHHHhCCccCcC--------HHHHHHHHHHhhcccCCC-----CceeechhHHHHHHHHhhhh-cccceeE
Q 017975           80 EIRKTDLIVYWESEGLLDSIG--------GWDVLGALVRACLLEEGG-----DHVKMHDMIRDMALWIANEI-EEEEKFL  145 (363)
Q Consensus        80 ~~~~~~li~~w~a~g~~~~~~--------~~~~~~~L~~rsli~~~~-----~~~~mhdl~~~~~~~i~~~~-~~~~~~~  145 (363)
                      .|++++||..|+||||+....        |+.|+++|+++++++.+.     .+|+|||+|+|||.+++.+. ..+++.+
T Consensus       427 ~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~i  506 (889)
T KOG4658|consen  427 EIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQI  506 (889)
T ss_pred             ccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceE
Confidence            999999999999999998732        999999999999999844     89999999999999999866 4455677


Q ss_pred             EecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCC--ccccchHHhcCCCCCCEEEcccCCCccc
Q 017975          146 VRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNH--IEEITESFFQSLPSLRVLNLSVNHYLTE  223 (363)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~--l~~~~~~~~~~l~~L~~L~L~~~~~~~~  223 (363)
                      +..+.+....|....+..+|++++.+|.+..++.-...++|++|-+.+|.  +..++..+|..++.|++|||++|..+.+
T Consensus       507 v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~  586 (889)
T KOG4658|consen  507 VSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK  586 (889)
T ss_pred             EECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence            77766777788888999999999999999999888888899999999996  7888888899999999999999999999


Q ss_pred             cCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCc-cCcCCC-----CCCCCC--------Ccccchhhhcc
Q 017975          224 LPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNH-WPIAEE-----GNVLSD--------DAESLMKEIHC  288 (363)
Q Consensus       224 lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~-l~~lp~-----~~l~~l--------~~~~~l~~l~~  288 (363)
                      +|++|++|.+||||+++++.++.+|.++.+|+ |.+|++..+. +..+|.     .+|..+        .....++++.+
T Consensus       587 LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~  666 (889)
T KOG4658|consen  587 LPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELEN  666 (889)
T ss_pred             CChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhc
Confidence            99999999999999999999999999999999 9998888654 333333     233332        12234566777


Q ss_pred             ccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975          289 LEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD  358 (363)
Q Consensus       289 L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~  358 (363)
                      |++|....+...+......+..++.+....+.+.+.+| ..+..+.++..+.+|+.|.+.+|...+...+
T Consensus       667 Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~-~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~  735 (889)
T KOG4658|consen  667 LEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC-SKRTLISSLGSLGNLEELSILDCGISEIVIE  735 (889)
T ss_pred             ccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc-ccceeecccccccCcceEEEEcCCCchhhcc
Confidence            77777777765554333456677777777777777553 3455577899999999999999999765443

>PLN03210 Resistant to P

Probab=100.00  E-value=2.7e-38  Score=329.73  Aligned_cols=256  Identities=23%  Similarity=0.317  Sum_probs=194.7

Q ss_pred             CccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccccccccchHHHHHHHHhhcCCCCChhhhHHHhHhcCCCCCcc
Q 017975            1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSE   80 (363)
Q Consensus         1 Iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~lk~cfl~~s~Fp~~~~   80 (363)
                      ||++|+|+||||+++|++|++ ++.++|+++++++++.+.      ++|.++|++||++|+++..|.||+||||||.++.
T Consensus       381 iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~~------~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~  453 (1153)
T PLN03210        381 VALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGLD------GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEK  453 (1153)
T ss_pred             HHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCcc------HHHHHHHHHhhhccCccchhhhhheehhhcCCCC
Confidence            589999999999999999999 688999999999987554      3899999999999987359999999999999875


Q ss_pred             cChHHHHHHHHHhCCccCcCHHHHHHHHHHhhcccCCCCceeechhHHHHHHHHhhhhc---ccceeEEecC--------
Q 017975           81 IRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGGDHVKMHDMIRDMALWIANEIE---EEEKFLVRAG--------  149 (363)
Q Consensus        81 ~~~~~li~~w~a~g~~~~~~~~~~~~~L~~rsli~~~~~~~~mhdl~~~~~~~i~~~~~---~~~~~~~~~~--------  149 (363)
                      ++   .+..|.|.+....   ..-++.|+++|||++..+.++|||++|+||+++++++.   .++.+++...        
T Consensus       454 ~~---~v~~~l~~~~~~~---~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~  527 (1153)
T PLN03210        454 VN---DIKLLLANSDLDV---NIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLED  527 (1153)
T ss_pred             HH---HHHHHHHhcCCCc---hhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHh
Confidence            43   3566777765543   22399999999999988899999999999999987652   2222222110        


Q ss_pred             -C-------------CCC---------------------------------CCc-cccc-cccceEEEeecccccccCCC
Q 017975          150 -V-------------GLT---------------------------------DAP-KIEE-WEGVKRISLMENEIQSLPQI  180 (363)
Q Consensus       150 -~-------------~~~---------------------------------~~~-~~~~-~~~l~~L~l~~~~~~~l~~~  180 (363)
                       .             ...                                 .+| .+.. ..++|.|.+.++.++.+|..
T Consensus       528 ~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~  607 (1153)
T PLN03210        528 NTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN  607 (1153)
T ss_pred             CcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc
Confidence             0             000                                 000 0111 13466777777777777766


Q ss_pred             CCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCC-CCCccchhhhccc-hhc
Q 017975          181 PTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSST-KVRGLPQELKALV-LRM  258 (363)
Q Consensus       181 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~-~l~~lP~~i~~L~-L~~  258 (363)
                      ..+.+|+.|++.+|.+..++.+ +..+++|++|+|+++..++.+| .++.+++|++|++++| .+..+|.+++.++ |+.
T Consensus       608 f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~  685 (1153)
T PLN03210        608 FRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLED  685 (1153)
T ss_pred             CCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence            6778888999988888888776 6788888999988887778887 5888888888888887 6777888888887 777


Q ss_pred             cccC-cCccCcCCC
Q 017975          259 LHCG-SNHWPIAEE  271 (363)
Q Consensus       259 L~~~-~~~l~~lp~  271 (363)
                      |+++ |+.++.+|.
T Consensus       686 L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        686 LDMSRCENLEILPT  699 (1153)
T ss_pred             EeCCCCCCcCccCC
Confidence            7765 456777775

syringae 6; Provisional

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.74  E-value=3.5e-19  Score=160.10  Aligned_cols=98  Identities=40%  Similarity=0.775  Sum_probs=83.9

Q ss_pred             CccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccccccccchHHHHHHHHhhcCCCCChhhhHHHhHhcCCCCCcc
Q 017975            1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSE   80 (363)
Q Consensus         1 Iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~lk~cfl~~s~Fp~~~~   80 (363)
                      |+++|+|+||||+++|++|+.+.+..+|+++++.+........+....+..++.+||+.||+ ++|.||+|||+||+++.
T Consensus       188 i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~f~~L~~f~~~~~  266 (287)
T PF00931_consen  188 IVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD-ELRRCFLYLSIFPEGVP  266 (287)
T ss_dssp             HHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT-CCHHHHHHGGGSGTTS-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCc-cHHHHHhhCcCCCCCce
Confidence            57899999999999999997766789999999988877654444455899999999999999 89999999999999999


Q ss_pred             cChHHHHHHHHHhCCccCc
Q 017975           81 IRKTDLIVYWESEGLLDSI   99 (363)
Q Consensus        81 ~~~~~li~~w~a~g~~~~~   99 (363)
                      |+++.++++|+|+||+.+.
T Consensus       267 i~~~~li~lW~~e~~i~~~  285 (287)
T PF00931_consen  267 IPRERLIRLWVAEGFISSK  285 (287)
T ss_dssp             EEHHHHHHHHTT-HHTC--
T ss_pred             ECHHHHHHHHHHCCCCccc
Confidence            9999999999999999865

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.70  E-value=6.1e-17  Score=168.88  Aligned_cols=191  Identities=21%  Similarity=0.292  Sum_probs=83.9

Q ss_pred             ccceEEEeecccccc-cC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 017975          162 EGVKRISLMENEIQS-LP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDL  239 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~-l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l  239 (363)
                      +++++|++++|.+.. +| .+..+++|++|++++|.+....+..++++++|++|++++|.....+|..++++++|++|++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            344444444444331 22 2344455555555555444333323445555555555555333344555555555555555


Q ss_pred             cCCCCC-ccchhhhccc-hhccccCcCccC-cCCC--CCCCCC------------CcccchhhhccccccceEEEEeccC
Q 017975          240 SSTKVR-GLPQELKALV-LRMLHCGSNHWP-IAEE--GNVLSD------------DAESLMKEIHCLEQLNLIALSLRGS  302 (363)
Q Consensus       240 ~~~~l~-~lP~~i~~L~-L~~L~~~~~~l~-~lp~--~~l~~l------------~~~~~l~~l~~L~~L~l~~~~~~~~  302 (363)
                      ++|.+. .+|..++.++ |+.|+++.|.+. .+|.  +++..+            ..|..+..+++|+.|++.+|.+.+.
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  299 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE  299 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence            555444 2444555554 555555444443 2222  111111            2334444455555555555544433


Q ss_pred             cccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccc
Q 017975          303 RGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNV  357 (363)
Q Consensus       303 ~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~  357 (363)
                      .+ ..+..++++    +.|++++|......+..+..+++|+.|++++|...+.+|
T Consensus       300 ~p-~~~~~l~~L----~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  349 (968)
T PLN00113        300 IP-ELVIQLQNL----EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP  349 (968)
T ss_pred             CC-hhHcCCCCC----cEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence            22 223333333    455555444322333344445555555555555444444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.70  E-value=5.7e-17  Score=169.09  Aligned_cols=195  Identities=22%  Similarity=0.283  Sum_probs=138.9

Q ss_pred             ccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 017975          160 EWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDL  239 (363)
Q Consensus       160 ~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l  239 (363)
                      .++++++|++++|.+........+++|++|++++|.+....+..++++++|++|++++|.....+|..++++++|++|++
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  195 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL  195 (968)
T ss_pred             cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence            56778888888877765433456788888888888887554545888889999999888656678888888999999999


Q ss_pred             cCCCCCc-cchhhhccc-hhccccCcCccC-cCCC--CCCCCC------------CcccchhhhccccccceEEEEeccC
Q 017975          240 SSTKVRG-LPQELKALV-LRMLHCGSNHWP-IAEE--GNVLSD------------DAESLMKEIHCLEQLNLIALSLRGS  302 (363)
Q Consensus       240 ~~~~l~~-lP~~i~~L~-L~~L~~~~~~l~-~lp~--~~l~~l------------~~~~~l~~l~~L~~L~l~~~~~~~~  302 (363)
                      ++|.+.. +|..+++++ |+.|+++.|.+. .+|.  +++.++            ..|..++++++|+.|++.+|.+.+.
T Consensus       196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  275 (968)
T PLN00113        196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP  275 (968)
T ss_pred             cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence            8887764 788888888 888888888776 3443  222222            3555666777777777777766655


Q ss_pred             cccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975          303 RGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       303 ~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  359 (363)
                      .+ ..+..++++    +.|++++|......+..+.++++|+.|++++|...+..|..
T Consensus       276 ~p-~~l~~l~~L----~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~  327 (968)
T PLN00113        276 IP-PSIFSLQKL----ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA  327 (968)
T ss_pred             Cc-hhHhhccCc----CEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence            44 345555555    77788777654444556777788888888888777666653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=4.9e-19  Score=139.17  Aligned_cols=159  Identities=30%  Similarity=0.463  Sum_probs=127.3

Q ss_pred             CCCCCccccccccceEEEeecccccccC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcccc
Q 017975          151 GLTDAPKIEEWEGVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIS  229 (363)
Q Consensus       151 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~  229 (363)
                      .+.+++.+..++++.+|.+++|.++.+| .+.++.+|++|++.+|+++++|.+ ++.+++||.|+++-| .+..+|.++|
T Consensus        22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfg   99 (264)
T KOG0617|consen   22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFG   99 (264)
T ss_pred             cHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccC
Confidence            3445666777788899999999988875 578899999999999999999888 899999999999988 7888999999


Q ss_pred             CCCCCCEEEccCCCCCc--cchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccc
Q 017975          230 SLVSLHHLDLSSTKVRG--LPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVE  306 (363)
Q Consensus       230 ~L~~L~~L~l~~~~l~~--lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  306 (363)
                      .++.|+.||+++|++.+  +|..+..++ |+.|+++.|.++.+|          ..++++++|+.|.+.+|.+.+..  .
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp----------~dvg~lt~lqil~lrdndll~lp--k  167 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILP----------PDVGKLTNLQILSLRDNDLLSLP--K  167 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCC----------hhhhhhcceeEEeeccCchhhCc--H
Confidence            99999999999998875  898888888 999999999988888          56777777777777666654332  3


Q ss_pred             cccCCCchhhhhheeeecccC
Q 017975          307 NFLKFPKLQNITQALHIKDCN  327 (363)
Q Consensus       307 ~l~~l~~l~~~L~~L~l~~~~  327 (363)
                      .++.+..+    +.|++.++.
T Consensus       168 eig~lt~l----relhiqgnr  184 (264)
T KOG0617|consen  168 EIGDLTRL----RELHIQGNR  184 (264)
T ss_pred             HHHHHHHH----HHHhcccce
Confidence            44555555    666666654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=9.8e-19  Score=137.49  Aligned_cols=171  Identities=23%  Similarity=0.281  Sum_probs=149.5

Q ss_pred             cccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhh
Q 017975          173 EIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELK  252 (363)
Q Consensus       173 ~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~  252 (363)
                      ++.++|.+.++.+...|.+++|.++.+||. +..+.+|++|++++| .++++|.+|+.++.|+.|+++-|.+..+|.+++
T Consensus        22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfg   99 (264)
T KOG0617|consen   22 SFEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFG   99 (264)
T ss_pred             cHhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence            455678888999999999999999999999 899999999999999 899999999999999999999999999999999


Q ss_pred             ccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCc
Q 017975          253 ALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPL  331 (363)
Q Consensus       253 ~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~  331 (363)
                      .+. |+.|++..|.+.+-        ..|..+..++.|+.|++.+|.+.-. | +.++.++++    |.|.+.++..+. 
T Consensus       100 s~p~levldltynnl~e~--------~lpgnff~m~tlralyl~dndfe~l-p-~dvg~lt~l----qil~lrdndll~-  164 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNEN--------SLPGNFFYMTTLRALYLGDNDFEIL-P-PDVGKLTNL----QILSLRDNDLLS-  164 (264)
T ss_pred             CCchhhhhhccccccccc--------cCCcchhHHHHHHHHHhcCCCcccC-C-hhhhhhcce----eEEeeccCchhh-
Confidence            999 99999999887542        2447888899999999999988533 3 567888888    999999976543 


Q ss_pred             CCcccccccccceeeeccCCCCCcccccc
Q 017975          332 NLLHLANMEHLQLFSIWDSNLEDWNVDCA  360 (363)
Q Consensus       332 ~~~~l~~l~~L~~L~l~~c~~l~~~~~~~  360 (363)
                      .|..++.++.|+.|+++||+..-.+|+.+
T Consensus       165 lpkeig~lt~lrelhiqgnrl~vlppel~  193 (264)
T KOG0617|consen  165 LPKEIGDLTRLRELHIQGNRLTVLPPELA  193 (264)
T ss_pred             CcHHHHHHHHHHHHhcccceeeecChhhh
Confidence            36789999999999999999888777754

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.64  E-value=9.3e-18  Score=148.19  Aligned_cols=111  Identities=35%  Similarity=0.505  Sum_probs=97.6

Q ss_pred             ccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCC
Q 017975          156 PKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLH  235 (363)
Q Consensus       156 ~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~  235 (363)
                      ++++.++++..|++..|.+..+|+|..+..|..|.+..|.++.+|....+++.++.+|||..| .++++|..++.+.+|.
T Consensus       200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~  278 (565)
T KOG0472|consen  200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLE  278 (565)
T ss_pred             hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhh
Confidence            467778888889999999999999999999999999999999999887889999999999999 8999999999999999


Q ss_pred             EEEccCCCCCccchhhhccchhccccCcCccC
Q 017975          236 HLDLSSTKVRGLPQELKALVLRMLHCGSNHWP  267 (363)
Q Consensus       236 ~L~l~~~~l~~lP~~i~~L~L~~L~~~~~~l~  267 (363)
                      +||+++|.|+.+|.++++++|+.|.+.+|.++
T Consensus       279 rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlr  310 (565)
T KOG0472|consen  279 RLDLSNNDISSLPYSLGNLHLKFLALEGNPLR  310 (565)
T ss_pred             hhcccCCccccCCcccccceeeehhhcCCchH
Confidence            99999999999999999988666666555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.63  E-value=5.9e-17  Score=150.51  Aligned_cols=202  Identities=23%  Similarity=0.248  Sum_probs=128.0

Q ss_pred             ccccccccceEEEeecccccccCC-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCC
Q 017975          156 PKIEEWEGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSL  234 (363)
Q Consensus       156 ~~~~~~~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L  234 (363)
                      +++..+..+..|++++|++++.|. +...+++-+|++++|++..+|...|-++.-|-+||||+| .+..+|+.+..|.+|
T Consensus        97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~L  175 (1255)
T KOG0444|consen   97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSML  175 (1255)
T ss_pred             chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhh
Confidence            456677778888888888877773 566677777777777777777777777777777777777 677777777766666


Q ss_pred             CEEEccCCCC--------------------------Cccchhhhccc-hhccccCcCccCcCCC-----CCCCCC-----
Q 017975          235 HHLDLSSTKV--------------------------RGLPQELKALV-LRMLHCGSNHWPIAEE-----GNVLSD-----  277 (363)
Q Consensus       235 ~~L~l~~~~l--------------------------~~lP~~i~~L~-L~~L~~~~~~l~~lp~-----~~l~~l-----  277 (363)
                      ++|+|++|.+                          ..+|.++..|. |..+++++|.+..+|.     .++..+     
T Consensus       176 qtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N  255 (1255)
T KOG0444|consen  176 QTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN  255 (1255)
T ss_pred             hhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC
Confidence            6666666542                          12555555555 6666777777776665     222111     


Q ss_pred             --------------------------CcccchhhhccccccceEEEEeccCcccccccCCCchh----------------
Q 017975          278 --------------------------DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQ----------------  315 (363)
Q Consensus       278 --------------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~----------------  315 (363)
                                                ..|+.+..+++|+.|..-+|.+.-..-+..++.+.++.                
T Consensus       256 ~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEgl  335 (1255)
T KOG0444|consen  256 KITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGL  335 (1255)
T ss_pred             ceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhh
Confidence                                      34444444555555544444433221122333333220                


Q ss_pred             -h--hhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975          316 -N--ITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       316 -~--~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  359 (363)
                       +  .|+.|.++.|. +-..|..+.-|+-|+.|++.+|+.+-.+|+-
T Consensus       336 cRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPPKP  381 (1255)
T KOG0444|consen  336 CRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPPKP  381 (1255)
T ss_pred             hhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCCCc
Confidence             0  12666766544 4445778888999999999999999888764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.62  E-value=3.8e-17  Score=151.73  Aligned_cols=127  Identities=23%  Similarity=0.400  Sum_probs=82.4

Q ss_pred             eeEEecCCCCCCCc-cccccccceEEEeecccccccC-CCCCCCCccEEEeccCCcc--ccchHHhcCCCCCCEEEcccC
Q 017975          143 KFLVRAGVGLTDAP-KIEEWEGVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNHIE--EITESFFQSLPSLRVLNLSVN  218 (363)
Q Consensus       143 ~~~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~  218 (363)
                      .++..+..++..+| .+..+.++.+|++.+|++..+. +++.++.||.+++..|++.  ++|++ +-.+.-|.+||||+|
T Consensus        35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN  113 (1255)
T KOG0444|consen   35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN  113 (1255)
T ss_pred             eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchh
Confidence            34555555555555 3556667777777777766543 4666677777777766553  46666 556677777777777


Q ss_pred             CCccccCccccCCCCCCEEEccCCCCCccchhh-hccc-hhccccCcCccCcCCC
Q 017975          219 HYLTELPVGISSLVSLHHLDLSSTKVRGLPQEL-KALV-LRMLHCGSNHWPIAEE  271 (363)
Q Consensus       219 ~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i-~~L~-L~~L~~~~~~l~~lp~  271 (363)
                       .+++.|..+....++-.|+||+|+|..+|.++ -+|+ |-.|++++|+++.+|+
T Consensus       114 -qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP  167 (1255)
T KOG0444|consen  114 -QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP  167 (1255)
T ss_pred             -hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH
Confidence             66667777776677777777777777776553 4555 6666677777776665

>PLN03210 Resistant to P

Probab=99.56  E-value=2.5e-14  Score=150.49  Aligned_cols=207  Identities=21%  Similarity=0.211  Sum_probs=132.4

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccC-CCCCCCCccEEEeccCC-ccccchHHhcCCCCCCEEEcccCCC
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNH-IEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      +++.+.+..+..+|....+.+++.|++.++.++.++ .+..+++|+.|+++++. +..+|.  ++.+++|+.|++++|..
T Consensus       592 r~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~  669 (1153)
T PLN03210        592 RLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSS  669 (1153)
T ss_pred             EEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCC
Confidence            455666666777776666788999999999888876 46778889999998774 555553  77888899999988888


Q ss_pred             ccccCccccCCCCCCEEEccCC-CCCccchhhhccc-hhccccCc-CccCcCCC--CCCCCC--------Ccccch----
Q 017975          221 LTELPVGISSLVSLHHLDLSST-KVRGLPQELKALV-LRMLHCGS-NHWPIAEE--GNVLSD--------DAESLM----  283 (363)
Q Consensus       221 ~~~lp~~i~~L~~L~~L~l~~~-~l~~lP~~i~~L~-L~~L~~~~-~~l~~lp~--~~l~~l--------~~~~~l----  283 (363)
                      +..+|.+++.+++|++|++++| .+..+|..+ +++ |+.|++++ ..+..+|.  .++..+        ..|..+    
T Consensus       670 L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~  748 (1153)
T PLN03210        670 LVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLEN  748 (1153)
T ss_pred             ccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccc
Confidence            8888888888889999999887 677788765 444 55544433 23444442  222221        111111    


Q ss_pred             --------------------------hhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccc
Q 017975          284 --------------------------KEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLA  337 (363)
Q Consensus       284 --------------------------~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~  337 (363)
                                                ...++|+.|++.+|......| ..++++++|    +.|++++|..+...|..+ 
T Consensus       749 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-~si~~L~~L----~~L~Ls~C~~L~~LP~~~-  822 (1153)
T PLN03210        749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-SSIQNLHKL----EHLEIENCINLETLPTGI-  822 (1153)
T ss_pred             cccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC-hhhhCCCCC----CEEECCCCCCcCeeCCCC-
Confidence                                      112345555555544333333 334555554    777777776544433333 


Q ss_pred             cccccceeeeccCCCCCcccc
Q 017975          338 NMEHLQLFSIWDSNLEDWNVD  358 (363)
Q Consensus       338 ~l~~L~~L~l~~c~~l~~~~~  358 (363)
                      ++++|+.|++++|..++.+|+
T Consensus       823 ~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        823 NLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             CccccCEEECCCCCccccccc
Confidence            567777777777776666554

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.50  E-value=4e-15  Score=137.36  Aligned_cols=207  Identities=22%  Similarity=0.280  Sum_probs=124.8

Q ss_pred             cCCCCCCCc--cccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccc
Q 017975          148 AGVGLTDAP--KIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE  223 (363)
Q Consensus       148 ~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~  223 (363)
                      ..+.++.+|  .++.+++++.|++..|.++...  .|..++.|+.|.+..|.+..+.++.|-.+.++++|+|+.| .++.
T Consensus       205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~  283 (873)
T KOG4194|consen  205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQA  283 (873)
T ss_pred             ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhh
Confidence            444455544  3455777888888777766542  3555666666666666666655555555566666666555 3333


Q ss_pred             c-CccccCCCCCCEEEccCCCCCcc-chhhhccc-hhccccCcCccCcCCCCC------CCCC---------Ccccchhh
Q 017975          224 L-PVGISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWPIAEEGN------VLSD---------DAESLMKE  285 (363)
Q Consensus       224 l-p~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~-L~~L~~~~~~l~~lp~~~------l~~l---------~~~~~l~~  285 (363)
                      + -.++.+|+.|+.|++++|.|..+ ++++.--+ |..|+++.|++++++++.      +..+         --.-.+..
T Consensus       284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~  363 (873)
T KOG4194|consen  284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG  363 (873)
T ss_pred             hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence            2 23445555555555555555554 33333333 555555555555555411      1111         01134677


Q ss_pred             hccccccceEEEEeccCcc--cccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975          286 IHCLEQLNLIALSLRGSRG--VENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       286 l~~L~~L~l~~~~~~~~~~--~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  359 (363)
                      +++|++|++..|.++..+.  ...+.+++.|    +.|.+.+|+.....-..+..+++|+.|++.+|.+...-|++
T Consensus       364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L----rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nA  435 (873)
T KOG4194|consen  364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSL----RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNA  435 (873)
T ss_pred             hhhhhhhcCcCCeEEEEEecchhhhccchhh----hheeecCceeeecchhhhccCcccceecCCCCcceeecccc
Confidence            8899999998888765543  2234455555    88999998865555567889999999999999887666654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.49  E-value=1.1e-14  Score=134.39  Aligned_cols=209  Identities=22%  Similarity=0.265  Sum_probs=136.6

Q ss_pred             eEEecCCCCCCCccccccc-cceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975          144 FLVRAGVGLTDAPKIEEWE-GVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~-~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      .+....+.++.+|.+.... +++.|++.+|.|.++.  .+..++.||+|||+.|.++.++...|..-.++++|+|++| .
T Consensus       106 ~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~  184 (873)
T KOG4194|consen  106 EVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-R  184 (873)
T ss_pred             eeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-c
Confidence            3444555666666655444 3777888777777664  3566777788888888777777666666677888888887 4


Q ss_pred             cccc-CccccCCCCCCEEEccCCCCCccchhh-hccc-hhccccCcCccCcCCC---C---CCCCC---------Ccccc
Q 017975          221 LTEL-PVGISSLVSLHHLDLSSTKVRGLPQEL-KALV-LRMLHCGSNHWPIAEE---G---NVLSD---------DAESL  282 (363)
Q Consensus       221 ~~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i-~~L~-L~~L~~~~~~l~~lp~---~---~l~~l---------~~~~~  282 (363)
                      ++.+ -..|..+.+|.+|.|+.|.++.+|... .+|. |+.|++..|+++....   .   .|..+         -....
T Consensus       185 It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~  264 (873)
T KOG4194|consen  185 ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA  264 (873)
T ss_pred             ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcc
Confidence            5544 345677778888888888888887644 4477 8888887777665432   1   11111         01123


Q ss_pred             hhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975          283 MKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD  358 (363)
Q Consensus       283 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~  358 (363)
                      +..+.++++|++..|++..... +.+.+++.|    +.|++++|......+.+....++|+.|+++.|.+.+..++
T Consensus       265 Fy~l~kme~l~L~~N~l~~vn~-g~lfgLt~L----~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~  335 (873)
T KOG4194|consen  265 FYGLEKMEHLNLETNRLQAVNE-GWLFGLTSL----EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG  335 (873)
T ss_pred             eeeecccceeecccchhhhhhc-ccccccchh----hhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence            4556677777777777665433 455566666    7788887765555556666777888888888877665544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.49  E-value=1.7e-13  Score=135.54  Aligned_cols=217  Identities=18%  Similarity=0.177  Sum_probs=118.7

Q ss_pred             HHHHHhhhh-cccceeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcC--
Q 017975          130 MALWIANEI-EEEEKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQS--  206 (363)
Q Consensus       130 ~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~--  206 (363)
                      .|....+++ ......+......++.+|..- ..+++.|++..|.++.+|..  +++|++|++++|.++.+|.. ..+  
T Consensus       190 ~a~~r~~~Cl~~~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l-p~sL~  265 (788)
T PRK15387        190 AVVQKMRACLNNGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL-PPGLL  265 (788)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc-ccccc
Confidence            333333333 344456666777777766522 24677777777777777653  46777777777776665531 110  


Q ss_pred             ---------------CCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhhc---c--------------
Q 017975          207 ---------------LPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKA---L--------------  254 (363)
Q Consensus       207 ---------------l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~---L--------------  254 (363)
                                     ..+|+.|++++| .++.+|..   +++|++|++++|+++.+|.....   |              
T Consensus       266 ~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp  341 (788)
T PRK15387        266 ELSIFSNPLTHLPALPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLP  341 (788)
T ss_pred             eeeccCCchhhhhhchhhcCEEECcCC-cccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccc
Confidence                           123444444444 34444431   25677777777766665542111   1              


Q ss_pred             c-hhccccCcCccCcCCC--CCCCCC--------CcccchhhhccccccceEEEEeccCccc-----------ccccCCC
Q 017975          255 V-LRMLHCGSNHWPIAEE--GNVLSD--------DAESLMKEIHCLEQLNLIALSLRGSRGV-----------ENFLKFP  312 (363)
Q Consensus       255 ~-L~~L~~~~~~l~~lp~--~~l~~l--------~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----------~~l~~l~  312 (363)
                      . |+.|++++|+++.+|.  .++..+        .+|..   ..+|+.|++.+|.+......           ..+.+++
T Consensus       342 ~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP  418 (788)
T PRK15387        342 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLP  418 (788)
T ss_pred             cccceEecCCCccCCCCCCCcccceehhhccccccCccc---ccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCC
Confidence            1 5566666666666664  222222        12211   23556666666655432110           1122233


Q ss_pred             chhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975          313 KLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD  358 (363)
Q Consensus       313 ~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~  358 (363)
                      .++..|+.|++++|.. ...|..+.++++|+.|++++|++.+..|.
T Consensus       419 ~l~~~L~~L~Ls~NqL-t~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        419 MLPSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             cchhhhhhhhhccCcc-cccChHHhhccCCCeEECCCCCCCchHHH
Confidence            3334456677776553 33456788899999999999998876554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.41  E-value=2e-14  Score=127.00  Aligned_cols=212  Identities=25%  Similarity=0.293  Sum_probs=157.3

Q ss_pred             ceeEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCC
Q 017975          142 EKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH  219 (363)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~  219 (363)
                      ...+.+.+.+++.+|.--. +....+.+..|.|+.+|.  |..+++||.|+|++|.|+.+.++.|.+++.|-.|-+.++.
T Consensus        48 g~~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   48 GGIVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             CceEEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence            3566777778888775332 577889999999999984  8899999999999999999999989999999988888855


Q ss_pred             CccccCcc-ccCCCCCCEEEccCCCCCccch-hhhccc-hhccccCcCccCcCCCC---CCCCC----------------
Q 017975          220 YLTELPVG-ISSLVSLHHLDLSSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIAEEG---NVLSD----------------  277 (363)
Q Consensus       220 ~~~~lp~~-i~~L~~L~~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~~---~l~~l----------------  277 (363)
                      .++.+|+. +++|..|+.|.+.-|.+.-++. .+..|+ +..|.+..|.+..++.+   .+..+                
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL  206 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL  206 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence            89998864 6778888888887777776654 456666 66666666666655541   11111                


Q ss_pred             ---------------------------------------------------------Ccc-cchhhhccccccceEEEEe
Q 017975          278 ---------------------------------------------------------DAE-SLMKEIHCLEQLNLIALSL  299 (363)
Q Consensus       278 ---------------------------------------------------------~~~-~~l~~l~~L~~L~l~~~~~  299 (363)
                                                                               ..| ..++.+++|++|++++|.+
T Consensus       207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i  286 (498)
T KOG4237|consen  207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI  286 (498)
T ss_pred             chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence                                                                     111 2477899999999999999


Q ss_pred             ccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975          300 RGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       300 ~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  359 (363)
                      +...+ ..|.++.++    +.|+|..|+.....-..|.++..|++|++++|++....|..
T Consensus       287 ~~i~~-~aFe~~a~l----~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a  341 (498)
T KOG4237|consen  287 TRIED-GAFEGAAEL----QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA  341 (498)
T ss_pred             chhhh-hhhcchhhh----hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc
Confidence            87655 667777777    88888887643333345778888888888888877655543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.40  E-value=2e-12  Score=128.51  Aligned_cols=190  Identities=22%  Similarity=0.244  Sum_probs=114.8

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~  222 (363)
                      ..+...+.+++.+|..- .++++.|++++|.++.+|... .++|++|++++|.++.+|.. +  ..+|+.|+|++| .+.
T Consensus       181 ~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~-l--~~~L~~L~Ls~N-~L~  254 (754)
T PRK15370        181 TELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPAT-L--PDTIQEMELSIN-RIT  254 (754)
T ss_pred             eEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChh-h--hccccEEECcCC-ccC
Confidence            34555666666666421 357889999999988887532 35888888888888887765 3  246778888887 566


Q ss_pred             ccCccccCCCCCCEEEccCCCCCccchhhhccchhccccCcCccCcCCC---CCCCCC--------Ccccchhhhccccc
Q 017975          223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEE---GNVLSD--------DAESLMKEIHCLEQ  291 (363)
Q Consensus       223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~L~~L~~~~~~l~~lp~---~~l~~l--------~~~~~l~~l~~L~~  291 (363)
                      .+|..+.  .+|++|++++|+++.+|..+.. .|+.|++++|+++.+|.   .++..+        .+|..+  .++|+.
T Consensus       255 ~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~~-sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~  329 (754)
T PRK15370        255 ELPERLP--SALQSLDLFHNKISCLPENLPE-ELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL--PPGLKT  329 (754)
T ss_pred             cCChhHh--CCCCEEECcCCccCccccccCC-CCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc--ccccee
Confidence            7776664  4677788877777777765531 26666777777776664   111111        112211  245666


Q ss_pred             cceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975          292 LNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED  354 (363)
Q Consensus       292 L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~  354 (363)
                      |.+.+|.+... + ..+      +..|+.|++++|+.. ..+..+  .++|+.|+|++|.+..
T Consensus       330 L~Ls~N~Lt~L-P-~~l------~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~  381 (754)
T PRK15370        330 LEAGENALTSL-P-ASL------PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN  381 (754)
T ss_pred             ccccCCccccC-C-hhh------cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC
Confidence            66666665532 2 111      123477777776532 222222  2466777777766543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.39  E-value=5.3e-15  Score=130.96  Aligned_cols=186  Identities=24%  Similarity=0.310  Sum_probs=111.1

Q ss_pred             ccccccceEEEeecccccccC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCE
Q 017975          158 IEEWEGVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHH  236 (363)
Q Consensus       158 ~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~  236 (363)
                      +.....++.++.+.|.+..++ +++.+..+..++..+|++..+|++ +.++.+|..|++.+| .++.+|+..-.++.|+.
T Consensus       110 i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~-~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~  187 (565)
T KOG0472|consen  110 IGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPED-MVNLSKLSKLDLEGN-KLKALPENHIAMKRLKH  187 (565)
T ss_pred             HhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchH-HHHHHHHHHhhcccc-chhhCCHHHHHHHHHHh
Confidence            444455556666666555554 355556666666666666666665 555666666666666 55555555555666666


Q ss_pred             EEccCCCCCccchhhhccc-hhccccCcCccCcCCC-CC---CCCC--------Ccccch-hhhccccccceEEEEeccC
Q 017975          237 LDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEE-GN---VLSD--------DAESLM-KEIHCLEQLNLIALSLRGS  302 (363)
Q Consensus       237 L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~-~~---l~~l--------~~~~~l-~~l~~L~~L~l~~~~~~~~  302 (363)
                      ||...|-+..+|+.++.+. |..|++..|++..+|. ..   +..+        ..|+.. ..+.++..|++.+|.+.+.
T Consensus       188 ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~  267 (565)
T KOG0472|consen  188 LDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV  267 (565)
T ss_pred             cccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC
Confidence            6666666666666666666 6666666666666664 10   1111        233332 3566667777777766543


Q ss_pred             cccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975          303 RGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       303 ~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l  353 (363)
                      .  +.+.-+.++    .+|++++|. +...+.+++++ +|+.|-+.||+.-
T Consensus       268 P--de~clLrsL----~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  268 P--DEICLLRSL----ERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             c--hHHHHhhhh----hhhcccCCc-cccCCcccccc-eeeehhhcCCchH
Confidence            2  333444444    778887744 45556677777 8888888888754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.36  E-value=8.7e-14  Score=134.81  Aligned_cols=130  Identities=25%  Similarity=0.308  Sum_probs=78.6

Q ss_pred             hcCCCCCCEEEcccCCCccccCcc-ccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCccc
Q 017975          204 FQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAES  281 (363)
Q Consensus       204 ~~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~  281 (363)
                      +.++++||+|+|++| .+.++|++ +.++..|+.|+||||+++.+|..+.++. |+.|..+.|++..+|           
T Consensus       379 l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-----------  446 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-----------  446 (1081)
T ss_pred             hccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-----------
Confidence            556666666666666 56666643 4566666666666666666666666666 666666666666555           


Q ss_pred             chhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccC
Q 017975          282 LMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDS  350 (363)
Q Consensus       282 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c  350 (363)
                      .+..++.|+.++++.|.++...-.....+ ++    |++|++++|...-.+...|..++++...++.-+
T Consensus       447 e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~----LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  447 ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PN----LKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhhcCcceEEecccchhhhhhhhhhCCC-cc----cceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            45566677777777777665433222111 33    377777777654444445555555555555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.28  E-value=7.8e-12  Score=124.32  Aligned_cols=147  Identities=21%  Similarity=0.265  Sum_probs=105.8

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~  222 (363)
                      ..+...++.++.+|... ..+++.|++++|.++.+|.. -..+|+.|++++|.+..+|.. +.  .+|++|++++| .++
T Consensus       202 ~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~-l~~~L~~L~Ls~N~L~~LP~~-l~--s~L~~L~Ls~N-~L~  275 (754)
T PRK15370        202 TTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPAT-LPDTIQEMELSINRITELPER-LP--SALQSLDLFHN-KIS  275 (754)
T ss_pred             cEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChh-hhccccEEECcCCccCcCChh-Hh--CCCCEEECcCC-ccC
Confidence            34555666777666432 36899999999999988752 235799999999999988876 32  57999999998 788


Q ss_pred             ccCccccCCCCCCEEEccCCCCCccchhhhccchhccccCcCccCcCCC---CCCCCC--------Ccccchhhhccccc
Q 017975          223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEE---GNVLSD--------DAESLMKEIHCLEQ  291 (363)
Q Consensus       223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~L~~L~~~~~~l~~lp~---~~l~~l--------~~~~~l~~l~~L~~  291 (363)
                      .+|..+.  .+|++|++++|+++.+|..+.. .|..|++++|.++.+|.   .++..+        .+|..+  .++|+.
T Consensus       276 ~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~-sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~  350 (754)
T PRK15370        276 CLPENLP--EELRYLSVYDNSIRTLPAHLPS-GITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASL--PPELQV  350 (754)
T ss_pred             ccccccC--CCCcEEECCCCccccCcccchh-hHHHHHhcCCccccCCccccccceeccccCCccccCChhh--cCcccE
Confidence            8998775  5899999999999998865431 16777777788777765   333333        223222  247777


Q ss_pred             cceEEEEec
Q 017975          292 LNLIALSLR  300 (363)
Q Consensus       292 L~l~~~~~~  300 (363)
                      |++.+|.+.
T Consensus       351 L~Ls~N~L~  359 (754)
T PRK15370        351 LDVSKNQIT  359 (754)
T ss_pred             EECCCCCCC
Confidence            777777665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.20  E-value=1.9e-12  Score=125.71  Aligned_cols=175  Identities=23%  Similarity=0.326  Sum_probs=96.5

Q ss_pred             ccceEEEeecccccccCC-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEcc
Q 017975          162 EGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLS  240 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~  240 (363)
                      .++++++++.|.+..+|+ +..+.+|+.+...+|++..+|.. +.....|++|.+..| .+..+|....++.+|++|+|.
T Consensus       241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~r-i~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLR-ISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHH-HhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeeh
Confidence            455666666666666553 35566666666666666555555 555666666666666 566666666666666777776


Q ss_pred             CCCCCccchhhhccc---hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhh
Q 017975          241 STKVRGLPQELKALV---LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNI  317 (363)
Q Consensus       241 ~~~l~~lP~~i~~L~---L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~  317 (363)
                      .|++..+|..+..-.   |+.|+.++|.+..+|.         ..=...+.|+.|++.+|.+.+..- +-+..+.+|   
T Consensus       319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~---------~~e~~~~~Lq~LylanN~Ltd~c~-p~l~~~~hL---  385 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS---------YEENNHAALQELYLANNHLTDSCF-PVLVNFKHL---  385 (1081)
T ss_pred             hccccccchHHHhhhhHHHHHHhhhhcccccccc---------ccchhhHHHHHHHHhcCcccccch-hhhccccce---
Confidence            666666666432222   6666666666666663         111223455555555555544322 233333443   


Q ss_pred             hheeeecccCCCCcCCcccccccccceeeeccCCC
Q 017975          318 TQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNL  352 (363)
Q Consensus       318 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~  352 (363)
                       +.|+|++|.....+-..+.+++.|+.|+++||..
T Consensus       386 -KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL  419 (1081)
T KOG0618|consen  386 -KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL  419 (1081)
T ss_pred             -eeeeecccccccCCHHHHhchHHhHHHhcccchh
Confidence             6666665542222223455566666666666543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.18  E-value=8.9e-13  Score=121.74  Aligned_cols=176  Identities=26%  Similarity=0.329  Sum_probs=137.2

Q ss_pred             cccceEEEeecccccccCC-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 017975          161 WEGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDL  239 (363)
Q Consensus       161 ~~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l  239 (363)
                      +......+++.|.+..+|. +..+..|..+.+..|.+..+|.. +.++..|.+|||+.| .+..+|..++.|+ |+.|-+
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence            3455667888888888874 56677788888888888888877 888999999999999 7888898898887 899999


Q ss_pred             cCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhh
Q 017975          240 SSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNIT  318 (363)
Q Consensus       240 ~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L  318 (363)
                      ++|+++.+|..++.+. |..|+.++|.+..+|          ..++++.+|+.|.+..|.+....  +.+..++     |
T Consensus       151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slp----------sql~~l~slr~l~vrRn~l~~lp--~El~~Lp-----L  213 (722)
T KOG0532|consen  151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLP----------SQLGYLTSLRDLNVRRNHLEDLP--EELCSLP-----L  213 (722)
T ss_pred             ecCccccCCcccccchhHHHhhhhhhhhhhch----------HHhhhHHHHHHHHHhhhhhhhCC--HHHhCCc-----e
Confidence            9999999999998555 888888999888887          67888888888888888876543  3344333     3


Q ss_pred             heeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975          319 QALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD  358 (363)
Q Consensus       319 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~  358 (363)
                      ..|+++.|+ +...|..|.+|+.|++|-|.+|+. +++|.
T Consensus       214 i~lDfScNk-is~iPv~fr~m~~Lq~l~LenNPL-qSPPA  251 (722)
T KOG0532|consen  214 IRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNPL-QSPPA  251 (722)
T ss_pred             eeeecccCc-eeecchhhhhhhhheeeeeccCCC-CCChH
Confidence            778888654 444466888899999998887764 44444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.13  E-value=9.6e-11  Score=110.16  Aligned_cols=185  Identities=25%  Similarity=0.351  Sum_probs=144.9

Q ss_pred             CccccccccceEEEeecccccccCCCCCCC--CccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCC
Q 017975          155 APKIEEWEGVKRISLMENEIQSLPQIPTCP--RLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLV  232 (363)
Q Consensus       155 ~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~--~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~  232 (363)
                      .......+.+..+++.++.+..++......  +|+.|++++|.+..++.. +..+++|+.|++++| .+..+|...+.++
T Consensus       109 ~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~  186 (394)
T COG4886         109 ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLS  186 (394)
T ss_pred             chhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhh
Confidence            334445567899999999999988765554  899999999999988644 789999999999999 8999998877899


Q ss_pred             CCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCC
Q 017975          233 SLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKF  311 (363)
Q Consensus       233 ~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l  311 (363)
                      .|+.|++++|.+..+|..+..+. |..+.++.|.....+          ..+..+.++..|.+.++.+...  ...+..+
T Consensus       187 ~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~----------~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l  254 (394)
T COG4886         187 NLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL----------SSLSNLKNLSGLELSNNKLEDL--PESIGNL  254 (394)
T ss_pred             hhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecc----------hhhhhcccccccccCCceeeec--cchhccc
Confidence            99999999999999999887777 888888888544444          5677888888888777776542  1334555


Q ss_pred             CchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975          312 PKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       312 ~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  359 (363)
                      +++    ++|++++|.....  ..+..+.+|+.|+++++.....+|..
T Consensus       255 ~~l----~~L~~s~n~i~~i--~~~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         255 SNL----ETLDLSNNQISSI--SSLGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccc----ceecccccccccc--ccccccCccCEEeccCccccccchhh
Confidence            555    9999998764333  23888999999999999887766654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=3.8e-11  Score=98.14  Aligned_cols=127  Identities=25%  Similarity=0.354  Sum_probs=39.5

Q ss_pred             ccccceEEEeecccccccCCCC-CCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcccc-CCCCCCEE
Q 017975          160 EWEGVKRISLMENEIQSLPQIP-TCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIS-SLVSLHHL  237 (363)
Q Consensus       160 ~~~~l~~L~l~~~~~~~l~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~-~L~~L~~L  237 (363)
                      ...+++.|++.+|.++.+..+. .+.+|+.|++++|.++.+..  +..+++|+.|++++| .++.+++.+. .+++|++|
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence            3345677777777777666655 46677777777777776654  666777777777777 5666654442 46777777


Q ss_pred             EccCCCCCccch--hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceE
Q 017975          238 DLSSTKVRGLPQ--ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLI  295 (363)
Q Consensus       238 ~l~~~~l~~lP~--~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~  295 (363)
                      ++++|+|..+-.  .+..++ |+.|++..|.+..-+.      .....+..+++|+.|+-.
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~------YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN------YRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTT------HHHHHHHH-TT-SEETTE
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhh------HHHHHHHHcChhheeCCE
Confidence            777776665422  233334 6666666665544331      112344556666666543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.10  E-value=9.5e-11  Score=118.46  Aligned_cols=211  Identities=22%  Similarity=0.216  Sum_probs=130.5

Q ss_pred             eEEecCCCCCCCccccccccceEEEeeccc--ccccCC--CCCCCCccEEEeccC-CccccchHHhcCCCCCCEEEcccC
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENE--IQSLPQ--IPTCPRLQTLLLEYN-HIEEITESFFQSLPSLRVLNLSVN  218 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--~~~l~~--~~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~~  218 (363)
                      .+...+.....++.....++++.|-+..|.  +..++.  |..++.|++||+++| .+..+|.. ++.+-+||||+++++
T Consensus       527 r~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t  605 (889)
T KOG4658|consen  527 RMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT  605 (889)
T ss_pred             EEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC
Confidence            444444455555554455678999998885  666665  778999999999987 45667666 899999999999999


Q ss_pred             CCccccCccccCCCCCCEEEccCCC-CCccchhhhccc-hhccccCcCccCcCC----C-CCCCCC--------------
Q 017975          219 HYLTELPVGISSLVSLHHLDLSSTK-VRGLPQELKALV-LRMLHCGSNHWPIAE----E-GNVLSD--------------  277 (363)
Q Consensus       219 ~~~~~lp~~i~~L~~L~~L~l~~~~-l~~lP~~i~~L~-L~~L~~~~~~l~~lp----~-~~l~~l--------------  277 (363)
                       .+..+|.++++|..|.||++..+. +..+|.....|+ |++|.+.......-.    . .++.++              
T Consensus       606 -~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e  684 (889)
T KOG4658|consen  606 -GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLE  684 (889)
T ss_pred             -CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHh
Confidence             888999999999999999999884 444444444466 666655443311000    0 111111              


Q ss_pred             -----------------------CcccchhhhccccccceEEEEeccCcccccccCCCch--hhhhheeeecccCCCCcC
Q 017975          278 -----------------------DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL--QNITQALHIKDCNSLPLN  332 (363)
Q Consensus       278 -----------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l--~~~L~~L~l~~~~~~~~~  332 (363)
                                             ..+..+..+.+|+.|.+.++....... ....+...+  ...+..+.+.+|..... 
T Consensus       685 ~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~-~~~~~~~~~~~f~~l~~~~~~~~~~~r~-  762 (889)
T KOG4658|consen  685 DLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVI-EWEESLIVLLCFPNLSKVSILNCHMLRD-  762 (889)
T ss_pred             hhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhc-ccccccchhhhHHHHHHHHhhccccccc-
Confidence                                   233344556666666666665542211 111111111  11224444445443222 


Q ss_pred             CcccccccccceeeeccCCCCCcccc
Q 017975          333 LLHLANMEHLQLFSIWDSNLEDWNVD  358 (363)
Q Consensus       333 ~~~l~~l~~L~~L~l~~c~~l~~~~~  358 (363)
                      +.+....++|+.|.+..|...+.++.
T Consensus       763 l~~~~f~~~L~~l~l~~~~~~e~~i~  788 (889)
T KOG4658|consen  763 LTWLLFAPHLTSLSLVSCRLLEDIIP  788 (889)
T ss_pred             cchhhccCcccEEEEecccccccCCC
Confidence            44556678999999999988877654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.10  E-value=3.7e-10  Score=112.11  Aligned_cols=177  Identities=19%  Similarity=0.205  Sum_probs=104.4

Q ss_pred             ccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccC
Q 017975          162 EGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSS  241 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~  241 (363)
                      .+-..|+++.+.++.+|... .++|+.|++.+|.++.+|..    +++|++|++++| .++.+|...   ++|++|++++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~lp---~sL~~L~Ls~  271 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVLP---PGLLELSIFS  271 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCcc---cccceeeccC
Confidence            34567999999999988622 25899999999999998752    589999999999 788888533   4555665555


Q ss_pred             CCCCccchhhhc-----------------cc-hhccccCcCccCcCCC--CCCCCC--------Ccccchhhhccccccc
Q 017975          242 TKVRGLPQELKA-----------------LV-LRMLHCGSNHWPIAEE--GNVLSD--------DAESLMKEIHCLEQLN  293 (363)
Q Consensus       242 ~~l~~lP~~i~~-----------------L~-L~~L~~~~~~l~~lp~--~~l~~l--------~~~~~l~~l~~L~~L~  293 (363)
                      |.++.+|.....                 +. |+.|++++|.+..+|.  .++..+        .+|.   -..+|+.|+
T Consensus       272 N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~---lp~~Lq~Ld  348 (788)
T PRK15387        272 NPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPT---LPSGLQELS  348 (788)
T ss_pred             CchhhhhhchhhcCEEECcCCccccccccccccceeECCCCccccCCCCcccccccccccCccccccc---cccccceEe
Confidence            555544432111                 12 6666677777766654  222222        1111   113677777


Q ss_pred             eEEEEeccCccc-----------ccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975          294 LIALSLRGSRGV-----------ENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED  354 (363)
Q Consensus       294 l~~~~~~~~~~~-----------~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~  354 (363)
                      +++|.+....+.           ..+..++.++..|+.|++++|... ..+..   .++|+.|++++|.+..
T Consensus       349 LS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss  416 (788)
T PRK15387        349 VSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS  416 (788)
T ss_pred             cCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC
Confidence            777776642210           112222333334566666665422 11111   2466777777776543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.03  E-value=2.8e-10  Score=93.06  Aligned_cols=119  Identities=29%  Similarity=0.391  Sum_probs=52.3

Q ss_pred             cceeEEecCCCCCCCcccc-ccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCC
Q 017975          141 EEKFLVRAGVGLTDAPKIE-EWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH  219 (363)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~-~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~  219 (363)
                      +...+...+..++.+..+. .+.+++.|++++|.++.++.+..+++|++|++++|.++.+.+.....+++|+.|++++| 
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-   98 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-   98 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS-
T ss_pred             ccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-
Confidence            3456777788888777776 57899999999999999999999999999999999999987663457999999999999 


Q ss_pred             CccccC--ccccCCCCCCEEEccCCCCCccch----hhhccc-hhccc
Q 017975          220 YLTELP--VGISSLVSLHHLDLSSTKVRGLPQ----ELKALV-LRMLH  260 (363)
Q Consensus       220 ~~~~lp--~~i~~L~~L~~L~l~~~~l~~lP~----~i~~L~-L~~L~  260 (363)
                      .+..+-  ..++.+++|++|++.+|.+..-+.    -+..++ |+.||
T Consensus        99 ~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   99 KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             ---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            565543  356789999999999999886543    344555 77644

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.95  E-value=3.3e-11  Score=111.55  Aligned_cols=157  Identities=24%  Similarity=0.332  Sum_probs=127.3

Q ss_pred             ccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCC
Q 017975          156 PKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLH  235 (363)
Q Consensus       156 ~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~  235 (363)
                      ..+..+..+..++++.|++..+|.-...--|++|.+++|+++.+|+. ++.+.+|..||.+.| .+..+|..++++.+|+
T Consensus       115 ~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsql~~l~slr  192 (722)
T KOG0532|consen  115 EAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLR  192 (722)
T ss_pred             hhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhchHHhhhHHHHH
Confidence            34566678888999999988888543344589999999999999888 788899999999999 8888999999999999


Q ss_pred             EEEccCCCCCccchhhhccchhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchh
Q 017975          236 HLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQ  315 (363)
Q Consensus       236 ~L~l~~~~l~~lP~~i~~L~L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~  315 (363)
                      .|+++.|.+..+|+++..|.|..||.+||++..+|          -.+.+|+.|+.|.+.+|.+.+..  ..++.....+
T Consensus       193 ~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iP----------v~fr~m~~Lq~l~LenNPLqSPP--AqIC~kGkVH  260 (722)
T KOG0532|consen  193 DLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLP----------VDFRKMRHLQVLQLENNPLQSPP--AQICEKGKVH  260 (722)
T ss_pred             HHHHhhhhhhhCCHHHhCCceeeeecccCceeecc----------hhhhhhhhheeeeeccCCCCCCh--HHHHhcccee
Confidence            99999999999999999888999999999999888          78899999999999999887543  3333322221


Q ss_pred             hhhheeeecccC
Q 017975          316 NITQALHIKDCN  327 (363)
Q Consensus       316 ~~L~~L~l~~~~  327 (363)
                      - -++|+..-|.
T Consensus       261 I-FKyL~~qA~q  271 (722)
T KOG0532|consen  261 I-FKYLSTQACQ  271 (722)
T ss_pred             e-eeeecchhcc
Confidence            1 2777877773

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.94  E-value=8.3e-11  Score=101.03  Aligned_cols=133  Identities=29%  Similarity=0.447  Sum_probs=91.4

Q ss_pred             ccccccceEEEeecccccccCC-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCE
Q 017975          158 IEEWEGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHH  236 (363)
Q Consensus       158 ~~~~~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~  236 (363)
                      +..|..+..+++++|.++.+.+ ..-.+.+|.|++++|.+..+..  +..+++|..||||+| .+.++-..-.+|-+.++
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKT  356 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEee
Confidence            3356677777777777776653 3455777777777777776654  667777777777777 56666555566777777


Q ss_pred             EEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccC
Q 017975          237 LDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGS  302 (363)
Q Consensus       237 L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~  302 (363)
                      |.|++|.+..+ +++++|. |..|++..|+++.+.        ....+++++.|+++.+.+|.+...
T Consensus       357 L~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ld--------eV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  357 LKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELD--------EVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             eehhhhhHhhh-hhhHhhhhheeccccccchhhHH--------HhcccccccHHHHHhhcCCCcccc
Confidence            77777777666 4667777 777777777765543        335677777777777777766543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.90  E-value=1.6e-10  Score=105.27  Aligned_cols=188  Identities=20%  Similarity=0.189  Sum_probs=112.4

Q ss_pred             cccceEEEeeccccccc--CCCCCC---CCccEEEeccCCcccc----chHHhcCC-CCCCEEEcccCCCcc-----ccC
Q 017975          161 WEGVKRISLMENEIQSL--PQIPTC---PRLQTLLLEYNHIEEI----TESFFQSL-PSLRVLNLSVNHYLT-----ELP  225 (363)
Q Consensus       161 ~~~l~~L~l~~~~~~~l--~~~~~l---~~L~~L~l~~~~l~~~----~~~~~~~l-~~L~~L~L~~~~~~~-----~lp  225 (363)
                      +++++.|+++++.+...  +.+..+   ++|+.|++++|.+...    ....+..+ ++|+.|++++| .++     .++
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~  158 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALA  158 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHH
Confidence            46788888888776531  112122   5588888888876631    11225566 78888888888 444     345


Q ss_pred             ccccCCCCCCEEEccCCCCCc-----cchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEe
Q 017975          226 VGISSLVSLHHLDLSSTKVRG-----LPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSL  299 (363)
Q Consensus       226 ~~i~~L~~L~~L~l~~~~l~~-----lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~  299 (363)
                      ..+..+.+|++|++++|.+..     ++..+.... |+.|++++|.+.....     ...+..+..+++|+.|++++|.+
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-----~~l~~~~~~~~~L~~L~ls~n~l  233 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-----SALAETLASLKSLEVLNLGDNNL  233 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH-----HHHHHHhcccCCCCEEecCCCcC
Confidence            566677788888888887773     444455445 7777777776542210     01123345567788888888776


Q ss_pred             ccCccccccc-CCCchhhhhheeeecccCCC----CcCCcccccccccceeeeccCCCCCc
Q 017975          300 RGSRGVENFL-KFPKLQNITQALHIKDCNSL----PLNLLHLANMEHLQLFSIWDSNLEDW  355 (363)
Q Consensus       300 ~~~~~~~~l~-~l~~l~~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~c~~l~~  355 (363)
                      .+... ..+. .+..-...|++|++++|...    ......+..+++|+.+++++|.....
T Consensus       234 ~~~~~-~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         234 TDAGA-AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             chHHH-HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            54211 1111 11111123488888887632    11123456667888889988887654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.86  E-value=4.2e-10  Score=102.55  Aligned_cols=182  Identities=25%  Similarity=0.229  Sum_probs=119.0

Q ss_pred             ccceEEEeeccccccc--------CCCCCCCCccEEEeccCCccccchHHhcCCCC---CCEEEcccCCCcc-----ccC
Q 017975          162 EGVKRISLMENEIQSL--------PQIPTCPRLQTLLLEYNHIEEITESFFQSLPS---LRVLNLSVNHYLT-----ELP  225 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l--------~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~---L~~L~L~~~~~~~-----~lp  225 (363)
                      +.++++++.++.+...        ..+..+++|+.|++++|.+....+..+..+..   |++|++++|+ +.     .+.
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~  129 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLA  129 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHH
Confidence            4577788777765521        12456889999999999887544444555544   9999999994 44     334


Q ss_pred             ccccCC-CCCCEEEccCCCCCc-----cchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEE
Q 017975          226 VGISSL-VSLHHLDLSSTKVRG-----LPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALS  298 (363)
Q Consensus       226 ~~i~~L-~~L~~L~l~~~~l~~-----lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~  298 (363)
                      ..+..+ ++|+.|++++|.++.     ++..+..+. |+.|+++.|.+..-.     ....+..+...++|+.|++.+|.
T Consensus       130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~l~~~l~~~~~L~~L~L~~n~  204 (319)
T cd00116         130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG-----IRALAEGLKANCNLEVLDLNNNG  204 (319)
T ss_pred             HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH-----HHHHHHHHHhCCCCCEEeccCCc
Confidence            556677 899999999998883     445555555 888888887765210     00112334455699999999988


Q ss_pred             eccCccc---ccccCCCchhhhhheeeecccCCCCcCCcccc-----cccccceeeeccCCCC
Q 017975          299 LRGSRGV---ENFLKFPKLQNITQALHIKDCNSLPLNLLHLA-----NMEHLQLFSIWDSNLE  353 (363)
Q Consensus       299 ~~~~~~~---~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~c~~l  353 (363)
                      +.+....   ..+..++++    ++|++++|......+..+.     ..+.|+.|++++|.+.
T Consensus       205 i~~~~~~~l~~~~~~~~~L----~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         205 LTDEGASALAETLASLKSL----EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             cChHHHHHHHHHhcccCCC----CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            7543211   122333444    9999999864221122221     2479999999999875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.85  E-value=5.3e-10  Score=96.14  Aligned_cols=127  Identities=25%  Similarity=0.267  Sum_probs=67.7

Q ss_pred             CCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhcccc
Q 017975          183 CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHC  261 (363)
Q Consensus       183 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~  261 (363)
                      .+.|..+|+++|.++.+..+ ..-++.+|+|++|.| .+..+- ++..|++|+.|||++|.+.++-..-.+|- ...|.+
T Consensus       283 Wq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N-~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDES-VKLAPKLRRLILSQN-RIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             Hhhhhhccccccchhhhhhh-hhhccceeEEecccc-ceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            34566666666666666555 566666666666666 455443 36666666666666665554432222222 344444


Q ss_pred             CcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccC
Q 017975          262 GSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCN  327 (363)
Q Consensus       262 ~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~  327 (363)
                      +.|.++.+           ..++.+-+|..|++.+|++........++++|.+    +.+.+.+|+
T Consensus       360 a~N~iE~L-----------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCL----E~l~L~~NP  410 (490)
T KOG1259|consen  360 AQNKIETL-----------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCL----ETLRLTGNP  410 (490)
T ss_pred             hhhhHhhh-----------hhhHhhhhheeccccccchhhHHHhcccccccHH----HHHhhcCCC
Confidence            45554443           2455555556666665555444444444444444    444444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.80  E-value=2.9e-09  Score=100.17  Aligned_cols=165  Identities=26%  Similarity=0.373  Sum_probs=134.5

Q ss_pred             eEEecCCCCCCCccccccc--cceEEEeecccccccC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975          144 FLVRAGVGLTDAPKIEEWE--GVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~--~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      .+......+..++......  +++.|++..|.+..+| .+..+++|+.|++++|.+..+++. .+.++.|+.|++++| .
T Consensus       120 ~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N-~  197 (394)
T COG4886         120 SLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGN-K  197 (394)
T ss_pred             EEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh-hhhhhhhhheeccCC-c
Confidence            4455566666676655554  8999999999999995 789999999999999999999886 458999999999999 8


Q ss_pred             ccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEe
Q 017975          221 LTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSL  299 (363)
Q Consensus       221 ~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~  299 (363)
                      +..+|..+..+.+|++|.+++|.+...|..+.++. +..+.+.+|++..++          ..++.+.+++.|++.+|.+
T Consensus       198 i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~----------~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         198 ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLP----------ESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeecc----------chhccccccceeccccccc
Confidence            99999888888889999999998888888888888 888778888876655          6777788888888888888


Q ss_pred             ccCcccccccCCCchhhhhheeeecccC
Q 017975          300 RGSRGVENFLKFPKLQNITQALHIKDCN  327 (363)
Q Consensus       300 ~~~~~~~~l~~l~~l~~~L~~L~l~~~~  327 (363)
                      .....   ++.+.++    +.|+++++.
T Consensus       268 ~~i~~---~~~~~~l----~~L~~s~n~  288 (394)
T COG4886         268 SSISS---LGSLTNL----RELDLSGNS  288 (394)
T ss_pred             ccccc---ccccCcc----CEEeccCcc
Confidence            76543   5555555    777877754

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.80  E-value=2.5e-10  Score=101.47  Aligned_cols=199  Identities=20%  Similarity=0.264  Sum_probs=130.1

Q ss_pred             cceeEEecCCCCCCCc--cccccccceEEEeecccccccC--CCCCCCCccEEEecc-CCccccchHHhcCCCCCCEEEc
Q 017975          141 EEKFLVRAGVGLTDAP--KIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEY-NHIEEITESFFQSLPSLRVLNL  215 (363)
Q Consensus       141 ~~~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~L  215 (363)
                      +...+..+.++++.+|  .++.++++|+|++++|.|+.+.  .|..++.|..|-+.+ |+|+.++.+.|+++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            3344556667777776  4778899999999999998874  366777776665555 7787777777666555555555


Q ss_pred             ccCC-----------------------CccccCc-cccCCCCCCEEEccCCCC---------------------------
Q 017975          216 SVNH-----------------------YLTELPV-GISSLVSLHHLDLSSTKV---------------------------  244 (363)
Q Consensus       216 ~~~~-----------------------~~~~lp~-~i~~L~~L~~L~l~~~~l---------------------------  244 (363)
                      .-|+                       .+..++. ++..+..++++.+..|.+                           
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            4442                       3344443 455555555555443320                           


Q ss_pred             ---------------------Ccc--------------ch-hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhc
Q 017975          245 ---------------------RGL--------------PQ-ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIH  287 (363)
Q Consensus       245 ---------------------~~l--------------P~-~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~  287 (363)
                                           +++              |. -+..|. |+.|++++|.++.+.         +..+.+..
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~---------~~aFe~~a  298 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE---------DGAFEGAA  298 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh---------hhhhcchh
Confidence                                 000              10 122233 455555555554443         36788889


Q ss_pred             cccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975          288 CLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       288 ~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l  353 (363)
                      .++.|.+..|++..... ..|.++.++    +.|+|.+|+.....+..|..+.+|.+|.+-+|+..
T Consensus       299 ~l~eL~L~~N~l~~v~~-~~f~~ls~L----~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  299 ELQELYLTRNKLEFVSS-GMFQGLSGL----KTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhhhhhcCcchHHHHHH-Hhhhccccc----eeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            99999999998765543 456666666    88999998876666788999999999999887753

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=5.9e-09  Score=70.10  Aligned_cols=60  Identities=42%  Similarity=0.615  Sum_probs=46.6

Q ss_pred             CCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEccCCCC
Q 017975          184 PRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKV  244 (363)
Q Consensus       184 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l  244 (363)
                      ++|++|++++|.++.+++..|.++++|++|++++| .++.+| ..+.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46788888888888888777888888888888888 556654 4678888888888888764

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.2e-08  Score=92.14  Aligned_cols=181  Identities=23%  Similarity=0.213  Sum_probs=86.6

Q ss_pred             ccccceEEEeecccccccCC----CCCCCCccEEEeccCCccccchH-HhcCCCCCCEEEcccCCCccc--cCccccCCC
Q 017975          160 EWEGVKRISLMENEIQSLPQ----IPTCPRLQTLLLEYNHIEEITES-FFQSLPSLRVLNLSVNHYLTE--LPVGISSLV  232 (363)
Q Consensus       160 ~~~~l~~L~l~~~~~~~l~~----~~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~--lp~~i~~L~  232 (363)
                      .+++++.|+++.|-+..+..    ...+++|+.|+++.|.+.....+ .-..+++|+.|.|++| .+..  +-.-...++
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSC-GLSWKDVQWILLTFP  222 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccC-CCCHHHHHHHHHhCC
Confidence            34555555555554443211    23455555555555544322111 0123455555555555 3331  111223345


Q ss_pred             CCCEEEccCCC-CCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccc--c-
Q 017975          233 SLHHLDLSSTK-VRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVE--N-  307 (363)
Q Consensus       233 ~L~~L~l~~~~-l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~-  307 (363)
                      +|+.|++.+|. +..--.+...++ |+.|+++.|.+-.++        .....+.++.|+.|.+..+.+.+...++  + 
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~--------~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~  294 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD--------QGYKVGTLPGLNQLNLSSTGIASIAEPDVESL  294 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc--------cccccccccchhhhhccccCcchhcCCCccch
Confidence            55555555552 111111222233 566666666554443        2234556667777777666655432211  1 


Q ss_pred             --ccCCCchhhhhheeeecccCC--CCcCCcccccccccceeeeccCCCCC
Q 017975          308 --FLKFPKLQNITQALHIKDCNS--LPLNLLHLANMEHLQLFSIWDSNLED  354 (363)
Q Consensus       308 --l~~l~~l~~~L~~L~l~~~~~--~~~~~~~l~~l~~L~~L~l~~c~~l~  354 (363)
                        ...++++    ++|++..|+-  .+. ...+..+++|+.|.+.+|.+..
T Consensus       295 ~kt~~f~kL----~~L~i~~N~I~~w~s-l~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  295 DKTHTFPKL----EYLNISENNIRDWRS-LNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhhcccccc----eeeecccCccccccc-cchhhccchhhhhhcccccccc
Confidence              1222333    7777777653  222 4456666677777776666543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.66  E-value=1e-08  Score=96.89  Aligned_cols=175  Identities=23%  Similarity=0.371  Sum_probs=118.4

Q ss_pred             ccccccceEEEeecccccccCC-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCE
Q 017975          158 IEEWEGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHH  236 (363)
Q Consensus       158 ~~~~~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~  236 (363)
                      +..+.++..+++..|.++.+.. +..+++|++|++++|.++.+.+  +..+..|+.|++++| .+..++ .+..+..|+.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~  166 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDIS-GLESLKSLKL  166 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence            5566789999999999999888 8889999999999999988877  778888999999999 777766 6777899999


Q ss_pred             EEccCCCCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCch
Q 017975          237 LDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL  314 (363)
Q Consensus       237 L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l  314 (363)
                      +++++|.+..++.. ...+. ++.+.++.|.+..+.           .+..+..+..+.+..|.+....+..   .+...
T Consensus       167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-----------~~~~~~~l~~~~l~~n~i~~~~~l~---~~~~~  232 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-----------GLDLLKKLVLLSLLDNKISKLEGLN---ELVML  232 (414)
T ss_pred             ccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-----------chHHHHHHHHhhcccccceeccCcc---cchhH
Confidence            99999998888664 35555 777778888776553           3344444444455555444332211   11110


Q ss_pred             hhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975          315 QNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       315 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l  353 (363)
                        .++.++++++..... ...+..+..+..|++.++...
T Consensus       233 --~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  233 --HLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             --HHHHHhcccCccccc-cccccccccccccchhhcccc
Confidence              136666666543211 134555556666666655543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.57  E-value=7.5e-08  Score=64.68  Aligned_cols=58  Identities=33%  Similarity=0.578  Sum_probs=53.7

Q ss_pred             ccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCC
Q 017975          162 EGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH  219 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~  219 (363)
                      ++++.|++.+|.++.+|  .+..+++|++|++++|.++.+++..|.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            47899999999999998  47889999999999999999999889999999999999993

...

>PLN03150 hypothetical protein; Provisional

Probab=98.54  E-value=1.5e-07  Score=93.26  Aligned_cols=81  Identities=28%  Similarity=0.404  Sum_probs=39.5

Q ss_pred             ccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCC-ccchhhhccc-hhccccCc
Q 017975          186 LQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVR-GLPQELKALV-LRMLHCGS  263 (363)
Q Consensus       186 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~-~lP~~i~~L~-L~~L~~~~  263 (363)
                      ++.|+|++|.+....+..++++++|+.|+|++|.....+|..++.+++|++|+|++|++. .+|..++.+. |+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            444555555544333333555555555555555333345555555555555555555544 2455555555 55555555


Q ss_pred             Ccc
Q 017975          264 NHW  266 (363)
Q Consensus       264 ~~l  266 (363)
                      |.+
T Consensus       500 N~l  502 (623)
T PLN03150        500 NSL  502 (623)
T ss_pred             Ccc
Confidence            443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=3e-08  Score=89.59  Aligned_cols=180  Identities=22%  Similarity=0.263  Sum_probs=118.6

Q ss_pred             cccccceEEEeecccccccC---CCCCCCCccEEEeccCCccccc--hHHhcCCCCCCEEEcccCCCccccCcc--ccCC
Q 017975          159 EEWEGVKRISLMENEIQSLP---QIPTCPRLQTLLLEYNHIEEIT--ESFFQSLPSLRVLNLSVNHYLTELPVG--ISSL  231 (363)
Q Consensus       159 ~~~~~l~~L~l~~~~~~~l~---~~~~l~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~L~~~~~~~~lp~~--i~~L  231 (363)
                      ..+++||.+++.+..+...+   -...+++++.|++++|-+....  ..+...+++|+.|+|+.|+ +...-++  -..+
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhh
Confidence            34567888888887776665   3567889999999988654422  2346788999999999883 3332211  2356


Q ss_pred             CCCCEEEccCCCCCccchhhhcc----c-hhccccCcCc-cCcCCCCCCCCCCcccchhhhccccccceEEEEeccCccc
Q 017975          232 VSLHHLDLSSTKVRGLPQELKAL----V-LRMLHCGSNH-WPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGV  305 (363)
Q Consensus       232 ~~L~~L~l~~~~l~~lP~~i~~L----~-L~~L~~~~~~-l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~  305 (363)
                      .+|+.|.|++|.++.  .++...    + |..|++..|. +..          ......-++.|+.|++.+|.+......
T Consensus       197 ~~lK~L~l~~CGls~--k~V~~~~~~fPsl~~L~L~~N~~~~~----------~~~~~~i~~~L~~LdLs~N~li~~~~~  264 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSW--KDVQWILLTFPSLEVLYLEANEIILI----------KATSTKILQTLQELDLSNNNLIDFDQG  264 (505)
T ss_pred             hhhheEEeccCCCCH--HHHHHHHHhCCcHHHhhhhcccccce----------ecchhhhhhHHhhccccCCcccccccc
Confidence            788999999998873  222222    2 6666666663 111          113345577888999988888766655


Q ss_pred             ccccCCCchhhhhheeeecccCCCCcC-Cc-----ccccccccceeeeccCCCCCc
Q 017975          306 ENFLKFPKLQNITQALHIKDCNSLPLN-LL-----HLANMEHLQLFSIWDSNLEDW  355 (363)
Q Consensus       306 ~~l~~l~~l~~~L~~L~l~~~~~~~~~-~~-----~l~~l~~L~~L~l~~c~~l~~  355 (363)
                      ...+.++.+    ..|+++.|...... +.     ....+++|+.|++..|++.+|
T Consensus       265 ~~~~~l~~L----~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w  316 (505)
T KOG3207|consen  265 YKVGTLPGL----NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW  316 (505)
T ss_pred             cccccccch----hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence            566777777    77888887741111 11     145688899999999888544

>PLN03150 hypothetical protein; Provisional

Probab=98.49  E-value=2e-07  Score=92.27  Aligned_cols=90  Identities=27%  Similarity=0.423  Sum_probs=45.1

Q ss_pred             ceEEEeecccccc-cC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccC
Q 017975          164 VKRISLMENEIQS-LP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSS  241 (363)
Q Consensus       164 l~~L~l~~~~~~~-l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~  241 (363)
                      ++.|++.+|.+.. +| .+..+++|+.|++++|.+....+..++.+++|++|+|++|.....+|+.++++++|++|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            4445555554442 22 244555555555555555433332355555555555555543345555555555555555555


Q ss_pred             CCCC-ccchhhhc
Q 017975          242 TKVR-GLPQELKA  253 (363)
Q Consensus       242 ~~l~-~lP~~i~~  253 (363)
                      |++. .+|..++.
T Consensus       500 N~l~g~iP~~l~~  512 (623)
T PLN03150        500 NSLSGRVPAALGG  512 (623)
T ss_pred             CcccccCChHHhh
Confidence            5554 24555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.47  E-value=3.7e-07  Score=83.87  Aligned_cols=84  Identities=20%  Similarity=0.378  Sum_probs=45.1

Q ss_pred             ccccceEEEeecccccccCCCCCCCCccEEEeccC-CccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEE
Q 017975          160 EWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYN-HIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLD  238 (363)
Q Consensus       160 ~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~  238 (363)
                      .+.++++|+++++.++.+|.+  ..+|+.|.+.++ .++.+|.. +  ..+|++|++++|..+..+|.+      |++|+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~  118 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSLE  118 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cceEE
Confidence            345666777776666666632  235666666654 34444432 2  245666666666555555533      44555


Q ss_pred             ccCCC---CCccchhhhcc
Q 017975          239 LSSTK---VRGLPQELKAL  254 (363)
Q Consensus       239 l~~~~---l~~lP~~i~~L  254 (363)
                      ++++.   +..+|+++..|
T Consensus       119 L~~n~~~~L~~LPssLk~L  137 (426)
T PRK15386        119 IKGSATDSIKNVPNGLTSL  137 (426)
T ss_pred             eCCCCCcccccCcchHhhe
Confidence            55443   34455554433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.40  E-value=1.4e-08  Score=97.07  Aligned_cols=162  Identities=25%  Similarity=0.339  Sum_probs=94.0

Q ss_pred             cCCCCCCCccccccccceEEEeecccccccCCC---------------------------------CCCCCccEEEeccC
Q 017975          148 AGVGLTDAPKIEEWEGVKRISLMENEIQSLPQI---------------------------------PTCPRLQTLLLEYN  194 (363)
Q Consensus       148 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~---------------------------------~~l~~L~~L~l~~~  194 (363)
                      .+.+-+..-++..+..+|+|.+.++.+..+-++                                 .....|.+.+.++|
T Consensus        95 pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN  174 (1096)
T KOG1859|consen   95 PARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN  174 (1096)
T ss_pred             CCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh
Confidence            333444445677788999999998876432211                                 11223455555666


Q ss_pred             CccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccch-hhhccchhccccCcCccCcCCCCC
Q 017975          195 HIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQ-ELKALVLRMLHCGSNHWPIAEEGN  273 (363)
Q Consensus       195 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~L~~L~~~~~~l~~lp~~~  273 (363)
                      .+..+..+ +.-++.|+.|||++| .++..- .+..+++|++|||++|.++.+|. +.....|..|.+++|-++++    
T Consensus       175 ~L~~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL----  247 (1096)
T KOG1859|consen  175 RLVLMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL----  247 (1096)
T ss_pred             hHHhHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh----
Confidence            55554444 566667777777777 444443 66667777777777777766663 22222255666666666555    


Q ss_pred             CCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccC
Q 017975          274 VLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCN  327 (363)
Q Consensus       274 l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~  327 (363)
                             ..+.+|.+|+.|+++.|-+.+-....-+..+..|    +.|+|.+|.
T Consensus       248 -------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L----~~L~LeGNP  290 (1096)
T KOG1859|consen  248 -------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSL----IVLWLEGNP  290 (1096)
T ss_pred             -------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHH----HHHhhcCCc
Confidence                   3566777777777777766544332223333333    666666655

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=8.6e-09  Score=88.72  Aligned_cols=181  Identities=22%  Similarity=0.294  Sum_probs=125.7

Q ss_pred             ccceEEEeecccccc--cC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC--ccccCCCCCCE
Q 017975          162 EGVKRISLMENEIQS--LP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP--VGISSLVSLHH  236 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~--l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~  236 (363)
                      ..+++|+++...++.  +. -+..+.+|+.|.+.++.+.+-....+.+-.+|+.|++++|..+++..  --+.++..|+.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            358889998877654  11 24678899999999999887665558888999999999998887643  23678899999


Q ss_pred             EEccCCCCCc--cchhhhccc--hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCC
Q 017975          237 LDLSSTKVRG--LPQELKALV--LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFP  312 (363)
Q Consensus       237 L~l~~~~l~~--lP~~i~~L~--L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~  312 (363)
                      |++++|.+..  +-..+....  |..|++++.+      .|+..-........+++|.+|+++++......-...+..++
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r------rnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~  338 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR------RNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN  338 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhH------hhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence            9999996543  111122222  4444443322      01111122344567889999999998765554445566666


Q ss_pred             chhhhhheeeecccCC-CCcCCcccccccccceeeeccCCC
Q 017975          313 KLQNITQALHIKDCNS-LPLNLLHLANMEHLQLFSIWDSNL  352 (363)
Q Consensus       313 ~l~~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~c~~  352 (363)
                      .+    ++|+++.|.. .|...-.+...++|.+|++.||-.
T Consensus       339 ~L----~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  339 YL----QHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             hh----eeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            66    9999999987 444456688999999999999853

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.38  E-value=4.8e-07  Score=55.98  Aligned_cols=39  Identities=36%  Similarity=0.558  Sum_probs=24.5

Q ss_pred             CCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccc
Q 017975          209 SLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLP  248 (363)
Q Consensus       209 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP  248 (363)
                      +|++|++++| .++.+|..+++|++|++|++++|.++.+|
T Consensus         2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            5666666666 56666655666777777777766666554

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.31  E-value=9.6e-08  Score=73.10  Aligned_cols=107  Identities=19%  Similarity=0.334  Sum_probs=86.3

Q ss_pred             cceEEEeecccccccCC----CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEE
Q 017975          163 GVKRISLMENEIQSLPQ----IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLD  238 (363)
Q Consensus       163 ~l~~L~l~~~~~~~l~~----~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~  238 (363)
                      .+..++++.+.+-.++.    +....+|...++++|.+...|+.+...++.+..|++++| .+..+|..+..++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence            34456666665554432    456677888899999999999887777788999999999 7888999999999999999


Q ss_pred             ccCCCCCccchhhhccc-hhccccCcCccCcCC
Q 017975          239 LSSTKVRGLPQELKALV-LRMLHCGSNHWPIAE  270 (363)
Q Consensus       239 l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp  270 (363)
                      ++.|.+...|.-+..|. +..|+...|.+..+|
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCCccccCc
Confidence            99999999998888888 888888888877776

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.17  E-value=3.6e-07  Score=86.43  Aligned_cols=124  Identities=27%  Similarity=0.341  Sum_probs=97.4

Q ss_pred             eeEEecCCCCCCCcc-ccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975          143 KFLVRAGVGLTDAPK-IEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL  221 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~  221 (363)
                      ..+...+..+..+.. +..+.++++|++++|.|+.+..+..++.|+.|++.+|.++.+..  +..+..|+.+++++| .+
T Consensus        98 ~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n-~i  174 (414)
T KOG0531|consen   98 EALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYN-RI  174 (414)
T ss_pred             eeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC--CccchhhhcccCCcc-hh
Confidence            345566677777777 78899999999999999999999999999999999999998866  677999999999999 77


Q ss_pred             cccCcc-ccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCC
Q 017975          222 TELPVG-ISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAE  270 (363)
Q Consensus       222 ~~lp~~-i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp  270 (363)
                      ..++.. ...+.+|+.+.+.+|.+..+. .+..+. +..+++..|.+..+-
T Consensus       175 ~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  175 VDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLE  224 (414)
T ss_pred             hhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceecc
Confidence            777643 588899999999999887653 222222 333345566655443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.08  E-value=6e-06  Score=51.03  Aligned_cols=40  Identities=33%  Similarity=0.542  Sum_probs=29.8

Q ss_pred             CCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC
Q 017975          184 PRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP  225 (363)
Q Consensus       184 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp  225 (363)
                      ++|++|++++|.++.+++. ++++++|++|++++| .++.+|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccCCCCcccCch-HhCCCCCCEEEecCC-CCCCCc
Confidence            4688888888888888776 788888888888888 566554

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.98  E-value=2.5e-05  Score=72.06  Aligned_cols=83  Identities=19%  Similarity=0.304  Sum_probs=63.9

Q ss_pred             CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCC-CCCccchhhhccchhc
Q 017975          180 IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSST-KVRGLPQELKALVLRM  258 (363)
Q Consensus       180 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~-~l~~lP~~i~~L~L~~  258 (363)
                      +..+++++.|++++|.++.+|.  +  ..+|+.|.+++|..++.+|..+.  .+|++|++++| .+..+|.++..|.+..
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~  121 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRSLEIKG  121 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccceEEeCC
Confidence            4456889999999999888872  2  34799999999989999997664  68999999999 8888998876665432


Q ss_pred             cccCcCccCcCC
Q 017975          259 LHCGSNHWPIAE  270 (363)
Q Consensus       259 L~~~~~~l~~lp  270 (363)
                        ..++.+..+|
T Consensus       122 --n~~~~L~~LP  131 (426)
T PRK15386        122 --SATDSIKNVP  131 (426)
T ss_pred             --CCCcccccCc
Confidence              3334456666

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=8.6e-06  Score=70.59  Aligned_cols=68  Identities=15%  Similarity=0.099  Sum_probs=35.2

Q ss_pred             hccccccceEEEEeccCcccccccCCCchhhhhheeeecccCC-CCcCCcccccccccceeeeccCCCCCccc
Q 017975          286 IHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNS-LPLNLLHLANMEHLQLFSIWDSNLEDWNV  357 (363)
Q Consensus       286 l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~c~~l~~~~  357 (363)
                      .+++..+-+..+.+...........++.+    -.|++..++. --..+..+..++.|..|.+++++.++.+-
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~----~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSL----SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcc----hhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence            34455555555544433333333444444    3455555442 12224456677777777777777765543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.93  E-value=3.4e-07  Score=87.81  Aligned_cols=130  Identities=22%  Similarity=0.251  Sum_probs=90.3

Q ss_pred             cccccceEEEeecccccccC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEE
Q 017975          159 EEWEGVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHL  237 (363)
Q Consensus       159 ~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L  237 (363)
                      ..|..+...+.++|.+..+. .+.-++.|+.|+|++|++++..  .+..+++|+.|||+.| .+..+|.-=..--+|+.|
T Consensus       161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L  237 (1096)
T KOG1859|consen  161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLL  237 (1096)
T ss_pred             hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhhheee
Confidence            35667777777777776654 3556677888888888887765  3778888888888888 677777422222248888


Q ss_pred             EccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEec
Q 017975          238 DLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLR  300 (363)
Q Consensus       238 ~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~  300 (363)
                      ++++|.++.+ .++.+|. |+.||++.|-+....        .-..+..|..|+.|.+.+|.+.
T Consensus       238 ~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hs--------eL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  238 NLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHS--------ELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eecccHHHhh-hhHHhhhhhhccchhHhhhhcch--------hhhHHHHHHHHHHHhhcCCccc
Confidence            8888887777 4777787 888888887665432        1134566777777777777654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.80  E-value=3.6e-06  Score=64.62  Aligned_cols=88  Identities=31%  Similarity=0.460  Sum_probs=78.8

Q ss_pred             ccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 017975          162 EGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDL  239 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l  239 (363)
                      .++...++++|.++++|.  ...++.+.+|++++|.+.++|.. +..++.||.|+++.| .+...|..|..|.+|-+|+.
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcC
Confidence            467788999999999885  24667899999999999999998 999999999999999 78888999999999999999


Q ss_pred             cCCCCCccchhh
Q 017975          240 SSTKVRGLPQEL  251 (363)
Q Consensus       240 ~~~~l~~lP~~i  251 (363)
                      .++.+..+|-.+
T Consensus       131 ~~na~~eid~dl  142 (177)
T KOG4579|consen  131 PENARAEIDVDL  142 (177)
T ss_pred             CCCccccCcHHH
Confidence            999999998763

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.73  E-value=6.7e-05  Score=61.59  Aligned_cols=85  Identities=33%  Similarity=0.444  Sum_probs=68.8

Q ss_pred             cceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC--ccccCCCCCCEEEcc
Q 017975          163 GVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP--VGISSLVSLHHLDLS  240 (363)
Q Consensus       163 ~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~  240 (363)
                      ....++++.|++..++.+..++.|.+|.+.+|+++.+.+..-.-+++|..|.|.+| .+.++-  ..+..++.|++|.+-
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence            56678999999998888999999999999999999988875556778999999998 666553  246677889999988


Q ss_pred             CCCCCccc
Q 017975          241 STKVRGLP  248 (363)
Q Consensus       241 ~~~l~~lP  248 (363)
                      +|.+..-+
T Consensus       122 ~Npv~~k~  129 (233)
T KOG1644|consen  122 GNPVEHKK  129 (233)
T ss_pred             CCchhccc
Confidence            88776543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=7.9e-06  Score=70.82  Aligned_cols=183  Identities=25%  Similarity=0.291  Sum_probs=110.5

Q ss_pred             ccceEEEeecccccccCC----CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC-ccccCccccCCCCCCE
Q 017975          162 EGVKRISLMENEIQSLPQ----IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY-LTELPVGISSLVSLHH  236 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~~----~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~-~~~lp~~i~~L~~L~~  236 (363)
                      +.++.+++.+|.+....+    +.+++.|++|+++.|.+.......--...+|++|.|.|+.. .+..-..+..++.++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            567888888888877654    35788899999998877654433113567888888888732 2234456677777888


Q ss_pred             EEccCCCCCcc----------chhhhccc----hhccccCcCcc-CcCCC--------CCCCCCCcccchhhhccccccc
Q 017975          237 LDLSSTKVRGL----------PQELKALV----LRMLHCGSNHW-PIAEE--------GNVLSDDAESLMKEIHCLEQLN  293 (363)
Q Consensus       237 L~l~~~~l~~l----------P~~i~~L~----L~~L~~~~~~l-~~lp~--------~~l~~l~~~~~l~~l~~L~~L~  293 (363)
                      |.++.|+++.+          ...+..+.    +..+...-+++ +.+|.        +-+++.........++.+.-|.
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln  230 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN  230 (418)
T ss_pred             hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence            88877755432          11222221    11111222222 23343        2233444445556667777888


Q ss_pred             eEEEEeccCcccccccCCCchhhhhheeeecccCCCCcC------Ccccccccccceeeec
Q 017975          294 LIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLN------LLHLANMEHLQLFSIW  348 (363)
Q Consensus       294 l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~------~~~l~~l~~L~~L~l~  348 (363)
                      +..+++.+....+.+..++.+    .-|.+++++.....      .--+..|++++.|+=+
T Consensus       231 L~~~~idswasvD~Ln~f~~l----~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  231 LGANNIDSWASVDALNGFPQL----VDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             hcccccccHHHHHHHcCCchh----heeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            888888777777777777777    77777776531110      1125678888887644

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.51  E-value=7.2e-06  Score=72.49  Aligned_cols=185  Identities=18%  Similarity=0.201  Sum_probs=105.6

Q ss_pred             ccceEEEeecccccc--cCC----CCCCCCccEEEeccCCccccchHH-------------hcCCCCCCEEEcccCCCcc
Q 017975          162 EGVKRISLMENEIQS--LPQ----IPTCPRLQTLLLEYNHIEEITESF-------------FQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~--l~~----~~~l~~L~~L~l~~~~l~~~~~~~-------------~~~l~~L~~L~L~~~~~~~  222 (363)
                      ++++.++++.|.+..  ++.    +..+..|+.|.+.+|.+...-...             ...-+.||++...+| .+.
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rle  170 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLE  170 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccc
Confidence            467777777776542  111    345667777777777543221111             334556777777777 333


Q ss_pred             cc-----CccccCCCCCCEEEccCCCCCc-----cchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccc
Q 017975          223 EL-----PVGISSLVSLHHLDLSSTKVRG-----LPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQ  291 (363)
Q Consensus       223 ~l-----p~~i~~L~~L~~L~l~~~~l~~-----lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~  291 (363)
                      .-     -..+...+.|+.+.+..|.|..     +-..+...+ |+.|++..|.++.--     +......+..+++|+.
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg-----s~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG-----SVALAKALSSWPHLRE  245 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH-----HHHHHHHhcccchhee
Confidence            22     2345556677777777776542     222334444 666666666543211     0022244556778888


Q ss_pred             cceEEEEeccCcccccccCCCchhhhhheeeecccCCC----CcCCcccccccccceeeeccCCC
Q 017975          292 LNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSL----PLNLLHLANMEHLQLFSIWDSNL  352 (363)
Q Consensus       292 L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~c~~  352 (363)
                      |++.+|.+...........+......|+.|.+.+|...    .....++...+.|..|+|++|.+
T Consensus       246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            88888887665332222223233334488888887631    11223466688899999999987

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.40  E-value=3e-05  Score=77.14  Aligned_cols=87  Identities=22%  Similarity=0.252  Sum_probs=47.6

Q ss_pred             cCCCCCCEEEcccCCCcc-ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccc
Q 017975          205 QSLPSLRVLNLSVNHYLT-ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESL  282 (363)
Q Consensus       205 ~~l~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~  282 (363)
                      ..+|.|+.|.+.+-.... ++-.-..++++|..||+|+|+++.+ .++++|+ |+.|.+.+=.+..-.        .-..
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~--------~l~~  215 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQ--------DLID  215 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchh--------hHHH
Confidence            345666666666642211 1222344566777777777777766 6666776 666555443322211        1124


Q ss_pred             hhhhccccccceEEEEec
Q 017975          283 MKEIHCLEQLNLIALSLR  300 (363)
Q Consensus       283 l~~l~~L~~L~l~~~~~~  300 (363)
                      +.+|++|+.|+++.-...
T Consensus       216 LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  216 LFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             HhcccCCCeeeccccccc
Confidence            556777777777665543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.27  E-value=1.7e-05  Score=70.16  Aligned_cols=192  Identities=18%  Similarity=0.214  Sum_probs=97.3

Q ss_pred             cccccceEEEeecccccc-----c-CCCCCCCCccEEEeccCC----ccccchH------HhcCCCCCCEEEcccCCCcc
Q 017975          159 EEWEGVKRISLMENEIQS-----L-PQIPTCPRLQTLLLEYNH----IEEITES------FFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       159 ~~~~~l~~L~l~~~~~~~-----l-~~~~~l~~L~~L~l~~~~----l~~~~~~------~~~~l~~L~~L~L~~~~~~~  222 (363)
                      ..+..+..+++++|.+..     + +.+.+.++|+..+++.-.    ...+|+.      .+...++|++||||.|..-.
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            344567777777776532     1 123444456665555431    1112211      13344566666666664332


Q ss_pred             ccCc----cccCCCCCCEEEccCCCCCccchhh-----h---------ccc-hhccccCcCccCcCCC----------CC
Q 017975          223 ELPV----GISSLVSLHHLDLSSTKVRGLPQEL-----K---------ALV-LRMLHCGSNHWPIAEE----------GN  273 (363)
Q Consensus       223 ~lp~----~i~~L~~L~~L~l~~~~l~~lP~~i-----~---------~L~-L~~L~~~~~~l~~lp~----------~~  273 (363)
                      .-+.    -|..+..|++|.|.+|.+...-...     .         .-. |+.+..+.|++..-+.          ..
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence            2222    2334556666666666554311110     0         001 5665566666554432          01


Q ss_pred             CCCC-------------CcccchhhhccccccceEEEEeccCcc---cccccCCCchhhhhheeeecccCCCCc----CC
Q 017975          274 VLSD-------------DAESLMKEIHCLEQLNLIALSLRGSRG---VENFLKFPKLQNITQALHIKDCNSLPL----NL  333 (363)
Q Consensus       274 l~~l-------------~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~l~~~L~~L~l~~~~~~~~----~~  333 (363)
                      +...             -....+..+++|+.|++.+|.++....   ...+.+++++    +.|++++|..-..    ..
T Consensus       187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L----~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL----RELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh----eeecccccccccccHHHHH
Confidence            1100             122345678888888888888765422   1233444444    8888888873111    11


Q ss_pred             ccc-ccccccceeeeccCCCCC
Q 017975          334 LHL-ANMEHLQLFSIWDSNLED  354 (363)
Q Consensus       334 ~~l-~~l~~L~~L~l~~c~~l~  354 (363)
                      ..+ ...++|++|.+.+|.+..
T Consensus       263 ~al~~~~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNEITR  284 (382)
T ss_pred             HHHhccCCCCceeccCcchhHH
Confidence            122 236788999988887653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.90  E-value=0.00062  Score=67.97  Aligned_cols=81  Identities=17%  Similarity=0.306  Sum_probs=43.2

Q ss_pred             cccceEEEeecccccc--cC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc--CccccCCCCCC
Q 017975          161 WEGVKRISLMENEIQS--LP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL--PVGISSLVSLH  235 (363)
Q Consensus       161 ~~~l~~L~l~~~~~~~--l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l--p~~i~~L~~L~  235 (363)
                      +|.|++|.+.+-.+..  +. -..++++|+.||+++++++.+. + ++++++|++|.+.+- .+..-  -..+.+|++|+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~-G-IS~LknLq~L~mrnL-e~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS-G-ISRLKNLQVLSMRNL-EFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH-H-HhccccHHHHhccCC-CCCchhhHHHHhcccCCC
Confidence            4566666666543322  11 1345666666666666666652 2 566666666665554 22211  12455666666


Q ss_pred             EEEccCCCC
Q 017975          236 HLDLSSTKV  244 (363)
Q Consensus       236 ~L~l~~~~l  244 (363)
                      .||+|....
T Consensus       224 vLDIS~~~~  232 (699)
T KOG3665|consen  224 VLDISRDKN  232 (699)
T ss_pred             eeecccccc
Confidence            666665533

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.88  E-value=0.00084  Score=55.28  Aligned_cols=129  Identities=18%  Similarity=0.254  Sum_probs=78.3

Q ss_pred             ceEEEeecccccccCCCC-CCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccC-CCCCCEEEccC
Q 017975          164 VKRISLMENEIQSLPQIP-TCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISS-LVSLHHLDLSS  241 (363)
Q Consensus       164 l~~L~l~~~~~~~l~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~-L~~L~~L~l~~  241 (363)
                      -+.+++.+..+..+...+ ...+...+|+++|.+..++.  |..++.|.+|.+.+| .++.+-..+.. +++|+.|.+.+
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecC
Confidence            344555555443332221 23456788899998877765  788889999999998 77777666665 45699999999


Q ss_pred             CCCCccch--hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975          242 TKVRGLPQ--ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG  301 (363)
Q Consensus       242 ~~l~~lP~--~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~  301 (363)
                      |+|.++-.  .+..++ |+.|.+-.|.++.-..      .-.-.+..+++|+.|+........
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~------YR~yvl~klp~l~~LDF~kVt~~E  154 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKN------YRLYVLYKLPSLRTLDFQKVTRKE  154 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccC------ceeEEEEecCcceEeehhhhhHHH
Confidence            98887521  112222 5555555555443321      111235556677777766655443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.81  E-value=0.0004  Score=35.76  Aligned_cols=19  Identities=32%  Similarity=0.592  Sum_probs=9.0

Q ss_pred             CCEEEccCCCCCccchhhh
Q 017975          234 LHHLDLSSTKVRGLPQELK  252 (363)
Q Consensus       234 L~~L~l~~~~l~~lP~~i~  252 (363)
                      |++|++++|+++.+|++++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4445555554444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.62  E-value=0.0011  Score=56.66  Aligned_cols=85  Identities=29%  Similarity=0.452  Sum_probs=59.1

Q ss_pred             ccccceEEEeecccccccCCCCCCCCccEEEeccC--Cccc-cchHHhcCCCCCCEEEcccCCCcc---ccCccccCCCC
Q 017975          160 EWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYN--HIEE-ITESFFQSLPSLRVLNLSVNHYLT---ELPVGISSLVS  233 (363)
Q Consensus       160 ~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~--~l~~-~~~~~~~~l~~L~~L~L~~~~~~~---~lp~~i~~L~~  233 (363)
                      .+..+..+++.+..++.+..+..+++|+.|.++.|  ++.. ++.- ..++++|++|++++| .+.   +++ .+..+.+
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~lstl~-pl~~l~n  117 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKDLSTLR-PLKELEN  117 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-ccccccccc-hhhhhcc
Confidence            34567777777777777777888889999999888  4432 3332 456688999999988 443   222 4556677


Q ss_pred             CCEEEccCCCCCcc
Q 017975          234 LHHLDLSSTKVRGL  247 (363)
Q Consensus       234 L~~L~l~~~~l~~l  247 (363)
                      |..|++..|..+.+
T Consensus       118 L~~Ldl~n~~~~~l  131 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNL  131 (260)
T ss_pred             hhhhhcccCCcccc
Confidence            77888888766554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.46  E-value=0.0017  Score=55.64  Aligned_cols=59  Identities=31%  Similarity=0.371  Sum_probs=26.6

Q ss_pred             CccEEEeccCCccccchHHhcCCCCCCEEEcccC--CCccccCccccCCCCCCEEEccCCCCC
Q 017975          185 RLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN--HYLTELPVGISSLVSLHHLDLSSTKVR  245 (363)
Q Consensus       185 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~--~~~~~lp~~i~~L~~L~~L~l~~~~l~  245 (363)
                      .|+.|.+.+..++.+-.  +-.|++|++|.++.|  +....++-....+++|++|++++|+++
T Consensus        44 ~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             chhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            33444444444333322  334455555555555  333333333444455555555555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.42  E-value=0.00042  Score=59.81  Aligned_cols=95  Identities=36%  Similarity=0.452  Sum_probs=75.3

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccch-HHhcCCCCCCEEEcccCCCcc
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITE-SFFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~L~~~~~~~  222 (363)
                      .+.+-|.++.++.-...++.+..|+++-|.|+.+..+..+++|+.|+|..|.|..+.. .-+.++++||.|-|..|....
T Consensus        23 KLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   23 KLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG  102 (388)
T ss_pred             hhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence            3555677788888788899999999999999999999999999999999998877643 227899999999998885444


Q ss_pred             ccCc-----cccCCCCCCEEE
Q 017975          223 ELPV-----GISSLVSLHHLD  238 (363)
Q Consensus       223 ~lp~-----~i~~L~~L~~L~  238 (363)
                      +-+.     .+.-|++|+.||
T Consensus       103 ~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  103 EAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccchhHHHHHHHHcccchhcc
Confidence            3332     244577787776

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.35  E-value=0.0017  Score=33.36  Aligned_cols=21  Identities=43%  Similarity=0.577  Sum_probs=13.3

Q ss_pred             CCCEEEcccCCCccccCccccC
Q 017975          209 SLRVLNLSVNHYLTELPVGISS  230 (363)
Q Consensus       209 ~L~~L~L~~~~~~~~lp~~i~~  230 (363)
                      +|++||+++| .++.+|+++++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTTT
T ss_pred             CccEEECCCC-cCEeCChhhcC
Confidence            4667777777 56666666554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.29  E-value=0.00017  Score=62.85  Aligned_cols=160  Identities=18%  Similarity=0.084  Sum_probs=98.6

Q ss_pred             CCccEEEeccCCccc-cchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCC-CCCccch--hhhccc-hhc
Q 017975          184 PRLQTLLLEYNHIEE-ITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSST-KVRGLPQ--ELKALV-LRM  258 (363)
Q Consensus       184 ~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~-~l~~lP~--~i~~L~-L~~  258 (363)
                      ..|+.+|++...++. .....++.+.+|+.|.+.|+..-..+-..|.+-.+|+.|+++.| .+++...  -+.+++ |..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            358899999987763 23344788889999999999655556667888889999999998 6665322  234444 666


Q ss_pred             cccCcCccCcCCCCCCCCCCcccchhh-hccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcC-Cccc
Q 017975          259 LHCGSNHWPIAEEGNVLSDDAESLMKE-IHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLN-LLHL  336 (363)
Q Consensus       259 L~~~~~~l~~lp~~~l~~l~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~-~~~l  336 (363)
                      |+++...+..--        ....+.. -++|+.|+++++.-.-..  ..+..+..--+.+..|++++|..+... ...+
T Consensus       265 LNlsWc~l~~~~--------Vtv~V~hise~l~~LNlsG~rrnl~~--sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~  334 (419)
T KOG2120|consen  265 LNLSWCFLFTEK--------VTVAVAHISETLTQLNLSGYRRNLQK--SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  334 (419)
T ss_pred             cCchHhhccchh--------hhHHHhhhchhhhhhhhhhhHhhhhh--hHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence            666554432100        0011111 136777777765422111  111222111122388999998864442 3447


Q ss_pred             ccccccceeeeccCCCC
Q 017975          337 ANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       337 ~~l~~L~~L~l~~c~~l  353 (363)
                      .+++.|++|.++.|...
T Consensus       335 ~kf~~L~~lSlsRCY~i  351 (419)
T KOG2120|consen  335 FKFNYLQHLSLSRCYDI  351 (419)
T ss_pred             HhcchheeeehhhhcCC
Confidence            78999999999999753

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.17  E-value=0.00068  Score=58.37  Aligned_cols=188  Identities=20%  Similarity=0.258  Sum_probs=104.3

Q ss_pred             ccccceEEEeecccccc-----cC-CCCCCCCccEEEeccCCcc----ccch------HHhcCCCCCCEEEcccCCCccc
Q 017975          160 EWEGVKRISLMENEIQS-----LP-QIPTCPRLQTLLLEYNHIE----EITE------SFFQSLPSLRVLNLSVNHYLTE  223 (363)
Q Consensus       160 ~~~~l~~L~l~~~~~~~-----l~-~~~~l~~L~~L~l~~~~l~----~~~~------~~~~~l~~L~~L~L~~~~~~~~  223 (363)
                      .+..+..+++++|.+..     +. .+.+-++|++.+++.-...    .++.      ..+-++++|+..+||.|....+
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            35678899999997754     11 2456778888887754211    1111      1256789999999999976666


Q ss_pred             cCcc----ccCCCCCCEEEccCCCCCccc-hhhh----cc---------c-hhccccCcCccCcCCCCCCCCCCcccchh
Q 017975          224 LPVG----ISSLVSLHHLDLSSTKVRGLP-QELK----AL---------V-LRMLHCGSNHWPIAEEGNVLSDDAESLMK  284 (363)
Q Consensus       224 lp~~----i~~L~~L~~L~l~~~~l~~lP-~~i~----~L---------~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~  284 (363)
                      .|+.    |+.-+.|.+|.+++|.+-.+. ..|+    .|         + |+....+.|++...|.    . .....+.
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~----~-~~a~~l~  182 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK----E-LSAALLE  182 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH----H-HHHHHHH
Confidence            6654    556778999999998765432 1222    22         1 6665566666654441    0 0111222


Q ss_pred             hhccccccceEEEEeccCcccc--cccCCCchhhhhheeeecccCCC--Cc--CCcccccccccceeeeccCCCCC
Q 017975          285 EIHCLEQLNLIALSLRGSRGVE--NFLKFPKLQNITQALHIKDCNSL--PL--NLLHLANMEHLQLFSIWDSNLED  354 (363)
Q Consensus       285 ~l~~L~~L~l~~~~~~~~~~~~--~l~~l~~l~~~L~~L~l~~~~~~--~~--~~~~l~~l~~L~~L~l~~c~~l~  354 (363)
                      .=..|+.+.+..|.+.... ..  .+.++.. ...|+.|++.+|...  .+  .-..+..-+.|+.|.+..|-+..
T Consensus       183 sh~~lk~vki~qNgIrpeg-v~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         183 SHENLKEVKIQQNGIRPEG-VTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             hhcCceeEEeeecCcCcch-hHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence            2235666666666553220 00  0111111 122488888876521  00  01123334557888888887654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.99  E-value=0.0047  Score=29.46  Aligned_cols=16  Identities=44%  Similarity=0.787  Sum_probs=7.1

Q ss_pred             CCCEEEccCCCCCccc
Q 017975          233 SLHHLDLSSTKVRGLP  248 (363)
Q Consensus       233 ~L~~L~l~~~~l~~lP  248 (363)
                      +|++|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666655554

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.27  E-value=0.0014  Score=56.63  Aligned_cols=89  Identities=22%  Similarity=0.201  Sum_probs=62.4

Q ss_pred             cCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccch
Q 017975          205 QSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLM  283 (363)
Q Consensus       205 ~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l  283 (363)
                      +.+.+.+.|+.-|| .+..+. -..+|+.|+.|.|+-|+|+.+- .+...+ |+.|++.-|.+.++.        ...-+
T Consensus        16 sdl~~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sld--------EL~YL   84 (388)
T KOG2123|consen   16 SDLENVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLD--------ELEYL   84 (388)
T ss_pred             hHHHHhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHH--------HHHHH
Confidence            34567778888888 676654 5568889999999999988873 444555 777777777765543        22456


Q ss_pred             hhhccccccceEEEEeccCcc
Q 017975          284 KEIHCLEQLNLIALSLRGSRG  304 (363)
Q Consensus       284 ~~l~~L~~L~l~~~~~~~~~~  304 (363)
                      .++++|+.|.+..|...+..+
T Consensus        85 knlpsLr~LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   85 KNLPSLRTLWLDENPCCGEAG  105 (388)
T ss_pred             hcCchhhhHhhccCCcccccc
Confidence            677788888888777665543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.74  E-value=0.028  Score=30.00  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=16.2

Q ss_pred             CCCCCEEEccCCCCCccchhhh
Q 017975          231 LVSLHHLDLSSTKVRGLPQELK  252 (363)
Q Consensus       231 L~~L~~L~l~~~~l~~lP~~i~  252 (363)
                      |++|++|+|++|.++.+|....
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4577888888888888877643

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.74  E-value=0.028  Score=30.00  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=16.2

Q ss_pred             CCCCCEEEccCCCCCccchhhh
Q 017975          231 LVSLHHLDLSSTKVRGLPQELK  252 (363)
Q Consensus       231 L~~L~~L~l~~~~l~~lP~~i~  252 (363)
                      |++|++|+|++|.++.+|....
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4577888888888888877643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.73  E-value=0.0085  Score=51.85  Aligned_cols=141  Identities=21%  Similarity=0.203  Sum_probs=87.1

Q ss_pred             CCCCCCCCccEEEeccCCccc-cc---hHHhcCCCCCCEEEcccCCCccccC--------------ccccCCCCCCEEEc
Q 017975          178 PQIPTCPRLQTLLLEYNHIEE-IT---ESFFQSLPSLRVLNLSVNHYLTELP--------------VGISSLVSLHHLDL  239 (363)
Q Consensus       178 ~~~~~l~~L~~L~l~~~~l~~-~~---~~~~~~l~~L~~L~L~~~~~~~~lp--------------~~i~~L~~L~~L~l  239 (363)
                      +.+.+|++|+..+++.|.+.. .|   .+.+++-..|..|.+++| .+..+.              +...+-+.|++...
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            346789999999999997642 22   245788999999999999 665432              12345678999999


Q ss_pred             cCCCCCccchhhhccc------hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcc---cccccC
Q 017975          240 SSTKVRGLPQELKALV------LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRG---VENFLK  310 (363)
Q Consensus       240 ~~~~l~~lP~~i~~L~------L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~l~~  310 (363)
                      ..|.+..-|.......      |..+.+..|.++.=-   ... -.-..+..+++|+.|++.+|.++....   ...+..
T Consensus       165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpeg---v~~-L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~  240 (388)
T COG5238         165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEG---VTM-LAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE  240 (388)
T ss_pred             ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcch---hHH-HHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence            9998887776544332      444444455542100   000 001234556788888888887764321   112233


Q ss_pred             CCchhhhhheeeecccC
Q 017975          311 FPKLQNITQALHIKDCN  327 (363)
Q Consensus       311 l~~l~~~L~~L~l~~~~  327 (363)
                      .+.    |+.|.+.+|-
T Consensus       241 W~~----lrEL~lnDCl  253 (388)
T COG5238         241 WNL----LRELRLNDCL  253 (388)
T ss_pred             cch----hhhccccchh
Confidence            333    4777877775

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.47  E-value=0.028  Score=26.74  Aligned_cols=16  Identities=63%  Similarity=0.835  Sum_probs=7.7

Q ss_pred             CCCEEEcccCCCccccC
Q 017975          209 SLRVLNLSVNHYLTELP  225 (363)
Q Consensus       209 ~L~~L~L~~~~~~~~lp  225 (363)
                      +|+.|++++| .++++|
T Consensus         2 ~L~~L~l~~n-~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNN-RLTSLP   17 (17)
T ss_dssp             T-SEEEETSS---SSE-
T ss_pred             ccCEEECCCC-CCCCCc
Confidence            5666666666 355554

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.27  E-value=0.0019  Score=54.50  Aligned_cols=85  Identities=24%  Similarity=0.208  Sum_probs=53.5

Q ss_pred             hcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccc
Q 017975          204 FQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESL  282 (363)
Q Consensus       204 ~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~  282 (363)
                      +..++.-.+||++.+ .+..+-..++-++.|..|+++.+.+..+|+..+.+. +..++++.|..+..|          .+
T Consensus        38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p----------~s  106 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQP----------KS  106 (326)
T ss_pred             hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCC----------cc
Confidence            455566666666666 455555566666666667777666666777666666 666666666666665          45


Q ss_pred             hhhhccccccceEEEEe
Q 017975          283 MKEIHCLEQLNLIALSL  299 (363)
Q Consensus       283 l~~l~~L~~L~l~~~~~  299 (363)
                      .+..+.++.++.-++.+
T Consensus       107 ~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  107 QKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             ccccCCcchhhhccCcc
Confidence            55566666666555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.48  E-value=0.26  Score=37.94  Aligned_cols=83  Identities=18%  Similarity=0.383  Sum_probs=42.1

Q ss_pred             ccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCc-cccCCCCCCEEE
Q 017975          162 EGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLD  238 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~  238 (363)
                      .+++.+.+.. .++.++  .+..+++|+.+.+..+ +..+....|.++..|+.+.+..+  +..++. .+..+.+|+.+.
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEE
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccccccc
Confidence            4566666653 455554  3566667777777664 66666666777777777777643  333333 345577777777


Q ss_pred             ccCCCCCccch
Q 017975          239 LSSTKVRGLPQ  249 (363)
Q Consensus       239 l~~~~l~~lP~  249 (363)
                      +..+ +..++.
T Consensus        88 ~~~~-~~~i~~   97 (129)
T PF13306_consen   88 IPSN-ITEIGS   97 (129)
T ss_dssp             ETTT--BEEHT
T ss_pred             cCcc-ccEEch
Confidence            7554 555543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.97  E-value=0.0028  Score=53.47  Aligned_cols=87  Identities=16%  Similarity=0.123  Sum_probs=71.8

Q ss_pred             cccccccceEEEeecccccccC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCC
Q 017975          157 KIEEWEGVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLH  235 (363)
Q Consensus       157 ~~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~  235 (363)
                      ++..+..+..|+++.|.+..+. .++.+..+..|+++.|.+..+|.+ ++.+..++.+++..| .....|.+.+.+++++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKN-NHSQQPKSQKKEPHPK  114 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhcc-chhhCCccccccCCcc
Confidence            4445567888888888766654 356677788899999999988888 888889999999888 8899999999999999


Q ss_pred             EEEccCCCCC
Q 017975          236 HLDLSSTKVR  245 (363)
Q Consensus       236 ~L~l~~~~l~  245 (363)
                      ++++.+|.+.
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            9999998754

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.54  E-value=0.17  Score=26.89  Aligned_cols=20  Identities=25%  Similarity=0.414  Sum_probs=10.5

Q ss_pred             CCccEEEeccCCccccchHH
Q 017975          184 PRLQTLLLEYNHIEEITESF  203 (363)
Q Consensus       184 ~~L~~L~l~~~~l~~~~~~~  203 (363)
                      ++|++|++.+|.++.+|+..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            34555555555555555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.54  E-value=0.17  Score=26.89  Aligned_cols=20  Identities=25%  Similarity=0.414  Sum_probs=10.5

Q ss_pred             CCccEEEeccCCccccchHH
Q 017975          184 PRLQTLLLEYNHIEEITESF  203 (363)
Q Consensus       184 ~~L~~L~l~~~~l~~~~~~~  203 (363)
                      ++|++|++.+|.++.+|+..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            34555555555555555543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=91.50  E-value=0.71  Score=48.48  Aligned_cols=117  Identities=17%  Similarity=0.232  Sum_probs=74.4

Q ss_pred             CccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccccccccchHHHHHHHHh-hcCCCCChhhhHHHhHhcCCCCCc
Q 017975            1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKF-SYDSLPNDELRSCLLYCCLFPEDS   79 (363)
Q Consensus         1 Iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~-sy~~L~~~~lk~cfl~~s~Fp~~~   79 (363)
                      |.+.|+|.|+++..++..+.......  ......+....      ...+.+.+.- -++.||+ +.+..+...|+++   
T Consensus       211 l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---  278 (903)
T PRK04841        211 LCDDVEGWATALQLIALSARQNNSSL--HDSARRLAGIN------ASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---  278 (903)
T ss_pred             HHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhcCCC------chhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---
Confidence            35789999999999988775522100  11111111100      1134444333 3789999 8999999999986   


Q ss_pred             ccChHHHHHHHHHhCCccCcCHHHHHHHHHHhhcccC--C--CCceeechhHHHHHHHHh
Q 017975           80 EIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEE--G--GDHVKMHDMIRDMALWIA  135 (363)
Q Consensus        80 ~~~~~~li~~w~a~g~~~~~~~~~~~~~L~~rsli~~--~--~~~~~mhdl~~~~~~~i~  135 (363)
                      .++.+ +..     .......+...+++|.+.+++..  +  ...|+.|++++++.+.-.
T Consensus       279 ~~~~~-l~~-----~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l  332 (903)
T PRK04841        279 SMNDA-LIV-----RVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC  332 (903)
T ss_pred             cCCHH-HHH-----HHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence            34433 222     22333347888999999999753  2  347899999999988654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.09  E-value=0.057  Score=44.76  Aligned_cols=45  Identities=18%  Similarity=0.318  Sum_probs=29.3

Q ss_pred             cccCCCchhhhhheeeecccCCCCc-CCcccccccccceeeeccCC
Q 017975          307 NFLKFPKLQNITQALHIKDCNSLPL-NLLHLANMEHLQLFSIWDSN  351 (363)
Q Consensus       307 ~l~~l~~l~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~c~  351 (363)
                      .+..+.++..+|+.|+|++|..+.. -+..+..+++|+.|.+.+=+
T Consensus       142 ~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  142 CLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             HHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            3444444556668888888876433 35567777888877776533

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=87.90  E-value=0.33  Score=25.86  Aligned_cols=18  Identities=33%  Similarity=0.626  Sum_probs=13.3

Q ss_pred             CCCCEEEccCCCCCccch
Q 017975          232 VSLHHLDLSSTKVRGLPQ  249 (363)
Q Consensus       232 ~~L~~L~l~~~~l~~lP~  249 (363)
                      .+|++|++++|+++.+|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            357777888887777775

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=87.79  E-value=1.6  Score=33.37  Aligned_cols=86  Identities=17%  Similarity=0.441  Sum_probs=49.9

Q ss_pred             ccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCC
Q 017975          158 IEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSL  234 (363)
Q Consensus       158 ~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L  234 (363)
                      +.....++.+.+..+ +..++.  +..+++++.+.+.. .+..++...|..+.+|+.+++..+  +..+ +..+.+. +|
T Consensus        31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l  105 (129)
T PF13306_consen   31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NL  105 (129)
T ss_dssp             TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T-
T ss_pred             ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc--ccEEchhhhcCC-Cc
Confidence            344567888888764 666654  67887899999976 666677777888999999999765  4444 3456665 88


Q ss_pred             CEEEccCCCCCccch
Q 017975          235 HHLDLSSTKVRGLPQ  249 (363)
Q Consensus       235 ~~L~l~~~~l~~lP~  249 (363)
                      +.+.+.. .+..++.
T Consensus       106 ~~i~~~~-~~~~i~~  119 (129)
T PF13306_consen  106 KEINIPS-NITKIEE  119 (129)
T ss_dssp             -EEE-TT-B-SS---
T ss_pred             eEEEECC-CccEECC
Confidence            8888765 4555554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=81.29  E-value=0.37  Score=44.50  Aligned_cols=69  Identities=17%  Similarity=0.210  Sum_probs=42.4

Q ss_pred             hhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCc-CCcccccccccceeeeccCCC
Q 017975          284 KEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPL-NLLHLANMEHLQLFSIWDSNL  352 (363)
Q Consensus       284 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~c~~  352 (363)
                      .+.+.|+.|.++++......+...+.+...-...+..+.+++|+.++. .+..+...++|+.+++.+|..
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            356678888888776544433223333333333447788888876433 345567777888888887764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	363
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-23
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	9e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score =  100 bits (250), Expect = 2e-23
 Identities = 30/223 (13%), Positives = 63/223 (28%), Gaps = 19/223 (8%)

Query: 5   CHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDM----EKKVLSRLKFSYDSL 60
             G P  L    ++   K F +  +   ++ S      E +     K +   L+   + L
Sbjct: 326 SSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVL 385

Query: 61  PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIG-----GWDVLGALVRACLLE 115
             DE RS L +  + P   +I           +   +          D L  L +   L 
Sbjct: 386 S-DEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALL 444

Query: 116 EGGD----HVKMHDMIRDMALWIANEIEEEEKFLVRAGVGLTDAPKIEEWEGVKRISLME 171
            G        K+  +I      + +         +     L            + I    
Sbjct: 445 SGKRMPVLTFKIDHIIHMFLKHVVDAQTIANGISILEQRLLEIGNNNVS-VPERHIPSHF 503

Query: 172 NEIQSLPQIPTCPRLQTLLL----EYNHIEEITESFFQSLPSL 210
            + +        P+     +    ++    ++ + F+ SL + 
Sbjct: 504 QKFRRSSASEMYPKTTEETVIRPEDFPKFMQLHQKFYDSLKNF 546

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 95.7 bits (238), Expect = 9e-22
 Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 16/148 (10%)

Query: 5   CHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEK-----KVLSRLKFSYDS 59
           C G PL +  +G  +     P  W   ++ +     K            +   +  S + 
Sbjct: 317 CKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 374

Query: 60  LPNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGGD 119
           L  ++++       +  +D ++    L + W+ E         D+L   V   LL    +
Sbjct: 375 LR-EDIKDYYTDLSILQKDVKVPTKVLCILWDMETEE----VEDILQEFVNKSLLFCDRN 429

Query: 120 ----HVKMHDMIRDMALWIANEIEEEEK 143
                  +HD+  D          ++  
Sbjct: 430 GKSFRYYLHDLQVDFLTEKNCSQLQDLH 457

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 79.1 bits (194), Expect = 4e-16
 Identities = 41/271 (15%), Positives = 84/271 (30%), Gaps = 62/271 (22%)

Query: 5   CHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSR-LKFSYDSLPND 63
               P  L  + +++  ++    W             ++ +    L+  ++ S + L   
Sbjct: 323 LTTNPRRLSIIAESI--RDGLATWDN-----------WKHVNCDKLTTIIESSLNVLEPA 369

Query: 64  ELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGGD--HV 121
           E R       +FP  + I    L + W      D +    V+  L +  L+E+      +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM---VVVNKLHKYSLVEKQPKESTI 426

Query: 122 KMHDMIRDMALWIANEIEEEEKFLVR------------------------AGVGLTDAPK 157
            +  +  ++ + + NE       +                           G  L +   
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 158 IEEWEGVKRISL----MENEIQ--SLPQIPTCPRLQTL--LLEY-NHIEEITESFFQSLP 208
            E     + + L    +E +I+  S     +   L TL  L  Y  +I +    + +   
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER--- 543

Query: 209 SLRVLNLSVNHYLTELPVGISSLVSLHHLDL 239
                   VN  L  LP    +L+   + DL
Sbjct: 544 -------LVNAILDFLPKIEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 8e-07
 Identities = 65/415 (15%), Positives = 125/415 (30%), Gaps = 153/415 (36%)

Query: 6   HGLP------LALET-----VGQAMAGKEFPEEW------RRAIEIISTSASKFEDMEKK 48
            G+       +AL+      V   M  K F   W           ++         ++  
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 49  VLSRLKFSYD-SLPNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIGGWD--VL 105
             SR   S +  L    +++ L    L     +  +  L+V       L ++   +    
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRR--LLKS--KPYENCLLV-------LLNV--QNAKAW 259

Query: 106 GALVRACLLEEGGDHVKMHDMI--RDMALW-IANEIEEEEKFLVRAGVGLTDAPKIEEWE 162
            A   +C         K+  ++  R   +    +        L    + LT     +E +
Sbjct: 260 NAFNLSC---------KI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTP----DEVK 304

Query: 163 GVKRISLMENEIQSLP-QIPTC-PRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220
            +  +  ++   Q LP ++ T  PR  +++ E       T   ++             H 
Sbjct: 305 SL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-------------HV 350

Query: 221 LTE-LPVGISSLVSLHHLDLSSTKVRGLPQELKAL----------------VLRMLHCGS 263
             + L   I S  SL+ L+         P E + +                +L ++    
Sbjct: 351 NCDKLTTIIES--SLNVLE---------PAEYRKMFDRLSVFPPSAHIPTILLSLI---- 395

Query: 264 NHWPIAEEGNVLSDDAESLMKEIH---CLEQ--------LNLIALSLRGSRGVENFLKFP 312
             W      +V+  D   ++ ++H    +E+        +  I L L+            
Sbjct: 396 --W-----FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK-----------V 437

Query: 313 KLQNITQALHIK-----------DCNSLPLNLL----------HLANMEHLQLFS 346
           KL+N   ALH             D + L    L          HL N+EH +  +
Sbjct: 438 KLENE-YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 6e-05
 Identities = 43/334 (12%), Positives = 92/334 (27%), Gaps = 123/334 (36%)

Query: 43  EDMEKKVLSRLKFSYDSL---PNDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSI 99
           +DM K +LS  K   D +    +    +  L                  +W         
Sbjct: 39  QDMPKSILS--KEEIDHIIMSKDAVSGTLRL------------------FW--------- 69

Query: 100 GGWDVLGALVRACLLEEGGDHVK--MHDMIRDMALWIANEIEEEEKFLVRAGVGLTDAPK 157
                        LL +  + V+  + +++R    ++ + I+ E++            P 
Sbjct: 70  ------------TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-----------QPS 106

Query: 158 IEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSV 217
           +     +++   + N+ Q   +     RLQ          ++ ++         +L L  
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNV-SRLQ-------PYLKLRQA---------LLELRP 149

Query: 218 NHYLTELPVGISSLVSLHHLDLSSTKVRGLP----QELKALVLR--MLHCGSN---HWPI 268
                         V +           G+       +   V     + C  +    W  
Sbjct: 150 AKN-----------VLID----------GVLGSGKTWVALDVCLSYKVQCKMDFKIFW-- 186

Query: 269 AEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNS 328
               N  S +          LE L  +   +       N+       +    L I    +
Sbjct: 187 LNLKNCNSPET--------VLEMLQKLLYQIDP-----NWTSRSD-HSSNIKLRIHSIQA 232

Query: 329 LPLNLLHLANMEH--LQLFSIWDSN-LEDWNVDC 359
               LL     E+  L L ++ ++     +N+ C
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 76.3 bits (187), Expect = 2e-15
 Identities = 53/215 (24%), Positives = 84/215 (39%), Gaps = 31/215 (14%)

Query: 151 GLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSL 210
            +TDA    E   + +I    ++I+S+  I   P +  L L  N + +I      +L +L
Sbjct: 32  SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KPLTNLKNL 89

Query: 211 RVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIA 269
             L L  N  + +L   +  L  L  L L    +  +   L  L  L  L+ G+N     
Sbjct: 90  GWLFLDENK-IKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNK---- 142

Query: 270 EEGNVLSDDAESLMKEIHCLEQL-NLIALSLRGSR--GVENFLKFPKLQNITQAL-HIKD 325
                        + +I  L +L  L  LSL  ++   +       KLQN+  +  HI D
Sbjct: 143 -------------ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD 189

Query: 326 CNSLP----LNLLHLANMEHLQLFSIWDSNLEDWN 356
             +L     L++L L + E L       SNL   N
Sbjct: 190 LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.9 bits (160), Expect = 6e-12
 Identities = 31/194 (15%), Positives = 71/194 (36%), Gaps = 32/194 (16%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
                +   I+ +             L+   + +        L S+  +  + +  +  +
Sbjct: 2   GETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSD-IKSV 58

Query: 225 PVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLM 283
             GI  L ++  L L+  K+  + + L  L  L  L    N                  +
Sbjct: 59  Q-GIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENK-----------------I 99

Query: 284 KEIHCLEQL-NLIALSLRGSR--GVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANME 340
           K++  L+ L  L +LSL  +    +   +  P+L++    L++ + N +  ++  L+ + 
Sbjct: 100 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES----LYLGN-NKI-TDITVLSRLT 153

Query: 341 HLQLFSIWDSNLED 354
            L   S+ D+ + D
Sbjct: 154 KLDTLSLEDNQISD 167

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
             + L  N +     +   P L  + L YN +E+I    F  +  L  L +S N  L  L
Sbjct: 229 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVAL 287

Query: 225 PVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSN 264
            +    + +L  LDLS   +  + +       L  L+   N
Sbjct: 288 NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 328

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPS 209
           LTD   +  + G+  + L  NE++ +         RL+ L +  N +  +   + Q +P+
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPT 296

Query: 210 LRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHW 266
           L+VL+LS NH L  +         L +L L    +  L   L     L+ L    N W
Sbjct: 297 LKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 165 KRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
             + L  N++ SLP+      P+L TL +  N++E I +  FQ+  SL+ L LS N  LT
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LT 178

Query: 223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNH 265
            +   +S + SL H ++S   +  L   +    +  L    N 
Sbjct: 179 HVD--LSLIPSLFHANVSYNLLSTLAIPIA---VEELDASHNS 216

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 11/86 (12%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 167 ISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV 226
           I +   ++    +  T    + +  + + + ++  +   S   + +LNL+    + E+  
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDT 86

Query: 227 GI-SSLVSLHHLDLSSTKVRGLPQEL 251
              +   ++  L +    +R LP  +
Sbjct: 87  YAFAYAHTIQKLYMGFNAIRYLPPHV 112

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 29/189 (15%), Positives = 56/189 (29%), Gaps = 57/189 (30%)

Query: 163 GVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
            +   ++  N + +L        ++ L   +N I  +       L    +L L  N+ LT
Sbjct: 187 SLFHANVSYNLLSTLA---IPIAVEELDASHNSINVVRGPVNVEL---TILKLQHNN-LT 239

Query: 223 ELPVGISSLVSLHHLDLSSTKVRGLPQE-------LKALVLRMLHCGSNHWPIAEEGNVL 275
           +    + +   L  +DLS  ++  +          L+ L +                N L
Sbjct: 240 DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS--------------NNRL 284

Query: 276 SDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLH 335
                +L      +  L ++ LS        N L                   +  N   
Sbjct: 285 V----ALNLYGQPIPTLKVLDLS-------HNHLL-----------------HVERNQPQ 316

Query: 336 LANMEHLQL 344
              +E+L L
Sbjct: 317 FDRLENLYL 325

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 165 KRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH---- 219
           K + L  N +  + +  P   RL+ L L++N I  +      +  +L+ L LS N     
Sbjct: 298 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 354

Query: 220 YLTELPVGISSLVSLHHLDLS 240
            L  L   ++   ++   D  
Sbjct: 355 SLRALFRNVARP-AVDDADQH 374

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.0 bits (179), Expect = 3e-14
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
             +  + N+++ L    T  +L  L L+YN IEEI E F      +  L  S N  L  +
Sbjct: 576 GLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYI 634

Query: 225 P--VGISSLVSLHHLDLSSTKVRGLPQEL 251
           P      S+  +  +D S  K+    + +
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 9e-11
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 11/101 (10%)

Query: 176 SLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLH 235
                      +    +Y    E  E  + +L  L  + L     +T+LP  +  L  L 
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 236 HLDLSSTKVRGLPQELKALV-----------LRMLHCGSNH 265
            L+++  +     Q                 +++ + G N+
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 165 KRISLMENEIQSLP---QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNL------ 215
             I L  N++ SL    +  T P L  + + YN               L+   +      
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN-SSQLKAFGIRHQRDA 789

Query: 216 SVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQEL 251
             N  L + P GI++  SL  L + S  +R + ++L
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 21/192 (10%), Positives = 51/192 (26%), Gaps = 16/192 (8%)

Query: 164 VKRISLMENEIQSL--PQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
           V  +SL     +      I     L+ L    +        F     +  +     +   
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 222 TEL-PVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDAE 280
                + +     L+  DL    +   P+         +        I    N ++    
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ--IGNLTNRIT---- 438

Query: 281 SLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANME 340
            + K I  L +L +I  +        +   +  +    +  +           L  +N++
Sbjct: 439 FISKAIQRLTKLQIIYFA-------NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491

Query: 341 HLQLFSIWDSNL 352
            L    +++   
Sbjct: 492 DLTDVELYNCPN 503

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 19/160 (11%), Positives = 41/160 (25%), Gaps = 18/160 (11%)

Query: 192 EYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQE- 250
           E +   +       +   +  L+L+       +P  I  L  L  L   +       +  
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366

Query: 251 -LKALVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFL 309
             + L   M     +   +  +   L              ++LNL  L            
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLD-----------YDQRLNLSDLLQDAINRNPEMK 415

Query: 310 KFPKLQNI-TQALHIKDCN----SLPLNLLHLANMEHLQL 344
              K   I  +   I +       +   +  L  ++ +  
Sbjct: 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYF 455

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 183 CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG 227
           CP L  L +  N I ++ E      P L +L+++ N     + V 
Sbjct: 805 CPSLIQLQIGSNDIRKVDEKL---TPQLYILDIADNP-NISIDVT 845

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 72.7 bits (178), Expect = 4e-14
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
             + L  N +     +   P L  + L YN +E+I    F  +  L  L +S N  L  L
Sbjct: 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVAL 293

Query: 225 PVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSN 264
            +    + +L  LDLS   +  + +       L  L+   N
Sbjct: 294 NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 334

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 66.1 bits (161), Expect = 5e-12
 Identities = 42/212 (19%), Positives = 75/212 (35%), Gaps = 21/212 (9%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPS 209
           LTD   +  + G+  + L  NE++ +         RL+ L +  N +  +   + Q +P+
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPT 302

Query: 210 LRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQE----LKALVLRM--LHCGS 263
           L+VL+LS NH L  +         L +L L    +  L       LK L L      C S
Sbjct: 303 LKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNS 361

Query: 264 NHWPIAEEGNVLSDDAE-------SLMKEIHCLE----QLNLIALSLRGSRGVENFLKFP 312
                        DDA+        L   + C E     L+ +   +  +  VE   +  
Sbjct: 362 LRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQ 421

Query: 313 KLQNITQALHIKDCNSLPLNLLHLANMEHLQL 344
              + T  ++     S  +       ++  + 
Sbjct: 422 GRCSATDTINSVQSLSHYITQQGGVPLQGNEQ 453

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.9 bits (145), Expect = 5e-10
 Identities = 11/86 (12%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 167 ISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV 226
           I +   ++    +  T    + +  + + + ++  +   S   + +LNL+    + E+  
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDT 92

Query: 227 GI-SSLVSLHHLDLSSTKVRGLPQEL 251
              +   ++  L +    +R LP  +
Sbjct: 93  YAFAYAHTIQKLYMGFNAIRYLPPHV 118

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 25/125 (20%)

Query: 162 EGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSL-------------- 207
             +   ++  N + +L        ++ L   +N I  +       L              
Sbjct: 192 PSLFHANVSYNLLSTLA---IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA 248

Query: 208 -----PSLRVLNLSVNHYLTELPVGI-SSLVSLHHLDLSSTKVRGLPQELKALV-LRMLH 260
                P L  ++LS N  L ++       +  L  L +S+ ++  L    + +  L++L 
Sbjct: 249 WLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 307

Query: 261 CGSNH 265
              NH
Sbjct: 308 LSHNH 312

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 40/201 (19%)

Query: 165 KRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSL--------------- 207
             +S+  N ++ +          LQ L L  N +  +  S   SL               
Sbjct: 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209

Query: 208 -PSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHW 266
             ++  L+ S N  +  +   +   V L  L L    +      L    L  +    N  
Sbjct: 210 PIAVEELDASHNS-INVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE- 265

Query: 267 PIAEEGNVLSDDAESLMKEIHCLEQL-NLIALSLRGSRGVENFLKFPKLQNITQALHIKD 325
            + +    +               ++  L  L +  +R V   L    +  + + L +  
Sbjct: 266 -LEK----IMYHP---------FVKMQRLERLYISNNRLVALNLYGQPIPTL-KVLDLSH 310

Query: 326 CN--SLPLNLLHLANMEHLQL 344
            +   +  N      +E+L L
Sbjct: 311 NHLLHVERNQPQFDRLENLYL 331

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 11/104 (10%)

Query: 172 NEIQSLPQIPTCPR--LQTLLLEYNHIEEITESFFQ-----SLPSLRVLNLSVNHYLTEL 224
           N     P+            +    HI+  T+  +      +L + +++    +  + +L
Sbjct: 8   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKL 66

Query: 225 PVGI-SSLVSLHHLDLSSTKVRGLPQEL--KALVLRMLHCGSNH 265
           P  +  S   +  L+L+  ++  +       A  ++ L+ G N 
Sbjct: 67  PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 110

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 19/191 (9%)

Query: 164 VKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
           +K + L  N+I  +    +  C  LQ L+L+ + I  I    F SL SL  L+LS NH L
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-L 86

Query: 222 TELPVG-ISSLVSLHHLDLSSTKVRGLPQ--ELKALV-LRMLHCGSNHWPIAEEGNVLSD 277
           + L       L SL +L+L     + L        L  L+ L  G+            S+
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV--------ETFSE 138

Query: 278 DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLL-HL 336
                   +  L +L + ALSLR +   ++      + ++T  LH+ +   L       L
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLT--LHLSESAFLLEIFADIL 195

Query: 337 ANMEHLQLFSI 347
           +++ +L+L   
Sbjct: 196 SSVRYLELRDT 206

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 11/112 (9%)

Query: 164 VKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
           ++R+ + +  +            +++ + +E + +  +  SF Q L SL  L+LS N  +
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL-M 346

Query: 222 TELPVG----ISSLVSLHHLDLSSTKVRGLPQELKALV----LRMLHCGSNH 265
            E  +       +  SL  L LS   +R + +  + L+    L  L    N 
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 13/185 (7%)

Query: 172 NEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI- 228
                + +        L  L ++   +        +S+  +  L L ++     L     
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFA 192

Query: 229 SSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHC 288
             L S+ +L+L  T +         +           +  +   +   ++   L++ I  
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

Query: 289 LEQLNLIALSLRGSRGV-----ENFLKFPKLQNIT-QALHIKDCN---SLPLNLLHLANM 339
           L ++     +L G         +   +  K++ +T + LHI        L      L  +
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 340 EHLQL 344
           + + +
Sbjct: 313 KRITV 317

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 24/123 (19%)

Query: 165 KRISLMENEIQSLPQIP----TCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220
           + + L +N ++S+ +      T   L +L +  N    + +S  Q    +R LNLS    
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC-QWPEKMRFLNLSSTG- 421

Query: 221 LTELPVGI------------------SSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCG 262
           +  +   I                    L  L  L +S  K++ LP      VL ++   
Sbjct: 422 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKIS 481

Query: 263 SNH 265
            N 
Sbjct: 482 RNQ 484

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 164 VKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE 223
           ++ + +  N + S       PRLQ L +  N ++ + ++     P L V+ +S N  L  
Sbjct: 433 LEVLDVSNNNLDSFSLFL--PRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQ-LKS 487

Query: 224 LPVGI-SSLVSLHHLDLSS 241
           +P GI   L SL  + L +
Sbjct: 488 VPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 12/54 (22%), Positives = 27/54 (50%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN 218
           + + +  N++++LP     P L  + +  N ++ + +  F  L SL+ + L  N
Sbjct: 454 QELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 11/76 (14%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 168 SLMENEIQSLPQIP--TCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP 225
               +E   + ++       ++ L +   ++     + +  L  ++ + +  +  +  +P
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVP 326

Query: 226 VGI-SSLVSLHHLDLS 240
                 L SL  LDLS
Sbjct: 327 CSFSQHLKSLEFLDLS 342

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 11/98 (11%)

Query: 172 NEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISS 230
             I+ +   IP    L+ L +  N+++         LP L+ L +S N  L  LP   S 
Sbjct: 420 TGIRVVKTCIPQ--TLEVLDVSNNNLDSF----SLFLPRLQELYISRNK-LKTLPDA-SL 471

Query: 231 LVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHW 266
              L  + +S  +++ +P      L  L+ +   +N W
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 33/195 (16%)

Query: 165 KRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
             +  +   I  L   +   C          +  + ++E       ++R L++   +   
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 223 ELPVGISSLVSLHHLDLSSTKVRGLP----QELKAL-VLRMLHCGSNHWPIAEEGNVLSD 277
           +L    S L  +  + + ++KV  +P    Q LK+L  L +              N++ +
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL------------SENLMVE 348

Query: 278 DAESLMKEIHCLEQLNLIALSLRG------SRGVENFLKFPKLQNITQALHIKDCN--SL 329
           +              +L  L L         +  E  L    L +    L I       +
Sbjct: 349 EYLKNSACKGAWP--SLQTLVLSQNHLRSMQKTGEILLTLKNLTS----LDISRNTFHPM 402

Query: 330 PLNLLHLANMEHLQL 344
           P +      M  L L
Sbjct: 403 PDSCQWPEKMRFLNL 417

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 24/170 (14%)

Query: 182 TCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLS 240
           +C               I         +++ L+LS N  +T +  G + +  +L  L L 
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGLT---AAMKSLDLSFN-KITYIGHGDLRACANLQVLILK 58

Query: 241 STKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALS 298
           S+++  +  +   +L  L  L    NH         LS  + S    +  L+ LNL+   
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNH---------LSSLSSSWFGPLSSLKYLNLMGNP 109

Query: 299 LRGSRGVENFLKFPKLQNITQALHIKDCNSL----PLNLLHLANMEHLQL 344
            +       F     LQ     L I +  +      ++   L ++  L++
Sbjct: 110 YQTLGVTSLFPNLTNLQT----LRIGNVETFSEIRRIDFAGLTSLNELEI 155

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 164 VKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
            + + L +N I++L Q    + P L+ L L  N +  +    F +L +LR L L  N  L
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-L 92

Query: 222 TELPVGI-SSLVSLHHLDLSSTKVRGLP----QELKALVLRMLHCGSNH 265
             +P+G+ + L +L  LD+S  K+  L     Q+L    L+ L  G N 
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN--LKSLEVGDND 139

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.9 bits (161), Expect = 5e-12
 Identities = 43/190 (22%), Positives = 69/190 (36%), Gaps = 27/190 (14%)

Query: 165 KRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
           + + L  N ++ +P         L  L +  N I  + +  FQ L +L+ L +  N  L 
Sbjct: 83  RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LV 141

Query: 223 ELPVGI-SSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDA 279
            +     S L SL  L L    +  +P E L  L  L +L        I      + D +
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL--NINA----IRDYS 195

Query: 280 ESLMKEIHCLEQLNLIALSL--RGSRGVENFLKFPKLQNITQALHIKDCN--SLPLNLL- 334
                    L +L ++ +S          N L    L +    L I  CN  ++P   + 
Sbjct: 196 ------FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS----LSITHCNLTAVPYLAVR 245

Query: 335 HLANMEHLQL 344
           HL  +  L L
Sbjct: 246 HLVYLRFLNL 255

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 165 KRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
           ++++L +  + S+P   +     L  L L + +I  I +  F+ L  L+VL +S   YL 
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214

Query: 223 ELPVGISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNH 265
            +       ++L  L ++   +  +P   ++ LV LR L+   N 
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 165 KRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE 223
           + +        ++P+ IP     + L L  N I+ + +  F S P L  L L+ N  ++ 
Sbjct: 14  RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSA 70

Query: 224 LPVGI-SSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNH 265
           +  G  ++L +L  L L S +++ +P      L  L  L    N 
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK 115

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 35/211 (16%), Positives = 85/211 (40%), Gaps = 19/211 (9%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           +TD     + + V  +      I+S+  +     L  +    N + +I  +  ++L  L 
Sbjct: 36  VTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLV 93

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNH----W 266
            + ++ N  + ++   +++L +L  L L + ++  +   LK L  L  L   SN      
Sbjct: 94  DILMNNNQ-IADIT-PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDIS 150

Query: 267 PIAEEGNVLSDDAESLMKEIHCLEQL-NLIALSLRGSR--GVENFLKFPKLQNITQALHI 323
            ++   ++      + + ++  L  L  L  L +  ++   +    K   L++    L  
Sbjct: 151 ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES----LIA 206

Query: 324 KDCNSLPLNLLHLANMEHLQLFSIWDSNLED 354
            + N +  ++  L  + +L   S+  + L+D
Sbjct: 207 TN-NQIS-DITPLGILTNLDELSLNGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.0 bits (159), Expect = 8e-12
 Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 30/197 (15%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           +             +  L +  +          ++ TL  +   I+ I     + L +L 
Sbjct: 14  INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLT 71

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAE 270
            +N S N  LT++   + +L  L  + +++ ++  +   L  L  L  L   +N      
Sbjct: 72  QINFSNNQ-LTDIT-PLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQ----- 123

Query: 271 EGNVLSDDAESLMKEIHCLEQL-NLIALSLRGSR--GVENFLKFPKLQNITQALHIKDCN 327
                       + +I  L+ L NL  L L  +    +        LQ     L   +  
Sbjct: 124 ------------ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ----LSFGNQV 167

Query: 328 SLPLNLLHLANMEHLQL 344
           +    L +L  +E L +
Sbjct: 168 TDLKPLANLTTLERLDI 184

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 22/116 (18%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           +++   +     +  + L EN+++ +  I     L  L L +N+I +I+     SL  L+
Sbjct: 277 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHW 266
            L    N  ++++   +++L +++ L     ++  L   L  L  +  L      W
Sbjct: 335 RLFFYNNK-VSDVS-SLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQAW 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 40/195 (20%), Positives = 71/195 (36%), Gaps = 25/195 (12%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           ++D   + +   ++ +    N+I  +  +     L  L L  N +++I      SL +L 
Sbjct: 189 VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLT 246

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAE 270
            L+L+ N  ++ L   +S L  L  L L + ++  +   L  L  L  L    N      
Sbjct: 247 DLDLANNQ-ISNLA-PLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQ----- 298

Query: 271 EGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCN-SL 329
               L D     +  I  L+ L  + L       +       KLQ     L   +   S 
Sbjct: 299 ----LED-----ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQR----LFFYNNKVSD 345

Query: 330 PLNLLHLANMEHLQL 344
             +L +L N+  L  
Sbjct: 346 VSSLANLTNINWLSA 360

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           +++   +     +  + L  N+I ++  +     L  L L  N +E+I+     +L +L 
Sbjct: 255 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLT 312

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNH 265
            L L  N+ ++++   +SSL  L  L   + KV  +   L  L  +  L  G N 
Sbjct: 313 YLTLYFNN-ISDIS-PVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQ 364

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 26/170 (15%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           L D   +     +  + L  N+I +L  +    +L  L L  N I  I+      L +L 
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALT 290

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAE 270
            L L+ N  L ++   IS+L +L +L L    +  +   + +L  L+ L   +N      
Sbjct: 291 NLELNENQ-LEDIS-PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNNK----- 342

Query: 271 EGNVLSDDAESLMKEIHCLEQL-NLIALSLRGSR--GVENFLKFPKLQNI 317
                       + ++  L  L N+  LS   ++   +       ++  +
Sbjct: 343 ------------VSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 380

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 2/98 (2%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           ++D   +     +  +S   N+I  L  +    R+  L L          ++  ++    
Sbjct: 343 VSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQ 249
            +           P  IS   S    D++        +
Sbjct: 403 TVKNVTG--ALIAPATISDGGSYTEPDITWNLPSYTNE 438

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 169 LMENEIQSLPQIPT---CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP 225
              + ++ + +         L  L + + H        F  L SL VL ++ N +     
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

Query: 226 VGI-SSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNH 265
             I + L +L  LDLS  ++  L      +L  L++L+   N+
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 41/190 (21%), Positives = 61/190 (32%), Gaps = 27/190 (14%)

Query: 165 KRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE 223
             I      + S+P  IP       L LE N ++ +    F  L  L  L+LS N  L+ 
Sbjct: 10  TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSF 66

Query: 224 LPVGI---SSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDA 279
                       SL +LDLS   V  +      L  L  L    +        N+     
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS--------NLKQMSE 118

Query: 280 ESLMKEIHCLEQLNLIALSLRG-SRGVENFLKFPKLQNITQALHIKDCNSL----PLNLL 334
            S+   +  L  L++     R    G+  F     L+     L +   +      P    
Sbjct: 119 FSVFLSLRNLIYLDISHTHTRVAFNGI--FNGLSSLEV----LKMAGNSFQENFLPDIFT 172

Query: 335 HLANMEHLQL 344
            L N+  L L
Sbjct: 173 ELRNLTFLDL 182

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 183 CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI-SSLVSLHHLDLSS 241
              L  L L    +E+++ + F SL SL+VLN+S N+    L       L SL  LD S 
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSL 232

Query: 242 TKVRGLPQE-LKALV--LRMLHCGSNHW 266
             +    ++ L+     L  L+   N +
Sbjct: 233 NHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 165 KRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
             + L + +++ L      +   LQ L + +N+   +    ++ L SL+VL+ S+NH + 
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IM 236

Query: 223 ELPVGI--SSLVSLHHLDLSS 241
                       SL  L+L+ 
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQ 257

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 163 GVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220
             +RI L  N I  +P      C  L  L L  N +  I  + F  L  L  L+LS N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 221 LTELPVGI-SSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNH 265
           L  +       L  LH L L    ++ L     + L  L+ L+   N 
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.2 bits (157), Expect = 8e-12
 Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 165 KRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
           + + L +N +Q+LP         L  L L  N I  + E  F+ L SL  L L  N  + 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VA 190

Query: 223 ELPVGI-SSLVSLHHLDLSSTKVRGLPQELKALV--LRMLHCGSNHW 266
            +       L  L  L L +  +  LP E  A +  L+ L    N W
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 8/100 (8%)

Query: 171 ENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI- 228
           +  +Q++P  IP     Q + L  N I  +  + F++  +L +L L  N  L  +     
Sbjct: 20  QQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAF 76

Query: 229 SSLVSLHHLDLSS-TKVRGLPQE-LKALV-LRMLHCGSNH 265
           + L  L  LDLS   ++R +       L  L  LH     
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 4/103 (3%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
             + + E ++  +P+      L  L L++N I+ I          L  L L  N  +  +
Sbjct: 175 NYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMI 232

Query: 225 PVGI-SSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNH 265
             G  S L +L  L L + K+  +P  L  L  L++++  +N+
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 15/136 (11%)

Query: 163 GVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220
               + L  N+I  L          L  L+L  N I +I E  F  L  L+ L +S NH 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH- 113

Query: 221 LTELPVGISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDD 278
           L E+P  + S  SL  L +   ++R +P+     L  +  +  G N  P+   G      
Sbjct: 114 LVEIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN--PLENSG--FEPG 167

Query: 279 AESLMKEIHCLEQLNL 294
           A   +K    L  L +
Sbjct: 168 AFDGLK----LNYLRI 179

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.3 bits (168), Expect = 4e-13
 Identities = 41/207 (19%), Positives = 84/207 (40%), Gaps = 31/207 (14%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           +TD    EE E + ++ +   ++ S+  I     L+ L L  N I +I+     +L  L 
Sbjct: 34  VTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLT 91

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAE 270
            L +  N  +T++   + +L +L  L L+   +  +   L  L  +  L+ G+NH     
Sbjct: 92  NLYIGTNK-ITDIS-ALQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANH----- 143

Query: 271 EGNVLSDDAESLMKEIHCLEQL-NLIALSLRGSR--GVENFLKFPKLQNITQALHIKDCN 327
                       + ++  L  +  L  L++  S+   V        L +    L +   N
Sbjct: 144 -----------NLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYS----LSLNY-N 187

Query: 328 SLPLNLLHLANMEHLQLFSIWDSNLED 354
            +  ++  LA++  L  F+ + + + D
Sbjct: 188 QI-EDISPLASLTSLHYFTAYVNQITD 213

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.2 bits (165), Expect = 1e-12
 Identities = 37/208 (17%), Positives = 81/208 (38%), Gaps = 31/208 (14%)

Query: 151 GLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSL 210
            +     IE    ++ ++L  N+I  +  +    +L  L +  N I +I  S  Q+L +L
Sbjct: 55  KVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--SALQNLTNL 112

Query: 211 RVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIA 269
           R L L+ ++ ++++   +++L  ++ L+L +         L  +  L  L    +     
Sbjct: 113 RELYLNEDN-ISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK---- 166

Query: 270 EEGNVLSDDAESLMKEIHCLEQL-NLIALSLRGSR--GVENFLKFPKLQNITQALHIKDC 326
                + D        +  +  L +L +LSL  ++   +        L            
Sbjct: 167 -----VKD--------VTPIANLTDLYSLSLNYNQIEDISPLASLTSLHY----FTA-YV 208

Query: 327 NSLPLNLLHLANMEHLQLFSIWDSNLED 354
           N +  ++  +ANM  L    I ++ + D
Sbjct: 209 NQIT-DITPVANMTRLNSLKIGNNKITD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.0 bits (149), Expect = 1e-10
 Identities = 31/188 (16%), Positives = 69/188 (36%), Gaps = 32/188 (17%)

Query: 163 GVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
           G   ++ +   I  +            +L+   + ++     + L S+  L ++    + 
Sbjct: 1   GAATLATLPAPINQIFPDADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEK-VA 57

Query: 223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAES 281
            +  GI  L +L +L+L+  ++  +   L  LV L  L+ G+N                 
Sbjct: 58  SIQ-GIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTN----------------- 98

Query: 282 LMKEIHCLEQL-NLIALSLRGSR--GVENFLKFPKLQNITQALHIKDCN--SLPLNLLHL 336
            + +I  L+ L NL  L L       +       K+ +    L++   +  S    L ++
Sbjct: 99  KITDISALQNLTNLRELYLNEDNISDISPLANLTKMYS----LNLGANHNLSDLSPLSNM 154

Query: 337 ANMEHLQL 344
             + +L +
Sbjct: 155 TGLNYLTV 162

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 24/116 (20%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           +TD   +     +  + +  N+I  L  +    +L  L +  N I +I  +  + L  L+
Sbjct: 211 ITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLK 268

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNH 265
           +LN+  N  ++++   +++L  L+ L L++ ++     + +  L  L  L    NH
Sbjct: 269 MLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 31/196 (15%), Positives = 73/196 (37%), Gaps = 26/196 (13%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           +       +     R  L +  +  +        +  L++    +  I     + L +L 
Sbjct: 12  INQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG--IEYLTNLE 69

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAE 270
            LNL+ N  +T++   +S+LV L +L + + K+  +   L+ L  LR L+   ++     
Sbjct: 70  YLNLNGNQ-ITDIS-PLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN----- 121

Query: 271 EGNVLSDDAESLMKEIHCLEQL-NLIALSLRGSRGVENFLKFPKLQNITQALHIKDCN-S 328
                       + +I  L  L  + +L+L  +  + +      +  +   L + +    
Sbjct: 122 ------------ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY-LTVTESKVK 168

Query: 329 LPLNLLHLANMEHLQL 344
               + +L ++  L L
Sbjct: 169 DVTPIANLTDLYSLSL 184

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.5 bits (145), Expect = 4e-10
 Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 6/114 (5%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           + D   +     +   +   N+I  +  +    RL +L +  N I ++  S   +L  L 
Sbjct: 189 IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL--SPLANLSQLT 246

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSN 264
            L +  N  ++++   +  L  L  L++ S ++  +   L  L  L  L   +N
Sbjct: 247 WLEIGTNQ-ISDIN-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNN 297

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 5e-10
 Identities = 19/95 (20%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 151 GLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSL 210
            ++D   +++   +K +++  N+I  +  +    +L +L L  N +          L +L
Sbjct: 254 QISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 211 RVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVR 245
             L LS NH +T++   ++SL  +   D ++  ++
Sbjct: 314 TTLFLSQNH-ITDIR-PLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 4/115 (3%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           +TD   +     +  + +  N+I  +  +    +L+ L +  N I +I  S   +L  L 
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN 290

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNH 265
            L L+ N    E    I  L +L  L LS   +  +   L +L  +      +  
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDSADFANQV 344

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.1 bits (167), Expect = 6e-13
 Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 4/103 (3%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
             I + +  I ++PQ    P L  L L+ N I ++  +  + L +L  L LS N  ++ +
Sbjct: 174 SYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAV 231

Query: 225 PVGI-SSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNH 265
             G  ++   L  L L++ K+  +P  L     +++++  +N+
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 274

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 28/187 (14%)

Query: 165 KRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE 223
           + +   +  ++ +P+ +P  P    L L+ N I EI +  F++L +L  L L  N  +++
Sbjct: 34  RVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISK 90

Query: 224 LPVGI-SSLVSLHHLDLSSTKVRGLPQEL-KALVLRMLHCGSNHWPIAEEGNVLSDDAES 281
           +  G  + LV L  L LS  +++ LP+++ K   L+ L    N          ++   +S
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKT--LQELRVHENE---------ITKVRKS 139

Query: 282 LMKEIHCLEQLNLIALSLRGSRGVEN--FLKFPKLQNITQALHIKDCN--SLPLNLLHLA 337
           +   ++ +  + L    L+ S G+EN  F    KL      + I D N  ++P  L    
Sbjct: 140 VFNGLNQMIVVELGTNPLK-SSGIENGAFQGMKKL----SYIRIADTNITTIPQGL--PP 192

Query: 338 NMEHLQL 344
           ++  L L
Sbjct: 193 SLTELHL 199

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 165 KRISLMENEIQSLPQIPTCP--------RLQTLLLEYNHIE--EITESFFQSLPSLRVLN 214
           + + L  N I ++     CP            + L  N ++  EI  S F+ +     + 
Sbjct: 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325

Query: 215 LSVN 218
           L   
Sbjct: 326 LGNY 329

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.1 bits (169), Expect = 7e-13
 Identities = 48/206 (23%), Positives = 76/206 (36%), Gaps = 19/206 (9%)

Query: 164 VKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
           V+ + L    + SL      T   L+ L L YN I +I +  F  L +L+VLNLS N  L
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-L 326

Query: 222 TELPVGI-SSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSN------HWPIAEEG 272
            EL       L  + ++DL    +  +  +  K L  L+ L    N        P   + 
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDI 386

Query: 273 NVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQ------NITQALHIKDC 326
            +  +   +L K       ++L    L     +   L+ P LQ      N   +      
Sbjct: 387 FLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446

Query: 327 NSLPLNLLHLANMEHLQLFSIWDSNL 352
            S   +L  L  +    L   W++ L
Sbjct: 447 PSENPSLEQL-FLGENMLQLAWETEL 471

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 24/191 (12%)

Query: 169 LMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI 228
                +  +PQ+      + LLL +N+I  +T S F  L  L++L L   +    +    
Sbjct: 11  YRFCNLTQVPQVL--NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68

Query: 229 -SSLVSLHHLDLSSTKVRGLP----QELKAL-VLRMLHCGSNHWPIAEEGNVLSDDAESL 282
             +L +L  LDL S+K+  L     Q L  L  LR+  CG +   +           +  
Sbjct: 69  FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL----------KDGY 118

Query: 283 MKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNIT------QALHIKDCNSLPLNLLHL 336
            + +  L +L+L    +R      +F K   L++I         +   +   L    L  
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 337 ANMEHLQLFSI 347
            ++    L+S 
Sbjct: 179 FSLAANSLYSR 189

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 10/103 (9%)

Query: 172 NEIQSLPQIPTC---PRLQTLLLEYNHIE-----EITESFFQSLPSLRVLNLSVNHYLTE 223
           N   S     T    P L+ L L  N ++     E+    F+ L  L+VL L+ N+ L  
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNS 494

Query: 224 LPVGI-SSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNH 265
           LP G+ S L +L  L L+S ++  L        L +L    N 
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQ 537

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 2/85 (2%)

Query: 166 RISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP 225
            + L                LQ L L +N++  +    F  L +LR L+L+ N  LT L 
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-LTVLS 520

Query: 226 VGISSLVSLHHLDLSSTKVRGLPQE 250
                  +L  LD+S  ++     +
Sbjct: 521 HN-DLPANLEILDISRNQLLAPNPD 544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.7 bits (163), Expect = 3e-12
 Identities = 39/188 (20%), Positives = 68/188 (36%), Gaps = 17/188 (9%)

Query: 164 VKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
            K + L  N ++ L      + P LQ L L    I+ I +  +QSL  L  L L+ N  +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-I 88

Query: 222 TELPVGI-SSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDD 278
             L +G  S L SL  L    T +  L    +  L  L+ L+   N     +     S+ 
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN- 147

Query: 279 AESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCN--SLPLNLLHL 336
                  +  LE L+L +  ++      +     ++  +  +L +       +       
Sbjct: 148 -------LTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 337 ANMEHLQL 344
             +  L L
Sbjct: 200 IRLHKLTL 207

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.5 bits (160), Expect = 8e-12
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEI--TESFFQSLPSLRVLNLSVNHYLT 222
           KR++   N+  +       P L+ L L  N +              SL+ L+LS N  + 
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VI 386

Query: 223 ELPVGISSLVSLHHLDLSSTKVRGLPQE 250
            +      L  L HLD   + ++ + + 
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 165 KRISLMENEIQSLPQ---IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
           + + +  N  Q             L  L L    +E+++ + F SL SL+VLN++ N  L
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-L 506

Query: 222 TELPVGI-SSLVSLHHLDLSS 241
             +P GI   L SL  + L +
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 42/193 (21%), Positives = 70/193 (36%), Gaps = 25/193 (12%)

Query: 165 KRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
           + + L   EIQ++      +   L TL+L  N I+ +    F  L SL+ L     + L 
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LA 113

Query: 223 ELPVG-ISSLVSLHHLDLSSTKVR--GLPQELKALV-LRMLHCGSNHWPIAEEGNV---- 274
            L    I  L +L  L+++   ++   LP+    L  L  L   SN        ++    
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 275 -LSDDAESL------MKEIH--CLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKD 325
            +     SL      M  I     +++ L  L+LR      NF     ++   Q L   +
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN-----NFDSLNVMKTCIQGLAGLE 228

Query: 326 CNSLPLNLLHLAN 338
            + L L       
Sbjct: 229 VHRLVLGEFRNEG 241

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 7/101 (6%)

Query: 172 NEIQSLPQ--IPTCPRLQTLLLEYNHIEE-ITESFFQSLPSLRVLNLSVNHYLTELPVGI 228
              +            L+ L +  N  +E      F  L +L  L+LS    L +L    
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA 489

Query: 229 -SSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHW 266
            +SL SL  L+++S +++ +P      L  L+ +   +N W
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 11/104 (10%)

Query: 165 KRISLMENEIQSLPQIPT---CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
           + +    + ++ + +         L  L + + H        F  L SL VL ++ N + 
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 222 TELPVGI-SSLVSLHHLDLSSTKVRGLPQE-------LKALVLR 257
                 I + L +L  LDLS  ++  L          L+ L + 
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 24/117 (20%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           +          G + + L+  +    P +     L+ L    N            LPSL 
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLK-LKSLKRLTFTSNKGGNA--FSEVDLPSLE 350

Query: 212 VLNLSVN--HYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNH 265
            L+LS N   +            SL +LDLS   V  +      L  L  L    ++
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 165 KRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN 218
             + L + +++ L      +   LQ L +  N ++ + +  F  L SL+ + L  N
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.5 bits (160), Expect = 4e-12
 Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 22/186 (11%)

Query: 168 SLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV 226
                 + S+P  +     +++L L  N I  I+ S  Q   +L+ L L+ N  +  +  
Sbjct: 37  KGSSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEE 93

Query: 227 GI-SSLVSLHHLDLSSTKVRGLPQEL--KALVLRMLHCGSNHWPIAEEGNVLSDDAESLM 283
              SSL SL HLDLS   +  L          L  L+   N +    E ++ S      +
Sbjct: 94  DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH-----L 148

Query: 284 KEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCN--SLPLNLL-HLANME 340
            ++  L   N+   +       ++F     L    + L I   +  S     L  + N+ 
Sbjct: 149 TKLQILRVGNMDTFT---KIQRKDFAGLTFL----EELEIDASDLQSYEPKSLKSIQNVS 201

Query: 341 HLQLFS 346
           HL L  
Sbjct: 202 HLILHM 207

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 163 GVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220
            VK + L  N I  +    +  C  LQ L+L  N I  I E  F SL SL  L+LS N+ 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY- 111

Query: 221 LTELPVGI-SSLVSLHHLDLSSTKVRGLPQEL---KALVLRMLHCGSNH 265
           L+ L       L SL  L+L     + L +         L++L  G+  
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 16/112 (14%), Positives = 40/112 (35%), Gaps = 11/112 (9%)

Query: 165 KRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY-- 220
           + + +  +++QS     + +   +  L+L       + E F     S+  L L       
Sbjct: 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236

Query: 221 --LTELPVGISS----LVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNH 265
              +EL  G ++      +  ++ ++   +  + + L  +  L  L    N 
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 17/116 (14%)

Query: 165 KRISLMENEIQSLPQI-------PTCPRLQTLLLEYNHIEEITESFFQSLP---SLRVLN 214
             + L   +   L +I         C  L+   L+  H  E++     SL    + R + 
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260

Query: 215 LSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQE----LKALVLRMLHCGSNHW 266
           ++    L ++   ++ +  L  L+ S  +++ +P      L +  L+ +   +N W
Sbjct: 261 ITDES-LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTS--LQKIWLHTNPW 313

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.9 bits (161), Expect = 4e-12
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
           K ++L    I+ +P +     L+ L +  NH  EI    F  L SL+ L +  +  ++ +
Sbjct: 199 KYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLI 257

Query: 225 PVG-ISSLVSLHHLDLSSTKVRGLPQELKALV--LRMLHCGSNHW 266
                  L SL  L+L+   +  LP +L   +  L  LH   N W
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.2 bits (159), Expect = 8e-12
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 165 KRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE 223
            ++      +  +PQ IP     + L L  N+I+ I    F+ L  L VL L  N  + +
Sbjct: 57  SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQ 113

Query: 224 LPVGI-SSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNH 265
           + VG  + L SL+ L+L    +  +P    + L  LR L   +N 
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP 158

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 165 KRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
             + L +N +  +P        +L+ L L  N IE I    F  +PSL  L+L     L 
Sbjct: 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185

Query: 223 ELPVGI-SSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNH 265
            +  G    L +L +L+L    ++ +P     + L  L    NH
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH 229

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.0 bits (143), Expect = 8e-10
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 7/107 (6%)

Query: 165 KRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
           + + L  N I+ +          L TL L  N +  I    F+ L  LR L L  N  + 
Sbjct: 102 EVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IE 160

Query: 223 ELPVGI-SSLVSLHHLDLSST-KVRGLPQE-LKALV-LRMLHCGSNH 265
            +P    + + SL  LDL    K+  + +   + L  L+ L+ G  +
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.9 bits (161), Expect = 4e-12
 Identities = 36/205 (17%), Positives = 68/205 (33%), Gaps = 29/205 (14%)

Query: 153 TDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRV 212
           TD    E+   +  +    + I  +  I     L  L+   N+I  +         +L  
Sbjct: 33  TDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTY 89

Query: 213 LNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEG 272
           L    N  LT L   ++ L  L +L+  + K+  L    +  +L  L+C  N        
Sbjct: 90  LACDSNK-LTNLD--VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNT------- 138

Query: 273 NVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLN 332
                     + EI       L  L    +      +    +   TQ L   DC+   + 
Sbjct: 139 ----------LTEIDVSHNTQLTELDCHLN----KKITKLDVTPQTQ-LTTLDCSFNKIT 183

Query: 333 LLHLANMEHLQLFSIWDSNLEDWNV 357
            L ++  + L   +   +N+   ++
Sbjct: 184 ELDVSQNKLLNRLNCDTNNITKLDL 208

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 35/193 (18%), Positives = 58/193 (30%), Gaps = 27/193 (13%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
                 +     +  +    N+I  L  +     L  L  + N+I ++          L 
Sbjct: 160 KITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD---LNQNIQLT 215

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEE 271
            L+ S N  LTE+   ++ L  L + D S   +  L     +  L  LHC          
Sbjct: 216 FLDCSSNK-LTEID--VTPLTQLTYFDCSVNPLTELDVSTLSK-LTTLHCIQTD------ 265

Query: 272 GNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPL 331
                      + EI       LI     G R +   L       +   L  +      L
Sbjct: 266 -----------LLEIDLTHNTQLIYFQAEGCRKI-KELDVTHNTQLYL-LDCQAAGITEL 312

Query: 332 NLLHLANMEHLQL 344
           +L     + +L L
Sbjct: 313 DLSQNPKLVYLYL 325

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 36/206 (17%), Positives = 68/206 (33%), Gaps = 34/206 (16%)

Query: 151 GLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSL 210
            +TD   IE+  G+ ++    N I +L  +     L  L  + N +  +       L  L
Sbjct: 53  SITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKL 108

Query: 211 RVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIA 269
             LN   N  LT+L   +S    L +L+ +   +  +   +     L  L C  N     
Sbjct: 109 TYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNK---- 159

Query: 270 EEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVE-NFLKFPKLQNITQALHIKDCNS 328
                        + ++    Q  L  L    ++  E +  +   L  +       +C++
Sbjct: 160 ------------KITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRL-------NCDT 200

Query: 329 LPLNLLHLANMEHLQLFSIWDSNLED 354
             +  L L     L       + L +
Sbjct: 201 NNITKLDLNQNIQLTFLDCSSNKLTE 226

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
             +      I  L  +   P+L  L L    + E+          L+ L+    H + + 
Sbjct: 300 YLLDCQAAGITELD-LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAH-IQDF 354

Query: 225 PVGISSLVSLHHLDLSSTKVRGLPQE 250
              +  + +L++   +  +   +P+E
Sbjct: 355 SS-VGKIPALNNNFEAEGQTITMPKE 379

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.1 bits (159), Expect = 4e-12
 Identities = 40/211 (18%), Positives = 86/211 (40%), Gaps = 32/211 (15%)

Query: 151 GLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSL 210
           G+T    ++    +  + L +N+I  L  +    ++  L L  N ++ +  S    L S+
Sbjct: 52  GVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SAIAGLQSI 109

Query: 211 RVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIA 269
           + L+L+    +T++   ++ L +L  L L   ++  +   L  L  L+ L  G+      
Sbjct: 110 KTLDLTSTQ-ITDVT-PLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQ---- 162

Query: 270 EEGNVLSDDAESLMKEIHCLEQL-NLIALSLRGSR--GVENFLKFPKLQNITQALHIKDC 326
                +SD        +  L  L  L  L    ++   +      P L      +H+K+ 
Sbjct: 163 -----VSD--------LTPLANLSKLTTLKADDNKISDISPLASLPNLIE----VHLKN- 204

Query: 327 NSLPLNLLHLANMEHLQLFSIWDSNLEDWNV 357
           N +  ++  LAN  +L + ++ +  + +  V
Sbjct: 205 NQI-SDVSPLANTSNLFIVTLTNQTITNQPV 234

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.7 bits (158), Expect = 6e-12
 Identities = 44/207 (21%), Positives = 85/207 (41%), Gaps = 32/207 (15%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           +TD     + +G+  +S     + ++  +     L  L L+ N I ++  +  ++L  + 
Sbjct: 31  VTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL--APLKNLTKIT 88

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAE 270
            L LS N  L  +   I+ L S+  LDL+ST++  +   L  L  L++L+   N      
Sbjct: 89  ELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQ----- 140

Query: 271 EGNVLSDDAESLMKEIHCLEQL-NLIALSLRGSR--GVENFLKFPKLQNITQALHIKDCN 327
                       +  I  L  L NL  LS+  ++   +       KL      L   D N
Sbjct: 141 ------------ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTT----LKADD-N 183

Query: 328 SLPLNLLHLANMEHLQLFSIWDSNLED 354
            +  ++  LA++ +L    + ++ + D
Sbjct: 184 KIS-DISPLASLPNLIEVHLKNNQISD 209

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 32/195 (16%)

Query: 164 VKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE 223
             +I+  ++ +           + TL      +  I     Q L +L  L L  N  +T+
Sbjct: 21  AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ-ITD 77

Query: 224 LPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESL 282
           L   + +L  +  L+LS   ++ +   +  L  ++ L   S                   
Sbjct: 78  LA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ----------------- 118

Query: 283 MKEIHCLEQL-NLIALSLRGSR--GVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANM 339
           + ++  L  L NL  L L  ++   +        LQ     L I +   +  +L  LAN+
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQY----LSIGN-AQVS-DLTPLANL 172

Query: 340 EHLQLFSIWDSNLED 354
             L      D+ + D
Sbjct: 173 SKLTTLKADDNKISD 187

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 4e-12
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 18/111 (16%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
           +   +   +IQ +P +P  P  QTL L   H+  I    F +LP++  + +S++  L +L
Sbjct: 14  EDFRVTCKDIQRIPSLP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 225 PVGI-SSLVSLHHLDLSSTKV---------RGLPQELKALVLRMLHCGSNH 265
                 +L  + H+++ +T+          + LP       L+ L   +  
Sbjct: 72  ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL------LKFLGIFNTG 116

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 10/98 (10%)

Query: 172 NEIQSLPQ---IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI 228
             + S+P       C    TL L  N    +    F +   L  + L+ N YLT +    
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDA 199

Query: 229 -SSLVS-LHHLDLSSTKVRGLP----QELKALVLRMLH 260
              + S    LD+S T V  LP    + LK L+ R   
Sbjct: 200 FGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 11/111 (9%)

Query: 165 KRISLMENEIQSLPQIPT-----CPRLQTLLLEYNHIEEI-TESFFQSLPSLRVLNLSVN 218
             I +     ++L  I        P L+ L +    ++     +   S     +L ++ N
Sbjct: 83  THIEIRNT--RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDN 140

Query: 219 HYLTELPVGI-SSLVS-LHHLDLSSTKVRGLPQE-LKALVLRMLHCGSNHW 266
            Y+T +PV     L +    L L +     +         L  ++   N +
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKY 191

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 40/206 (19%), Positives = 69/206 (33%), Gaps = 23/206 (11%)

Query: 164 VKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
           ++ + L    +  LP  +     L+ L+L  N  E + +    + PSL  L++  N    
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339

Query: 223 ELPVG-ISSLVSLHHLDLSSTKVRGLPQELKALV----LRMLHCGSNHWPIAEEGNVLSD 277
           EL  G + +L +L  LDLS   +         L     L+ L+   N             
Sbjct: 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE---------PLS 390

Query: 278 DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCN--SLPLNLLH 335
                 KE   LE L+L    L+       F     L    + L++           L  
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL----KVLNLSHSLLDISSEQLFD 446

Query: 336 LANMEHLQLFSIWDSNLEDWNVDCAG 361
              +  LQ  ++  ++    N+    
Sbjct: 447 --GLPALQHLNLQGNHFPKGNIQKTN 470

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 168 SLMENEIQSLPQIP----TCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE 223
           +  + + + +            ++++ L+ ++   I+ + F     L+ L+L+  H L+E
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSE 292

Query: 224 LPVGISSLVSLHHLDLSSTKVRGLPQE 250
           LP G+  L +L  L LS+ K   L Q 
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQI 319

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 32/188 (17%), Positives = 75/188 (39%), Gaps = 19/188 (10%)

Query: 165 KRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH-YL 221
           + + L  N I S+   +     +L+ L  + N I  +++    SL     L+L++N   +
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 222 TELPVGISSLVSLHHLDLSSTKVRGL-PQELKALVLRMLHCGSNHWPIAEEGNVLSDDAE 280
             +  G         L+   T+   +  + LK   ++ L  G+             D + 
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE------DMDDEDISP 245

Query: 281 SLMKEIHCLEQLNLIALSLRGSR--GVENFLKFPKLQNITQALHIKDCN--SLPLNLLHL 336
           ++ +    L ++++ +++L+      + +   F     + Q L +   +   LP  L+ L
Sbjct: 246 AVFEG---LCEMSVESINLQKHYFFNISSNT-FHCFSGL-QELDLTATHLSELPSGLVGL 300

Query: 337 ANMEHLQL 344
           + ++ L L
Sbjct: 301 STLKKLVL 308

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 165 KRISLMENEIQSLPQIPT-----CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH 219
           + ++L  N         T       RL+ L+L +  +  I +  F SL  +  ++LS N 
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 220 YLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV--LRMLHCGSNHW 266
            LT   +   S +   +L+L+S  +  +   L  ++   R ++   N  
Sbjct: 512 -LTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 165 KRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE 223
           K  +     +  +P  +P     + L   +N +  I  + F  L +L  L+L+    +  
Sbjct: 15  KTYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYW 71

Query: 224 LPVG-ISSLVSLHHLDLSSTKVRGLPQEL 251
           +      S   L  L L++  +  + +  
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETA 100

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 165 KRISLMENEIQSLPQIPT---CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH-- 219
           + + L    ++             L+ L L ++ ++  +E  F  LP+L+ LNL  NH  
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 220 YLTELPVG-ISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNH 265
                    + +L  L  L LS   +  + Q    +L  +  +    N 
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 35/186 (18%), Positives = 62/186 (33%), Gaps = 22/186 (11%)

Query: 166 RISLMENEIQSLPQIP--TCPRLQTLLLEYNHIEEITESFFQSLP--SLRVLNLSVNHYL 221
                +N +     +   T   L     E    E+I+ + F+ L   S+  +NL  ++  
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-F 266

Query: 222 TELPVGI-SSLVSLHHLDLSSTKVRGLPQELKAL-VLRMLHCGSNHWPIAEEGNVLSDDA 279
             +          L  LDL++T +  LP  L  L  L+ L   +N            +  
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK---------FENLC 317

Query: 280 ESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCN--SLPLNLLHLA 337
           +        L  L++   + R   G         L+     L +   +  +     L L 
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE----LDLSHDDIETSDCCNLQLR 373

Query: 338 NMEHLQ 343
           N+ HLQ
Sbjct: 374 NLSHLQ 379

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.7 bits (158), Expect = 5e-12
 Identities = 46/207 (22%), Positives = 82/207 (39%), Gaps = 32/207 (15%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           +TDA    E   + +I    ++I+S+  I   P +  L L  N + +I      +L +L 
Sbjct: 36  VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KPLANLKNLG 93

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAE 270
            L L  N  + +L   +  L  L  L L    +  +   L  L  L  L+ G+N      
Sbjct: 94  WLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK----- 145

Query: 271 EGNVLSDDAESLMKEIHCLEQL-NLIALSLRGSR--GVENFLKFPKLQNITQALHIKDCN 327
                       + +I  L +L  L  LSL  ++   +       KLQN    L++   N
Sbjct: 146 ------------ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN----LYLSK-N 188

Query: 328 SLPLNLLHLANMEHLQLFSIWDSNLED 354
            +  +L  LA +++L +  ++     +
Sbjct: 189 HIS-DLRALAGLKNLDVLELFSQECLN 214

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 37/199 (18%), Positives = 75/199 (37%), Gaps = 33/199 (16%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           +      + +    + +L +  +           +  ++   + I+ +     Q LP++ 
Sbjct: 14  IKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVT 71

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAE 270
            L L+ N  LT++   +++L +L  L L   KV+ L   LK L  L+ L    N      
Sbjct: 72  KLFLNGNK-LTDIK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNG----- 123

Query: 271 EGNVLSDDAESLMKEIHCLEQL-NLIALSLRGSR--GVENFLKFPKLQNITQALHIKDCN 327
                       + +I+ L  L  L +L L  ++   +    +  KL      L ++D  
Sbjct: 124 ------------ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDT----LSLEDNQ 167

Query: 328 --SLPLNLLHLANMEHLQL 344
              +   L  L  +++L L
Sbjct: 168 ISDIV-PLAGLTKLQNLYL 185

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 31/190 (16%), Positives = 70/190 (36%), Gaps = 32/190 (16%)

Query: 169 LMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI 228
            +   I+ +             L+   + +        L S+  +  + +  +  +  GI
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSD-IKSVQ-GI 64

Query: 229 SSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIH 287
             L ++  L L+  K+  +   L  L  L  L    N                  +K++ 
Sbjct: 65  QYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENK-----------------VKDLS 106

Query: 288 CLEQL-NLIALSLRGSR--GVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQL 344
            L+ L  L +LSL  +    +   +  P+L++    L++ + N +  ++  L+ +  L  
Sbjct: 107 SLKDLKKLKSLSLEHNGISDINGLVHLPQLES----LYLGN-NKIT-DITVLSRLTKLDT 160

Query: 345 FSIWDSNLED 354
            S+ D+ + D
Sbjct: 161 LSLEDNQISD 170

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 151 GLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSL 210
            +     I+    V ++ L  N++  +  +     L  L L+ N ++++  S  + L  L
Sbjct: 57  DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--SSLKDLKKL 114

Query: 211 RVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSN 264
           + L+L  N  ++++  G+  L  L  L L + K+  +   L  L  L  L    N
Sbjct: 115 KSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN 166

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 151 GLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSL 210
            +TD   +     +  +SL +N+I  +  +    +LQ L L  NHI ++       L +L
Sbjct: 145 KITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNL 202

Query: 211 RVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKV 244
            VL L     L +     S+LV  + +  +   +
Sbjct: 203 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 16/116 (13%)

Query: 165 KRISLMENEIQSLPQIPT----CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220
           +R+ L    ++++   P+       L  L L  N+I  I +   + L  L +L+L  N+ 
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN- 515

Query: 221 LTELPVG---------ISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNH 265
           L  L            +  L  LH L+L S     +P E  K L  L+++  G N+
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 24/192 (12%)

Query: 165 KRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
           K ++L  NE+  L       C  L  L L  N I++I  + F    +L  L+LS N  L+
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LS 134

Query: 223 ELPVG-ISSLVSLHHLDLSSTKVRGLPQELKALV----LRMLHCGSNHWPIAEEGNVLSD 277
              +G    L +L  L LS+ K++ L  E   +     L+ L   SN          + +
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ---------IKE 185

Query: 278 DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCN-----SLPLN 332
            +      I  L  L L  + L  S   E         +I   L + +       +    
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSL-TEKLCLELANTSIRN-LSLSNSQLSTTSNTTFL 243

Query: 333 LLHLANMEHLQL 344
            L   N+  L L
Sbjct: 244 GLKWTNLTMLDL 255

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 2/96 (2%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
            R+    N    +  +     L  L LE N  +EI    F+ L  L++++L +N+ L  L
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN-LNTL 575

Query: 225 PVGI-SSLVSLHHLDLSSTKVRGLPQELKALVLRML 259
           P  + ++ VSL  L+L    +  + +++     R L
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 165 KRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
             + +  N I  L        P L+ L L++N + ++++  F    +L  L+L  N    
Sbjct: 52  TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111

Query: 223 ELPVGISSLVSLHHLDLSSTKVRGLP 248
                     +L  LDLS   +    
Sbjct: 112 IKNNPFVKQKNLITLDLSHNGLSSTK 137

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 165 KRISLMENEI-QSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH-- 219
           + + L  NEI Q L          +  + L YN   ++T + F  +PSL+ L L      
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 220 YLTELPVGISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNH 265
            +   P     L +L  LDLS+  +  +  + L+ L  L +L    N+
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 5/104 (4%)

Query: 165 KRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE 223
           +       ++  +P  +PT   +  L L +N +  +  + F     L  L++  N     
Sbjct: 7   EVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 224 LPVGISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNH 265
            P     L  L  L+L   ++  L  +       L  LH  SN 
Sbjct: 65  EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 165 KRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
             ++L  N    +P         L+ + L  N++  +  S F +  SL+ LNL  N  +T
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL-IT 597

Query: 223 ELPVGI--SSLVSLHHLDLS 240
            +   +   +  +L  LD+ 
Sbjct: 598 SVEKKVFGPAFRNLTELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 165 KRISLMENEIQSLPQIP----TCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220
           + +SL  +++ +             L  L L YN++  +    F  LP L    L  N+ 
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284

Query: 221 LTELPVGISSLVSLHHLDLSS 241
                  +  L ++ +L+L  
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKR 305

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 6/132 (4%)

Query: 168 SLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSL--PSLRVLNLSVNHYLTELP 225
            L  +  + L        ++ L L  + +   + + F  L   +L +L+LS N  L  + 
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVG 264

Query: 226 VG-ISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESL 282
               + L  L +  L    ++ L    L  L  +R L+   +    +     L    +  
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324

Query: 283 MKEIHCLEQLNL 294
            + + CLE LN+
Sbjct: 325 FQWLKCLEHLNM 336

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 184 PRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSST 242
             L  L L  N I +I    F  L  L VL+L +N    EL       L ++  + LS  
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 243 KVRGLP-------QELKALVLR 257
           K   L          L+ L+LR
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLR 462

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 33/168 (19%), Positives = 64/168 (38%), Gaps = 24/168 (14%)

Query: 185 RLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTK 243
             +     +  + ++ +       ++ VLNL+ N  L  LP    +    L  LD+    
Sbjct: 5   SHEVADCSHLKLTQVPDDLP---TNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNT 60

Query: 244 VRGL-PQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG 301
           +  L P+  + L  L++L+   N          LS  ++        L +L+L++ S++ 
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNE---------LSQLSDKTFAFCTNLTELHLMSNSIQK 111

Query: 302 SRGVENFLKFPKLQNITQALHIKDCN--SLPLNLL-HLANMEHLQLFS 346
            +    F+K   L      L +      S  L     L N++ L L +
Sbjct: 112 IKN-NPFVKQKNLIT----LDLSHNGLSSTKLGTQVQLENLQELLLSN 154

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 165 KRISLMENEIQSLPQIPT---CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
           + +    + ++ + +        +L  L + Y + +   +  F  L SL  L ++ N + 
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 222 TELPVGI-SSLVSLHHLDLSSTKVRGLPQEL 251
                 + ++  +L  LDLS  ++  +   +
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 183 CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSS 241
              L  L L    +E+I+   F +L  L++LN+S N+ L  L     + L SL  LD S 
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSF 530

Query: 242 TKVRGLPQELKALV--LRMLHCGSNHW 266
            ++      L+     L   +  +N  
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.7 bits (153), Expect = 6e-11
 Identities = 35/217 (16%), Positives = 76/217 (35%), Gaps = 29/217 (13%)

Query: 165 KRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
             + L  N IQS           L+ L+     +  +       L +L+ LN++ N  + 
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IH 141

Query: 223 ELPVG--ISSLVSLHHLDLSSTKVRGLP----QELKAL--VLRMLHCGSNHWPIAEEG-- 272
              +    S+L +L H+DLS   ++ +     Q L+    V   L    N     ++   
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

Query: 273 -------------NVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENF--LKFPKLQNI 317
                           S+  ++ ++ +  L    LI    +  R +E F       L ++
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 318 T-QALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE 353
           T     +   N    +++    + ++   S+   +++
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.7 bits (153), Expect = 6e-11
 Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 164 VKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
            K I L  N ++ L          LQ L L    IE I +  +  L  L  L L+ N  +
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-I 92

Query: 222 TELPVG-ISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNH 265
                G  S L SL +L    TK+  L    +  L+ L+ L+   N 
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 40/189 (21%), Positives = 66/189 (34%), Gaps = 30/189 (15%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
             +SL    I+ L  +P   + Q+L +    +++        LP L+ L L++N     +
Sbjct: 288 SAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNK--GSI 342

Query: 225 PVGISSLVSLHHLDLSSTKVRGLP----QELKALVLRMLHCGSNHWPIAEEGNVLSDDAE 280
                +L SL +LDLS   +         +L    LR L    N              A 
Sbjct: 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-------------AI 389

Query: 281 SLMKEIHCLEQLNLIALSLRGSR--GVENFLKFPKLQNITQALHIKDCN--SLPLNLL-H 335
            +      LE   L  L  + S    V  F  F  L+ +   L I   N       +   
Sbjct: 390 IMSANFMGLE--ELQHLDFQHSTLKRVTEFSAFLSLEKLLY-LDISYTNTKIDFDGIFLG 446

Query: 336 LANMEHLQL 344
           L ++  L++
Sbjct: 447 LTSLNTLKM 455

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 167 ISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
           + L + +++ +      T  RLQ L + +N++  +  S +  L SL  L+ S N  +   
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETS 536

Query: 225 PVGI-SSLVSLHHLDLSS 241
              +     SL   +L++
Sbjct: 537 KGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 165 KRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220
           + +++  N +  L          L TL   +N IE           SL   NL+ N  
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 27/192 (14%), Positives = 66/192 (34%), Gaps = 19/192 (9%)

Query: 168 SLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRV--LNLSVNHYLTELP 225
           ++M+  +Q+L  +     +     +  ++E    S  + L  + +    L+  +  ++  
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278

Query: 226 VGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGN-------VLSDD 278
           V    L ++  + L+   ++ L    K    + L             +        L+ +
Sbjct: 279 VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMN 338

Query: 279 AESLMKEIHCLEQLNLIALS---LRG-SRGVENFLKFPKLQNITQALHIKDCN--SLPLN 332
             S+  +   L  L+ + LS   L        + L    L++    L +       +  N
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH----LDLSFNGAIIMSAN 394

Query: 333 LLHLANMEHLQL 344
            + L  ++HL  
Sbjct: 395 FMGLEELQHLDF 406

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.9 bits (158), Expect = 7e-12
 Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 18/178 (10%)

Query: 164 VKRISLMENEIQSLPQIPTC---PRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220
              + L  N +  L    T      L +LLL +NH+  I+   F  +P+LR L+LS NH 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH- 99

Query: 221 LTELPVGI-SSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSD 277
           L  L   + S L +L  L L +  +  + +   + +  L+ L+   N   I+        
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ--ISR----FPV 153

Query: 278 DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALH----IKDCNSLPL 331
           +      ++  L  L+L +  L+    + +  K P        LH      DC    L
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQL 210

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 3e-09
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 7/97 (7%)

Query: 175 QSLPQIPTC--PRLQTLLLEYNHIEEI-TESFFQSLPSLRVLNLSVNHYLTELPVGI-SS 230
           Q LP +P         L L +N++  +  E     L +L  L LS NH L  +       
Sbjct: 28  QQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVP 86

Query: 231 LVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNH 265
           + +L +LDLSS  +  L +     L  L +L   +NH
Sbjct: 87  VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.2 bits (159), Expect = 9e-12
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 165 KRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE 223
            ++  +   ++ +P  I      + L L  N I+ I  + F+ L  L +L LS NH +  
Sbjct: 46  SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRT 102

Query: 224 LPVGI-SSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNH 265
           + +G  + L +L+ L+L   ++  +P      L  L+ L   +N 
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP 147

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 32/204 (15%)

Query: 165 KRISLMENEIQSLPQIPTC----PRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220
             + L +N + ++P          +L+ L L  N IE I    F  +PSLR L+L     
Sbjct: 115 NTLELFDNRLTTIP--NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172

Query: 221 LTELPVGI-SSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDA 279
           L+ +  G    L +L +L+L+   +R +P     + L  L    N   ++     +   +
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN--HLS----AIRPGS 226

Query: 280 ESLMKEIHCLEQLNLIALSLRG-SRGVENFLKFPKLQNITQALHIKDCN--SLPLNLL-H 335
              +     L++L +I   ++   R    F     L      +++   N   LP +L   
Sbjct: 227 FQGLMH---LQKLWMIQSQIQVIERNA--FDNLQSLVE----INLAHNNLTLLPHDLFTP 277

Query: 336 LANMEHLQLFSIWDSNLEDWNVDC 359
           L ++E + L      N   WN +C
Sbjct: 278 LHHLERIHL----HHN--PWNCNC 295

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 165 KRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
           + + L  N I+++          L TL L  N +  I    F  L  L+ L L  N  + 
Sbjct: 91  EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IE 149

Query: 223 ELPVGI-SSLVSLHHLDLSS 241
            +P    + + SL  LDL  
Sbjct: 150 SIPSYAFNRIPSLRRLDLGE 169

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
           + I    N ++ LP++   P L T+  + N ++ + +      PSL  LN+  N+ LT+L
Sbjct: 218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNY-LTDL 272

Query: 225 PVGISSLVSLHHLDLSSTKVRGLPQELKALVL 256
           P    SL  L   +   + +  LP  L  L  
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPPNLYYLNA 304

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 45/198 (22%), Positives = 78/198 (39%), Gaps = 30/198 (15%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           L   P+++    +K I +  N ++ LP +P  P L+ +    N +EE+ E   Q+LP L 
Sbjct: 143 LEKLPELQNSSFLKIIDVDNNSLKKLPDLP--PSLEFIAAGNNQLEELPE--LQNLPFLT 198

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAE 270
            +    N  L +LP      +SL  +   +  +  LP EL+ L  L  ++  +N      
Sbjct: 199 AIYADNNS-LKKLP---DLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL----- 248

Query: 271 EGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNIT-QALHIKDCNSL 329
                    ++L      LE LN+    L     +        L  +          + L
Sbjct: 249 --------LKTLPDLPPSLEALNVRDNYLTDLPEL-----PQSLTFLDVSENIFSGLSEL 295

Query: 330 PLNLLHLANMEHLQLFSI 347
           P NL +L N    ++ S+
Sbjct: 296 PPNLYYL-NASSNEIRSL 312

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 160 EWEGVKRISLMENEIQSLPQIPTCP--RLQTLLLEYNHIEEITESFFQSLPSLRVLNLSV 217
           EWE        E    ++ ++  C   +   L L    +  + E      P L  L  S 
Sbjct: 45  EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL----PPHLESLVASC 100

Query: 218 NHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLR 257
           N  LTELP    SL SL   + +   +  LP  L+ L + 
Sbjct: 101 NS-LTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVS 139

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 18/102 (17%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQ---------------SLPS 209
           +R+    N +  +P++P    L+ L +EYN + E  +                      +
Sbjct: 340 ERLIASFNHLAEVPELPQ--NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQN 397

Query: 210 LRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQEL 251
           L+ L++  N  L E P    S+  L               E 
Sbjct: 398 LKQLHVETNP-LREFPDIPESVEDLRMNSERVVDPYEFAHET 438

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 26/182 (14%), Positives = 57/182 (31%), Gaps = 41/182 (22%)

Query: 178 PQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLV----- 232
           P+  +   LQ  L   +++ E+       + S      + + +    P G          
Sbjct: 5   PRNVSNTFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63

Query: 233 --------SLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDAESLMK 284
                     H L+L++  +  LP+      L  L    N          L+     L +
Sbjct: 64  RLRDCLDRQAHELELNNLGLSSLPELPPH--LESLVASCNS---------LT----ELPE 108

Query: 285 EIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCN--SLPLNLLHLANMEHL 342
               L+ L +   +L+             L  + + L + +     LP  L + + ++ +
Sbjct: 109 LPQSLKSLLVDNNNLK---------ALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKII 158

Query: 343 QL 344
            +
Sbjct: 159 DV 160

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 10/102 (9%)

Query: 165 KRISLMENEIQSLPQIPT-CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE 223
             + L  N++QSLP +    P L  L + +N +  +     + L  L+ L L  N  L  
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKT 138

Query: 224 LPVGI-SSLVSLHHLDLSSTKVRGLP-------QELKALVLR 257
           LP G+ +    L  L L++  +  LP       + L  L+L+
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
            +++L   E+  L    T P L TL L +N ++ +     Q+LP+L VL++S N  LT L
Sbjct: 58  TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNR-LTSL 115

Query: 225 PVGI-SSLVSLHHLDLSSTKVRGLP 248
           P+G    L  L  L L   +++ LP
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLP 140

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.2 bits (141), Expect = 8e-10
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 172 NEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISS 230
             + +LP  +P       L L  N +   + +       L  LNL     LT+L V   +
Sbjct: 20  RNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GT 75

Query: 231 LVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNH 265
           L  L  LDLS  +++ LP   + L  L +L    N 
Sbjct: 76  LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 165 KRISLMENEIQSLPQ---IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
           + + L  NE+++LP     PT P+L+ L L  N++ E+       L +L  L L  N  L
Sbjct: 127 QELYLKGNELKTLPPGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-L 184

Query: 222 TELPVGISSLVSLHHLDLSS 241
             +P G      L    L  
Sbjct: 185 YTIPKGFFGSHLLPFAFLHG 204

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 160 EWEGVKRISLMENEIQSLP-QIPT-CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSV 217
           E  GVK   L +++I +L   + +    L+ L L  N I +I ++ F  L  L  LNLS 
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332

Query: 218 NHYLTELPVGI-SSLVSLHHLDLSSTKVRGLP-------QELKALVLR 257
           N  L  +   +  +L  L  LDLS   +R L          LK L L 
Sbjct: 333 NF-LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 10/109 (9%)

Query: 165 KRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
           ++++L +NEI  +          L  L L  N +  I    F++L  L VL+LS NH + 
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IR 360

Query: 223 ELPVGI-SSLVSLHHLDLSSTKVRGLPQE----LKALVLRMLHCGSNHW 266
            L       L +L  L L + +++ +P      L +  L+ +   +N W
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS--LQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 176 SLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI-SSLVSL 234
            +P++P    +  + L  N I E+ E+ F  L  L+ L +        +       L SL
Sbjct: 24  QVPELPA--HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81

Query: 235 HHLDLSSTKVRGLP 248
             L L   +   L 
Sbjct: 82  IILKLDYNQFLQLE 95

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 164 VKRISLMENEIQSLPQIP--TCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
           + +++L +N + S+         +L+ L L YNHI  + +  F  LP+L+ L L  N  L
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-L 383

Query: 222 TELPVGI-SSLVSLHHLDLSS 241
             +P GI   L SL  + L +
Sbjct: 384 KSVPDGIFDRLTSLQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 36/232 (15%), Positives = 62/232 (26%), Gaps = 44/232 (18%)

Query: 151 GLTDAPKIEEWEGVKRISLMENEIQSLP------------------QIPTC--------- 183
           GL   P++     V  + L  N I  L                                 
Sbjct: 21  GLHQVPELPAH--VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL 78

Query: 184 PRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH-YLTELPVGI-SSLVSLHHLDLSS 241
             L  L L+YN   ++    F  L +L VL L+  +     L       L SL  L L  
Sbjct: 79  SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

Query: 242 TKVRGLP-----QELKALVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIA 296
             ++ +        ++     +L    N      E ++L+   +           L  + 
Sbjct: 139 NNIKKIQPASFFLNMRR--FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196

Query: 297 LSLRGSRGVENFLKFPKLQNITQALHIKDCNSLP----LNLLHLANMEHLQL 344
               G     N  K   +  +   L              + +    ++ L L
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLD--LSGNGFKESMAKRFFDAIAGTKIQSLIL 246

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 28/201 (13%)

Query: 157 KIEEWEGVKRISLMENEIQSLP---QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVL 213
           +       +  +     +++     +  T P    L L    + +  +  F+ L  L+ +
Sbjct: 51  RQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHM 109

Query: 214 NLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEG 272
            +     L ELP  +     L  L L+   +R LP  + +L  LR L   +         
Sbjct: 110 TIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC-------- 160

Query: 273 NVLSDDAESL--MKEIHCLEQL-NLIALSLRGSRGVENFLKFP----KLQNITQALHIKD 325
             L++  E L         + L NL +L L  +         P     LQN+   L I++
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTG----IRSLPASIANLQNLKS-LKIRN 215

Query: 326 CN--SLPLNLLHLANMEHLQL 344
               +L   + HL  +E L L
Sbjct: 216 SPLSALGPAIHHLPKLEELDL 236

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.4 bits (142), Expect = 7e-10
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 4/117 (3%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSL 210
              + + +    ++ + L    I+SLP  I     L++L +  + +  +  +    LP L
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH-LPKL 231

Query: 211 RVLNLSVNHYLTELPVGISSLVSLHHLDLSS-TKVRGLPQELKALV-LRMLHCGSNH 265
             L+L     L   P        L  L L   + +  LP ++  L  L  L      
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 172 NEIQSLPQ-IPTCPRLQTL-LLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIS 229
             +++ P        L+ L L + +++  +     + L  L  L+L     L+ LP  I+
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLPSLIA 298

Query: 230 SLVSLHHLDLSSTKVRGLPQEL 251
            L +   + +       L Q  
Sbjct: 299 QLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 19/148 (12%), Positives = 36/148 (24%), Gaps = 26/148 (17%)

Query: 203 FFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCG 262
                     L    +  L      +S     ++ D +               +      
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 263 SNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPK----LQNIT 318
           +                ++    +    Q   +AL LR         +FP     L ++ 
Sbjct: 67  AL---------------KATADLLEDATQPGRVALELRSVP----LPQFPDQAFRLSHLQ 107

Query: 319 QALHIKDCN--SLPLNLLHLANMEHLQL 344
             + I       LP  +   A +E L L
Sbjct: 108 H-MTIDAAGLMELPDTMQQFAGLETLTL 134

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
           + +    N I  +         + + L  N I  + +        ++ L+L +N  +  +
Sbjct: 102 ETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTV 159

Query: 225 PVG--ISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNH 265
                 +S  +L HL+L    +  +  ++    L+ L   SN 
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK 202

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 165 KRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
           K   + ++ ++        +   ++ L L  N + +I+ +       L +LNLS N  L 
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LY 71

Query: 223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNH 265
           E    + SL +L  LDL++  V+ L     +  +  LH  +N+
Sbjct: 72  ETL-DLESLSTLRTLDLNNNYVQELLV-GPS--IETLHAANNN 110

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 184 PRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSST 242
            R +   +  + +++   S  QS  +++ L+LS N  L+++    ++    L  L+LSS 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN 68

Query: 243 KVRGLPQELKALV-LRMLHCGSNH 265
            +     +L++L  LR L   +N+
Sbjct: 69  VLYETL-DLESLSTLRTLDLNNNY 91

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 165 KRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEIT-ESFFQSLPSLRVLNLSVNHYLT 222
             ISL  N++  + + +     L+   L  N     T   FF     ++ +       LT
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNH 265
                  ++ +L H    +     LP        R++  G +H
Sbjct: 277 GQNEEECTVPTLGH--YGAYCCEDLP---APFADRLIALGHHH 314

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 41/198 (20%), Positives = 65/198 (32%), Gaps = 35/198 (17%)

Query: 165 KRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
           K + L  N ++ L      + P LQ L L    I+ I +  +QSL  L  L L+ N  + 
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQ 89

Query: 223 ELPVGI-SSLVSLHHLDLSSTKVRGLP----QELKALVLRMLHCGSNHWPIAEEGNVLSD 277
            L +G  S L SL  L    T +  L       LK   L+ L+   N     +     S+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT--LKELNVAHNLIQSFKLPEYFSN 147

Query: 278 DAESLMKEIHCLEQLNLIALSLRG------SRGVENFLKFPKLQNITQALHIKDCN---S 328
                      L  L    L L                   ++  +  +L +   N    
Sbjct: 148 -----------LTNLE--HLDLSSNKIQSIYCTD--LRVLHQMPLLNLSLDL-SLNPMNF 191

Query: 329 LPLNLLHLANMEHLQLFS 346
           +         ++ L L +
Sbjct: 192 IQPGAFKEIRLKELALDT 209

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 176 SLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI-SSLVS 233
            +P  +P     + L L +N +  +    F S P L+VL+LS    +  +  G   SL  
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSH 77

Query: 234 LHHLDLSSTKVRGLP 248
           L  L L+   ++ L 
Sbjct: 78  LSTLILTGNPIQSLA 92

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 14/113 (12%)

Query: 165 KRISLMENEIQSLPQIPTC---PRLQTLLLEYNHIEEITESFFQSLPSLRV----LNLSV 217
           K +++  N IQS            L+ L L  N I+ I  +  + L  + +    L+LS+
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 218 NHYLTELPVGISSLVSLHHLDLSSTKVRGLPQE----LKALVLRMLHCGSNHW 266
           N  +  +  G    + L  L L + +++ +P      L +  L+ +   +N W
Sbjct: 187 NP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS--LQKIWLHTNPW 236

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 26/195 (13%)

Query: 169 LMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG 227
             +N +  +P+ +    +   L +  N+I E+  S   SL  LR+L +S N  +  L + 
Sbjct: 7   RSKNGLIHVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDIS 63

Query: 228 I-SSLVSLHHLDLSSTKVRGLP-QELKALVLRMLHCGSNHWPIAEEGNVLSDDAESLMKE 285
           +      L +LDLS  K+  +         L+ L    N +          +        
Sbjct: 64  VFKFNQELEYLDLSHNKLVKISCHPTVN--LKHLDLSFNAFDALPICKEFGN-------- 113

Query: 286 IHCLEQLNLIALS---LRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHL 342
              + QL  + LS   L  S    + L    L      L + +      +   L +    
Sbjct: 114 ---MSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166

Query: 343 QLFSIWDSNLEDWNV 357
            L  ++ +N E   +
Sbjct: 167 SLHIVFPTNKEFHFI 181

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.0 bits (135), Expect = 7e-09
 Identities = 37/192 (19%), Positives = 74/192 (38%), Gaps = 25/192 (13%)

Query: 164 VKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
              +++ +N I  L    I +  +L+ L++ +N I+ +  S F+    L  L+LS N  L
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-L 81

Query: 222 TELPVGISSLVSLHHLDLSSTKVRGLPQ--ELKALV-LRMLHCGSNHWPIAEEGNVLSDD 278
            ++       V+L HLDLS      LP   E   +  L+ L   +         ++    
Sbjct: 82  VKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT--------HLEKSS 131

Query: 279 AESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLL---H 335
              +      L    ++ +        E+          T++LHI    +   + +    
Sbjct: 132 VLPIAH----LNISKVLLVLGETYGEKEDPEGLQDFN--TESLHIVFPTNKEFHFILDVS 185

Query: 336 LANMEHLQLFSI 347
           +  + +L+L +I
Sbjct: 186 VKTVANLELSNI 197

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 5e-07
 Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 29/169 (17%)

Query: 186 LQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI-SSLVSLHHLDLSSTKV 244
           +       +    +       +     L+ S N  LT+        L  L  L L   ++
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQL 360

Query: 245 RGLPQELKALV----LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLR 300
           + L +  +       L+ L    N     E+    S             + L  + +S  
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS-----------WTKSLLSLNMS-- 407

Query: 301 GSRGVENFLKFPKLQNITQALHIKDCN-----SLPLNLLHLANMEHLQL 344
                 N L     + +   + + D +     S+P  ++ L  ++ L +
Sbjct: 408 -----SNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNV 451

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 23/108 (21%), Positives = 53/108 (49%), Gaps = 10/108 (9%)

Query: 165 KRISLMENEIQSLPQIPTC---PRLQTLLLEYNHIEEITESFFQSLPS-LRVLNLSVNHY 220
           +++ + +N +    +   C     L +L +  N +   T++ F+ LP  ++VL+L  N  
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL---TDTIFRCLPPRIKVLDLHSNK- 432

Query: 221 LTELPVGISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHW 266
           +  +P  +  L +L  L+++S +++ +P      L  L+ +   +N W
Sbjct: 433 IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 9/105 (8%)

Query: 168 SLMENEIQSLPQIP--TCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP 225
           +   +  + +  +          L    N + +        L  L  L L +N  L EL 
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELS 364

Query: 226 VGIS---SLVSLHHLDLSSTKVRGLPQEL---KALVLRMLHCGSN 264
                   + SL  LD+S   V    ++        L  L+  SN
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 29/192 (15%), Positives = 62/192 (32%), Gaps = 11/192 (5%)

Query: 165 KRISLMENEIQSLPQIPT---CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
           K + L  N   +LP         +L+ L L   H+E+ +      L   +VL +    Y 
Sbjct: 93  KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

Query: 222 TELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDAES 281
            +          L   +  S  +     +    +L +      +  ++    VL D+  S
Sbjct: 153 EK-----EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207

Query: 282 LMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEH 341
               I    Q N    +L  +     +  F ++  +     +       ++ + L     
Sbjct: 208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY---FSISNVKLQGQLD 264

Query: 342 LQLFSIWDSNLE 353
            + F    ++L+
Sbjct: 265 FRDFDYSGTSLK 276

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSL 210
           LTD         +K + L  N+I+S+P+ +     LQ L +  N ++ + +  F  L SL
Sbjct: 411 LTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSL 470

Query: 211 RVLNLSVN 218
           + + L  N
Sbjct: 471 QKIWLHTN 478

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 37/187 (19%), Positives = 64/187 (34%), Gaps = 15/187 (8%)

Query: 164 VKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
            K + L  N ++ L      + P LQ L L    I+ I +  +QSL  L  L L+ N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 222 TELPVGISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWPIAEEGNVLSDDA 279
           +      S L SL  L    T +  L    +  L  L+ L+   N         + S   
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN--------LIQSFKL 141

Query: 280 ESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCN--SLPLNLLHLA 337
                 +  LE L+L +  ++      +     ++  +  +L +       +        
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 338 NMEHLQL 344
            +  L L
Sbjct: 201 RLHKLTL 207

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 38/201 (18%), Positives = 70/201 (34%), Gaps = 24/201 (11%)

Query: 168 SLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV 226
             ME     +P  +P     + L L +N +  +    F S P L+VL+LS     T    
Sbjct: 13  QCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 227 GISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMK 284
              SL  L  L L+   ++ L       L  L+ L     +         L+      + 
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN---------LASLENFPIG 121

Query: 285 EIHCLEQLNLIALSLRGSRGVENFLKFPKLQ-------NIT--QALHIKDCNSLPLNLLH 335
            +  L++LN+    ++  +  E F     L+        I       ++  + +PL  L 
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 336 LANMEHLQLFSIWDSNLEDWN 356
           L ++    +  I     ++  
Sbjct: 182 L-DLSLNPMNFIQPGAFKEIR 201

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 23/206 (11%)

Query: 165 KRISLMENEIQSLP---QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRV----LNLSV 217
           K +++  N IQS            L+ L L  N I+ I  +  + L  + +    L+LS+
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 218 NHYLTELPVGISSLVSLHHLDLSSTKVRG--LPQELKALV-LRMLHCGSNHWPIAEEGNV 274
           N  +  +  G    + LH L L +       +   ++ L  L +            EGN+
Sbjct: 187 NP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE--FRNEGNL 243

Query: 275 LSDDAESLMKEIHC-LEQLNLIALSLRGSRGVENFLKFPKLQ-------NITQALHIKDC 326
              D  +L    +  +E+  L  L       ++ F     +         I +       
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 327 NSLPLNLLHLANMEHLQLFSIWDSNL 352
                  L L N +  Q  ++   +L
Sbjct: 304 FG--WQHLELVNCKFGQFPTLKLKSL 327

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 165 KRISLMENEIQSLPQIPT---CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
           + +    + ++ + +         L  L + + H        F  L SL VL ++ N + 
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 222 TELPVGI-SSLVSLHHLDLSSTKVRGLPQEL 251
                 I + L +L  LDLS  ++  L    
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 183 CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSS 241
              L  L L    +E+++ + F SL SL+VLN+S N+    L       L SL  LD S 
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSL 527

Query: 242 TKVRGL-PQELKALV--LRMLHCGSNHW 266
             +     QEL+     L  L+   N +
Sbjct: 528 NHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 167 ISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
           + L + +++ L      +   LQ L + +N+   +    ++ L SL+VL+ S+NH +   
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTS 533

Query: 225 PVGI--SSLVSLHHLDLSS 241
                     SL  L+L+ 
Sbjct: 534 KKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 26/124 (20%), Positives = 37/124 (29%), Gaps = 22/124 (17%)

Query: 164 VKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQS----------------- 206
           V   SL+   I+ +         Q L L      +      +S                 
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343

Query: 207 --LPSLRVLNLSVNH--YLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHC 261
             LPSL  L+LS N   +            SL +LDLS   V  +      L  L  L  
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403

Query: 262 GSNH 265
             ++
Sbjct: 404 QHSN 407

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 37/192 (19%), Positives = 61/192 (31%), Gaps = 34/192 (17%)

Query: 168 SLMENEIQSLPQIP-----TCPRLQTLLLEYNHIEEITESF------FQSLPSLRVLNLS 216
            L+  E ++   +          L  L +E   +  +          F  L ++   +L 
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 217 VNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLS 276
               +  +    S      HL+L + K    P  LK   L+ L   SN    A     L 
Sbjct: 291 SVT-IERVK-DFSYNFGWQHLELVNCKFGQFP-TLKLKSLKRLTFTSNKGGNAFSEVDLP 347

Query: 277 DDAESLMKEIHCLEQLNL--IALSLRGSRGVENFLKFPKLQNITQALHIKDCN--SLPLN 332
                       LE L+L    LS +G    ++      L+     L +      ++  N
Sbjct: 348 -----------SLEFLDLSRNGLSFKGC-CSQSDFGTTSLKY----LDLSFNGVITMSSN 391

Query: 333 LLHLANMEHLQL 344
            L L  +EHL  
Sbjct: 392 FLGLEQLEHLDF 403

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.2 bits (149), Expect = 6e-11
 Identities = 30/195 (15%), Positives = 70/195 (35%), Gaps = 30/195 (15%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           +             + +L +  +  L        +Q    + ++I+ +  +  Q   +L+
Sbjct: 9   INQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL--AGMQFFTNLK 66

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEE 271
            L+LS N  +++L   +  L  L  L ++  +++ L   + +  L  L   +N       
Sbjct: 67  ELHLSHNQ-ISDLS-PLKDLTKLEELSVNRNRLKNLN-GIPSACLSRLFLDNNE------ 117

Query: 272 GNVLSDDAESLMKEIHCLEQL-NLIALSLRGSR--GVENFLKFPKLQNIT----QALHIK 324
                      +++   L  L NL  LS+R ++   +       KL+ +     +  +  
Sbjct: 118 -----------LRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTG 166

Query: 325 DCNSLP-LNLLHLAN 338
               L  +N + L  
Sbjct: 167 GLTRLKKVNWIDLTG 181

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 45/198 (22%), Positives = 70/198 (35%), Gaps = 34/198 (17%)

Query: 151 GLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSL 210
            +TD    +E  GV+  +   + IQSL  +     L+ L L +N I ++  S  + L  L
Sbjct: 30  SVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL--SPLKDLTKL 87

Query: 211 RVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIA 269
             L+++ N  L  L  GI S   L  L L + ++R     L  L  L +L   +N     
Sbjct: 88  EELSVNRNR-LKNLN-GIPSA-CLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNK---- 139

Query: 270 EEGNVLSDDAESLMKEIHCLEQL-NLIALSLRGSR--GVENFLKFPKLQNITQALHIKDC 326
                        +K I  L  L  L  L L G+         +  K+  I       D 
Sbjct: 140 -------------LKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWI-------DL 179

Query: 327 NSLPLNLLHLANMEHLQL 344
                    +     L +
Sbjct: 180 TGQKCVNEPVKYQPELYI 197

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.7 bits (140), Expect = 8e-10
 Identities = 29/189 (15%), Positives = 64/189 (33%), Gaps = 31/189 (16%)

Query: 169 LMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI 228
                I  +   P         L    + ++     + L  ++  N   ++ +  L  G+
Sbjct: 4   QRPTPINQVFPDPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSN-IQSLA-GM 59

Query: 229 SSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIH 287
               +L  L LS  ++  L   LK L  L  L    N                  +K ++
Sbjct: 60  QFFTNLKELHLSHNQISDLS-PLKDLTKLEELSVNRNR-----------------LKNLN 101

Query: 288 CLEQLNLIALSLRGSR--GVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLF 345
            +    L  L L  +     ++ +    L+     L I++ N L  +++ L  +  L++ 
Sbjct: 102 GIPSACLSRLFLDNNELRDTDSLIHLKNLEI----LSIRN-NKL-KSIVMLGFLSKLEVL 155

Query: 346 SIWDSNLED 354
            +  + + +
Sbjct: 156 DLHGNEITN 164

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           L D   +   + ++ +S+  N+++S+  +    +L+ L L  N I          L  + 
Sbjct: 118 LRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN 175

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHL 237
            ++L+    + E       L   + +
Sbjct: 176 WIDLTGQKCVNEPVKYQPELYITNTV 201

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 7e-11
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 10/105 (9%)

Query: 156 PKIEEWEGVKRISLMENEIQSLP---QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRV 212
              +    +  I L  N++  L    +  T P L  + L YN   +          +L+ 
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN-SSTLKG 540

Query: 213 L------NLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQEL 251
                  +   N  L E P GI+   SL  L + S  +R + +++
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 9e-11
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 165 KRISLMENEIQSL-PQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE 223
             +  + N+++   P   +  +L +L L YN I EI  +F      +  L+ + N  L  
Sbjct: 333 GMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKY 391

Query: 224 LP--VGISSLVSLHHLDLSSTKVRGLPQE 250
           +P      S+  +  +D S  ++  +  +
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 10/101 (9%)

Query: 168 SLMENEIQSLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV 226
           S+       L         + ++ L  N I +  +  F +   L  +NL  N  LTE+P 
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPK 474

Query: 227 G--------ISSLVSLHHLDLSSTKVRGLPQELKALVLRML 259
                      +   L  +DL   K+  L  + +A  L  L
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 17/130 (13%), Positives = 47/130 (36%), Gaps = 30/130 (23%)

Query: 166 RISLMENEIQSLPQ-IPTCPRLQTLLLEYNHI--EEITESF-----------------FQ 205
           +I  + N I  + + +    +L+   +  +    E I E++                 + 
Sbjct: 187 QIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD 246

Query: 206 SLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV---------- 255
           +L  L  + +     LT+LP  + +L  +  ++++  +     Q                
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 256 LRMLHCGSNH 265
           +++++ G N+
Sbjct: 307 IQIIYIGYNN 316

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 22/177 (12%), Positives = 52/177 (29%), Gaps = 25/177 (14%)

Query: 174 IQSLPQIPTCPRLQTLLLEYNHIE--EITESFFQSLPSLRVLNLSVNHYLTELPVGISSL 231
           +     I      +       H +   +     +    L    ++ +     +       
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 232 VSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLE 290
           +    +   S  +  + + +  L  LR  + G++                  + E  C E
Sbjct: 183 LKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS----------------PFVAENIC-E 225

Query: 291 QLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCN---SLPLNLLHLANMEHLQL 344
                          E+ LK+  L+++T  + + +C     LP  L  L  M+ + +
Sbjct: 226 AWENENSEYAQQYKTED-LKWDNLKDLTD-VEVYNCPNLTKLPTFLKALPEMQLINV 280

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 23/189 (12%), Positives = 50/189 (26%), Gaps = 26/189 (13%)

Query: 183 CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH----YLTELPVGISSLVSLHHLD 238
             R+  L LE              L  L VL L  +          P GIS+ +S     
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 239 LSSTKVRGL------PQELKALVLRMLHCGSNHWPIAEEGNVLSDDAE---------SLM 283
                 +         ++   L+   ++       I +   +   D +          + 
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199

Query: 284 KEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQ 343
           K +  L +L    +         +      +    +  + +         L   N++ L 
Sbjct: 200 KAVMRLTKLRQFYMG-------NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT 252

Query: 344 LFSIWDSNL 352
              +++   
Sbjct: 253 DVEVYNCPN 261

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 176 SLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSL 234
             P+ I  CP L  L +  N I ++ E      P++ VL++  N  ++     +   +  
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIRKVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEA 613

Query: 235 HHLDLS 240
               L 
Sbjct: 614 GMYMLF 619

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 18/147 (12%), Positives = 40/147 (27%), Gaps = 20/147 (13%)

Query: 206 SLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRG-----LPQELKALV-LRML 259
           S   +  L+L        +P  I  L  L  L L S   +       P+ + A +     
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 260 HCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQ 319
                H     +   +              +  +LI   +      ++  K  ++     
Sbjct: 139 QKMRMH----YQKTFVD--------YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 320 ALHIKDCN--SLPLNLLHLANMEHLQL 344
            +     N   +   ++ L  +    +
Sbjct: 187 QIGQLSNNITFVSKAVMRLTKLRQFYM 213

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 164 VKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH--YL 221
           ++ +S +   + S+  +P   +L+ L L  N +    E   +  P+L  LNLS N    L
Sbjct: 44  LEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103

Query: 222 TELPVGISSLVSLHHLDLS 240
           + +   +  L +L  LDL 
Sbjct: 104 STIEP-LKKLENLKSLDLF 121

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 12/105 (11%)

Query: 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQI--PTCPRLQTLLLEYNHIEEIT 200
           +FL    VGLT    + +   +K++ L +N +    ++    CP L  L L  N I++++
Sbjct: 45  EFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104

Query: 201 E-SFFQSLPSLRVLNLSVN------HYLTELPVGISSLVSLHHLD 238
                + L +L+ L+L          Y   +      L  L +LD
Sbjct: 105 TIEPLKKLENLKSLDLFNCEVTNLNDYRENV---FKLLPQLTYLD 146

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 165 KRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
           K   + ++ ++        +   ++ L L  N + +I+ +       L +LNLS N  L 
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LY 71

Query: 223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNH 265
           E    + SL +L  LDL++  V+ L        +  LH  +N+
Sbjct: 72  ETL-DLESLSTLRTLDLNNNYVQELLVGPS---IETLHAANNN 110

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
           + +    N I  +         + + L  N I  + +        ++ L+L +N  +  +
Sbjct: 102 ETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTV 159

Query: 225 PVG--ISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNH 265
                 +S  +L HL+L    +  +  ++    L+ L   SN 
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK 202

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 184 PRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSST 242
            R +   +  + +++   S  QS  +++ L+LS N  L+++    ++    L  L+LSS 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN 68

Query: 243 KVRGLPQELKALV-LRMLHCGSNH 265
            +     +L++L  LR L   +N+
Sbjct: 69  VLYETL-DLESLSTLRTLDLNNNY 91

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 10/94 (10%), Positives = 27/94 (28%), Gaps = 4/94 (4%)

Query: 167 ISLMENEIQSLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP 225
           +S   +E + L  +     R + +         + +       +   L         ++ 
Sbjct: 318 LSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS 377

Query: 226 VGISSLVSLHHL---DLSSTKVRGLPQELKALVL 256
            G  +   L       +   +++   +E   L L
Sbjct: 378 NGRRAHAELDGTLQQAVGQIELQHATEEQSPLQL 411

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 164 VKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH--YL 221
           ++ +SL+   + S+  +P  P+L+ L L  N I    +   + LP+L  LNLS N    +
Sbjct: 51  LEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

Query: 222 TELPVGISSLVSLHHLDLS 240
           + L   +  L  L  LDL 
Sbjct: 111 STLEP-LKKLECLKSLDLF 128

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 12/105 (11%)

Query: 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQI--PTCPRLQTLLLEYNHIEEIT 200
           +FL    VGL     + +   +K++ L EN I     +     P L  L L  N +++I+
Sbjct: 52  EFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS 111

Query: 201 E-SFFQSLPSLRVLNLSVN------HYLTELPVGISSLVSLHHLD 238
                + L  L+ L+L          Y   +      L  L +LD
Sbjct: 112 TLEPLKKLECLKSLDLFNCEVTNLNDYRESV---FKLLPQLTYLD 153

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 163 GVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
           G   +++ E+ + +LP  +P    + TL++  N++  +        P LR L +S N  L
Sbjct: 41  GNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPAL----PPELRTLEVSGNQ-L 93

Query: 222 TELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLR 257
           T LPV    L+ L       T +  LP  L  L + 
Sbjct: 94  TSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIF 129

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.4 bits (141), Expect = 1e-09
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 40/196 (20%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           LT  P      G++ +S+ +N++ SLP +P    L  L    N +  +          L+
Sbjct: 133 LTSLP--VLPPGLQELSVSDNQLASLPALP--SELCKLWAYNNQLTSLPML----PSGLQ 184

Query: 212 VLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEE 271
            L++S N  L  LP   S L  L   +   T +  LP  LK L++               
Sbjct: 185 ELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIV--------------S 229

Query: 272 GNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLK-FPKLQNITQALHIKDCN--S 328
           GN L     SL      L++L +            N L   P L +   +L +       
Sbjct: 230 GNRL----TSLPVLPSELKELMV----------SGNRLTSLPMLPSGLLSLSVYRNQLTR 275

Query: 329 LPLNLLHLANMEHLQL 344
           LP +L+HL++   + L
Sbjct: 276 LPESLIHLSSETTVNL 291

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 24/157 (15%), Positives = 45/157 (28%), Gaps = 16/157 (10%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
           K + +  N + SLP       L+ L++  N +  +          L  L++  N  LT L
Sbjct: 224 KELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQ-LTRL 276

Query: 225 PVGISSLVSLHHLDLSSTKVRGLPQEL-KALVLRMLHCGSNHWPIAEEGNVLSDDAESLM 283
           P  +  L S   ++L    +     +  + +     + G                  S  
Sbjct: 277 PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPI--------IRFDMAGASAP 328

Query: 284 KEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQA 320
           +E   L       L            ++        A
Sbjct: 329 RETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 13/115 (11%)

Query: 151 GLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSL 210
           GLT  P       +  + + +N + SLP +P  P L+TL +  N +  +       L  L
Sbjct: 51  GLTTLPD-CLPAHITTLVIPDNNLTSLPALP--PELRTLEVSGNQLTSLPVLPPG-LLEL 106

Query: 211 RVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNH 265
            + +  + H L  LP   S L     L +   ++  LP       L+ L    N 
Sbjct: 107 SIFSNPLTH-LPALP---SGLCK---LWIFGNQLTSLPVLPPG--LQELSVSDNQ 152

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH--YLT 222
             I   +NEI+ L   P   RL+TLL+  N I  I E   Q+LP L  L L+ N    L 
Sbjct: 45  DAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 104

Query: 223 ELPVGISSLVSLHHLDLS 240
           +L   ++SL SL +L + 
Sbjct: 105 DLDP-LASLKSLTYLCIL 121

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 20/136 (14%)

Query: 169 LMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI 228
           L    I+   Q     R + L L    I  I E+   +L     ++ S N  + +L  G 
Sbjct: 4   LTAELIEQAAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNE-IRKLD-GF 60

Query: 229 SSLVSLHHLDLSSTKVRGLPQELKALV--LRMLHCGSNHWPIAEEGNVLSDDAESLMKEI 286
             L  L  L +++ ++  + + L   +  L  L   +N   + E            + ++
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS--LVE------------LGDL 106

Query: 287 HCLEQL-NLIALSLRG 301
             L  L +L  L +  
Sbjct: 107 DPLASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 15/95 (15%)

Query: 156 PKIEEWEGVKRIS---LMENEIQSLPQI--PTCPRLQTLLLEYNHIEEITE-SFFQSLPS 209
            K++ +  ++R+    +  N I  + +      P L  L+L  N + E+ +     SL S
Sbjct: 55  RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114

Query: 210 LRVLNLSVN------HYLTELPVGISSLVSLHHLD 238
           L  L +  N      HY   +   I  +  +  LD
Sbjct: 115 LTYLCILRNPVTNKKHYRLYV---IYKVPQVRVLD 146

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.7 bits (147), Expect = 3e-10
 Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 27/201 (13%)

Query: 175 QSLPQIPTC--PRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI-SSL 231
           ++L  +P    PR + L L  N I E+       L  LRVL LS N  +  L   +    
Sbjct: 41  RNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFN 99

Query: 232 VSLHHLDLSSTKVRGLP-QELKALVLRMLHCGSNHW---PIAEE-------------GNV 274
             L +LD+S  +++ +    + +  LR L    N +   P+ +E                
Sbjct: 100 QDLEYLDVSHNRLQNISCCPMAS--LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157

Query: 275 L-SDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNL 333
               D   +         L+L++  +    G    L+ P    +    H     S+ +N+
Sbjct: 158 FRQLDLLPVAHLHLSCILLDLVSYHI--KGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215

Query: 334 LHLANMEHLQLFSIWDSNLED 354
             +  + HLQL +I  ++   
Sbjct: 216 S-VNALGHLQLSNIKLNDENC 235

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.3 bits (128), Expect = 6e-08
 Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 17/113 (15%)

Query: 165 KRISLMENEIQSLPQIPT------CPRLQTLLLEYNHIEEITESFFQSLP-SLRVLNLSV 217
             +  ++  + SL              +  L L  N +   T S F+ LP  ++VL+L  
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML---TGSVFRCLPPKVKVLDLHN 459

Query: 218 NHYLTELPVGISSLVSLHHLDLSSTKVRGLPQE----LKALVLRMLHCGSNHW 266
           N  +  +P  ++ L +L  L+++S +++ +P      L +  L+ +    N W
Sbjct: 460 NR-IMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTS--LQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 21/165 (12%)

Query: 186 LQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVR 245
           +   +L  +    I      S  S   LN + N +   +  G S+L  L  L L    ++
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 246 GLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG--- 301
              +       +  L             N L+  A        C    +++ L+L     
Sbjct: 391 NFFKVALMTKNMSSLETLDVSL------NSLNSHAYDRT----CAWAESILVLNLSSNML 440

Query: 302 SRGVENFLKFPKLQNITQALHIKDCN--SLPLNLLHLANMEHLQL 344
           +  V     F  L    + L + +    S+P ++ HL  ++ L +
Sbjct: 441 TGSV-----FRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNV 480

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 11/87 (12%), Positives = 23/87 (26%), Gaps = 3/87 (3%)

Query: 164 VKRISLMENEIQSLPQIPT--CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
           +    L  ++   +  +          L    N   +       +L  L+ L L  N  L
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-L 389

Query: 222 TELPVGISSLVSLHHLDLSSTKVRGLP 248
                      ++  L+     +  L 
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 164 VKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220
           VK + L  N I S+P+ +     LQ L +  N ++ + +  F  L SL+ + L  N +
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 12/110 (10%)

Query: 165 KRISLMENEIQSLP-----QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH 219
           +RI L  N+I  L       +     L +L+L  N I E+ +S F+ L SL++L L+ N 
Sbjct: 59  RRIDLSNNQISELAPDAFQGL---RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115

Query: 220 YLTELPVGI-SSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHW 266
            +  L V     L +L+ L L   K++ + +     L  ++ +H   N +
Sbjct: 116 -INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 175 QSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI-SSLV 232
             +P  +P    +  + LE N I+ I    F     LR ++LS N  ++EL       L 
Sbjct: 24  TEIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLR 80

Query: 233 SLHHLDLSSTKVRGLPQEL--KALVLRMLHCGSNH 265
           SL+ L L   K+  LP+ L      L++L   +N 
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.4 bits (143), Expect = 4e-10
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 174 IQSLPQIPTCPRLQTLLLEYN-HIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI-SSL 231
           + SL  +P    L  L +E   H++ +     + L  LR L +  +  L  +        
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFT 79

Query: 232 VSLHHLDLSSTKVRGLPQE-LKALVLRMLHCGSNHW 266
             L  L+LS   +  L  + ++ L L+ L    N  
Sbjct: 80  PRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.1 bits (137), Expect = 3e-09
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 172 NEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIS 229
             +Q L    +     L+ L +  + +  +    F   P L  LNLS N  L  L     
Sbjct: 42  QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTV 100

Query: 230 SLVSLHHLDLSS 241
             +SL  L LS 
Sbjct: 101 QGLSLQELVLSG 112

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 6e-10
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 23/161 (14%)

Query: 162 EGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
             +  I+L    +  L  I     ++ L +   H      +    L +L  L +      
Sbjct: 44  NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVT 101

Query: 222 TELPVGISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWPIAEEGNVLSDDA 279
           ++    +S L SL  LD+S +        ++  L  +  +    N          ++D  
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN--------GAITD-- 151

Query: 280 ESLMKEIHCLEQL-NLIALSLRGSR--GVENFLKFPKLQNI 317
                 I  L+ L  L +L+++            FPKL  +
Sbjct: 152 ------IMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQL 186

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 1/116 (0%)

Query: 151 GLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSL 210
            +TD   IE    +K +++      +   I     L+ L +    +          L SL
Sbjct: 55  NVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114

Query: 211 RVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNH 265
            +L++S + +   +   I++L  ++ +DLS          LK L  L+ L+   + 
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.0 bits (138), Expect = 9e-10
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 164 VKRISLMENEIQSLPQIPT---CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220
              + L  NE   L         P+L+ +    N I +I E  F+    +  + L+ N  
Sbjct: 34  TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR- 92

Query: 221 LTELPVGI-SSLVSLHHLDLSSTKVRGLP 248
           L  +   +   L SL  L L S ++  + 
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCVG 121

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 14/111 (12%)

Query: 165 KRISLMENEIQSLPQIPTC----PRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220
           ++I+   N+I  +            +  +LL  N +E +    F+ L SL+ L L  N  
Sbjct: 60  RKINFSNNKITDIE--EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR- 116

Query: 221 LTELPVGI-SSLVSLHHLDLSSTKVRGLPQE----LKALVLRMLHCGSNHW 266
           +T +       L S+  L L   ++  +       L +  L  L+  +N +
Sbjct: 117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS--LSTLNLLANPF 165

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 165 KRISLMENEIQSLP-QIPTCP-RLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
           + + + +N++Q+LP  +      L  L L+ N ++ +    F SL  L  L+L  N  L 
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQ 146

Query: 223 ELPVGI-SSLVSLHHLDLSSTKVRGLP 248
            LP G+   L SL  L L + +++ +P
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVP 173

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 162 EGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220
                +     ++ ++P  IP     + L L+ N +  +    F  L  LR+L L+ N  
Sbjct: 16  NNKNSVDCSSKKLTAIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK- 72

Query: 221 LTELPVGI-SSLVSLHHLDLSSTKVRGLPQEL-KALV-LRMLHCGSN 264
           L  LP GI   L +L  L ++  K++ LP  +   LV L  L    N
Sbjct: 73  LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 165 KRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
             +SL  NE+QSLP+        L+ L L  N ++ + E  F  L  L+ L L  N  L 
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LK 194

Query: 223 ELPVGI-SSLVSLHHLDLSS 241
            +P G   SL  L  L L  
Sbjct: 195 RVPEGAFDSLEKLKMLQLQE 214

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 2e-09
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 8/118 (6%)

Query: 157 KIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLS 216
              E+  V+ + L   ++  L  +     +  L L +N +  +      +L  L VL  S
Sbjct: 436 LKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQAS 494

Query: 217 VNHYLTELPVGISSLVSLHHLDLSSTKVRGLP--QELKALV-LRMLHCGSNHWPIAEE 271
            N  L  +  G+++L  L  L L + +++     Q L +   L +L+   N   + +E
Sbjct: 495 DN-ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN--SLCQE 548

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.1 bits (137), Expect = 4e-09
 Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 8/200 (4%)

Query: 62  NDELRSCLLYCCLFPEDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEGGDHV 121
             EL SC     L PE+     T +++    + LL           L     +       
Sbjct: 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424

Query: 122 KMHDMIRDMALWIANEIEEEEKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ-I 180
                + + ++      +     L  A   LT    +E+   V  + L  N +++LP  +
Sbjct: 425 LRSKFLLENSVLKMEYADVRVLHL--AHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL 482

Query: 181 PTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP--VGISSLVSLHHLD 238
                L+ L    N +E +      +LP L+ L L  N  L +      + S   L  L+
Sbjct: 483 AALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLN 539

Query: 239 LSSTKVRGLPQELKALVLRM 258
           L    +       + L   +
Sbjct: 540 LQGNSLCQEEGIQERLAEML 559

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 167 ISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP 225
               E+++  +P  +P       L      +  I +  F     L  + +S N  L  + 
Sbjct: 14  FLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71

Query: 226 VGI-SSLVSLHHLDLS-STKVRGLPQE-LKALV-LRMLHCGSNH 265
             + S+L  LH + +  +  +  +  E  + L  L+ L   +  
Sbjct: 72  ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 167 ISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
           + L +N IQ +           +  L + N++EE+    F       +L++S    +  L
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSL 217

Query: 225 PVGI-SSLVSLHHLDLSSTKVRGLPQELKAL 254
           P     +L  L      + K     ++L AL
Sbjct: 218 PSYGLENLKKLRARSTYNLKKLPTLEKLVAL 248

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 30/202 (14%), Positives = 60/202 (29%), Gaps = 39/202 (19%)

Query: 165 KRISLMENEIQSLPQI--PTCPRLQTLLLEYN-HIEEITESFFQSLPS-LRVLNLSVNHY 220
           + + +    I+ LP +      +   L ++ N +I  I  + F  L     +L L+ N  
Sbjct: 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG- 165

Query: 221 LTELPVGISSLVSLHHLDLSST-KVRGLPQEL--KALVLRMLHCGSNHWPIAEEGNVLSD 277
           + E+     +   L  L+LS    +  LP ++   A    +L               +  
Sbjct: 166 IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR---------IHS 216

Query: 278 DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLA 337
                ++ +  L   +   L       +    K   L                     L 
Sbjct: 217 LPSYGLENLKKLRARSTYNLKK-----LPTLEKLVALME-----------------ASLT 254

Query: 338 NMEHLQLFSIWDSNLEDWNVDC 359
              H   F+ W   + + +  C
Sbjct: 255 YPSHCCAFANWRRQISELHPIC 276

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.5 bits (136), Expect = 6e-09
 Identities = 37/219 (16%), Positives = 69/219 (31%), Gaps = 56/219 (25%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESF-------- 203
                K         + L    + SLP     P++  L +  N +  + E          
Sbjct: 49  AVSLLKECLINQFSELQLNRLNLSSLPDN-LPPQITVLEITQNALISLPELPASLEYLDA 107

Query: 204 ----FQSLP----SLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV 255
                 +LP    SL+ L++  N  LT LP   +    L +++  + ++  LP+   +  
Sbjct: 108 CDNRLSTLPELPASLKHLDVDNNQ-LTMLPELPA---LLEYINADNNQLTMLPELPTS-- 161

Query: 256 LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLK----- 310
           L +L   +N                 L +    LE L++            N L+     
Sbjct: 162 LEVLSVRNNQL-------------TFLPELPESLEALDVS----------TNLLESLPAV 198

Query: 311 FPKLQNITQALHIKDCN-----SLPLNLLHLANMEHLQL 344
             +  +  +      C       +P N+L L     + L
Sbjct: 199 PVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 9/108 (8%)

Query: 158 IEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSV 217
            ++WE         NE  SL +     +   L L   ++  + ++     P + VL ++ 
Sbjct: 33  WDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLP---PQITVLEITQ 89

Query: 218 NHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNH 265
           N  L  LP       SL +LD    ++  LP+   +  L+ L   +N 
Sbjct: 90  NA-LISLP---ELPASLEYLDACDNRLSTLPELPAS--LKHLDVDNNQ 131

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.4 bits (128), Expect = 5e-08
 Identities = 22/140 (15%), Positives = 52/140 (37%), Gaps = 10/140 (7%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQ---SLPSLRVLNLSVNHYL 221
           + +S+  N++  LP++P    L+ L +  N +E +     +   S  +        N  +
Sbjct: 163 EVLSVRNNQLTFLPELPE--SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR-I 219

Query: 222 TELPVGISSLVSLHHLDLS----STKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSD 277
           T +P  I SL     + L     S+++R    +  A                ++  +   
Sbjct: 220 THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP 279

Query: 278 DAESLMKEIHCLEQLNLIAL 297
            A+++       +Q ++  +
Sbjct: 280 LADAVTAWFPENKQSDVSQI 299

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)

Query: 151 GLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSL 210
            +TDA    E   + +I    ++I+S+  I   P ++ L L  N + +I  S  + L +L
Sbjct: 30  SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNL 87

Query: 211 RVLNLSVNHYLTELPVGI-SSLVSLHHLDLSSTKVRGLP 248
             L L+ N  L  LP G+   L +L  L L   +++ LP
Sbjct: 88  TYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLP 125

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 15/105 (14%)

Query: 165 KRISLMENEIQSLP----QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY 220
             + L  N++QSLP       T   L+ L+L  N ++ + +  F  L +L  LNL+ N  
Sbjct: 88  TYLILTGNQLQSLPNGVFDKLT--NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ- 144

Query: 221 LTELPVGI-SSLVSLHHLDLSSTKVRGLPQ-------ELKALVLR 257
           L  LP G+   L +L  LDLS  +++ LP+       +LK L L 
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 168 SLMENEIQSLP----QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE 223
           +L  N++Q+L        T   L TL L  N +  +    F  L  L  L L  N  L  
Sbjct: 65  NLDYNQLQTLSAGVFDDLT--ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKS 121

Query: 224 LPVGI-SSLVSLHHLDLSSTKVRGLP 248
           LP G+   L  L  L L++ +++ +P
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIP 147

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 10/109 (9%)

Query: 165 KRISLMENEIQSLPQ-IPTCP-RLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
             + L  N++ SLP  +     +L  L L  N ++ +    F  L  L+ L L+ N  L 
Sbjct: 86  GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQ 144

Query: 223 ELPVGI-SSLVSLHHLDLSSTKVRGLPQE----LKALVLRMLHCGSNHW 266
            +P G    L +L  L LS+ +++ +P      L  L    L    N +
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF--GNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 180 IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI-SSLVSLHHLD 238
           IP     + L L+   +  ++++ F+ L  L  LNL  N  L  L  G+   L  L  L 
Sbjct: 33  IPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLG 89

Query: 239 LSSTKVRGLP 248
           L++ ++  LP
Sbjct: 90  LANNQLASLP 99

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.6 bits (126), Expect = 6e-08
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 9/120 (7%)

Query: 151 GLTDAPKIEEWEGVKRISLMENEIQSLPQIP-----TCPRLQTLLLEYNHIEEI-TESFF 204
           GL  A    ++  ++ ++L    +++   +         +LQ L L +N + +       
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 205 QSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSN 264
                L  LNLS    L ++P G+ +   L  LDLS  ++   P   +   +  L    N
Sbjct: 250 DWPSQLNSLNLSFTG-LKQVPKGLPA--KLSVLDLSYNRLDRNPSPDELPQVGNLSLKGN 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 10/108 (9%)

Query: 161 WEGVKRISLMENEIQSLPQIPT------CPRLQTLLLEYNHIEEITESFFQSLPSLRVLN 214
              +  ++L      +             P L+ L +   H    +    +  P+L  L+
Sbjct: 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179

Query: 215 LSVNHYLTELPVGIS----SLVSLHHLDLSSTKVRGLPQELKALVLRM 258
           LS N  L E  +  +       +L  L L +  +        AL    
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.4 bits (110), Expect = 6e-06
 Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 11/108 (10%)

Query: 162 EGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHI----EEITESFFQSLPSLRVLNL 215
            G+K +S+ +    +    Q+   P L TL L  N        I+       P+L+VL L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 216 SVNHYLTELPVGISSL----VSLHHLDLSSTKVRGLPQELKALVLRML 259
                +       S+L    V L  LDLS   +R             L
Sbjct: 209 RNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 10/137 (7%)

Query: 163 GVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
             K ++L  N I+ +  +     L+ L L  N I++I E+      +L  L +S N  + 
Sbjct: 49  ACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYN-QIA 106

Query: 223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV----LRMLHCGSNHWPIAEEGNVLSDD 278
            L  GI  LV+L  L +S+ K+     E+  L     L  L    N  P+  +    +  
Sbjct: 107 SLS-GIEKLVNLRVLYMSNNKITNW-GEIDKLAALDKLEDLLLAGN--PLYNDYKENNAT 162

Query: 279 AESLMKEIHCLEQLNLI 295
           +E  ++ +  L  L  +
Sbjct: 163 SEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 157 KIEEWEGV----KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITE-SFFQSLPSLR 211
           KIE  + V    + + +  N+I SL  I     L+ L +  N I    E     +L  L 
Sbjct: 84  KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143

Query: 212 VLNLSVN 218
            L L+ N
Sbjct: 144 DLLLAGN 150

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 165 KRISLMENEIQSLPQIPT---CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
             + L +NE+  +         P L  L L+ N +  I  + F+    ++ L L  N  +
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-I 90

Query: 222 TELPVGI-SSLVSLHHLDLSSTKVRGLPQ----ELKALVLRMLHCGSNHW 266
            E+   +   L  L  L+L   ++  +       L +  L  L+  SN +
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS--LTSLNLASNPF 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 164 VKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
           V  + L  N+   +P+ +     L  + L  N I  ++   F ++  L  L LS N  L 
Sbjct: 33  VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LR 91

Query: 223 ELPVGI-SSLVSLHHLDLSSTKVRGLPQ----ELKALVLRMLHCGSNHW 266
            +P      L SL  L L    +  +P+    +L A  L  L  G+N  
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA--LSHLAIGANPL 138

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 36/200 (18%), Positives = 59/200 (29%), Gaps = 46/200 (23%)

Query: 176 SLPQIPTCPRLQTLLLEYNHIE-EI-TESFFQSLPSLRVLNLSVNHYLTELPV-GISSLV 232
           S+        L +L L  N +   + T +   S   L+ LN+S N       V G   L 
Sbjct: 92  SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151

Query: 233 SLHHLDLSSTKVRG-LPQELKALV----LRMLHCGSNHW----PIAEEGNVLSDDAESLM 283
           SL  LDLS+  + G              L+ L    N       +      ++       
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVN------- 201

Query: 284 KEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNIT--QALHIKDCN---SLPLNLLHLAN 338
                LE L++ + +             P L + +  Q L I            +     
Sbjct: 202 -----LEFLDVSSNNFSTG--------IPFLGDCSALQHLDISGNKLSGDFSRAISTCTE 248

Query: 339 MEHLQLF------SIWDSNL 352
           ++ L +        I    L
Sbjct: 249 LKLLNISSNQFVGPIPPLPL 268

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 165 KRISLMENEIQ-SLP-QIPTCPRLQTLLLEYNHIE-EITESFFQSLPSLRVLNLSVNHYL 221
             + L  N    ++P    +C  L++L L  N+   E+       +  L+VL+LS N + 
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 222 TELPVGISSL-VSLHHLDLSSTKVRG-LPQELKALVLRMLH 260
            ELP  +++L  SL  LDLSS    G +   L       L 
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 179 QIPTC----PRLQTLLLEYNHIE-EITESFFQSLPSLRVLNLSVNHYLT-ELPVGISSLV 232
            IP+      +L+ L L  N +E EI +     + +L  L L  N  LT E+P G+S+  
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFND-LTGEIPSGLSNCT 490

Query: 233 SLHHLDLSSTKVRG-LPQELKALV-LRMLHCGSNH 265
           +L+ + LS+ ++ G +P+ +  L  L +L   +N 
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 183 CPRLQTLLLEYNHIE-EITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSS 241
           C  L  + L  N +  EI +     L +L +L LS N +   +P  +    SL  LDL++
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547

Query: 242 TKVRG-LPQELKALVLRM 258
               G +P  +     ++
Sbjct: 548 NLFNGTIPAAMFKQSGKI 565

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 8/105 (7%)

Query: 167 ISLMENEIQ-SLPQ-IPTCPRLQTLLLEYNHIE-EITESFFQSLPSLRVLNLSVNHYLT- 222
           + L  N ++  +PQ +     L+TL+L++N +  EI      +  +L  ++LS N  LT 
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNR-LTG 504

Query: 223 ELPVGISSLVSLHHLDLSSTKVRG-LPQELKALV-LRMLHCGSNH 265
           E+P  I  L +L  L LS+    G +P EL     L  L   +N 
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 179 QIPT----CPRLQTLLLEYNHIE-EITESFFQSLPSLRVLNLSVNHYLT-ELPVGISSLV 232
           +IP     C  L +L L +N++   I  S    L  LR L L +N  L  E+P  +  + 
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNM-LEGEIPQELMYVK 466

Query: 233 SLHHLDLSSTKVRG-LPQELKALV-LRMLHCGSNH 265
           +L  L L    + G +P  L     L  +   +N 
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 165 KRISLMENEIQ-SLPQ-IPTCPRLQTLLLEYNHIE-EITESFFQSLPSLRVLNLSVNHYL 221
           + + +  N++     + I TC  L+ L +  N     I       L SL+ L+L+ N   
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENK-F 281

Query: 222 T-ELPVGIS-SLVSLHHLDLSSTKVRG-LPQELKALV-LRMLHCGSNH 265
           T E+P  +S +  +L  LDLS     G +P    +   L  L   SN+
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 173 EIQSLPQIPTCPRLQTLLLEYNHIE-EITESFFQSLPSLRVLNLSVNHYLTELPVGI--- 228
            + +L  + +C  L+ L +  N ++     S    L SL VL+LS N       VG    
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174

Query: 229 SSLVSLHHLDLSSTKVRG 246
                L HL +S  K+ G
Sbjct: 175 DGCGELKHLAISGNKISG 192

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 183 CPRLQTLLLEYNHIE-EITESFFQS-LPSLRVLNLSVNHYLT-ELPVGISSLVSLHHLDL 239
              L TL L  N+    I  +  Q+   +L+ L L  N   T ++P  +S+   L  L L
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG-FTGKIPPTLSNCSELVSLHL 425

Query: 240 SSTKVRG-LPQELKALV-LRMLHCGSNH 265
           S   + G +P  L +L  LR L    N 
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNM 453

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 178 PQIPTCPRLQTLLLEYNHIE---EITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSL 234
             I      +      N +E     +E     L +    N++   Y         +  S+
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSM 634

Query: 235 HHLDLSSTKVRG-LPQELKALV-LRMLHCGSNH 265
             LD+S   + G +P+E+ ++  L +L+ G N 
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 178 PQIPTCPRLQTLLLEYNHIE-EITESFFQSLPSLRVLNLSVNHYLT-ELPVGISSLVSLH 235
           P       +  L + YN +   I +     +P L +LNL  N  ++  +P  +  L  L+
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHND-ISGSIPDEVGDLRGLN 683

Query: 236 HLDLSSTKVRG-LPQELKAL 254
            LDLSS K+ G +PQ + AL
Sbjct: 684 ILDLSSNKLDGRIPQAMSAL 703

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 20/152 (13%)

Query: 202 SFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGL---PQELKALV-LR 257
           S   SL  L  L LS +H    +  G     SL  LDLS   + G       L +   L+
Sbjct: 71  SSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129

Query: 258 MLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGS--RGVENFLKFPKLQ 315
            L+  SN      +          L      LE L+L A S+ G+   G        +L+
Sbjct: 130 FLNVSSNTL----DFPGKVSGGLKLNS----LEVLDLSANSISGANVVGWVLSDGCGELK 181

Query: 316 NITQALHIKDCN-SLPLNLLHLANMEHLQLFS 346
           +    L I     S  +++    N+E L + S
Sbjct: 182 H----LAISGNKISGDVDVSRCVNLEFLDVSS 209

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 179 QIPT----CPRLQTLLLEYNHIE-EITESFFQSLPSLRVLNLSVNHYLT-ELPVGISSLV 232
            IP      P L  L L +N I   I +     L  L +L+LS N  L   +P  +S+L 
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDLRGLNILDLSSNK-LDGRIPQAMSALT 704

Query: 233 SLHHLDLS 240
            L  +DLS
Sbjct: 705 MLTEIDLS 712

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 180 IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI-SSLVSLHHLD 238
           IP+      L LE N ++ +    F  L  L  L+LS N  +  LP G+   L  L  L 
Sbjct: 26  IPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILY 82

Query: 239 LSSTKVRGLPQ-------ELKALVLR 257
           L   K++ LP        +LK L L 
Sbjct: 83  LHENKLQSLPNGVFDKLTQLKELALD 108

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 11/98 (11%)

Query: 175 QSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI-SSLV 232
            S+P  IPT    Q L L  N I ++    F  L  L  L+L  N  LT LP G+   L 
Sbjct: 22  ASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLT 78

Query: 233 SLHHLDLSSTKVRGLPQ----ELKALVLRMLHCGSNHW 266
            L  L L+  +++ +P+     LK+L    L   +N W
Sbjct: 79  QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL--NNPW 114

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 11/98 (11%)

Query: 175 QSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI-SSLV 232
            S+P  IPT    Q L L  N I ++    F  L +L+ L  + N  LT +P G+   L 
Sbjct: 25  ASVPAGIPT--DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLT 81

Query: 233 SLHHLDLSSTKVRGLPQ----ELKALVLRMLHCGSNHW 266
            L  LDL+   ++ +P+     LK+L    L+  +N W
Sbjct: 82  QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY--NNPW 117

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 15/108 (13%)

Query: 168 SLMENEIQSLP-----QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT 222
            L  N++ +LP      +     L  L L  N +  +  + F  L  L+ L +  N  LT
Sbjct: 70  YLGSNQLGALPVGVFDSLTQ---LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LT 125

Query: 223 ELPVGISSLVSLHHLDLSSTKVRGLPQE----LKALVLRMLHCGSNHW 266
           ELP GI  L  L HL L   +++ +P      L +L    L    N W
Sbjct: 126 ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF--GNPW 171

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 180 IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI-SSLVSLHHLD 238
           IPT    Q L L  N I ++    F SL +L+ L L  N  L  LPVG+  SL  L  LD
Sbjct: 38  IPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLD 94

Query: 239 LSSTKVRGLP 248
           L + ++  LP
Sbjct: 95  LGTNQLTVLP 104

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 179 QIPT----CPRLQTLLLEYNHIE-EITESFFQSLPSLRVLNLSVNHYLT-ELPVGISSLV 232
                       Q + L  N +  ++ +       +L  L+L  N  +   LP G++ L 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNR-IYGTLPQGLTQLK 268

Query: 233 SLHHLDLS 240
            LH L++S
Sbjct: 269 FLHSLNVS 276

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 183 CPRLQTLLLEYNHIE---EITESFFQSLPSLRVLNLSVNHYLT-ELPVGISSLVSLHHLD 238
             R+  L L   ++     I  S   +LP L  L +   + L   +P  I+ L  LH+L 
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 239 LSSTKVRG-LPQELKALV-LRMLHCGSNH 265
           ++ T V G +P  L  +  L  L    N 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 178 PQIPTCPRLQTLLLEYNHIE-EITESFFQSLPSLRVLNLSVNHYLT-ELPVGISSLVSLH 235
           P I    +L  L + + ++   I +   Q + +L  L+ S N  L+  LP  ISSL +L 
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNA-LSGTLPPSISSLPNLV 152

Query: 236 HLDLSSTKVRG-LPQELKALV--LRMLHCGSNH 265
            +     ++ G +P    +       +    N 
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 7/103 (6%)

Query: 186 LQTLLLEYNHIE-EITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKV 244
           L  + L  N +E + +  F  S  + + ++L+ N    +L   +    +L+ LDL + ++
Sbjct: 199 LAFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRI 256

Query: 245 RG-LPQELKALV-LRMLHCGSNH--WPIAEEGNVLSDDAESLM 283
            G LPQ L  L  L  L+   N+    I + GN+   D  +  
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 36/181 (19%), Positives = 64/181 (35%), Gaps = 30/181 (16%)

Query: 183 CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG--ISSLVSLHHLDLS 240
           C +LQ L LE   + +   +      +L  LNLS     +E  +   +SS   L  L+LS
Sbjct: 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176

Query: 241 STK----------VRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDA-ESLMKEIHCL 289
                        V  + + +    L +     N          L      +L++    L
Sbjct: 177 WCFDFTEKHVQVAVAHVSETIT--QLNLSGYRKN----------LQKSDLSTLVRRCPNL 224

Query: 290 EQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSL-PLNLLHLANMEHLQLFSIW 348
             L+L    +  +   + F +   LQ+    L +  C  + P  LL L  +  L+   ++
Sbjct: 225 VHLDLSDSVMLKNDCFQEFFQLNYLQH----LSLSRCYDIIPETLLELGEIPTLKTLQVF 280

Query: 349 D 349
            
Sbjct: 281 G 281

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 14/110 (12%)

Query: 166 RISLMENEIQSLP----QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL 221
           ++ L  N++QSLP       T   L  L L  N ++ +    F  L  L+ L L+ N  L
Sbjct: 56  QLYLGGNKLQSLPNGVFNKLT--SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-L 112

Query: 222 TELPVGI-SSLVSLHHLDLSSTKVRGLPQE----LKALVLRMLHCGSNHW 266
             LP G+   L  L  L L   +++ +P      L +L    LH   N W
Sbjct: 113 QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH--DNPW 160

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 178 PQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI-SSLVSLHH 236
             IP   +   L LE N ++ +    F  L SL  L L  N  L  LP G+ + L SL +
Sbjct: 24  TGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTY 80

Query: 237 LDLSSTKVRGLP 248
           L+LS+ +++ LP
Sbjct: 81  LNLSTNQLQSLP 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	363
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.8
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.8
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.79
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.79
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.77
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.76
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.76
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.75
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.75
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.75
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.75
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.74
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.74
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.74
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.74
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.74
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.74
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.73
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.72
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.72
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.72
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.72
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.71
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.71
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.71
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.71
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.7
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.7
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.7
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.7
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.7
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.7
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.7
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.69
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.69
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.69
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.69
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.68
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.68
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.68
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.68
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.68
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.67
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.67
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.67
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.67
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.67
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.67
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.66
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.66
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.66
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.65
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.65
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.64
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.63
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.63
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.62
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.62
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.62
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.61
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.61
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.6
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.59
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.59
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.58
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.58
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.57
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.57
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.57
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.57
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.56
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.56
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.55
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.55
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.54
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.45
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.45
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.44
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.43
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.43
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.42
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.4
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.4
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.39
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.39
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.37
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.35
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.35
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.34
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.26
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.25
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.24
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.95
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.87
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.71
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.67
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.62
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.48
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.31
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.22
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.0
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.98
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.76
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.73
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.73
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.72
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.7
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.52
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.0
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.35
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.15
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.97
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	91.69
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	91.35
2fna_A	357	Conserved hypothetical protein; structural genomic	90.75
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	90.51
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	89.8
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	87.5
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	85.8
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	85.29

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=4.9e-23  Score=187.27  Aligned_cols=204  Identities=24%  Similarity=0.283  Sum_probs=179.2

Q ss_pred             ceeEEecCCCCCCCcc-ccccccceEEEeecccccccCC-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCC
Q 017975          142 EKFLVRAGVGLTDAPK-IEEWEGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH  219 (363)
Q Consensus       142 ~~~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~  219 (363)
                      -..+...+..+..+|. +..++++++|++++|.++.+|. +..+++|++|++++|.++.+|.. ++++++|++|++++|.
T Consensus        83 l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~  161 (328)
T 4fcg_A           83 RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACP  161 (328)
T ss_dssp             CCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEEET
T ss_pred             eeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCCCC
Confidence            3456666777776664 6778999999999999998885 78999999999999999988776 8999999999999988


Q ss_pred             CccccCccccC---------CCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccc
Q 017975          220 YLTELPVGISS---------LVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCL  289 (363)
Q Consensus       220 ~~~~lp~~i~~---------L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L  289 (363)
                      ..+.+|..++.         +++|++|++++|.++.+|..++.+. |+.|++++|.+..+|          ..+..+++|
T Consensus       162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~----------~~l~~l~~L  231 (328)
T 4fcg_A          162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG----------PAIHHLPKL  231 (328)
T ss_dssp             TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCC----------GGGGGCTTC
T ss_pred             CccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCc----------hhhccCCCC
Confidence            88999988765         9999999999999999999999999 999999999998877          578899999


Q ss_pred             cccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccccC
Q 017975          290 EQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAG  361 (363)
Q Consensus       290 ~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~  361 (363)
                      +.|++.+|.+.+..+ ..+..++++    ++|++++|+.....+..+.++++|+.|++++|+.++.+|+..+
T Consensus       232 ~~L~Ls~n~~~~~~p-~~~~~l~~L----~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~  298 (328)
T 4fcg_A          232 EELDLRGCTALRNYP-PIFGGRAPL----KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA  298 (328)
T ss_dssp             CEEECTTCTTCCBCC-CCTTCCCCC----CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred             CEEECcCCcchhhhH-HHhcCCCCC----CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence            999999988877665 567777777    9999999988777777899999999999999999999998653

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.83  E-value=4.7e-22  Score=192.97  Aligned_cols=126  Identities=17%  Similarity=0.174  Sum_probs=98.3

Q ss_pred             CccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccccccccchHHHHHHHHhhcCCCCChhhhHHHh----------
Q 017975            1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLL----------   70 (363)
Q Consensus         1 Iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~lk~cfl----------   70 (363)
                      ||++|+|+||||+++|+.|+.+ +   |+.+ +.+.+..+...  .++|..++++||++||+ ++|.||+          
T Consensus       322 I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~  393 (549)
T 2a5y_B          322 TIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSAL  393 (549)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHHHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHT
T ss_pred             HHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhhccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHh
Confidence            5789999999999999999874 3   5443 34444332211  12688999999999999 9999999          


Q ss_pred             -HhcCCCCCcccChHHHHHHHHHh--CCccCcC-------HHHHHHHHHHhhcccC----CCCceeechhHHHHHHHHhh
Q 017975           71 -YCCLFPEDSEIRKTDLIVYWESE--GLLDSIG-------GWDVLGALVRACLLEE----GGDHVKMHDMIRDMALWIAN  136 (363)
Q Consensus        71 -~~s~Fp~~~~~~~~~li~~w~a~--g~~~~~~-------~~~~~~~L~~rsli~~----~~~~~~mhdl~~~~~~~i~~  136 (363)
                       |||+||+++.|+    +++|+|+  ||+...+       +..|+++|+++||++.    ....|+|||++|++|++++.
T Consensus       394 ~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~  469 (549)
T 2a5y_B          394 AFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVD  469 (549)
T ss_dssp             TGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSC
T ss_pred             hheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHH
Confidence             999999999998    8999999  9997542       3349999999999997    24579999999999998876


Q ss_pred             hh
Q 017975          137 EI  138 (363)
Q Consensus       137 ~~  138 (363)
                      ++
T Consensus       470 ~~  471 (549)
T 2a5y_B          470 AQ  471 (549)
T ss_dssp             TH
T ss_pred             HH
Confidence            54

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=1.3e-20  Score=171.31  Aligned_cols=181  Identities=20%  Similarity=0.265  Sum_probs=159.6

Q ss_pred             ccceEEEeecccccccCC-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEcc
Q 017975          162 EGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLS  240 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~  240 (363)
                      .+++.|++++|.++.+|. +..+++|++|++++|.+..+|.. ++++++|++|++++| .++.+|..++.+++|++|+++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARN-PLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence            689999999999999885 77899999999999999988766 899999999999999 677999999999999999999


Q ss_pred             CC-CCCccchhhhc---------cc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCccccccc
Q 017975          241 ST-KVRGLPQELKA---------LV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFL  309 (363)
Q Consensus       241 ~~-~l~~lP~~i~~---------L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~  309 (363)
                      +| .+..+|..+..         +. |+.|+++.|.++.+|          ..+..+++|+.|++.+|.+.+..  ..+.
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp----------~~l~~l~~L~~L~L~~N~l~~l~--~~l~  226 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP----------ASIANLQNLKSLKIRNSPLSALG--PAIH  226 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC----------GGGGGCTTCCEEEEESSCCCCCC--GGGG
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch----------HhhcCCCCCCEEEccCCCCCcCc--hhhc
Confidence            97 45568988765         77 999999999998877          67899999999999999988543  3577


Q ss_pred             CCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccccc
Q 017975          310 KFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCA  360 (363)
Q Consensus       310 ~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~  360 (363)
                      .++++    ++|++++|+.....+..+..+++|+.|++++|...+.+|...
T Consensus       227 ~l~~L----~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~  273 (328)
T 4fcg_A          227 HLPKL----EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI  273 (328)
T ss_dssp             GCTTC----CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG
T ss_pred             cCCCC----CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh
Confidence            77776    999999998877777789999999999999999999998754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.80  E-value=2.2e-19  Score=159.88  Aligned_cols=204  Identities=24%  Similarity=0.286  Sum_probs=131.0

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      ..+.+.+..++.+|. ...+++++|++++|.++.++.  +..+++|++|++++|.++.+.+..+.++++|++|++++|..
T Consensus        14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~   92 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (285)
T ss_dssp             CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence            345566666666664 234688888888888888763  67888888888888888888666688888888888888854


Q ss_pred             cccc-CccccCCCCCCEEEccCCCCCcc-chhhhccc-hhccccCcCccCcCCC---CCCCCC-----------Ccc-cc
Q 017975          221 LTEL-PVGISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWPIAEE---GNVLSD-----------DAE-SL  282 (363)
Q Consensus       221 ~~~l-p~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l-----------~~~-~~  282 (363)
                      ++.+ |..+..+++|++|++++|.+..+ |..+..++ |+.|+++.|.++.+|.   .++.++           ..+ ..
T Consensus        93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  172 (285)
T 1ozn_A           93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence            6666 66788888888888888888877 45677777 8888888888877764   111111           111 12


Q ss_pred             hhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCC
Q 017975          283 MKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNL  352 (363)
Q Consensus       283 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~  352 (363)
                      +..+++|+.|++.+|.+.+..+ ..+..++++    +.|++++|......+..+..+++|+.|++++|+.
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          173 FRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRL----MTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECT-TTTTTCTTC----CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             hcCccccCEEECCCCcccccCH-hHccCcccc----cEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            4445555555555554443322 333444443    5555555543322223355555555555555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.80  E-value=3.1e-19  Score=157.90  Aligned_cols=194  Identities=20%  Similarity=0.318  Sum_probs=111.2

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccc
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE  223 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~  223 (363)
                      .+...+..+..++.+..++++++|++++|.++.++.+..+++|++|++++|.++.+++..+.++++|++|++++| .++.
T Consensus        45 ~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~  123 (272)
T 3rfs_A           45 QIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQS  123 (272)
T ss_dssp             EEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCC
T ss_pred             eeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCc
Confidence            344445555555555666666666666666666655666666666666666666666555566666666666666 3444


Q ss_pred             cCcc-ccCCCCCCEEEccCCCCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEec
Q 017975          224 LPVG-ISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLR  300 (363)
Q Consensus       224 lp~~-i~~L~~L~~L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~  300 (363)
                      +|.. ++.+++|++|++++|.++.+|.. +..+. |+.|+++.|.++.+|.         ..+..+++|+.|++.+|.+.
T Consensus       124 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE---------GVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSSCCS
T ss_pred             cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH---------HHhcCCccCCEEECCCCcCC
Confidence            4332 56666666666666666665543 35555 6666666666655542         33455666666666666655


Q ss_pred             cCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975          301 GSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       301 ~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  359 (363)
                      +..+ ..+..++++    +.|++++|...       ..+++|+.|++++|...+.+|..
T Consensus       195 ~~~~-~~~~~l~~L----~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          195 SVPD-GVFDRLTSL----QYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CCCT-TTTTTCTTC----CEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred             ccCH-HHHhCCcCC----CEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCc
Confidence            4332 334445544    66666665321       22345556666666665555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.80  E-value=6.1e-19  Score=155.81  Aligned_cols=195  Identities=22%  Similarity=0.358  Sum_probs=162.1

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      ..+.+.+..++.+|... .++++.|++++|.++.++.  +..+++|++|++++|.++.+++..|.++++|++|++++| .
T Consensus        19 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~   96 (270)
T 2o6q_A           19 NSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-K   96 (270)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-C
T ss_pred             CEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-c
Confidence            45777777777777532 2689999999999999874  789999999999999999999987899999999999999 6


Q ss_pred             ccccCc-cccCCCCCCEEEccCCCCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEE
Q 017975          221 LTELPV-GISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIAL  297 (363)
Q Consensus       221 ~~~lp~-~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~  297 (363)
                      ++.+|. .+..+++|++|++++|.++.+|.. +..++ |+.|+++.|.++.+|.         ..+..+++|+.|++.+|
T Consensus        97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A           97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK---------GVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSS
T ss_pred             CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH---------hHccCCcccceeEecCC
Confidence            777664 568999999999999999998754 67888 9999999999988873         45788999999999999


Q ss_pred             EeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975          298 SLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       298 ~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l  353 (363)
                      .+.+..+ ..+..++++    ++|++++|.........+..+++|+.|++++|+..
T Consensus       168 ~l~~~~~-~~~~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          168 QLKRVPE-GAFDKLTEL----KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCSCCCT-TTTTTCTTC----CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCcEeCh-hHhccCCCc----CEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            8876543 456666776    99999998754444456888999999999999854

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.80  E-value=1.6e-19  Score=159.65  Aligned_cols=189  Identities=23%  Similarity=0.306  Sum_probs=158.2

Q ss_pred             CCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcc-ccC
Q 017975          152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISS  230 (363)
Q Consensus       152 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~  230 (363)
                      .........+++++.|++.++.++.++.+..+++|++|++++|.+..++ . +..+++|++|++++| .++.+|.. ++.
T Consensus        31 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~L~~n-~l~~~~~~~~~~  107 (272)
T 3rfs_A           31 VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-A-LKELTNLTYLILTGN-QLQSLPNGVFDK  107 (272)
T ss_dssp             TTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-G-GTTCTTCCEEECTTS-CCCCCCTTTTTT
T ss_pred             cccccccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-h-hcCCCCCCEEECCCC-ccCccChhHhcC
Confidence            3444556677899999999999999999999999999999999998875 3 899999999999999 66666644 799


Q ss_pred             CCCCCEEEccCCCCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccc
Q 017975          231 LVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENF  308 (363)
Q Consensus       231 L~~L~~L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l  308 (363)
                      +++|++|++++|.++.+|.. +..+. |+.|+++.|.++.+|.         ..+..+++|+.|++.+|.+.+..+ ..+
T Consensus       108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------~~~~~l~~L~~L~l~~n~l~~~~~-~~~  177 (272)
T 3rfs_A          108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK---------GVFDKLTNLTELDLSYNQLQSLPE-GVF  177 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSSCCCCCCT-TTT
T ss_pred             CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH---------HHhccCccCCEEECCCCCcCccCH-HHh
Confidence            99999999999999998765 68888 9999999999988873         456789999999999998875443 456


Q ss_pred             cCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccc
Q 017975          309 LKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNV  357 (363)
Q Consensus       309 ~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~  357 (363)
                      ..++++    +.|++++|......+..+..+++|+.|++++|+.....|
T Consensus       178 ~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          178 DKLTQL----KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             TTCTTC----CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cCCccC----CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            677776    999999987655545568899999999999998876655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.79  E-value=2.5e-19  Score=161.74  Aligned_cols=198  Identities=17%  Similarity=0.203  Sum_probs=142.9

Q ss_pred             ccccccccceEEEeec-ccccc-cC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCC
Q 017975          156 PKIEEWEGVKRISLME-NEIQS-LP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLV  232 (363)
Q Consensus       156 ~~~~~~~~l~~L~l~~-~~~~~-l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~  232 (363)
                      +.+..++++++|++++ |.+.. +| .+..+++|++|++++|.+....+..+.++++|++|++++|.....+|..++.++
T Consensus        70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  149 (313)
T 1ogq_A           70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence            3566777888888874 66653 44 367778888888888887744444477888888888888844446777788888


Q ss_pred             CCCEEEccCCCCC-ccchhhhccc--hhccccCcCccC-cCCC--C--CCCCC---------CcccchhhhccccccceE
Q 017975          233 SLHHLDLSSTKVR-GLPQELKALV--LRMLHCGSNHWP-IAEE--G--NVLSD---------DAESLMKEIHCLEQLNLI  295 (363)
Q Consensus       233 ~L~~L~l~~~~l~-~lP~~i~~L~--L~~L~~~~~~l~-~lp~--~--~l~~l---------~~~~~l~~l~~L~~L~l~  295 (363)
                      +|++|++++|.++ .+|..++.+.  |+.|+++.|.+. .+|.  .  .+..+         ..|..+..+++|+.|++.
T Consensus       150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  229 (313)
T 1ogq_A          150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence            8888888888877 5777777775  777777777776 3332  1  12221         355677888899999998


Q ss_pred             EEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975          296 ALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       296 ~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  359 (363)
                      +|.+.+..+  .+..++++    ++|++++|......+..+..+++|+.|++++|++.+.+|+.
T Consensus       230 ~N~l~~~~~--~~~~l~~L----~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          230 KNSLAFDLG--KVGLSKNL----NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             SSEECCBGG--GCCCCTTC----CEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             CCceeeecC--cccccCCC----CEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            888875543  25555555    99999998765455677889999999999999988888775

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.79  E-value=4.5e-19  Score=159.46  Aligned_cols=208  Identities=22%  Similarity=0.245  Sum_probs=150.3

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCcccc---chHHhcCCCCCCEEEcccC
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEI---TESFFQSLPSLRVLNLSVN  218 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~---~~~~~~~l~~L~~L~L~~~  218 (363)
                      .+.+.+..++.+|.. -.+++++|++++|.++.+|.  +..+++|++|++++|.+...   +.. +..+++|++|++++|
T Consensus        11 ~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           11 EIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFN   88 (306)
T ss_dssp             EEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSC
T ss_pred             EEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCC
Confidence            455566666766652 23689999999999988875  67889999999999988755   344 667899999999999


Q ss_pred             CCccccCccccCCCCCCEEEccCCCCCccch--hhhccc-hhccccCcCccCcCCC---CCCCCC-------------Cc
Q 017975          219 HYLTELPVGISSLVSLHHLDLSSTKVRGLPQ--ELKALV-LRMLHCGSNHWPIAEE---GNVLSD-------------DA  279 (363)
Q Consensus       219 ~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~--~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l-------------~~  279 (363)
                       .+..+|..+..+++|++|++++|.++.+|.  .+..+. |+.|+++.|.+...+.   .++.++             ..
T Consensus        89 -~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A           89 -GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             -SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             -ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence             777888888889999999999988888764  677777 8888888888765543   222222             14


Q ss_pred             ccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975          280 ESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       280 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  359 (363)
                      |..+..+++|+.|++.+|.+.+..+ ..+..++++    +.|++++|.........+..+++|+.|++++|.+....|+.
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSL----QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTC----CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             hhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCC----CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence            5566777778888777776654433 445555555    78888877654443445777788888888888777666543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.78  E-value=6.7e-19  Score=156.74  Aligned_cols=209  Identities=21%  Similarity=0.184  Sum_probs=131.6

Q ss_pred             eEEecCCCCCCCc--cccccccceEEEeecccccccC--CCCCCCCccEEEeccCC-ccccchHHhcCCCCCCEEEcccC
Q 017975          144 FLVRAGVGLTDAP--KIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNH-IEEITESFFQSLPSLRVLNLSVN  218 (363)
Q Consensus       144 ~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~L~~~  218 (363)
                      .+...+..+..++  .+..++++++|++++|.++.++  .+..+++|++|++++|. +..+++..+..+++|++|++++|
T Consensus        36 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n  115 (285)
T 1ozn_A           36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC  115 (285)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence            3444444444433  2455667777777777766653  35667777777777775 66665555677777777777777


Q ss_pred             CCcccc-CccccCCCCCCEEEccCCCCCccchh-hhccc-hhccccCcCccCcCCC---CCCCCC------------Ccc
Q 017975          219 HYLTEL-PVGISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEE---GNVLSD------------DAE  280 (363)
Q Consensus       219 ~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~---~~l~~l------------~~~  280 (363)
                       .++.+ |..++.+++|++|++++|.++.+|.. +..+. |+.|+++.|.++.+|.   .++.++            ..|
T Consensus       116 -~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  194 (285)
T 1ozn_A          116 -GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP  194 (285)
T ss_dssp             -CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             -cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH
Confidence             34443 55566777777777777777766543 56666 7777777777666654   222222            235


Q ss_pred             cchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975          281 SLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       281 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  359 (363)
                      ..+..+++|+.|++.+|.+.+.. ...+..++++    +.|++++|+.... .....-...++.+..+.+...-..|+.
T Consensus       195 ~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L----~~L~l~~N~~~c~-~~~~~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          195 HAFRDLGRLMTLYLFANNLSALP-TEALAPLRAL----QYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTC----CEEECCSSCEECS-GGGHHHHHHHHHCCSEECCCBEEESGG
T ss_pred             hHccCcccccEeeCCCCcCCcCC-HHHcccCccc----CEEeccCCCccCC-CCcHHHHHHHHhcccccCccccCCchH
Confidence            67888999999999999887643 3557777777    9999999874322 111112234555556666655555553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=1.3e-18  Score=156.74  Aligned_cols=187  Identities=19%  Similarity=0.318  Sum_probs=154.2

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~  222 (363)
                      ..+...+..+..++.+..+++++.|++++|.+..++.+..+++|++|++++|.+..++.  +..+++|++|++++| .++
T Consensus        44 ~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~  120 (308)
T 1h6u_A           44 TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTST-QIT  120 (308)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTS-CCC
T ss_pred             CEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCC-CCC
Confidence            45566677777777888889999999999999888888899999999999999888753  889999999999999 677


Q ss_pred             ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975          223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG  301 (363)
Q Consensus       223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~  301 (363)
                      .+| .++.+++|++|++++|.++.+|. +..+. |+.|+++.|.++.++          . +..+++|+.|++.+|.+.+
T Consensus       121 ~~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~----------~-l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          121 DVT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT----------P-LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             CCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG----------G-GTTCTTCCEEECCSSCCCC
T ss_pred             Cch-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh----------h-hcCCCCCCEEECCCCccCc
Confidence            777 48999999999999999998876 77777 999999999887765          3 7788999999999998876


Q ss_pred             CcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975          302 SRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED  354 (363)
Q Consensus       302 ~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~  354 (363)
                      ..+   +..++++    ++|++++|.....  ..+..+++|+.|++++|+...
T Consensus       188 ~~~---l~~l~~L----~~L~L~~N~l~~~--~~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          188 ISP---LASLPNL----IEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CGG---GGGCTTC----CEEECTTSCCCBC--GGGTTCTTCCEEEEEEEEEEC
T ss_pred             Chh---hcCCCCC----CEEEccCCccCcc--ccccCCCCCCEEEccCCeeec
Confidence            543   5666666    9999999874322  248889999999999998765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.77  E-value=2.9e-18  Score=153.02  Aligned_cols=192  Identities=21%  Similarity=0.188  Sum_probs=150.0

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      ..+.+.+..++.+|... .+.++.|++++|.++.++  .+..+++|++|++++|.++.+++  .+.+++|++|++++| .
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N-~   88 (290)
T 1p9a_G           13 LEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHN-Q   88 (290)
T ss_dssp             CEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSS-C
T ss_pred             cEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCC-c
Confidence            34556666677666422 268889999999888764  47788999999999998888776  378889999999998 7


Q ss_pred             ccccCccccCCCCCCEEEccCCCCCccch-hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEE
Q 017975          221 LTELPVGISSLVSLHHLDLSSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALS  298 (363)
Q Consensus       221 ~~~lp~~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~  298 (363)
                      ++.+|..+..+++|++|++++|.++.+|. .+..+. |+.|+++.|+++.+|.         ..+..+++|+.|++.+|.
T Consensus        89 l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~---------~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP---------GLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT---------TTTTTCTTCCEEECTTSC
T ss_pred             CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh---------hhcccccCCCEEECCCCc
Confidence            78888888889999999999999988874 577888 8998899998888773         456778899999999888


Q ss_pred             eccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975          299 LRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       299 ~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l  353 (363)
                      +.+. +...+..++++    +.|++++|... ..+..+..+.+|+.|++++|+..
T Consensus       160 l~~l-~~~~~~~l~~L----~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          160 LTEL-PAGLLNGLENL----DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CSCC-CTTTTTTCTTC----CEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCcc-CHHHhcCcCCC----CEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            8754 33555666766    89999987643 33556777788999999998864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.77  E-value=3.2e-18  Score=162.38  Aligned_cols=204  Identities=23%  Similarity=0.306  Sum_probs=116.0

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL  221 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~  221 (363)
                      .+.+.+..++.+|.. -.++++.|++++|.++.++  .+..+++|++|++++|.+..+++..|.++++|++|+|++| .+
T Consensus        58 ~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l  135 (452)
T 3zyi_A           58 KVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WL  135 (452)
T ss_dssp             EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred             EEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cC
Confidence            455556666666542 1256777777777777663  3667777777777777777777666777777777777777 55


Q ss_pred             cccCcc-ccCCCCCCEEEccCCCCCccch-hhhccc-hhccccCc-CccCcCCC---CCCCCC----------Ccccchh
Q 017975          222 TELPVG-ISSLVSLHHLDLSSTKVRGLPQ-ELKALV-LRMLHCGS-NHWPIAEE---GNVLSD----------DAESLMK  284 (363)
Q Consensus       222 ~~lp~~-i~~L~~L~~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~-~~l~~lp~---~~l~~l----------~~~~~l~  284 (363)
                      +.+|.. ++.+++|++|++++|.++.+|. .+..+. |+.|+++. +.+..+|.   .++.++          ...+.+.
T Consensus       136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~  215 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLT  215 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCT
T ss_pred             CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccccc
Confidence            555543 6677777777777777777654 344444 55555544 34443332   111111          1112344


Q ss_pred             hhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975          285 EIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED  354 (363)
Q Consensus       285 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~  354 (363)
                      .+++|+.|++.+|.+.+..+ ..+..++++    +.|++++|......+..+..+++|+.|++++|.+..
T Consensus       216 ~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  280 (452)
T 3zyi_A          216 PLVGLEELEMSGNHFPEIRP-GSFHGLSSL----KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS  280 (452)
T ss_dssp             TCTTCCEEECTTSCCSEECG-GGGTTCTTC----CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ccccccEEECcCCcCcccCc-ccccCccCC----CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence            45555555555555543322 334444444    555555554433333445555555555555555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.76  E-value=2e-18  Score=163.17  Aligned_cols=179  Identities=22%  Similarity=0.347  Sum_probs=107.2

Q ss_pred             cccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCc-cccCCCCCC
Q 017975          159 EEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLH  235 (363)
Q Consensus       159 ~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~  235 (363)
                      ..+++++.|++++|.++.++.  +..+++|++|++++|.+..+++..|.++++|++|++++|..+..+|. .+.++++|+
T Consensus       109 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~  188 (440)
T 3zyj_A          109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR  188 (440)
T ss_dssp             TTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred             cCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC
Confidence            334455555555555554442  44555555555555555555544455555555555555444444443 345555555


Q ss_pred             EEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCch
Q 017975          236 HLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL  314 (363)
Q Consensus       236 ~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l  314 (363)
                      +|++++|.++.+| .+..+. |+.|+++.|.++.++         |..+..+++|+.|++.+|.+.+..+ ..+..+++|
T Consensus       189 ~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~---------~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  257 (440)
T 3zyj_A          189 YLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIR---------PGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSL  257 (440)
T ss_dssp             EEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEEC---------TTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTC
T ss_pred             eecCCCCcCcccc-ccCCCcccCEEECCCCccCccC---------hhhhccCccCCEEECCCCceeEECh-hhhcCCCCC
Confidence            5555555555554 244444 555555555554443         3667788888888888888765543 556666666


Q ss_pred             hhhhheeeecccCCCCcCCcccccccccceeeeccCCC
Q 017975          315 QNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNL  352 (363)
Q Consensus       315 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~  352 (363)
                          +.|++++|.........+..+++|+.|++++|+.
T Consensus       258 ----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          258 ----VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             ----CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             ----CEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence                8899998875544455678888999999998874

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.76  E-value=3.1e-18  Score=154.22  Aligned_cols=180  Identities=21%  Similarity=0.296  Sum_probs=153.8

Q ss_pred             CCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCC
Q 017975          153 TDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLV  232 (363)
Q Consensus       153 ~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~  232 (363)
                      ........+++++.|++.++.++.++.+..+++|++|++++|.+..+++  +..+++|++|++++| .++.+| .++.++
T Consensus        32 ~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~  107 (308)
T 1h6u_A           32 TDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQ  107 (308)
T ss_dssp             TSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCT
T ss_pred             CceecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCC
Confidence            3334456778999999999999999999999999999999999999887  899999999999999 688876 799999


Q ss_pred             CCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCC
Q 017975          233 SLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKF  311 (363)
Q Consensus       233 ~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l  311 (363)
                      +|++|++++|.++.+|. +..+. |+.|+++.|.++.++           .+..+++|+.|++.+|.+.+..+   +..+
T Consensus       108 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-----------~l~~l~~L~~L~l~~n~l~~~~~---l~~l  172 (308)
T 1h6u_A          108 SIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS-----------PLAGLTNLQYLSIGNAQVSDLTP---LANL  172 (308)
T ss_dssp             TCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-----------GGGGCTTCCEEECCSSCCCCCGG---GTTC
T ss_pred             CCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCc-----------cccCCCCccEEEccCCcCCCChh---hcCC
Confidence            99999999999999875 88888 999999999988776           27889999999999998876432   6666


Q ss_pred             CchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccc
Q 017975          312 PKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNV  357 (363)
Q Consensus       312 ~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~  357 (363)
                      +++    +.|++++|....  +..+..+++|+.|++++|.+....+
T Consensus       173 ~~L----~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~N~l~~~~~  212 (308)
T 1h6u_A          173 SKL----TTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP  212 (308)
T ss_dssp             TTC----CEEECCSSCCCC--CGGGGGCTTCCEEECTTSCCCBCGG
T ss_pred             CCC----CEEECCCCccCc--ChhhcCCCCCCEEEccCCccCcccc
Confidence            666    999999986432  2348899999999999999876543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.76  E-value=4.7e-18  Score=160.69  Aligned_cols=209  Identities=22%  Similarity=0.267  Sum_probs=153.1

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL  221 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~  221 (363)
                      .+.+.+..++.+|... .++++.|++++|.++.++  .+..+++|++|++++|.+..+++..|.++++|++|+|++| .+
T Consensus        47 ~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l  124 (440)
T 3zyj_A           47 KVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RL  124 (440)
T ss_dssp             EEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CC
T ss_pred             EEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cC
Confidence            4566666677776522 267888999988888775  4778888999999999888888777888889999999988 66


Q ss_pred             cccCc-cccCCCCCCEEEccCCCCCccch-hhhccc-hhccccCc-CccCcCCC---CCCCCC----------Ccccchh
Q 017975          222 TELPV-GISSLVSLHHLDLSSTKVRGLPQ-ELKALV-LRMLHCGS-NHWPIAEE---GNVLSD----------DAESLMK  284 (363)
Q Consensus       222 ~~lp~-~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~-~~l~~lp~---~~l~~l----------~~~~~l~  284 (363)
                      +.+|. .+..+++|++|++++|.+..+|. .+..+. |+.|+++. +.+..++.   .++.++          ...+.+.
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~  204 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLT  204 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCT
T ss_pred             CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccC
Confidence            67665 58888889999998888888765 566666 77777765 45555553   112111          1112466


Q ss_pred             hhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975          285 EIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       285 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  359 (363)
                      .+++|+.|++.+|.+.+..+ ..+..++++    +.|++++|......+..+.++++|+.|++++|.+....++.
T Consensus       205 ~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  274 (440)
T 3zyj_A          205 PLIKLDELDLSGNHLSAIRP-GSFQGLMHL----QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL  274 (440)
T ss_dssp             TCSSCCEEECTTSCCCEECT-TTTTTCTTC----CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             CCcccCEEECCCCccCccCh-hhhccCccC----CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence            77888888888887765443 566777766    89999988765555667889999999999999887665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.76  E-value=4.3e-18  Score=150.78  Aligned_cols=186  Identities=21%  Similarity=0.175  Sum_probs=92.1

Q ss_pred             cceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEc
Q 017975          163 GVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDL  239 (363)
Q Consensus       163 ~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l  239 (363)
                      ++++|++++|.++.++  .+..+++|++|++++|.+..+++..+.++++|++|++++| .++.++ ..++++++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEEC
Confidence            4555555555554443  2444555555555555555444444455555555555555 233222 34445555555555


Q ss_pred             cCCCCCccch-hhhccc-hhccccCcCccCcC--CC--C---CCCCC---------Ccccchhhhcccc----ccceEEE
Q 017975          240 SSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIA--EE--G---NVLSD---------DAESLMKEIHCLE----QLNLIAL  297 (363)
Q Consensus       240 ~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~l--p~--~---~l~~l---------~~~~~l~~l~~L~----~L~l~~~  297 (363)
                      ++|.+..++. .+..++ |+.|+++.|.++.+  |.  .   ++..+         ..+..+..+.+|+    .|++.+|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            5554444433 344444 44444444444431  21  0   00000         0123455555555    4444455


Q ss_pred             EeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCc
Q 017975          298 SLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDW  355 (363)
Q Consensus       298 ~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~  355 (363)
                      .+.+..+ . .....+    |+.|++++|.........+..+++|+.|++++|+....
T Consensus       188 ~l~~~~~-~-~~~~~~----L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          188 PMNFIQP-G-AFKEIR----LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             CCCEECT-T-SSCSCC----EEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             cccccCc-c-ccCCCc----ccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            4443221 1 112223    48899998875444344578899999999998876643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.76  E-value=1.4e-18  Score=159.58  Aligned_cols=200  Identities=24%  Similarity=0.343  Sum_probs=159.2

Q ss_pred             ceeEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCC
Q 017975          142 EKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH  219 (363)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~  219 (363)
                      .......+..++.+|.. -.+++++|++++|.++.++.  +..+++|++|++++|.++.+++..+.++++|++|++++| 
T Consensus        33 ~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-  110 (353)
T 2z80_A           33 NGICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-  110 (353)
T ss_dssp             TSEEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred             CeEeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-
Confidence            34456666777777752 23589999999999998875  889999999999999999988877999999999999999 


Q ss_pred             CccccCcc-ccCCCCCCEEEccCCCCCccch--hhhccc-hhccccCcC-ccCcCCCCCCCCCCcccchhhhccccccce
Q 017975          220 YLTELPVG-ISSLVSLHHLDLSSTKVRGLPQ--ELKALV-LRMLHCGSN-HWPIAEEGNVLSDDAESLMKEIHCLEQLNL  294 (363)
Q Consensus       220 ~~~~lp~~-i~~L~~L~~L~l~~~~l~~lP~--~i~~L~-L~~L~~~~~-~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l  294 (363)
                      .++.+|.. ++++++|++|++++|.++.+|.  .+..++ |+.|+++.| .+..++.         ..+..+++|+.|++
T Consensus       111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~---------~~~~~l~~L~~L~l  181 (353)
T 2z80_A          111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR---------KDFAGLTFLEELEI  181 (353)
T ss_dssp             CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT---------TTTTTCCEEEEEEE
T ss_pred             cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH---------HHccCCCCCCEEEC
Confidence            77788876 8999999999999999999987  678888 999999887 4666652         56778889999999


Q ss_pred             EEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccc
Q 017975          295 IALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNV  357 (363)
Q Consensus       295 ~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~  357 (363)
                      .+|.+.+..+ ..+..++++    ++|++++|.........+..+++|+.|++++|......+
T Consensus       182 ~~n~l~~~~~-~~l~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  239 (353)
T 2z80_A          182 DASDLQSYEP-KSLKSIQNV----SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF  239 (353)
T ss_dssp             EETTCCEECT-TTTTTCSEE----EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred             CCCCcCccCH-HHHhccccC----CeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence            9888765533 566777776    999999877422222234568899999999998776543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.75  E-value=2e-18  Score=155.88  Aligned_cols=192  Identities=17%  Similarity=0.171  Sum_probs=152.2

Q ss_pred             ccceEEEeecccccc---cC-CCCCCCCccEEEecc-CCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCE
Q 017975          162 EGVKRISLMENEIQS---LP-QIPTCPRLQTLLLEY-NHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHH  236 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~---l~-~~~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~  236 (363)
                      .+++.|+++++.+..   +| .+..+++|++|++++ |.+....+..++++++|++|++++|.....+|..++++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            479999999999984   55 578999999999995 8888655555999999999999999544589999999999999


Q ss_pred             EEccCCCCC-ccchhhhccc-hhccccCcCccC-cCCC--C----CCCCC---------CcccchhhhccccccceEEEE
Q 017975          237 LDLSSTKVR-GLPQELKALV-LRMLHCGSNHWP-IAEE--G----NVLSD---------DAESLMKEIHCLEQLNLIALS  298 (363)
Q Consensus       237 L~l~~~~l~-~lP~~i~~L~-L~~L~~~~~~l~-~lp~--~----~l~~l---------~~~~~l~~l~~L~~L~l~~~~  298 (363)
                      |++++|.+. .+|..+..++ |+.|+++.|.++ .+|.  .    ++..+         ..|..+..++ |+.|++.+|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            999999998 6899999999 999999999987 6664  2    22222         4556666676 8888888887


Q ss_pred             eccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccccc
Q 017975          299 LRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCA  360 (363)
Q Consensus       299 ~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~  360 (363)
                      +.+..+ ..+..++++    +.|++++|..... ++.+..+++|++|++++|.+.+.+|+..
T Consensus       209 l~~~~~-~~~~~l~~L----~~L~L~~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  264 (313)
T 1ogq_A          209 LEGDAS-VLFGSDKNT----QKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             EEECCG-GGCCTTSCC----SEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred             ccCcCC-HHHhcCCCC----CEEECCCCceeee-cCcccccCCCCEEECcCCcccCcCChHH
Confidence            776544 556666666    8899988764322 4447788999999999999887777643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.75  E-value=3.1e-18  Score=148.36  Aligned_cols=187  Identities=13%  Similarity=0.213  Sum_probs=150.8

Q ss_pred             CCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCC-ccccchHHhcCCCCCCEEEccc-CCCccccC-c
Q 017975          152 LTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNH-IEEITESFFQSLPSLRVLNLSV-NHYLTELP-V  226 (363)
Q Consensus       152 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~L~~-~~~~~~lp-~  226 (363)
                      ++.+|.  -.++++.|++++|.++.++.  +..+++|++|++++|. ++.+++..|.++++|++|++++ | .++.+| .
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~   99 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPD   99 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTT
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHH
Confidence            556666  33589999999999999875  7889999999999997 9999887799999999999998 6 777776 4


Q ss_pred             cccCCCCCCEEEccCCCCCccchhhhccc-hh---ccccCcC-ccCcCCCCCCCCCCcccchhhhcccc-ccceEEEEec
Q 017975          227 GISSLVSLHHLDLSSTKVRGLPQELKALV-LR---MLHCGSN-HWPIAEEGNVLSDDAESLMKEIHCLE-QLNLIALSLR  300 (363)
Q Consensus       227 ~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~---~L~~~~~-~l~~lp~~~l~~l~~~~~l~~l~~L~-~L~l~~~~~~  300 (363)
                      .+..+++|++|++++|.++.+|. +..+. |+   .|+++.| .++.+|.         ..+..+++|+ .|++.+|.+.
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~---------~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV---------NAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT---------TTTTTTBSSEEEEECCSCCCC
T ss_pred             HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCc---------ccccchhcceeEEEcCCCCCc
Confidence            68899999999999999999997 77776 66   9999999 8888873         4577889999 9999988876


Q ss_pred             cCcccccccCCCchhhhhheeeecccCC-CCcCCcccccc-cccceeeeccCCCCCccc
Q 017975          301 GSRGVENFLKFPKLQNITQALHIKDCNS-LPLNLLHLANM-EHLQLFSIWDSNLEDWNV  357 (363)
Q Consensus       301 ~~~~~~~l~~l~~l~~~L~~L~l~~~~~-~~~~~~~l~~l-~~L~~L~l~~c~~l~~~~  357 (363)
                       ..+...+.. +++    +.|++++|.. .......+..+ ++|+.|++++|++....+
T Consensus       170 -~i~~~~~~~-~~L----~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~  222 (239)
T 2xwt_C          170 -SVQGYAFNG-TKL----DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS  222 (239)
T ss_dssp             -EECTTTTTT-CEE----EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred             -ccCHhhcCC-CCC----CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence             333233333 444    9999999863 33334568888 999999999998875443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.75  E-value=2.5e-18  Score=173.59  Aligned_cols=197  Identities=21%  Similarity=0.224  Sum_probs=123.9

Q ss_pred             ccccccceEEEeecccccc-cC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCC
Q 017975          158 IEEWEGVKRISLMENEIQS-LP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLH  235 (363)
Q Consensus       158 ~~~~~~l~~L~l~~~~~~~-l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~  235 (363)
                      +..+++++.|++.+|.+.. +| .+..+++|++|++++|.+....+..+.++++|++|++++|.....+|..++.+++|+
T Consensus       438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  517 (768)
T 3rgz_A          438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA  517 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence            3344555555555555542 23 245667777777777777755454577777788888887755557777778888888


Q ss_pred             EEEccCCCCC-ccchhhhccc-hhccccCcCccC-cCCC-----------------------------------------
Q 017975          236 HLDLSSTKVR-GLPQELKALV-LRMLHCGSNHWP-IAEE-----------------------------------------  271 (363)
Q Consensus       236 ~L~l~~~~l~-~lP~~i~~L~-L~~L~~~~~~l~-~lp~-----------------------------------------  271 (363)
                      +|++++|.+. .+|..++.++ |+.|+++.|.+. .+|.                                         
T Consensus       518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  597 (768)
T 3rgz_A          518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ  597 (768)
T ss_dssp             EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred             EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence            8888888777 4677777777 777777777664 3332                                         


Q ss_pred             -------------------------------------------CCCCCCCcccchhhhccccccceEEEEeccCcccccc
Q 017975          272 -------------------------------------------GNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENF  308 (363)
Q Consensus       272 -------------------------------------------~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l  308 (363)
                                                                 .|..+..+|..++.+++|+.|++++|.+++..| ..+
T Consensus       598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~l  676 (768)
T 3rgz_A          598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP-DEV  676 (768)
T ss_dssp             TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGG
T ss_pred             cccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC-hHH
Confidence                                                       000111445556666666666666666665554 445


Q ss_pred             cCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975          309 LKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       309 ~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  359 (363)
                      +.++++    +.|++++|+.....|..+.++++|++|++++|+..+.+|+.
T Consensus       677 ~~L~~L----~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          677 GDLRGL----NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             GGCTTC----CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             hCCCCC----CEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            555555    66666666554444556666667777777777666666653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=9.3e-18  Score=146.53  Aligned_cols=168  Identities=22%  Similarity=0.341  Sum_probs=94.6

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL  221 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~  221 (363)
                      .+.+.+..++.+|.... +.++.|++++|.+..++.  +..+++|++|++++|.++.+++..+.++++|++|++++| .+
T Consensus        18 ~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l   95 (251)
T 3m19_A           18 EVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QL   95 (251)
T ss_dssp             EEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CC
T ss_pred             EEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cc
Confidence            34455555555543221 456666666666665542  556666666666666666666555666666666666666 44


Q ss_pred             cccC-ccccCCCCCCEEEccCCCCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEE
Q 017975          222 TELP-VGISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALS  298 (363)
Q Consensus       222 ~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~  298 (363)
                      +.+| ..++.+++|++|++++|.++.+|.. +..+. |+.|+++.|.++.+|.         ..+..+++|+.|++.+|.
T Consensus        96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A           96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA---------GAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSSC
T ss_pred             cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH---------HHcCcCcCCCEEECCCCc
Confidence            4443 3445666666666666666666554 34555 6666666666655552         245555666666666665


Q ss_pred             eccCcccccccCCCchhhhhheeeecccC
Q 017975          299 LRGSRGVENFLKFPKLQNITQALHIKDCN  327 (363)
Q Consensus       299 ~~~~~~~~~l~~l~~l~~~L~~L~l~~~~  327 (363)
                      +.+..+ ..+..++++    +.|++++|.
T Consensus       167 l~~~~~-~~~~~l~~L----~~L~l~~N~  190 (251)
T 3m19_A          167 LQSVPH-GAFDRLGKL----QTITLFGNQ  190 (251)
T ss_dssp             CSCCCT-TTTTTCTTC----CEEECCSCC
T ss_pred             CCccCH-HHHhCCCCC----CEEEeeCCc
Confidence            553322 334444444    556666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.75  E-value=6.8e-18  Score=150.57  Aligned_cols=180  Identities=22%  Similarity=0.218  Sum_probs=139.2

Q ss_pred             ccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEE
Q 017975          158 IEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHL  237 (363)
Q Consensus       158 ~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L  237 (363)
                      +..+++++.+++.++.++.+|... .++++.|++++|.+..+++..+.++++|++|++++| .++.+|.. +.+++|++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L   82 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL   82 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence            445567888888888888887422 268888899888888887777888888999999888 67777754 788888999


Q ss_pred             EccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhh
Q 017975          238 DLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQN  316 (363)
Q Consensus       238 ~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~  316 (363)
                      ++++|.++.+|..+..+. |+.|+++.|+++.+|.         ..+..+++|+.|++.+|.+.+. +...+..++++  
T Consensus        83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~---------~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L--  150 (290)
T 1p9a_G           83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL---------GALRGLGELQELYLKGNELKTL-PPGLLTPTPKL--  150 (290)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS---------STTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTC--
T ss_pred             ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCH---------HHHcCCCCCCEEECCCCCCCcc-ChhhcccccCC--
Confidence            998888888888888888 8888888888887763         5577788888888888887654 33455666666  


Q ss_pred             hhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975          317 ITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED  354 (363)
Q Consensus       317 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~  354 (363)
                        +.|++++|.........+..+++|+.|++++|.+..
T Consensus       151 --~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  186 (290)
T 1p9a_G          151 --EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT  186 (290)
T ss_dssp             --CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             --CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence              888888876544433456778888888988887763

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=4.3e-18  Score=152.00  Aligned_cols=177  Identities=23%  Similarity=0.308  Sum_probs=138.1

Q ss_pred             CCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCC
Q 017975          153 TDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLV  232 (363)
Q Consensus       153 ~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~  232 (363)
                      ........+++++.|++++|.++.++.+..+++|++|++++|.++.+++  +.++++|++|++++| .++.+| .++.++
T Consensus        37 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~  112 (291)
T 1h6t_A           37 TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLS-SLKDLK  112 (291)
T ss_dssp             TSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGG-GGTTCT
T ss_pred             ccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCCh-hhccCC
Confidence            3344456678888899988888888888888889999999888888776  788889999999988 677766 588888


Q ss_pred             CCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCC
Q 017975          233 SLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKF  311 (363)
Q Consensus       233 ~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l  311 (363)
                      +|++|++++|.++.+| .+..+. |+.|+++.|.++.++           .+..+++|+.|++.+|.+.+..+   +..+
T Consensus       113 ~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-----------~l~~l~~L~~L~L~~N~l~~~~~---l~~l  177 (291)
T 1h6t_A          113 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-----------VLSRLTKLDTLSLEDNQISDIVP---LAGL  177 (291)
T ss_dssp             TCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-----------GGGGCTTCSEEECCSSCCCCCGG---GTTC
T ss_pred             CCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcch-----------hhccCCCCCEEEccCCccccchh---hcCC
Confidence            8999999988888874 577777 888888888876653           57778888888888887766543   5666


Q ss_pred             CchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975          312 PKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED  354 (363)
Q Consensus       312 ~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~  354 (363)
                      +++    +.|++++|... . ++.+..+++|+.|++++|+...
T Consensus       178 ~~L----~~L~L~~N~i~-~-l~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          178 TKL----QNLYLSKNHIS-D-LRALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TTC----CEEECCSSCCC-B-CGGGTTCTTCSEEEEEEEEEEC
T ss_pred             Ccc----CEEECCCCcCC-C-ChhhccCCCCCEEECcCCcccC
Confidence            666    88888887532 2 3457888888899988887654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.75  E-value=4.9e-18  Score=161.14  Aligned_cols=189  Identities=19%  Similarity=0.198  Sum_probs=125.3

Q ss_pred             ccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCc-cccCCCCC
Q 017975          158 IEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSL  234 (363)
Q Consensus       158 ~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L  234 (363)
                      +..+++++.|++++|.++.++  .+..+++|++|++++|.++.+++..+..+++|++|+|++| .++.+|. .+..+++|
T Consensus        95 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L  173 (452)
T 3zyi_A           95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSL  173 (452)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTC
T ss_pred             cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcc
Confidence            445566666666666666654  3556666666666666666666665666666666666666 4444443 45566666


Q ss_pred             CEEEccCC-CCCccch-hhhccc-hhccccCcCccCcCCC-CC---CCCC---------CcccchhhhccccccceEEEE
Q 017975          235 HHLDLSST-KVRGLPQ-ELKALV-LRMLHCGSNHWPIAEE-GN---VLSD---------DAESLMKEIHCLEQLNLIALS  298 (363)
Q Consensus       235 ~~L~l~~~-~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~-~~---l~~l---------~~~~~l~~l~~L~~L~l~~~~  298 (363)
                      ++|++++| .+..+|. .+..+. |+.|+++.|.++.+|. ..   +..+         ..|..+..+++|+.|++.+|.
T Consensus       174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  253 (452)
T 3zyi_A          174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ  253 (452)
T ss_dssp             CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred             cEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence            66666663 4555544 345555 6666666666665554 22   2111         235678899999999999998


Q ss_pred             eccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCC
Q 017975          299 LRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNL  352 (363)
Q Consensus       299 ~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~  352 (363)
                      +.+..+ ..+..++++    +.|++++|.........+..+++|+.|++++|+.
T Consensus       254 l~~~~~-~~~~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          254 VSLIER-NAFDGLASL----VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CCEECT-TTTTTCTTC----CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             CceECH-HHhcCCCCC----CEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            876544 567777776    9999999876544455688899999999999974

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.75  E-value=1.9e-17  Score=150.54  Aligned_cols=206  Identities=20%  Similarity=0.270  Sum_probs=124.1

Q ss_pred             EEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975          145 LVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~  222 (363)
                      +.+.+..+..+|... .+.++.|++++|.++.++.  +..+++|++|++++|.++.+.+..+.++++|++|++++| .++
T Consensus        36 l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~  113 (330)
T 1xku_A           36 VQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLK  113 (330)
T ss_dssp             EECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCS
T ss_pred             EEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCC
Confidence            333444444444311 2456666666666665542  555666666666666666554444566666666666666 444


Q ss_pred             ccCcc----------------------ccCCCCCCEEEccCCCCCc---cchhhhccc-hhccccCcCccCcCCC---CC
Q 017975          223 ELPVG----------------------ISSLVSLHHLDLSSTKVRG---LPQELKALV-LRMLHCGSNHWPIAEE---GN  273 (363)
Q Consensus       223 ~lp~~----------------------i~~L~~L~~L~l~~~~l~~---lP~~i~~L~-L~~L~~~~~~l~~lp~---~~  273 (363)
                      .+|..                      ++++++|++|++++|.+..   .|..+..++ |+.|+++.|.++.+|.   .+
T Consensus       114 ~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~  193 (330)
T 1xku_A          114 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS  193 (330)
T ss_dssp             BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTT
T ss_pred             ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccccc
Confidence            55443                      4455555555555555542   244455555 6666677777666664   22


Q ss_pred             CCCC---------CcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccce
Q 017975          274 VLSD---------DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQL  344 (363)
Q Consensus       274 l~~l---------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  344 (363)
                      +..+         ..+..+..+++|+.|++.+|.+.+..+ ..+..++++    ++|++++|... ..+..+..+++|+.
T Consensus       194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L----~~L~L~~N~l~-~lp~~l~~l~~L~~  267 (330)
T 1xku_A          194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHL----RELHLNNNKLV-KVPGGLADHKYIQV  267 (330)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTC----CEEECCSSCCS-SCCTTTTTCSSCCE
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCC----CEEECCCCcCc-cCChhhccCCCcCE
Confidence            2222         234567788888888888887765433 456666666    88999887643 44556888888999


Q ss_pred             eeeccCCCCCcccc
Q 017975          345 FSIWDSNLEDWNVD  358 (363)
Q Consensus       345 L~l~~c~~l~~~~~  358 (363)
                      |++++|++....+.
T Consensus       268 L~l~~N~i~~~~~~  281 (330)
T 1xku_A          268 VYLHNNNISAIGSN  281 (330)
T ss_dssp             EECCSSCCCCCCTT
T ss_pred             EECCCCcCCccChh
Confidence            99998887765443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.74  E-value=1.2e-17  Score=147.35  Aligned_cols=180  Identities=21%  Similarity=0.262  Sum_probs=150.5

Q ss_pred             cceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccc-cCCCCCCEEEccC
Q 017975          163 GVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI-SSLVSLHHLDLSS  241 (363)
Q Consensus       163 ~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~L~l~~  241 (363)
                      ..+.++++++.++.+|... .++++.|++++|.+..+++..|.++++|++|++++| .++.+|..+ ..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence            5788999999999988532 268999999999999999877999999999999999 777887664 8899999999999


Q ss_pred             CCCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhh
Q 017975          242 TKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQ  319 (363)
Q Consensus       242 ~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~  319 (363)
                      |.+..+|.. +..+. |+.|+++.|.++.+|.         ..+..+++|+.|++.+|.+.+.. ...+..++++    +
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L----~  160 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPP---------RVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSL----K  160 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC----C
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCH---------HHhCcCcCCCEEECCCCcCCccC-HhHccCCccc----c
Confidence            999999865 57788 9999999999988873         56788999999999999887543 3456677776    9


Q ss_pred             eeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975          320 ALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD  358 (363)
Q Consensus       320 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~  358 (363)
                      .|++++|......+..+..+++|+.|++++|.+....+.
T Consensus       161 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  199 (270)
T 2o6q_A          161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG  199 (270)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             eeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence            999999875555455688999999999999988765544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.74  E-value=4.3e-17  Score=148.28  Aligned_cols=205  Identities=22%  Similarity=0.280  Sum_probs=131.3

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL  221 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~  221 (363)
                      .+.+.+..+..+|... .++++.|++++|.++.++  .+..+++|++|++++|.++.+++..+.++++|++|++++| .+
T Consensus        37 ~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l  114 (332)
T 2ft3_A           37 VVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HL  114 (332)
T ss_dssp             EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CC
T ss_pred             EEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cC
Confidence            3444555555555322 357777888777777764  3677777888888777777776666777777777777777 56


Q ss_pred             cccCccccCCCCCCEEEccCCCCCccchh-hhccc-hhccccCcCcc-------------------------CcCCC---
Q 017975          222 TELPVGISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHW-------------------------PIAEE---  271 (363)
Q Consensus       222 ~~lp~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l-------------------------~~lp~---  271 (363)
                      +.+|..+.  ++|++|++++|.+..+|.. +..++ |+.|+++.|.+                         +.+|.   
T Consensus       115 ~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~  192 (332)
T 2ft3_A          115 VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP  192 (332)
T ss_dssp             CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC
T ss_pred             CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc
Confidence            66665554  5666666666666655543 44444 55555554444                         44443   


Q ss_pred             CCCCCC---------CcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCccccccccc
Q 017975          272 GNVLSD---------DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHL  342 (363)
Q Consensus       272 ~~l~~l---------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L  342 (363)
                      .++..+         ..+..+..+++|+.|++.+|.+.+..+ ..+..++++    +.|++++|... ..+..+..+++|
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L----~~L~L~~N~l~-~lp~~l~~l~~L  266 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTL----RELHLDNNKLS-RVPAGLPDLKLL  266 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTC----CEEECCSSCCC-BCCTTGGGCTTC
T ss_pred             CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCC----CEEECCCCcCe-ecChhhhcCccC
Confidence            122222         223567778888888888887765433 456666666    88888887643 445568888888


Q ss_pred             ceeeeccCCCCCcccc
Q 017975          343 QLFSIWDSNLEDWNVD  358 (363)
Q Consensus       343 ~~L~l~~c~~l~~~~~  358 (363)
                      +.|++++|++....++
T Consensus       267 ~~L~l~~N~l~~~~~~  282 (332)
T 2ft3_A          267 QVVYLHTNNITKVGVN  282 (332)
T ss_dssp             CEEECCSSCCCBCCTT
T ss_pred             CEEECCCCCCCccChh
Confidence            8888888887765544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.74  E-value=8.2e-18  Score=156.46  Aligned_cols=110  Identities=25%  Similarity=0.399  Sum_probs=60.9

Q ss_pred             cccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcc-ccCCCCCC
Q 017975          159 EEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLH  235 (363)
Q Consensus       159 ~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~  235 (363)
                      ..+++++.|++++|.++.++  .+..+++|++|++++|.+..+++..++++++|++|++++| .++.+|.. ++.+++|+
T Consensus        66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCc
Confidence            34455666666666555543  3455566666666666655555554555666666666665 45555544 25556666


Q ss_pred             EEEccCCCCCccch-hhhccc-hhccccCcCccCcC
Q 017975          236 HLDLSSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIA  269 (363)
Q Consensus       236 ~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~l  269 (363)
                      +|++++|.+..+|. .+..++ |+.|+++.|.++.+
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             EEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            66666665555432 345555 55555555555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=7.1e-18  Score=165.54  Aligned_cols=187  Identities=20%  Similarity=0.279  Sum_probs=93.6

Q ss_pred             ccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcc-ccCCCCCCE
Q 017975          160 EWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHH  236 (363)
Q Consensus       160 ~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~  236 (363)
                      .+++++.|++++|.++.++  .+..+++|++|++++|.+..+++..|+++++|++|+|++| .++.+|.. ++.+++|++
T Consensus        73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~  151 (597)
T 3oja_B           73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTT  151 (597)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCE
Confidence            3445555555555555443  3445555555555555555555544455555555555555 44444443 245555555


Q ss_pred             EEccCCCCCccch-hhhccc-hhccccCcCccCcCCCC------------------------------------------
Q 017975          237 LDLSSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIAEEG------------------------------------------  272 (363)
Q Consensus       237 L~l~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~~------------------------------------------  272 (363)
                      |++++|.+..+|+ .++.++ |+.|+++.|.++.++.+                                          
T Consensus       152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~  231 (597)
T 3oja_B          152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN  231 (597)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred             EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence            5555555554432 344444 55555555544433320                                          


Q ss_pred             -CCCCC-------CcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccce
Q 017975          273 -NVLSD-------DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQL  344 (363)
Q Consensus       273 -~l~~l-------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  344 (363)
                       ++..+       ..+..+..+++|+.|++.+|.+.+..+ ..+..++++    +.|++++|.... .+..+..+++|+.
T Consensus       232 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L----~~L~Ls~N~l~~-l~~~~~~l~~L~~  305 (597)
T 3oja_B          232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRL----ERLYISNNRLVA-LNLYGQPIPTLKV  305 (597)
T ss_dssp             SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES-GGGTTCSSC----CEEECTTSCCCE-EECSSSCCTTCCE
T ss_pred             CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCH-HHhcCccCC----CEEECCCCCCCC-CCcccccCCCCcE
Confidence             11111       223456667777777777776655433 445555555    666666654211 1233344555555


Q ss_pred             eeeccCCCC
Q 017975          345 FSIWDSNLE  353 (363)
Q Consensus       345 L~l~~c~~l  353 (363)
                      |++++|.+.
T Consensus       306 L~Ls~N~l~  314 (597)
T 3oja_B          306 LDLSHNHLL  314 (597)
T ss_dssp             EECCSSCCC
T ss_pred             EECCCCCCC
Confidence            555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.74  E-value=1.1e-17  Score=148.10  Aligned_cols=188  Identities=17%  Similarity=0.175  Sum_probs=131.5

Q ss_pred             EEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEccCCCCC
Q 017975          167 ISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVR  245 (363)
Q Consensus       167 L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~  245 (363)
                      ++..+..+..+|... .++|++|++++|.++.+++..+.++++|++|++++| .++.+| ..++.+++|++|++++|.++
T Consensus        12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           12 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             EECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccC
Confidence            344445566666521 257999999999999998867999999999999999 666665 47999999999999999999


Q ss_pred             ccc-hhhhccc-hhccccCcCccCcCCC---CCCCCC-------------CcccchhhhccccccceEEEEeccCccccc
Q 017975          246 GLP-QELKALV-LRMLHCGSNHWPIAEE---GNVLSD-------------DAESLMKEIHCLEQLNLIALSLRGSRGVEN  307 (363)
Q Consensus       246 ~lP-~~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l-------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  307 (363)
                      .+| ..+..+. |+.|+++.|.+..++.   .++.++             ..|..+..+++|+.|++.+|.+.+..+ ..
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~-~~  168 (276)
T 2z62_A           90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TD  168 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-GG
T ss_pred             ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH-HH
Confidence            886 5688888 9999999999888765   222221             246667777777777777776654322 33


Q ss_pred             ccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975          308 FLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD  358 (363)
Q Consensus       308 l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~  358 (363)
                      +..+.++......|++++|..... +.......+|+.|++++|.+....++
T Consensus       169 ~~~l~~L~~l~l~L~ls~n~l~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~  218 (276)
T 2z62_A          169 LRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLKELALDTNQLKSVPDG  218 (276)
T ss_dssp             GHHHHTCTTCCEEEECCSSCCCEE-CTTSSCSCCEEEEECCSSCCSCCCTT
T ss_pred             hhhhhhccccceeeecCCCccccc-CccccCCCcccEEECCCCceeecCHh
Confidence            444444321111677777654322 22233334789999999887655544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.74  E-value=1.2e-17  Score=159.47  Aligned_cols=204  Identities=24%  Similarity=0.293  Sum_probs=134.8

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      ..+.+.+..++.+|.. -.++++.|++++|.++.++  .+..+++|++|++++|.+..+++..|.++++|++|+|++| .
T Consensus        14 ~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~   91 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-R   91 (477)
T ss_dssp             TEEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred             CEEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-c
Confidence            4566677777777752 2368999999999998875  4788999999999999999887777999999999999999 6


Q ss_pred             ccccCcc-ccCCCCCCEEEccCCCCCcc-chhhhccc-hhccccCcCccCcCCC---CCCCCC------------Ccccc
Q 017975          221 LTELPVG-ISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWPIAEE---GNVLSD------------DAESL  282 (363)
Q Consensus       221 ~~~lp~~-i~~L~~L~~L~l~~~~l~~l-P~~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l------------~~~~~  282 (363)
                      ++.+|.. ++++++|++|++++|.+..+ |..+..+. |+.|+++.|.+..++.   .++.++            ..+..
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  171 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA  171 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence            7777754 68899999999999998886 55778888 9999999888877653   111111            01122


Q ss_pred             hhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975          283 MKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       283 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l  353 (363)
                      +..+++|+.|++.+|.+.+..+ ..+..++++    +.|++++|......+.......+|+.|++++|.+.
T Consensus       172 l~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  237 (477)
T 2id5_A          172 LSHLHGLIVLRLRHLNINAIRD-YSFKRLYRL----KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT  237 (477)
T ss_dssp             HTTCTTCCEEEEESCCCCEECT-TCSCSCTTC----CEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred             hcccCCCcEEeCCCCcCcEeCh-hhcccCccc----ceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence            3444444445444444433221 233333333    55555555443333333333345566666655544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.73  E-value=2.6e-18  Score=169.78  Aligned_cols=172  Identities=14%  Similarity=0.156  Sum_probs=124.3

Q ss_pred             CCCCCCccEEEeccCCccc------------------cchHHhc--CCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 017975          180 IPTCPRLQTLLLEYNHIEE------------------ITESFFQ--SLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDL  239 (363)
Q Consensus       180 ~~~l~~L~~L~l~~~~l~~------------------~~~~~~~--~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l  239 (363)
                      +.++++|++|++++|.++.                  +|+. ++  ++++|++|++++|.....+|..++++++|++|++
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  280 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV  280 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence            6788999999999999888                  6666 77  8999999999999778889999999999999999


Q ss_pred             cCCC-CCc--cchhhhcc------c-hhccccCcCccCcCCC----CCCCCC------------Ccccchhhhccccccc
Q 017975          240 SSTK-VRG--LPQELKAL------V-LRMLHCGSNHWPIAEE----GNVLSD------------DAESLMKEIHCLEQLN  293 (363)
Q Consensus       240 ~~~~-l~~--lP~~i~~L------~-L~~L~~~~~~l~~lp~----~~l~~l------------~~~~~l~~l~~L~~L~  293 (363)
                      ++|. ++.  +|..++.+      + |+.|+++.|.++.+|.    .++.++            .+| .+..+++|+.|+
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~  359 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN  359 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence            9997 885  89988887      6 9999999999888874    222222            333 556666667777


Q ss_pred             eEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCccccccc--ccceeeeccCCCCCccccc
Q 017975          294 LIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANME--HLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       294 l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~c~~l~~~~~~  359 (363)
                      +.+|.+. ..+ ..+..+++   .|++|++++|... ..+..+..+.  +|+.|++++|.+....|+.
T Consensus       360 L~~N~l~-~lp-~~l~~l~~---~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  421 (636)
T 4eco_A          360 LAYNQIT-EIP-ANFCGFTE---QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN  421 (636)
T ss_dssp             CCSSEEE-ECC-TTSEEECT---TCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred             CCCCccc-ccc-Hhhhhhcc---cCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence            6666665 222 23444444   1377777776643 3344444433  7788888888777766654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.73  E-value=1.6e-17  Score=167.63  Aligned_cols=134  Identities=21%  Similarity=0.311  Sum_probs=65.7

Q ss_pred             ccccceEEEeecccccc-cC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEE
Q 017975          160 EWEGVKRISLMENEIQS-LP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHL  237 (363)
Q Consensus       160 ~~~~l~~L~l~~~~~~~-l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L  237 (363)
                      .+++++.|++++|.+.. +| .+..+++|++|++++|.+....+..+..+++|++|++++|.....+|..++.+++|++|
T Consensus       416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  495 (768)
T 3rgz_A          416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI  495 (768)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence            33444455554444442 22 23444555555555555543333334555555555555553333455555555555555


Q ss_pred             EccCCCCC-ccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccC
Q 017975          238 DLSSTKVR-GLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGS  302 (363)
Q Consensus       238 ~l~~~~l~-~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~  302 (363)
                      ++++|.+. .+|..++.++ |+.|+++.|.+..         ..|..+..+++|+.|++.+|.+.+.
T Consensus       496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~---------~~p~~l~~l~~L~~L~Ls~N~l~g~  553 (768)
T 3rgz_A          496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG---------NIPAELGDCRSLIWLDLNTNLFNGT  553 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE---------ECCGGGGGCTTCCEEECCSSEEESB
T ss_pred             EccCCccCCcCChHHhcCCCCCEEECCCCcccC---------cCCHHHcCCCCCCEEECCCCccCCc
Confidence            55555554 3455555555 5555555555441         2334555555555555555555433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.72  E-value=4.5e-18  Score=152.89  Aligned_cols=180  Identities=17%  Similarity=0.215  Sum_probs=120.4

Q ss_pred             cccceEEEeecccccccCC-CCCCCCccEEEeccCCccccch-HHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEE
Q 017975          161 WEGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITE-SFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLD  238 (363)
Q Consensus       161 ~~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~  238 (363)
                      ++++++|++++|.+..++. +..+++|++|++++|.+..+++ ..+..+++|++|++++|......|..++.+++|++|+
T Consensus        77 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  156 (306)
T 2z66_A           77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  156 (306)
T ss_dssp             CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred             ccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence            4556666666665555542 4556666666666666666554 3366666666666666633334455566666677777


Q ss_pred             ccCCCCCc--cchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchh
Q 017975          239 LSSTKVRG--LPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQ  315 (363)
Q Consensus       239 l~~~~l~~--lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~  315 (363)
                      +++|.+..  +|..+..++ |+.|+++.|.++.++         |..+..+++|+.|++.+|.+.+..+ ..+..++++ 
T Consensus       157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---------~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L-  225 (306)
T 2z66_A          157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS---------PTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSL-  225 (306)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC---------TTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTC-
T ss_pred             CCCCccccccchhHHhhCcCCCEEECCCCCcCCcC---------HHHhcCCCCCCEEECCCCccCccCh-hhccCcccC-
Confidence            76666654  566666666 666666666665553         3667888999999999988876543 346666666 


Q ss_pred             hhhheeeecccCCCCcCCcccccc-cccceeeeccCCCCC
Q 017975          316 NITQALHIKDCNSLPLNLLHLANM-EHLQLFSIWDSNLED  354 (363)
Q Consensus       316 ~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~c~~l~  354 (363)
                         +.|++++|......+..+..+ ++|+.|++++|+...
T Consensus       226 ---~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          226 ---QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             ---CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             ---CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence               999999987655556677777 489999999998753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.72  E-value=1.2e-17  Score=164.21  Aligned_cols=200  Identities=18%  Similarity=0.150  Sum_probs=161.5

Q ss_pred             ceeEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCC
Q 017975          142 EKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH  219 (363)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~  219 (363)
                      ...+.+.+..++.+|... .+++++|++++|.++.++.  +.++++|++|++++|.++.+++..|.++++|++|++++| 
T Consensus        13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-   90 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-   90 (606)
T ss_dssp             TTEEECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-
T ss_pred             CCceEccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-
Confidence            345777888888887632 3789999999999998864  889999999999999999998877999999999999999 


Q ss_pred             Ccccc-CccccCCCCCCEEEccCCCCCccc-hhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEE
Q 017975          220 YLTEL-PVGISSLVSLHHLDLSSTKVRGLP-QELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIA  296 (363)
Q Consensus       220 ~~~~l-p~~i~~L~~L~~L~l~~~~l~~lP-~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~  296 (363)
                      .++.+ |..++++++|++|++++|.+..+| ..++.+. |+.|+++.|.+..+.        .|..++++++|+.|++.+
T Consensus        91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------lp~~~~~l~~L~~L~Ls~  162 (606)
T 3vq2_A           91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK--------LPAYFSNLTNLVHVDLSY  162 (606)
T ss_dssp             CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC--------CCGGGGTCTTCCEEECCS
T ss_pred             cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee--------chHhHhhcCCCCEEEccC
Confidence            56555 889999999999999999999987 6789999 999999999886422        347899999999999999


Q ss_pred             EEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975          297 LSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       297 ~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l  353 (363)
                      |.+.+..+ ..+..+.++...+.+|++++|.........+.. .+|+.|++++|...
T Consensus       163 n~l~~~~~-~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~  217 (606)
T 3vq2_A          163 NYIQTITV-NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNS  217 (606)
T ss_dssp             SCCCEECT-TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSC
T ss_pred             CcceecCh-hhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccc
Confidence            98876433 456666666554568999988753332333433 48999999998764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=2.2e-17  Score=166.98  Aligned_cols=209  Identities=17%  Similarity=0.191  Sum_probs=150.6

Q ss_pred             ceeEEecCCCCCCCcc---ccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCC-CCEEEccc
Q 017975          142 EKFLVRAGVGLTDAPK---IEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPS-LRVLNLSV  217 (363)
Q Consensus       142 ~~~~~~~~~~~~~~~~---~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~-L~~L~L~~  217 (363)
                      -..+...+..+..+|.   +..+++++.|++++|.+..+|.+..+++|+.|++++|.+..+|.. +.++++ |++|++++
T Consensus       550 L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~  628 (876)
T 4ecn_A          550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPED-FCAFTDQVEGLGFSH  628 (876)
T ss_dssp             CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTT-SCEECTTCCEEECCS
T ss_pred             ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHH-HhhccccCCEEECcC
Confidence            3456666666666665   677788888888888888888888888888888888888877666 777777 88888888


Q ss_pred             CCCccccCccccCCC-------------------------------CCCEEEccCCCCCccchhhh-ccc-hhccccCcC
Q 017975          218 NHYLTELPVGISSLV-------------------------------SLHHLDLSSTKVRGLPQELK-ALV-LRMLHCGSN  264 (363)
Q Consensus       218 ~~~~~~lp~~i~~L~-------------------------------~L~~L~l~~~~l~~lP~~i~-~L~-L~~L~~~~~  264 (363)
                      | .++.+|..++.+.                               +|++|++++|.+..+|..+. .+. |+.|+++.|
T Consensus       629 N-~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N  707 (876)
T 4ecn_A          629 N-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN  707 (876)
T ss_dssp             S-CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC
T ss_pred             C-CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC
Confidence            8 5667776544332                               56666666666666776654 566 888888888


Q ss_pred             ccCcCCCC-------------CCCCC--------Ccccchh--hhccccccceEEEEeccCcccccccCCCchhhhhhee
Q 017975          265 HWPIAEEG-------------NVLSD--------DAESLMK--EIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQAL  321 (363)
Q Consensus       265 ~l~~lp~~-------------~l~~l--------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L  321 (363)
                      .+..+|..             ++..+        .+|..+.  .+++|+.|++.+|.+.+ .| ..+..+++|    +.|
T Consensus       708 ~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp-~~l~~L~~L----~~L  781 (876)
T 4ecn_A          708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FP-TQPLNSSQL----KAF  781 (876)
T ss_dssp             CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CC-CGGGGCTTC----CEE
T ss_pred             cCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cc-hhhhcCCCC----CEE
Confidence            88877761             23222        4566665  78888888888888876 33 456666666    888


Q ss_pred             eecccC------CCCcCCcccccccccceeeeccCCCCCccccc
Q 017975          322 HIKDCN------SLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       322 ~l~~~~------~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  359 (363)
                      ++++|.      .....+..+.++++|+.|++++|.+ +.+|..
T Consensus       782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~  824 (876)
T 4ecn_A          782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK  824 (876)
T ss_dssp             ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred             ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence            887633      3444566788889999999999888 667664

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.72  E-value=8.2e-17  Score=147.20  Aligned_cols=124  Identities=23%  Similarity=0.374  Sum_probs=76.8

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~  222 (363)
                      ..+...+..+..++.+..++++++|++++|.++.++.+..+++|++|++++|.+..+++  +..+++|++|++++|....
T Consensus        69 ~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~  146 (347)
T 4fmz_A           69 EYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS  146 (347)
T ss_dssp             CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCC
T ss_pred             cEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcc
Confidence            34445555555555566666677777777666666666666777777777776666655  5666666666666664444


Q ss_pred             ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCC
Q 017975          223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAE  270 (363)
Q Consensus       223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp  270 (363)
                      .++ .++.+++|++|++++|.+..++. +..++ |+.|+++.|.+..++
T Consensus       147 ~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~  193 (347)
T 4fmz_A          147 DLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS  193 (347)
T ss_dssp             CCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG
T ss_pred             ccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc
Confidence            433 46666666666666666666554 55555 666666666665554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.72  E-value=2.4e-17  Score=162.01  Aligned_cols=203  Identities=20%  Similarity=0.203  Sum_probs=112.8

Q ss_pred             EEecCCCCCCCccccccccceEEEeecccccccCCC---------------------CCCCCccEEEeccCCccccc--h
Q 017975          145 LVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQI---------------------PTCPRLQTLLLEYNHIEEIT--E  201 (363)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~---------------------~~l~~L~~L~l~~~~l~~~~--~  201 (363)
                      +...+..+..++.+..+++++.|++.+|.+..+|.+                     ..+++|++|++++|.++...  +
T Consensus       290 L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~  369 (606)
T 3vq2_A          290 MSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCS  369 (606)
T ss_dssp             EEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECC
T ss_pred             EEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchh
Confidence            344444445555555556666666666666555533                     34455555555555555442  2


Q ss_pred             HHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccch--hhhccc-hhccccCcCccCcCCC---CCCC
Q 017975          202 SFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQ--ELKALV-LRMLHCGSNHWPIAEE---GNVL  275 (363)
Q Consensus       202 ~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~--~i~~L~-L~~L~~~~~~l~~lp~---~~l~  275 (363)
                      ..+..+++|++|++++| .+..+|..++.+++|++|++++|.+..++.  .+..++ |+.|+++.|.+...+.   .++.
T Consensus       370 ~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  448 (606)
T 3vq2_A          370 YSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT  448 (606)
T ss_dssp             HHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred             hhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence            33666667777777766 466666667777777777777776665532  556666 6676666666655332   1111


Q ss_pred             CC-------------CcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCccccccccc
Q 017975          276 SD-------------DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHL  342 (363)
Q Consensus       276 ~l-------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L  342 (363)
                      ++             ..|..+..+++|+.|++.+|.+.+..+ ..+..++++    ++|++++|......+..+.++++|
T Consensus       449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L----~~L~Ls~N~l~~~~~~~~~~l~~L  523 (606)
T 3vq2_A          449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-GVFDTLHRL----QLLNMSHNNLLFLDSSHYNQLYSL  523 (606)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTC----CEEECCSSCCSCEEGGGTTTCTTC
T ss_pred             CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh-hhhcccccC----CEEECCCCcCCCcCHHHccCCCcC
Confidence            11             123445555555555555555443322 334444444    666666655433334456666666


Q ss_pred             ceeeeccCCCC
Q 017975          343 QLFSIWDSNLE  353 (363)
Q Consensus       343 ~~L~l~~c~~l  353 (363)
                      +.|++++|++.
T Consensus       524 ~~L~l~~N~l~  534 (606)
T 3vq2_A          524 STLDCSFNRIE  534 (606)
T ss_dssp             CEEECTTSCCC
T ss_pred             CEEECCCCcCc
Confidence            66666666644

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=1.4e-17  Score=162.67  Aligned_cols=178  Identities=22%  Similarity=0.302  Sum_probs=125.1

Q ss_pred             CCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCC
Q 017975          153 TDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLV  232 (363)
Q Consensus       153 ~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~  232 (363)
                      ..+.....+++++.|++.+|.+..++.+..+++|+.|++++|.+..+++  +..+++|++|+|++| .+..+| .++.++
T Consensus        34 ~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~  109 (605)
T 1m9s_A           34 TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLK  109 (605)
T ss_dssp             TSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCT
T ss_pred             ccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCC
Confidence            3334455667777778877777777777777888888888887777766  677788888888887 566665 677778


Q ss_pred             CCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCC
Q 017975          233 SLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKF  311 (363)
Q Consensus       233 ~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l  311 (363)
                      +|++|+|++|.+..+| .+..+. |+.|+++.|.+..++           .+..+++|+.|++.+|.+.+..+   +..+
T Consensus       110 ~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-----------~l~~l~~L~~L~Ls~N~l~~~~~---l~~l  174 (605)
T 1m9s_A          110 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-----------VLSRLTKLDTLSLEDNQISDIVP---LAGL  174 (605)
T ss_dssp             TCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCCG-----------GGGSCTTCSEEECCSSCCCCCGG---GTTC
T ss_pred             CCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCch-----------hhcccCCCCEEECcCCcCCCchh---hccC
Confidence            8888888888777764 466666 777777777766543           46667777777777777665443   5555


Q ss_pred             CchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCc
Q 017975          312 PKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDW  355 (363)
Q Consensus       312 ~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~  355 (363)
                      ++|    +.|+|++|... . ++.+..+++|+.|+|++|++...
T Consensus       175 ~~L----~~L~Ls~N~i~-~-l~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          175 TKL----QNLYLSKNHIS-D-LRALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             TTC----CEEECCSSCCC-B-CGGGTTCTTCSEEECCSEEEECC
T ss_pred             CCC----CEEECcCCCCC-C-ChHHccCCCCCEEEccCCcCcCC
Confidence            555    77777776532 2 24577777788888877776543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.71  E-value=3.3e-17  Score=155.42  Aligned_cols=37  Identities=30%  Similarity=0.442  Sum_probs=14.5

Q ss_pred             CCCCccEEEeccCCccccchHHhcCCCCCCEEEcccC
Q 017975          182 TCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN  218 (363)
Q Consensus       182 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~  218 (363)
                      .+++|++|++++|.+..+++..++++++|++|++++|
T Consensus        77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  113 (455)
T 3v47_A           77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC  113 (455)
T ss_dssp             TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS
T ss_pred             ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC
Confidence            3344444444444433333322334444444444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.71  E-value=1.2e-16  Score=146.02  Aligned_cols=199  Identities=20%  Similarity=0.273  Sum_probs=146.9

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~  222 (363)
                      ..+...+..+..++.+..++++++|++++|.++.++.+..+++|++|++++|.++.++.  +.++++|++|++++| .+.
T Consensus        47 ~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~  123 (347)
T 4fmz_A           47 TKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NIS  123 (347)
T ss_dssp             SEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCC
T ss_pred             cEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-ccc
Confidence            45666777777778888889999999999999988888999999999999999888753  889999999999999 677


Q ss_pred             ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCC----CCCCCC-------Ccccchhhhcccc
Q 017975          223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEE----GNVLSD-------DAESLMKEIHCLE  290 (363)
Q Consensus       223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~----~~l~~l-------~~~~~l~~l~~L~  290 (363)
                      .+|. +..+++|++|++++|.....+..+..+. |+.|+++.+.+..++.    .++..+       .....+..+++|+
T Consensus       124 ~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~  202 (347)
T 4fmz_A          124 DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLH  202 (347)
T ss_dssp             CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCC
T ss_pred             Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccc
Confidence            7775 8999999999999995544445588888 9999999888877764    222222       1111255566666


Q ss_pred             ccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975          291 QLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED  354 (363)
Q Consensus       291 ~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~  354 (363)
                      .|++.+|.+.+..+   +..++++    ++|++++|.....  ..+..+++|+.|++++|....
T Consensus       203 ~L~l~~n~l~~~~~---~~~~~~L----~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~  257 (347)
T 4fmz_A          203 YFTAYVNQITDITP---VANMTRL----NSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISD  257 (347)
T ss_dssp             EEECCSSCCCCCGG---GGGCTTC----CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred             eeecccCCCCCCch---hhcCCcC----CEEEccCCccCCC--cchhcCCCCCEEECCCCccCC
Confidence            66666655544322   4444554    8888888764322  227788888999998887655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.71  E-value=1.1e-16  Score=154.54  Aligned_cols=121  Identities=26%  Similarity=0.354  Sum_probs=96.7

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      +.+...+..++.+|.... +++++|++++|.++.++  .+..+++|++|++++|.++.+++..|+++++|++|++++| .
T Consensus         3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~   80 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-K   80 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-C
T ss_pred             ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-c
Confidence            456667777777765333 78899999999888875  4788889999999999888887766888999999999998 6


Q ss_pred             ccccCccccCCCCCCEEEccCCCCCc--cchhhhccc-hhccccCcCccC
Q 017975          221 LTELPVGISSLVSLHHLDLSSTKVRG--LPQELKALV-LRMLHCGSNHWP  267 (363)
Q Consensus       221 ~~~lp~~i~~L~~L~~L~l~~~~l~~--lP~~i~~L~-L~~L~~~~~~l~  267 (363)
                      ++.+|..  .+++|++|++++|.++.  +|..++.++ |+.|+++.|.+.
T Consensus        81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence            7788866  78889999999988876  567888888 888877777664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.71  E-value=6.3e-17  Score=154.49  Aligned_cols=197  Identities=16%  Similarity=0.207  Sum_probs=122.3

Q ss_pred             cccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCC
Q 017975          157 KIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSL  234 (363)
Q Consensus       157 ~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L  234 (363)
                      .+..+++++.|++++|.++.+|.  +..+++|++|++++|.+..+++..+.++++|++|++++|......|..++.+++|
T Consensus        75 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  154 (477)
T 2id5_A           75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL  154 (477)
T ss_dssp             TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred             hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence            34556677777777777777663  5677777777777777777666667777777777777773333345567777777


Q ss_pred             CEEEccCCCCCccch-hhhccc-hhccccCcCccCcCCC---CCCCCC--------------------------------
Q 017975          235 HHLDLSSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIAEE---GNVLSD--------------------------------  277 (363)
Q Consensus       235 ~~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l--------------------------------  277 (363)
                      ++|++++|.++.+|. .+..+. |+.|+++.|.+..++.   .++.++                                
T Consensus       155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  234 (477)
T 2id5_A          155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC  234 (477)
T ss_dssp             CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred             CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence            777777777777764 356666 7777777766665553   111111                                


Q ss_pred             ---Ccc-cchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975          278 ---DAE-SLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       278 ---~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l  353 (363)
                         ..| ..+..+++|+.|++.+|.+.+.. ...+..++++    +.|++++|......+..+..+++|+.|++++|.+.
T Consensus       235 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  309 (477)
T 2id5_A          235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIE-GSMLHELLRL----QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT  309 (477)
T ss_dssp             CCCSCCHHHHTTCTTCCEEECCSSCCCEEC-TTSCTTCTTC----CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred             cccccCHHHhcCccccCeeECCCCcCCccC-hhhccccccC----CEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence               111 13444555555555555544322 2334444444    67777766544444556777788888888888766


Q ss_pred             Ccccc
Q 017975          354 DWNVD  358 (363)
Q Consensus       354 ~~~~~  358 (363)
                      ...++
T Consensus       310 ~~~~~  314 (477)
T 2id5_A          310 TLEES  314 (477)
T ss_dssp             CCCGG
T ss_pred             eeCHh
Confidence            55443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.70  E-value=3.5e-17  Score=152.19  Aligned_cols=112  Identities=21%  Similarity=0.282  Sum_probs=100.1

Q ss_pred             cccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCC
Q 017975          159 EEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLH  235 (363)
Q Consensus       159 ~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~  235 (363)
                      ..+++++++++.++.++.+|.  +..+++|++|++++|.+..+++..+..+++|++|++++| .++.+ |..++.+++|+
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence            356899999999999999987  678999999999999999998877999999999999999 56655 55689999999


Q ss_pred             EEEccCCCCCccchhh-hccc-hhccccCcCccCcCCC
Q 017975          236 HLDLSSTKVRGLPQEL-KALV-LRMLHCGSNHWPIAEE  271 (363)
Q Consensus       236 ~L~l~~~~l~~lP~~i-~~L~-L~~L~~~~~~l~~lp~  271 (363)
                      +|++++|.++.+|..+ ..++ |+.|+++.|.+..++.
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~  158 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED  158 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh
Confidence            9999999999999875 7888 9999999999988765

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.70  E-value=8.2e-18  Score=178.23  Aligned_cols=131  Identities=17%  Similarity=0.243  Sum_probs=110.5

Q ss_pred             CccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhcccccc-----ccchHHHHHHHHhhcCCCCChhhhHHHhHhcCC
Q 017975            1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKF-----EDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLF   75 (363)
Q Consensus         1 Iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~-----~~~~~~i~~~L~~sy~~L~~~~lk~cfl~~s~F   75 (363)
                      |+++|+|+||||+++|++|+.+.  ..|+..++.+....+..     ....+.+..++.+||+.||+ ++|.||+|||+|
T Consensus       313 i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f  389 (1249)
T 3sfz_A          313 IIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSIL  389 (1249)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGS
T ss_pred             HHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCcc
Confidence            57899999999999999999843  57999999987655431     11124799999999999999 899999999999


Q ss_pred             CCCcccChHHHHHHHHHhCCccCcCHHHHHHHHHHhhcccCC-C---CceeechhHHHHHHHHhhhh
Q 017975           76 PEDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEG-G---DHVKMHDMIRDMALWIANEI  138 (363)
Q Consensus        76 p~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~L~~rsli~~~-~---~~~~mhdl~~~~~~~i~~~~  138 (363)
                      |+++.|+++.++.+|.+++.    .++.++++|+++||++.. .   ..|+|||++|++++....++
T Consensus       390 ~~~~~i~~~~~~~~~~~~~~----~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          390 QKDVKVPTKVLCVLWDLETE----EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             CTTCCEEHHHHHHHHTCCHH----HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             CCCCeeCHHHHHHHhCCCHH----HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            99999999999999976642    288999999999999982 2   25999999999999886654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.70  E-value=2.4e-17  Score=162.82  Aligned_cols=209  Identities=16%  Similarity=0.170  Sum_probs=129.4

Q ss_pred             eeEEecCCCCCCCcc---ccccccceEEEeeccccc-ccCCCCCCCCccEEEeccCCccccchHHhcCCCC-CCEEEccc
Q 017975          143 KFLVRAGVGLTDAPK---IEEWEGVKRISLMENEIQ-SLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPS-LRVLNLSV  217 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~---~~~~~~l~~L~l~~~~~~-~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~-L~~L~L~~  217 (363)
                      ..+...+..++.+|.   +..+++++.|++++|.+. .+|.+..+++|++|++++|.+..+|.. +.++++ |++|++++
T Consensus       308 ~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~  386 (636)
T 4eco_A          308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAH  386 (636)
T ss_dssp             CEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCS
T ss_pred             CEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHh-hhhhcccCcEEEccC
Confidence            345555555555554   555666666666666666 555545555555555555555544444 444444 55555554


Q ss_pred             C-------------------------CCccccCcccc-------CCCCCCEEEccCCCCCccchhhhc-cc-hhccccCc
Q 017975          218 N-------------------------HYLTELPVGIS-------SLVSLHHLDLSSTKVRGLPQELKA-LV-LRMLHCGS  263 (363)
Q Consensus       218 ~-------------------------~~~~~lp~~i~-------~L~~L~~L~l~~~~l~~lP~~i~~-L~-L~~L~~~~  263 (363)
                      |                         ......|..++       .+.+|++|++++|.++.+|..+.. ++ |+.|+++.
T Consensus       387 N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~  466 (636)
T 4eco_A          387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG  466 (636)
T ss_dssp             SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred             CcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence            4                         33333444444       555677777777777777766543 56 77777888


Q ss_pred             CccCcCCCC-------------CCCCC--------Ccccchh--hhccccccceEEEEeccCcccccccCCCchhhhhhe
Q 017975          264 NHWPIAEEG-------------NVLSD--------DAESLMK--EIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQA  320 (363)
Q Consensus       264 ~~l~~lp~~-------------~l~~l--------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~  320 (363)
                      |.++.+|..             ++..+        .+|..+.  .+++|+.|++.+|.+.+ .| ..+..++++    +.
T Consensus       467 N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip-~~~~~l~~L----~~  540 (636)
T 4eco_A          467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FP-TQPLNSSTL----KG  540 (636)
T ss_dssp             SCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CC-CGGGGCSSC----CE
T ss_pred             CCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cC-hhhhcCCCC----CE
Confidence            887777751             33332        4556665  78888888888888776 33 456666666    88


Q ss_pred             eeeccc------CCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975          321 LHIKDC------NSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       321 L~l~~~------~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  359 (363)
                      |++++|      ......+..+.++++|+.|++++|.+ +.+|..
T Consensus       541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~  584 (636)
T 4eco_A          541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK  584 (636)
T ss_dssp             EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred             EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence            888543      33444566788888888888888888 666654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.70  E-value=8.5e-17  Score=152.56  Aligned_cols=127  Identities=25%  Similarity=0.284  Sum_probs=103.5

Q ss_pred             ceeEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCcc-ccchHHhcCCCCCCEEEcccC
Q 017975          142 EKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIE-EITESFFQSLPSLRVLNLSVN  218 (363)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~L~~~  218 (363)
                      ...+.+.+.+++.+|.  -.+++++|++++|.++.++  .+..+++|++|++++|.+. .+++..|.++++|++|++++|
T Consensus        12 ~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           12 GYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             TTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             ccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            3456677778888887  3378999999999999873  4789999999999999886 666767999999999999999


Q ss_pred             CCccccCccccCCCCCCEEEccCCCCCc-cchh--hhccc-hhccccCcCccCcCC
Q 017975          219 HYLTELPVGISSLVSLHHLDLSSTKVRG-LPQE--LKALV-LRMLHCGSNHWPIAE  270 (363)
Q Consensus       219 ~~~~~lp~~i~~L~~L~~L~l~~~~l~~-lP~~--i~~L~-L~~L~~~~~~l~~lp  270 (363)
                      ......|..++++++|++|++++|.++. +|..  +..++ |+.|+++.|.+..++
T Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  145 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ  145 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC
T ss_pred             ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccC
Confidence            5444458889999999999999998886 4444  77777 888888888877663

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.70  E-value=2.7e-17  Score=142.47  Aligned_cols=190  Identities=15%  Similarity=0.186  Sum_probs=151.4

Q ss_pred             eeEEecCCCCCCCcc--ccccccceEEEeeccc-ccccC--CCCCCCCccEEEecc-CCccccchHHhcCCCCCCEEEcc
Q 017975          143 KFLVRAGVGLTDAPK--IEEWEGVKRISLMENE-IQSLP--QIPTCPRLQTLLLEY-NHIEEITESFFQSLPSLRVLNLS  216 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~-~~~l~--~~~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~L~  216 (363)
                      ..+...+..++.++.  +..+++++.|++++|. ++.++  .+..+++|++|++++ |.++.+++..|.++++|++|+++
T Consensus        34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~  113 (239)
T 2xwt_C           34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF  113 (239)
T ss_dssp             CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE
T ss_pred             cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC
Confidence            355556666666553  6678999999999997 88887  477999999999999 99999998779999999999999


Q ss_pred             cCCCccccCccccCCCCCC---EEEccCC-CCCccchh-hhccc-hh-ccccCcCccCcCCCCCCCCCCcccchhhhccc
Q 017975          217 VNHYLTELPVGISSLVSLH---HLDLSST-KVRGLPQE-LKALV-LR-MLHCGSNHWPIAEEGNVLSDDAESLMKEIHCL  289 (363)
Q Consensus       217 ~~~~~~~lp~~i~~L~~L~---~L~l~~~-~l~~lP~~-i~~L~-L~-~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L  289 (363)
                      +| .++.+|. ++.+++|+   +|++++| .++.+|.. +..+. |+ .|+++.|.++.+|.          .....++|
T Consensus       114 ~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~----------~~~~~~~L  181 (239)
T 2xwt_C          114 NT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG----------YAFNGTKL  181 (239)
T ss_dssp             EE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT----------TTTTTCEE
T ss_pred             CC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH----------hhcCCCCC
Confidence            99 7888996 99999998   9999999 99999864 78888 99 99999999988873          22233789


Q ss_pred             cccceEEEE-eccCcccccccCC-CchhhhhheeeecccCCCCcCCcccccccccceeeeccCCC
Q 017975          290 EQLNLIALS-LRGSRGVENFLKF-PKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNL  352 (363)
Q Consensus       290 ~~L~l~~~~-~~~~~~~~~l~~l-~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~  352 (363)
                      +.|++.+|. +.. .+...+..+ +++    +.|++++|.-... +..  .+++|+.|++++|..
T Consensus       182 ~~L~L~~n~~l~~-i~~~~~~~l~~~L----~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          182 DAVYLNKNKYLTV-IDKDAFGGVYSGP----SLLDVSQTSVTAL-PSK--GLEHLKELIARNTWT  238 (239)
T ss_dssp             EEEECTTCTTCCE-ECTTTTTTCSBCC----SEEECTTCCCCCC-CCT--TCTTCSEEECTTC--
T ss_pred             CEEEcCCCCCccc-CCHHHhhccccCC----cEEECCCCccccC-Chh--HhccCceeeccCccC
Confidence            999999884 653 333556666 666    9999999764322 222  678999999998864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.70  E-value=8.2e-17  Score=158.23  Aligned_cols=212  Identities=21%  Similarity=0.250  Sum_probs=157.5

Q ss_pred             eEEecCCCCCCCcc--ccccccceEEEeecccccccC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975          144 FLVRAGVGLTDAPK--IEEWEGVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       144 ~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      .+...+..+..++.  +..+++++.|++++|.++.+| .+..+++|++|++++|.+..+++..+.++++|++|++++|..
T Consensus       258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  337 (606)
T 3t6q_A          258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK  337 (606)
T ss_dssp             EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred             EEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence            34445555555543  567789999999999998887 478889999999999999888776688999999999999955


Q ss_pred             ccccCcc-ccCCCCCCEEEccCCCCCcc---chhhhccc-hhccccCcCccCcCCC---CCCCCC------------C-c
Q 017975          221 LTELPVG-ISSLVSLHHLDLSSTKVRGL---PQELKALV-LRMLHCGSNHWPIAEE---GNVLSD------------D-A  279 (363)
Q Consensus       221 ~~~lp~~-i~~L~~L~~L~l~~~~l~~l---P~~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l------------~-~  279 (363)
                      ...+|.. ++.+++|++|++++|.+..+   |..+..++ |+.|+++.|.+..++.   .++.++            . .
T Consensus       338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  417 (606)
T 3t6q_A          338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA  417 (606)
T ss_dssp             CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred             ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence            5566654 88899999999999988876   56788888 9999998888776654   222222            1 2


Q ss_pred             ccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCC---cCCcccccccccceeeeccCCCCCcc
Q 017975          280 ESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLP---LNLLHLANMEHLQLFSIWDSNLEDWN  356 (363)
Q Consensus       280 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~l~~c~~l~~~  356 (363)
                      +..+..+++|+.|++.+|.+.+..+ ..+..++++    ++|++++|....   ..+..+..+++|+.|++++|.+.+..
T Consensus       418 ~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  492 (606)
T 3t6q_A          418 QSPFQNLHLLKVLNLSHSLLDISSE-QLFDGLPAL----QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID  492 (606)
T ss_dssp             CCTTTTCTTCCEEECTTCCCBTTCT-TTTTTCTTC----CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred             chhhhCcccCCEEECCCCccCCcCH-HHHhCCCCC----CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence            2336778888888888887765443 456666666    889998887422   22356888899999999999888776


Q ss_pred             cccc
Q 017975          357 VDCA  360 (363)
Q Consensus       357 ~~~~  360 (363)
                      |+..
T Consensus       493 ~~~~  496 (606)
T 3t6q_A          493 QHAF  496 (606)
T ss_dssp             TTTT
T ss_pred             hhhh
Confidence            6543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.70  E-value=2.1e-16  Score=153.94  Aligned_cols=123  Identities=29%  Similarity=0.341  Sum_probs=106.3

Q ss_pred             ceeEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCC
Q 017975          142 EKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH  219 (363)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~  219 (363)
                      ...+.+.+..++.+|... .+++++|++++|.++.++  .+..+++|++|++++|.++.+++..|.++++|++|++++| 
T Consensus        33 ~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-  110 (562)
T 3a79_B           33 ESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-  110 (562)
T ss_dssp             CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred             CcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-
Confidence            367778888888877532 378999999999999886  5889999999999999999998877999999999999999 


Q ss_pred             CccccCccccCCCCCCEEEccCCCCCccc--hhhhccc-hhccccCcCccCc
Q 017975          220 YLTELPVGISSLVSLHHLDLSSTKVRGLP--QELKALV-LRMLHCGSNHWPI  268 (363)
Q Consensus       220 ~~~~lp~~i~~L~~L~~L~l~~~~l~~lP--~~i~~L~-L~~L~~~~~~l~~  268 (363)
                      .++.+|..  .+++|++|++++|.+..+|  ..++.++ |+.|+++.|.++.
T Consensus       111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            78899977  8999999999999998864  7889988 9999888888764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.69  E-value=4e-17  Score=158.49  Aligned_cols=194  Identities=24%  Similarity=0.305  Sum_probs=139.4

Q ss_pred             EEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975          145 LVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~  222 (363)
                      ....+..++.+|... .+++++|++++|.++.++  .+..+++|++|++++|.++.+++..|.++++|++|++++| .++
T Consensus        10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~   87 (549)
T 2z81_A           10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLS   87 (549)
T ss_dssp             EECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCC
T ss_pred             EECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccC
Confidence            444556667776532 378999999999998874  4789999999999999999988877999999999999999 566


Q ss_pred             ccCcc-ccCCCCCCEEEccCCCCCc--cchhhhccc-hhccccCcCc-cCcCCCCCCCCCCcccchhhhccccccceEEE
Q 017975          223 ELPVG-ISSLVSLHHLDLSSTKVRG--LPQELKALV-LRMLHCGSNH-WPIAEEGNVLSDDAESLMKEIHCLEQLNLIAL  297 (363)
Q Consensus       223 ~lp~~-i~~L~~L~~L~l~~~~l~~--lP~~i~~L~-L~~L~~~~~~-l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~  297 (363)
                      .+|.. ++++++|++|++++|.++.  .|..++.++ |+.|+++.|. +..+|.         ..+..+++|+.|++.+|
T Consensus        88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~---------~~~~~l~~L~~L~L~~n  158 (549)
T 2z81_A           88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR---------IDFAGLTSLNELEIKAL  158 (549)
T ss_dssp             SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT---------TTTTTCCEEEEEEEEET
T ss_pred             ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH---------hhhhcccccCeeeccCC
Confidence            66654 9999999999999999985  467888888 9999998887 566652         45667777888887777


Q ss_pred             EeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975          298 SLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED  354 (363)
Q Consensus       298 ~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~  354 (363)
                      .+.+..+ ..+..++++    +.|++++|.........+..+++|+.|++++|...+
T Consensus       159 ~l~~~~~-~~l~~l~~L----~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          159 SLRNYQS-QSLKSIRDI----HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             TCCEECT-TTTTTCSEE----EEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             cccccCh-hhhhccccC----ceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence            7665433 445555554    666666554321111112345566666666665544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.69  E-value=1.7e-16  Score=161.77  Aligned_cols=204  Identities=15%  Similarity=0.161  Sum_probs=160.0

Q ss_pred             ceeEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccC-CccccchHHhcCCCCCCEEEcccC
Q 017975          142 EKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYN-HIEEITESFFQSLPSLRVLNLSVN  218 (363)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~~  218 (363)
                      ...+.+.+..++.+|.  -.+++++|++++|.++.++  .+.++++|++|++++| .+..+++..|+++++|++|+|++|
T Consensus         6 ~~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            6 GRIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             TEEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             ceEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            4567788888898887  5589999999999998874  5889999999999999 455676777999999999999999


Q ss_pred             CCccccCccccCCCCCCEEEccCCCCCc-cchh--hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccce
Q 017975          219 HYLTELPVGISSLVSLHHLDLSSTKVRG-LPQE--LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNL  294 (363)
Q Consensus       219 ~~~~~lp~~i~~L~~L~~L~l~~~~l~~-lP~~--i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l  294 (363)
                      ......|..++++++|++|++++|.+.. +|..  +..++ |+.|+++.|.+..++        .+..++++++|+.|++
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~--------~~~~~~~L~~L~~L~L  155 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY--------LHPSFGKLNSLKSIDF  155 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC--------CCGGGGTCSSCCEEEE
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc--------cchhHhhCCCCCEEEC
Confidence            4444458999999999999999999986 5665  88898 999999999987664        2357889999999999


Q ss_pred             EEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCccccccc------ccceeeeccCCCCCcccc
Q 017975          295 IALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANME------HLQLFSIWDSNLEDWNVD  358 (363)
Q Consensus       295 ~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~------~L~~L~l~~c~~l~~~~~  358 (363)
                      .+|.+.+..+ ..+..+..  ..|+.|++++|......+..+..+.      +|+.|++++|......|.
T Consensus       156 s~N~i~~~~~-~~l~~l~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  222 (844)
T 3j0a_A          156 SSNQIFLVCE-HELEPLQG--KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG  222 (844)
T ss_dssp             ESSCCCCCCS-GGGHHHHH--CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS
T ss_pred             CCCcCCeeCH-HHcccccC--CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH
Confidence            9988876544 34444411  2349999999875444344444444      399999999977655554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.69  E-value=2.2e-16  Score=150.35  Aligned_cols=126  Identities=21%  Similarity=0.331  Sum_probs=53.7

Q ss_pred             ccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 017975          160 EWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDL  239 (363)
Q Consensus       160 ~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l  239 (363)
                      .++++++|++++|.+..++.+..+++|+.|++++|.+..++.  +..+++|++|++++| .+..++. ++.+++|++|++
T Consensus       197 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l  272 (466)
T 1o6v_A          197 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKL  272 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEEC
T ss_pred             cCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchh--hhcCCCCCEEECCCC-ccccchh-hhcCCCCCEEEC
Confidence            333444444444433333333334444444444444433321  344444444444444 3333332 444444444444


Q ss_pred             cCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975          240 SSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG  301 (363)
Q Consensus       240 ~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~  301 (363)
                      ++|.+..+|. +..++ |+.|+++.|.++.++.           +..+++|+.|++.+|.+.+
T Consensus       273 ~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-----------~~~l~~L~~L~L~~n~l~~  323 (466)
T 1o6v_A          273 GANQISNISP-LAGLTALTNLELNENQLEDISP-----------ISNLKNLTYLTLYFNNISD  323 (466)
T ss_dssp             CSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-----------GGGCTTCSEEECCSSCCSC
T ss_pred             CCCccCcccc-ccCCCccCeEEcCCCcccCchh-----------hcCCCCCCEEECcCCcCCC
Confidence            4444444433 33333 4444444444444331           4445555555555554443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.69  E-value=1.8e-16  Score=138.37  Aligned_cols=178  Identities=21%  Similarity=0.297  Sum_probs=146.8

Q ss_pred             ccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEcc
Q 017975          162 EGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLS  240 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~  240 (363)
                      ...+.++++++.++.+|.... ++++.|++++|.+..+++..+.++++|++|++++| .++.+ |..+..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence            456789999999998885322 68999999999999998877999999999999999 55554 4558999999999999


Q ss_pred             CCCCCccch-hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhh
Q 017975          241 STKVRGLPQ-ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNIT  318 (363)
Q Consensus       241 ~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L  318 (363)
                      +|.++.+|. .+..+. |+.|+++.|.++.+|.         ..+..+++|+.|++.+|.+.+..+ ..+..++++    
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L----  157 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS---------GVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNL----  157 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC----
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcCh---------hHhccCCcccEEECcCCcCCccCH-HHcCcCcCC----
Confidence            999999875 457788 9999999999988873         456788999999999998875443 556777776    


Q ss_pred             heeeecccCCCCcCCcccccccccceeeeccCCCCCc
Q 017975          319 QALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDW  355 (363)
Q Consensus       319 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~  355 (363)
                      +.|++++|......+..+..+++|+.|++++|+....
T Consensus       158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            9999999876555455788999999999999997654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.69  E-value=1.3e-16  Score=146.30  Aligned_cols=179  Identities=22%  Similarity=0.214  Sum_probs=148.2

Q ss_pred             ccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEcc
Q 017975          162 EGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLS  240 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~  240 (363)
                      +.....+.+++.++.+|.- -.++|++|++++|.++.+++..+.++++|++|++++| .++.+ |..++++++|++|+++
T Consensus        31 ~~~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           31 DRNGICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             CTTSEEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCeEeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECC
Confidence            4444578888999998862 2368999999999999999877999999999999999 56665 5679999999999999


Q ss_pred             CCCCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhh
Q 017975          241 STKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNIT  318 (363)
Q Consensus       241 ~~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L  318 (363)
                      +|.++.+|.. +..++ |+.|+++.|.++.+|.        ...+..+++|+.|++.+|......+...+..++++    
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L----  176 (353)
T 2z80_A          109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE--------TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL----  176 (353)
T ss_dssp             SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS--------SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE----
T ss_pred             CCcCCcCCHhHhCCCccCCEEECCCCCCcccCc--------hhhhccCCCCcEEECCCCccccccCHHHccCCCCC----
Confidence            9999999886 78888 9999999999988871        12577899999999999854444444667777777    


Q ss_pred             heeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975          319 QALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED  354 (363)
Q Consensus       319 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~  354 (363)
                      ++|++++|......+..+..+++|+.|++++|....
T Consensus       177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred             CEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence            999999988655556789999999999999998643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.68  E-value=7.2e-17  Score=158.36  Aligned_cols=111  Identities=21%  Similarity=0.292  Sum_probs=99.1

Q ss_pred             ccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCCE
Q 017975          160 EWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHH  236 (363)
Q Consensus       160 ~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~  236 (363)
                      .+.+++.+++.++.+..+|.  +..+++|++|++++|.+..+++..|+.+++|++|+|++| .++.+| ..++.+++|++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCE
Confidence            45789999999999999986  678999999999999999998877999999999999999 566655 45799999999


Q ss_pred             EEccCCCCCccchhh-hccc-hhccccCcCccCcCCC
Q 017975          237 LDLSSTKVRGLPQEL-KALV-LRMLHCGSNHWPIAEE  271 (363)
Q Consensus       237 L~l~~~~l~~lP~~i-~~L~-L~~L~~~~~~l~~lp~  271 (363)
                      |++++|.+..+|..+ +.+. |+.|+++.|.+..+++
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  164 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED  164 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence            999999999999875 7888 9999999999988875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.68  E-value=1.5e-16  Score=158.45  Aligned_cols=212  Identities=19%  Similarity=0.205  Sum_probs=133.5

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL  221 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~  221 (363)
                      .+.+.+..++.+|... .+++++|++++|.++.++.  +..+++|++|++++|.+..+++..++++++|++|++++| .+
T Consensus         8 ~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l   85 (680)
T 1ziw_A            8 VADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-EL   85 (680)
T ss_dssp             EEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CC
T ss_pred             eeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-cc
Confidence            4556666666666422 2678888888888777663  677788888888888877777766778888888888887 66


Q ss_pred             cccCc-cccCCCCCCEEEccCCCCCccc-hhhhccc-hhccccCcCccCcCCC---CCCCCC------------Ccccch
Q 017975          222 TELPV-GISSLVSLHHLDLSSTKVRGLP-QELKALV-LRMLHCGSNHWPIAEE---GNVLSD------------DAESLM  283 (363)
Q Consensus       222 ~~lp~-~i~~L~~L~~L~l~~~~l~~lP-~~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l------------~~~~~l  283 (363)
                      +.+|. .++++++|++|++++|.+..+| ..++.++ |+.|+++.|.+...+.   .++.++            ..+..+
T Consensus        86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  165 (680)
T 1ziw_A           86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL  165 (680)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred             CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHh
Confidence            66665 4778888888888888777775 4577777 7777777777766543   222222            111112


Q ss_pred             h--hhccccccceEEEEeccCcccccccCCCch-----------------------------------------------
Q 017975          284 K--EIHCLEQLNLIALSLRGSRGVENFLKFPKL-----------------------------------------------  314 (363)
Q Consensus       284 ~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l-----------------------------------------------  314 (363)
                      .  .+++|+.|++.+|.+.+..+ ..+..+.++                                               
T Consensus       166 ~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~  244 (680)
T 1ziw_A          166 DIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG  244 (680)
T ss_dssp             GGGTTCEESEEECTTCCCCCBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred             hccccccccEEECCCCcccccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence            1  33567777776665544322 222221111                                               


Q ss_pred             -h-hhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975          315 -Q-NITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD  358 (363)
Q Consensus       315 -~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~  358 (363)
                       . ..|+.|++++|......+..+..+++|++|++++|...+..|.
T Consensus       245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  290 (680)
T 1ziw_A          245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH  290 (680)
T ss_dssp             GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT
T ss_pred             cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh
Confidence             1 1146666666654333344567777777777777776665554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.68  E-value=1.8e-16  Score=156.23  Aligned_cols=126  Identities=25%  Similarity=0.275  Sum_probs=88.5

Q ss_pred             eeEEecCCCCCCCc--cccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccC
Q 017975          143 KFLVRAGVGLTDAP--KIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN  218 (363)
Q Consensus       143 ~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~  218 (363)
                      ..+...++.++.++  .+..++++++|++++|.++.++.  +.++++|++|++++|.++.+++..|.++++|++|++++|
T Consensus        55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N  134 (635)
T 4g8a_A           55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET  134 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred             CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence            34555555555554  35566777888887777777753  667778888888888777777776777888888888877


Q ss_pred             CCccccCc-cccCCCCCCEEEccCCCCCc--cchhhhccc-hhccccCcCccCcC
Q 017975          219 HYLTELPV-GISSLVSLHHLDLSSTKVRG--LPQELKALV-LRMLHCGSNHWPIA  269 (363)
Q Consensus       219 ~~~~~lp~-~i~~L~~L~~L~l~~~~l~~--lP~~i~~L~-L~~L~~~~~~l~~l  269 (363)
                       .++.+|. .++++++|++|++++|.++.  +|..++.+. |+.|+++.|.++.+
T Consensus       135 -~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          135 -NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             -CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             -cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence             5666654 47778888888888877764  466677777 77777776665543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.68  E-value=1.3e-16  Score=157.33  Aligned_cols=173  Identities=21%  Similarity=0.222  Sum_probs=140.8

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL  221 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~  221 (363)
                      .+.+.+.+++.+|.-- .+++++|++++|.++.++  .|.++++|++|++++|.++.++++.|.++++|++|+|++| .+
T Consensus        35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l  112 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PI  112 (635)
T ss_dssp             EEECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CC
T ss_pred             EEECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cC
Confidence            4556777788777522 258999999999999987  4889999999999999999999988999999999999999 78


Q ss_pred             cccCc-cccCCCCCCEEEccCCCCCccch-hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEE
Q 017975          222 TELPV-GISSLVSLHHLDLSSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALS  298 (363)
Q Consensus       222 ~~lp~-~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~  298 (363)
                      +.+|. .++++++|++|++++|+++.+|. .++.++ |+.|+++.|.++.++        .|..+..+++|+.|++.+|.
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~--------~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--------LPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC--------CCGGGGGCTTCCEEECCSSC
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCC--------CchhhccchhhhhhcccCcc
Confidence            88875 58999999999999999999986 588999 999999999987653        45778889999999999988


Q ss_pred             eccCcccccccCCCchhhhhheeeecccC
Q 017975          299 LRGSRGVENFLKFPKLQNITQALHIKDCN  327 (363)
Q Consensus       299 ~~~~~~~~~l~~l~~l~~~L~~L~l~~~~  327 (363)
                      +.+..+ ..+..+.++......++++.+.
T Consensus       185 l~~~~~-~~l~~L~~l~~~~~~~~ls~n~  212 (635)
T 4g8a_A          185 IQSIYC-TDLRVLHQMPLLNLSLDLSLNP  212 (635)
T ss_dssp             CCEECG-GGGHHHHTCTTCCCEEECTTCC
T ss_pred             cccccc-ccccchhhhhhhhhhhhcccCc
Confidence            775543 4455555444444556666554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.68  E-value=7.2e-16  Score=146.18  Aligned_cols=112  Identities=24%  Similarity=0.312  Sum_probs=71.2

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccc
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE  223 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~  223 (363)
                      .+...+..+..++.+..++++++|++++|.++.++ +..+++|++|++++|.++.++   ++++++|++|++++| .++.
T Consensus        46 ~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~  120 (457)
T 3bz5_A           46 SLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTK  120 (457)
T ss_dssp             EEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSC
T ss_pred             EEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCe
Confidence            44555555555566666677777777777776664 666777777777777766653   566777777777777 5555


Q ss_pred             cCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcC
Q 017975          224 LPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSN  264 (363)
Q Consensus       224 lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~  264 (363)
                      +|  ++.+++|++|++++|.++.+|  ++.++ |+.|+++.|
T Consensus       121 l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          121 LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLN  158 (457)
T ss_dssp             CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTC
T ss_pred             ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCC
Confidence            54  666777777777777666654  44444 444444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.67  E-value=2.4e-16  Score=133.50  Aligned_cols=184  Identities=21%  Similarity=0.249  Sum_probs=133.8

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL  221 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~  221 (363)
                      .+.+.+.+++.+|.. ..+++++|++++|.++.++.  +..+++|++|++++|.++.+++..+..+++|++|++++| .+
T Consensus        11 ~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l   88 (208)
T 2o6s_A           11 TVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QL   88 (208)
T ss_dssp             EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred             EEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cC
Confidence            344555555555532 23588999999998888765  678899999999999998888877788999999999999 66


Q ss_pred             cccCcc-ccCCCCCCEEEccCCCCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEE
Q 017975          222 TELPVG-ISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALS  298 (363)
Q Consensus       222 ~~lp~~-i~~L~~L~~L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~  298 (363)
                      +.+|.. ++.+++|++|++++|.++.+|.. +..+. |+.|+++.|.++.+|.         ..+..+++|+.|++.+|.
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---------~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD---------GVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---------TTTTTCTTCCEEECCSCC
T ss_pred             CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH---------HHhccCCCccEEEecCCC
Confidence            666654 68899999999999999888765 57777 8888898888887763         446778888888888886


Q ss_pred             eccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975          299 LRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED  354 (363)
Q Consensus       299 ~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~  354 (363)
                      +.+.        .+++    +.|+++.+......+..++.++.    ++..|....
T Consensus       160 ~~~~--------~~~l----~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~  199 (208)
T 2o6s_A          160 WDCT--------CPGI----RYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSG  199 (208)
T ss_dssp             BCCC--------TTTT----HHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTC
T ss_pred             eecC--------CCCH----HHHHHHHHhCCceeeccCccccC----CccccccCC
Confidence            5532        3344    67777766644343445555544    455555433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.67  E-value=3.2e-16  Score=149.19  Aligned_cols=188  Identities=16%  Similarity=0.260  Sum_probs=158.9

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~  222 (363)
                      ..+...+..+...+.+..+++++.|++++|.++.++.+..+++|++|++++|.+...++  +..+++|++|++++| .+.
T Consensus       202 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~  278 (466)
T 1o6v_A          202 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN-QIS  278 (466)
T ss_dssp             SEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS-CCC
T ss_pred             CEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCC-ccC
Confidence            34555666666666677889999999999999999889999999999999999998877  899999999999999 677


Q ss_pred             ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975          223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG  301 (363)
Q Consensus       223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~  301 (363)
                      .+|. ++.+++|++|++++|.+..+|. +..+. |+.|+++.|.+..++          + +..+++|+.|++.+|.+.+
T Consensus       279 ~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~----------~-~~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          279 NISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDIS----------P-VSSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             CCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCG----------G-GGGCTTCCEEECCSSCCCC
T ss_pred             cccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCch----------h-hccCccCCEeECCCCccCC
Confidence            7775 9999999999999999999876 77888 999999999987765          2 6789999999999998776


Q ss_pred             CcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCc
Q 017975          302 SRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDW  355 (363)
Q Consensus       302 ~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~  355 (363)
                      .   ..+..++++    +.|++++|..... ++ +..+++|+.|++++|+....
T Consensus       346 ~---~~l~~l~~L----~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          346 V---SSLANLTNI----NWLSAGHNQISDL-TP-LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             C---GGGTTCTTC----CEEECCSSCCCBC-GG-GTTCTTCCEEECCCEEEECC
T ss_pred             c---hhhccCCCC----CEEeCCCCccCcc-ch-hhcCCCCCEEeccCCcccCC
Confidence            5   356667766    9999999875333 22 88999999999999988764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.67  E-value=1.3e-16  Score=155.44  Aligned_cols=197  Identities=19%  Similarity=0.185  Sum_probs=156.4

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      ..+.+.+.+++.+|.. -.+.+++|++++|.++.++  .+..+++|++|++++|.+..+++..|.++++|++|++++| .
T Consensus        10 ~~~~c~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~   87 (570)
T 2z63_A           10 ITYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-P   87 (570)
T ss_dssp             TEEECCSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred             cEEEeCCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-c
Confidence            4567777777777752 2368999999999999876  5789999999999999999998888999999999999999 5


Q ss_pred             ccccC-ccccCCCCCCEEEccCCCCCccch-hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEE
Q 017975          221 LTELP-VGISSLVSLHHLDLSSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIAL  297 (363)
Q Consensus       221 ~~~lp-~~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~  297 (363)
                      ++.+| ..++++++|++|++++|.++.+|. .++.++ |+.|+++.|.+..++        .|..+.++++|+.|++.+|
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~--------lp~~~~~l~~L~~L~l~~n  159 (570)
T 2z63_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--------LPEYFSNLTNLEHLDLSSN  159 (570)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC--------CCGGGGGCTTCCEEECTTS
T ss_pred             CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceec--------ChhhhcccCCCCEEeCcCC
Confidence            66654 789999999999999999999876 688888 999999999887532        3478899999999999988


Q ss_pred             EeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCC
Q 017975          298 SLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSN  351 (363)
Q Consensus       298 ~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~  351 (363)
                      .+.+..+ ..+..+.+++...+.|++++|......+..+..+ +|+.|++++|.
T Consensus       160 ~l~~~~~-~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~  211 (570)
T 2z63_A          160 KIQSIYC-TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNF  211 (570)
T ss_dssp             CCCEECG-GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred             ccceecH-HHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEeccccc
Confidence            8765433 4455555554434678888877544434455554 78999988874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.67  E-value=2.6e-16  Score=149.20  Aligned_cols=187  Identities=16%  Similarity=0.158  Sum_probs=136.0

Q ss_pred             CccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCC
Q 017975          155 APKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSL  234 (363)
Q Consensus       155 ~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L  234 (363)
                      ...+..++++++|++++|.++.+|.+..+++|++|++++|.++.++   ++.+++|++|++++| .++.+|  ++.+++|
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L  108 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKL  108 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTC
T ss_pred             ccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcC
Confidence            4456778999999999999999999999999999999999999974   789999999999999 677776  9999999


Q ss_pred             CEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCC---Cc-------ccchhhhccccccceEEEEeccCc
Q 017975          235 HHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSD---DA-------ESLMKEIHCLEQLNLIALSLRGSR  303 (363)
Q Consensus       235 ~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l---~~-------~~~l~~l~~L~~L~l~~~~~~~~~  303 (363)
                      ++|++++|.++.+|  ++.++ |+.|+++.|.++.++-+++..+   ..       .-.+..+++|+.|++.+|.+.+. 
T Consensus       109 ~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l-  185 (457)
T 3bz5_A          109 TYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-  185 (457)
T ss_dssp             CEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC-
T ss_pred             CEEECCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee-
Confidence            99999999999987  88888 9999999999988764333222   10       01355667777777777666542 


Q ss_pred             ccccccCCCch-----------------hhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcc
Q 017975          304 GVENFLKFPKL-----------------QNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWN  356 (363)
Q Consensus       304 ~~~~l~~l~~l-----------------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~  356 (363)
                      +   +..++++                 ...|+.|++++|.....  + +..+++|+.|++++|.+.+..
T Consensus       186 ~---l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~i--p-~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          186 D---VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI--D-VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             C---CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC--C-CTTCTTCSEEECCSSCCSCCC
T ss_pred             c---cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCccccc--C-ccccCCCCEEEeeCCcCCCcC
Confidence            1   2233322                 01125555555443221  1 555666666666666655443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.67  E-value=1.2e-16  Score=135.23  Aligned_cols=174  Identities=24%  Similarity=0.332  Sum_probs=143.8

Q ss_pred             eEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcc-ccCCCCCCEEEccCCC
Q 017975          165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTK  243 (363)
Q Consensus       165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~  243 (363)
                      +.++..++.++.+|. .-.++|++|++++|.++.+++..+..+++|++|++++| .++.+|.. +..+++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc
Confidence            467777788888774 23568999999999999999887899999999999999 67777654 6899999999999999


Q ss_pred             CCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhhee
Q 017975          244 VRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQAL  321 (363)
Q Consensus       244 l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L  321 (363)
                      ++.+|.. +..+. |+.|+++.|.++.+|.         ..+..+++|+.|++.+|.+.+..+ ..+..++++    +.|
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L----~~L  153 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPD---------GVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSL----QYI  153 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTC----CEE
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCH---------hHhccCCcCCEEECCCCccceeCH-HHhccCCCc----cEE
Confidence            9998875 57888 9999999999988873         457889999999999998875433 456667776    999


Q ss_pred             eecccCCCCcCCcccccccccceeeeccCCCCCccccccC
Q 017975          322 HIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDCAG  361 (363)
Q Consensus       322 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~  361 (363)
                      ++++|..       ...+++|+.|++++|...+.+|+..|
T Consensus       154 ~l~~N~~-------~~~~~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          154 WLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             ECCSCCB-------CCCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred             EecCCCe-------ecCCCCHHHHHHHHHhCCceeeccCc
Confidence            9999753       24567899999999999999987654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.67  E-value=4.4e-16  Score=141.59  Aligned_cols=186  Identities=18%  Similarity=0.205  Sum_probs=131.4

Q ss_pred             ccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEcc
Q 017975          162 EGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLS  240 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~  240 (363)
                      .+++.++++++.++.+|... .+++++|++++|.+..+++..+.++++|++|++++| .++.+ |..++++++|++|+++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred             ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence            36899999999999888633 479999999999999998877999999999999999 56655 7889999999999999


Q ss_pred             CCCCCccchhhhccc-hhccccCcCccCcCCC---CCCCCC--------------CcccchhhhccccccceE-------
Q 017975          241 STKVRGLPQELKALV-LRMLHCGSNHWPIAEE---GNVLSD--------------DAESLMKEIHCLEQLNLI-------  295 (363)
Q Consensus       241 ~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l--------------~~~~~l~~l~~L~~L~l~-------  295 (363)
                      +|.++.+|..+.  . |+.|+++.|.++.+|.   .++.++              ..+..+..+ +|+.|++.       
T Consensus       111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l  187 (332)
T 2ft3_A          111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI  187 (332)
T ss_dssp             SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred             CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence            999999998776  5 9999999999988875   222222              112223333 34444443       


Q ss_pred             --------------EEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975          296 --------------ALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD  358 (363)
Q Consensus       296 --------------~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~  358 (363)
                                    +|.+.+..+ ..+..++++    +.|++++|......+..+..+++|+.|++++|.+. .+|.
T Consensus       188 ~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~  258 (332)
T 2ft3_A          188 PKDLPETLNELHLDHNKIQAIEL-EDLLRYSKL----YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA  258 (332)
T ss_dssp             CSSSCSSCSCCBCCSSCCCCCCT-TSSTTCTTC----SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT
T ss_pred             CccccCCCCEEECCCCcCCccCH-HHhcCCCCC----CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecCh
Confidence                          333332211 233444444    67777766543333445677777777777777665 3443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.67  E-value=3.9e-16  Score=153.41  Aligned_cols=209  Identities=20%  Similarity=0.249  Sum_probs=122.7

Q ss_pred             eEEecCCCCCCC--ccccccccceEEEeeccccccc--CCCCCCCCccEEEeccCCccccchHHhcCCCCCC--EEEccc
Q 017975          144 FLVRAGVGLTDA--PKIEEWEGVKRISLMENEIQSL--PQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR--VLNLSV  217 (363)
Q Consensus       144 ~~~~~~~~~~~~--~~~~~~~~l~~L~l~~~~~~~l--~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~--~L~L~~  217 (363)
                      .+...+..+..+  ..+..++++++|++++|.+..+  |.+..+++|++|++++|.+..+++..++.+++|+  .|++++
T Consensus       109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~  188 (606)
T 3t6q_A          109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG  188 (606)
T ss_dssp             EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred             EeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence            444455555543  3355667788888888877765  5566678888888888888777776677777777  667766


Q ss_pred             CCCccccC------------------------------------------------------------------------
Q 017975          218 NHYLTELP------------------------------------------------------------------------  225 (363)
Q Consensus       218 ~~~~~~lp------------------------------------------------------------------------  225 (363)
                      | .+..++                                                                        
T Consensus       189 n-~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~  267 (606)
T 3t6q_A          189 N-DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF  267 (606)
T ss_dssp             C-CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred             C-ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence            6 222222                                                                        


Q ss_pred             ----ccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCC------CCCCCC---------Ccc-cchh
Q 017975          226 ----VGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEE------GNVLSD---------DAE-SLMK  284 (363)
Q Consensus       226 ----~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~------~~l~~l---------~~~-~~l~  284 (363)
                          ..++.+++|++|++++|.++.+|..+..++ |+.|+++.|.+..++.      .++..+         ..+ ..+.
T Consensus       268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  347 (606)
T 3t6q_A          268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE  347 (606)
T ss_dssp             SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred             ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence                125556666666666666666666666666 6666666666655532      111111         111 1245


Q ss_pred             hhccccccceEEEEeccCcc-cccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccc
Q 017975          285 EIHCLEQLNLIALSLRGSRG-VENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNV  357 (363)
Q Consensus       285 ~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~  357 (363)
                      .+++|+.|++.+|.+.+... ...+..++++    ++|++++|......+..+..+++|+.|++++|......|
T Consensus       348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  417 (606)
T 3t6q_A          348 NLENLRELDLSHDDIETSDCCNLQLRNLSHL----QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA  417 (606)
T ss_dssp             TCTTCCEEECCSSCCCEEEESTTTTTTCTTC----CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred             ccCcCCEEECCCCccccccCcchhcccCCCC----CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence            55555555555555443321 1234444444    666666665433334556666777777777776655443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=8.6e-17  Score=162.67  Aligned_cols=193  Identities=13%  Similarity=0.138  Sum_probs=135.5

Q ss_pred             cccccccceEEEeecccccc------------------cCC-CC--CCCCccEEEeccCCccccchHHhcCCCCCCEEEc
Q 017975          157 KIEEWEGVKRISLMENEIQS------------------LPQ-IP--TCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNL  215 (363)
Q Consensus       157 ~~~~~~~l~~L~l~~~~~~~------------------l~~-~~--~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L  215 (363)
                      .+..+++++.|++++|.++.                  +|. +.  ++++|++|++++|.+....|..++++++|++|++
T Consensus       443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI  522 (876)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred             HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence            46778899999999999887                  774 44  7899999999999876554555889999999999


Q ss_pred             ccCCCcc--ccCccccCCC-------CCCEEEccCCCCCccch--hhhccc-hhccccCcCccCcCCC-CCCCCC-----
Q 017975          216 SVNHYLT--ELPVGISSLV-------SLHHLDLSSTKVRGLPQ--ELKALV-LRMLHCGSNHWPIAEE-GNVLSD-----  277 (363)
Q Consensus       216 ~~~~~~~--~lp~~i~~L~-------~L~~L~l~~~~l~~lP~--~i~~L~-L~~L~~~~~~l~~lp~-~~l~~l-----  277 (363)
                      ++|+.++  .+|..++.+.       +|++|++++|.+..+|.  .++.+. |+.|+++.|.+..+|. +++..+     
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~L  602 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKL  602 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEEC
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEEC
Confidence            9995254  5887777666       89999999999889998  888888 9999999988887774 222111     


Q ss_pred             ------Ccccchhhhcc-ccccceEEEEeccCcccccccCCCchhhhhheeeecccCCC---CcCCcccc--ccccccee
Q 017975          278 ------DAESLMKEIHC-LEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSL---PLNLLHLA--NMEHLQLF  345 (363)
Q Consensus       278 ------~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~---~~~~~~l~--~l~~L~~L  345 (363)
                            .+|..+..+++ |+.|++.+|.+. ..| ..+.....  ..|+.|++++|...   +..+..+.  .+++|+.|
T Consensus       603 s~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp-~~~~~~~~--~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L  678 (876)
T 4ecn_A          603 DYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIP-NIFNAKSV--YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV  678 (876)
T ss_dssp             CSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCC-SCCCTTCS--SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred             cCCccccchHHHhhccccCCEEECcCCCCC-cCc-hhhhcccc--CCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence                  45566677777 777777777765 222 22222221  11377777776632   22122233  33478888


Q ss_pred             eeccCCCC
Q 017975          346 SIWDSNLE  353 (363)
Q Consensus       346 ~l~~c~~l  353 (363)
                      ++++|.+.
T Consensus       679 ~Ls~N~L~  686 (876)
T 4ecn_A          679 TLSYNEIQ  686 (876)
T ss_dssp             ECCSSCCC
T ss_pred             EccCCcCC
Confidence            88888776

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.66  E-value=4.1e-17  Score=163.08  Aligned_cols=112  Identities=14%  Similarity=0.205  Sum_probs=97.9

Q ss_pred             ccCCchhHHHHHHHHhcCC-CChhHHHHHHHHHhccccccccchHHHHHHHHhhcCCCCChhh-hHHHhHhcCCCCCccc
Q 017975            4 QCHGLPLALETVGQAMAGK-EFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDEL-RSCLLYCCLFPEDSEI   81 (363)
Q Consensus         4 ~c~GlPLai~~ig~~L~~~-~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~l-k~cfl~~s~Fp~~~~~   81 (363)
                      -|+|+||||+++|+.|+++ .+.++|+.+        .     .+.+..+|++||+.||+ ++ |.||+|||+||+++.|
T Consensus       322 ICgGLPLALkLaGs~Lr~k~~s~eeW~~~--------~-----~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I  387 (1221)
T 1vt4_I          322 VLTTNPRRLSIIAESIRDGLATWDNWKHV--------N-----CDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHI  387 (1221)
T ss_dssp             HCCCCHHHHHHHHHHHHHSCSSHHHHHHC--------S-----CHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCE
T ss_pred             HhCCCHHHHHHHHHHHhCCCCCHHHHhcC--------C-----hhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCC
Confidence            4999999999999999986 367888763        1     13899999999999999 78 9999999999999999


Q ss_pred             ChHHHHHHHHHhCCccCcCHHHHHHHHHHhhcccCC--CCceeechhHHHHHH
Q 017975           82 RKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEEG--GDHVKMHDMIRDMAL  132 (363)
Q Consensus        82 ~~~~li~~w~a~g~~~~~~~~~~~~~L~~rsli~~~--~~~~~mhdl~~~~~~  132 (363)
                      +++.++.+|+++|.   ..+..++++|+++|||+..  ...|+|||++++++.
T Consensus       388 ~~elLa~LW~aeGe---edAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          388 PTILLSLIWFDVIK---SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV  437 (1221)
T ss_dssp             EHHHHHHHHCSSCS---HHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred             CHHHHHHHhcCCCH---HHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence            99999999999982   2388999999999999983  578999999999663

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.66  E-value=4e-16  Score=152.03  Aligned_cols=191  Identities=19%  Similarity=0.163  Sum_probs=115.8

Q ss_pred             cccceEEEeecccccccCCCCCCCCccEEEeccCCccccc--hHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEE
Q 017975          161 WEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEIT--ESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLD  238 (363)
Q Consensus       161 ~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~  238 (363)
                      +++++.|++.+|.+........+++|++|++++|.+....  +..+..+++|++|++++| .+..+|..++.+++|++|+
T Consensus       324 l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~  402 (570)
T 2z63_A          324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLD  402 (570)
T ss_dssp             CSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEE
T ss_pred             ccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC-ccccccccccccCCCCEEE
Confidence            3445555555544443333356777888888888776653  333777888888888888 5666666677888888888


Q ss_pred             ccCCCCCccch--hhhccc-hhccccCcCccCcCCC---CCCCCC-------------CcccchhhhccccccceEEEEe
Q 017975          239 LSSTKVRGLPQ--ELKALV-LRMLHCGSNHWPIAEE---GNVLSD-------------DAESLMKEIHCLEQLNLIALSL  299 (363)
Q Consensus       239 l~~~~l~~lP~--~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l-------------~~~~~l~~l~~L~~L~l~~~~~  299 (363)
                      +++|.+...+.  .+..++ |+.|+++.|.+...+.   .++.++             ..|..+..+++|+.|++.+|.+
T Consensus       403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l  482 (570)
T 2z63_A          403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  482 (570)
T ss_dssp             CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence            88887776533  566666 7777777777655432   111111             2344555666666666666655


Q ss_pred             ccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccc
Q 017975          300 RGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNV  357 (363)
Q Consensus       300 ~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~  357 (363)
                      .+..+ ..+..++++    ++|++++|......+..+.++++|+.|++++|+.....|
T Consensus       483 ~~~~~-~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          483 EQLSP-TAFNSLSSL----QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             CEECT-TTTTTCTTC----CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccCCh-hhhhcccCC----CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            54332 344455554    666666665433333446666677777777766655443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.66  E-value=3.5e-16  Score=150.92  Aligned_cols=125  Identities=23%  Similarity=0.185  Sum_probs=105.8

Q ss_pred             eEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCCC
Q 017975          165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTK  243 (363)
Q Consensus       165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~  243 (363)
                      +++++++|.++.+|.... ++|++|++++|.+..+++..|.++++|++|++++| .++.+ |..++++++|++|++++|.
T Consensus         3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc
Confidence            679999999999986333 89999999999999999877999999999999999 55555 8899999999999999999


Q ss_pred             CCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975          244 VRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG  301 (363)
Q Consensus       244 l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~  301 (363)
                      ++.+|..  .+. |+.|+++.|.++.++        .|..++.+++|+.|++.+|.+.+
T Consensus        81 l~~lp~~--~l~~L~~L~L~~N~l~~~~--------~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           81 LVKISCH--PTVNLKHLDLSFNAFDALP--------ICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             CCEEECC--CCCCCSEEECCSSCCSSCC--------CCGGGGGCTTCCEEEEEESSCCG
T ss_pred             eeecCcc--ccCCccEEeccCCcccccc--------chhhhccCCcceEEEecCcccch
Confidence            9999988  777 999999999987643        33567777777777777766543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.65  E-value=5.1e-16  Score=138.50  Aligned_cols=163  Identities=18%  Similarity=0.286  Sum_probs=134.3

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~  222 (363)
                      ..+...+..+..++.+..+++++.|++++|.++.++.+..+++|++|++++|.++.++.  +..+++|++|++++| .++
T Consensus        49 ~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n-~i~  125 (291)
T 1h6t_A           49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN-GIS  125 (291)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTS-CCC
T ss_pred             cEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCC-cCC
Confidence            45666677777778888889999999999999988888899999999999999988765  889999999999999 677


Q ss_pred             ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975          223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG  301 (363)
Q Consensus       223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~  301 (363)
                      .++ .++.+++|++|++++|.++.+ ..+..++ |+.|++++|.++.++          . +..+++|+.|++.+|.+.+
T Consensus       126 ~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~----------~-l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          126 DIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV----------P-LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             CCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG----------G-GTTCTTCCEEECCSSCCCB
T ss_pred             CCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccch----------h-hcCCCccCEEECCCCcCCC
Confidence            775 788999999999999999988 5778888 999999999887776          3 7778888888888887765


Q ss_pred             CcccccccCCCchhhhhheeeecccCC
Q 017975          302 SRGVENFLKFPKLQNITQALHIKDCNS  328 (363)
Q Consensus       302 ~~~~~~l~~l~~l~~~L~~L~l~~~~~  328 (363)
                      .   +.+..++++    +.|++++|..
T Consensus       193 l---~~l~~l~~L----~~L~l~~n~i  212 (291)
T 1h6t_A          193 L---RALAGLKNL----DVLELFSQEC  212 (291)
T ss_dssp             C---GGGTTCTTC----SEEEEEEEEE
T ss_pred             C---hhhccCCCC----CEEECcCCcc
Confidence            3   235666665    8888888763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.65  E-value=3e-15  Score=135.91  Aligned_cols=201  Identities=17%  Similarity=0.219  Sum_probs=137.7

Q ss_pred             eEEecCCCCCCC--ccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975          144 FLVRAGVGLTDA--PKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL  221 (363)
Q Consensus       144 ~~~~~~~~~~~~--~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~  221 (363)
                      .+...+..+..+  ..+..++++++|++++|.++.+|.... ++|++|++++|.+..+++..+.++++|++|++++| .+
T Consensus        80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l  157 (330)
T 1xku_A           80 TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PL  157 (330)
T ss_dssp             EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CC
T ss_pred             EEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCC-cC
Confidence            444455555444  245566778888888887777764322 67888888888888887777888888888888888 34


Q ss_pred             c---ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCC---C---CCCCC---------Ccccc
Q 017975          222 T---ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEE---G---NVLSD---------DAESL  282 (363)
Q Consensus       222 ~---~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~---~---~l~~l---------~~~~~  282 (363)
                      .   ..|..++.+++|++|++++|.++.+|..+.  . |+.|+++.|.++.++.   .   ++..+         ..+..
T Consensus       158 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  235 (330)
T 1xku_A          158 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS  235 (330)
T ss_dssp             CGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             CccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh
Confidence            3   456678888888888888888887776554  4 6777777777666543   2   22222         12346


Q ss_pred             hhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccc------cccccceeeeccCCCCC
Q 017975          283 MKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLA------NMEHLQLFSIWDSNLED  354 (363)
Q Consensus       283 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~------~l~~L~~L~l~~c~~l~  354 (363)
                      +..+++|+.|++.+|.+... + ..+..++++    ++|++++|.........+.      ....|+.|++++|+...
T Consensus       236 ~~~l~~L~~L~L~~N~l~~l-p-~~l~~l~~L----~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          236 LANTPHLRELHLNNNKLVKV-P-GGLADHKYI----QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             GGGSTTCCEEECCSSCCSSC-C-TTTTTCSSC----CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             ccCCCCCCEEECCCCcCccC-C-hhhccCCCc----CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            78889999999999987733 2 346666666    9999999874332222232      34788899999998764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.65  E-value=2.1e-16  Score=142.52  Aligned_cols=178  Identities=19%  Similarity=0.137  Sum_probs=111.3

Q ss_pred             cccccceEEEeecccccccCC-CCCC-----CCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccc--cCccc--
Q 017975          159 EEWEGVKRISLMENEIQSLPQ-IPTC-----PRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE--LPVGI--  228 (363)
Q Consensus       159 ~~~~~l~~L~l~~~~~~~l~~-~~~l-----~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~--lp~~i--  228 (363)
                      ..++++++|++++|.++.+|. +..+     ++|++|++++|.+..+++..++++++|++|++++|+..+.  +|..+  
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            456677777777777766543 2222     6777777777777777655577777777777777743332  34444  


Q ss_pred             cCCCCCCEEEccCCCCCccch---hh-hccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCc
Q 017975          229 SSLVSLHHLDLSSTKVRGLPQ---EL-KALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSR  303 (363)
Q Consensus       229 ~~L~~L~~L~l~~~~l~~lP~---~i-~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~  303 (363)
                      +.+++|++|++++|.++.+|.   .+ ..++ |+.|+++.|.++..++        ...+..+++|+.|++.+|.+.. .
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~~l~~L~~L~Ls~N~l~~-i  268 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG--------APSCDWPSQLNSLNLSFTGLKQ-V  268 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC--------CSCCCCCTTCCEEECTTSCCSS-C
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc--------hhhhhhcCCCCEEECCCCccCh-h
Confidence            667777777777777774432   22 3445 7777777777655431        1234456778888888887763 3


Q ss_pred             ccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975          304 GVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED  354 (363)
Q Consensus       304 ~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~  354 (363)
                      + ..+.  ++    |++|++++|+-... + .+..+++|+.|++++|++.+
T Consensus       269 p-~~~~--~~----L~~L~Ls~N~l~~~-p-~~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          269 P-KGLP--AK----LSVLDLSYNRLDRN-P-SPDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             C-SSCC--SE----EEEEECCSSCCCSC-C-CTTTSCEEEEEECTTCTTTC
T ss_pred             h-hhcc--CC----ceEEECCCCCCCCC-h-hHhhCCCCCEEeccCCCCCC
Confidence            3 2222  33    48888888764222 3 37788888888888887654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.64  E-value=6.9e-16  Score=129.52  Aligned_cols=152  Identities=15%  Similarity=0.197  Sum_probs=111.4

Q ss_pred             ccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEE
Q 017975          158 IEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHL  237 (363)
Q Consensus       158 ~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L  237 (363)
                      ...+++++.|++++|.++.+|.+..+++|++|++++|.+..++.  +..+++|++|++++|......|..++.+++|++|
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            36678899999999999998888899999999999998777653  8899999999999994444578899999999999


Q ss_pred             EccCCCCCc-cchhhhccc-hhccccCcCc-cCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCch
Q 017975          238 DLSSTKVRG-LPQELKALV-LRMLHCGSNH-WPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKL  314 (363)
Q Consensus       238 ~l~~~~l~~-lP~~i~~L~-L~~L~~~~~~-l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l  314 (363)
                      ++++|.++. .|..+..++ |+.|+++.|. ++.+|           .+                         ..++++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-----------~l-------------------------~~l~~L  161 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-----------PL-------------------------KTLPEL  161 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-----------GG-------------------------GGCSSC
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-----------hh-------------------------cCCCCC
Confidence            999998886 566777777 7777777665 43332           22                         333343


Q ss_pred             hhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975          315 QNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       315 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l  353 (363)
                          +.|++++|... . +..+..+++|+.|++++|++-
T Consensus       162 ----~~L~l~~n~i~-~-~~~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          162 ----KSLNIQFDGVH-D-YRGIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             ----CEEECTTBCCC-C-CTTGGGCSSCCEEEECBC---
T ss_pred             ----CEEECCCCCCc-C-hHHhccCCCCCEEEeeCcccC
Confidence                56666665421 1 225667777888888877753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=3.8e-17  Score=143.60  Aligned_cols=156  Identities=23%  Similarity=0.295  Sum_probs=127.6

Q ss_pred             CCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccc
Q 017975          149 GVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI  228 (363)
Q Consensus       149 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i  228 (363)
                      +..++.++.+..+++++.|++++|.++.++.+..+++|++|++++|.++.+++  +.++++|++|++++| .++.+|. +
T Consensus        28 ~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~-~  103 (263)
T 1xeu_A           28 KQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNG-I  103 (263)
T ss_dssp             CSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTT-C
T ss_pred             CCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCc-c
Confidence            34455566677888999999999999999888899999999999999998877  889999999999999 7777874 3


Q ss_pred             cCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCccccc
Q 017975          229 SSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVEN  307 (363)
Q Consensus       229 ~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  307 (363)
                      .. .+|++|++++|.++.+| .+..+. |+.|++++|+++.+|           .+..+++|+.|++.+|.+.+.   ..
T Consensus       104 ~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-----------~l~~l~~L~~L~L~~N~i~~~---~~  167 (263)
T 1xeu_A          104 PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-----------MLGFLSKLEVLDLHGNEITNT---GG  167 (263)
T ss_dssp             CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-----------GGGGCTTCCEEECTTSCCCBC---TT
T ss_pred             cc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-----------HHccCCCCCEEECCCCcCcch---HH
Confidence            44 89999999999999886 577888 999999999887664           477788888998888887765   44


Q ss_pred             ccCCCchhhhhheeeecccCC
Q 017975          308 FLKFPKLQNITQALHIKDCNS  328 (363)
Q Consensus       308 l~~l~~l~~~L~~L~l~~~~~  328 (363)
                      +..++++    +.|++++|..
T Consensus       168 l~~l~~L----~~L~l~~N~~  184 (263)
T 1xeu_A          168 LTRLKKV----NWIDLTGQKC  184 (263)
T ss_dssp             STTCCCC----CEEEEEEEEE
T ss_pred             hccCCCC----CEEeCCCCcc
Confidence            5666666    8888888764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.64  E-value=6.6e-16  Score=157.46  Aligned_cols=181  Identities=21%  Similarity=0.230  Sum_probs=152.9

Q ss_pred             eEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCCC
Q 017975          165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTK  243 (363)
Q Consensus       165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~  243 (363)
                      +..+.++++++.+|.  ..+++++|++++|.++.+++..|.++++|++|+|++|.....+ |..++++++|++|+|++|.
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~   84 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK   84 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence            466777888999998  6689999999999999987777999999999999999767777 7889999999999999999


Q ss_pred             CCcc-chhhhccc-hhccccCcCccCc-CCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhhe
Q 017975          244 VRGL-PQELKALV-LRMLHCGSNHWPI-AEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQA  320 (363)
Q Consensus       244 l~~l-P~~i~~L~-L~~L~~~~~~l~~-lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~  320 (363)
                      +..+ |..+..+. |+.|+++.|.+.. +|.        ...+..+++|+.|++++|.+.+..+...+..+++|    ++
T Consensus        85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L----~~  152 (844)
T 3j0a_A           85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLK--------DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL----KS  152 (844)
T ss_dssp             CCEECTTSSCSCSSCCCEECTTCCCSSCCST--------TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC----CE
T ss_pred             CcccCHhHccCCcccCEeeCcCCCCCccccc--------CccccccCCCCEEECCCCcccccccchhHhhCCCC----CE
Confidence            9987 78899999 9999999998875 331        12478899999999999999877655678888888    99


Q ss_pred             eeecccCCCCcCCcccccc--cccceeeeccCCCCCccccc
Q 017975          321 LHIKDCNSLPLNLLHLANM--EHLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       321 L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~c~~l~~~~~~  359 (363)
                      |++++|......+..+..+  ++|+.|++++|......|..
T Consensus       153 L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~  193 (844)
T 3j0a_A          153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD  193 (844)
T ss_dssp             EEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC
T ss_pred             EECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc
Confidence            9999987544445667776  89999999999988766543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.64  E-value=2.9e-16  Score=141.54  Aligned_cols=182  Identities=20%  Similarity=0.209  Sum_probs=143.9

Q ss_pred             ccccceEEEeecccccc-cCC-C--CCCCCccEEEeccCCccccchHHhcCC-----CCCCEEEcccCCCccccC-cccc
Q 017975          160 EWEGVKRISLMENEIQS-LPQ-I--PTCPRLQTLLLEYNHIEEITESFFQSL-----PSLRVLNLSVNHYLTELP-VGIS  229 (363)
Q Consensus       160 ~~~~l~~L~l~~~~~~~-l~~-~--~~l~~L~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~L~~~~~~~~lp-~~i~  229 (363)
                      .++++++|++++|.++. +|. +  ..+++|++|++++|.++..|.. ++.+     ++|++|++++| .+..+| ..++
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~  170 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAELQQWLKPGLKVLSIAQA-HSLNFSCEQVR  170 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-HHHHHTTCCTTCCEEEEESC-SCCCCCTTTCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH-HHHHHHhhcCCCcEEEeeCC-CCccchHHHhc
Confidence            46799999999999984 554 3  7899999999999999988544 6666     99999999999 555555 8999


Q ss_pred             CCCCCCEEEccCCCCCc---cchhh--hccc-hhccccCcCccCcCCCCCCCCCCcc-cchhhhccccccceEEEEeccC
Q 017975          230 SLVSLHHLDLSSTKVRG---LPQEL--KALV-LRMLHCGSNHWPIAEEGNVLSDDAE-SLMKEIHCLEQLNLIALSLRGS  302 (363)
Q Consensus       230 ~L~~L~~L~l~~~~l~~---lP~~i--~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~-~~l~~l~~L~~L~l~~~~~~~~  302 (363)
                      .+++|++|++++|.+..   +|..+  ..+. |+.|+++.|.++.++.       .+ ..+..+++|+.|++.+|.+.+.
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~~~~l~~L~~L~Ls~N~l~~~  243 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG-------VCSALAAARVQLQGLDLSHNSLRDA  243 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH-------HHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH-------HHHHHHhcCCCCCEEECCCCcCCcc
Confidence            99999999999998765   45566  7788 9999999999875541       11 2335678999999999999876


Q ss_pred             cccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975          303 RGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD  358 (363)
Q Consensus       303 ~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~  358 (363)
                      .+...+..++++    ++|++++|... ..+..+.  ++|+.|++++|.+.+. |.
T Consensus       244 ~~~~~~~~l~~L----~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~  291 (312)
T 1wwl_A          244 AGAPSCDWPSQL----NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS  291 (312)
T ss_dssp             CCCSCCCCCTTC----CEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC
T ss_pred             cchhhhhhcCCC----CEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh
Confidence            654555556666    99999998743 3344454  8999999999988766 44

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.63  E-value=7.4e-16  Score=149.56  Aligned_cols=174  Identities=21%  Similarity=0.242  Sum_probs=146.0

Q ss_pred             EEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCCCC
Q 017975          166 RISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKV  244 (363)
Q Consensus       166 ~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l  244 (363)
                      ..+.+++.++.+|... .++|++|++++|.++.+++..+.++++|++|++++| .++.+ |..++.+++|++|++++|.+
T Consensus         9 ~c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A            9 VCDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             EEECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             eEECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCcc
Confidence            3577778888888632 379999999999999988777999999999999999 55555 57899999999999999999


Q ss_pred             Cccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheee
Q 017975          245 RGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALH  322 (363)
Q Consensus       245 ~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~  322 (363)
                      +.+|.. ++.+. |+.|+++.|.++.++        .|..+..+++|+.|++.+|...+..+...+..++++    ++|+
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L----~~L~  154 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGNPYQTLG--------VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL----NELE  154 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTCCCSSSC--------SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE----EEEE
T ss_pred             CccCHHHhccCCCCcEEECCCCcccccc--------hhhhhhccCCccEEECCCCccccccCHhhhhccccc----Ceee
Confidence            998765 89999 999999999987553        236788999999999999985555555677888877    9999


Q ss_pred             ecccCCCCcCCcccccccccceeeeccCCCC
Q 017975          323 IKDCNSLPLNLLHLANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       323 l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l  353 (363)
                      +++|......+..+..+++|+.|++++|...
T Consensus       155 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             EEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred             ccCCcccccChhhhhccccCceEecccCccc
Confidence            9998865555678999999999999998754

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.63  E-value=6.8e-16  Score=150.82  Aligned_cols=163  Identities=19%  Similarity=0.294  Sum_probs=131.0

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccc
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE  223 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~  223 (363)
                      .+...+..+..++.+..+++|+.|++++|.+..++.+..+++|+.|++++|.+..++.  +..+++|++|+|++| .+..
T Consensus        47 ~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N-~l~~  123 (605)
T 1m9s_A           47 QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHN-GISD  123 (605)
T ss_dssp             CCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTT--STTCTTCCEEECTTS-CCCC
T ss_pred             EEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChh--hccCCCCCEEEecCC-CCCC
Confidence            3445556667777788888999999999998888888889999999999998888763  888999999999999 6777


Q ss_pred             cCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccC
Q 017975          224 LPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGS  302 (363)
Q Consensus       224 lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~  302 (363)
                      +| .+..+++|++|+|++|.+..+ ..+..+. |+.|+++.|.+..++          + +..+++|+.|++.+|.+.+.
T Consensus       124 l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~----------~-l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          124 IN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV----------P-LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             CG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG----------G-GTTCTTCCEEECCSSCCCBC
T ss_pred             Cc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCch----------h-hccCCCCCEEECcCCCCCCC
Confidence            65 688899999999999998888 5777888 999999988887765          3 77788888888888877654


Q ss_pred             cccccccCCCchhhhhheeeecccCCC
Q 017975          303 RGVENFLKFPKLQNITQALHIKDCNSL  329 (363)
Q Consensus       303 ~~~~~l~~l~~l~~~L~~L~l~~~~~~  329 (363)
                         +.+..+++|    +.|++++|...
T Consensus       191 ---~~l~~l~~L----~~L~L~~N~l~  210 (605)
T 1m9s_A          191 ---RALAGLKNL----DVLELFSQECL  210 (605)
T ss_dssp             ---GGGTTCTTC----SEEECCSEEEE
T ss_pred             ---hHHccCCCC----CEEEccCCcCc
Confidence               345666666    88888887743

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.63  E-value=1.3e-15  Score=151.61  Aligned_cols=205  Identities=22%  Similarity=0.212  Sum_probs=150.1

Q ss_pred             eEEecCCCCCCCc--cccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCC
Q 017975          144 FLVRAGVGLTDAP--KIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH  219 (363)
Q Consensus       144 ~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~  219 (363)
                      .+...+..+..++  .+..+++++.|++++|.++.+|.  +..+++|++|++++|.+..+++..|+++++|++|++++|.
T Consensus        53 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  132 (680)
T 1ziw_A           53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG  132 (680)
T ss_dssp             EEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc
Confidence            4444444444442  35667888999998888888874  7888999999999998888887668889999999999985


Q ss_pred             CccccCccccCCCCCCEEEccCCCCCccchh-hh--ccc-hhccccCcCccCcCCCC---C---C---------------
Q 017975          220 YLTELPVGISSLVSLHHLDLSSTKVRGLPQE-LK--ALV-LRMLHCGSNHWPIAEEG---N---V---------------  274 (363)
Q Consensus       220 ~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~-i~--~L~-L~~L~~~~~~l~~lp~~---~---l---------------  274 (363)
                      .....|..++++++|++|++++|.++.+|.. +.  .+. |+.|+++.|.++.++..   +   +               
T Consensus       133 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~  212 (680)
T 1ziw_A          133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT  212 (680)
T ss_dssp             CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHH
T ss_pred             ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhH
Confidence            4455567788899999999999988887653 33  334 88888888888776541   1   1               


Q ss_pred             ------------CCC---------Ccccchhhhcc--ccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCc
Q 017975          275 ------------LSD---------DAESLMKEIHC--LEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPL  331 (363)
Q Consensus       275 ------------~~l---------~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~  331 (363)
                                  ..+         ..|..+..++.  |+.|++.+|.+.+..+ ..+..++++    ++|++++|.....
T Consensus       213 ~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L----~~L~L~~n~l~~~  287 (680)
T 1ziw_A          213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN-DSFAWLPQL----EYFFLEYNNIQHL  287 (680)
T ss_dssp             HHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT-TTTTTCTTC----CEEECCSCCBSEE
T ss_pred             HHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc-ccccCcccc----cEeeCCCCccCcc
Confidence                        111         12344555554  8888888887765433 556677776    9999999876555


Q ss_pred             CCcccccccccceeeeccCCCC
Q 017975          332 NLLHLANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       332 ~~~~l~~l~~L~~L~l~~c~~l  353 (363)
                      .+..+..+++|+.|++++|...
T Consensus       288 ~~~~~~~l~~L~~L~L~~~~~~  309 (680)
T 1ziw_A          288 FSHSLHGLFNVRYLNLKRSFTK  309 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTCBCC
T ss_pred             ChhhhcCCCCccEEeccchhhh
Confidence            5668999999999999987644

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=1.9e-16  Score=151.38  Aligned_cols=196  Identities=16%  Similarity=0.141  Sum_probs=109.5

Q ss_pred             eeEEecCCCCCCCc--cccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975          143 KFLVRAGVGLTDAP--KIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       143 ~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      ..+...+..+..++  .+..+++++.|++++|.+...+.+..+++|++|++++|.++.+++.     ++|++|++++| .
T Consensus        37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~-----~~L~~L~L~~N-~  110 (487)
T 3oja_A           37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANN-N  110 (487)
T ss_dssp             CEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC-----TTCCEEECCSS-C
T ss_pred             cEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC-----CCcCEEECcCC-c
Confidence            45555666665554  4566778888888888877666677777788888877777665532     44555555555 3


Q ss_pred             ccccCccccCCCCCCEEEccCCCCCcc-chhhhccc-hhccccCcCccCcCCC----CCCCCC----------Ccccchh
Q 017975          221 LTELPVGISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWPIAEE----GNVLSD----------DAESLMK  284 (363)
Q Consensus       221 ~~~lp~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~-L~~L~~~~~~l~~lp~----~~l~~l----------~~~~~l~  284 (363)
                      +..+|.  ..+++|++|++++|.++.+ |..++.+. |+.|++++|.+...+.    .++.++          ...+...
T Consensus       111 l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~  188 (487)
T 3oja_A          111 ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV  188 (487)
T ss_dssp             CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC
T ss_pred             CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc
Confidence            333332  1234555555555555544 23444444 5555555555443221    000000          0001222


Q ss_pred             hhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975          285 EIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       285 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l  353 (363)
                      .+++|+.|++++|.+.+..+  .+..++++    +.|++++|... ..+..+..+++|+.|++++|+..
T Consensus       189 ~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L----~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          189 VFAKLKTLDLSSNKLAFMGP--EFQSAAGV----TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCTTCCEEECCSSCCCEECG--GGGGGTTC----SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred             cCCCCCEEECCCCCCCCCCH--hHcCCCCc----cEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence            46677777777776664332  25555554    77777776532 23445667777777777777765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=5.3e-16  Score=136.27  Aligned_cols=143  Identities=17%  Similarity=0.241  Sum_probs=125.0

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~  222 (363)
                      ..+...+..+..++.+..+++++.|++++|.++.++.+..+++|++|++++|.++.+++  +.. ++|++|++++| .++
T Consensus        44 ~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N-~l~  119 (263)
T 1xeu_A           44 QNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNN-ELR  119 (263)
T ss_dssp             SEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTT--CCC-SSCCEEECCSS-CCS
T ss_pred             cEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCc--ccc-CcccEEEccCC-ccC
Confidence            46677777888888888899999999999999999889999999999999999998876  444 99999999999 777


Q ss_pred             ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975          223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG  301 (363)
Q Consensus       223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~  301 (363)
                      .+| .++.+++|++|++++|.++.+| .+..+. |+.|+++.|.++.++           .+..+++|+.|++.+|.+..
T Consensus       120 ~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~-----------~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          120 DTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTG-----------GLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             BSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCT-----------TSTTCCCCCEEEEEEEEEEC
T ss_pred             CCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchH-----------HhccCCCCCEEeCCCCcccC
Confidence            776 6999999999999999999997 688888 999999999987653           57788999999999999876


Q ss_pred             C
Q 017975          302 S  302 (363)
Q Consensus       302 ~  302 (363)
                      .
T Consensus       187 ~  187 (263)
T 1xeu_A          187 E  187 (263)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.62  E-value=1.9e-15  Score=147.90  Aligned_cols=199  Identities=19%  Similarity=0.156  Sum_probs=95.8

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccc
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE  223 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~  223 (363)
                      .+...++.++.++.  .+++++.|++++|.++.+|.  .+++|++|++++|.++.++.    .+++|++|++++| .++.
T Consensus        65 ~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N-~l~~  135 (622)
T 3g06_A           65 TLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGN-QLTS  135 (622)
T ss_dssp             EEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSS-CCSC
T ss_pred             EEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCC-CCCc
Confidence            33444444444443  33455555555555555554  44555555555555555443    2344444444444 3444


Q ss_pred             cCccccCCCCCCEEEccCCCCCccchhhhcc-----------------c-hhccccCcCccCcCCC--CCCCCC------
Q 017975          224 LPVGISSLVSLHHLDLSSTKVRGLPQELKAL-----------------V-LRMLHCGSNHWPIAEE--GNVLSD------  277 (363)
Q Consensus       224 lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L-----------------~-L~~L~~~~~~l~~lp~--~~l~~l------  277 (363)
                      +|..   +++|++|++++|.++.+|..+.+|                 . |+.|++++|.++.+|.  .++..+      
T Consensus       136 lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~  212 (622)
T 3g06_A          136 LPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNR  212 (622)
T ss_dssp             CCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             CCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCc
Confidence            4432   244555555555544443322221                 3 4555555555555443  222111      


Q ss_pred             --CcccchhhhccccccceEEEEeccCcc-----------cccccCCCchhhhhheeeecccCCCCcCCcccccccccce
Q 017975          278 --DAESLMKEIHCLEQLNLIALSLRGSRG-----------VENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQL  344 (363)
Q Consensus       278 --~~~~~l~~l~~L~~L~l~~~~~~~~~~-----------~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  344 (363)
                        .+|.   .+++|+.|++.+|.+.+...           ...+..++.....|+.|++++|... ..+..+.++++|+.
T Consensus       213 l~~l~~---~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~  288 (622)
T 3g06_A          213 LTSLPA---LPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETT  288 (622)
T ss_dssp             CSSCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCC-SCCGGGGGSCTTCE
T ss_pred             ccccCC---CCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCC-cCCHHHhhccccCE
Confidence              1111   12344444444444332110           0001111222234578888887543 44567888888999


Q ss_pred             eeeccCCCCCcccc
Q 017975          345 FSIWDSNLEDWNVD  358 (363)
Q Consensus       345 L~l~~c~~l~~~~~  358 (363)
                      |++++|++.+..|.
T Consensus       289 L~L~~N~l~~~~~~  302 (622)
T 3g06_A          289 VNLEGNPLSERTLQ  302 (622)
T ss_dssp             EECCSCCCCHHHHH
T ss_pred             EEecCCCCCCcCHH
Confidence            99999888766554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.62  E-value=1.4e-15  Score=148.07  Aligned_cols=148  Identities=22%  Similarity=0.234  Sum_probs=116.8

Q ss_pred             ccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEcc
Q 017975          162 EGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLS  240 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~  240 (363)
                      ...++++++++.++.+|.-. .++|++|++++|.+..+++..|.++++|++|++++| .++.+ |..++++++|++|+++
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls  108 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVS  108 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECT
T ss_pred             CCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECC
Confidence            44589999999999998632 389999999999999999877999999999999999 56665 7789999999999999


Q ss_pred             CCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhh
Q 017975          241 STKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQ  319 (363)
Q Consensus       241 ~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~  319 (363)
                      +|.++.+|..  .+. |+.|+++.|.++.+|        .|..++.+++|+.|++.+|.+...    .+..++++  .|+
T Consensus       109 ~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~--------~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L--~L~  172 (562)
T 3a79_B          109 HNRLQNISCC--PMASLRHLDLSFNDFDVLP--------VCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHL--HLS  172 (562)
T ss_dssp             TSCCCEECSC--CCTTCSEEECCSSCCSBCC--------CCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTS--CEE
T ss_pred             CCcCCccCcc--ccccCCEEECCCCCccccC--------chHhhcccCcccEEecCCCccccC----chhhhhhc--eee
Confidence            9999999988  777 999999999998765        345677777788777777766542    22223322  236


Q ss_pred             eeeecccC
Q 017975          320 ALHIKDCN  327 (363)
Q Consensus       320 ~L~l~~~~  327 (363)
                      .|++++|.
T Consensus       173 ~L~L~~n~  180 (562)
T 3a79_B          173 CILLDLVS  180 (562)
T ss_dssp             EEEEEESS
T ss_pred             EEEeeccc
Confidence            66666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.62  E-value=1.5e-15  Score=130.58  Aligned_cols=147  Identities=23%  Similarity=0.289  Sum_probs=119.4

Q ss_pred             EEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975          145 LVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~  222 (363)
                      +.+.+..+..+|.. -.++++.|++++|.++.++.  +..+++|++|++++|.+..+++..|..+++|++|+|++| .++
T Consensus        24 v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~  101 (229)
T 3e6j_A           24 VDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLT  101 (229)
T ss_dssp             EECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred             eEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCC
Confidence            55566666666642 23789999999999888743  678899999999999998888877889999999999999 677


Q ss_pred             ccCcc-ccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEec
Q 017975          223 ELPVG-ISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLR  300 (363)
Q Consensus       223 ~lp~~-i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~  300 (363)
                      .+|.. +..+++|++|++++|.++.+|..+..+. |+.|+++.|.++.+|.         ..+..+++|+.|++.+|.+.
T Consensus       102 ~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~---------~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          102 VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH---------GAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT---------TTTTTCTTCCEEECTTSCBC
T ss_pred             ccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH---------HHHhCCCCCCEEEeeCCCcc
Confidence            77654 6889999999999999999999888888 9999999999888773         45677888888888888776


Q ss_pred             cC
Q 017975          301 GS  302 (363)
Q Consensus       301 ~~  302 (363)
                      ..
T Consensus       173 c~  174 (229)
T 3e6j_A          173 CE  174 (229)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.61  E-value=1.8e-15  Score=146.45  Aligned_cols=186  Identities=17%  Similarity=0.159  Sum_probs=144.6

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~  222 (363)
                      ..+...+..+..+|... .++++.|++++|.++.+|  ..+++|++|++++|.++.+|.  +.+  +|++|++++| .++
T Consensus        62 ~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N-~l~  133 (571)
T 3cvr_A           62 SELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNN-QLT  133 (571)
T ss_dssp             SEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSS-CCS
T ss_pred             cEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCC-cCC
Confidence            45666666777666522 378999999999999998  668999999999999999877  554  9999999999 788


Q ss_pred             ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975          223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG  301 (363)
Q Consensus       223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~  301 (363)
                      .+|.   .+++|++|++++|.++.+|.   .+. |+.|++++|.++.+|          . +.  ++|+.|++.+|.+..
T Consensus       134 ~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp----------~-l~--~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          134 MLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLP----------E-LP--ESLEALDVSTNLLES  194 (571)
T ss_dssp             CCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC----------C-CC--TTCCEEECCSSCCSS
T ss_pred             CCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcc----------h-hh--CCCCEEECcCCCCCc
Confidence            8987   68999999999999999997   455 899999999998887          3 33  899999999998873


Q ss_pred             CcccccccC-CCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975          302 SRGVENFLK-FPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       302 ~~~~~~l~~-l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  359 (363)
                      . |.  +.. +......++.|++++|... ..+..+..+++|+.|++++|++.+.+|..
T Consensus       195 l-p~--~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          195 L-PA--VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             C-CC--CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred             h-hh--HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence            3 21  222 1111112399999997643 44667888999999999999998877654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=2.1e-15  Score=126.54  Aligned_cols=146  Identities=18%  Similarity=0.214  Sum_probs=123.5

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~  222 (363)
                      ..+...+..+..++.+..+++++.|++++|.++.++.+..+++|++|++++|.++...+..++.+++|++|++++|....
T Consensus        47 ~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~  126 (197)
T 4ezg_A           47 TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD  126 (197)
T ss_dssp             CEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred             cEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence            45666777777878888999999999999999988889999999999999999987444448999999999999995444


Q ss_pred             ccCccccCCCCCCEEEccCCC-CCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEec
Q 017975          223 ELPVGISSLVSLHHLDLSSTK-VRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLR  300 (363)
Q Consensus       223 ~lp~~i~~L~~L~~L~l~~~~-l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~  300 (363)
                      ..|..++.+++|++|++++|. +..+| .+..++ |+.|++++|.++.++           .+..+++|+.|++.+|.+.
T Consensus       127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-----------~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-----------GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-----------TGGGCSSCCEEEECBC---
T ss_pred             HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-----------HhccCCCCCEEEeeCcccC
Confidence            578899999999999999997 88887 688888 999999999887664           5677888899988888764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.61  E-value=7.1e-16  Score=147.45  Aligned_cols=178  Identities=21%  Similarity=0.250  Sum_probs=132.7

Q ss_pred             ccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEE
Q 017975          160 EWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHL  237 (363)
Q Consensus       160 ~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L  237 (363)
                      .+++++.|++++|.+..++  .+..+++|++|++++|.++..++  +..+++|++|+|++| .++.+|..    ++|++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~~----~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLVG----PSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEEC----TTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCCC----CCcCEE
Confidence            3458999999999999876  48899999999999999998776  899999999999999 77777633    899999


Q ss_pred             EccCCCCCccchhhhccc-hhccccCcCccCcCCC---CCCCCC------------Ccccchh-hhccccccceEEEEec
Q 017975          238 DLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEE---GNVLSD------------DAESLMK-EIHCLEQLNLIALSLR  300 (363)
Q Consensus       238 ~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~---~~l~~l------------~~~~~l~-~l~~L~~L~l~~~~~~  300 (363)
                      ++++|.+..+|..  .+. |+.|++++|.++.+++   +++.++            ..|..+. .+++|+.|++.+|.+.
T Consensus       105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            9999999998754  345 8889999999887754   122211            2333343 5667777777776665


Q ss_pred             cCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975          301 GSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED  354 (363)
Q Consensus       301 ~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~  354 (363)
                      +..+   +..++++    +.|++++|... ..++.+..+++|+.|++++|.+..
T Consensus       183 ~~~~---~~~l~~L----~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          183 DVKG---QVVFAKL----KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             EEEC---CCCCTTC----CEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE
T ss_pred             cccc---cccCCCC----CEEECCCCCCC-CCCHhHcCCCCccEEEecCCcCcc
Confidence            4421   2234444    88888887643 234457788888889988888764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.60  E-value=1.1e-15  Score=137.59  Aligned_cols=192  Identities=17%  Similarity=0.110  Sum_probs=139.8

Q ss_pred             eeEEecCCCCCCC-c-cc--cccccceEEEeeccccccc-C-----CCCCCCCccEEEeccCCccccchHHhcCCCCCCE
Q 017975          143 KFLVRAGVGLTDA-P-KI--EEWEGVKRISLMENEIQSL-P-----QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRV  212 (363)
Q Consensus       143 ~~~~~~~~~~~~~-~-~~--~~~~~l~~L~l~~~~~~~l-~-----~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~  212 (363)
                      ..+...+..+... + .+  ..+++++.|++++|.+... +     .+..+++|++|++++|.+..+++..++.+++|++
T Consensus        94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  173 (310)
T 4glp_A           94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTS  173 (310)
T ss_dssp             CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCE
T ss_pred             eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCE
Confidence            3444555554432 2 22  6678899999999988752 1     2346889999999999998888877889999999


Q ss_pred             EEcccCCCccc--cC--ccccCCCCCCEEEccCCCCCccchh----hhccc-hhccccCcCccCcC-CCCCCCCCCcccc
Q 017975          213 LNLSVNHYLTE--LP--VGISSLVSLHHLDLSSTKVRGLPQE----LKALV-LRMLHCGSNHWPIA-EEGNVLSDDAESL  282 (363)
Q Consensus       213 L~L~~~~~~~~--lp--~~i~~L~~L~~L~l~~~~l~~lP~~----i~~L~-L~~L~~~~~~l~~l-p~~~l~~l~~~~~  282 (363)
                      |++++|+..+.  +|  ..++.+++|++|++++|.++.+|..    +..+. |+.|+++.|.+... |          ..
T Consensus       174 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p----------~~  243 (310)
T 4glp_A          174 LDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN----------PS  243 (310)
T ss_dssp             EECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC----------SC
T ss_pred             EECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch----------hh
Confidence            99999943331  32  2347889999999999999877663    45666 99999999998776 4          34


Q ss_pred             hhhh---ccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975          283 MKEI---HCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED  354 (363)
Q Consensus       283 l~~l---~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~  354 (363)
                      +..+   ++|+.|++.+|.+... + ..+.  +    .|+.|++++|.-...  +.+..+++|+.|++++|++..
T Consensus       244 ~~~~~~~~~L~~L~Ls~N~l~~l-p-~~~~--~----~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          244 APRCMWSSALNSLNLSFAGLEQV-P-KGLP--A----KLRVLDLSSNRLNRA--PQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CSSCCCCTTCCCEECCSSCCCSC-C-SCCC--S----CCSCEECCSCCCCSC--CCTTSCCCCSCEECSSTTTSC
T ss_pred             HHhccCcCcCCEEECCCCCCCch-h-hhhc--C----CCCEEECCCCcCCCC--chhhhCCCccEEECcCCCCCC
Confidence            4444   6899999999988743 3 2222  3    459999999874322  236778999999999998764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.60  E-value=2.7e-15  Score=128.17  Aligned_cols=150  Identities=27%  Similarity=0.356  Sum_probs=124.7

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      ..+.+.+..++.+|... .+.++.|++++|.++.++  .+..+++|++|++++|.++.+.+..|.++++|++|+|++| .
T Consensus        14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-K   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-C
T ss_pred             CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-c
Confidence            34566677777776532 268999999999999887  4788999999999999999987777999999999999999 7


Q ss_pred             ccccCcc-ccCCCCCCEEEccCCCCCcc-chhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEE
Q 017975          221 LTELPVG-ISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIAL  297 (363)
Q Consensus       221 ~~~lp~~-i~~L~~L~~L~l~~~~l~~l-P~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~  297 (363)
                      ++.+|.. +..+++|++|++++|.++.+ |..+..+. |+.|+++.|.++.++.         ..+..+++|+.|++.+|
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK---------GTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---------TTTTTCTTCCEEECCSS
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH---------HHHhCCCCCCEEEeCCC
Confidence            7788765 58899999999999999987 45678888 9999999999988873         45777889999999999


Q ss_pred             EeccCc
Q 017975          298 SLRGSR  303 (363)
Q Consensus       298 ~~~~~~  303 (363)
                      .+....
T Consensus       163 ~~~c~c  168 (220)
T 2v9t_B          163 PFICDC  168 (220)
T ss_dssp             CEECSG
T ss_pred             CcCCCC
Confidence            887543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.60  E-value=1.2e-15  Score=137.74  Aligned_cols=192  Identities=17%  Similarity=0.143  Sum_probs=106.8

Q ss_pred             eeEEecCCCCCCCc--cccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHH----------------h
Q 017975          143 KFLVRAGVGLTDAP--KIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESF----------------F  204 (363)
Q Consensus       143 ~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~----------------~  204 (363)
                      ..+...+..+..++  .+..+++++.|++++|.+...+.+..+++|++|++++|.++.+++..                .
T Consensus        37 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~  116 (317)
T 3o53_A           37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC  116 (317)
T ss_dssp             SEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEE
T ss_pred             CEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCc
Confidence            34555555555543  35566677777777777766555666677777777776665544210                0


Q ss_pred             cCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCCCCCccc-hhh-hccc-hhccccCcCccCcCCCCCCCCCCcc
Q 017975          205 QSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTKVRGLP-QEL-KALV-LRMLHCGSNHWPIAEEGNVLSDDAE  280 (363)
Q Consensus       205 ~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~lP-~~i-~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~  280 (363)
                      ..+++|++|++++| .++.+ |..++.+++|++|++++|.+..++ ..+ ..+. |+.|+++.|.++.+|          
T Consensus       117 ~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------  185 (317)
T 3o53_A          117 SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK----------  185 (317)
T ss_dssp             CCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE----------
T ss_pred             cccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc----------
Confidence            12334444444444 22222 224444455555555555554432 222 2333 555555555444433          


Q ss_pred             cchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975          281 SLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       281 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l  353 (363)
                       ....+++|+.|++.+|.+.+..+  .+..++++    +.|++++|... ..+..+..+++|+.|++++|+..
T Consensus       186 -~~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L----~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          186 -GQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGV----TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             -CCCCCTTCCEEECCSSCCCEECG--GGGGGTTC----SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             -cccccccCCEEECCCCcCCcchh--hhcccCcc----cEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence             12236777777777777664332  25555555    88888887543 33456777788888888888876

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.59  E-value=3.2e-15  Score=127.68  Aligned_cols=148  Identities=24%  Similarity=0.340  Sum_probs=123.9

Q ss_pred             eEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCCC
Q 017975          165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTK  243 (363)
Q Consensus       165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~  243 (363)
                      +.++..++.++.+|... .++++.|++++|.++.+++..|..+++|++|+|++| .+..+ |..+.++++|++|+|++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc
Confidence            57888889999888632 278999999999999999877999999999999999 55555 8899999999999999999


Q ss_pred             CCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhhee
Q 017975          244 VRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQAL  321 (363)
Q Consensus       244 l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L  321 (363)
                      ++.+|.. +..+. |+.|+++.|.++.++.         ..+..+++|+.|++.+|.+.+..+ ..+..++++    +.|
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~---------~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L----~~L  157 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRV---------DAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAI----QTM  157 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTC----CEE
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCH---------HHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCC----CEE
Confidence            9999876 46788 9999999999888763         567788899999999998876543 456666666    888


Q ss_pred             eecccCC
Q 017975          322 HIKDCNS  328 (363)
Q Consensus       322 ~l~~~~~  328 (363)
                      ++++|..
T Consensus       158 ~L~~N~~  164 (220)
T 2v9t_B          158 HLAQNPF  164 (220)
T ss_dssp             ECCSSCE
T ss_pred             EeCCCCc
Confidence            8888763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.59  E-value=9.7e-16  Score=138.42  Aligned_cols=181  Identities=20%  Similarity=0.213  Sum_probs=122.3

Q ss_pred             ccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEE
Q 017975          160 EWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHL  237 (363)
Q Consensus       160 ~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L  237 (363)
                      .+++++.|++++|.++.++  .+..+++|++|++++|.++..++  +..+++|++|++++| .++.+|.    .++|++|
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~L  104 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETL  104 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-ccccccC----CCCcCEE
Confidence            3468999999999999876  47899999999999999988776  899999999999999 6666552    2556666


Q ss_pred             EccCCCCCccchhhhccc-hhccccCcCccCcCCC---C---CCCCC---------Ccccch-hhhccccccceEEEEec
Q 017975          238 DLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEE---G---NVLSD---------DAESLM-KEIHCLEQLNLIALSLR  300 (363)
Q Consensus       238 ~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~---~---~l~~l---------~~~~~l-~~l~~L~~L~l~~~~~~  300 (363)
                      ++++|.+..+|...  +. |+.|+++.|.++.++.   .   ++..+         ..+..+ ..+++|+.|++.+|.+.
T Consensus       105 ~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          105 HAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             ECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             ECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            66666555544321  23 5555555555554432   0   11111         112333 46778888888888766


Q ss_pred             cCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCcccc
Q 017975          301 GSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVD  358 (363)
Q Consensus       301 ~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~  358 (363)
                      +..   ....++++    ++|++++|... ..+..+..+++|+.|++++|.+.. +|+
T Consensus       183 ~~~---~~~~l~~L----~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~-l~~  231 (317)
T 3o53_A          183 DVK---GQVVFAKL----KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEK  231 (317)
T ss_dssp             EEE---CCCCCTTC----CEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE-ECT
T ss_pred             ccc---cccccccC----CEEECCCCcCC-cchhhhcccCcccEEECcCCcccc-hhh
Confidence            542   22334444    89999987643 234458889999999999998764 444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.58  E-value=5.1e-15  Score=126.43  Aligned_cols=150  Identities=21%  Similarity=0.264  Sum_probs=125.8

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccCC---CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ---IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~---~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      .+...+..++.+|.. -...++.|++++|.++.++.   +..+++|++|++++|.++.+++..|.++++|++|+|++| .
T Consensus        15 ~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~   92 (220)
T 2v70_A           15 TVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-R   92 (220)
T ss_dssp             EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred             EeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-c
Confidence            556666777777642 23568899999999998843   678999999999999999999877999999999999999 5


Q ss_pred             ccccCc-cccCCCCCCEEEccCCCCCcc-chhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEE
Q 017975          221 LTELPV-GISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIAL  297 (363)
Q Consensus       221 ~~~lp~-~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~  297 (363)
                      ++.+|. .++.+++|++|++++|.++.+ |..+..+. |+.|+++.|.++.+++         ..+..+++|+.|++.+|
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP---------GAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT---------TTTTTCTTCCEEECCSC
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH---------HHhcCCCCCCEEEecCc
Confidence            666654 589999999999999999997 66788888 9999999999988752         67888999999999999


Q ss_pred             EeccCcc
Q 017975          298 SLRGSRG  304 (363)
Q Consensus       298 ~~~~~~~  304 (363)
                      .+....+
T Consensus       164 ~l~c~c~  170 (220)
T 2v70_A          164 PFNCNCY  170 (220)
T ss_dssp             CEECSGG
T ss_pred             CCcCCCc
Confidence            9886654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.58  E-value=5.8e-15  Score=126.91  Aligned_cols=148  Identities=26%  Similarity=0.294  Sum_probs=124.8

Q ss_pred             ceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcc-ccCCCCCCEEEccCC
Q 017975          164 VKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSST  242 (363)
Q Consensus       164 l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~  242 (363)
                      .+.++.+++.+..+|.. -.++|++|++++|.++.+++..+.++++|++|+|++| .++.+|.. +..+++|++|++++|
T Consensus        21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence            45688888888888863 2389999999999999998877999999999999999 67887754 689999999999999


Q ss_pred             CCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhhe
Q 017975          243 KVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQA  320 (363)
Q Consensus       243 ~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~  320 (363)
                      .++.+|.. +..+. |+.|++++|.++.+|          ..+..+++|+.|++.+|.+.+..+ ..+..++++    +.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp----------~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L----~~  163 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLTELP----------RGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSL----TH  163 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCSCC----------TTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTC----CE
T ss_pred             cCCccChhHhCcchhhCeEeccCCcccccC----------cccccCCCCCEEECCCCcCCccCH-HHHhCCCCC----CE
Confidence            99999875 57788 999999999999887          677889999999999998875543 556666666    88


Q ss_pred             eeecccCC
Q 017975          321 LHIKDCNS  328 (363)
Q Consensus       321 L~l~~~~~  328 (363)
                      |++++|..
T Consensus       164 L~l~~N~~  171 (229)
T 3e6j_A          164 AYLFGNPW  171 (229)
T ss_dssp             EECTTSCB
T ss_pred             EEeeCCCc
Confidence            99998764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.57  E-value=2.6e-15  Score=138.14  Aligned_cols=170  Identities=24%  Similarity=0.297  Sum_probs=120.9

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccCC--CC-CCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IP-TCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      .+.+.+..++.+|.. -...++.|++++|.++.++.  +. .+++|++|++++|.++.+++..|.++++|++|+|++| .
T Consensus        22 ~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~   99 (361)
T 2xot_A           22 ILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-H   99 (361)
T ss_dssp             EEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred             EEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-c
Confidence            456666667766642 23468888888888888764  44 7888888888888888888777888888888888888 5


Q ss_pred             ccccCc-cccCCCCCCEEEccCCCCCcc-chhhhccc-hhccccCcCccCcCCCCCCCCCCcccch---hhhccccccce
Q 017975          221 LTELPV-GISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLM---KEIHCLEQLNL  294 (363)
Q Consensus       221 ~~~lp~-~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l---~~l~~L~~L~l  294 (363)
                      ++.+|. .+..+++|++|+|++|.+..+ |..+..+. |+.|+++.|.++.+|.         ..+   ..+++|+.|++
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~---------~~~~~~~~l~~L~~L~L  170 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV---------ELIKDGNKLPKLMLLDL  170 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG---------GGTC----CTTCCEEEC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH---------HHhcCcccCCcCCEEEC
Confidence            666654 578888888888888888877 55677777 8888888888887773         222   45777888888


Q ss_pred             EEEEeccCcccccccCCCchhhhhheeeecccC
Q 017975          295 IALSLRGSRGVENFLKFPKLQNITQALHIKDCN  327 (363)
Q Consensus       295 ~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~  327 (363)
                      .+|.+... +...+..++.+  .++.|++++|.
T Consensus       171 ~~N~l~~l-~~~~~~~l~~~--~l~~l~l~~N~  200 (361)
T 2xot_A          171 SSNKLKKL-PLTDLQKLPAW--VKNGLYLHNNP  200 (361)
T ss_dssp             CSSCCCCC-CHHHHHHSCHH--HHTTEECCSSC
T ss_pred             CCCCCCcc-CHHHhhhccHh--hcceEEecCCC
Confidence            87777643 22344444432  13667777765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.57  E-value=1.5e-14  Score=141.59  Aligned_cols=144  Identities=22%  Similarity=0.245  Sum_probs=113.1

Q ss_pred             ceeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975          142 EKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL  221 (363)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~  221 (363)
                      ...+.+.+..++.+|.... ++++.|++++|.++.+|.  .+++|++|++++|.++.+|.    .+++|++|++++| .+
T Consensus        42 l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l  113 (622)
T 3g06_A           42 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PL  113 (622)
T ss_dssp             CCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CC
T ss_pred             CcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cC
Confidence            4567778888887776333 799999999999999987  68999999999999998876    6899999999999 78


Q ss_pred             cccCccccCCCCCCEEEccCCCCCccchhhhccchhccccCcCccCcCCC--CCCCCC--------Ccccchhhhccccc
Q 017975          222 TELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEE--GNVLSD--------DAESLMKEIHCLEQ  291 (363)
Q Consensus       222 ~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~L~~L~~~~~~l~~lp~--~~l~~l--------~~~~~l~~l~~L~~  291 (363)
                      +.+|.   .+.+|++|++++|+++.+|..+.+  |+.|++++|.++.+|.  .++..+        .+|   ..+++|+.
T Consensus       114 ~~l~~---~l~~L~~L~L~~N~l~~lp~~l~~--L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~  185 (622)
T 3g06_A          114 THLPA---LPSGLCKLWIFGNQLTSLPVLPPG--LQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP---MLPSGLQE  185 (622)
T ss_dssp             CCCCC---CCTTCCEEECCSSCCSCCCCCCTT--CCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCE
T ss_pred             CCCCC---CCCCcCEEECCCCCCCcCCCCCCC--CCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcE
Confidence            88886   678999999999999999986422  7888889999988875  333322        111   23366777


Q ss_pred             cceEEEEecc
Q 017975          292 LNLIALSLRG  301 (363)
Q Consensus       292 L~l~~~~~~~  301 (363)
                      |++.+|.+.+
T Consensus       186 L~Ls~N~l~~  195 (622)
T 3g06_A          186 LSVSDNQLAS  195 (622)
T ss_dssp             EECCSSCCSC
T ss_pred             EECCCCCCCC
Confidence            7777666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.57  E-value=4.4e-15  Score=133.63  Aligned_cols=183  Identities=17%  Similarity=0.105  Sum_probs=137.9

Q ss_pred             cccceEEEeeccccccc-CC-C--CCCCCccEEEeccCCccccc----hHHhcCCCCCCEEEcccCCCccccCccccCCC
Q 017975          161 WEGVKRISLMENEIQSL-PQ-I--PTCPRLQTLLLEYNHIEEIT----ESFFQSLPSLRVLNLSVNHYLTELPVGISSLV  232 (363)
Q Consensus       161 ~~~l~~L~l~~~~~~~l-~~-~--~~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~  232 (363)
                      .+++++|++++|.+... |. +  ..+++|++|++++|.+....    ...+..+++|++|++++|......|..++.++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            45799999999998764 32 3  78999999999999987632    23356899999999999954444557899999


Q ss_pred             CCCEEEccCCCCCc---cchh--hhccc-hhccccCcCccCcCCCCCCCCCCccc-chhhhccccccceEEEEeccCccc
Q 017975          233 SLHHLDLSSTKVRG---LPQE--LKALV-LRMLHCGSNHWPIAEEGNVLSDDAES-LMKEIHCLEQLNLIALSLRGSRGV  305 (363)
Q Consensus       233 ~L~~L~l~~~~l~~---lP~~--i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~-~l~~l~~L~~L~l~~~~~~~~~~~  305 (363)
                      +|++|++++|++..   +|..  +..++ |+.|+++.|+++.+|.       .+. .+..+++|+.|++++|.+.+..| 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-------~~~~l~~~l~~L~~L~Ls~N~l~~~~p-  241 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-------VCAALAAAGVQPHSLDLSHNSLRATVN-  241 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-------HHHHHHHHTCCCSSEECTTSCCCCCCC-
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-------HHHHHHhcCCCCCEEECCCCCCCccch-
Confidence            99999999999765   4433  36777 9999999999876651       112 25788999999999999987654 


Q ss_pred             ccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCc
Q 017975          306 ENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDW  355 (363)
Q Consensus       306 ~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~  355 (363)
                      ..+..+..+ ..|++|++++|... ..+..+.  ++|+.|++++|.+...
T Consensus       242 ~~~~~~~~~-~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          242 PSAPRCMWS-SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             SCCSSCCCC-TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC
T ss_pred             hhHHhccCc-CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC
Confidence            334444311 23499999998753 3244443  7999999999998763

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.57  E-value=1.6e-15  Score=148.72  Aligned_cols=128  Identities=17%  Similarity=0.291  Sum_probs=105.7

Q ss_pred             CccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccccc-c----ccchHHHHHHHHhhcCCCCChhhhHHHhHhcCC
Q 017975            1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASK-F----EDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLF   75 (363)
Q Consensus         1 Iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~-~----~~~~~~i~~~L~~sy~~L~~~~lk~cfl~~s~F   75 (363)
                      |+++|+|+||||+.+|+.|+.+  ...|+.+++.+...... +    ......+..++..||+.||+ +.|.||+++|+|
T Consensus       313 i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f  389 (591)
T 1z6t_A          313 IIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSIL  389 (591)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGC
T ss_pred             HHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHcccc
Confidence            5789999999999999999874  34799998888765422 1    11223789999999999999 899999999999


Q ss_pred             CCCcccChHHHHHHHHHhCCccCcCHHHHHHHHHHhhcccC----CCCceeechhHHHHHHHHh
Q 017975           76 PEDSEIRKTDLIVYWESEGLLDSIGGWDVLGALVRACLLEE----GGDHVKMHDMIRDMALWIA  135 (363)
Q Consensus        76 p~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~L~~rsli~~----~~~~~~mhdl~~~~~~~i~  135 (363)
                      |+|+.|+.+.++.+|.+++.    .+..++++|+++|||+.    ....|+||++++++++...
T Consensus       390 ~~~~~i~~~~l~~l~~~~~~----~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          390 QKDVKVPTKVLCILWDMETE----EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             CTTCCEEHHHHHHHHTCCHH----HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred             CCCCccCHHHHHHHhccCHH----HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence            99999999999999965421    27788999999999986    2347999999999998763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.56  E-value=6.4e-15  Score=125.81  Aligned_cols=147  Identities=18%  Similarity=0.275  Sum_probs=120.9

Q ss_pred             eEEEeecccccccCCCCCCCCccEEEeccCCccccc-hHHhcCCCCCCEEEcccCCCccccCc-cccCCCCCCEEEccCC
Q 017975          165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEIT-ESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSST  242 (363)
Q Consensus       165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~  242 (363)
                      +.++++++.++.+|.. -.+.+++|++++|.++.++ ...|..+++|++|++++| .++.+|. .++.+++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC
Confidence            5899999999998852 2456799999999999884 455889999999999999 6766654 7999999999999999


Q ss_pred             CCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhhe
Q 017975          243 KVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQA  320 (363)
Q Consensus       243 ~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~  320 (363)
                      .++.+|.. +..+. |+.|+++.|.++.+++         ..+..+++|+.|++.+|.+.+..+ ..+..++++    +.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L----~~  157 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGN---------DSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSL----ST  157 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCT---------TSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTC----CE
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECH---------hHcCCCccCCEEECCCCcCCEECH-HHhcCCCCC----CE
Confidence            99998764 78888 9999999999887753         567788899999998888876544 556666666    88


Q ss_pred             eeecccC
Q 017975          321 LHIKDCN  327 (363)
Q Consensus       321 L~l~~~~  327 (363)
                      |++++|.
T Consensus       158 L~L~~N~  164 (220)
T 2v70_A          158 LNLLANP  164 (220)
T ss_dssp             EECCSCC
T ss_pred             EEecCcC
Confidence            8888876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.56  E-value=3.1e-14  Score=134.80  Aligned_cols=100  Identities=24%  Similarity=0.401  Sum_probs=47.1

Q ss_pred             ccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccC
Q 017975          162 EGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSS  241 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~  241 (363)
                      ++++.|++++|.++.++...  ++|++|++++|.++.+| . ++++++|++|++++| .++.+|..+   .+|++|++++
T Consensus       111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~  182 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGN  182 (454)
T ss_dssp             TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCS
T ss_pred             CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcC
Confidence            34444444444444433221  34555555555555544 2 455555555555555 344444332   2455555555


Q ss_pred             CCCCccchhhhccc-hhccccCcCccCcCC
Q 017975          242 TKVRGLPQELKALV-LRMLHCGSNHWPIAE  270 (363)
Q Consensus       242 ~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp  270 (363)
                      |.++.+| +++.++ |+.|+++.|.++.+|
T Consensus       183 n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~  211 (454)
T 1jl5_A          183 NQLEELP-ELQNLPFLTAIYADNNSLKKLP  211 (454)
T ss_dssp             SCCSSCC-CCTTCTTCCEEECCSSCCSSCC
T ss_pred             CcCCcCc-cccCCCCCCEEECCCCcCCcCC
Confidence            5555544 344444 555555555444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.55  E-value=2.1e-14  Score=136.03  Aligned_cols=39  Identities=28%  Similarity=0.393  Sum_probs=19.2

Q ss_pred             CCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccch
Q 017975          209 SLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQ  249 (363)
Q Consensus       209 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~  249 (363)
                      +|++|++++| .++.+| .++.+++|++|++++|.++.+|.
T Consensus       216 ~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~  254 (454)
T 1jl5_A          216 SLESIVAGNN-ILEELP-ELQNLPFLTTIYADNNLLKTLPD  254 (454)
T ss_dssp             TCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCCS
T ss_pred             cccEEECcCC-cCCccc-ccCCCCCCCEEECCCCcCCcccc
Confidence            3444444444 333444 35555555555555555555543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.55  E-value=1e-15  Score=139.16  Aligned_cols=181  Identities=22%  Similarity=0.283  Sum_probs=121.8

Q ss_pred             cccccccceEEEeecccccc--cC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc--ccCccccCC
Q 017975          157 KIEEWEGVKRISLMENEIQS--LP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT--ELPVGISSL  231 (363)
Q Consensus       157 ~~~~~~~l~~L~l~~~~~~~--l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~--~lp~~i~~L  231 (363)
                      ....++++++|++++|.+..  ++ .+..+++|++|++++|.+....+..+..+++|++|++++|..++  .+|..+..+
T Consensus        88 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~  167 (336)
T 2ast_B           88 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  167 (336)
T ss_dssp             SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence            34566788889988887754  33 35678888888888888776555557888888888888885555  367678888


Q ss_pred             CCCCEEEccCC-CCCc--cchhhhccc--hhccccCcCc--cCcCCCCCCCCCCcccchhhhccccccceEEEE-eccCc
Q 017975          232 VSLHHLDLSST-KVRG--LPQELKALV--LRMLHCGSNH--WPIAEEGNVLSDDAESLMKEIHCLEQLNLIALS-LRGSR  303 (363)
Q Consensus       232 ~~L~~L~l~~~-~l~~--lP~~i~~L~--L~~L~~~~~~--l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~-~~~~~  303 (363)
                      ++|++|++++| .++.  +|..+..++  |+.|++++|.  ++.        ...+..+..+++|+.|++.+|. +.+. 
T Consensus       168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~--------~~l~~~~~~~~~L~~L~l~~~~~l~~~-  238 (336)
T 2ast_B          168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK--------SDLSTLVRRCPNLVHLDLSDSVMLKND-  238 (336)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH--------HHHHHHHHHCTTCSEEECTTCTTCCGG-
T ss_pred             CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH--------HHHHHHHhhCCCCCEEeCCCCCcCCHH-
Confidence            88888888888 8875  566666665  7777777763  211        0123455667777777777776 3322 


Q ss_pred             ccccccCCCchhhhhheeeecccCC-CCcCCcccccccccceeeeccC
Q 017975          304 GVENFLKFPKLQNITQALHIKDCNS-LPLNLLHLANMEHLQLFSIWDS  350 (363)
Q Consensus       304 ~~~~l~~l~~l~~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~c  350 (363)
                      ....+..++++    ++|++++|.. .+..+..+.++++|+.|++++|
T Consensus       239 ~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          239 CFQEFFQLNYL----QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGGGGCTTC----CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HHHHHhCCCCC----CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            22345555554    7777777753 2222335666777777777777

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.54  E-value=1.3e-14  Score=133.50  Aligned_cols=124  Identities=23%  Similarity=0.277  Sum_probs=58.7

Q ss_pred             EEEeecccccccCCCCCCCCccEEEeccCCccccchHHhc-CCCCCCEEEcccCCCccccC-ccccCCCCCCEEEccCCC
Q 017975          166 RISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQ-SLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTK  243 (363)
Q Consensus       166 ~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~  243 (363)
                      .++++++.++.+|.. -.+.++.|++++|.++.+++..+. ++++|++|+|++| .+..+| ..+..+++|++|+|++|.
T Consensus        22 ~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           22 ILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             EEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc
Confidence            444445555444431 123345555555555555444343 4555555555555 333333 235555555555555555


Q ss_pred             CCccch-hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEec
Q 017975          244 VRGLPQ-ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLR  300 (363)
Q Consensus       244 l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~  300 (363)
                      ++.+|. .+..+. |+.|+++.|.+..++.         ..+..+++|+.|++.+|.+.
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~---------~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDR---------NAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECT---------TTTTTCTTCCEEECCSSCCC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECH---------HHhCCcccCCEEECCCCcCC
Confidence            555443 234444 5555555555444431         33444555555555555444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.52  E-value=2.9e-14  Score=130.52  Aligned_cols=126  Identities=17%  Similarity=0.239  Sum_probs=92.5

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCcc-ccchHHhcCCCCCCEE-EcccCC
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIE-EITESFFQSLPSLRVL-NLSVNH  219 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L-~L~~~~  219 (363)
                      .+.+.+..++.+|.-- .++++.|++++|.++.+|.  +.++++|++|++++|.+. .+++..|.++++|+.+ .+++| 
T Consensus        13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N-   90 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN-   90 (350)
T ss_dssp             EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET-
T ss_pred             EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC-
Confidence            4667777788777522 3689999999999999984  789999999999999874 4677778889887764 45555 


Q ss_pred             Ccccc-CccccCCCCCCEEEccCCCCCccchhh--hccchhcccc-CcCccCcCCC
Q 017975          220 YLTEL-PVGISSLVSLHHLDLSSTKVRGLPQEL--KALVLRMLHC-GSNHWPIAEE  271 (363)
Q Consensus       220 ~~~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i--~~L~L~~L~~-~~~~l~~lp~  271 (363)
                      .++.+ |..+..+++|++|++++|.++.+|...  ..+.+..+++ +++.+..+|.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~  146 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER  146 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT
T ss_pred             cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc
Confidence            67776 567899999999999999998877532  2222444433 3455665553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=1.7e-14  Score=118.70  Aligned_cols=137  Identities=16%  Similarity=0.210  Sum_probs=112.5

Q ss_pred             ccccccccceEEEeecccccccCCCCCCC-CccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccc-cCCCC
Q 017975          156 PKIEEWEGVKRISLMENEIQSLPQIPTCP-RLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI-SSLVS  233 (363)
Q Consensus       156 ~~~~~~~~l~~L~l~~~~~~~l~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i-~~L~~  233 (363)
                      +....+.+++.|++++|.++.++.+..+. +|++|++++|.++.+ +. +..+++|++|++++| .++.+|..+ +.+++
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG-FPLLRRLKTLLVNNN-RICRIGEGLDQALPD   89 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CC-CCCCSSCCEEECCSS-CCCEECSCHHHHCTT
T ss_pred             HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cc-cccCCCCCEEECCCC-cccccCcchhhcCCC
Confidence            33445678999999999999888877666 999999999999887 33 899999999999999 778888665 89999


Q ss_pred             CCEEEccCCCCCccch--hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975          234 LHHLDLSSTKVRGLPQ--ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG  301 (363)
Q Consensus       234 L~~L~l~~~~l~~lP~--~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~  301 (363)
                      |++|++++|.+..+|.  .+..++ |+.|+++.|.+..+|.      .....+..+++|+.|++..|....
T Consensus        90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~------~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH------YRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT------HHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh------HHHHHHHHCCccceeCCCcCCHHH
Confidence            9999999999999987  788888 9999999999887772      000137888899999988887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.52  E-value=2.9e-15  Score=136.19  Aligned_cols=178  Identities=18%  Similarity=0.141  Sum_probs=140.9

Q ss_pred             ccceEEEeeccccccc-CCCCCCCCccEEEeccCCcccc-chHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 017975          162 EGVKRISLMENEIQSL-PQIPTCPRLQTLLLEYNHIEEI-TESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDL  239 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l-~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l  239 (363)
                      +.++.+++.+|.+... +.+..+++|++|++++|.+... .+..+..+++|++|++++|......|..++.+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            6889999999988775 4577899999999999998753 4455899999999999999544467889999999999999


Q ss_pred             cCC-CCCc--cchhhhccc-hhccccCcC-ccCcCCCCCCCCCCcccchhhhc-cccccceEEEE--eccCcccccccCC
Q 017975          240 SST-KVRG--LPQELKALV-LRMLHCGSN-HWPIAEEGNVLSDDAESLMKEIH-CLEQLNLIALS--LRGSRGVENFLKF  311 (363)
Q Consensus       240 ~~~-~l~~--lP~~i~~L~-L~~L~~~~~-~l~~lp~~~l~~l~~~~~l~~l~-~L~~L~l~~~~--~~~~~~~~~l~~l  311 (363)
                      ++| .++.  +|..+..++ |+.|+++.| .++..        ..+..+..++ +|+.|++.+|.  +....-...+..+
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~--------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~  221 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK--------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC  221 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH--------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH--------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC
Confidence            999 7884  788888888 999999988 76531        1236688899 99999998884  3322112334555


Q ss_pred             CchhhhhheeeecccCCC-CcCCcccccccccceeeeccCC
Q 017975          312 PKLQNITQALHIKDCNSL-PLNLLHLANMEHLQLFSIWDSN  351 (363)
Q Consensus       312 ~~l~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~c~  351 (363)
                      +++    ++|++++|..+ ...+..+..+++|+.|++++|.
T Consensus       222 ~~L----~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          222 PNL----VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             TTC----SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             CCC----CEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            665    99999999843 3446678899999999999996

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.50  E-value=2e-14  Score=117.33  Aligned_cols=130  Identities=23%  Similarity=0.242  Sum_probs=87.7

Q ss_pred             ccceEEEeeccccc--ccCCC-CCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccc-cCccccCCCCCCEE
Q 017975          162 EGVKRISLMENEIQ--SLPQI-PTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE-LPVGISSLVSLHHL  237 (363)
Q Consensus       162 ~~l~~L~l~~~~~~--~l~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~-lp~~i~~L~~L~~L  237 (363)
                      ++++.|++++|.++  .+|.. ..+++|++|++++|.++.+ . .+..+++|++|++++| .+.. +|..++.+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-S-NLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-S-SCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-h-hhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEE
Confidence            56777788777776  66653 6777778888887777766 2 3777777888888877 4444 66666667778888


Q ss_pred             EccCCCCCccc--hhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEec
Q 017975          238 DLSSTKVRGLP--QELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLR  300 (363)
Q Consensus       238 ~l~~~~l~~lP--~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~  300 (363)
                      ++++|.++.+|  ..+..++ |+.|+++.|.+..+|.      .....+..+++|+.|++.+|...
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~------~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND------YRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT------HHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH------HHHHHHHhCccCcEecCCCCChh
Confidence            88877777765  5666666 7777777777666551      00014556666666666665543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.49  E-value=2.3e-13  Score=110.92  Aligned_cols=129  Identities=26%  Similarity=0.300  Sum_probs=111.2

Q ss_pred             ceeEEecCCCCC--CCccc-cccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccC
Q 017975          142 EKFLVRAGVGLT--DAPKI-EEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN  218 (363)
Q Consensus       142 ~~~~~~~~~~~~--~~~~~-~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~  218 (363)
                      -..+...+..+.  .++.. ..+++++.|++++|.++.++.+..+++|++|++++|.+...++..+.++++|++|++++|
T Consensus        26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  105 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN  105 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS
T ss_pred             CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC
Confidence            345666666665  55543 788999999999999999988899999999999999999855665788999999999999


Q ss_pred             CCccccC--ccccCCCCCCEEEccCCCCCccch----hhhccc-hhccccCcCccCcCCC
Q 017975          219 HYLTELP--VGISSLVSLHHLDLSSTKVRGLPQ----ELKALV-LRMLHCGSNHWPIAEE  271 (363)
Q Consensus       219 ~~~~~lp--~~i~~L~~L~~L~l~~~~l~~lP~----~i~~L~-L~~L~~~~~~l~~lp~  271 (363)
                       .++.+|  ..++.+++|++|++++|.+..+|.    .+..++ |+.|+++.|.+.++|.
T Consensus       106 -~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          106 -KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             -SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             -ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence             788876  789999999999999999999987    788888 9999999999888874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.47  E-value=5.4e-14  Score=112.30  Aligned_cols=125  Identities=25%  Similarity=0.239  Sum_probs=101.0

Q ss_pred             ccceEEEeeccccc--ccCC-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccc-cCccccCCCCCCEE
Q 017975          162 EGVKRISLMENEIQ--SLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE-LPVGISSLVSLHHL  237 (363)
Q Consensus       162 ~~l~~L~l~~~~~~--~l~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~-lp~~i~~L~~L~~L  237 (363)
                      ++++.|++++|.++  .+|. +..+++|++|++++|.++.+  ..++.+++|++|++++| .++. +|..++.+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEE
Confidence            68999999999988  6765 47889999999999998887  33889999999999999 5555 88777889999999


Q ss_pred             EccCCCCCccc--hhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceE
Q 017975          238 DLSSTKVRGLP--QELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLI  295 (363)
Q Consensus       238 ~l~~~~l~~lP--~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~  295 (363)
                      ++++|.++.+|  ..+..++ |+.|+++.|.++.+|.      .....+..+++|+.|++.
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND------YRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT------HHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH------HHHHHHHHCCCcccccCC
Confidence            99999999875  7788888 9999999998877761      001257777888877754

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.46  E-value=3.3e-13  Score=130.63  Aligned_cols=158  Identities=19%  Similarity=0.217  Sum_probs=126.7

Q ss_pred             ccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccC
Q 017975          162 EGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSS  241 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~  241 (363)
                      .+++.|++++|.++.+|... +++|++|++++|.++.+|    ..+++|++|++++| .++.+|. +++  +|++|++++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred             CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence            38999999999999988632 489999999999999887    45799999999999 7888997 776  999999999


Q ss_pred             CCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhhe
Q 017975          242 TKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQA  320 (363)
Q Consensus       242 ~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~  320 (363)
                      |.++.+|.   .+. |+.|++++|.++.+|          .   .+++|+.|++.+|.+.+ .+.  +.      ..|+.
T Consensus       130 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp----------~---~l~~L~~L~Ls~N~L~~-lp~--l~------~~L~~  184 (571)
T 3cvr_A          130 NQLTMLPE---LPALLEYINADNNQLTMLP----------E---LPTSLEVLSVRNNQLTF-LPE--LP------ESLEA  184 (571)
T ss_dssp             SCCSCCCC---CCTTCCEEECCSSCCSCCC----------C---CCTTCCEEECCSSCCSC-CCC--CC------TTCCE
T ss_pred             CcCCCCCC---cCccccEEeCCCCccCcCC----------C---cCCCcCEEECCCCCCCC-cch--hh------CCCCE
Confidence            99999998   466 999999999998887          2   46789999999998876 332  33      34599


Q ss_pred             eeecccCCCCcCCccccccccc-------ceeeeccCCCCCcccc
Q 017975          321 LHIKDCNSLPLNLLHLANMEHL-------QLFSIWDSNLEDWNVD  358 (363)
Q Consensus       321 L~l~~~~~~~~~~~~l~~l~~L-------~~L~l~~c~~l~~~~~  358 (363)
                      |++++|... ..+. +..  +|       +.|++++|.+.. +|+
T Consensus       185 L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~  224 (571)
T 3cvr_A          185 LDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPE  224 (571)
T ss_dssp             EECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCG
T ss_pred             EECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCH
Confidence            999998643 3233 443  66       999999998875 554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.45  E-value=1.9e-16  Score=153.85  Aligned_cols=107  Identities=19%  Similarity=0.245  Sum_probs=73.3

Q ss_pred             CCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCC
Q 017975          233 SLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKF  311 (363)
Q Consensus       233 ~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l  311 (363)
                      .|++|++++|.++.+|. ++.+. |+.|+++.|.++.+|          ..++.+++|+.|++++|.+.+. |  .+..+
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp----------~~~~~l~~L~~L~Ls~N~l~~l-p--~l~~l  507 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALP----------PALAALRCLEVLQASDNALENV-D--GVANL  507 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCC----------GGGGGCTTCCEEECCSSCCCCC-G--GGTTC
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccc----------hhhhcCCCCCEEECCCCCCCCC-c--ccCCC
Confidence            46777777777777775 77777 777777777776666          5677777777777777776652 2  45666


Q ss_pred             CchhhhhheeeecccCCCCcC-CcccccccccceeeeccCCCCCccc
Q 017975          312 PKLQNITQALHIKDCNSLPLN-LLHLANMEHLQLFSIWDSNLEDWNV  357 (363)
Q Consensus       312 ~~l~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~c~~l~~~~  357 (363)
                      ++|    +.|++++|...... +..+..+++|+.|++++|++...+|
T Consensus       508 ~~L----~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          508 PRL----QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             SSC----CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCC----cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            665    77777776543332 5567777777777777777665544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.45  E-value=1.5e-14  Score=144.55  Aligned_cols=149  Identities=21%  Similarity=0.128  Sum_probs=107.3

Q ss_pred             CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhc
Q 017975          180 IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRM  258 (363)
Q Consensus       180 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~  258 (363)
                      +..+++|+.|++++|.+..+++. +.++++|++|+|++| .++.+|..++.|++|++|+|++|.++.+|.+++.|. |+.
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY  297 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred             hccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence            56788899999999999888877 558999999999999 677899889999999999999999999999999988 999


Q ss_pred             cccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCccccc
Q 017975          259 LHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLAN  338 (363)
Q Consensus       259 L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~  338 (363)
                      |+++.|.++.+|          ..++.+++|+.|++.+|.+.+..+ ..+...   ......+++++|......      
T Consensus       298 L~L~~N~l~~lp----------~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~---~~~~~~l~l~~N~l~~~~------  357 (727)
T 4b8c_D          298 FYFFDNMVTTLP----------WEFGNLCNLQFLGVEGNPLEKQFL-KILTEK---SVTGLIFYLRDNRPEIPL------  357 (727)
T ss_dssp             EECCSSCCCCCC----------SSTTSCTTCCCEECTTSCCCSHHH-HHHHHH---HHHHHHHHHHHCCCCCCC------
T ss_pred             EECCCCCCCccC----------hhhhcCCCccEEeCCCCccCCCCh-HHHhhc---chhhhHHhhccCcccCcC------
Confidence            999999888877          568888999999999998876544 222221   111234677776543222      


Q ss_pred             ccccceeeeccC
Q 017975          339 MEHLQLFSIWDS  350 (363)
Q Consensus       339 l~~L~~L~l~~c  350 (363)
                      +..|+.|++++|
T Consensus       358 p~~l~~l~l~~n  369 (727)
T 4b8c_D          358 PHERRFIEINTD  369 (727)
T ss_dssp             CCC---------
T ss_pred             ccccceeEeecc
Confidence            235566666666

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.44  E-value=2e-14  Score=143.71  Aligned_cols=174  Identities=20%  Similarity=0.161  Sum_probs=114.6

Q ss_pred             ccccccceEEEeecccccccC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCE
Q 017975          158 IEEWEGVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHH  236 (363)
Q Consensus       158 ~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~  236 (363)
                      +..+..++.|++++|.+..+| .+..+++|++|+|++|.++.+|+. ++++++|++|+|++| .++.+|..++.|++|++
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKY  297 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSE
T ss_pred             hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCC-cCCccChhhcCCCCCCE
Confidence            456688999999999999887 467899999999999999988876 899999999999999 67799999999999999


Q ss_pred             EEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhcc-ccccceEEEEeccCcccccccCCCch
Q 017975          237 LDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHC-LEQLNLIALSLRGSRGVENFLKFPKL  314 (363)
Q Consensus       237 L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~~l  314 (363)
                      |+|++|.+..+|.+++.|. |+.|+++.|.+...+         |..+..+.. +..|++.+|.+.+..+ .      . 
T Consensus       298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~---------p~~~~~~~~~~~~l~l~~N~l~~~~p-~------~-  360 (727)
T 4b8c_D          298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF---------LKILTEKSVTGLIFYLRDNRPEIPLP-H------E-  360 (727)
T ss_dssp             EECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHH---------HHHHHHHHHHHHHHHHHHCCCCCCCC-C------C-
T ss_pred             EECCCCCCCccChhhhcCCCccEEeCCCCccCCCC---------hHHHhhcchhhhHHhhccCcccCcCc-c------c-
Confidence            9999999999999999999 999999999987543         244444332 2346677777765544 2      1 


Q ss_pred             hhhhheeeecccCC-------CCcC-CcccccccccceeeeccCCCC
Q 017975          315 QNITQALHIKDCNS-------LPLN-LLHLANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       315 ~~~L~~L~l~~~~~-------~~~~-~~~l~~l~~L~~L~l~~c~~l  353 (363)
                         ++.|+++.+..       ++.. ...+.++..+....++.|-..
T Consensus       361 ---l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          361 ---RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             --------------------------------------------CCC
T ss_pred             ---cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence               25555655421       1111 122344555566666666653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.43  E-value=3.2e-13  Score=123.60  Aligned_cols=185  Identities=14%  Similarity=0.114  Sum_probs=131.5

Q ss_pred             eEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCc-cccCCCCCCE-EEccCC
Q 017975          165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHH-LDLSST  242 (363)
Q Consensus       165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~-L~l~~~  242 (363)
                      +.++.++++++++|.-. .++++.|++++|.++.++++.|.++++|++|+|++|...+.+|. .+.++++|++ +.+.+|
T Consensus        12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            46777888899888522 46899999999999999998899999999999999965666764 5788988876 566678


Q ss_pred             CCCccc-hhhhccc-hhccccCcCccCcCCCC---CCCCC------------Ccc-cchhhh-ccccccceEEEEeccCc
Q 017975          243 KVRGLP-QELKALV-LRMLHCGSNHWPIAEEG---NVLSD------------DAE-SLMKEI-HCLEQLNLIALSLRGSR  303 (363)
Q Consensus       243 ~l~~lP-~~i~~L~-L~~L~~~~~~l~~lp~~---~l~~l------------~~~-~~l~~l-~~L~~L~l~~~~~~~~~  303 (363)
                      +++.+| ..+..++ |+.|++++|+++.+|..   ....+            .++ ..+..+ ..++.|++.+|.+....
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~  170 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH  170 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred             cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence            999985 4578888 99999999999988861   11111            111 122333 35677777777765432


Q ss_pred             ccccccCCCchhhhhheeeecccCCCCcCC-cccccccccceeeeccCCCCCcc
Q 017975          304 GVENFLKFPKLQNITQALHIKDCNSLPLNL-LHLANMEHLQLFSIWDSNLEDWN  356 (363)
Q Consensus       304 ~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~c~~l~~~  356 (363)
                      + . .....++    +.|++.+++.+...+ ..+..+++|++|++++|++....
T Consensus       171 ~-~-~f~~~~L----~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp  218 (350)
T 4ay9_X          171 N-S-AFNGTQL----DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  218 (350)
T ss_dssp             T-T-SSTTEEE----EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred             h-h-hccccch----hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence            2 2 2223333    788887766544433 35788888888888888765433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.43  E-value=1.8e-13  Score=114.23  Aligned_cols=129  Identities=21%  Similarity=0.317  Sum_probs=87.4

Q ss_pred             eEEEeecccccccCCCCCCCCccEEEeccCCccccchH-HhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCC
Q 017975          165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITES-FFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSST  242 (363)
Q Consensus       165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~  242 (363)
                      +.++++++.++.+|... ..++++|++++|.+..+++. .+..+++|++|+|++| .++.+ |..++.+++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC
Confidence            56677777777766521 23777777777777776653 3677777777777777 44443 667777777777777777


Q ss_pred             CCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcc
Q 017975          243 KVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRG  304 (363)
Q Consensus       243 ~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~  304 (363)
                      .++.+|.. +..+. |+.|+++.|.++.++         |..+..+++|+.|++.+|.+.+..+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVM---------PGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEEC---------TTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeC---------HHHhhcCCCCCEEEeCCCCccCcCc
Confidence            77776543 66666 777777777776553         2556667777777777777765543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=3.3e-13  Score=110.94  Aligned_cols=124  Identities=28%  Similarity=0.288  Sum_probs=109.6

Q ss_pred             eeEEecCCCCCCCccccccc-cceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975          143 KFLVRAGVGLTDAPKIEEWE-GVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL  221 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~-~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~  221 (363)
                      ..+...+..+..++.+..+. +++.|++++|.++.++.+..+++|++|++++|.++.+++..+..+++|++|++++| .+
T Consensus        22 ~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i  100 (176)
T 1a9n_A           22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SL  100 (176)
T ss_dssp             EEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CC
T ss_pred             eEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cC
Confidence            45667777777777777666 99999999999999988999999999999999999998886799999999999999 78


Q ss_pred             cccCc--cccCCCCCCEEEccCCCCCccchh----hhccc-hhccccCcCccC
Q 017975          222 TELPV--GISSLVSLHHLDLSSTKVRGLPQE----LKALV-LRMLHCGSNHWP  267 (363)
Q Consensus       222 ~~lp~--~i~~L~~L~~L~l~~~~l~~lP~~----i~~L~-L~~L~~~~~~l~  267 (363)
                      +.+|.  .++.+++|++|++++|.+..+|..    +..++ |+.|+++.|...
T Consensus       101 ~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          101 VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            88887  899999999999999999999885    78888 999888877643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.42  E-value=2.8e-13  Score=131.55  Aligned_cols=107  Identities=23%  Similarity=0.236  Sum_probs=74.9

Q ss_pred             CccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCc
Q 017975          185 RLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGS  263 (363)
Q Consensus       185 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~  263 (363)
                      .|++|++++|.++.+|.  ++.+++|++|+|++| .++.+|..++.+++|++|+|++|.++.+| .++.++ |+.|++++
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence            46777777777777654  677777777777777 56677777777777777777777777777 677777 77777777


Q ss_pred             CccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCc
Q 017975          264 NHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSR  303 (363)
Q Consensus       264 ~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~  303 (363)
                      |.++.++        .|..+..+++|+.|++.+|.+.+..
T Consensus       518 N~l~~~~--------~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          518 NRLQQSA--------AIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             SCCCSSS--------TTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCCCC--------CcHHHhcCCCCCEEEecCCcCCCCc
Confidence            7766651        1256677777777777777766543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.40  E-value=5.4e-13  Score=109.70  Aligned_cols=129  Identities=24%  Similarity=0.339  Sum_probs=91.7

Q ss_pred             ceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcc-ccCCCCCCEEEccCC
Q 017975          164 VKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSST  242 (363)
Q Consensus       164 l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~  242 (363)
                      .+.+++.++.++.+|. ...++|+.|++++|.++.+++..+..+++|++|++++| .++.+|.. ++.+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC
Confidence            3566777777777663 23367888888888877777766777888888888888 56666544 577888888888888


Q ss_pred             CCCccchh-hhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCc
Q 017975          243 KVRGLPQE-LKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSR  303 (363)
Q Consensus       243 ~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~  303 (363)
                      .++.+|.. +..+. |+.|+++.|.++.+|.         ..+..+++|+.|++.+|.+.+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---------~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPD---------GIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---------TTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCH---------HHhcCCcccCEEEecCCCeeccC
Confidence            88877664 46666 7888888887777663         34566777888888777766543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.40  E-value=7.4e-13  Score=110.53  Aligned_cols=127  Identities=21%  Similarity=0.316  Sum_probs=93.8

Q ss_pred             eEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEccCCC
Q 017975          165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTK  243 (363)
Q Consensus       165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~  243 (363)
                      +.++++++.++.+|.. -.++|++|++++|.++.+|.. +.++++|++|++++| .++.++ ..+..+++|++|++++|.
T Consensus        13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence            4577777777777742 235788888888888877744 788888888888888 555554 457888888888888888


Q ss_pred             CCccch-hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCc
Q 017975          244 VRGLPQ-ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSR  303 (363)
Q Consensus       244 l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~  303 (363)
                      ++.+|. .+..+. |+.|+++.|.++.+|.         ..+..+++|+.|++.+|.+....
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~---------~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPE---------GAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCT---------TTTTTCTTCCEEECCSSCEECSG
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeCh---------hhhhcCccccEEEeCCCCeecCC
Confidence            888764 577777 8888888888877763         35667788888888888776543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.39  E-value=1.3e-12  Score=104.09  Aligned_cols=120  Identities=27%  Similarity=0.305  Sum_probs=100.3

Q ss_pred             ceeEEecCCCCC--CCcc-ccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccC
Q 017975          142 EKFLVRAGVGLT--DAPK-IEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN  218 (363)
Q Consensus       142 ~~~~~~~~~~~~--~~~~-~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~  218 (363)
                      -..+...+..+.  .++. +..+++++.|++++|.++.++.+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus        19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N   98 (149)
T 2je0_A           19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN   98 (149)
T ss_dssp             CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred             CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence            345666666665  4443 4678999999999999999988899999999999999999855665888999999999999


Q ss_pred             CCccccC--ccccCCCCCCEEEccCCCCCccch----hhhccc-hhccccC
Q 017975          219 HYLTELP--VGISSLVSLHHLDLSSTKVRGLPQ----ELKALV-LRMLHCG  262 (363)
Q Consensus       219 ~~~~~lp--~~i~~L~~L~~L~l~~~~l~~lP~----~i~~L~-L~~L~~~  262 (363)
                       .++.+|  ..++.+++|++|++++|.++.+|.    .+..++ |+.|+++
T Consensus        99 -~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           99 -KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             -CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             -cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence             677765  789999999999999999999876    577777 8877654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.39  E-value=1.2e-14  Score=134.81  Aligned_cols=188  Identities=20%  Similarity=0.209  Sum_probs=117.4

Q ss_pred             ccccceEEEeecccccc-----cC-CCCCCCCccEEEeccCCccccchHH----hcCC---------CCCCEEEcccCCC
Q 017975          160 EWEGVKRISLMENEIQS-----LP-QIPTCPRLQTLLLEYNHIEEITESF----FQSL---------PSLRVLNLSVNHY  220 (363)
Q Consensus       160 ~~~~l~~L~l~~~~~~~-----l~-~~~~l~~L~~L~l~~~~l~~~~~~~----~~~l---------~~L~~L~L~~~~~  220 (363)
                      .++++++|++++|.+..     ++ .+..+++|++|++++|.+....+..    +..+         ++|++|++++| .
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~  170 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-R  170 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-C
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-C
Confidence            44677777777777665     22 2456677777777777765433222    2233         77777777777 3


Q ss_pred             cc--ccC---ccccCCCCCCEEEccCCCCCc------cchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhcc
Q 017975          221 LT--ELP---VGISSLVSLHHLDLSSTKVRG------LPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHC  288 (363)
Q Consensus       221 ~~--~lp---~~i~~L~~L~~L~l~~~~l~~------lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~  288 (363)
                      ++  .+|   ..+..+++|++|++++|.+..      +|..+..++ |+.|+++.|.++..-     ...+|..+..+++
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-----~~~l~~~l~~~~~  245 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-----SSALAIALKSWPN  245 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-----HHHHHHHGGGCTT
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-----HHHHHHHHccCCC
Confidence            43  334   456667777777777777762      333566666 777777777652100     0012356778888


Q ss_pred             ccccceEEEEeccCcc---cccc--cCCCchhhhhheeeecccCCCC----cCCccc-ccccccceeeeccCCCCCccc
Q 017975          289 LEQLNLIALSLRGSRG---VENF--LKFPKLQNITQALHIKDCNSLP----LNLLHL-ANMEHLQLFSIWDSNLEDWNV  357 (363)
Q Consensus       289 L~~L~l~~~~~~~~~~---~~~l--~~l~~l~~~L~~L~l~~~~~~~----~~~~~l-~~l~~L~~L~l~~c~~l~~~~  357 (363)
                      |+.|++.+|.+.+...   ...+  ..++++    ++|++++|....    ..+..+ .++++|+.|++++|++....+
T Consensus       246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L----~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          246 LRELGLNDCLLSARGAAAVVDAFSKLENIGL----QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CCEEECTTCCCCHHHHHHHHHHHHTCSSCCC----CEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             cCEEECCCCCCchhhHHHHHHHHhhccCCCe----EEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            8899888887764311   1222  224555    889999887433    234445 568899999999998876553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.38  E-value=1.7e-12  Score=108.27  Aligned_cols=123  Identities=23%  Similarity=0.314  Sum_probs=104.4

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCC---CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCC
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ---IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNH  219 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~---~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~  219 (363)
                      ..+...+..+..+|... ..+++.|++++|.++.++.   +..+++|++|++++|.++.+++..|.++++|++|+|++| 
T Consensus        11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-
T ss_pred             CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-
Confidence            35666777777777522 2489999999999998874   789999999999999999998777999999999999999 


Q ss_pred             CccccC-ccccCCCCCCEEEccCCCCCcc-chhhhccc-hhccccCcCccC
Q 017975          220 YLTELP-VGISSLVSLHHLDLSSTKVRGL-PQELKALV-LRMLHCGSNHWP  267 (363)
Q Consensus       220 ~~~~lp-~~i~~L~~L~~L~l~~~~l~~l-P~~i~~L~-L~~L~~~~~~l~  267 (363)
                      .++.+| ..++.+++|++|++++|.++.+ |..+..+. |+.|+++.|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            566654 4589999999999999999986 67888888 999999999865

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.37  E-value=2.9e-12  Score=106.91  Aligned_cols=123  Identities=25%  Similarity=0.319  Sum_probs=105.3

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL  221 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~  221 (363)
                      ..+.+.+..++.+|.. -.++++.|++++|.++.+| .+..+++|++|++++|.++.+++..|.++++|++|+|++| .+
T Consensus        13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred             CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-cc
Confidence            3566777777777753 2368999999999999987 5788999999999999999999888999999999999999 56


Q ss_pred             cccC-ccccCCCCCCEEEccCCCCCccchh-hhccc-hhccccCcCccC
Q 017975          222 TELP-VGISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWP  267 (363)
Q Consensus       222 ~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l~  267 (363)
                      +.+| ..++.+++|++|++++|.++.+|.. +..+. |+.|+++.|.+.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            6665 5799999999999999999999875 67788 999999988753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.35  E-value=5.1e-12  Score=103.78  Aligned_cols=123  Identities=28%  Similarity=0.481  Sum_probs=103.3

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL  221 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~  221 (363)
                      .+...+..+..+|. ...++++.|++++|.++.++.  +..+++|++|++++|.++.+++..+..+++|++|++++| .+
T Consensus        11 ~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l   88 (177)
T 2o6r_A           11 EIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KL   88 (177)
T ss_dssp             EEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred             EEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-Cc
Confidence            34556666666663 234789999999999998874  678999999999999999999887899999999999999 67


Q ss_pred             cccCcc-ccCCCCCCEEEccCCCCCccchhh-hccc-hhccccCcCccCc
Q 017975          222 TELPVG-ISSLVSLHHLDLSSTKVRGLPQEL-KALV-LRMLHCGSNHWPI  268 (363)
Q Consensus       222 ~~lp~~-i~~L~~L~~L~l~~~~l~~lP~~i-~~L~-L~~L~~~~~~l~~  268 (363)
                      +.+|.. ++.+++|++|++++|.++.+|..+ ..+. |+.|+++.|.+..
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            777654 689999999999999999998865 6687 9999999988653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.35  E-value=1.1e-14  Score=122.22  Aligned_cols=139  Identities=14%  Similarity=0.178  Sum_probs=92.4

Q ss_pred             CccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCC
Q 017975          195 HIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGN  273 (363)
Q Consensus       195 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~  273 (363)
                      .++.++.. +..+++|++|++++| .++.+| .++.+++|++|++++|.++.+|..+..++ |+.|++++|.++.+|   
T Consensus        36 ~l~~l~~~-~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~---  109 (198)
T 1ds9_A           36 PIEKMDAT-LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS---  109 (198)
T ss_dssp             TCCCCHHH-HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH---
T ss_pred             cHhhhhHH-HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC---
Confidence            34444443 677777777777777 566677 77777777777777777777777666666 777777777766543   


Q ss_pred             CCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCC----------cccccccccc
Q 017975          274 VLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNL----------LHLANMEHLQ  343 (363)
Q Consensus       274 l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~----------~~l~~l~~L~  343 (363)
                              .+..+++|+.|++.+|.+.+......+..++++    ++|++++|......+          ..+..+++|+
T Consensus       110 --------~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L----~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~  177 (198)
T 1ds9_A          110 --------GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL----EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             --------HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTC----SEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred             --------ccccCCCCCEEECCCCcCCchhHHHHHhcCCCC----CEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence                    466777888888888877654333445666665    888888775321111          1267788888


Q ss_pred             eeeeccCCCC
Q 017975          344 LFSIWDSNLE  353 (363)
Q Consensus       344 ~L~l~~c~~l  353 (363)
                      .|+  +++..
T Consensus       178 ~Ld--~~~i~  185 (198)
T 1ds9_A          178 KLD--GMPVD  185 (198)
T ss_dssp             EEC--CGGGT
T ss_pred             EEC--CcccC
Confidence            887  55544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.34  E-value=1.2e-13  Score=128.02  Aligned_cols=185  Identities=15%  Similarity=0.151  Sum_probs=104.7

Q ss_pred             ccccceEEEeecccccccC-----C-------CCCCCCccEEEeccCCccc----cchHHhcCCCCCCEEEcccCCCcc-
Q 017975          160 EWEGVKRISLMENEIQSLP-----Q-------IPTCPRLQTLLLEYNHIEE----ITESFFQSLPSLRVLNLSVNHYLT-  222 (363)
Q Consensus       160 ~~~~l~~L~l~~~~~~~l~-----~-------~~~l~~L~~L~l~~~~l~~----~~~~~~~~l~~L~~L~L~~~~~~~-  222 (363)
                      .++++++|++++|.+..+.     .       +..+++|++|++++|.+..    ..+..+..+++|++|+|++| .++ 
T Consensus        58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~  136 (386)
T 2ca6_A           58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGP  136 (386)
T ss_dssp             TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHH
T ss_pred             hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCH
Confidence            3456666666665443321     1       2456666666666666655    22233566666666666666 332 


Q ss_pred             ----ccCccccCC---------CCCCEEEccCCCCC--ccc---hhhhccc-hhccccCcCccCcCCCCCCCCCCcccch
Q 017975          223 ----ELPVGISSL---------VSLHHLDLSSTKVR--GLP---QELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLM  283 (363)
Q Consensus       223 ----~lp~~i~~L---------~~L~~L~l~~~~l~--~lP---~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l  283 (363)
                          .++..+..+         ++|++|++++|.+.  .+|   ..+..++ |+.|+++.|++...-    ..-..+..+
T Consensus       137 ~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g----~~~l~~~~l  212 (386)
T 2ca6_A          137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG----IEHLLLEGL  212 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHH----HHHHHHTTG
T ss_pred             HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhH----HHHHHHHHh
Confidence                122233333         66666666666665  234   3444555 666666666554100    000011266


Q ss_pred             hhhccccccceEEEEecc----CcccccccCCCchhhhhheeeecccCCCCc----CCccc--ccccccceeeeccCCCC
Q 017975          284 KEIHCLEQLNLIALSLRG----SRGVENFLKFPKLQNITQALHIKDCNSLPL----NLLHL--ANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       284 ~~l~~L~~L~l~~~~~~~----~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~----~~~~l--~~l~~L~~L~l~~c~~l  353 (363)
                      ..+++|+.|++.+|.+..    ..+ ..+..++++    ++|++++|.....    .+..+  ..+++|+.|++++|.+.
T Consensus       213 ~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l~~~~~L----~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          213 AYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNL----RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             GGCTTCCEEECCSSCCHHHHHHHHH-HHGGGCTTC----CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             hcCCCccEEECcCCCCCcHHHHHHH-HHHccCCCc----CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence            778888888888887752    222 344555555    8899998874211    12344  33888999999999877


Q ss_pred             C
Q 017975          354 D  354 (363)
Q Consensus       354 ~  354 (363)
                      .
T Consensus       288 ~  288 (386)
T 2ca6_A          288 L  288 (386)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.32  E-value=2.4e-13  Score=124.98  Aligned_cols=187  Identities=18%  Similarity=0.170  Sum_probs=120.6

Q ss_pred             ccceEEEeecccccccCC------CCCC-CCccEEEeccCCccccchHHh----cC-CCCCCEEEcccCCCcc-----cc
Q 017975          162 EGVKRISLMENEIQSLPQ------IPTC-PRLQTLLLEYNHIEEITESFF----QS-LPSLRVLNLSVNHYLT-----EL  224 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~~------~~~l-~~L~~L~l~~~~l~~~~~~~~----~~-l~~L~~L~L~~~~~~~-----~l  224 (363)
                      ++++.|++++|.++..+.      +..+ ++|++|++++|.++..+...+    .. .++|++|++++| .++     .+
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l  158 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDEL  158 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHH
Confidence            678888888888775432      3344 788888888888877665433    33 258888888888 454     45


Q ss_pred             CccccCCC-CCCEEEccCCCCCccc-hhhh----cc-c-hhccccCcCccCcCCCCCCCCCCcccchhhh-ccccccceE
Q 017975          225 PVGISSLV-SLHHLDLSSTKVRGLP-QELK----AL-V-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEI-HCLEQLNLI  295 (363)
Q Consensus       225 p~~i~~L~-~L~~L~l~~~~l~~lP-~~i~----~L-~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l-~~L~~L~l~  295 (363)
                      +..+..++ +|++|++++|.+...+ ..+.    .. . |+.|+++.|.+.....     ...+..+..+ ++|+.|++.
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~-----~~l~~~l~~~~~~L~~L~Ls  233 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY-----AELAYIFSSIPNHVVSLNLC  233 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-----HHHHHHHHHSCTTCCEEECC
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH-----HHHHHHHhcCCCCceEEECc
Confidence            55556665 8888888888887643 3333    33 3 8888888887765110     0122445553 489999999


Q ss_pred             EEEeccCcccccccCCCchhhhhheeeecccCC-------CCcCCcccccccccceeeeccCCCCCc
Q 017975          296 ALSLRGSRGVENFLKFPKLQNITQALHIKDCNS-------LPLNLLHLANMEHLQLFSIWDSNLEDW  355 (363)
Q Consensus       296 ~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~-------~~~~~~~l~~l~~L~~L~l~~c~~l~~  355 (363)
                      +|.+.+... ..+..+..-...|+.|++++|..       .......+.++++|+.|++++|++...
T Consensus       234 ~N~l~~~~~-~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          234 LNCLHGPSL-ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             SSCCCCCCH-HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCCCCcHHH-HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            988765432 22222211122249999999861       122234577888999999999987655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.28  E-value=1.2e-11  Score=101.27  Aligned_cols=104  Identities=25%  Similarity=0.395  Sum_probs=74.2

Q ss_pred             eEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcc-ccCCCCCCEEEccCCC
Q 017975          165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTK  243 (363)
Q Consensus       165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~  243 (363)
                      +.++++++.++.+|.-. .++|++|++++|.++.+++..|.++++|++|+|++| .++.+|.. +..+++|++|+|++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence            56777777777776522 267777888888777776666777778888888877 66666655 4677778888888777


Q ss_pred             CCccchh-hhccc-hhccccCcCccCcCC
Q 017975          244 VRGLPQE-LKALV-LRMLHCGSNHWPIAE  270 (363)
Q Consensus       244 l~~lP~~-i~~L~-L~~L~~~~~~l~~lp  270 (363)
                      ++.+|.. +..+. |+.|+++.|.+...+
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             cceeCHHHhccccCCCEEEeCCCCccccc
Confidence            7777765 66676 777777777765444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.26  E-value=2.2e-11  Score=99.69  Aligned_cols=111  Identities=24%  Similarity=0.301  Sum_probs=95.8

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      ..+...+..+..+|... .++++.|++++|.++.++.  +..+++|++|++++|.++.+++..|.++++|++|+|++| .
T Consensus        15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-H   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-c
Confidence            45667777777777532 3789999999999999853  789999999999999999999987899999999999999 7


Q ss_pred             ccccCcc-ccCCCCCCEEEccCCCCCccchhhhccc
Q 017975          221 LTELPVG-ISSLVSLHHLDLSSTKVRGLPQELKALV  255 (363)
Q Consensus       221 ~~~lp~~-i~~L~~L~~L~l~~~~l~~lP~~i~~L~  255 (363)
                      ++.+|.. +..+++|++|++++|.+...|..+..+.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~  128 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR  128 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcccccccHHHHH
Confidence            8888875 8999999999999999998887776655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.25  E-value=1.8e-11  Score=99.83  Aligned_cols=102  Identities=26%  Similarity=0.407  Sum_probs=68.1

Q ss_pred             ceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCcc-ccCCCCCCEEEccCC
Q 017975          164 VKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSST  242 (363)
Q Consensus       164 l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~  242 (363)
                      .+.++++++.++.+|.-. .++|++|++++|.++.+++..|.++++|++|+|++| .++.+|.. +..+++|++|+|++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence            356677777777766422 366777777777777776666777777777777777 55565544 467777777777777


Q ss_pred             CCCccchh-hhccc-hhccccCcCccC
Q 017975          243 KVRGLPQE-LKALV-LRMLHCGSNHWP  267 (363)
Q Consensus       243 ~l~~lP~~-i~~L~-L~~L~~~~~~l~  267 (363)
                      .++.+|.. +..+. |+.|+++.|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            77777653 55666 666666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.24  E-value=7.6e-13  Score=121.63  Aligned_cols=189  Identities=19%  Similarity=0.230  Sum_probs=131.0

Q ss_pred             ccceEEEeecccccccCC------CCCCC-CccEEEeccCCccccchHHhcCC-----CCCCEEEcccCCCcccc-Ccc-
Q 017975          162 EGVKRISLMENEIQSLPQ------IPTCP-RLQTLLLEYNHIEEITESFFQSL-----PSLRVLNLSVNHYLTEL-PVG-  227 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~~------~~~l~-~L~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~L~~~~~~~~l-p~~-  227 (363)
                      +++++|++++|.+...+.      +..++ +|++|++++|.+....+..+..+     ++|++|++++| .++.. +.. 
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l  100 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDEL  100 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHHH
Confidence            459999999999988652      56777 89999999999988766556654     99999999999 55543 333 


Q ss_pred             ---ccCC-CCCCEEEccCCCCCccch-hhh----cc-c-hhccccCcCccCcCCCCCCCCCCcccchhhhc-cccccceE
Q 017975          228 ---ISSL-VSLHHLDLSSTKVRGLPQ-ELK----AL-V-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIH-CLEQLNLI  295 (363)
Q Consensus       228 ---i~~L-~~L~~L~l~~~~l~~lP~-~i~----~L-~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~-~L~~L~l~  295 (363)
                         +..+ ++|++|++++|.+...+. .+.    .+ . |+.|+++.|.++....     ...+..+..++ +|+.|++.
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-----~~l~~~l~~~~~~L~~L~Ls  175 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS-----DELIQILAAIPANVNSLNLR  175 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH-----HHHHHHHHTSCTTCCEEECT
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH-----HHHHHHHhcCCccccEeeec
Confidence               4455 899999999999988654 332    32 3 9999999998763210     01123344454 89999999


Q ss_pred             EEEeccCcccccccCC-CchhhhhheeeecccCCCCc----CCccccc-ccccceeeeccCCCCCccc
Q 017975          296 ALSLRGSRGVENFLKF-PKLQNITQALHIKDCNSLPL----NLLHLAN-MEHLQLFSIWDSNLEDWNV  357 (363)
Q Consensus       296 ~~~~~~~~~~~~l~~l-~~l~~~L~~L~l~~~~~~~~----~~~~l~~-l~~L~~L~l~~c~~l~~~~  357 (363)
                      +|.+.+..+ ..+... ...+..|++|++++|.-...    .+..+.. .++|+.|++++|.+....+
T Consensus       176 ~n~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          176 GNNLASKNC-AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             TSCGGGSCH-HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             CCCCchhhH-HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            998875543 222221 11112459999999874221    2234544 4599999999999876544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.19  E-value=8.5e-11  Score=95.85  Aligned_cols=110  Identities=23%  Similarity=0.267  Sum_probs=92.6

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL  221 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~  221 (363)
                      .+...+..++.+|... .++++.|++++|.++.++.  +..+++|++|++++|.++.+++..|.++++|++|+|++| .+
T Consensus        13 ~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l   90 (170)
T 3g39_A           13 TVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QL   90 (170)
T ss_dssp             EEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred             EEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-cc
Confidence            4566777777777532 3789999999999999853  789999999999999999999988899999999999999 77


Q ss_pred             cccCc-cccCCCCCCEEEccCCCCCccchhhhccc
Q 017975          222 TELPV-GISSLVSLHHLDLSSTKVRGLPQELKALV  255 (363)
Q Consensus       222 ~~lp~-~i~~L~~L~~L~l~~~~l~~lP~~i~~L~  255 (363)
                      +.+|. .+..+++|++|++++|.+...+..+..+.
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~  125 (170)
T 3g39_A           91 KSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLS  125 (170)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHH
T ss_pred             CEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHH
Confidence            77776 48999999999999999887766554443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.17  E-value=1e-12  Score=124.59  Aligned_cols=193  Identities=19%  Similarity=0.165  Sum_probs=102.8

Q ss_pred             cccceEEEeecccccccC--CC-----CCCCCccEEEeccCCcccc----chHHhcCCCCCCEEEcccCCCcccc-----
Q 017975          161 WEGVKRISLMENEIQSLP--QI-----PTCPRLQTLLLEYNHIEEI----TESFFQSLPSLRVLNLSVNHYLTEL-----  224 (363)
Q Consensus       161 ~~~l~~L~l~~~~~~~l~--~~-----~~l~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~~~~~~~l-----  224 (363)
                      ++++++|++++|.+....  .+     ...++|++|++++|.++..    .+..+..+++|++|++++| .++..     
T Consensus       169 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l  247 (461)
T 1z7x_W          169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAEL  247 (461)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHH
T ss_pred             CCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHH
Confidence            456666666666554321  11     1234566666666655542    1222455556666666655 33221     


Q ss_pred             -CccccCCCCCCEEEccCCCCCc-----cchhhhccc-hhccccCcCccCcCCC-----------CCCCCC---------
Q 017975          225 -PVGISSLVSLHHLDLSSTKVRG-----LPQELKALV-LRMLHCGSNHWPIAEE-----------GNVLSD---------  277 (363)
Q Consensus       225 -p~~i~~L~~L~~L~l~~~~l~~-----lP~~i~~L~-L~~L~~~~~~l~~lp~-----------~~l~~l---------  277 (363)
                       +.....+++|++|++++|.++.     +|..+..++ |+.|+++.|.+.....           .++..+         
T Consensus       248 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  327 (461)
T 1z7x_W          248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA  327 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence             1112235556666666655554     455555455 5555555555431100           011111         


Q ss_pred             ----CcccchhhhccccccceEEEEeccCcccccccC-CCchhhhhheeeecccCCCC----cCCcccccccccceeeec
Q 017975          278 ----DAESLMKEIHCLEQLNLIALSLRGSRGVENFLK-FPKLQNITQALHIKDCNSLP----LNLLHLANMEHLQLFSIW  348 (363)
Q Consensus       278 ----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-l~~l~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~  348 (363)
                          ..+..+..+++|+.|++.+|.+.+... ..+.. +......|++|++++|....    ..+..+..+++|+.|+++
T Consensus       328 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~  406 (461)
T 1z7x_W          328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGV-RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS  406 (461)
T ss_dssp             GGHHHHHHHHHHCSSCCEEECCSSBCHHHHH-HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred             HHHHHHHHHHhhCCCccEEEccCCccccccH-HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence                134556677899999998887654322 22221 11111235999999986432    335567788999999999


Q ss_pred             cCCCCCc
Q 017975          349 DSNLEDW  355 (363)
Q Consensus       349 ~c~~l~~  355 (363)
                      +|++...
T Consensus       407 ~N~i~~~  413 (461)
T 1z7x_W          407 NNCLGDA  413 (461)
T ss_dssp             SSSCCHH
T ss_pred             CCCCCHH
Confidence            9987643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.15  E-value=9.8e-13  Score=124.68  Aligned_cols=132  Identities=21%  Similarity=0.191  Sum_probs=62.6

Q ss_pred             cceEEEeecccccccC------CCCCCCCccEEEeccCCccccchHHhc-----CCCCCCEEEcccCCCccc-----cCc
Q 017975          163 GVKRISLMENEIQSLP------QIPTCPRLQTLLLEYNHIEEITESFFQ-----SLPSLRVLNLSVNHYLTE-----LPV  226 (363)
Q Consensus       163 ~l~~L~l~~~~~~~l~------~~~~l~~L~~L~l~~~~l~~~~~~~~~-----~l~~L~~L~L~~~~~~~~-----lp~  226 (363)
                      ++++|++++|.++...      .+..+++|++|++++|.+.......+.     ..++|++|++++| .++.     +|.
T Consensus       143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~  221 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCG  221 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHH
T ss_pred             cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHH
Confidence            4555555555444311      123345566666665554432222121     2445666666666 3332     345


Q ss_pred             cccCCCCCCEEEccCCCCCcc-----chhh-hccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEe
Q 017975          227 GISSLVSLHHLDLSSTKVRGL-----PQEL-KALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSL  299 (363)
Q Consensus       227 ~i~~L~~L~~L~l~~~~l~~l-----P~~i-~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~  299 (363)
                      .+..+++|++|++++|.+...     ++.+ ..+. |+.|+++.|.++....     ...+..+..+++|+.|++.+|.+
T Consensus       222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-----~~l~~~l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC-----GDLCRVLRAKESLKELSLAGNEL  296 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-----HHHHHHHHHCTTCCEEECTTCCC
T ss_pred             HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH-----HHHHHHHhhCCCcceEECCCCCC
Confidence            555556666666666655432     1221 1233 5555565555543100     00224445566666666666654


Q ss_pred             c
Q 017975          300 R  300 (363)
Q Consensus       300 ~  300 (363)
                      .
T Consensus       297 ~  297 (461)
T 1z7x_W          297 G  297 (461)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.15  E-value=3.6e-13  Score=112.92  Aligned_cols=111  Identities=25%  Similarity=0.295  Sum_probs=77.1

Q ss_pred             CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhc
Q 017975          180 IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRM  258 (363)
Q Consensus       180 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~  258 (363)
                      +..+++|++|++++|.++.++ . +.++++|++|++++| .++.+|..++.+++|++|++++|.++.+| .+..+. |+.
T Consensus        44 ~~~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~  119 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV  119 (198)
T ss_dssp             HHHTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred             HhcCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence            556677777777777777765 3 677777777777777 56677776666777777777777777776 566666 777


Q ss_pred             cccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccC
Q 017975          259 LHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGS  302 (363)
Q Consensus       259 L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~  302 (363)
                      |+++.|.++.+|        ....+..+++|+.|++.+|.+.+.
T Consensus       120 L~l~~N~i~~~~--------~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          120 LYMSNNKITNWG--------EIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEESEEECCCHH--------HHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             EECCCCcCCchh--------HHHHHhcCCCCCEEEecCCccccc
Confidence            777777766554        112466677777777777766544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.07  E-value=3e-10  Score=103.53  Aligned_cols=101  Identities=22%  Similarity=0.221  Sum_probs=65.7

Q ss_pred             EEecCC-CCCCCccccccccceEEEeec-ccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975          145 LVRAGV-GLTDAPKIEEWEGVKRISLME-NEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       145 ~~~~~~-~~~~~~~~~~~~~l~~L~l~~-~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      +.+.+. .++.+|.+..+.+++.|++++ |.++.++.  +..+++|+.|+|++|.++.+++..|.++++|++|+|++| .
T Consensus        13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~   91 (347)
T 2ifg_A           13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-A   91 (347)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-C
T ss_pred             EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-c
Confidence            344444 566666555556677777774 77766653  666777777777777777776666677777777777777 5


Q ss_pred             ccccCccccCCCCCCEEEccCCCCCc
Q 017975          221 LTELPVGISSLVSLHHLDLSSTKVRG  246 (363)
Q Consensus       221 ~~~lp~~i~~L~~L~~L~l~~~~l~~  246 (363)
                      ++.+|..+.....|++|+|.+|.+..
T Consensus        92 l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           92 LESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             cceeCHHHcccCCceEEEeeCCCccC
Confidence            66666554444447777777776664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.95  E-value=2.1e-09  Score=97.90  Aligned_cols=102  Identities=21%  Similarity=0.241  Sum_probs=88.3

Q ss_pred             EEEeecc-cccccCCCCCCCCccEEEecc-CCccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCC
Q 017975          166 RISLMEN-EIQSLPQIPTCPRLQTLLLEY-NHIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSST  242 (363)
Q Consensus       166 ~L~l~~~-~~~~l~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~  242 (363)
                      .++.+++ .++.+|.+..+++|+.|+|++ |.+..+++..|.++++|++|+|++| .++.+ |..|++|++|++|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence            4577777 899999888899999999996 9999999888999999999999999 56665 457899999999999999


Q ss_pred             CCCccchhhhcc-chhccccCcCccCc
Q 017975          243 KVRGLPQELKAL-VLRMLHCGSNHWPI  268 (363)
Q Consensus       243 ~l~~lP~~i~~L-~L~~L~~~~~~l~~  268 (363)
                      .++.+|..+... .|+.|++..|.+.-
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             ccceeCHHHcccCCceEEEeeCCCccC
Confidence            999998876544 48999999888764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.94  E-value=9.7e-10  Score=99.41  Aligned_cols=177  Identities=15%  Similarity=0.249  Sum_probs=102.7

Q ss_pred             cccceEEEeeccccc--------------------ccCC--CCC--------CCCccEEEeccCCccccchHHhcCCCCC
Q 017975          161 WEGVKRISLMENEIQ--------------------SLPQ--IPT--------CPRLQTLLLEYNHIEEITESFFQSLPSL  210 (363)
Q Consensus       161 ~~~l~~L~l~~~~~~--------------------~l~~--~~~--------l~~L~~L~l~~~~l~~~~~~~~~~l~~L  210 (363)
                      +++++.|++++|.+.                    .+|.  |..        +++|+.+++.. .++.+++..|.++++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            467888888888777                    2232  445        78888888888 7888888878888888


Q ss_pred             CEEEcccCCCcccc-CccccCCCCCCEEEccCCC------------------C---------Cccchhhh----------
Q 017975          211 RVLNLSVNHYLTEL-PVGISSLVSLHHLDLSSTK------------------V---------RGLPQELK----------  252 (363)
Q Consensus       211 ~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~------------------l---------~~lP~~i~----------  252 (363)
                      +.++++++ .+..+ +..+..+.++.++....+.                  +         ..+|..+.          
T Consensus       127 ~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~  205 (329)
T 3sb4_A          127 KICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN  205 (329)
T ss_dssp             CEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred             ceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence            88888888 33333 3344444444444433210                  0         00111100          


Q ss_pred             ------------------ccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCc
Q 017975          253 ------------------ALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPK  313 (363)
Q Consensus       253 ------------------~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~  313 (363)
                                        .+. |+.+++..|+++.+|.         ..+.++.+|+.+.+.++ + ..++...|..+.+
T Consensus       206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~---------~aF~~~~~L~~l~l~~n-i-~~I~~~aF~~~~~  274 (329)
T 3sb4_A          206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD---------FTFAQKKYLLKIKLPHN-L-KTIGQRVFSNCGR  274 (329)
T ss_dssp             EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT---------TTTTTCTTCCEEECCTT-C-CEECTTTTTTCTT
T ss_pred             eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH---------hhhhCCCCCCEEECCcc-c-ceehHHHhhCChh
Confidence                              123 6666666666666663         45666677777766654 2 2233355555555


Q ss_pred             hhhhhh-eeeecccCCCCcCCcccccccccceeeeccCCCCCc
Q 017975          314 LQNITQ-ALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDW  355 (363)
Q Consensus       314 l~~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~  355 (363)
                      |    + .+++.+ +-.......|.++++|+.++++++.....
T Consensus       275 L----~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I  312 (329)
T 3sb4_A          275 L----AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL  312 (329)
T ss_dssp             C----CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred             c----cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence            5    6 677765 22222335677777777777766655433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.87  E-value=2.5e-10  Score=111.55  Aligned_cols=16  Identities=13%  Similarity=0.447  Sum_probs=8.9

Q ss_pred             cccccceeeeccCCCC
Q 017975          338 NMEHLQLFSIWDSNLE  353 (363)
Q Consensus       338 ~l~~L~~L~l~~c~~l  353 (363)
                      .+++|+.|+++.+.+.
T Consensus       376 ~~~~L~~L~l~~~~l~  391 (592)
T 3ogk_B          376 GCQELEYMAVYVSDIT  391 (592)
T ss_dssp             HCTTCSEEEEEESCCC
T ss_pred             hCccCeEEEeecCCcc
Confidence            3566666666544443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.71  E-value=4.4e-09  Score=102.69  Aligned_cols=104  Identities=14%  Similarity=0.091  Sum_probs=49.8

Q ss_pred             cccceEEEeecccccccC-----C-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc---cccCccccCC
Q 017975          161 WEGVKRISLMENEIQSLP-----Q-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL---TELPVGISSL  231 (363)
Q Consensus       161 ~~~l~~L~l~~~~~~~l~-----~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~---~~lp~~i~~L  231 (363)
                      +++++.|++++|.++.+.     . +..+++|++|++++|.+..++.. +.++++|+.|++++....   ...+..++.+
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~  269 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFP  269 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH-HhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence            345555555555443211     1 23456666666666655554432 555555555555532111   1222334444


Q ss_pred             CCCCEEEccCCCCCccchhhhccc-hhccccCcCc
Q 017975          232 VSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNH  265 (363)
Q Consensus       232 ~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~  265 (363)
                      ++|+.|+++++....+|..+..++ |+.|+++.+.
T Consensus       270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred             ccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence            444444444444444555555555 5555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.69  E-value=7.4e-10  Score=108.19  Aligned_cols=81  Identities=20%  Similarity=0.286  Sum_probs=36.5

Q ss_pred             cccceEEEeecccccc-----cCCC-CCCCCccEEEeccCC--cc-ccchHHhcCCCCCCEEEcccCCCccccCccccCC
Q 017975          161 WEGVKRISLMENEIQS-----LPQI-PTCPRLQTLLLEYNH--IE-EITESFFQSLPSLRVLNLSVNHYLTELPVGISSL  231 (363)
Q Consensus       161 ~~~l~~L~l~~~~~~~-----l~~~-~~l~~L~~L~l~~~~--l~-~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L  231 (363)
                      ++++++|++++|.+..     ++.+ ..+++|++|++++|.  +. ......+.++++|++|++++|..+..+|..+..+
T Consensus       155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~  234 (594)
T 2p1m_B          155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA  234 (594)
T ss_dssp             CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred             CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence            4455555555554332     1111 244555555555553  11 0011112334555555555554444455555555


Q ss_pred             CCCCEEEccC
Q 017975          232 VSLHHLDLSS  241 (363)
Q Consensus       232 ~~L~~L~l~~  241 (363)
                      ++|++|++++
T Consensus       235 ~~L~~L~l~~  244 (594)
T 2p1m_B          235 PQLEELGTGG  244 (594)
T ss_dssp             TTCSEEECSB
T ss_pred             CcceEccccc
Confidence            5555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.67  E-value=2.3e-08  Score=90.31  Aligned_cols=182  Identities=13%  Similarity=0.092  Sum_probs=116.3

Q ss_pred             ccccceEEEeecccc-cccCCCCC-CCCccEEEeccCCcc--------------------ccchHHhcC--------CCC
Q 017975          160 EWEGVKRISLMENEI-QSLPQIPT-CPRLQTLLLEYNHIE--------------------EITESFFQS--------LPS  209 (363)
Q Consensus       160 ~~~~l~~L~l~~~~~-~~l~~~~~-l~~L~~L~l~~~~l~--------------------~~~~~~~~~--------l~~  209 (363)
                      .+.+++.|.+.++-- ..+..+.. +++|++|+|++|.+.                    .+++..|.+        +.+
T Consensus        23 ~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~  102 (329)
T 3sb4_A           23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT  102 (329)
T ss_dssp             HHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred             hhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence            457889999887411 11222223 789999999999888                    566677888        999


Q ss_pred             CCEEEcccCCCccccC-ccccCCCCCCEEEccCCCCCccchhh-hccc-hhccccCcC----ccCcCCC------CCCC-
Q 017975          210 LRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVRGLPQEL-KALV-LRMLHCGSN----HWPIAEE------GNVL-  275 (363)
Q Consensus       210 L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i-~~L~-L~~L~~~~~----~l~~lp~------~~l~-  275 (363)
                      |+.++|.+  .++.++ ..+.++.+|+.++++++.+..++... .... +..+..+.+    ....+..      .++. 
T Consensus       103 L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~  180 (329)
T 3sb4_A          103 LEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET  180 (329)
T ss_dssp             CCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred             CcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence            99999998  366665 45889999999999999888876543 2222 333322221    0011110      0000 


Q ss_pred             -------------------------CC---------CcccchhhhccccccceEEEEeccCcccccccCCCchhhhhhee
Q 017975          276 -------------------------SD---------DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQAL  321 (363)
Q Consensus       276 -------------------------~l---------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L  321 (363)
                                               .+         ........+++|+.+++.+|.+.. ++...|..+.+|    +.+
T Consensus       181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L----~~l  255 (329)
T 3sb4_A          181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-IPDFTFAQKKYL----LKI  255 (329)
T ss_dssp             EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-ECTTTTTTCTTC----CEE
T ss_pred             eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-ecHhhhhCCCCC----CEE
Confidence                                     00         000001136789999998877654 344667777777    999


Q ss_pred             eecccCCCCcCCcccccccccc-eeeecc
Q 017975          322 HIKDCNSLPLNLLHLANMEHLQ-LFSIWD  349 (363)
Q Consensus       322 ~l~~~~~~~~~~~~l~~l~~L~-~L~l~~  349 (363)
                      ++.++ -.......|.++++|+ .+++.+
T Consensus       256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred             ECCcc-cceehHHHhhCChhccEEEEEcc
Confidence            99885 2233345689999999 999987

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.62  E-value=3e-09  Score=103.89  Aligned_cols=66  Identities=21%  Similarity=0.219  Sum_probs=34.1

Q ss_pred             ccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcc-cccccccceeeeccC
Q 017975          280 ESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLH-LANMEHLQLFSIWDS  350 (363)
Q Consensus       280 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~c  350 (363)
                      +..+..+++|+.|++.+|.+........+..++++    ++|++++|-. ...+.. ...+++|+.|++++|
T Consensus       282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L----~~L~l~~~~~-~~~l~~l~~~~~~L~~L~L~~~  348 (594)
T 2p1m_B          282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKL----QRLWVLDYIE-DAGLEVLASTCKDLRELRVFPS  348 (594)
T ss_dssp             GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTC----CEEEEEGGGH-HHHHHHHHHHCTTCCEEEEECS
T ss_pred             HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCc----CEEeCcCccC-HHHHHHHHHhCCCCCEEEEecC
Confidence            33444667777777776664322211123344444    7777777621 111111 234677888887543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.48  E-value=1.4e-09  Score=99.93  Aligned_cols=157  Identities=13%  Similarity=0.121  Sum_probs=101.6

Q ss_pred             ccceEEEeecccccccC-----C-C-CCCCCccEEEeccCCccccc-hHHhcCCCCCCEEEcccCCCcccc-Cccc----
Q 017975          162 EGVKRISLMENEIQSLP-----Q-I-PTCPRLQTLLLEYNHIEEIT-ESFFQSLPSLRVLNLSVNHYLTEL-PVGI----  228 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~-----~-~-~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~L~~~~~~~~l-p~~i----  228 (363)
                      +.++.|++++|.+....     . + ...++|+.|++++|.+.... ......+++|++|+|++| .++.. ...+    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence            57999999999886532     1 1 23479999999999886432 222345678999999999 55432 2222    


Q ss_pred             -cCCCCCCEEEccCCCCCc-----cchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975          229 -SSLVSLHHLDLSSTKVRG-----LPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG  301 (363)
Q Consensus       229 -~~L~~L~~L~l~~~~l~~-----lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~  301 (363)
                       ...++|++|+|++|.+..     ++..+...+ |+.|++++|.+.....     ..++..+...++|+.|++.+|.+..
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~-----~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL-----ELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH-----HHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH-----HHHHHHHhcCCCcCeEECCCCCCCH
Confidence             346789999999999875     555556666 8899999888653210     0112345566788888888887654


Q ss_pred             Ccc---cccccCCCchhhhhheeeecccCC
Q 017975          302 SRG---VENFLKFPKLQNITQALHIKDCNS  328 (363)
Q Consensus       302 ~~~---~~~l~~l~~l~~~L~~L~l~~~~~  328 (363)
                      ...   ...+...+.    |++|++++|..
T Consensus       226 ~g~~~l~~~L~~~~~----L~~L~Ls~N~i  251 (372)
T 3un9_A          226 TAALALARAAREHPS----LELLHLYFNEL  251 (372)
T ss_dssp             HHHHHHHHHHHHCSS----CCEEECTTSSC
T ss_pred             HHHHHHHHHHHhCCC----CCEEeccCCCC
Confidence            221   011222233    48888888763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.31  E-value=3e-08  Score=91.04  Aligned_cols=38  Identities=34%  Similarity=0.346  Sum_probs=16.6

Q ss_pred             CCCCCEEEcccCCCccc-----cCccccCCCCCCEEEccCCCCC
Q 017975          207 LPSLRVLNLSVNHYLTE-----LPVGISSLVSLHHLDLSSTKVR  245 (363)
Q Consensus       207 l~~L~~L~L~~~~~~~~-----lp~~i~~L~~L~~L~l~~~~l~  245 (363)
                      .++|++|+|++| .++.     ++..+..+++|++|+|++|.+.
T Consensus       154 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          154 QCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             TCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             CCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence            344555555554 2221     2333344444555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.22  E-value=5.2e-06  Score=76.89  Aligned_cols=178  Identities=15%  Similarity=0.135  Sum_probs=86.8

Q ss_pred             cceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEc
Q 017975          163 GVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDL  239 (363)
Q Consensus       163 ~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l  239 (363)
                      +++.+.+.. .++.++  .|..+++|+.+++..|.++.++...|. ..+|+.+.+..+  ++.++ ..+.++.+|+.+++
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence            466666653 455544  356677777777777766666666555 366666666643  44433 34556666666666


Q ss_pred             cCCCCCccchhhhccc-hhccccCcCccCcCCC------CCCCCC--------------CcccchhhhccccccceEEEE
Q 017975          240 SSTKVRGLPQELKALV-LRMLHCGSNHWPIAEE------GNVLSD--------------DAESLMKEIHCLEQLNLIALS  298 (363)
Q Consensus       240 ~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~------~~l~~l--------------~~~~~l~~l~~L~~L~l~~~~  298 (363)
                      ..+ ++.++.....-. |+.+.+ .+.++.++.      .+|..+              -.+..+.++.+|+.+.+..+ 
T Consensus       234 ~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-  310 (401)
T 4fdw_A          234 PEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-  310 (401)
T ss_dssp             CTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-
T ss_pred             CCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-
Confidence            542 333332211112 333222 122222222      011100              01133455556666555421 


Q ss_pred             eccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975          299 LRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED  354 (363)
Q Consensus       299 ~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~  354 (363)
                      +. .++...|.++.+|    +.+.+.++ -.......|.++ +|+.+++.+|....
T Consensus       311 i~-~I~~~aF~~c~~L----~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          311 IR-ILGQGLLGGNRKV----TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             CC-EECTTTTTTCCSC----CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred             eE-EEhhhhhcCCCCc----cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence            11 2222344444554    66666442 112223456667 77888887775443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.08  E-value=1.1e-05  Score=74.67  Aligned_cols=178  Identities=13%  Similarity=0.158  Sum_probs=121.1

Q ss_pred             ccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 017975          162 EGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDL  239 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l  239 (363)
                      .+++.+.+..+ ++.++.  |.+ .+|+.+.+.. .++.+....|.++.+|+.+++++| .++.+|.......+|+.+.+
T Consensus       135 ~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~l  210 (401)
T 4fdw_A          135 SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLL  210 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEEC
T ss_pred             CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEe
Confidence            36888888755 666653  455 4799999986 788888888999999999999998 78888887777899999999


Q ss_pred             cCCCCCccch-hhhccc-hhccccCcCccCcCCC-----CCCCCCCcc--------cchhhhccccccceEEEEec----
Q 017975          240 SSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIAEE-----GNVLSDDAE--------SLMKEIHCLEQLNLIALSLR----  300 (363)
Q Consensus       240 ~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~-----~~l~~l~~~--------~~l~~l~~L~~L~l~~~~~~----  300 (363)
                      .. +++.++. .+..+. |+.+.+.. .++.++.     .++..+.+|        ..+.++++|+.+.+.++...    
T Consensus       211 p~-~l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~  288 (401)
T 4fdw_A          211 PV-TLKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPE  288 (401)
T ss_dssp             CT-TCCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTT
T ss_pred             CC-chheehhhHhhCCCCCCEEecCC-CccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcc
Confidence            84 4888865 455555 77766654 3555554     333333222        34556777887777665432    


Q ss_pred             cCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccC
Q 017975          301 GSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDS  350 (363)
Q Consensus       301 ~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c  350 (363)
                      ...+...|..+++|    +.+.+.+. -.......+.++++|+.+.+..+
T Consensus       289 ~~I~~~aF~~c~~L----~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          289 AMIHPYCLEGCPKL----ARFEIPES-IRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             CEECTTTTTTCTTC----CEECCCTT-CCEECTTTTTTCCSCCEEEECTT
T ss_pred             cEECHHHhhCCccC----CeEEeCCc-eEEEhhhhhcCCCCccEEEECcc
Confidence            11333556666666    77777742 22222346778888888888543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.00  E-value=5.8e-06  Score=75.32  Aligned_cols=136  Identities=13%  Similarity=0.117  Sum_probs=77.8

Q ss_pred             cccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHh--cCCCCCCEEEcccCCC-------ccccCccc-
Q 017975          159 EEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFF--QSLPSLRVLNLSVNHY-------LTELPVGI-  228 (363)
Q Consensus       159 ~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~--~~l~~L~~L~L~~~~~-------~~~lp~~i-  228 (363)
                      ..+++|+.|.+.++.-..++.+ .+++|+.|++..+.+..-....+  ..+++|+.|+|+.+..       +..+...+ 
T Consensus       169 ~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~  247 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS  247 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred             hcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence            3457888888887732344443 37888888888877653222223  3688888888863211       11121122 


Q ss_pred             -cCCCCCCEEEccCCCCCc-cchhhh---ccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEec
Q 017975          229 -SSLVSLHHLDLSSTKVRG-LPQELK---ALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLR  300 (363)
Q Consensus       229 -~~L~~L~~L~l~~~~l~~-lP~~i~---~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~  300 (363)
                       ..+++|++|++++|.+.. .+..+.   .++ |+.|++++|.+...-.     ..++..+..+++|+.|++..|.++
T Consensus       248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~-----~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA-----RLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH-----HHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH-----HHHHhhcccCCcceEEECCCCcCC
Confidence             347888999988887753 222232   234 7777777766543100     001133455667777777666543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.98  E-value=2.9e-06  Score=77.35  Aligned_cols=144  Identities=17%  Similarity=0.183  Sum_probs=71.3

Q ss_pred             HHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCcc-chhhh--ccc-hhccccCc--CccCcCCCCCCC
Q 017975          202 SFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGL-PQELK--ALV-LRMLHCGS--NHWPIAEEGNVL  275 (363)
Q Consensus       202 ~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~l-P~~i~--~L~-L~~L~~~~--~~l~~lp~~~l~  275 (363)
                      ..+..+++|+.|+++++..+ .+|. +. +++|++|++..|.+..- ...+.  .++ |+.|+++.  +....-+  ...
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~  240 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMN  240 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGG
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHH
Confidence            33566677777777776222 3443 33 66777777776665421 11222  334 55554421  1100000  000


Q ss_pred             CCCcccch--hhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCC----cCCcccccccccceeeecc
Q 017975          276 SDDAESLM--KEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLP----LNLLHLANMEHLQLFSIWD  349 (363)
Q Consensus       276 ~l~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~  349 (363)
                      .+  ...+  ..+++|+.|++.+|.+..... ..+...+. ...|++|+|+.|....    .....+.++++|+.|++++
T Consensus       241 ~l--~~~l~~~~~p~Lr~L~L~~~~i~~~~~-~~la~a~~-~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~  316 (362)
T 2ra8_A          241 VF--RPLFSKDRFPNLKWLGIVDAEEQNVVV-EMFLESDI-LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY  316 (362)
T ss_dssp             GT--GGGSCTTTCTTCCEEEEESCTTHHHHH-HHHHHCSS-GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred             HH--HHHHhcCCCCCcCEEeCCCCCCchHHH-HHHHhCcc-CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence            00  0111  246778888887766543211 12222121 2234888887765211    1233456778888888888


Q ss_pred             CCCCC
Q 017975          350 SNLED  354 (363)
Q Consensus       350 c~~l~  354 (363)
                      |.+..
T Consensus       317 n~i~d  321 (362)
T 2ra8_A          317 NYLSD  321 (362)
T ss_dssp             BBCCH
T ss_pred             CcCCH
Confidence            87653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.76  E-value=2.6e-05  Score=62.93  Aligned_cols=85  Identities=18%  Similarity=0.166  Sum_probs=60.3

Q ss_pred             ccceEEEeecccccc--cCCCCCCCCccEEEeccCC-ccccchHHhcCC----CCCCEEEcccCCCcccc-CccccCCCC
Q 017975          162 EGVKRISLMENEIQS--LPQIPTCPRLQTLLLEYNH-IEEITESFFQSL----PSLRVLNLSVNHYLTEL-PVGISSLVS  233 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~--l~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l----~~L~~L~L~~~~~~~~l-p~~i~~L~~  233 (363)
                      ..++.|+++++.++.  +..+..+++|+.|++++|. ++..--..+..+    ++|++|+|++|..++.- -..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            368899999887755  3456788899999999884 554333335554    36899999998666541 124677888


Q ss_pred             CCEEEccCC-CCCc
Q 017975          234 LHHLDLSST-KVRG  246 (363)
Q Consensus       234 L~~L~l~~~-~l~~  246 (363)
                      |++|++++| .++.
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            999999988 4554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.73  E-value=2.1e-05  Score=68.15  Aligned_cols=80  Identities=25%  Similarity=0.337  Sum_probs=59.2

Q ss_pred             EEeecccccccCC-----CCCCCCccEEEeccCCccccch--HHhcCCCCCCEEEcccCCCccccCccccCCC--CCCEE
Q 017975          167 ISLMENEIQSLPQ-----IPTCPRLQTLLLEYNHIEEITE--SFFQSLPSLRVLNLSVNHYLTELPVGISSLV--SLHHL  237 (363)
Q Consensus       167 L~l~~~~~~~l~~-----~~~l~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~--~L~~L  237 (363)
                      +++..|....++.     ..++++|++|+|++|.++.+++  ..+..+++|++|+|++| .+..+ ..+..+.  +|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceE
Confidence            5566664444332     1467899999999999987653  44678999999999999 66665 3455555  89999


Q ss_pred             EccCCCCCc-cc
Q 017975          238 DLSSTKVRG-LP  248 (363)
Q Consensus       238 ~l~~~~l~~-lP  248 (363)
                      +|++|.+.. +|
T Consensus       226 ~L~~Npl~~~~~  237 (267)
T 3rw6_A          226 WLDGNSLCDTFR  237 (267)
T ss_dssp             ECTTSTTGGGCS
T ss_pred             EccCCcCccccC
Confidence            999999874 44

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.73  E-value=6e-06  Score=66.68  Aligned_cols=35  Identities=6%  Similarity=0.065  Sum_probs=23.8

Q ss_pred             CCCCEEEcccCCCccc-cCccccCCCCCCEEEccCCC
Q 017975          208 PSLRVLNLSVNHYLTE-LPVGISSLVSLHHLDLSSTK  243 (363)
Q Consensus       208 ~~L~~L~L~~~~~~~~-lp~~i~~L~~L~~L~l~~~~  243 (363)
                      ..|+.||+++|. ++. --..+.++++|++|+|++|.
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCC
Confidence            468888888884 432 22356777888888888873

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.72  E-value=1.2e-05  Score=65.94  Aligned_cols=84  Identities=15%  Similarity=0.223  Sum_probs=49.1

Q ss_pred             ccceEEEeecc-cccc-----c-CCCCCCCCccEEEeccCCccccc----hHHhcCCCCCCEEEcccCCCccc-----cC
Q 017975          162 EGVKRISLMEN-EIQS-----L-PQIPTCPRLQTLLLEYNHIEEIT----ESFFQSLPSLRVLNLSVNHYLTE-----LP  225 (363)
Q Consensus       162 ~~l~~L~l~~~-~~~~-----l-~~~~~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~~~~~~~-----lp  225 (363)
                      +.+++|++++| .+..     + ..+...++|++|++++|.+....    ...+...++|++|+|++| .++.     +.
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~  114 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALV  114 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHH
Confidence            56777777776 5543     1 12344566777777777664321    222445566777777777 3432     44


Q ss_pred             ccccCCCCCCEEEc--cCCCCCc
Q 017975          226 VGISSLVSLHHLDL--SSTKVRG  246 (363)
Q Consensus       226 ~~i~~L~~L~~L~l--~~~~l~~  246 (363)
                      ..+...++|++|+|  ++|.+..
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHhCCCceEEEecCCCCCCCH
Confidence            55666667777777  6666653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.70  E-value=3.9e-05  Score=66.53  Aligned_cols=110  Identities=21%  Similarity=0.214  Sum_probs=70.7

Q ss_pred             CCCCCCccE--EEeccCCccccc---hHHhcCCCCCCEEEcccCCCccc---cCccccCCCCCCEEEccCCCCCccchhh
Q 017975          180 IPTCPRLQT--LLLEYNHIEEIT---ESFFQSLPSLRVLNLSVNHYLTE---LPVGISSLVSLHHLDLSSTKVRGLPQEL  251 (363)
Q Consensus       180 ~~~l~~L~~--L~l~~~~l~~~~---~~~~~~l~~L~~L~L~~~~~~~~---lp~~i~~L~~L~~L~l~~~~l~~lP~~i  251 (363)
                      +...+.|..  ++++.|....++   .....++++|+.|+|++| .+..   +|..++.+++|++|+|++|.++.+ ..+
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l  214 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL  214 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh
Confidence            334445555  666777544332   222357899999999999 5554   456677899999999999999987 345


Q ss_pred             hccc---hhccccCcCccCc-CCCCCCCCCCcccchhhhccccccce
Q 017975          252 KALV---LRMLHCGSNHWPI-AEEGNVLSDDAESLMKEIHCLEQLNL  294 (363)
Q Consensus       252 ~~L~---L~~L~~~~~~l~~-lp~~~l~~l~~~~~l~~l~~L~~L~l  294 (363)
                      ..+.   |+.|++..|.+.. +|.   ........+..+++|+.|+-
T Consensus       215 ~~l~~l~L~~L~L~~Npl~~~~~~---~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          215 DKIKGLKLEELWLDGNSLCDTFRD---QSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             GGGTTSCCSEEECTTSTTGGGCSS---HHHHHHHHHHHCTTCCEESS
T ss_pred             hhcccCCcceEEccCCcCccccCc---chhHHHHHHHHCcccCeECC
Confidence            5554   8888888888653 321   00001134566777777653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.52  E-value=2.8e-05  Score=63.73  Aligned_cols=87  Identities=16%  Similarity=0.141  Sum_probs=61.8

Q ss_pred             CCCCCCccEEEeccC-Ccccc----chHHhcCCCCCCEEEcccCCCccc-----cCccccCCCCCCEEEccCCCCCc---
Q 017975          180 IPTCPRLQTLLLEYN-HIEEI----TESFFQSLPSLRVLNLSVNHYLTE-----LPVGISSLVSLHHLDLSSTKVRG---  246 (363)
Q Consensus       180 ~~~l~~L~~L~l~~~-~l~~~----~~~~~~~l~~L~~L~L~~~~~~~~-----lp~~i~~L~~L~~L~l~~~~l~~---  246 (363)
                      +...++|++|++++| .+...    ....+...++|++|+|++| .++.     +...+...++|++|+|++|.+..   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            456788999999998 77542    2233677889999999999 4442     44556667889999999998875   


Q ss_pred             --cchhhhccc-hhcccc--CcCccC
Q 017975          247 --LPQELKALV-LRMLHC--GSNHWP  267 (363)
Q Consensus       247 --lP~~i~~L~-L~~L~~--~~~~l~  267 (363)
                        +...+...+ |+.|++  ++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCC
Confidence              444554444 777777  666643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.00  E-value=0.0086  Score=45.61  Aligned_cols=52  Identities=23%  Similarity=0.355  Sum_probs=28.9

Q ss_pred             EEEeeccccc--ccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccC
Q 017975          166 RISLMENEIQ--SLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN  218 (363)
Q Consensus       166 ~L~l~~~~~~--~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~  218 (363)
                      .++-+++.++  .+|.- -.++|+.|+|++|.++.++++.|..+++|++|+|++|
T Consensus        12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            4444555554  44421 1134666666666666666665666666666666665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.35  E-value=0.021  Score=43.43  Aligned_cols=54  Identities=24%  Similarity=0.286  Sum_probs=39.1

Q ss_pred             EEEeccCCcc--ccchHHhcCCCCCCEEEcccCCCccccCcc-ccCCCCCCEEEccCCCCC
Q 017975          188 TLLLEYNHIE--EITESFFQSLPSLRVLNLSVNHYLTELPVG-ISSLVSLHHLDLSSTKVR  245 (363)
Q Consensus       188 ~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~l~  245 (363)
                      .++.+++.++  .+|.. +  -.+|++|+|++| .++.+|.. +..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~-l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA-F--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSC-C--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCC-C--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence            6777777777  66654 1  346888888888 67777654 567888888888888654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.15  E-value=0.22  Score=44.98  Aligned_cols=79  Identities=16%  Similarity=0.251  Sum_probs=43.1

Q ss_pred             CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEccCCCCCccchh-hhccc-h
Q 017975          180 IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVRGLPQE-LKALV-L  256 (363)
Q Consensus       180 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~-L  256 (363)
                      +..+..|+.+.+..+ ++.+....|.++.+|+.+.+..+  +..++ ..+.++.+|+.+.+.++.++.++.. +.... |
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence            345556666666544 44555555666666666666543  33333 2455666677777766666666542 33333 4


Q ss_pred             hcccc
Q 017975          257 RMLHC  261 (363)
Q Consensus       257 ~~L~~  261 (363)
                      +.+.+
T Consensus       313 ~~i~l  317 (379)
T 4h09_A          313 SSVTL  317 (379)
T ss_dssp             CEEEC
T ss_pred             CEEEc
Confidence            44433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.97  E-value=0.33  Score=44.18  Aligned_cols=16  Identities=6%  Similarity=-0.039  Sum_probs=9.4

Q ss_pred             cccccccccceeeecc
Q 017975          334 LHLANMEHLQLFSIWD  349 (363)
Q Consensus       334 ~~l~~l~~L~~L~l~~  349 (363)
                      .++.++++|+.+++..
T Consensus       360 ~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          360 NAFQGCINLKKVELPK  375 (394)
T ss_dssp             TTBTTCTTCCEEEEEG
T ss_pred             HHhhCCCCCCEEEECC
Confidence            3456666666666643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=91.69  E-value=0.44  Score=43.31  Aligned_cols=104  Identities=18%  Similarity=0.295  Sum_probs=56.4

Q ss_pred             CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCc-cccCCCCCCEEEccCCCCCccch-hhhccc-h
Q 017975          180 IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSSTKVRGLPQ-ELKALV-L  256 (363)
Q Consensus       180 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~-L  256 (363)
                      +..+.+|+.+.+..+ +..+....|.++..|+.+.+...  ++.++. .+.++.+|+.+.+..+ ++.++. .+.... |
T Consensus       261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeecccccEEecccc-cceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            556667777776544 23445555667777777777533  444443 4556677777776543 555543 233333 4


Q ss_pred             hccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEE
Q 017975          257 RMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIAL  297 (363)
Q Consensus       257 ~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~  297 (363)
                      +.+.+.. .++.+..         ..+.++.+|+.+.+.++
T Consensus       337 ~~i~ip~-sv~~I~~---------~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          337 ERIAIPS-SVTKIPE---------SAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CEEEECT-TCCBCCG---------GGGTTCTTCCEEEESSC
T ss_pred             CEEEECc-ccCEEhH---------hHhhCCCCCCEEEECCc
Confidence            4444432 2333332         34566667776665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=91.35  E-value=0.45  Score=43.23  Aligned_cols=101  Identities=18%  Similarity=0.374  Sum_probs=70.7

Q ss_pred             cccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCC
Q 017975          159 EEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLH  235 (363)
Q Consensus       159 ~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~  235 (363)
                      ..+..++.+.+..+ +..+.  .+.+++.|+.+.+. +.++.++...|.++.+|+.+++..+  ++.+. ..+.++.+|+
T Consensus       262 ~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          262 DSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCC
T ss_pred             eecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCC
Confidence            34566777777543 23333  36788899999986 4577888888999999999999865  55553 4688899999


Q ss_pred             EEEccCCCCCccch-hhhccc-hhccccCcC
Q 017975          236 HLDLSSTKVRGLPQ-ELKALV-LRMLHCGSN  264 (363)
Q Consensus       236 ~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~~  264 (363)
                      .+.+..+ ++.++. .+.... |+.+.+..+
T Consensus       338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             EEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             EEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            9999654 777765 455555 666555443

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=90.75  E-value=0.38  Score=42.73  Aligned_cols=115  Identities=14%  Similarity=0.098  Sum_probs=65.5

Q ss_pred             CccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccccccccchHHHHHHHH-hhcC--CCCChhhhHHHhHhcCCCC
Q 017975            1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLK-FSYD--SLPNDELRSCLLYCCLFPE   77 (363)
Q Consensus         1 Iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~-~sy~--~L~~~~lk~cfl~~s~Fp~   77 (363)
                      |++.|+|.|+++..++..+....+...|-.   .+-...      ...+...+. +.|+  .|++ ..+..+..+|+   
T Consensus       235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~---  301 (357)
T 2fna_A          235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAIN---QTLEYA------KKLILKEFENFLHGREIARK-RYLNIMRTLSK---  301 (357)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHCCHHHHHH---HHHHHH------HHHHHHHHHHHHTTCGGGHH-HHHHHHHHHTT---
T ss_pred             HHHHhCCCHHHHHHHHHHHccccchHHHHH---HHHHHH------HHHHHHHHHHHhhccccccH-HHHHHHHHHHc---
Confidence            357899999999999987653233333321   110000      001111121 2222  5777 78999999998   


Q ss_pred             CcccChHHHHHHHH-HhCC-ccCcCHHHHHHHHHHhhcccCCCCceee-chhHHHH
Q 017975           78 DSEIRKTDLIVYWE-SEGL-LDSIGGWDVLGALVRACLLEEGGDHVKM-HDMIRDM  130 (363)
Q Consensus        78 ~~~~~~~~li~~w~-a~g~-~~~~~~~~~~~~L~~rsli~~~~~~~~m-hdl~~~~  130 (363)
                      +.  +...+..... ..|. +.......+++.|+++++|....+.|++ |.++++.
T Consensus       302 g~--~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~  355 (357)
T 2fna_A          302 CG--KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA  355 (357)
T ss_dssp             CB--CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred             CC--CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence            22  4555443221 2342 2222267889999999999875566775 5566653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=90.51  E-value=0.38  Score=43.75  Aligned_cols=96  Identities=18%  Similarity=0.279  Sum_probs=58.8

Q ss_pred             cccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEc
Q 017975          161 WEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDL  239 (363)
Q Consensus       161 ~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l  239 (363)
                      ...++.+......+.. ..+..+.+|+.+.+..+ ++.+....|.++.+|+.+++..+  ++.++ ..+.++.+|+.+.+
T Consensus       275 ~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~l  350 (394)
T 4fs7_A          275 CSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINF  350 (394)
T ss_dssp             CTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECC
T ss_pred             ccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEE
Confidence            3445555444332211 13567778888888654 66677777888888888888654  55553 46777888888888


Q ss_pred             cCCCCCccch-hhhccc-hhcccc
Q 017975          240 SSTKVRGLPQ-ELKALV-LRMLHC  261 (363)
Q Consensus       240 ~~~~l~~lP~-~i~~L~-L~~L~~  261 (363)
                      ..+ ++.++. .+.... |+.+.+
T Consensus       351 p~~-l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          351 PLS-LRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             CTT-CCEECTTTBTTCTTCCEEEE
T ss_pred             Ccc-ccEehHHHhhCCCCCCEEEE
Confidence            655 666654 333333 444433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=89.80  E-value=0.5  Score=42.57  Aligned_cols=99  Identities=14%  Similarity=0.232  Sum_probs=68.2

Q ss_pred             cccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCC
Q 017975          159 EEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLH  235 (363)
Q Consensus       159 ~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~  235 (363)
                      ..+..++.+.+..+ ++.+.  .+.++.+|+.+.+..+ +..++...|.++.+|+.+.+.++ .++.++ ..+.++.+|+
T Consensus       237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~  313 (379)
T 4h09_A          237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLS  313 (379)
T ss_dssp             TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCC
T ss_pred             cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccccc-ccceehhhhhcCCCCCC
Confidence            34567788887654 55554  3667888888888654 66777777889999999999877 566664 4677888999


Q ss_pred             EEEccCCCCCccch-hhhccc-hhcccc
Q 017975          236 HLDLSSTKVRGLPQ-ELKALV-LRMLHC  261 (363)
Q Consensus       236 ~L~l~~~~l~~lP~-~i~~L~-L~~L~~  261 (363)
                      .+.+..+ ++.++. .+.... |+.+.+
T Consensus       314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          314 SVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             EEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            9988643 666654 344444 554433

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=87.50  E-value=0.61  Score=41.26  Aligned_cols=114  Identities=13%  Similarity=0.055  Sum_probs=61.4

Q ss_pred             ccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccccccccchHHHHHHHHhhcCCCCChhhhHHHhHhcCCCCCccc
Q 017975            2 ASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLYCCLFPEDSEI   81 (363)
Q Consensus         2 v~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~lk~cfl~~s~Fp~~~~~   81 (363)
                      ++.|+|.|+++..++..+....+...|-   +.+......  ....++.   .+.+ . ++ ..+..+..+|+   + .+
T Consensus       232 ~~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~l~---~l~~-~-~~-~~~~~l~~la~---g-~~  296 (350)
T 2qen_A          232 VELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTLEVAKG--LIMGELE---ELRR-R-SP-RYVDILRAIAL---G-YN  296 (350)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHHHHHHH--HHHHHHH---HHHH-H-CH-HHHHHHHHHHT---T-CC
T ss_pred             HHHhCCCHHHHHHHHHHHhccccHhHHH---HHHHHHHHH--HHHHHHH---HHHh-C-Ch-hHHHHHHHHHh---C-CC
Confidence            5679999999999987653212222221   111110000  0011221   1222 2 55 78999999987   2 24


Q ss_pred             ChHHHHHHHHHhC-CccCcCHHHHHHHHHHhhcccCCCCceeech-hHHHH
Q 017975           82 RKTDLIVYWESEG-LLDSIGGWDVLGALVRACLLEEGGDHVKMHD-MIRDM  130 (363)
Q Consensus        82 ~~~~li~~w~a~g-~~~~~~~~~~~~~L~~rsli~~~~~~~~mhd-l~~~~  130 (363)
                      +...+.....+.. -+.......+++.|.+.++|....+.|++++ ++++.
T Consensus       297 ~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~  347 (350)
T 2qen_A          297 RWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATV  347 (350)
T ss_dssp             SHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHH
Confidence            5555555432221 1222225788999999999987446677644 55443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=85.80  E-value=0.64  Score=37.85  Aligned_cols=80  Identities=19%  Similarity=0.269  Sum_probs=37.3

Q ss_pred             ccceEEEeecc-ccccc------CCCCCCCCccEEEeccCCcccc----chHHhcCCCCCCEEEcccCCCcc-----ccC
Q 017975          162 EGVKRISLMEN-EIQSL------PQIPTCPRLQTLLLEYNHIEEI----TESFFQSLPSLRVLNLSVNHYLT-----ELP  225 (363)
Q Consensus       162 ~~l~~L~l~~~-~~~~l------~~~~~l~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~~~~~~-----~lp  225 (363)
                      +.++.|++.++ .+..-      ..+..-..|+.|+|++|.+...    ....+..=+.|+.|+|++| .++     .+-
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala  119 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLL  119 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHH
Confidence            35566666553 43320      1123335566666666655421    1222344455666666666 332     122


Q ss_pred             ccccCCCCCCEEEccCC
Q 017975          226 VGISSLVSLHHLDLSST  242 (363)
Q Consensus       226 ~~i~~L~~L~~L~l~~~  242 (363)
                      +.+..-..|++|+|+++
T Consensus       120 ~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHTTTTCCCSEEECCCC
T ss_pred             HHHhhCCceeEEECCCC
Confidence            23333445666666543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=85.29  E-value=0.68  Score=37.69  Aligned_cols=65  Identities=12%  Similarity=0.050  Sum_probs=43.9

Q ss_pred             CCCCCccEEEeccC-Cccc----cchHHhcCCCCCCEEEcccCCCcc-----ccCccccCCCCCCEEEccCCCCCc
Q 017975          181 PTCPRLQTLLLEYN-HIEE----ITESFFQSLPSLRVLNLSVNHYLT-----ELPVGISSLVSLHHLDLSSTKVRG  246 (363)
Q Consensus       181 ~~l~~L~~L~l~~~-~l~~----~~~~~~~~l~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~l~~~~l~~  246 (363)
                      .+-+.|+.|+|+++ .+..    .....+..-..|+.|+|++| .++     .+-+.+..=..|++|+|++|.|..
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            34567888999875 6543    12233667778999999988 443     233344455779999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	363
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.004

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (123), Expect = 4e-08
 Identities = 34/185 (18%), Positives = 70/185 (37%), Gaps = 7/185 (3%)

Query: 175 QSLPQIPTC--PRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLV 232
             L ++P    P    L L+ N I EI +  F++L +L  L L  N      P   + LV
Sbjct: 20  LGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 79

Query: 233 SLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQL 292
            L  L LS  +++ LP+++   +  +    +    + +      +    +    + L+  
Sbjct: 80  KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 139

Query: 293 NLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNL 352
            +   + +G +     L + ++ + T    I       L  LHL   +  ++ +     L
Sbjct: 140 GIENGAFQGMKK----LSYIRIAD-TNITTIPQGLPPSLTELHLDGNKITKVDAASLKGL 194

Query: 353 EDWNV 357
            +   
Sbjct: 195 NNLAK 199

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 7e-07
 Identities = 35/176 (19%), Positives = 57/176 (32%), Gaps = 23/176 (13%)

Query: 170 MENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGIS 229
             N+I  +  +     L  L L  N +++I      SL +L  L+L+ N      P  +S
Sbjct: 205 TNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 260

Query: 230 SLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCL 289
            L  L  L L + ++  +        L  L    N                  +  I  L
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--------------ISPISNL 306

Query: 290 EQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCN-SLPLNLLHLANMEHLQL 344
           + L  + L       +       KLQ     L   +   S   +L +L N+  L  
Sbjct: 307 KNLTYLTLYFNNISDISPVSSLTKLQR----LFFANNKVSDVSSLANLTNINWLSA 358

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 8e-07
 Identities = 21/122 (17%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITES 202
             L      +++   +     +  + L EN+++ +  I     L  L L +N+I +I  S
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI--S 323

Query: 203 FFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCG 262
              SL  L+ L  + N  ++++   +++L +++ L     ++  L        +  L   
Sbjct: 324 PVSSLTKLQRLFFANNK-VSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 381

Query: 263 SN 264
             
Sbjct: 382 DQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 5e-06
 Identities = 11/99 (11%), Positives = 32/99 (32%), Gaps = 2/99 (2%)

Query: 120 HVKMHDMIRDMALWIANEIEEEEKFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ 179
              +      +         +   +L      ++D   +     ++R+    N++  +  
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS 346

Query: 180 IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVN 218
           +     +  L   +N I ++T     +L  +  L L+  
Sbjct: 347 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 152 LTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLR 211
           +TD     + + V  +      I+S+  +     L  +    N + +IT    ++L  L 
Sbjct: 34  VTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLV 91

Query: 212 VLNLSVNHY 220
            + ++ N  
Sbjct: 92  DILMNNNQI 100

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 178 PQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHL 237
                 P L+ L +  N + E+        P L  L  S NH L E+P       +L  L
Sbjct: 278 SLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNH-LAEVP---ELPQNLKQL 329

Query: 238 DLSSTKVRGLPQELKAL 254
            +    +R  P   +++
Sbjct: 330 HVEYNPLREFPDIPESV 346

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 7e-06
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTEL 224
           + +++  N++  LP     PRL+ L+  +NH+ E+ E       +L+ L++  N  L E 
Sbjct: 287 EELNVSNNKLIELP--ALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNP-LREF 339

Query: 225 PVGISSLVSLH 235
           P    S+  L 
Sbjct: 340 PDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 191 LEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQE 250
              N       S     PSL  LN+S N  L ELP   +    L  L  S   +  +P+ 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELP---ALPPRLERLIASFNHLAEVPEL 322

Query: 251 LKALVLRMLHCGSNH 265
            +   L+ LH   N 
Sbjct: 323 PQN--LKQLHVEYNP 335

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 8/69 (11%)

Query: 1   MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSL 60
                 G P  L    ++   K F E+  +    + +           V     +SY SL
Sbjct: 214 TIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLES------RGLVGVECITPYSYKSL 266

Query: 61  PNDELRSCL 69
               L+ C+
Sbjct: 267 AM-ALQRCV 274

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 10/61 (16%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 156 PKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNL 215
             +     +  +   +N+I  +  + + P L  + L+ N I ++  S   +  +L ++ L
Sbjct: 167 TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTL 224

Query: 216 S 216
           +
Sbjct: 225 T 225

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 3/43 (6%)

Query: 183 CPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP 225
                 L +    I  +     ++L  LR  +    + L +LP
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARST---YNLKKLP 239

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 33/218 (15%), Positives = 61/218 (27%), Gaps = 26/218 (11%)

Query: 157 KIEEWEGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNL 215
           ++ +      ++  +  + +LP  +P       L L  N +   + +       L  LNL
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 216 S--------VNHYLTELPV------GISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHC 261
                    V+  L  L         + SL  L     + T +      L +L L  L  
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 262 GSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQAL 321
                 +  +GN L      L+       +   +A +               L  +   L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTP-TPKLEKLSLANNNLTELPAGLLNGLENLDTLL--L 179

Query: 322 HIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC 359
                 ++P        +    L      N   W  +C
Sbjct: 180 QENSLYTIPKGFFGSHLLPFAFL----HGN--PWLCNC 211

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 20/152 (13%), Positives = 42/152 (27%), Gaps = 10/152 (6%)

Query: 191 LEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQE 250
           L    IE+  +  + +    R L+L     +  +    ++L     +D S  ++R L   
Sbjct: 3   LTAELIEQAAQ--YTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLDGF 59

Query: 251 LKALVLRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLK 310
                L+ L   +N             D          L   +L+ L           L 
Sbjct: 60  PLLRRLKTLLVNNNRIC----RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 115

Query: 311 FPKLQNITQALHIKDCNSLPLNLLHLANMEHL 342
           +  +            +     +  +  +  L
Sbjct: 116 YLCILRNP---VTNKKHYRLYVIYKVPQVRVL 144

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 22/116 (18%)

Query: 165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQ------------------- 205
           + + L   ++  L  +     +  L L +N +  +  +                      
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 206 --SLPSLRVLNLSVNHYLT-ELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRM 258
             +LP L+ L L  N          + S   L  L+L    +       + L   +
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 12/107 (11%)

Query: 211 RVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALVLRMLHCGSNHWPIAE 270
           RVL+L+    LT L   +  L+ + HLDLS  ++R LP  L AL    +   S++     
Sbjct: 1   RVLHLAHKD-LTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 271 EGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNI 317
           +G          +  +  L++L L    L+ S  ++  +  P+L  +
Sbjct: 59  DG----------VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 95

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 4/102 (3%)

Query: 169 LMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV 226
           L +N +Q+LP         L  L L  N I  + E  F+ L SL  L L  N      P 
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 227 GISSLVSLHHLDLSSTKVRGLPQELKALV--LRMLHCGSNHW 266
               L  L  L L +  +  LP E  A +  L+ L    N W
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	363
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.75
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.73
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.62
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.62
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.6
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.6
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.56
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.55
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.53
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.49
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.48
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.36
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.3
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.26
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.23
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.1
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.06
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.0
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.8
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.28
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.22
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.68
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.63
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.58
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.61
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.27
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.26
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	87.08

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.1e-18  Score=148.79  Aligned_cols=190  Identities=22%  Similarity=0.205  Sum_probs=156.4

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCc
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYL  221 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~  221 (363)
                      .+.+.+.+++.+|.-- .+++++|++++|.++.++  .+..+++|++|++++|.++.++.  ++.+++|++|++++| .+
T Consensus        14 ~v~C~~~~L~~iP~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~Ls~N-~l   89 (266)
T d1p9ag_          14 EVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHN-QL   89 (266)
T ss_dssp             EEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSS-CC
T ss_pred             EEEccCCCCCeeCcCc-CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--ccccccccccccccc-cc
Confidence            3567777777776421 257999999999999886  47899999999999999998875  678999999999999 78


Q ss_pred             cccCccccCCCCCCEEEccCCCCCccch-hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEe
Q 017975          222 TELPVGISSLVSLHHLDLSSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSL  299 (363)
Q Consensus       222 ~~lp~~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~  299 (363)
                      +..|..+..+++|++|+++++.+.+++. .+..+. +..|++..|.+..+|.         ..+..+++++.|++.+|.+
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~---------~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP---------GLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT---------TTTTTCTTCCEEECTTSCC
T ss_pred             cccccccccccccccccccccccceeeccccccccccccccccccccceecc---------ccccccccchhcccccccc
Confidence            8888899999999999999999988765 445666 8888999999888874         5567788999999999988


Q ss_pred             ccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCC
Q 017975          300 RGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNL  352 (363)
Q Consensus       300 ~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~  352 (363)
                      ....+ +.+..++++    ++|+|++|. +...+..+..+++|+.|+|+||+.
T Consensus       161 ~~~~~-~~~~~l~~L----~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         161 TELPA-GLLNGLENL----DTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             SCCCT-TTTTTCTTC----CEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             cccCc-ccccccccc----ceeecccCC-CcccChhHCCCCCCCEEEecCCCC
Confidence            76543 567777777    999999987 445566778899999999999974

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.73  E-value=3.1e-18  Score=152.38  Aligned_cols=198  Identities=16%  Similarity=0.191  Sum_probs=156.2

Q ss_pred             ccccccccceEEEeec-cccc-ccC-CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCC
Q 017975          156 PKIEEWEGVKRISLME-NEIQ-SLP-QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLV  232 (363)
Q Consensus       156 ~~~~~~~~l~~L~l~~-~~~~-~l~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~  232 (363)
                      +.+..++++++|++++ |.+. .+| .+.++++|++|++++|.+...++..+..+.+|+++++++|.....+|..++.++
T Consensus        70 ~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~  149 (313)
T d1ogqa_          70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             hHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCc
Confidence            4678899999999986 6776 576 588999999999999999988887799999999999999987888999999999


Q ss_pred             CCCEEEccCCCCC-ccchhhhccc--hhccccCcCccCcCCC---CCCC-----------CCCcccchhhhccccccceE
Q 017975          233 SLHHLDLSSTKVR-GLPQELKALV--LRMLHCGSNHWPIAEE---GNVL-----------SDDAESLMKEIHCLEQLNLI  295 (363)
Q Consensus       233 ~L~~L~l~~~~l~-~lP~~i~~L~--L~~L~~~~~~l~~lp~---~~l~-----------~l~~~~~l~~l~~L~~L~l~  295 (363)
                      +|+++++++|.+. .+|..+..+.  +..++.++|+++..+.   .++.           ....|..+..+++++.+++.
T Consensus       150 ~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~  229 (313)
T d1ogqa_         150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             ccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999887 5899888887  5778888888765443   1111           11456667777888888888


Q ss_pred             EEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975          296 ALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       296 ~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  359 (363)
                      ++.+.+..  ..+..++++    +.|++++|+.....|..+.++++|++|+|++|.+.+.+|+.
T Consensus       230 ~~~l~~~~--~~~~~~~~L----~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         230 KNSLAFDL--GKVGLSKNL----NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             SSEECCBG--GGCCCCTTC----CEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             cccccccc--ccccccccc----ccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            88776543  345555555    88888887754445667888888888888888887777764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.1e-17  Score=143.48  Aligned_cols=179  Identities=22%  Similarity=0.217  Sum_probs=149.4

Q ss_pred             ccceEEEeecccccccCC-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEcc
Q 017975          162 EGVKRISLMENEIQSLPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLS  240 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~  240 (363)
                      .....++.++++++.+|. +.  +++++|++++|.++.+++..|.++++|++|+|++| .++.+| .++.+++|++|+++
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQ-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEE-CCSCCTTCCEEECC
T ss_pred             CCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccc-cccccc-cccccccccccccc
Confidence            455667888888998875 32  68999999999999999888999999999999999 788887 57899999999999


Q ss_pred             CCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhh
Q 017975          241 STKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQ  319 (363)
Q Consensus       241 ~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~  319 (363)
                      +|+++..|..+..+. |+.|+++.+.+..++.         ..+..+.+++.|.+.+|.+....+ ..+..++++    +
T Consensus        86 ~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~---------~~~~~l~~l~~L~l~~n~l~~l~~-~~~~~l~~l----~  151 (266)
T d1p9ag_          86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL---------GALRGLGELQELYLKGNELKTLPP-GLLTPTPKL----E  151 (266)
T ss_dssp             SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS---------STTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC----C
T ss_pred             cccccccccccccccccccccccccccceeec---------cccccccccccccccccccceecc-ccccccccc----h
Confidence            999999999999998 9999999999887764         556778889999998887765433 555566666    9


Q ss_pred             eeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975          320 ALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       320 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  359 (363)
                      .+++++|+.....+..+..+++|++|+|++|.+. .+|+.
T Consensus       152 ~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~  190 (266)
T d1p9ag_         152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG  190 (266)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred             hcccccccccccCccccccccccceeecccCCCc-ccChh
Confidence            9999998765555567899999999999999866 67654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=3.3e-17  Score=137.04  Aligned_cols=167  Identities=22%  Similarity=0.328  Sum_probs=140.2

Q ss_pred             ccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEE
Q 017975          158 IEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHL  237 (363)
Q Consensus       158 ~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L  237 (363)
                      ...+..+++|++.++.++.++.+..+++|++|++++|.++.+++  ++.+++|++|++++| .++.+| .++.+++|++|
T Consensus        42 ~~~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEE
T ss_pred             HHHhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cccCccccccccccc-cccccc-ccccccccccc
Confidence            34567899999999999999999999999999999999999876  789999999999999 788888 69999999999


Q ss_pred             EccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhh
Q 017975          238 DLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQN  316 (363)
Q Consensus       238 ~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~  316 (363)
                      ++++|.+..++ .+..+. ++.+++++|.+...+           .+..+++|+.+++.+|.+.+..   .+..++++  
T Consensus       118 ~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~-----------~~~~l~~L~~l~l~~n~l~~i~---~l~~l~~L--  180 (210)
T d1h6ta2         118 SLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-----------VLSRLTKLDTLSLEDNQISDIV---PLAGLTKL--  180 (210)
T ss_dssp             ECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-----------GGGGCTTCSEEECCSSCCCCCG---GGTTCTTC--
T ss_pred             ccccccccccc-cccccccccccccccccccccc-----------cccccccccccccccccccccc---cccCCCCC--
Confidence            99999988775 566777 888888888876543           4667889999999988876543   36667776  


Q ss_pred             hhheeeecccCCCCcCCcccccccccceeeecc
Q 017975          317 ITQALHIKDCNSLPLNLLHLANMEHLQLFSIWD  349 (363)
Q Consensus       317 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  349 (363)
                        +.|++++|. +.. ++.+.++++|++|+|++
T Consensus       181 --~~L~Ls~N~-i~~-l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         181 --QNLYLSKNH-ISD-LRALAGLKNLDVLELFS  209 (210)
T ss_dssp             --CEEECCSSC-CCB-CGGGTTCTTCSEEEEEE
T ss_pred             --CEEECCCCC-CCC-ChhhcCCCCCCEEEccC
Confidence              999999985 333 45799999999999975

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.1e-16  Score=140.28  Aligned_cols=204  Identities=24%  Similarity=0.274  Sum_probs=130.0

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      ..+.+.+.+++.+|.. -.+.++.|++++|.++.+|.  +.++++|++|++++|.+..+++..+..+..++.++...+..
T Consensus        14 ~~v~c~~~~L~~iP~~-ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             eEEEcCCCCCCccCCC-CCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            4556677777777642 23578999999999999874  78899999999999988777766666677777776655545


Q ss_pred             cccc-CccccCCCCCCEEEccCCCCCccchh-hhccc-hhccccCcCccCcCCC---CC---CCCC---------Ccccc
Q 017975          221 LTEL-PVGISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIAEE---GN---VLSD---------DAESL  282 (363)
Q Consensus       221 ~~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l~~lp~---~~---l~~l---------~~~~~  282 (363)
                      ++.+ |..++++++|++|++++|.+..++.. +.... |+.++++.|.++.+|.   .+   +..+         -.+..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            5555 44566777777777777766665443 33344 6666677777766653   01   1111         11234


Q ss_pred             hhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCC
Q 017975          283 MKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNL  352 (363)
Q Consensus       283 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~  352 (363)
                      +.++++|+.+.+.+|.+.+..+ ..+..++++    ++|++++|......+..+..+++|+.|++++|+.
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~-~~f~~l~~L----~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRL----MTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECT-TTTTTCTTC----CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             hccccccchhhhhhccccccCh-hHhhhhhhc----ccccccccccccccccccccccccCEEEecCCCC
Confidence            5556666666666666554333 445555554    6666666654444344566666667777766654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.3e-16  Score=132.18  Aligned_cols=167  Identities=19%  Similarity=0.286  Sum_probs=134.1

Q ss_pred             CCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCC
Q 017975          154 DAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVS  233 (363)
Q Consensus       154 ~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~  233 (363)
                      .......+++++.|++.++.++.++.+..+++|++|++++|.++.+++  ++++++|++|++++| .+..+| .++++++
T Consensus        32 ~~~~~~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~  107 (199)
T d2omxa2          32 DTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADIT-PLANLTN  107 (199)
T ss_dssp             SEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTT
T ss_pred             CccCHHHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCCccccccccccc-cccccc-ccccccc
Confidence            333445678999999999999999889999999999999999998876  899999999999999 677777 5899999


Q ss_pred             CCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCC
Q 017975          234 LHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFP  312 (363)
Q Consensus       234 L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~  312 (363)
                      |++|+++++.+..++ .+..++ |+.|++++|.+..++           .+..+++|+.|++.+|.+.+..   .+..++
T Consensus       108 L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-----------~l~~~~~L~~L~l~~n~l~~l~---~l~~l~  172 (199)
T d2omxa2         108 LTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDIS-----------ALSGLTSLQQLNFSSNQVTDLK---PLANLT  172 (199)
T ss_dssp             CSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-----------GGTTCTTCSEEECCSSCCCCCG---GGTTCT
T ss_pred             ccccccccccccccc-ccchhhhhHHhhhhhhhhcccc-----------cccccccccccccccccccCCc---cccCCC
Confidence            999999999887764 466777 899889988876654           4677888888888888776542   356666


Q ss_pred             chhhhhheeeecccCCCCcCCccccccccccee
Q 017975          313 KLQNITQALHIKDCNSLPLNLLHLANMEHLQLF  345 (363)
Q Consensus       313 ~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  345 (363)
                      ++    ++|++++|+ +.. ++.+.++++|+.|
T Consensus       173 ~L----~~L~ls~N~-i~~-i~~l~~L~~L~~L  199 (199)
T d2omxa2         173 TL----ERLDISSNK-VSD-ISVLAKLTNLESL  199 (199)
T ss_dssp             TC----CEEECCSSC-CCC-CGGGGGCTTCSEE
T ss_pred             CC----CEEECCCCC-CCC-CccccCCCCCCcC
Confidence            66    899999875 333 4457777787765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=2.6e-15  Score=132.65  Aligned_cols=201  Identities=20%  Similarity=0.287  Sum_probs=133.3

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      ..+.+.+..++.+|.- -.+++++|++++|.++.++  .+.++++|++|++++|.+..+++..|.++++|++|++++| .
T Consensus        13 ~~~~C~~~~L~~lP~~-l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~   90 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-Q   90 (305)
T ss_dssp             TEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-C
T ss_pred             CEEEecCCCCCccCCC-CCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC-c
Confidence            4567777778877752 2368999999999999997  4789999999999999999998887999999999999999 7


Q ss_pred             ccccCccccCCCCCCEEEccCCCCCccchh---------------------------hhccc-hhccccCcCccCcCCC-
Q 017975          221 LTELPVGISSLVSLHHLDLSSTKVRGLPQE---------------------------LKALV-LRMLHCGSNHWPIAEE-  271 (363)
Q Consensus       221 ~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~---------------------------i~~L~-L~~L~~~~~~l~~lp~-  271 (363)
                      ++.+|..+.  ..|+.|++..+.+..++..                           +..++ |+.++++++.+..+|. 
T Consensus        91 l~~l~~~~~--~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~  168 (305)
T d1xkua_          91 LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG  168 (305)
T ss_dssp             CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS
T ss_pred             cCcCccchh--hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc
Confidence            888886543  4666776666655544322                           12222 4555555666655554 


Q ss_pred             --CCCCCC---------CcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCccccccc
Q 017975          272 --GNVLSD---------DAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANME  340 (363)
Q Consensus       272 --~~l~~l---------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~  340 (363)
                        .++..+         ..+..+..++.++.|.+.+|.+.+..+ ..+..++++    ++|++++|+. ...+..+.+++
T Consensus       169 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~-~~~~~l~~L----~~L~L~~N~L-~~lp~~l~~l~  242 (305)
T d1xkua_         169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHL----RELHLNNNKL-VKVPGGLADHK  242 (305)
T ss_dssp             CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTC----CEEECCSSCC-SSCCTTTTTCS
T ss_pred             cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccc-ccccccccc----eeeecccccc-ccccccccccc
Confidence              222222         233445556666666666665544332 444455554    6777777643 23344566677


Q ss_pred             ccceeeeccCCCC
Q 017975          341 HLQLFSIWDSNLE  353 (363)
Q Consensus       341 ~L~~L~l~~c~~l  353 (363)
                      +|++|++++|++.
T Consensus       243 ~L~~L~Ls~N~i~  255 (305)
T d1xkua_         243 YIQVVYLHNNNIS  255 (305)
T ss_dssp             SCCEEECCSSCCC
T ss_pred             CCCEEECCCCccC
Confidence            7777777776543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=1.7e-15  Score=127.99  Aligned_cols=176  Identities=21%  Similarity=0.309  Sum_probs=116.4

Q ss_pred             CCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCC
Q 017975          153 TDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLV  232 (363)
Q Consensus       153 ~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~  232 (363)
                      ++......+.+++.|++.++.++.++.+..+++|++|++++|.+..+.+  +..+++|+++++++| .++.++ .+.+++
T Consensus        32 ~d~~~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n-~~~~i~-~l~~l~  107 (227)
T d1h6ua2          32 TDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQ  107 (227)
T ss_dssp             TSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCT
T ss_pred             CCcCCHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--ccccccccccccccc-cccccc-cccccc
Confidence            3344455677888899988888888888888999999999988887765  788889999999888 667766 688888


Q ss_pred             CCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCC
Q 017975          233 SLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKF  311 (363)
Q Consensus       233 ~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l  311 (363)
                      +|++++++++....++. +.... +..+.++++.+...+           .+...++|+.|.+.+|.+...   ..+.++
T Consensus       108 ~L~~l~l~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~L~~L~l~~n~~~~~---~~l~~l  172 (227)
T d1h6ua2         108 SIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS-----------PLAGLTNLQYLSIGNAQVSDL---TPLANL  172 (227)
T ss_dssp             TCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-----------GGGGCTTCCEEECCSSCCCCC---GGGTTC
T ss_pred             cccccccccccccccch-hccccchhhhhchhhhhchhh-----------hhccccccccccccccccccc---hhhccc
Confidence            89999988887766543 22333 555555555544332           344555666666655544332   223444


Q ss_pred             CchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCC
Q 017975          312 PKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       312 ~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l  353 (363)
                      +++    ++|++++|. +.. ++.+.++++|+.|++++|++.
T Consensus       173 ~~L----~~L~Ls~n~-l~~-l~~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         173 SKL----TTLKADDNK-ISD-ISPLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             TTC----CEEECCSSC-CCC-CGGGGGCTTCCEEECTTSCCC
T ss_pred             ccc----eecccCCCc-cCC-ChhhcCCCCCCEEECcCCcCC
Confidence            444    666666653 222 334566666666666666543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=7.4e-15  Score=133.51  Aligned_cols=201  Identities=19%  Similarity=0.293  Sum_probs=120.4

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC---
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY---  220 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~---  220 (363)
                      .+...+.+++.+..+..++++++|++++|.++.++.+.++++|++|++++|.+..+++  ++++++|+.|+++++..   
T Consensus        48 ~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~~~~~~~~  125 (384)
T d2omza2          48 TLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI  125 (384)
T ss_dssp             EEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             EEECCCCCCCCccccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccc--cccccccccccccccccccc
Confidence            3444555555566666667777777777777777667777777777777777666554  55666666666554311   


Q ss_pred             --------------------------------------------------------------------------------
Q 017975          221 --------------------------------------------------------------------------------  220 (363)
Q Consensus       221 --------------------------------------------------------------------------------  220 (363)
                                                                                                      
T Consensus       126 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~  205 (384)
T d2omza2         126 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT  205 (384)
T ss_dssp             GGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeecc
Confidence                                                                                            


Q ss_pred             ---ccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCC----CCCCC----------------
Q 017975          221 ---LTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEE----GNVLS----------------  276 (363)
Q Consensus       221 ---~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~----~~l~~----------------  276 (363)
                         +..++ ..+..++|++|++++|.++.+| .+..+. |+.++++.|.++.++.    .++..                
T Consensus       206 ~n~i~~~~-~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  283 (384)
T d2omza2         206 NNQISDIT-PLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG  283 (384)
T ss_dssp             SSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTT
T ss_pred             CCccCCCC-cccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCcccc
Confidence               11111 1233445566666666655554 334444 4444444444444332    11111                


Q ss_pred             -------------CCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccc
Q 017975          277 -------------DDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQ  343 (363)
Q Consensus       277 -------------l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  343 (363)
                                   +.....+..+++++.|++.+|.+.+..   .+..++++    ++|++++|+ +.. ++.+.++++|+
T Consensus       284 ~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~---~l~~l~~L----~~L~L~~n~-l~~-l~~l~~l~~L~  354 (384)
T d2omza2         284 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS---PVSSLTKL----QRLFFANNK-VSD-VSSLANLTNIN  354 (384)
T ss_dssp             CTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG---GGGGCTTC----CEEECCSSC-CCC-CGGGGGCTTCC
T ss_pred             ccccccccccccccccccccchhcccCeEECCCCCCCCCc---ccccCCCC----CEEECCCCC-CCC-ChhHcCCCCCC
Confidence                         122344666777788888777776543   25566665    999999985 333 44688999999


Q ss_pred             eeeeccCCCCCccc
Q 017975          344 LFSIWDSNLEDWNV  357 (363)
Q Consensus       344 ~L~l~~c~~l~~~~  357 (363)
                      +|++++|++.+..|
T Consensus       355 ~L~l~~N~l~~l~~  368 (384)
T d2omza2         355 WLSAGHNQISDLTP  368 (384)
T ss_dssp             EEECCSSCCCBCGG
T ss_pred             EEECCCCcCCCChh
Confidence            99999998775543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.1e-15  Score=131.86  Aligned_cols=170  Identities=23%  Similarity=0.300  Sum_probs=101.1

Q ss_pred             eEEecCCCCCCCcc--ccccccceEEEeecccccccCC---------------------------CCCCCCccEEEeccC
Q 017975          144 FLVRAGVGLTDAPK--IEEWEGVKRISLMENEIQSLPQ---------------------------IPTCPRLQTLLLEYN  194 (363)
Q Consensus       144 ~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~l~~---------------------------~~~l~~L~~L~l~~~  194 (363)
                      .+...+..++.++.  +..++++++|+++++.+..++.                           +.++++|++|++++|
T Consensus        36 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n  115 (284)
T d1ozna_          36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC  115 (284)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCc
Confidence            45666666666553  6677889999998887765432                           233444555555554


Q ss_pred             CccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEccCCCCCccch-hhhccc-hhccccCcCccCcCCC
Q 017975          195 HIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSSTKVRGLPQ-ELKALV-LRMLHCGSNHWPIAEE  271 (363)
Q Consensus       195 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~  271 (363)
                      .+..++...+..+.+|+.+++++| .++.+| ..+..+++|++|++++|+++.+|. .+..++ |+.++++.|++..+  
T Consensus       116 ~~~~~~~~~~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i--  192 (284)
T d1ozna_         116 GLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV--  192 (284)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE--
T ss_pred             ccccccccccchhcccchhhhccc-cccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc--
Confidence            444444433444444555555554 333332 234444445555555555544432 233344 44444444444433  


Q ss_pred             CCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCC
Q 017975          272 GNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNS  328 (363)
Q Consensus       272 ~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~  328 (363)
                             .|..+..+++|+.|++.+|.+.+..+ ..+..++++    ++|++++|+.
T Consensus       193 -------~~~~f~~l~~L~~L~l~~N~i~~~~~-~~~~~~~~L----~~L~l~~N~l  237 (284)
T d1ozna_         193 -------HPHAFRDLGRLMTLYLFANNLSALPT-EALAPLRAL----QYLRLNDNPW  237 (284)
T ss_dssp             -------CTTTTTTCTTCCEEECCSSCCSCCCH-HHHTTCTTC----CEEECCSSCE
T ss_pred             -------ChhHhhhhhhcccccccccccccccc-ccccccccc----CEEEecCCCC
Confidence                   34778899999999999999876544 667777777    9999999764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=4.7e-15  Score=123.65  Aligned_cols=160  Identities=18%  Similarity=0.289  Sum_probs=135.6

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~  222 (363)
                      ..+...+..+..++.+..+++++.|++++|.++.++.+..+++|++|++++|.++.++.  +.++++|+.|++++| ...
T Consensus        49 ~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~~-~~~  125 (210)
T d1h6ta2          49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN-GIS  125 (210)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTS-CCC
T ss_pred             cEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCcccccccccccccccccc--ccccccccccccccc-ccc
Confidence            35666777777788888899999999999999999989999999999999999998874  889999999999999 566


Q ss_pred             ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975          223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG  301 (363)
Q Consensus       223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~  301 (363)
                      .++ .+..+++|+++++++|.+...+ .+..++ |+.++++.|.++.++           .+.++++|+.|++.+|.+.+
T Consensus       126 ~~~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~-----------~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         126 DIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIV-----------PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             CCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG-----------GGTTCTTCCEEECCSSCCCB
T ss_pred             ccc-cccccccccccccccccccccc-cccccccccccccccccccccc-----------cccCCCCCCEEECCCCCCCC
Confidence            665 7899999999999999998765 566777 999999999887765           37789999999999998764


Q ss_pred             CcccccccCCCchhhhhheeeecc
Q 017975          302 SRGVENFLKFPKLQNITQALHIKD  325 (363)
Q Consensus       302 ~~~~~~l~~l~~l~~~L~~L~l~~  325 (363)
                      .   +.+.++++|    ++|+|++
T Consensus       193 l---~~l~~l~~L----~~L~Ls~  209 (210)
T d1h6ta2         193 L---RALAGLKNL----DVLELFS  209 (210)
T ss_dssp             C---GGGTTCTTC----SEEEEEE
T ss_pred             C---hhhcCCCCC----CEEEccC
Confidence            3   346677776    9999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=2.3e-14  Score=120.89  Aligned_cols=182  Identities=19%  Similarity=0.320  Sum_probs=147.8

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~  222 (363)
                      ..+...+..++.++.+..+++++.|++++|.+..++.+..+++++++++++|.++.++.  +.++++|++++++++ ...
T Consensus        44 ~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~--l~~l~~L~~l~l~~~-~~~  120 (227)
T d1h6ua2          44 TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTST-QIT  120 (227)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTS-CCC
T ss_pred             CEEECCCCCCCcchhHhcCCCCcEeecCCceeecccccccccccccccccccccccccc--ccccccccccccccc-ccc
Confidence            35566777788888889999999999999999999889999999999999999988764  889999999999999 444


Q ss_pred             ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975          223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG  301 (363)
Q Consensus       223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~  301 (363)
                      .++ .+...+.++++.++++.+...+. +.... |+.|+++++.+...+           .+..+++|+.|++.+|.+.+
T Consensus       121 ~~~-~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~-----------~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         121 DVT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT-----------PLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             CCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-----------GGTTCTTCCEEECCSSCCCC
T ss_pred             ccc-hhccccchhhhhchhhhhchhhh-hccccccccccccccccccch-----------hhcccccceecccCCCccCC
Confidence            443 57788999999999998876643 44555 888888888776543           47788999999999988765


Q ss_pred             CcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeecc
Q 017975          302 SRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWD  349 (363)
Q Consensus       302 ~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  349 (363)
                      .   ..+..+++|    ++|++++|+ +.. +..+.++++|+.|++++
T Consensus       188 l---~~l~~l~~L----~~L~Ls~N~-lt~-i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 I---SPLASLPNL----IEVHLKNNQ-ISD-VSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             C---GGGGGCTTC----CEEECTTSC-CCB-CGGGTTCTTCCEEEEEE
T ss_pred             C---hhhcCCCCC----CEEECcCCc-CCC-CcccccCCCCCEEEeeC
Confidence            3   235666666    999999985 333 44688999999999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=1.3e-14  Score=119.94  Aligned_cols=153  Identities=22%  Similarity=0.373  Sum_probs=128.7

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~  222 (363)
                      ..+...+..+..+..+..++++++|++++|.++.++.+..+++|++|++++|.+..+++  +.++++|++|+++++ ...
T Consensus        43 ~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~~-~~~  119 (199)
T d2omxa2          43 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QIT  119 (199)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECCSS-CCC
T ss_pred             CEEECCCCCCCCccccccCCCcCcCccccccccCcccccCCcccccccccccccccccc--ccccccccccccccc-ccc
Confidence            35666777778888888899999999999999999889999999999999999988875  889999999999999 555


Q ss_pred             ccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975          223 ELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG  301 (363)
Q Consensus       223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~  301 (363)
                      .++ .+..+++|++|++++|.+..+| .+..+. |+.|++.+|.++.++           .+.++++|+.|++.+|.+++
T Consensus       120 ~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~-----------~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         120 DID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLK-----------PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-----------GGTTCTTCCEEECCSSCCCC
T ss_pred             ccc-ccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCc-----------cccCCCCCCEEECCCCCCCC
Confidence            554 6889999999999999998876 466777 999999999887765           47889999999999998765


Q ss_pred             CcccccccCCCch
Q 017975          302 SRGVENFLKFPKL  314 (363)
Q Consensus       302 ~~~~~~l~~l~~l  314 (363)
                      .   +.+.++++|
T Consensus       187 i---~~l~~L~~L  196 (199)
T d2omxa2         187 I---SVLAKLTNL  196 (199)
T ss_dssp             C---GGGGGCTTC
T ss_pred             C---ccccCCCCC
Confidence            3   235555555

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=1.8e-14  Score=130.96  Aligned_cols=167  Identities=17%  Similarity=0.267  Sum_probs=97.8

Q ss_pred             cccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEE
Q 017975          159 EEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLD  238 (363)
Q Consensus       159 ~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~  238 (363)
                      ..+++++.|++.+|.++.++.+..+++|+.|++.+|.++.+++  ++.+++|++|+++++ .+..++ .+..+..++++.
T Consensus       216 ~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~-~l~~~~-~~~~~~~l~~l~  291 (384)
T d2omza2         216 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN-QISNIS-PLAGLTALTNLE  291 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred             cccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCc--ccccccCCEeeccCc-ccCCCC-cccccccccccc
Confidence            3334445555555544444444444555555555554444433  444455555555544 333333 244444555555


Q ss_pred             ccCCCCCccchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhh
Q 017975          239 LSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNI  317 (363)
Q Consensus       239 l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~  317 (363)
                      ++.|.+..++ .+..+. ++.|+++.|+++.++           .+..+++|+.|++.+|.+++.   +.+..+++|   
T Consensus       292 ~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~-----------~l~~l~~L~~L~L~~n~l~~l---~~l~~l~~L---  353 (384)
T d2omza2         292 LNENQLEDIS-PISNLKNLTYLTLYFNNISDIS-----------PVSSLTKLQRLFFANNKVSDV---SSLANLTNI---  353 (384)
T ss_dssp             CCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCG-----------GGGGCTTCCEEECCSSCCCCC---GGGGGCTTC---
T ss_pred             cccccccccc-ccchhcccCeEECCCCCCCCCc-----------ccccCCCCCEEECCCCCCCCC---hhHcCCCCC---
Confidence            5555444432 233333 555555555554433           378899999999999987653   346667766   


Q ss_pred             hheeeecccCCCCcCCcccccccccceeeeccC
Q 017975          318 TQALHIKDCNSLPLNLLHLANMEHLQLFSIWDS  350 (363)
Q Consensus       318 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c  350 (363)
                       ++|++++|+. .. +..+.++++|+.|+|++|
T Consensus       354 -~~L~l~~N~l-~~-l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         354 -NWLSAGHNQI-SD-LTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             -CEEECCSSCC-CB-CGGGTTCTTCSEEECCCE
T ss_pred             -CEEECCCCcC-CC-ChhhccCCCCCEeeCCCC
Confidence             9999998863 32 334889999999999987

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=8.9e-15  Score=111.03  Aligned_cols=103  Identities=21%  Similarity=0.281  Sum_probs=88.1

Q ss_pred             eEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCC
Q 017975          165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKV  244 (363)
Q Consensus       165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l  244 (363)
                      |.|++++|+++.++.+..+++|++|++++|.++.+|+. ++.+++|++|++++| .++.+| +++.+++|++|++++|.+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccc-cccccC-ccccccccCeEECCCCcc
Confidence            57889999999988888899999999999999988876 788999999999999 788887 689999999999999999


Q ss_pred             Cccch--hhhccc-hhccccCcCccCcCC
Q 017975          245 RGLPQ--ELKALV-LRMLHCGSNHWPIAE  270 (363)
Q Consensus       245 ~~lP~--~i~~L~-L~~L~~~~~~l~~lp  270 (363)
                      ..+|.  .+..++ |+.|++++|.+...+
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            88763  567777 888888888877665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.53  E-value=3.2e-15  Score=132.58  Aligned_cols=193  Identities=16%  Similarity=0.193  Sum_probs=149.3

Q ss_pred             ccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCC
Q 017975          156 PKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVS  233 (363)
Q Consensus       156 ~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~  233 (363)
                      +.+..++++++|++++|.+..++.  +..+.+|+.+++++|.+....+..+++++.|+++++++|.....+|..++.+..
T Consensus        95 ~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~  174 (313)
T d1ogqa_          95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK  174 (313)
T ss_dssp             GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCT
T ss_pred             cccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccc
Confidence            468889999999999999988653  678899999999999887766656999999999999999666689999999988


Q ss_pred             C-CEEEccCCCCCc-cchhhhccchhccccCcCccCc-CCC--CCCCCC-----------CcccchhhhccccccceEEE
Q 017975          234 L-HHLDLSSTKVRG-LPQELKALVLRMLHCGSNHWPI-AEE--GNVLSD-----------DAESLMKEIHCLEQLNLIAL  297 (363)
Q Consensus       234 L-~~L~l~~~~l~~-lP~~i~~L~L~~L~~~~~~l~~-lp~--~~l~~l-----------~~~~~l~~l~~L~~L~l~~~  297 (363)
                      + +++++++|+++. .|..+..+....+++..+.... +|.  .++.++           ..+..+..+++|+.|++++|
T Consensus       175 l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N  254 (313)
T d1ogqa_         175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN  254 (313)
T ss_dssp             TCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCccC
Confidence            6 889999998886 4667777763345555444332 222  222222           23456778899999999999


Q ss_pred             EeccCcccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCC
Q 017975          298 SLRGSRGVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLED  354 (363)
Q Consensus       298 ~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~  354 (363)
                      .+.+..| +.++.++++    ++|++++|+.... ++.++++++|+.+++++|+.+.
T Consensus       255 ~l~g~iP-~~l~~L~~L----~~L~Ls~N~l~g~-iP~~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         255 RIYGTLP-QGLTQLKFL----HSLNVSFNNLCGE-IPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             CCEECCC-GGGGGCTTC----CEEECCSSEEEEE-CCCSTTGGGSCGGGTCSSSEEE
T ss_pred             eecccCC-hHHhCCCCC----CEEECcCCccccc-CCCcccCCCCCHHHhCCCcccc
Confidence            9987776 567888877    9999999864322 3467889999999999998654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.49  E-value=2.1e-14  Score=117.86  Aligned_cols=169  Identities=15%  Similarity=0.197  Sum_probs=86.6

Q ss_pred             EEEeecccccccCCCCCCCCccEEEeccCCccc-cchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCC
Q 017975          166 RISLMENEIQSLPQIPTCPRLQTLLLEYNHIEE-ITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKV  244 (363)
Q Consensus       166 ~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l  244 (363)
                      .++.++++++.+|.-- .+++++|++++|.++. +++..|.++++|+.|++++|......+..+..+++|++|++++|++
T Consensus        12 ~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l   90 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             EEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             EEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccc
Confidence            3445555555554311 1455666666666543 3344455566666666666633333444555566666666666666


Q ss_pred             Cccch-hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheee
Q 017975          245 RGLPQ-ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALH  322 (363)
Q Consensus       245 ~~lP~-~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~  322 (363)
                      +.+|+ .+..+. |+.|+++.|+++.+|.         ..+..+++|++|++.+|.+.......      .+...++.+.
T Consensus        91 ~~l~~~~F~~l~~L~~L~L~~N~l~~i~~---------~~f~~l~~L~~l~L~~N~~~~~~~~~------~~~~~l~~~~  155 (192)
T d1w8aa_          91 KEISNKMFLGLHQLKTLNLYDNQISCVMP---------GSFEHLNSLTSLNLASNPFNCNCHLA------WFAEWLRKKS  155 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECT---------TSSTTCTTCCEEECTTCCBCCSGGGH------HHHHHHHHHC
T ss_pred             cccCHHHHhCCCcccccccCCccccccCH---------HHhcCCcccccccccccccccccchH------HHhhhhhhhc
Confidence            66544 345555 6666666666655552         34555666666666666554432211      1222234444


Q ss_pred             ecccCCCCcCCcccccccccceeeeccCCCC
Q 017975          323 IKDCNSLPLNLLHLANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       323 l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l  353 (363)
                      +..+......|.   .++.++.++++.+.+.
T Consensus       156 l~~~~~~c~~p~---~l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         156 LNGGAARCGAPS---KVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             CSGGGCBBCSST---TTTTSBGGGSCTTTCC
T ss_pred             ccCCCeEeCCCh---hhcCCEeeecCHhhCc
Confidence            444332222232   3445566677766654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.48  E-value=9.5e-14  Score=122.35  Aligned_cols=190  Identities=18%  Similarity=0.212  Sum_probs=126.8

Q ss_pred             cceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCC
Q 017975          163 GVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSST  242 (363)
Q Consensus       163 ~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~  242 (363)
                      ..+.++-++..++.+|.- -.+++++|++++|.++.+++..|.++++|++|++++|......|..+.++++|++|++++|
T Consensus        11 ~~~~~~C~~~~L~~lP~~-l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             ETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             cCCEEEecCCCCCccCCC-CCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            456677777788888852 2378999999999999999877999999999999999444444778999999999999999


Q ss_pred             CCCccchhhhccchhccccCcCccCcCCC---CC---CCCC-----------CcccchhhhccccccceEEEEeccCc--
Q 017975          243 KVRGLPQELKALVLRMLHCGSNHWPIAEE---GN---VLSD-----------DAESLMKEIHCLEQLNLIALSLRGSR--  303 (363)
Q Consensus       243 ~l~~lP~~i~~L~L~~L~~~~~~l~~lp~---~~---l~~l-----------~~~~~l~~l~~L~~L~l~~~~~~~~~--  303 (363)
                      +++.+|..+.. .+..|+...|.+..++.   ..   ...+           ..+..+..+++|+.+++.++.+....  
T Consensus        90 ~l~~l~~~~~~-~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~  168 (305)
T d1xkua_          90 QLKELPEKMPK-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG  168 (305)
T ss_dssp             CCSBCCSSCCT-TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS
T ss_pred             ccCcCccchhh-hhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc
Confidence            99999876432 15555556666666553   00   0000           22233445555555555555433211  


Q ss_pred             ------------------ccccccCCCchhhhhheeeecccCCCCcCCcccccccccceeeeccCCCCCccccc
Q 017975          304 ------------------GVENFLKFPKLQNITQALHIKDCNSLPLNLLHLANMEHLQLFSIWDSNLEDWNVDC  359 (363)
Q Consensus       304 ------------------~~~~l~~l~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~  359 (363)
                                        ....+..++.    ++.|++++|......+..+.++++|++|++++|.+. .+|+.
T Consensus       169 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~----l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~  237 (305)
T d1xkua_         169 LPPSLTELHLDGNKITKVDAASLKGLNN----LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG  237 (305)
T ss_dssp             CCTTCSEEECTTSCCCEECTGGGTTCTT----CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred             cCCccCEEECCCCcCCCCChhHhhcccc----ccccccccccccccccccccccccceeeeccccccc-ccccc
Confidence                              1122233333    367777776654444566788899999999999654 44543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.3e-13  Score=117.18  Aligned_cols=128  Identities=16%  Similarity=0.266  Sum_probs=96.3

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCC--CCCCCCccEEEeccCCccc-cchHHhcCCCCCCEEEcccCC
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQ--IPTCPRLQTLLLEYNHIEE-ITESFFQSLPSLRVLNLSVNH  219 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~L~~~~  219 (363)
                      ..+.+.+..++.+|.-- .++++.|++++|.++.+|.  +.++++|++|++++|.+.. +++..|.+++.++++.+..+.
T Consensus        11 ~~i~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             SEEEEESCSCSSCCSCS-CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             CEEEEeCCCCCCcCCCC-CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            35666666777776422 2589999999999999875  6889999999999998765 556568899999999988754


Q ss_pred             Ccccc-CccccCCCCCCEEEccCCCCCccch--hhhccc-hhccccCcCccCcCCC
Q 017975          220 YLTEL-PVGISSLVSLHHLDLSSTKVRGLPQ--ELKALV-LRMLHCGSNHWPIAEE  271 (363)
Q Consensus       220 ~~~~l-p~~i~~L~~L~~L~l~~~~l~~lP~--~i~~L~-L~~L~~~~~~l~~lp~  271 (363)
                      .+... |..+.++++|++++++++.+...|.  .+..+. +..+..+++.+..++.
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~  145 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER  145 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECT
T ss_pred             cccccccccccccccccccccchhhhcccccccccccccccccccccccccccccc
Confidence            56554 4567999999999999999987654  334444 5555566666666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.4e-14  Score=110.48  Aligned_cols=129  Identities=17%  Similarity=0.210  Sum_probs=90.8

Q ss_pred             cccccccceEEEeecccccccCCC-CCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccc-cCCCCC
Q 017975          157 KIEEWEGVKRISLMENEIQSLPQI-PTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGI-SSLVSL  234 (363)
Q Consensus       157 ~~~~~~~l~~L~l~~~~~~~l~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i-~~L~~L  234 (363)
                      .+..+.++|.|++++|.++.++.. ..+++|++|++++|.++.++.  +..+++|++|++++| .++.+|..+ ..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNN-RICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccc-cccCCCcccccccccc
Confidence            344445778888888888887764 567788888888888887743  778888888888888 677776554 568888


Q ss_pred             CEEEccCCCCCccch--hhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccce
Q 017975          235 HHLDLSSTKVRGLPQ--ELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNL  294 (363)
Q Consensus       235 ~~L~l~~~~l~~lP~--~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l  294 (363)
                      ++|++++|.++.++.  .+..++ |+.|+++.|.+...|.      ..+..+..+++|+.|+.
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~------~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH------YRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT------HHHHHHHHCTTCSEETT
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccc------hHHHHHHHCCCcCeeCC
Confidence            888888888887764  455666 7787788777766651      01124566666666653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=5.5e-14  Score=106.58  Aligned_cols=103  Identities=23%  Similarity=0.230  Sum_probs=81.8

Q ss_pred             cEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCc
Q 017975          187 QTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNH  265 (363)
Q Consensus       187 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~  265 (363)
                      |+|++++|.++.++.  +.++.+|++|++++| .++.+|+.++.+++|++|++++|.++.+| ++..+. |+.|+++.|+
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc
Confidence            678999999988765  788999999999999 78889888999999999999999999886 477777 8888888888


Q ss_pred             cCcCCCCCCCCCCcccchhhhccccccceEEEEecc
Q 017975          266 WPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRG  301 (363)
Q Consensus       266 l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~  301 (363)
                      ++.+|.        ...+..+++|+.|++.+|.+..
T Consensus        77 i~~~~~--------~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 LQQSAA--------IQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSSST--------TGGGGGCTTCCEEECTTSGGGG
T ss_pred             cCCCCC--------chhhcCCCCCCEEECCCCcCCc
Confidence            877662        1345666677777776665543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.7e-14  Score=112.89  Aligned_cols=117  Identities=20%  Similarity=0.196  Sum_probs=88.6

Q ss_pred             ccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhh
Q 017975          172 NEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQEL  251 (363)
Q Consensus       172 ~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i  251 (363)
                      +-+...|.+.++.+++.|++++|.++.++.. +..+++|++|++++| .++.++ .++.+++|++|++++|.++.+|..+
T Consensus         6 ~~i~~~~~~~n~~~lr~L~L~~n~I~~i~~~-~~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~   82 (162)
T d1a9na_           6 ELIEQAAQYTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNNRICRIGEGL   82 (162)
T ss_dssp             HHHHTSCEEECTTSCEEEECTTSCCCSCCCG-GGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSSCCCEECSCH
T ss_pred             HHHhhhHhccCcCcCcEEECCCCCCCccCcc-ccccccCCEEECCCC-CCCccC-CcccCcchhhhhcccccccCCCccc
Confidence            3445567777888999999999999998753 678999999999999 788886 6899999999999999999988765


Q ss_pred             -hccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEe
Q 017975          252 -KALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSL  299 (363)
Q Consensus       252 -~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~  299 (363)
                       ..+. |+.|+++.|.++.++.        ...+..+++|+.|++.+|.+
T Consensus        83 ~~~l~~L~~L~L~~N~i~~~~~--------l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          83 DQALPDLTELILTNNSLVELGD--------LDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGG--------GGGGGGCTTCCEEECCSSGG
T ss_pred             cccccccccceecccccccccc--------ccccccccccchhhcCCCcc
Confidence             4566 8888888887765541        12344555555555555443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.36  E-value=6.4e-13  Score=108.82  Aligned_cols=124  Identities=22%  Similarity=0.261  Sum_probs=104.5

Q ss_pred             eEEecCCCCCCCccccccccceEEEeecccccc-cC--CCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCC
Q 017975          144 FLVRAGVGLTDAPKIEEWEGVKRISLMENEIQS-LP--QIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHY  220 (363)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-l~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~  220 (363)
                      .+.+.+.+++.+|.-- .+++++|++++|.++. ++  .+..+++|+.|++++|.+..+++..+..+++|++|+|++| .
T Consensus        12 ~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~   89 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-K   89 (192)
T ss_dssp             EEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-C
T ss_pred             EEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-c
Confidence            4667777888887522 3689999999999976 32  3678999999999999999999888999999999999999 6


Q ss_pred             ccccCc-cccCCCCCCEEEccCCCCCccchh-hhccc-hhccccCcCccCcC
Q 017975          221 LTELPV-GISSLVSLHHLDLSSTKVRGLPQE-LKALV-LRMLHCGSNHWPIA  269 (363)
Q Consensus       221 ~~~lp~-~i~~L~~L~~L~l~~~~l~~lP~~-i~~L~-L~~L~~~~~~l~~l  269 (363)
                      ++.+|. .|.++++|++|+|++|.|+.+|++ +..+. |+.++++.|.+...
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence            777754 589999999999999999999765 56777 99999999887544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.30  E-value=2.1e-11  Score=108.66  Aligned_cols=98  Identities=23%  Similarity=0.426  Sum_probs=76.8

Q ss_pred             eeEEecCCCCCCCccccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCcc
Q 017975          143 KFLVRAGVGLTDAPKIEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLT  222 (363)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~  222 (363)
                      ..+...+.+++.+|+.  .+++++|++++|.++.+|..  +.+|+.|++.+|.++.++.  +  .+.|++|++++| .+.
T Consensus        41 ~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L~~n-~l~  111 (353)
T d1jl5a_          41 HELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNN-QLE  111 (353)
T ss_dssp             SEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSS-CCS
T ss_pred             CEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhh--h--cccccccccccc-ccc
Confidence            4566777777777753  46899999999999988864  5689999999998877653  2  246999999999 688


Q ss_pred             ccCccccCCCCCCEEEccCCCCCccchh
Q 017975          223 ELPVGISSLVSLHHLDLSSTKVRGLPQE  250 (363)
Q Consensus       223 ~lp~~i~~L~~L~~L~l~~~~l~~lP~~  250 (363)
                      .+| .++.+++|++|+++++.+...|..
T Consensus       112 ~lp-~~~~l~~L~~L~l~~~~~~~~~~~  138 (353)
T d1jl5a_         112 KLP-ELQNSSFLKIIDVDNNSLKKLPDL  138 (353)
T ss_dssp             SCC-CCTTCTTCCEEECCSSCCSCCCCC
T ss_pred             ccc-chhhhccceeeccccccccccccc
Confidence            888 578899999999998877665543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=9e-14  Score=114.44  Aligned_cols=133  Identities=15%  Similarity=0.191  Sum_probs=90.6

Q ss_pred             ccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCCCCccchhhhccc-hhccccCcCccCcCCCCCC
Q 017975          196 IEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSSTKVRGLPQELKALV-LRMLHCGSNHWPIAEEGNV  274 (363)
Q Consensus       196 l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~~~l  274 (363)
                      +..++.+ +..+++|++|+|++| .++.++ .++.+++|++|++++|.++.+|.....+. |+.|++++|.++.++    
T Consensus        37 i~~l~~s-l~~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~----  109 (198)
T d1m9la_          37 IEKMDAT-LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS----  109 (198)
T ss_dssp             CCCCHHH-HHHTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH----
T ss_pred             hhhhhhH-HhcccccceeECccc-CCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc----
Confidence            3344444 777888888888887 677775 57778888888888888777776555555 777777777776553    


Q ss_pred             CCCCcccchhhhccccccceEEEEeccCcccccccCCCchhhhhheeeecccCCCC--cCCc--------ccccccccce
Q 017975          275 LSDDAESLMKEIHCLEQLNLIALSLRGSRGVENFLKFPKLQNITQALHIKDCNSLP--LNLL--------HLANMEHLQL  344 (363)
Q Consensus       275 ~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~L~~L~l~~~~~~~--~~~~--------~l~~l~~L~~  344 (363)
                             .+..+++|+.|++.+|.+........+..++++    +.|++++|+...  ....        .+..+++|+.
T Consensus       110 -------~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L----~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~  178 (198)
T d1m9la_         110 -------GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL----EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             -------HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTC----SEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCE
T ss_pred             -------cccccccccccccccchhccccccccccCCCcc----ceeecCCCccccCcccccchhhHHHHHHHHCCCcCE
Confidence                   467788888888888887655444456666666    888888875211  1010        1566788888


Q ss_pred             ee
Q 017975          345 FS  346 (363)
Q Consensus       345 L~  346 (363)
                      ||
T Consensus       179 LD  180 (198)
T d1m9la_         179 LD  180 (198)
T ss_dssp             ES
T ss_pred             eC
Confidence            76

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=6.3e-13  Score=115.79  Aligned_cols=179  Identities=21%  Similarity=0.272  Sum_probs=124.7

Q ss_pred             ccccceEEEeecccccc--cCC-CCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccc--cCccccCCCCC
Q 017975          160 EWEGVKRISLMENEIQS--LPQ-IPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTE--LPVGISSLVSL  234 (363)
Q Consensus       160 ~~~~l~~L~l~~~~~~~--l~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~--lp~~i~~L~~L  234 (363)
                      ...++++|+++++.+..  +.. +..+++|++|+++++.+.......+..+++|++|++++|..++.  +..-...+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            34589999999887653  222 57789999999999988765555588999999999999866653  33334578999


Q ss_pred             CEEEccCC-CCCc--cchhhhccc--hhccccCcC--ccCcCCCCCCCCCCcccchhhhccccccceEEEEeccCccccc
Q 017975          235 HHLDLSST-KVRG--LPQELKALV--LRMLHCGSN--HWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGSRGVEN  307 (363)
Q Consensus       235 ~~L~l~~~-~l~~--lP~~i~~L~--L~~L~~~~~--~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  307 (363)
                      ++|++++| .++.  ++..+....  |+.|+++..  .++.        .........+++|++|++.+|...+......
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~--------~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~  195 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK--------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE  195 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH--------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred             cccccccccccccccchhhhcccccccchhhhccccccccc--------ccccccccccccccccccccccCCCchhhhh
Confidence            99999998 5543  334444432  666665532  2211        0122344667899999998775433334455


Q ss_pred             ccCCCchhhhhheeeecccCCCC-cCCcccccccccceeeeccC
Q 017975          308 FLKFPKLQNITQALHIKDCNSLP-LNLLHLANMEHLQLFSIWDS  350 (363)
Q Consensus       308 l~~l~~l~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~c  350 (363)
                      +..++++    ++|++++|..+. ..+..+.++++|+.|+++||
T Consensus       196 l~~~~~L----~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         196 FFQLNYL----QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGCTTC----CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hcccCcC----CEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            6666665    999999998643 33556888999999999998

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.7e-11  Score=102.52  Aligned_cols=106  Identities=15%  Similarity=0.192  Sum_probs=85.5

Q ss_pred             eEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEccC-C
Q 017975          165 KRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP-VGISSLVSLHHLDLSS-T  242 (363)
Q Consensus       165 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~-~  242 (363)
                      +.++.++.+++.+|.-. .+++++|++++|.++.+++..|.++++|++|++++|.....+| ..+..+++++++.+.. +
T Consensus        11 ~~i~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             SEEEEESCSCSSCCSCS-CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             CEEEEeCCCCCCcCCCC-CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            56777888888887521 2589999999999999998879999999999999995555454 4678899999999876 4


Q ss_pred             CCCccch-hhhccc-hhccccCcCccCcCCC
Q 017975          243 KVRGLPQ-ELKALV-LRMLHCGSNHWPIAEE  271 (363)
Q Consensus       243 ~l~~lP~-~i~~L~-L~~L~~~~~~l~~lp~  271 (363)
                      ++..++. .+..+. |+.+++..+.+...+.
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~  120 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPD  120 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCCC
T ss_pred             cccccccccccccccccccccchhhhccccc
Confidence            7777654 567788 9999999998887765

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.19  E-value=5.6e-13  Score=115.50  Aligned_cols=63  Identities=17%  Similarity=0.159  Sum_probs=56.2

Q ss_pred             CccccCCchhHHHHHHHHhcCCCChhHHHHHHHHHhccccccccchHHHHHHHHhhcCCCCChhhhHHHhH
Q 017975            1 MASQCHGLPLALETVGQAMAGKEFPEEWRRAIEIISTSASKFEDMEKKVLSRLKFSYDSLPNDELRSCLLY   71 (363)
Q Consensus         1 Iv~~c~GlPLai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~i~~~L~~sy~~L~~~~lk~cfl~   71 (363)
                      ||++|+|+||||+++|+.|+. ++.++|.+..+.+.+....      +|..++++||++||+ ++|.||-+
T Consensus       214 iv~~c~GlPLAl~~ig~~l~~-k~~~~~~~~~~~L~~~~~~------~v~~il~~sY~~L~~-~lk~c~~~  276 (277)
T d2a5yb3         214 TIELSSGNPATLMMFFKSCEP-KTFEKMAQLNNKLESRGLV------GVECITPYSYKSLAM-ALQRCVEV  276 (277)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCS-SSHHHHHHHHHHHHHHCSS------TTCCCSSSSSSSHHH-HHHHHHHT
T ss_pred             HHHHhCCCHHHHHHHHHHhcc-CCHHHHHHHHHHHhcCcHH------HHHHHHHHHHhcccH-HHHHHHHh
Confidence            689999999999999999988 7889999988888765433      788999999999999 89999976

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=9.6e-14  Score=114.29  Aligned_cols=107  Identities=27%  Similarity=0.327  Sum_probs=62.1

Q ss_pred             ccccccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEE
Q 017975          158 IEEWEGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHL  237 (363)
Q Consensus       158 ~~~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L  237 (363)
                      +..++++++|++++|.++.++.+..+++|++|++++|.++.+++. +..+++|++|++++| .++.++ .+..+++|++|
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L  120 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN-QIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEEECSEE-ECCCHH-HHHHHHHSSEE
T ss_pred             HhcccccceeECcccCCCCcccccCCccccChhhccccccccccc-ccccccccccccccc-cccccc-ccccccccccc
Confidence            444556666666666666666566666666666666666655432 333445666666666 455553 45566666666


Q ss_pred             EccCCCCCccch--hhhccc-hhccccCcCccC
Q 017975          238 DLSSTKVRGLPQ--ELKALV-LRMLHCGSNHWP  267 (363)
Q Consensus       238 ~l~~~~l~~lP~--~i~~L~-L~~L~~~~~~l~  267 (363)
                      ++++|.++.++.  .+..++ |+.|++++|.+.
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccchhccccccccccCCCccceeecCCCccc
Confidence            666666665542  345555 666556555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.6e-10  Score=90.76  Aligned_cols=99  Identities=19%  Similarity=0.214  Sum_probs=59.4

Q ss_pred             EEEeecccccccC-CCCCCCCccEEEeccC-CccccchHHhcCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCC
Q 017975          166 RISLMENEIQSLP-QIPTCPRLQTLLLEYN-HIEEITESFFQSLPSLRVLNLSVNHYLTEL-PVGISSLVSLHHLDLSST  242 (363)
Q Consensus       166 ~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~  242 (363)
                      .++..++.+.+.| .+..+++|+.|++.++ .++.+++..|.++++|+.|++++| .++.+ |..+..+++|++|+|++|
T Consensus        12 ~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceeccCC
Confidence            3444555554443 3455666677777554 466666666667777777777777 55555 344666777777777777


Q ss_pred             CCCccchhhhccc-hhccccCcCc
Q 017975          243 KVRGLPQELKALV-LRMLHCGSNH  265 (363)
Q Consensus       243 ~l~~lP~~i~~L~-L~~L~~~~~~  265 (363)
                      +++.+|.++.... |+.|+++.|.
T Consensus        91 ~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          91 ALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             CCcccChhhhccccccccccCCCc
Confidence            7776666543332 5555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.1e-10  Score=91.68  Aligned_cols=111  Identities=15%  Similarity=0.061  Sum_probs=90.3

Q ss_pred             CCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCc-cccCCCCCCEEEccCCCCCccch-hhhccc-hh
Q 017975          181 PTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSSTKVRGLPQ-ELKALV-LR  257 (363)
Q Consensus       181 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~lP~-~i~~L~-L~  257 (363)
                      ..+.....++..++.+...|.. +..+++|+.|+++++..++.++. .|.++++|+.|++++|+|+.+|+ .+..++ |+
T Consensus         5 C~c~~~~~l~c~~~~~~~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CCcCCCCeEEecCCCCccCccc-ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccc
Confidence            3444566788888888888776 88899999999988867888864 68999999999999999999954 578888 99


Q ss_pred             ccccCcCccCcCCCCCCCCCCcccchhhhccccccceEEEEeccC
Q 017975          258 MLHCGSNHWPIAEEGNVLSDDAESLMKEIHCLEQLNLIALSLRGS  302 (363)
Q Consensus       258 ~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L~~L~l~~~~~~~~  302 (363)
                      .|+++.|+++.+|.          ......+|+.|++.+|.+...
T Consensus        84 ~L~Ls~N~l~~l~~----------~~~~~~~l~~L~L~~Np~~C~  118 (156)
T d2ifga3          84 RLNLSFNALESLSW----------KTVQGLSLQELVLSGNPLHCS  118 (156)
T ss_dssp             EEECCSSCCSCCCS----------TTTCSCCCCEEECCSSCCCCC
T ss_pred             ceeccCCCCcccCh----------hhhccccccccccCCCcccCC
Confidence            99999999999884          333334688999988887543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.00  E-value=1.3e-09  Score=96.77  Aligned_cols=127  Identities=21%  Similarity=0.293  Sum_probs=95.0

Q ss_pred             ccceEEEeecccccccCCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccC
Q 017975          162 EGVKRISLMENEIQSLPQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSS  241 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~  241 (363)
                      .++++|+++++.++.+|+.  .++|++|++++|.++.+|..    +.+|+.|++++| .++.++. +.  +.|++|++++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n-~l~~l~~-lp--~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL----PQSLKSLLVDNN-NLKALSD-LP--PLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSS-CCSCCCS-CC--TTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc----hhhhhhhhhhhc-ccchhhh-hc--cccccccccc
Confidence            4789999999999999864  57999999999999998753    568999999999 6777763 22  4699999999


Q ss_pred             CCCCccchhhhccc-hhccccCcCccCcCCC--CCCCCC-------CcccchhhhccccccceEEEEe
Q 017975          242 TKVRGLPQELKALV-LRMLHCGSNHWPIAEE--GNVLSD-------DAESLMKEIHCLEQLNLIALSL  299 (363)
Q Consensus       242 ~~l~~lP~~i~~L~-L~~L~~~~~~l~~lp~--~~l~~l-------~~~~~l~~l~~L~~L~l~~~~~  299 (363)
                      |.+..+|. ++.++ |+.|+++++.+...|.  ..+..+       .....+..++.++.|.+..+..
T Consensus       108 n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         108 NQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             SCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             cccccccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccc
Confidence            99999985 57788 9999999888877765  222111       2233445555566565554443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=5.6e-10  Score=96.68  Aligned_cols=162  Identities=17%  Similarity=0.112  Sum_probs=107.5

Q ss_pred             CCCCCCccEEEeccCCccc-cchHHhcCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCC-CCCc--cchhhhccc
Q 017975          180 IPTCPRLQTLLLEYNHIEE-ITESFFQSLPSLRVLNLSVNHYLTELPVGISSLVSLHHLDLSST-KVRG--LPQELKALV  255 (363)
Q Consensus       180 ~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~-~l~~--lP~~i~~L~  255 (363)
                      .....+|++|+++++.+.. .....+.++++|++|++++|......+..++.+++|++|++++| .++.  +..-...++
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            3455689999999997753 23455889999999999999544456778999999999999997 6663  333334555


Q ss_pred             -hhccccCc-CccCcCCCCCCCCCCcccchhh-hccccccceEEEEec-cCccccc-ccCCCchhhhhheeeecccCCCC
Q 017975          256 -LRMLHCGS-NHWPIAEEGNVLSDDAESLMKE-IHCLEQLNLIALSLR-GSRGVEN-FLKFPKLQNITQALHIKDCNSLP  330 (363)
Q Consensus       256 -L~~L~~~~-~~l~~lp~~~l~~l~~~~~l~~-l~~L~~L~l~~~~~~-~~~~~~~-l~~l~~l~~~L~~L~l~~~~~~~  330 (363)
                       |+.|++++ ..++.-        .....+.. .++|+.|++.++... ....... ...+++    |++|++++|..+.
T Consensus       122 ~L~~L~ls~c~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~----L~~L~L~~~~~it  189 (284)
T d2astb2         122 RLDELNLSWCFDFTEK--------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN----LVHLDLSDSVMLK  189 (284)
T ss_dssp             TCCEEECCCCTTCCHH--------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT----CSEEECTTCTTCC
T ss_pred             hccccccccccccccc--------cchhhhcccccccchhhhccccccccccccccccccccc----ccccccccccCCC
Confidence             78877764 333210        01122333 357888877654211 1111111 123344    4999999988644


Q ss_pred             -cCCcccccccccceeeeccCCCC
Q 017975          331 -LNLLHLANMEHLQLFSIWDSNLE  353 (363)
Q Consensus       331 -~~~~~l~~l~~L~~L~l~~c~~l  353 (363)
                       ..+..+.++++|++|++++|...
T Consensus       190 d~~~~~l~~~~~L~~L~L~~C~~i  213 (284)
T d2astb2         190 NDCFQEFFQLNYLQHLSLSRCYDI  213 (284)
T ss_dssp             GGGGGGGGGCTTCCEEECTTCTTC
T ss_pred             chhhhhhcccCcCCEEECCCCCCC
Confidence             34567889999999999999754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.28  E-value=1.8e-08  Score=89.38  Aligned_cols=187  Identities=18%  Similarity=0.179  Sum_probs=108.8

Q ss_pred             cccceEEEeecccccccC------CCCCCCCccEEEeccCCccccch-------------HHhcCCCCCCEEEcccCCCc
Q 017975          161 WEGVKRISLMENEIQSLP------QIPTCPRLQTLLLEYNHIEEITE-------------SFFQSLPSLRVLNLSVNHYL  221 (363)
Q Consensus       161 ~~~l~~L~l~~~~~~~l~------~~~~l~~L~~L~l~~~~l~~~~~-------------~~~~~l~~L~~L~L~~~~~~  221 (363)
                      .++++.|++++|.+....      .+...++|+.|++++|.+.....             ......+.|+.++++++ .+
T Consensus        92 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n-~i  170 (344)
T d2ca6a1          92 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RL  170 (344)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CC
T ss_pred             CCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc-cc
Confidence            356788888877665421      13456778888888876532110             01245677888888877 33


Q ss_pred             c-----ccCccccCCCCCCEEEccCCCCCc------cchhhhccc-hhccccCcCccCcCCCCCCCCCCcccchhhhccc
Q 017975          222 T-----ELPVGISSLVSLHHLDLSSTKVRG------LPQELKALV-LRMLHCGSNHWPIAEEGNVLSDDAESLMKEIHCL  289 (363)
Q Consensus       222 ~-----~lp~~i~~L~~L~~L~l~~~~l~~------lP~~i~~L~-L~~L~~~~~~l~~lp~~~l~~l~~~~~l~~l~~L  289 (363)
                      +     .+...+....+|++|++++|.+..      +...+...+ |+.|++++|.+..--.     -.+...+...++|
T Consensus       171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~-----~~L~~~l~~~~~L  245 (344)
T d2ca6a1         171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS-----SALAIALKSWPNL  245 (344)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH-----HHHHHHGGGCTTC
T ss_pred             cccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccc-----ccccccccccccc
Confidence            2     234445667788888888887764      222344444 7777777776432100     0112345667788


Q ss_pred             cccceEEEEeccCcccccccC-CCch-hhhhheeeecccCCCC----cCCcccc-cccccceeeeccCCCCC
Q 017975          290 EQLNLIALSLRGSRGVENFLK-FPKL-QNITQALHIKDCNSLP----LNLLHLA-NMEHLQLFSIWDSNLED  354 (363)
Q Consensus       290 ~~L~l~~~~~~~~~~~~~l~~-l~~l-~~~L~~L~l~~~~~~~----~~~~~l~-~l~~L~~L~l~~c~~l~  354 (363)
                      +.|++.+|.+.+... ..+.. +... ...+++|++++|.--.    .....+. +.++|+.|++++|.+.+
T Consensus       246 ~~L~Ls~n~i~~~g~-~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         246 RELGLNDCLLSARGA-AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CEEECTTCCCCHHHH-HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhhhhcCccCchhh-HHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            888888887654311 11211 1111 1235899999876311    1122342 56789999999998754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.22  E-value=8e-08  Score=85.08  Aligned_cols=66  Identities=15%  Similarity=0.172  Sum_probs=30.3

Q ss_pred             hhhhccccccceEEEEeccCcc---cccccCCCchhhhhheeeecccCCCCcCC----ccccc--ccccceeeeccCCC
Q 017975          283 MKEIHCLEQLNLIALSLRGSRG---VENFLKFPKLQNITQALHIKDCNSLPLNL----LHLAN--MEHLQLFSIWDSNL  352 (363)
Q Consensus       283 l~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~l~~~L~~L~l~~~~~~~~~~----~~l~~--l~~L~~L~l~~c~~  352 (363)
                      +...++|+.|++.+|.+.....   ...+...+++    ++|++++|.--....    ..+..  ...|++|++++|.+
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L----~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i  285 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL----RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  285 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC----CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             hcchhhhcccccccccccccccccccccccccccc----hhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcC
Confidence            4445566666666555432110   0112233333    667777665211101    11222  24567777777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.1e-06  Score=68.70  Aligned_cols=90  Identities=22%  Similarity=0.214  Sum_probs=55.1

Q ss_pred             CCCCCCCCccEEEeccCCccccchHHhcCCCCCCEEEcccCCCccccC---ccccCCCCCCEEEccCCCCCccch--hhh
Q 017975          178 PQIPTCPRLQTLLLEYNHIEEITESFFQSLPSLRVLNLSVNHYLTELP---VGISSLVSLHHLDLSSTKVRGLPQ--ELK  252 (363)
Q Consensus       178 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp---~~i~~L~~L~~L~l~~~~l~~lP~--~i~  252 (363)
                      +.+..+..+..+....+....+ +..+..+++|++|+|++| .++.++   ..+..+++|++|++++|.++.+++  .+.
T Consensus        36 ~~l~~~~~~~~l~~~~~~~~~l-~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~  113 (162)
T d1koha1          36 PDLVAQNIDVVLNRRSSMAATL-RIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK  113 (162)
T ss_dssp             TTTTTTTCCCCTTSHHHHHHHH-HHHHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHT
T ss_pred             chhhhccchhhcchhhhHhhhh-HHHHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccchhhhhhh
Confidence            3333334444444444333222 333567888888888888 566553   446678888888888888888765  122


Q ss_pred             ccchhccccCcCccCcC
Q 017975          253 ALVLRMLHCGSNHWPIA  269 (363)
Q Consensus       253 ~L~L~~L~~~~~~l~~l  269 (363)
                      .+.|+.|++..|.+...
T Consensus       114 ~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1         114 GLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             TCCCSSCCCTTSTTSSS
T ss_pred             ccccceeecCCCCcCcC
Confidence            22277777777776543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.1e-06  Score=79.87  Aligned_cols=105  Identities=23%  Similarity=0.329  Sum_probs=76.2

Q ss_pred             ccceEEEeecccccccC---CCCCCCCccEEEeccCCcccc----chHHhcCCCCCCEEEcccCCCccc-----cCcccc
Q 017975          162 EGVKRISLMENEIQSLP---QIPTCPRLQTLLLEYNHIEEI----TESFFQSLPSLRVLNLSVNHYLTE-----LPVGIS  229 (363)
Q Consensus       162 ~~l~~L~l~~~~~~~l~---~~~~l~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~~~~~~~-----lp~~i~  229 (363)
                      .+++.|+++++++....   -+..++++++|++++|.++..    ....+..+++|++|+|++| .++.     +...+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHh
Confidence            36889999999887631   245678899999999987642    2334688999999999999 4542     233333


Q ss_pred             C-CCCCCEEEccCCCCCc-----cchhhhccc-hhccccCcCccC
Q 017975          230 S-LVSLHHLDLSSTKVRG-----LPQELKALV-LRMLHCGSNHWP  267 (363)
Q Consensus       230 ~-L~~L~~L~l~~~~l~~-----lP~~i~~L~-L~~L~~~~~~l~  267 (363)
                      . ..+|++|++++|.++.     ++..+...+ |+.|+++.|.+.
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            2 3479999999999875     455566666 888888888754

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=7.9e-06  Score=63.59  Aligned_cols=64  Identities=28%  Similarity=0.334  Sum_probs=35.9

Q ss_pred             CCCCccEEEeccCCccccch--HHhcCCCCCCEEEcccCCCccccCc-cccCCCCCCEEEccCCCCCc
Q 017975          182 TCPRLQTLLLEYNHIEEITE--SFFQSLPSLRVLNLSVNHYLTELPV-GISSLVSLHHLDLSSTKVRG  246 (363)
Q Consensus       182 ~l~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~  246 (363)
                      .+++|++|++++|.++.+.+  ..+..+++|++|++++| .++.+++ ......+|+.|++++|.+..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCc
Confidence            45566666666666655432  22455666666666666 5555543 12233456666666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1.3e-05  Score=72.70  Aligned_cols=88  Identities=19%  Similarity=0.253  Sum_probs=66.0

Q ss_pred             ccccccceEEEeeccccccc-----C-CCCCCCCccEEEeccCCccccchHH----hc-CCCCCCEEEcccCCCccc---
Q 017975          158 IEEWEGVKRISLMENEIQSL-----P-QIPTCPRLQTLLLEYNHIEEITESF----FQ-SLPSLRVLNLSVNHYLTE---  223 (363)
Q Consensus       158 ~~~~~~l~~L~l~~~~~~~l-----~-~~~~l~~L~~L~l~~~~l~~~~~~~----~~-~l~~L~~L~L~~~~~~~~---  223 (363)
                      +..+++++.|++.+|.++..     . .+..+++|+.|++++|.++......    +. ...+|++|+|++| .++.   
T Consensus        23 ~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~it~~~~  101 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGC  101 (460)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGH
T ss_pred             HHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCC-Ccccccc
Confidence            34568899999999987642     1 2467899999999999886422111    22 2357999999999 4543   


Q ss_pred             --cCccccCCCCCCEEEccCCCCCc
Q 017975          224 --LPVGISSLVSLHHLDLSSTKVRG  246 (363)
Q Consensus       224 --lp~~i~~L~~L~~L~l~~~~l~~  246 (363)
                        ++..+..+++|++|++++|.+..
T Consensus       102 ~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1         102 GVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             ccccchhhccccccccccccccchh
Confidence              56678899999999999998875

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.61  E-value=0.0053  Score=47.09  Aligned_cols=85  Identities=19%  Similarity=0.268  Sum_probs=48.6

Q ss_pred             ccceEEEeecc-cccc--c----CCCCCCCCccEEEeccCCccc----cchHHhcCCCCCCEEEcccCCCccc-----cC
Q 017975          162 EGVKRISLMEN-EIQS--L----PQIPTCPRLQTLLLEYNHIEE----ITESFFQSLPSLRVLNLSVNHYLTE-----LP  225 (363)
Q Consensus       162 ~~l~~L~l~~~-~~~~--l----~~~~~l~~L~~L~l~~~~l~~----~~~~~~~~l~~L~~L~L~~~~~~~~-----lp  225 (363)
                      +.++.|+++++ .+..  +    ..+...++|++|++++|.+..    .....+...+.|+.|++++| .++.     +-
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~~l~   93 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLL   93 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcchHHHHHHH
Confidence            46777777653 3322  1    124455677777777776542    11223455667777777777 3332     23


Q ss_pred             ccccCCCCCCEEEccCCCCCcc
Q 017975          226 VGISSLVSLHHLDLSSTKVRGL  247 (363)
Q Consensus       226 ~~i~~L~~L~~L~l~~~~l~~l  247 (363)
                      ..+..-+.|++|+++++.+..+
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~  115 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVL  115 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCc
Confidence            3455566677777777655544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.27  E-value=0.0059  Score=46.82  Aligned_cols=84  Identities=11%  Similarity=0.033  Sum_probs=52.6

Q ss_pred             CCCCccEEEeccC-Ccccc----chHHhcCCCCCCEEEcccCCCcc-----ccCccccCCCCCCEEEccCCCCCc-----
Q 017975          182 TCPRLQTLLLEYN-HIEEI----TESFFQSLPSLRVLNLSVNHYLT-----ELPVGISSLVSLHHLDLSSTKVRG-----  246 (363)
Q Consensus       182 ~l~~L~~L~l~~~-~l~~~----~~~~~~~l~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~l~~~~l~~-----  246 (363)
                      +.++|+.|+++++ .+..-    ....+...++|+.|+|++| .++     .+...+...+.|++|++++|.+..     
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            4578999999874 34321    1223677788999999998 443     233445567889999999998764     


Q ss_pred             cchhhhccc-hhccccCcCcc
Q 017975          247 LPQELKALV-LRMLHCGSNHW  266 (363)
Q Consensus       247 lP~~i~~L~-L~~L~~~~~~l  266 (363)
                      +-..+..-+ |+.|++++|..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHHhCCcCCEEECCCCcC
Confidence            111222222 66666655543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.26  E-value=0.028  Score=42.61  Aligned_cols=79  Identities=16%  Similarity=0.193  Sum_probs=39.7

Q ss_pred             ccceEEEeec-ccccc--c----CCCCCCCCccEEEeccCCcccc----chHHhcCCCCCCEEEcccCCCc----cccCc
Q 017975          162 EGVKRISLME-NEIQS--L----PQIPTCPRLQTLLLEYNHIEEI----TESFFQSLPSLRVLNLSVNHYL----TELPV  226 (363)
Q Consensus       162 ~~l~~L~l~~-~~~~~--l----~~~~~l~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~~~~~----~~lp~  226 (363)
                      +.++.|++.+ +.++.  +    ..+...++|+.|++++|.+...    ....+...+.++.+++++|...    ..+-.
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            4566666654 22322  0    1134556677777777655321    1122455566666766666221    12334


Q ss_pred             cccCCCCCCEEEcc
Q 017975          227 GISSLVSLHHLDLS  240 (363)
Q Consensus       227 ~i~~L~~L~~L~l~  240 (363)
                      .+...++|+.++|.
T Consensus        97 ~l~~~~~L~~l~L~  110 (166)
T d1io0a_          97 ALQSNTSLIELRID  110 (166)
T ss_dssp             GGGGCSSCCEEECC
T ss_pred             HHHhCccccEEeec
Confidence            45555666655553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=87.08  E-value=0.18  Score=37.87  Aligned_cols=41  Identities=10%  Similarity=0.112  Sum_probs=19.3

Q ss_pred             hcCCCCCCEEEcccCCCcc-----ccCccccCCCCCCEEEccCCCCC
Q 017975          204 FQSLPSLRVLNLSVNHYLT-----ELPVGISSLVSLHHLDLSSTKVR  245 (363)
Q Consensus       204 ~~~l~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~l~~~~l~  245 (363)
                      +...++|+.|++++| .++     .+-..+....+++.+++++|.+.
T Consensus        42 l~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          42 LKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            345555555555555 222     12223334455555555555443