Citrus Sinensis ID: 017991

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
MKQLKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLLELPHSGSNGTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQVCNPYATCIS
cccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHccccccEEEEccccEEEEEEEEEEccccccEEEEEEEEEEccccccccccccccccEEEEcEEEEEEEEcEEEccccHHHHcccccccccccccccccEEEEEEEEcEEEEEEEEEcccccEEEEEcEEEEEEEEEEEEcccccccccEEcccccccEEEEEcEEEccccEEEEccccEEEEEEEEEEcccccEEEEEcccccccccEEEEEEEcEEEEccccEEEEEEcccccEEEEEEEEEEEEEccccccEEEEEEEccccccccccccccEEEccc
ccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHcccccccccccccccccEEEEHccccccccccccHHHHHHHHHHHHcccccEEEEEccccEEEEEEEEEEccccccEEEEEEEEEEccccHHHcccccccEEEEEEEEcEEEEEEcEEEcccccHHHccccccccccccccccEEEEEEEcccEEEEEEEEEEcccEEEEEEcccEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEEccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEcccccEEEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEccc
mkqlkfcsfsTFFIVLIHVLVCLSAslvstegfdsllelphsgsngtrskskrvifvgdfgakgdgfnddTEAFANAWKKAcsfpartkIVFSAgytflihpidisgpcksrltleisgtivapkdpdvwkglnrrRWLYFNRVNhltvqgggtingmgqewwsrsckinttnpcrhaptaitfhkcknlkvqnlRVVNSQQMHIAFTNCLRVVISNleviapaespntdgihisasrgvevknsivgtgddcisivGNSSLIRirnfacgpghgisigslgksnssvriHDIMVYGALISntqngvriktwqggsgsatnIQFLDVLMKNvsnpiiidqyycdspvpcanqvcnpyatcis
MKQLKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLLELphsgsngtrskskrVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEIsgtivapkdpdvwKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQVCNPYATCIS
MKQLKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLLELPHSGSNGTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQVCNPYATCIS
***LKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLL***************RVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQVCNPYATCI*
********FSTFFIVLIHVLVCLSASLVSTEGF********************VIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCA**VCNPYATCI*
MKQLKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLLELPHSGSNGTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQVCNPYATCIS
*KQLKFCSFSTFFIVLIHVLVCLSASL************************KRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQVCNPYAT***
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKQLKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLLELPHSGSNGTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQVCNPYATCIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query362 2.2.26 [Sep-21-2011]
Q94AJ5444 Probable polygalacturonas yes no 0.886 0.722 0.669 1e-129
P35336467 Polygalacturonase OS=Acti N/A no 0.825 0.640 0.529 2e-90
Q02096462 Polygalacturonase OS=Pers N/A no 0.922 0.722 0.477 3e-90
P48978460 Polygalacturonase OS=Malu N/A no 0.825 0.65 0.516 3e-84
O23147431 Polygalacturonase ADPG1 O no no 0.941 0.791 0.452 3e-84
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.825 0.681 0.508 2e-81
Q8RY29433 Polygalacturonase ADPG2 O no no 0.809 0.676 0.511 3e-81
P05117457 Polygalacturonase-2 OS=So N/A no 0.823 0.652 0.52 1e-79
Q7M1E7 514 Polygalacturonase OS=Cham N/A no 0.856 0.603 0.439 2e-69
P43212 514 Polygalacturonase OS=Cryp N/A no 0.856 0.603 0.429 1e-68
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 Back     alignment and function desciption
 Score =  460 bits (1183), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 215/321 (66%), Positives = 259/321 (80%)

Query: 33  FDSLLELPHSGSNGTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVF 92
           F+SLL+LP   S  TR +S+R++ VG+FGAKG+G  DDT+AFA+AWK ACS   +T+I+ 
Sbjct: 31  FESLLQLPRRQSRSTRPRSERLLHVGNFGAKGNGVTDDTKAFADAWKTACSSKVKTRILV 90

Query: 93  SAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGG 152
              YT L+ PID+SGPCK+RLTL+ISGTI+AP DPDVW+GLNRR+WLYF+ ++ LTV+GG
Sbjct: 91  PENYTCLLRPIDLSGPCKARLTLQISGTIIAPNDPDVWEGLNRRKWLYFHGLSRLTVEGG 150

Query: 153 GTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLR 212
           GT+NGMGQEWW RSCK N +NPCR APTA+TFHKCKN++V+NL V++SQQMHIA T+C R
Sbjct: 151 GTVNGMGQEWWERSCKHNHSNPCRGAPTALTFHKCKNMRVENLNVIDSQQMHIALTSCRR 210

Query: 213 VVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP 272
           V IS L+VIAPA SPNTDGIHIS SRG+ + N+ V TGDDCISIV NS+ I I N  CGP
Sbjct: 211 VTISGLKVIAPATSPNTDGIHISVSRGIVIDNTTVSTGDDCISIVKNSTQISISNIICGP 270

Query: 273 GHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNV 332
           GHGISIGSLGKS S   + DI V  A+IS+T NGVRIKTWQGGSG  + I F ++ M NV
Sbjct: 271 GHGISIGSLGKSKSWEEVRDITVDTAIISDTANGVRIKTWQGGSGLVSKIIFRNIKMNNV 330

Query: 333 SNPIIIDQYYCDSPVPCANQV 353
           SNPIIIDQYYCDS  PCANQ 
Sbjct: 331 SNPIIIDQYYCDSRKPCANQT 351

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2 Back     alignment and function description
>sp|P05117|PGLR_SOLLC Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
122894108445 polygalacturonase [Citrus sinensis] 0.972 0.791 0.997 0.0
317106742443 JHL06P13.19 [Jatropha curcas] 0.966 0.790 0.722 1e-148
255553121424 Polygalacturonase precursor, putative [R 0.903 0.771 0.697 1e-136
224058683447 predicted protein [Populus trichocarpa] 0.922 0.747 0.687 1e-135
356557253443 PREDICTED: probable polygalacturonase At 0.961 0.785 0.633 1e-129
5902387459 Similar to polygalacturonases [Arabidops 0.886 0.699 0.669 1e-127
18412685444 putative polygalacturonase [Arabidopsis 0.886 0.722 0.669 1e-127
297839921444 hypothetical protein ARALYDRAFT_477239 [ 0.892 0.727 0.671 1e-124
357455167451 hypothetical protein MTR_2g103410 [Medic 0.922 0.740 0.633 1e-121
297743417441 unnamed protein product [Vitis vinifera] 0.944 0.775 0.585 1e-120
>gi|122894108|gb|ABM67700.1| polygalacturonase [Citrus sinensis] Back     alignment and taxonomy information
 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/352 (99%), Positives = 352/352 (100%)

Query: 1   MKQLKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLLELPHSGSNGTRSKSKRVIFVGDF 60
           MKQLKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLLELPHSGSNGTRSKSKRVIFVGDF
Sbjct: 1   MKQLKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLLELPHSGSNGTRSKSKRVIFVGDF 60

Query: 61  GAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGT 120
           GAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTL+ISGT
Sbjct: 61  GAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGT 120

Query: 121 IVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPT 180
           IVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPT
Sbjct: 121 IVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPT 180

Query: 181 AITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGV 240
           AITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGV
Sbjct: 181 AITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGV 240

Query: 241 EVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALI 300
           EVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALI
Sbjct: 241 EVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALI 300

Query: 301 SNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQ 352
           SNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQ
Sbjct: 301 SNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQ 352

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|317106742|dbj|BAJ53238.1| JHL06P13.19 [Jatropha curcas] Back     alignment and taxonomy information
>gi|255553121|ref|XP_002517603.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223543235|gb|EEF44767.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224058683|ref|XP_002299601.1| predicted protein [Populus trichocarpa] gi|222846859|gb|EEE84406.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356557253|ref|XP_003546932.1| PREDICTED: probable polygalacturonase At1g80170-like [Glycine max] Back     alignment and taxonomy information
>gi|5902387|gb|AAD55489.1|AC009322_29 Similar to polygalacturonases [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18412685|ref|NP_565232.1| putative polygalacturonase [Arabidopsis thaliana] gi|75332048|sp|Q94AJ5.1|PGLR5_ARATH RecName: Full=Probable polygalacturonase At1g80170; Short=PG; AltName: Full=Pectinase At1g80170; Flags: Precursor gi|15028105|gb|AAK76676.1| putative polygalacturonase [Arabidopsis thaliana] gi|23296942|gb|AAN13206.1| putative polygalacturonase [Arabidopsis thaliana] gi|332198245|gb|AEE36366.1| putative polygalacturonase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297839921|ref|XP_002887842.1| hypothetical protein ARALYDRAFT_477239 [Arabidopsis lyrata subsp. lyrata] gi|297333683|gb|EFH64101.1| hypothetical protein ARALYDRAFT_477239 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357455167|ref|XP_003597864.1| hypothetical protein MTR_2g103410 [Medicago truncatula] gi|87162606|gb|ABD28401.1| Glycoside hydrolase, family 28 [Medicago truncatula] gi|355486912|gb|AES68115.1| hypothetical protein MTR_2g103410 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297743417|emb|CBI36284.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
TAIR|locus:2016314444 AT1G80170 [Arabidopsis thalian 0.944 0.770 0.641 4.6e-121
TAIR|locus:2054396433 PGAZAT "polygalacturonase absc 0.809 0.676 0.511 1.8e-80
TAIR|locus:2028844460 AT1G23460 [Arabidopsis thalian 0.889 0.7 0.457 2.8e-80
TAIR|locus:2077407439 QRT2 "QUARTET 2" [Arabidopsis 0.825 0.681 0.508 6.8e-79
TAIR|locus:2103478431 ADPG1 [Arabidopsis thaliana (t 0.939 0.788 0.456 6.2e-78
TAIR|locus:2026795468 AT1G70500 [Arabidopsis thalian 0.828 0.641 0.471 1e-77
TAIR|locus:2027534434 AT1G56710 [Arabidopsis thalian 0.928 0.774 0.430 3.6e-73
TAIR|locus:2196055491 AT1G02460 [Arabidopsis thalian 0.889 0.655 0.437 1.6e-70
TAIR|locus:2141345468 AT4G01890 [Arabidopsis thalian 0.856 0.662 0.435 1.1e-66
TAIR|locus:2088842470 AT3G26610 [Arabidopsis thalian 0.828 0.638 0.427 2.2e-66
TAIR|locus:2016314 AT1G80170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
 Identities = 220/343 (64%), Positives = 270/343 (78%)

Query:    11 TFFIVLIHVLVCLSASLVST-EGFDSLLELPHSGSNGTRSKSKRVIFVGDFGAKGDGFND 69
             T   +L+ ++V  S +L +    F+SLL+LP   S  TR +S+R++ VG+FGAKG+G  D
Sbjct:     8 TLVTLLLLLVVASSLALTANANSFESLLQLPRRQSRSTRPRSERLLHVGNFGAKGNGVTD 67

Query:    70 DTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDV 129
             DT+AFA+AWK ACS   +T+I+    YT L+ PID+SGPCK+RLTL+ISGTI+AP DPDV
Sbjct:    68 DTKAFADAWKTACSSKVKTRILVPENYTCLLRPIDLSGPCKARLTLQISGTIIAPNDPDV 127

Query:   130 WKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKN 189
             W+GLNRR+WLYF+ ++ LTV+GGGT+NGMGQEWW RSCK N +NPCR APTA+TFHKCKN
Sbjct:   128 WEGLNRRKWLYFHGLSRLTVEGGGTVNGMGQEWWERSCKHNHSNPCRGAPTALTFHKCKN 187

Query:   190 LKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGT 249
             ++V+NL V++SQQMHIA T+C RV IS L+VIAPA SPNTDGIHIS SRG+ + N+ V T
Sbjct:   188 MRVENLNVIDSQQMHIALTSCRRVTISGLKVIAPATSPNTDGIHISVSRGIVIDNTTVST 247

Query:   250 GDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRI 309
             GDDCISIV NS+ I I N  CGPGHGISIGSLGKS S   + DI V  A+IS+T NGVRI
Sbjct:   248 GDDCISIVKNSTQISISNIICGPGHGISIGSLGKSKSWEEVRDITVDTAIISDTANGVRI 307

Query:   310 KTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQ 352
             KTWQGGSG  + I F ++ M NVSNPIIIDQYYCDS  PCANQ
Sbjct:   308 KTWQGGSGLVSKIIFRNIKMNNVSNPIIIDQYYCDSRKPCANQ 350
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2054396 PGAZAT "polygalacturonase abscission zone A. thaliana" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028844 AT1G23460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077407 QRT2 "QUARTET 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103478 ADPG1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026795 AT1G70500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027534 AT1G56710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196055 AT1G02460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141345 AT4G01890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088842 AT3G26610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94AJ5PGLR5_ARATH3, ., 2, ., 1, ., 1, 50.66970.88670.7229yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT1G80170
polygalacturonase, putative / pectinase, putative; polygalacturonase, putative / pectinase, putative; FUNCTIONS IN- polygalacturonase activity; INVOLVED IN- carbohydrate metabolic process; LOCATED IN- plant-type cell wall; EXPRESSED IN- 15 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Pectin lyase fold/virulence factor (InterPro-IPR011050), Pectin lyase fold (InterPro-IPR012334), Glycoside hydrolase, family 28 (InterPro-IPR000743), Parallel beta-helix repeat (InterPro-IPR006626); BEST Arabidopsis thaliana protein match is- polygalacturonase, putative [...] (444 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT2G42860
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (224 aa)
      • 0.929
HEC3
HEC3 (HECATE 3); DNA binding / transcription factor; HECATE 3 (HEC3); FUNCTIONS IN- transcripti [...] (224 aa)
      • 0.659
AT2G43210
UBX domain-containing protein; UBX domain-containing protein; FUNCTIONS IN- molecular_function [...] (531 aa)
      • 0.655
AT1G03230
extracellular dermal glycoprotein, putative / EDGP, putative; extracellular dermal glycoprotein [...] (434 aa)
      • 0.506
anac089
anac089 (Arabidopsis NAC domain containing protein 89); transcription factor; Arabidopsis NAC d [...] (340 aa)
    •   0.462
NLM1
NLM1; arsenite transmembrane transporter/ water channel; an aquaporin whose expression level is [...] (296 aa)
    •   0.462
WIN2
WIN2 (HOPW1-1-INTERACTING 2); protein serine/threonine phosphatase; Encodes HopW1-1-Interacting [...] (311 aa)
      • 0.438
AT3G07950
rhomboid protein-related; rhomboid protein-related; FUNCTIONS IN- molecular_function unknown; I [...] (304 aa)
      • 0.435
AT1G09440
protein kinase family protein; protein kinase family protein; FUNCTIONS IN- protein serine/thre [...] (466 aa)
   •    0.429
QRT3
QRT3 (QUARTET 3); polygalacturonase; Encodes a polygalacturonase that plays a direct role in de [...] (481 aa)
      • 0.408

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 0.0
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 1e-107
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 7e-85
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 5e-80
PLN03003 456 PLN03003, PLN03003, Probable polygalacturonase At3 3e-76
PLN03010409 PLN03010, PLN03010, polygalacturonase 2e-75
PLN02155394 PLN02155, PLN02155, polygalacturonase 3e-69
COG5434 542 COG5434, PGU1, Endopygalactorunase [Cell envelope 1e-26
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 5e-06
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information 
 Score =  580 bits (1497), Expect = 0.0
 Identities = 242/352 (68%), Positives = 285/352 (80%), Gaps = 2/352 (0%)

Query: 1   MKQLKFCSFSTFFIVLIHVLVCLSASLVSTEGFDSLLELPHSGSNGTRSKSKRVIFVGDF 60
           M   +  +     ++L  V+    A + +   F+SLL+LP   S  TR +S+RV+ VGDF
Sbjct: 1   MSYSRGGTEVLCLLLL--VVASSLAFVCNQGSFESLLQLPQRQSARTRPRSERVLHVGDF 58

Query: 61  GAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGT 120
           GAKGDG  DDT+AF  AWK ACS   +T+IV  AGYTFL+ PID+ GPCK++LTL+ISGT
Sbjct: 59  GAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGT 118

Query: 121 IVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPT 180
           I+APKDPDVWKGLN R+WLYF+ VNHLTV+GGGT+NGMG EWW++SCKIN TNPCRHAPT
Sbjct: 119 IIAPKDPDVWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPT 178

Query: 181 AITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGV 240
           AITFHKCK+L+V+NL V++SQQMHIAFTNC RV IS L+VIAPA SPNTDGIHISASRGV
Sbjct: 179 AITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGV 238

Query: 241 EVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALI 300
            +K+SIV TGDDCISIVGNSS I+IRN ACGPGHGISIGSLGKSNS   + DI V GA +
Sbjct: 239 VIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFL 298

Query: 301 SNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQ 352
           SNT NGVRIKTWQGGSG+A+ I F ++ M+NVSNPIIIDQYYCDS  PCANQ
Sbjct: 299 SNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQ 350

Length = 443
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 362
PLN02793443 Probable polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN02155394 polygalacturonase 100.0
PLN03010409 polygalacturonase 100.0
PLN03003 456 Probable polygalacturonase At3g15720 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.95
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.88
PLN02793443 Probable polygalacturonase 99.85
PLN03003456 Probable polygalacturonase At3g15720 99.84
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.83
PLN02218431 polygalacturonase ADPG 99.82
PLN02155394 polygalacturonase 99.81
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.81
PLN03010409 polygalacturonase 99.8
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.73
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.69
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.26
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.23
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.93
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.82
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.73
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.72
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.68
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.65
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.63
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.62
PLN02634359 probable pectinesterase 98.61
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.59
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.59
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.49
PLN02480343 Probable pectinesterase 98.46
PLN02176340 putative pectinesterase 98.45
smart00656190 Amb_all Amb_all domain. 98.43
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 98.4
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.4
PLN02497331 probable pectinesterase 98.38
PLN02682369 pectinesterase family protein 98.37
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.34
PLN02665366 pectinesterase family protein 98.32
PLN02170529 probable pectinesterase/pectinesterase inhibitor 98.27
PRK10531422 acyl-CoA thioesterase; Provisional 98.23
PLN02773317 pectinesterase 98.21
PLN02304379 probable pectinesterase 98.2
PLN02916502 pectinesterase family protein 98.14
PLN02671359 pectinesterase 98.13
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 98.13
smart00656190 Amb_all Amb_all domain. 98.12
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.11
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 98.09
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.08
PLN02506537 putative pectinesterase/pectinesterase inhibitor 98.08
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 98.03
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.98
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.97
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.96
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.95
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.94
PLN02314586 pectinesterase 97.94
PLN02301548 pectinesterase/pectinesterase inhibitor 97.93
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.92
PLN02432293 putative pectinesterase 97.92
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.89
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.88
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.87
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.81
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 97.81
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.8
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 97.79
PLN02197588 pectinesterase 97.73
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.56
PF1221867 End_N_terminal: N terminal extension of bacterioph 97.28
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 96.96
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 96.47
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.83
PLN02480343 Probable pectinesterase 95.73
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 95.51
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 94.99
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 94.4
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 94.36
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 94.19
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 93.86
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 93.78
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 93.76
PLN02197588 pectinesterase 93.7
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 93.31
PLN02432293 putative pectinesterase 93.11
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 92.12
PRK10531422 acyl-CoA thioesterase; Provisional 91.8
PLN02773317 pectinesterase 91.51
PF09251 549 PhageP22-tail: Salmonella phage P22 tail-spike; In 90.6
PLN02671359 pectinesterase 90.35
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 87.72
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 80.6
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=1.4e-72  Score=545.28  Aligned_cols=311  Identities=74%  Similarity=1.252  Sum_probs=290.8

Q ss_pred             CCCCeeEEeeeccccCCCCcchHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCCCC
Q 017991           49 SKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPD  128 (362)
Q Consensus        49 ~~~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~~a~~~~gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~  128 (362)
                      +..+++++|++|||+|||++|||+|||+||++||++.+|++|+||+|++|++++|.|.|||+++++|+++|+|.++.++.
T Consensus        47 ~~~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~  126 (443)
T PLN02793         47 PRSERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPD  126 (443)
T ss_pred             CCCceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChH
Confidence            33568999999999999999999999999997888888899999999669999999999999999999999999999999


Q ss_pred             CcCCCCccccEEEeceeeEEEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCceeEEe
Q 017991          129 VWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFT  208 (362)
Q Consensus       129 ~~~~~~~~~~i~~~~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~  208 (362)
                      .|+....+.|+++.+.+|++|+|.|+|||+|..||...++.+...++..||++|.|.+|+|++|++++++|+|.|++++.
T Consensus       127 ~w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~  206 (443)
T PLN02793        127 VWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFT  206 (443)
T ss_pred             HccCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEE
Confidence            99876677899999999999999999999999999865444444455679999999999999999999999999999999


Q ss_pred             ceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCCCcc
Q 017991          209 NCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSV  288 (362)
Q Consensus       209 ~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~~  288 (362)
                      .|+||+|+|++|.++..++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|.++||++|||+|+.++.+
T Consensus       207 ~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~  286 (443)
T PLN02793        207 NCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWS  286 (443)
T ss_pred             ccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCC
Confidence            99999999999999988899999999999999999999999999999999999999999999999999999999887778


Q ss_pred             cEEeEEEEcEEEeCCceeEEEEeeCCCCceEEeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceeee
Q 017991          289 RIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQVCNPYAT  359 (362)
Q Consensus       289 ~v~ni~i~n~~i~~~~~gi~i~~~~g~~g~i~ni~~~ni~~~~~~~~i~i~~~y~~~~~~c~~~~~~~~~~  359 (362)
                      .|+||+|+|++|.++.+|+|||+|++++|.|+||+|+||+|+++++||.|+|+||+...+|.+++++|.+.
T Consensus       287 ~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~  357 (443)
T PLN02793        287 EVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVE  357 (443)
T ss_pred             cEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999878999888877654

>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 1e-21
1nhc_A336 Structural Insights Into The Processivity Of Endopo 1e-14
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 3e-14
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 2e-13
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 3e-13
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 4e-13
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 2e-11
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 2e-07
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 18/207 (8%)
Query: 149 VQGGGTINGMGQ--------EWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNS 200
           + G GTI+G G          WW  +         ++ P  I  +K KN  + N+ ++NS
Sbjct: 113 IYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINS 172
Query: 201 QQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNS 260
              H+ F++          +  P+ + NTDGI   +S+ + +  S + TGDD ++I    
Sbjct: 173 PNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYK 232
Query: 261 SLIRIRNFAC-----GPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGG 315
                RN +      G GHG+SIGS      ++ ++++ V    ++ T NG+RIK+ +  
Sbjct: 233 GRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKSDKSA 287
Query: 316 SGSATNIQFLDVLMKNVSNPIIIDQYY 342
           +G    +++ +V+MKNV+ PI+ID  Y
Sbjct: 288 AGVVNGVRYSNVVMKNVAKPIVIDTVY 314
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-102
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 2e-99
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 4e-94
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 1e-87
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 1e-85
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 1e-84
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 4e-84
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 1e-83
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 2e-78
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 7e-77
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 4e-32
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 2e-31
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 1e-29
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 1e-19
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 3e-16
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 4e-13
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 7e-09
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 3e-06
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
 Score =  304 bits (781), Expect = e-102
 Identities = 75/336 (22%), Positives = 136/336 (40%), Gaps = 38/336 (11%)

Query: 47  TRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDIS 106
           +R+ S+          K D  +  T     A    C      ++   +   FL  P+ + 
Sbjct: 3   SRTVSEPKTPSSCTTLKADS-STATSTIQKALN-NCDQGKAVRLSAGSTSVFLSGPLSL- 59

Query: 107 GPCKSRLTLEISG--TIVAPKDPDVW------------KGLNRRRWLYFNRVNHLTVQGG 152
               S ++L I    T+ A  +   +             G     ++      +  + G 
Sbjct: 60  ---PSGVSLLIDKGVTLRAVNNAKSFENAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGP 116

Query: 153 GTINGMGQ--------EWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMH 204
           GTI+G G          WW  +         ++ P  I  +K KN  + N+ ++NS   H
Sbjct: 117 GTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFH 176

Query: 205 IAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGN----- 259
           + F++          +  P+ + NTDGI   +S+ + +  S + TGDD ++I        
Sbjct: 177 VVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAE 236

Query: 260 SSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSA 319
           +  I I +   G GHG+SIGS         ++++ V    ++ T NG+RIK+ +  +G  
Sbjct: 237 TRNISILHNDFGTGHGMSIGSETMG-----VYNVTVDDLKMNGTTNGLRIKSDKSAAGVV 291

Query: 320 TNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQVCN 355
             +++ +V+MKNV+ PI+ID  Y            +
Sbjct: 292 NGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVPDWSD 327
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.98
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.91
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.87
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.86
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.85
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.83
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.82
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.82
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.82
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.81
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.76
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.76
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.76
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.72
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.64
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.34
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.3
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.29
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.28
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.28
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.27
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.24
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.15
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.8
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.8
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.77
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.76
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.74
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.61
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.59
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.54
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.53
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.52
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.46
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.42
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.41
2inu_A 410 Insulin fructotransferase; right-handed parallel b 98.33
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.31
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.28
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.25
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.22
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.15
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.14
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 98.08
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.01
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.99
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.97
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.91
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.89
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.87
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.79
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 97.74
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 97.31
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.21
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.97
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 96.82
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.75
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.66
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 96.5
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 95.71
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.41
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 94.58
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 93.93
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 93.58
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 89.18
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 87.69
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 83.29
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=3.9e-60  Score=461.79  Aligned_cols=287  Identities=28%  Similarity=0.468  Sum_probs=256.8

Q ss_pred             CCCCCCeeEEeeeccccCCCCcchHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCC
Q 017991           47 TRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKD  126 (362)
Q Consensus        47 ~~~~~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~~a~~~~gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~  126 (362)
                      ++..++.+++|++|||+|||++|||+|||+||++ |++.++++|+||+| +|++++|.|    +++++|+++|+|+++++
T Consensus        20 ~p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~-c~~~ggg~v~vP~G-~yl~~~l~l----~s~v~l~l~gtL~~s~d   93 (448)
T 3jur_A           20 EPQIPDREVNLLDFGARGDGRTDCSESFKRAIEE-LSKQGGGRLIVPEG-VFLTGPIHL----KSNIELHVKGTIKFIPD   93 (448)
T ss_dssp             CCCCCSCEEEGGGGTCCCEEEEECHHHHHHHHHH-HHHHTCEEEEECSS-EEEESCEEC----CTTEEEEESSEEEECCC
T ss_pred             CCCCCCcEEEEEecccCCCCCeecHHHHHHHHHh-hhhcCCeEEEECCC-cEEEeeeEe----CCCcEEEEEEEEEecCC
Confidence            4455678999999999999999999999999995 55556799999999 999999999    89999999999999999


Q ss_pred             CCCcCCC-----------CccccEEEeceeeEEEEeccEEecCC--CeeeecccccCC----------------------
Q 017991          127 PDVWKGL-----------NRRRWLYFNRVNHLTVQGGGTINGMG--QEWWSRSCKINT----------------------  171 (362)
Q Consensus       127 ~~~~~~~-----------~~~~~i~~~~~~ni~I~G~G~idG~G--~~~~~~~~~~~~----------------------  171 (362)
                      +.+|...           ...+||++.+++|++|+|.|+|||+|  ..||........                      
T Consensus        94 ~~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  173 (448)
T 3jur_A           94 PERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAER  173 (448)
T ss_dssp             GGGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHHH
T ss_pred             HHHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhcc
Confidence            9888321           13468999999999999999999999  899974321000                      


Q ss_pred             ---------CCCCCCCCeEEEEEeecceEEEceEEeeCCCceeEEeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEE
Q 017991          172 ---------TNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEV  242 (362)
Q Consensus       172 ---------~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I  242 (362)
                               ......||++|.|.+|+|++|++++++|+|.|++++..|+||+|+|++|.++  ++|+|||++.+|+||+|
T Consensus       174 ~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I  251 (448)
T 3jur_A          174 GTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLI  251 (448)
T ss_dssp             TCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEE
T ss_pred             cCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEE
Confidence                     0123579999999999999999999999999999999999999999999996  58999999999999999


Q ss_pred             EeeEEecCCccEEEcCC-----------ceeEEEEeeEE--cCCc-eeEEeecCCCCCcccEEeEEEEcEEEeCCceeEE
Q 017991          243 KNSIVGTGDDCISIVGN-----------SSLIRIRNFAC--GPGH-GISIGSLGKSNSSVRIHDIMVYGALISNTQNGVR  308 (362)
Q Consensus       243 ~n~~i~~gdD~i~i~s~-----------~~ni~i~n~~~--~~~~-gi~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~  308 (362)
                      +||+|.++||||+++++           ++||+|+||+|  ..+| |++|||+    ..+.++||+|+||++.++.+|++
T Consensus       252 ~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~----~~~~v~nV~v~n~~~~~t~~Gir  327 (448)
T 3jur_A          252 EKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSE----MSGGVRNVVARNNVYMNVERALR  327 (448)
T ss_dssp             ESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSS----CTTCEEEEEEESCEEESCSEEEE
T ss_pred             EeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCc----ccCcEEEEEEEEEEEecccceEE
Confidence            99999999999999997           89999999999  6677 8999995    56789999999999999999999


Q ss_pred             EEeeCCCCceEEeEEEEeEEEecCCccE-EEEeeeCCC
Q 017991          309 IKTWQGGSGSATNIQFLDVLMKNVSNPI-IIDQYYCDS  345 (362)
Q Consensus       309 i~~~~g~~g~i~ni~~~ni~~~~~~~~i-~i~~~y~~~  345 (362)
                      ||++.+++|.|+||+|+||+|.++++|+ .|+++|+..
T Consensus       328 IKt~~g~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~  365 (448)
T 3jur_A          328 LKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNE  365 (448)
T ss_dssp             EECCTTTCSEEEEEEEESCEEEEESSEEEEEESCGGGC
T ss_pred             EEEEcCCCceEeeEEEEEEEEECCccccEEEEeeccCC
Confidence            9999988899999999999999999988 999999875
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 362
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 5e-62
d1rmga_ 422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 3e-61
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 6e-57
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-53
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 7e-49
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 7e-48
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 3e-46
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 5e-43
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

 Score =  201 bits (511), Expect = 5e-62
 Identities = 34/312 (10%), Positives = 82/312 (26%), Gaps = 25/312 (8%)

Query: 60  FGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISG 119
            G       D+T+           + A++ + F  G  + ++             L  + 
Sbjct: 3   SGMIPHMTPDNTQTMTPGPINNGDWGAKSILYFPPG-VYWMNQDQSGNSG----KLGSNH 57

Query: 120 TIVAPKDPDVW--KGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRS----CKINTTN 173
             +      V+   G   +  + +    +    G G ++G    + + +      + + +
Sbjct: 58  IRLNSNTYWVYLAPGAYVKGAIEYFTKQNFYATGHGILSGENYVYQANAGDNYIAVKSDS 117

Query: 174 PCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEV-IAPAESPNTDGI 232
                         +        +       + F     +     +     A    TDG 
Sbjct: 118 TSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQTDGP 177

Query: 233 HISASRGVEVKNSIVGTGDDCISIVGNSSLIR-IRNFACGPGHGISIGSLGKSNSSVRIH 291
            I       V +      DD I I  + + +     + C     I +G   +  S V I 
Sbjct: 178 EIY--PNSVVHDVFWHVNDDAIKIYYSGASVSRATIWKCHNDPIIQMGWTSRDISGVTID 235

Query: 292 DIMVYGALISNTQNGV----------RIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQY 341
            + V       ++  V                  S  + ++   +V+ + +   +     
Sbjct: 236 TLNVIHTRYIKSETVVPSAIIGASPFYASGMSPDSRKSISMTVSNVVCEGLCPSLFRITP 295

Query: 342 YCDSPVPCANQV 353
             +        V
Sbjct: 296 LQNYKNFVVKNV 307
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.82
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.81
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.8
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.77
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.76
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.75
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.67
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.6
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.58
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.76
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.61
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.43
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.41
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 98.31
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 98.06
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.98
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.91
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.86
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.79
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.78
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.76
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.44
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.42
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.11
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.0
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 96.49
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.71
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 94.99
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 94.54
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 94.51
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 90.63
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 86.17
d1v0ea1 516 Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 84.48
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 83.38
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=2.6e-53  Score=409.86  Aligned_cols=275  Identities=17%  Similarity=0.328  Sum_probs=241.6

Q ss_pred             CCeeEEeeeccccCCCCcchHHHHHHHHHHHcCCCCCcEEEEcCCcEEEe-eeeeccCCCCCCceEEEEeEEECCCCCCC
Q 017991           51 SKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLI-HPIDISGPCKSRLTLEISGTIVAPKDPDV  129 (362)
Q Consensus        51 ~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~~a~~~~gg~~v~~P~G~~Y~i-~~l~l~~~~~s~v~l~~~G~i~~~~~~~~  129 (362)
                      ..+++||+||||+|||++|||+|||+||+ ||+.  |++|+||+| +|++ ++|.|++  .++++|+++|+|.++.....
T Consensus        17 ~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~~--gg~V~iP~G-ty~l~~~i~l~g--~~~~~l~~~G~i~~~~~~~~   90 (422)
T d1rmga_          17 ATKTCNILSYGAVADNSTDVGPAITSAWA-ACKS--GGLVYIPSG-NYALNTWVTLTG--GSATAIQLDGIIYRTGTASG   90 (422)
T ss_dssp             HHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHTB--TCEEEECSS-EEEECSCEEEES--CEEEEEEECSEEEECCCCSS
T ss_pred             CCcEEEEecCCCCCCCCccCHHHHHHHHH-hcCC--CCEEEECCC-cEEEeCcEEEcC--CCceEEEEeEEEEeccCCcc
Confidence            46799999999999999999999999998 6764  789999999 9877 5799988  67889999999988765443


Q ss_pred             cCCCCccccEEEeceeeEEEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCceeEEec
Q 017991          130 WKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTN  209 (362)
Q Consensus       130 ~~~~~~~~~i~~~~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~  209 (362)
                      +.    ..+....+.+.+.+.|.|+|||+|..||...         ..+|++++|.+|+|++|++++++|++.|++.+..
T Consensus        91 ~~----~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~---------~~~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~  157 (422)
T d1rmga_          91 NM----IAVTDTTDFELFSSTSKGAVQGFGYVYHAEG---------TYGARILRLTDVTHFSVHDIILVDAPAFHFTMDT  157 (422)
T ss_dssp             EE----EEEEEEEEEEEECSSSCCEEECCTHHHHTTT---------CCCCEEEEEEEEEEEEEEEEEEECCSSCSEEEEE
T ss_pred             CE----EEeccCccEEEEEeecceEEecCcceecCCC---------CCCCcEEEEEeeeeeEEECcEecCCCceEEEEec
Confidence            21    1233445556667788999999999999732         5688999999999999999999999999999999


Q ss_pred             eeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCCCccc
Q 017991          210 CLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVR  289 (362)
Q Consensus       210 ~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~  289 (362)
                      |++++|+|++|.++ ..+|+||||+.++ ||+|+||+|.++||||+++++++||+|+|++|..+||++||++|+   ...
T Consensus       158 c~~v~i~nv~I~~~-~~~NtDGIdi~~s-nv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~---~~~  232 (422)
T d1rmga_         158 CSDGEVYNMAIRGG-NEGGLDGIDVWGS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTD  232 (422)
T ss_dssp             EEEEEEEEEEEECC-SSTTCCSEEEEEE-EEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECT---TEE
T ss_pred             cccEEEEeeEEcCC-CCCccceEeeccc-EEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccC---CCC
Confidence            99999999999986 4579999999765 899999999999999999999999999999999999999999864   457


Q ss_pred             EEeEEEEcEEEeCCceeEEEEeeCCCCceEEeEEEEeEEEecCCccEEEEeeeCCCCCCCC
Q 017991          290 IHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCA  350 (362)
Q Consensus       290 v~ni~i~n~~i~~~~~gi~i~~~~g~~g~i~ni~~~ni~~~~~~~~i~i~~~y~~~~~~c~  350 (362)
                      ++||+|+|+++.++..|++||++.+ .|.|+||+|+||+|+++++||.|+|+|++...++.
T Consensus       233 V~nV~v~n~~~~~s~~g~~ik~~~g-~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~~~  292 (422)
T d1rmga_         233 VTDIVYRNVYTWSSNQMYMIKSNGG-SGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAG  292 (422)
T ss_dssp             EEEEEEEEEEEESSSCSEEEEEBBC-CEEEEEEEEEEEEEEEESCSEEEETBCTTSCCBSS
T ss_pred             EEEEEEEeEEEeCCCceEEEEEcCC-CceecceEEEEEEEecccccEEEecccCCCCCCCC
Confidence            9999999999999999999998654 58999999999999999999999999998765443
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure