Citrus Sinensis ID: 017997
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 362 | 2.2.26 [Sep-21-2011] | |||||||
| Q96558 | 480 | UDP-glucose 6-dehydrogena | yes | no | 0.972 | 0.733 | 0.948 | 0.0 | |
| Q9LIA8 | 480 | Probable UDP-glucose 6-de | no | no | 0.988 | 0.745 | 0.907 | 0.0 | |
| Q9FM01 | 480 | Probable UDP-glucose 6-de | no | no | 0.972 | 0.733 | 0.906 | 0.0 | |
| O02373 | 476 | UDP-glucose 6-dehydrogena | yes | no | 0.955 | 0.726 | 0.708 | 1e-145 | |
| Q5F3T9 | 494 | UDP-glucose 6-dehydrogena | yes | no | 0.953 | 0.698 | 0.696 | 1e-144 | |
| O70475 | 493 | UDP-glucose 6-dehydrogena | yes | no | 0.953 | 0.699 | 0.699 | 1e-143 | |
| O60701 | 494 | UDP-glucose 6-dehydrogena | yes | no | 0.953 | 0.698 | 0.699 | 1e-143 | |
| P12378 | 494 | UDP-glucose 6-dehydrogena | yes | no | 0.953 | 0.698 | 0.699 | 1e-143 | |
| O70199 | 493 | UDP-glucose 6-dehydrogena | yes | no | 0.953 | 0.699 | 0.690 | 1e-142 | |
| Q5R7B3 | 494 | UDP-glucose 6-dehydrogena | yes | no | 0.953 | 0.698 | 0.696 | 1e-142 |
| >sp|Q96558|UGDH_SOYBN UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/352 (94%), Positives = 343/352 (97%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS SRI AWNSDQLPIYEPGLDGVVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEGQKA++ LKDVYA WVPE+RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQTLKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GANV QV+++VGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GANVQQVSYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHG 352
KINDYQKSRFVNRVVASMFNTVSNKKIA+LGFAFKKDTGDTRETPAID G
Sbjct: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQG 352
|
Provides UDP-glucuronic acid for hemicellulose precursors. Glycine max (taxid: 3847) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2 |
| >sp|Q9LIA8|UGDH1_ARATH Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/358 (90%), Positives = 342/358 (95%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP +EVAVVDISV RINAWNSD LPIYEPGLD VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPDVEVAVVDISVPRINAWNSDTLPIYEPGLDDVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAV+ LK+VYAHWVPE +I+TTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGFKAVQTLKNVYAHWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+V+QV++AVGTDSRIGPKFLN+SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GADVTQVSYAVGTDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358
KINDYQKSRFVNRVV+SMFN+VSNKKIAVLGFAFKKDTGDTRETPAID G ++
Sbjct: 301 KINDYQKSRFVNRVVSSMFNSVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLEDKA 358
|
Provides UDP-glucuronic acid for hemicellulose precursors. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q9FM01|UGDH2_ARATH Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/352 (90%), Positives = 337/352 (95%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDISV RINAWNSDQLPIYEPGLD +VKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVPRINAWNSDQLPIYEPGLDDIVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKT GLGAGKAADLTYWESAAR+IADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTTGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKIL HNSKGIKFQILSNPEFLAEGTAI DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILMHNSKGIKFQILSNPEFLAEGTAIADLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAV+ LK+VYA+WVPE +I+TTNLWSAELSKLAANAFLAQRISSVNAMSALCE+T
Sbjct: 181 TPEGFKAVQTLKEVYANWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEST 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+V+QV++AVGTDSRIG KFLNASVGFGGSCFQKDILNLVYIC+CNGLPEVAEYWKQVI
Sbjct: 241 GADVTQVSYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICQCNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHG 352
KINDYQK+RFVNR+V+SMFNTVSNKK+A+LGFAFKKDTGDTRETPAID G
Sbjct: 301 KINDYQKNRFVNRIVSSMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKG 352
|
Provides UDP-glucuronic acid for hemicellulose precursors. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|O02373|UGDH_DROME UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=1 SV=1 | Back alignment and function description |
|---|
Score = 514 bits (1325), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/347 (70%), Positives = 292/347 (84%), Gaps = 1/347 (0%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
+K+CCIGAGYVGGPT AV+ALKCP I + +VD S RI WNSD+LPIYEPGLD VVK+C
Sbjct: 1 MKVCCIGAGYVGGPTCAVMALKCPDIVITLVDKSSERIAQWNSDKLPIYEPGLDEVVKKC 60
Query: 62 RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
R NLFFSTD+E + EAD++F+SVNTPTKT G G G+AADL Y ESAAR+IA++++S+K
Sbjct: 61 RNVNLFFSTDIETAIKEADLIFISVNTPTKTCGNGKGRAADLKYVESAARMIAEIAQSNK 120
Query: 122 IVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
IVVEKSTVPV+ AE+I IL N K GI + ILSNPEFLAEGTAI DL N DRVLIGG E
Sbjct: 121 IVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEGTAINDLLNADRVLIGGEE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG +AV+ L +Y HW+P+ ILTTN WS+ELSKLAANAFLAQRISS+N++SA+CEAT
Sbjct: 181 TPEGHQAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+VS+VA AVG DSRIG KFL ASVGFGGSCFQKDILNL+YICE LPEVA YW+QVI
Sbjct: 241 GADVSEVARAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIYICENLNLPEVAAYWQQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+N+YQK RF +++ S+FNTVS+K+IA+LGFAFKK+TGDTRET AI
Sbjct: 301 DMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTRETAAI 347
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate and heparan sulfate. Required for wingless signaling in different tissues. Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q5F3T9|UGDH_CHICK UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 510 bits (1313), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/346 (69%), Positives = 290/346 (83%), Gaps = 1/346 (0%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I+V VVD++ +RINAWNSD LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAQMCPKIQVTVVDVNEARINAWNSDTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
G+NLFFST ++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GRNLFFSTSIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ++
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLDLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDDS 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQKAV+AL VY HWVP+++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+GTD RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVARAIGTDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Gallus gallus (taxid: 9031) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|O70475|UGDH_MOUSE UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 508 bits (1309), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/346 (69%), Positives = 288/346 (83%), Gaps = 1/346 (0%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ +RINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQKAV+AL VY HWVP+++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|O60701|UGDH_HUMAN UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1 | Back alignment and function description |
|---|
Score = 508 bits (1308), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/346 (69%), Positives = 287/346 (82%), Gaps = 1/346 (0%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P12378|UGDH_BOVIN UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 508 bits (1307), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/346 (69%), Positives = 286/346 (82%), Gaps = 1/346 (0%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVDI+ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDINESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKL ANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLTANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|O70199|UGDH_RAT UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 504 bits (1299), Expect = e-142, Method: Compositional matrix adjust.
Identities = 239/346 (69%), Positives = 287/346 (82%), Gaps = 1/346 (0%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ +RINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIARMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP+++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCE+TG
Sbjct: 186 PEGQRAVQALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCESTG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGG CFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGGCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q5R7B3|UGDH_PONAB UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 504 bits (1297), Expect = e-142, Method: Compositional matrix adjust.
Identities = 241/346 (69%), Positives = 286/346 (82%), Gaps = 1/346 (0%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA P I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMRPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 362 | ||||||
| 225452968 | 480 | PREDICTED: UDP-glucose 6-dehydrogenase [ | 0.972 | 0.733 | 0.946 | 0.0 | |
| 449438843 | 480 | PREDICTED: UDP-glucose 6-dehydrogenase-l | 0.972 | 0.733 | 0.951 | 0.0 | |
| 356568722 | 480 | PREDICTED: UDP-glucose 6-dehydrogenase-l | 0.972 | 0.733 | 0.948 | 0.0 | |
| 255638733 | 480 | unknown [Glycine max] | 0.972 | 0.733 | 0.948 | 0.0 | |
| 315258127 | 480 | putative uridine diphosphate glucose deh | 0.972 | 0.733 | 0.951 | 0.0 | |
| 351726550 | 480 | UDP-glucose 6-dehydrogenase [Glycine max | 0.972 | 0.733 | 0.948 | 0.0 | |
| 283488489 | 480 | UDP-D-glucose dehydrogenase [Gossypium h | 0.972 | 0.733 | 0.943 | 0.0 | |
| 144926039 | 480 | UDP-glucose dehydrogenase [Eucalyptus gr | 0.972 | 0.733 | 0.934 | 0.0 | |
| 356551148 | 480 | PREDICTED: UDP-glucose 6-dehydrogenase-l | 0.972 | 0.733 | 0.937 | 0.0 | |
| 357502229 | 480 | UDP-glucose dehydrogenase [Medicago trun | 0.972 | 0.733 | 0.940 | 0.0 |
| >gi|225452968|ref|XP_002284346.1| PREDICTED: UDP-glucose 6-dehydrogenase [Vitis vinifera] gi|147778657|emb|CAN62897.1| hypothetical protein VITISV_020300 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/352 (94%), Positives = 346/352 (98%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRI AWNSDQLPIYEPGLDGVVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRITAWNSDQLPIYEPGLDGVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDL PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLLKPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEGQKA++ALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+V+QV++AVGTD+RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GADVTQVSYAVGTDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHG 352
K+NDYQK+RFVNRVV+SMFNTVSNKKIA+LGFAFKKDTGDTRETPAID G
Sbjct: 301 KVNDYQKNRFVNRVVSSMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCKG 352
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438843|ref|XP_004137197.1| PREDICTED: UDP-glucose 6-dehydrogenase-like [Cucumis sativus] gi|449483250|ref|XP_004156534.1| PREDICTED: UDP-glucose 6-dehydrogenase-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/352 (95%), Positives = 346/352 (98%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS+QLPIYEPGLDGVVK+
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSEQLPIYEPGLDGVVKE 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRG+NLFFSTDVEKHVSEADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGRNLFFSTDVEKHVSEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEGQKA+ LK VYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNA+SALCEAT
Sbjct: 181 TPEGQKAISTLKAVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAISALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GANVSQVA++VGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GANVSQVAYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHG 352
KINDYQK+RFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID G
Sbjct: 301 KINDYQKNRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKG 352
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568722|ref|XP_003552559.1| PREDICTED: UDP-glucose 6-dehydrogenase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/352 (94%), Positives = 344/352 (97%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS SRI AWNSDQLPIYEPGLDGVVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGI+FQILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIRFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEGQKA++ALKDVYA WVPE+RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQALKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GANV QV+++VGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GANVQQVSYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHG 352
KINDYQKSRFVNRVVASMFNTVSNKKIA+LGFAFKKDTGDTRETPAID G
Sbjct: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQG 352
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255638733|gb|ACU19671.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/352 (94%), Positives = 344/352 (97%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS SRI AWNSDQLPIYEPGLDGVVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGI+FQILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIRFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEGQKA++ALKDVYA WVPE+RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQALKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GANV QV+++VGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GANVQQVSYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHG 352
KINDYQKSRFVNRVVASMFNTVSNKKIA+LGFAFKKDTGDTRETPAID G
Sbjct: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQG 352
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|315258127|gb|ADT91651.1| putative uridine diphosphate glucose dehydrogenase [Galega orientalis] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/352 (95%), Positives = 343/352 (97%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRI AWNSDQLPIYEPGLD VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRITAWNSDQLPIYEPGLDDVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAV+ALK +YAHWVPE+RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGFKAVQALKSIYAHWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GANV QVA++VGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GANVQQVAYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHG 352
KINDYQKSRFVNRVVASMFNTVSNKKIA+LGFAFKKDTGDTRETPAID G
Sbjct: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQG 352
|
Source: Galega orientalis Species: Galega orientalis Genus: Galega Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351726550|ref|NP_001238410.1| UDP-glucose 6-dehydrogenase [Glycine max] gi|6136119|sp|Q96558.1|UGDH_SOYBN RecName: Full=UDP-glucose 6-dehydrogenase; Short=UDP-Glc dehydrogenase; Short=UDP-GlcDH; Short=UDPGDH gi|1518540|gb|AAB58398.1| UDP-glucose dehydrogenase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/352 (94%), Positives = 343/352 (97%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS SRI AWNSDQLPIYEPGLDGVVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEGQKA++ LKDVYA WVPE+RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQTLKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GANV QV+++VGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GANVQQVSYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHG 352
KINDYQKSRFVNRVVASMFNTVSNKKIA+LGFAFKKDTGDTRETPAID G
Sbjct: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQG 352
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|283488489|gb|ADB24766.1| UDP-D-glucose dehydrogenase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/352 (94%), Positives = 343/352 (97%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV RINAWNSDQLPIYEPGLD VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLDAVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGI FQILSNPEFLAEGTAIQDLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAV+ALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGNKAVQALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+V+QV++AVG D+RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GADVTQVSYAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHG 352
KINDYQK+RFVNRVV+SMFNTVSNKKIA+LGFAFKKDTGDTRETPAID G
Sbjct: 301 KINDYQKNRFVNRVVSSMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCKG 352
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|144926039|gb|ABP04019.1| UDP-glucose dehydrogenase [Eucalyptus grandis] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/352 (93%), Positives = 343/352 (97%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPS+EVAVVDISVSRI AWNS+QLPIYEPGLD VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSVEVAVVDISVSRIQAWNSEQLPIYEPGLDAVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFAPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEGQKA++ LKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMS+LCEAT
Sbjct: 181 TPEGQKAIQTLKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSSLCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+V+QV++AVG DSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GADVAQVSYAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHG 352
KINDYQK+RFVNRVV+SMFNTVSNKKIA+LGFAFKKDTGDTRETPAID G
Sbjct: 301 KINDYQKARFVNRVVSSMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCKG 352
|
Source: Eucalyptus grandis Species: Eucalyptus grandis Genus: Eucalyptus Family: Myrtaceae Order: Myrtales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356551148|ref|XP_003543940.1| PREDICTED: UDP-glucose 6-dehydrogenase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/352 (93%), Positives = 342/352 (97%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS SRI AWNSDQLPIYEPGLDGVVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVYEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHN KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNGKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEGQKA++ LKDVYAHWVPE RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQTLKDVYAHWVPEGRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GANV+QV++AVGTD+RIGPKFLN+SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GANVTQVSYAVGTDTRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHG 352
KINDYQKSRFVNRVV+SMFNTV+ KKIA+LGFAFKKDTGDTRETPAID G
Sbjct: 301 KINDYQKSRFVNRVVSSMFNTVATKKIAILGFAFKKDTGDTRETPAIDVCKG 352
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357502229|ref|XP_003621403.1| UDP-glucose dehydrogenase [Medicago truncatula] gi|355496418|gb|AES77621.1| UDP-glucose dehydrogenase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/352 (94%), Positives = 339/352 (96%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS RI AWNSD LPIYEPGLD VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKPRIAAWNSDTLPIYEPGLDDVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIRDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAV+ LK VYAHWVPE++ILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGLKAVQTLKSVYAHWVPEEQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GAN+ QVA+AVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GANIQQVAYAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHG 352
KINDYQKSRFVNRVVASMFNTVSNKKIA+LGFAFKKDTGDTRETPAID G
Sbjct: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQG 352
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 362 | ||||||
| TAIR|locus:2180872 | 480 | UGD3 "UDP-glucose dehydrogenas | 0.961 | 0.725 | 0.933 | 1.4e-172 | |
| TAIR|locus:2093827 | 480 | UGD2 "UDP-glucose dehydrogenas | 0.961 | 0.725 | 0.931 | 1.8e-172 | |
| TAIR|locus:2157275 | 480 | UDG4 "UDP-glucose dehydrogenas | 0.961 | 0.725 | 0.913 | 5e-170 | |
| TAIR|locus:2197945 | 481 | UGD1 "UDP-glucose dehydrogenas | 0.961 | 0.723 | 0.885 | 3.3e-166 | |
| FB|FBgn0261445 | 476 | sgl "sugarless" [Drosophila me | 0.955 | 0.726 | 0.708 | 5e-131 | |
| UNIPROTKB|I3LIM2 | 494 | UGDH "UDP-glucose 6-dehydrogen | 0.953 | 0.698 | 0.705 | 1.7e-130 | |
| UNIPROTKB|G1K343 | 421 | UGDH "UDP-glucose 6-dehydrogen | 0.953 | 0.819 | 0.696 | 5.7e-130 | |
| UNIPROTKB|Q5F3T9 | 494 | UGDH "UDP-glucose 6-dehydrogen | 0.953 | 0.698 | 0.696 | 5.7e-130 | |
| MGI|MGI:1306785 | 493 | Ugdh "UDP-glucose dehydrogenas | 0.953 | 0.699 | 0.699 | 1.2e-129 | |
| UNIPROTKB|O60701 | 494 | UGDH "UDP-glucose 6-dehydrogen | 0.953 | 0.698 | 0.699 | 1.5e-129 |
| TAIR|locus:2180872 UGD3 "UDP-glucose dehydrogenase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1677 (595.4 bits), Expect = 1.4e-172, P = 1.4e-172
Identities = 325/348 (93%), Positives = 338/348 (97%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPS+EVAVVDISV RINAWNSDQLPIYEPGLD VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSVEVAVVDISVPRINAWNSDQLPIYEPGLDDVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIEDLFMPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
T EG AVKALKD+YA WVPE+RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TTEGFAAVKALKDIYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GANVS+V++AVG DSRIGPKFLN+SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GANVSEVSYAVGKDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
KINDYQK+RFVNR+V+SMFNTVSNKKIAVLGFAFKKDTGDTRETPAID
Sbjct: 301 KINDYQKTRFVNRIVSSMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
|
|
| TAIR|locus:2093827 UGD2 "UDP-glucose dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1676 (595.0 bits), Expect = 1.8e-172, P = 1.8e-172
Identities = 324/348 (93%), Positives = 339/348 (97%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP +EVAVVDISV RINAWNSD LPIYEPGLD VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPDVEVAVVDISVPRINAWNSDTLPIYEPGLDDVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAV+ LK+VYAHWVPE +I+TTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGFKAVQTLKNVYAHWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+V+QV++AVGTDSRIGPKFLN+SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GADVTQVSYAVGTDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
KINDYQKSRFVNRVV+SMFN+VSNKKIAVLGFAFKKDTGDTRETPAID
Sbjct: 301 KINDYQKSRFVNRVVSSMFNSVSNKKIAVLGFAFKKDTGDTRETPAID 348
|
|
| TAIR|locus:2157275 UDG4 "UDP-glucose dehydrogenase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1653 (586.9 bits), Expect = 5.0e-170, P = 5.0e-170
Identities = 318/348 (91%), Positives = 336/348 (96%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDISV RINAWNSDQLPIYEPGLD +VKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVPRINAWNSDQLPIYEPGLDDIVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKT GLGAGKAADLTYWESAAR+IADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTTGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKIL HNSKGIKFQILSNPEFLAEGTAI DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILMHNSKGIKFQILSNPEFLAEGTAIADLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAV+ LK+VYA+WVPE +I+TTNLWSAELSKLAANAFLAQRISSVNAMSALCE+T
Sbjct: 181 TPEGFKAVQTLKEVYANWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEST 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+V+QV++AVGTDSRIG KFLNASVGFGGSCFQKDILNLVYIC+CNGLPEVAEYWKQVI
Sbjct: 241 GADVTQVSYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICQCNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
KINDYQK+RFVNR+V+SMFNTVSNKK+A+LGFAFKKDTGDTRETPAID
Sbjct: 301 KINDYQKNRFVNRIVSSMFNTVSNKKVAILGFAFKKDTGDTRETPAID 348
|
|
| TAIR|locus:2197945 UGD1 "UDP-glucose dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1617 (574.3 bits), Expect = 3.3e-166, P = 3.3e-166
Identities = 308/348 (88%), Positives = 331/348 (95%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAV+ALKCP IEV VVDIS RINAWNSD+LPIYEPGL+ VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVMALKCPEIEVVVVDISEPRINAWNSDRLPIYEPGLEDVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV E+DIVFVSVNTPTKTQGLGAGKAADLTYWESAAR+IADVSKS
Sbjct: 61 CRGKNLFFSTDVEKHVFESDIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSS 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPV+TAEAIEKILTHNSKGI+FQILSNPEFLAEGTAI+DL+NPDRVLIGGR+
Sbjct: 121 KIVVEKSTVPVRTAEAIEKILTHNSKGIEFQILSNPEFLAEGTAIKDLYNPDRVLIGGRD 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
T GQKA+KAL+DVYAHWVP ++I+ TNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TAAGQKAIKALRDVYAHWVPVEQIICTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+V+QVA AVGTD+RIGPKFLNASVGFGGSCFQKDILNL+YICECNGLPE A YWKQV+
Sbjct: 241 GADVTQVAHAVGTDTRIGPKFLNASVGFGGSCFQKDILNLIYICECNGLPEAANYWKQVV 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
K+NDYQK RF NRVV+SMFNTVS KKIA+LGFAFKKDTGDTRETPAID
Sbjct: 301 KVNDYQKIRFANRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAID 348
|
|
| FB|FBgn0261445 sgl "sugarless" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1285 (457.4 bits), Expect = 5.0e-131, P = 5.0e-131
Identities = 246/347 (70%), Positives = 292/347 (84%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
+K+CCIGAGYVGGPT AV+ALKCP I + +VD S RI WNSD+LPIYEPGLD VVK+C
Sbjct: 1 MKVCCIGAGYVGGPTCAVMALKCPDIVITLVDKSSERIAQWNSDKLPIYEPGLDEVVKKC 60
Query: 62 RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
R NLFFSTD+E + EAD++F+SVNTPTKT G G G+AADL Y ESAAR+IA++++S+K
Sbjct: 61 RNVNLFFSTDIETAIKEADLIFISVNTPTKTCGNGKGRAADLKYVESAARMIAEIAQSNK 120
Query: 122 IVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
IVVEKSTVPV+ AE+I IL N K GI + ILSNPEFLAEGTAI DL N DRVLIGG E
Sbjct: 121 IVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEGTAINDLLNADRVLIGGEE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG +AV+ L +Y HW+P+ ILTTN WS+ELSKLAANAFLAQRISS+N++SA+CEAT
Sbjct: 181 TPEGHQAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+VS+VA AVG DSRIG KFL ASVGFGGSCFQKDILNL+YICE LPEVA YW+QVI
Sbjct: 241 GADVSEVARAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIYICENLNLPEVAAYWQQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+N+YQK RF +++ S+FNTVS+K+IA+LGFAFKK+TGDTRET AI
Sbjct: 301 DMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTRETAAI 347
|
|
| UNIPROTKB|I3LIM2 UGDH "UDP-glucose 6-dehydrogenase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1280 (455.6 bits), Expect = 1.7e-130, P = 1.7e-130
Identities = 244/346 (70%), Positives = 289/346 (83%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIALKCP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIALKCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAIQDL PDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIQDLKYPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP+++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351
|
|
| UNIPROTKB|G1K343 UGDH "UDP-glucose 6-dehydrogenase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1275 (453.9 bits), Expect = 5.7e-130, P = 5.7e-130
Identities = 241/346 (69%), Positives = 290/346 (83%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I+V VVD++ +RINAWNSD LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAQMCPKIQVTVVDVNEARINAWNSDTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
G+NLFFST ++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GRNLFFSTSIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ++
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLDLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDDS 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQKAV+AL VY HWVP+++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+GTD RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVARAIGTDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351
|
|
| UNIPROTKB|Q5F3T9 UGDH "UDP-glucose 6-dehydrogenase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1275 (453.9 bits), Expect = 5.7e-130, P = 5.7e-130
Identities = 241/346 (69%), Positives = 290/346 (83%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I+V VVD++ +RINAWNSD LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAQMCPKIQVTVVDVNEARINAWNSDTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
G+NLFFST ++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GRNLFFSTSIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ++
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLDLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDDS 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQKAV+AL VY HWVP+++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+GTD RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVARAIGTDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351
|
|
| MGI|MGI:1306785 Ugdh "UDP-glucose dehydrogenase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1272 (452.8 bits), Expect = 1.2e-129, P = 1.2e-129
Identities = 242/346 (69%), Positives = 288/346 (83%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ +RINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQKAV+AL VY HWVP+++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351
|
|
| UNIPROTKB|O60701 UGDH "UDP-glucose 6-dehydrogenase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1271 (452.5 bits), Expect = 1.5e-129, P = 1.5e-129
Identities = 242/346 (69%), Positives = 287/346 (82%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q96558 | UGDH_SOYBN | 1, ., 1, ., 1, ., 2, 2 | 0.9488 | 0.9723 | 0.7333 | yes | no |
| Q9LIA8 | UGDH1_ARATH | 1, ., 1, ., 1, ., 2, 2 | 0.9078 | 0.9889 | 0.7458 | no | no |
| O60701 | UGDH_HUMAN | 1, ., 1, ., 1, ., 2, 2 | 0.6994 | 0.9530 | 0.6983 | yes | no |
| Q5F3T9 | UGDH_CHICK | 1, ., 1, ., 1, ., 2, 2 | 0.6965 | 0.9530 | 0.6983 | yes | no |
| P12378 | UGDH_BOVIN | 1, ., 1, ., 1, ., 2, 2 | 0.6994 | 0.9530 | 0.6983 | yes | no |
| Q5R7B3 | UGDH_PONAB | 1, ., 1, ., 1, ., 2, 2 | 0.6965 | 0.9530 | 0.6983 | yes | no |
| Q19905 | UGDH_CAEEL | 1, ., 1, ., 1, ., 2, 2 | 0.6408 | 0.9530 | 0.7172 | yes | no |
| Q9FM01 | UGDH2_ARATH | 1, ., 1, ., 1, ., 2, 2 | 0.9062 | 0.9723 | 0.7333 | no | no |
| O02373 | UGDH_DROME | 1, ., 1, ., 1, ., 2, 2 | 0.7089 | 0.9558 | 0.7268 | yes | no |
| O70475 | UGDH_MOUSE | 1, ., 1, ., 1, ., 2, 2 | 0.6994 | 0.9530 | 0.6997 | yes | no |
| O70199 | UGDH_RAT | 1, ., 1, ., 1, ., 2, 2 | 0.6907 | 0.9530 | 0.6997 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00021053001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (459 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00026410001 | SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (418 aa) | • | • | • | 0.931 | ||||||
| GSVIVG00031642001 | SubName- Full=Chromosome chr5 scaffold_58, whole genome shotgun sequence; (451 aa) | • | • | • | 0.921 | ||||||
| GSVIVG00034877001 | SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (465 aa) | • | • | 0.920 | |||||||
| GSVIVG00006740001 | SubName- Full=Putative uncharacterized protein (Chromosome chr2 scaffold_176, whole genome shot [...] (348 aa) | • | • | • | 0.919 | ||||||
| GSVIVG00006742001 | SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (349 aa) | • | • | • | 0.918 | ||||||
| GSVIVG00000750001 | SubName- Full=Chromosome undetermined scaffold_107, whole genome shotgun sequence; (657 aa) | • | • | • | 0.918 | ||||||
| GSVIVG00027921001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (675 aa) | • | • | • | 0.917 | ||||||
| GSVIVG00001116001 | SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (350 aa) | • | • | 0.916 | |||||||
| GSVIVG00031253001 | SubName- Full=Chromosome undetermined scaffold_55, whole genome shotgun sequence; (388 aa) | • | • | 0.907 | |||||||
| GSVIVG00022106001 | SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (388 aa) | • | • | 0.907 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 362 | |||
| PLN02353 | 473 | PLN02353, PLN02353, probable UDP-glucose 6-dehydro | 0.0 | |
| COG1004 | 414 | COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenas | 1e-107 | |
| TIGR03026 | 409 | TIGR03026, NDP-sugDHase, nucleotide sugar dehydrog | 1e-91 | |
| pfam03721 | 188 | pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose | 4e-73 | |
| COG0677 | 436 | COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate de | 2e-44 | |
| pfam00984 | 96 | pfam00984, UDPG_MGDP_dh, UDP-glucose/GDP-mannose d | 5e-42 | |
| PRK11064 | 415 | PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydro | 3e-28 | |
| PRK15057 | 388 | PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; P | 3e-24 | |
| PRK15182 | 425 | PRK15182, PRK15182, Vi polysaccharide biosynthesis | 6e-10 | |
| pfam03720 | 103 | pfam03720, UDPG_MGDP_dh_C, UDP-glucose/GDP-mannose | 3e-06 | |
| smart00984 | 99 | smart00984, UDPG_MGDP_dh_C, UDP binding domain | 5e-06 |
| >gnl|CDD|177986 PLN02353, PLN02353, probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Score = 812 bits (2100), Expect = 0.0
Identities = 328/352 (93%), Positives = 340/352 (96%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP IEV VVDISV RI+AWNSDQLPIYEPGLD VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV+EADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGI FQILSNPEFLAEGTAI+DLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEGQKAV+ALKDVYAHWVPE+RI+TTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+VSQV+ AVG DSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GADVSQVSHAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHG 352
K+NDYQKSRFVNRVV+SMFNTVS KKIAVLGFAFKKDTGDTRETPAID G
Sbjct: 301 KMNDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKG 352
|
Length = 473 |
| >gnl|CDD|223936 COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 319 bits (820), Expect = e-107
Identities = 145/348 (41%), Positives = 207/348 (59%), Gaps = 17/348 (4%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KI IG GYVG T A +A EV VDI S++ N PIYEPGL+ ++K+
Sbjct: 2 KITVIGTGYVGLVTGACLAEL--GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENL 59
Query: 63 GKN-LFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
L F+TD E+ V +AD+VF++V TP G +ADL+Y E+ A+ I ++
Sbjct: 60 ASGRLRFTTDYEEAVKDADVVFIAVGTPPDEDG-----SADLSYVEAVAKDIGEILDGKA 114
Query: 122 IVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
+VV KSTVPV T E + + + G F++ SNPEFL EG+A+ D PDR++IG R
Sbjct: 115 VVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSAVYDFLYPDRIVIGVRS- 173
Query: 182 PEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
++A L+++YA ++ +D IL T+L AEL K AANAFLA +IS +N ++ +CE
Sbjct: 174 ---ERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKV 230
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+V QVA +G D RIG FLNA G+GGSCF KD L+ E L + V+
Sbjct: 231 GADVKQVAEGIGLDPRIGNHFLNAGFGYGGSCFPKDTKALIANAE--ELGYDPNLLEAVV 288
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
++N+ +K + +++ + + K IAVLG AFK +T D RE+PA+D
Sbjct: 289 EVNERRKDKLAEKILNHL--GLKGKTIAVLGLAFKPNTDDMRESPALD 334
|
Length = 414 |
| >gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Score = 279 bits (717), Expect = 1e-91
Identities = 132/350 (37%), Positives = 192/350 (54%), Gaps = 20/350 (5%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KI IG GYVG P A++A +V VDI +++ N + PIYEPGLD ++ +
Sbjct: 2 KIAVIGLGYVGLPLAALLADL--GHDVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKAL 59
Query: 63 GKNLF-FSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
+TD E+ + +AD++ + V TP K G + DL+Y ESAA IA +
Sbjct: 60 KAGRLRATTDYEEAIRDADVIIICVPTPLKEDG-----SPDLSYVESAAETIAKHLRKGA 114
Query: 122 IVVEKSTVPVKTAEAIEK-ILTHNSK--GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGG 178
VV +STVP T E + K IL + G F + NPEFL EG A+ DL +PDR++ G
Sbjct: 115 TVVLESTVPPGTTEEVVKPILERSGLKLGEDFYLAYNPEFLREGNAVHDLLHPDRIVGG- 173
Query: 179 RETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238
ET E A +A+ ++Y+ + + +L T++ +AE+ KLA N F A +I+ N ++ +CE
Sbjct: 174 -ETEE---AGEAVAELYSPII-DGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICE 228
Query: 239 ATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQ 298
A G +V +V A GTD RIG FLN G GG C KD L L+ + G E +
Sbjct: 229 ALGIDVYEVIEAAGTDPRIGFNFLNPGPGVGGHCIPKDPLALIAKAKELGYN--PELIEA 286
Query: 299 VIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
+IND Q V ++ + + K + +LG AFK +T D RE+PA+D
Sbjct: 287 AREINDSQPDYVVEKIKDLLGA-LKGKTVLILGLAFKPNTDDVRESPALD 335
|
Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22) , GDP-mannose 6-dehydrogenase (1.1.1.132) , UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Length = 409 |
| >gnl|CDD|217692 pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain | Back alignment and domain information |
|---|
Score = 224 bits (574), Expect = 4e-73
Identities = 86/191 (45%), Positives = 116/191 (60%), Gaps = 11/191 (5%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
++I IG GYVG PT +A +V VDI+ S+I+ N+ ++PIYEPGL+ ++K
Sbjct: 1 MRIAVIGLGYVGLPTAVCLAEIG--HDVVGVDINQSKIDKLNNGKIPIYEPGLEELLKAN 58
Query: 62 R-GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
L F+TDV + + EAD++F++V TP+K G A DLTY ESAAR I V K
Sbjct: 59 VETGRLRFTTDVAEAIKEADVIFIAVPTPSKKDG----GAPDLTYVESAARTIGPVLKKG 114
Query: 121 KIVVEKSTVPVKTAEA-IEKILTHNSK---GIKFQILSNPEFLAEGTAIQDLFNPDRVLI 176
K+VV KSTVP T E ++ IL S G+ F + SNPEFL EG A+ DL NPDRV+I
Sbjct: 115 KVVVVKSTVPPGTTEEVVKPILEKRSGKKFGVDFNVASNPEFLREGNALHDLLNPDRVVI 174
Query: 177 GGRETPEGQKA 187
G E ++
Sbjct: 175 GVTEECAEERL 185
|
The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 188 |
| >gnl|CDD|223749 COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 2e-44
Identities = 118/359 (32%), Positives = 165/359 (45%), Gaps = 32/359 (8%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
I IG GYVG P A A +V VDI+ +++ N + I EP LD VVK+
Sbjct: 9 SATIGVIGLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKE 66
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
+T + + E D+ + V TP L + DL+Y ESAAR IA V K
Sbjct: 67 AVESGKLRATTDPEELKECDVFIICVPTP-----LKKYREPDLSYVESAARSIAPVLKKG 121
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIK----FQILSNPEFLAEGTAIQDLFNPDRVLI 176
+V+ +ST P T E + K L G+K F + +PE + G +++L N +V I
Sbjct: 122 DLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGNVLKELVNNPKV-I 180
Query: 177 GGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236
GG TP+ + AL Y V E I T+ +AE+ KL N F I+ N ++ +
Sbjct: 181 GG-VTPKCAELAAAL---YKTIV-EGVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235
Query: 237 CEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLP----EV 292
C A G +V +V A T R+ G GG C D L + GLP
Sbjct: 236 CNAMGIDVWEVIEAANTKPRVNI--FYPGPGVGGHCIPVDPYFLTWKAPEYGLPARLIRT 293
Query: 293 AEYWKQVIKINDYQKSRFVNRVVASMFNT---VSNKKIAVLGFAFKKDTGDTRETPAID 348
A +IND V+RV ++ +S KI VLG A+K D D RE+PA+D
Sbjct: 294 AR------EINDSMPRHVVDRVKEALNKAGKPLSGSKILVLGLAYKGDVDDLRESPALD 346
|
Length = 436 |
| >gnl|CDD|201536 pfam00984, UDPG_MGDP_dh, UDP-glucose/GDP-mannose dehydrogenase family, central domain | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 5e-42
Identities = 52/98 (53%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
Query: 209 LWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGF 268
L +AE+ K AANAFLA +IS +N ++ +CEA GA+VS+VA A G D RIG KFLN GF
Sbjct: 1 LKTAEMIKYAANAFLATKISFINELANICEAVGADVSEVARAAGLDPRIGRKFLNPGPGF 60
Query: 269 GGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQ 306
GGSCF KD L Y E GLP A +V+ +N Q
Sbjct: 61 GGSCFPKDPYALTYKAEELGLP--ARLLGRVVNVNMPQ 96
|
The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 96 |
| >gnl|CDD|182940 PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 3e-28
Identities = 113/377 (29%), Positives = 166/377 (44%), Gaps = 51/377 (13%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC- 61
I IG GY+G PT A A + +V VDI+ ++ N ++ I EP LD VVK
Sbjct: 5 TISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAV 62
Query: 62 RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
G L +T E AD ++V TP K DLTY E+AA+ IA V K
Sbjct: 63 EGGYLRATTTPE----PADAFLIAVPTPFK-----GDHEPDLTYVEAAAKSIAPVLKKGD 113
Query: 122 IVVEKSTVPVKTAEAIEKILTHNSKGIKF----------QILSNPEFLAEGTAIQDLFNP 171
+V+ +ST PV E + + L + F I PE + G + +L
Sbjct: 114 LVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKN 173
Query: 172 DRVLIGGRETPE-GQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSV 230
DRV IGG TP +A ++Y ++ E + TN +AE+ KL N+F I+
Sbjct: 174 DRV-IGGM-TPVCSARAS----ELYKIFL-EGECVVTNSRTAEMCKLTENSFRDVNIAFA 226
Query: 231 NAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLP 290
N +S +C G NV ++ R+ L G GG C D +V P
Sbjct: 227 NELSLICADQGINVWELIRLANRHPRV--NILQPGPGVGGHCIAVDPWFIVAQN-----P 279
Query: 291 EVAEYWKQVIKINDYQKSRFVNRVVASM--FNTVSNK-----KIAVLGFAFKKDTGDTRE 343
+ A + ++ND + +++V A++ ++K KIA G AFK + D RE
Sbjct: 280 QQARLIRTAREVNDGKPHWVIDQVKAAVADCLAATDKRASEVKIACFGLAFKPNIDDLRE 339
Query: 344 TPAI-------DSHHGE 353
+PA+ H GE
Sbjct: 340 SPAMEIAELIAQWHSGE 356
|
Length = 415 |
| >gnl|CDD|185017 PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 3e-24
Identities = 92/288 (31%), Positives = 133/288 (46%), Gaps = 34/288 (11%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ- 60
+KI G GYVG +IA + EV +DI SR+ N PI +D ++Q
Sbjct: 1 MKITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDRISPI----VDKEIQQF 53
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPT----KTQGLGAGKAADLTYWESAARVIADV 116
+ + F+ ++K+ + D +V + TPT KT S VI DV
Sbjct: 54 LQSDKIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNT---------SSVESVIKDV 104
Query: 117 SK--SDKIVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDR 173
+ ++V KSTVPV TA +K T N I+ +PEFL EG A+ D +P R
Sbjct: 105 VEINPYAVMVIKSTVPVGFTAAMHKKYRTEN-------IIFSPEFLREGKALYDNLHPSR 157
Query: 174 VLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 233
++IG R + A + +P L T+ AE KL AN +LA R++ N +
Sbjct: 158 IVIGERSERAERFAALLQEGAIKQNIP---TLFTDSTEAEAIKLFANTYLAMRVAYFNEL 214
Query: 234 SALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLV 281
+ E+ G N Q+ V D RIG + N S G+GG C KD L+
Sbjct: 215 DSYAESLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLL 262
|
Length = 388 |
| >gnl|CDD|185104 PRK15182, PRK15182, Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 6e-10
Identities = 92/360 (25%), Positives = 150/360 (41%), Gaps = 41/360 (11%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
VKI IG GYVG P +AV K S +V D++ RI + + L+ ++
Sbjct: 7 VKIAIIGLGYVGLP-LAVEFGK--SRQVVGFDVNKKRILELKNG----VDVNLETTEEEL 59
Query: 62 R-GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
R + L F++++EK + E + ++V TP T K DLT A+ + V
Sbjct: 60 REARYLKFTSEIEK-IKECNFYIITVPTPINTY-----KQPDLTPLIKASETVGTVLNRG 113
Query: 121 KIVVEKSTV-PVKTAEAIEKILTHNSKGIKFQ----ILSNPEFLAEGTAIQDLFNPDRVL 175
IVV +STV P T E IL S G+ F + +PE + G L N ++
Sbjct: 114 DIVVYESTVYPGCTEEECVPILARMS-GMTFNQDFYVGYSPERINPGDKKHRLTNIKKIT 172
Query: 176 IGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235
G + + + +VY + ++ AE +K+ N I+ VN ++
Sbjct: 173 SGST-----AQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAI 227
Query: 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEY 295
+ + V A G+ P F VG G C D L + + G Y
Sbjct: 228 IFNRLNIDTEAVLRAAGSKWNFLP-FRPGLVG--GHCIGVDPYYLTHKSQGIG------Y 278
Query: 296 WKQVI----KINDYQKSRFVNRVVASMFN---TVSNKKIAVLGFAFKKDTGDTRETPAID 348
+ ++I ++ND + +++ +M V + +LGF FK++ D R T ID
Sbjct: 279 YPEIILAGRRLNDNMGNYVSEQLIKAMIKKGINVEGSSVLILGFTFKENCPDIRNTRIID 338
|
Length = 425 |
| >gnl|CDD|217691 pfam03720, UDPG_MGDP_dh_C, UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-06
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 328 AVLGFAFKKDTGDTRETPAID 348
AVLG AFK +T D RE+PA+D
Sbjct: 1 AVLGLAFKPNTDDLRESPALD 21
|
The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 103 |
| >gnl|CDD|214954 smart00984, UDPG_MGDP_dh_C, UDP binding domain | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 5e-06
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 328 AVLGFAFKKDTGDTRETPAID 348
AVLG AFK +T D RE+PA+D
Sbjct: 1 AVLGLAFKPNTDDLRESPALD 21
|
The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 99 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 362 | |||
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 100.0 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 100.0 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 100.0 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 100.0 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 100.0 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 100.0 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 100.0 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 100.0 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 100.0 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.97 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.97 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.97 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.97 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 99.97 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.97 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 99.96 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.95 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.95 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.95 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.95 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.94 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.93 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.91 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.91 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.9 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.87 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.87 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.87 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.85 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.85 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.83 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.83 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.83 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.82 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.82 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.81 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.81 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.79 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.78 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.77 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.77 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.76 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.75 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.74 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.74 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.73 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.73 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.72 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.71 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.7 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.68 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.68 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.68 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.67 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.67 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.66 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.64 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.62 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.61 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.6 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.6 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.59 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.59 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.59 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.58 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.58 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.57 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.54 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.54 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.52 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.51 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.51 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.51 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.49 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.46 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.45 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.44 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.43 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.43 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.41 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.41 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.39 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.36 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.31 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.3 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.29 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.29 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.28 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.28 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.26 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.25 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.24 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.24 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.23 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.17 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 99.13 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 99.12 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.1 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.09 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 99.08 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.05 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.01 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.96 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 98.93 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.85 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.84 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.8 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.79 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.76 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.75 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.74 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 98.73 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.71 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.7 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.68 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.68 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.68 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 98.68 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.67 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.61 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.59 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 98.56 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.56 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.53 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.53 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.5 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 98.48 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 98.47 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.47 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 98.46 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 98.45 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.44 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.44 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 98.44 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 98.4 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.39 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.36 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.36 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 98.36 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.33 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.33 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.31 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.31 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.3 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.3 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.3 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.25 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 98.23 | |
| PLN02602 | 350 | lactate dehydrogenase | 98.22 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.21 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 98.19 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 98.18 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.18 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.14 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.13 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.13 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 98.12 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.08 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 98.05 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 98.05 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.04 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 98.02 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.0 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.97 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.96 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.95 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.95 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.94 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.94 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.94 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.92 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.92 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.91 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.89 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.88 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.85 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.84 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.84 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.84 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.83 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.82 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.8 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.8 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.78 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.76 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.75 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.75 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.75 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.74 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.73 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.72 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.71 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.7 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.7 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.69 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 97.69 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 97.68 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.67 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.66 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.66 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 97.66 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 97.66 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.64 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.64 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.64 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.64 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.64 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 97.63 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.62 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.61 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.6 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.6 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.57 | |
| PLN00106 | 323 | malate dehydrogenase | 97.57 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.56 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.55 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.55 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.52 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 97.48 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.44 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 97.43 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.43 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.43 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.41 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 97.39 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.37 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 97.36 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.35 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 97.32 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.29 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.29 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.27 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 97.25 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.25 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 97.22 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.22 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 97.21 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.2 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 97.19 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.19 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.17 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 97.14 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 97.12 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.11 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 97.1 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 97.09 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 97.09 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.07 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.07 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.07 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 97.06 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.04 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 97.03 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.03 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.02 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 97.02 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.99 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 96.99 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.9 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.9 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.89 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.88 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 96.86 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.85 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 96.84 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 96.83 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 96.83 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.83 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.82 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 96.7 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.68 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 96.65 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.65 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.63 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 96.63 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.62 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 96.6 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.53 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 96.52 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.47 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.45 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.45 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 96.45 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.41 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.38 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 96.36 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 96.32 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.29 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.28 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.28 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.27 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 96.24 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 96.23 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 96.23 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 96.23 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.22 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.21 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.19 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.19 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 96.19 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.19 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 96.16 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 96.12 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.12 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.1 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.09 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 96.06 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.05 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.04 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.04 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.02 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.0 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.99 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 95.99 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.99 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.97 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 95.96 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.92 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.89 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 95.84 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.82 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 95.81 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.8 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.79 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.78 | |
| PRK05868 | 372 | hypothetical protein; Validated | 95.76 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.75 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.74 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.73 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 95.72 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 95.72 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 95.72 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 95.71 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 95.7 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 95.7 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.69 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 95.68 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 95.68 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 95.65 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 95.63 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 95.63 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 95.62 | |
| PTZ00245 | 287 | ubiquitin activating enzyme; Provisional | 95.61 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.6 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 95.53 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.52 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 95.5 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.48 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 95.47 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.46 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.45 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.43 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 95.39 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 95.39 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 95.37 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 95.37 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.33 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.32 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 95.31 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 95.31 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 95.29 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 95.26 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 95.21 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.2 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.19 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 95.19 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 95.17 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 95.14 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.13 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 95.12 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 95.11 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.08 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 95.08 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 95.08 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 95.08 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.07 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 95.06 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.04 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 95.02 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 95.0 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 94.98 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 94.95 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.95 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 94.95 | |
| PRK08223 | 287 | hypothetical protein; Validated | 94.94 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 94.94 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 94.93 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 94.92 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 94.9 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 94.9 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 94.89 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 94.88 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 94.88 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.88 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 94.87 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 94.86 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 94.85 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 94.85 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 94.85 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 94.84 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 94.83 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 94.81 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 94.79 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 94.74 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.73 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.69 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 94.69 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.67 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 94.66 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 94.65 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 94.63 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 94.62 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 94.59 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 94.55 | |
| PLN02477 | 410 | glutamate dehydrogenase | 94.52 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.46 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 94.42 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.42 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 94.41 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 94.3 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 94.29 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 94.29 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 94.28 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 94.27 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.26 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 94.25 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 94.23 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 94.23 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 94.23 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 94.22 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 94.2 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 94.18 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 94.16 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.15 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.15 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 94.14 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 94.14 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 94.13 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 94.12 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 94.11 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 94.11 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 94.08 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.06 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 94.03 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 94.01 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 93.99 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 93.99 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 93.97 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 93.97 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 93.96 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 93.92 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 93.91 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 93.9 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 93.9 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 93.89 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 93.89 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 93.88 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 93.88 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.87 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 93.85 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 93.85 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 93.84 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 93.82 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 93.81 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 93.8 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.76 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 93.74 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 93.74 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 93.72 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 93.67 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 93.65 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 93.64 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 93.64 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 93.64 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 93.61 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 93.6 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 93.6 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 93.59 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 93.57 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 93.54 | |
| PLN02366 | 308 | spermidine synthase | 93.53 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 93.53 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 93.52 | |
| PLN02823 | 336 | spermine synthase | 93.47 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.43 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 93.42 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 93.42 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 93.41 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.38 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 93.38 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 93.35 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 93.34 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 93.33 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 93.3 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 93.28 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 93.27 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 93.27 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 93.26 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 93.25 |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-86 Score=615.21 Aligned_cols=342 Identities=42% Similarity=0.681 Sum_probs=322.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||.||+|+..|.+||+. ||+|+++|+|+++++.|++|..|++||++++++++ ...++++||+|++++++++|
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~--GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL--GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence 8999999999999999999999 99999999999999999999999999999999886 55678999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
++|||||||.+++| ..|+++++++++.|.++++..++||++|||||||++.+.+.+.+...+.+|.|+++|||++
T Consensus 79 v~fIavgTP~~~dg-----~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLR 153 (414)
T COG1004 79 VVFIAVGTPPDEDG-----SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLR 153 (414)
T ss_pred EEEEEcCCCCCCCC-----CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhc
Confidence 99999999999876 9999999999999999999889999999999999999987776654455899999999999
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC-CCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV-PEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (362)
+|+|++|+++|+|||+|..+ +++.+.++++|..+. ...++..++.++||+.||+.|+|+|++|+|+||++.+|++
T Consensus 154 EG~Av~D~~~PdRIViG~~~----~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~ 229 (414)
T COG1004 154 EGSAVYDFLYPDRIVIGVRS----ERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEK 229 (414)
T ss_pred CcchhhhccCCCeEEEccCC----hhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999874 567888999998752 1357888999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhc
Q 017997 240 TGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMF 319 (362)
Q Consensus 240 ~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~ 319 (362)
.|+|..+|++.+|.|+|||.+|++||+||||+|||||+.+|++.|++.|++ ..+++++.++|+.||.++++++.+.+.
T Consensus 230 ~g~D~~~V~~gIGlD~RIG~~fl~aG~GyGGsCfPKD~~AL~~~a~~~~~~--~~ll~avv~vN~~qk~~~~~~i~~~~~ 307 (414)
T COG1004 230 VGADVKQVAEGIGLDPRIGNHFLNAGFGYGGSCFPKDTKALIANAEELGYD--PNLLEAVVEVNERRKDKLAEKILNHLG 307 (414)
T ss_pred hCCCHHHHHHHcCCCchhhHhhCCCCCCCCCcCCcHhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998 899999999999999999999988875
Q ss_pred CCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 320 ~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
++|++|+||||+|||||||+|+||++.|++.|++.|+
T Consensus 308 --l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga 344 (414)
T COG1004 308 --LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGA 344 (414)
T ss_pred --CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999985
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-85 Score=602.26 Aligned_cols=340 Identities=35% Similarity=0.481 Sum_probs=316.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (362)
++|+||||||||+|+|..||++ |++|+|+|+|+.+++.+++|+.++.|+++++++++ ...+++++|+|+++ ++.||
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~--G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~d 86 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECD 86 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc--CCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCC
Confidence 6899999999999999999999 99999999999999999999999999999987665 56788999999998 88999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHH-HHHhccC---CCceEEeeCC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEK-ILTHNSK---GIKFQILSNP 156 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~-~l~~~~~---g~~~~v~~~P 156 (362)
+++||||||.+.+ ++||+++++++.+.|+++|++|++||.+||+|||||+++.. ++++.++ +.||+++|||
T Consensus 87 v~iI~VPTPl~~~-----~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysP 161 (436)
T COG0677 87 VFIICVPTPLKKY-----REPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSP 161 (436)
T ss_pred EEEEEecCCcCCC-----CCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCc
Confidence 9999999999873 59999999999999999999999999999999999998754 5554332 6799999999
Q ss_pred cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017997 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (362)
||..||+..+++.+.++| +||. ++++.+.+..||+.+.. ..+.++++++||++|+.+|+||++|||++||++.+
T Consensus 162 ERv~PG~~~~el~~~~kV-IgG~----tp~~~e~a~~lY~~iv~-~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali 235 (436)
T COG0677 162 ERVLPGNVLKELVNNPKV-IGGV----TPKCAELAAALYKTIVE-GVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235 (436)
T ss_pred cccCCCchhhhhhcCCce-eecC----CHHHHHHHHHHHHHheE-EEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 999999999999999998 5877 38899999999999885 46778999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHH
Q 017997 237 CEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVA 316 (362)
Q Consensus 237 ~~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (362)
|+++|+|.++++++++++|+ .+.++||||+||||+|.||+||+|.|+++|.+ +++++.++++|++||.|+++++.+
T Consensus 236 ~~~~GIdvwevIeaAnt~P~--~~~~~PGpGvGGHCIpvDP~fl~~ka~~yg~~--~rlI~tAreIN~~mP~~Vv~~~~~ 311 (436)
T COG0677 236 CNAMGIDVWEVIEAANTKPR--VNIFYPGPGVGGHCIPVDPYFLTWKAPEYGLP--ARLIRTAREINDSMPRHVVDRVKE 311 (436)
T ss_pred HHHhCCcHHHHHHHhccCCc--eeecCCCCCCCCcccccCchheeecccccCCc--hHHHHHHHHHhccCCHHHHHHHHH
Confidence 99999999999999999998 48899999999999999999999999999999 999999999999999999999988
Q ss_pred Hh---cCCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccCC
Q 017997 317 SM---FNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERGL 359 (362)
Q Consensus 317 ~~---~~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~~ 359 (362)
.| ++.+++++|+|||||||+|+||+||||+++|++.|.+.|+.
T Consensus 312 al~~~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~ 357 (436)
T COG0677 312 ALNKAGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGE 357 (436)
T ss_pred HHHHcCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCe
Confidence 66 56889999999999999999999999999999999999853
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-83 Score=627.54 Aligned_cols=358 Identities=92% Similarity=1.366 Sum_probs=330.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
||||+|||+||||+++|..|++++.||+|++||+|++++++|++|+.+++|+++++++.+...+++++|+++.+++++||
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 79999999999999999999998546889999999999999999999999999999987643456999999988899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
++|||||||.+.+|.+.++.+|++++++++++|.++++++++||.+||+||||++.+.+.+.+.+.|.+|+++|+|||+.
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~ 160 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLA 160 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccC
Confidence 99999999987654333458999999999999999999999999999999999999988777654467899999999999
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (362)
||++++++.+|++||+|+.++++.+++.++++++|+.+.+..++.++++++||++|+++|+||+++|+|+||++.+|+++
T Consensus 161 ~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~ 240 (473)
T PLN02353 161 EGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (473)
T ss_pred CCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999899875544467889999999998643577889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 017997 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFN 320 (362)
Q Consensus 241 g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~ 320 (362)
|+|+.+|++++++|||+|++|++||+||||||||||+++|++.++++|+++.++++++++++|+.||+++++++++.+.+
T Consensus 241 giD~~eV~~~~~~d~rig~~~l~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN~~~~~~vv~~~~~~l~~ 320 (473)
T PLN02353 241 GADVSQVSHAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMNDYQKSRFVNRVVSSMFN 320 (473)
T ss_pred CCCHHHHHHHhCCCCcCCCCCCCCCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999998778899999999999999999999998877
Q ss_pred CCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 321 ~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
.++++||+|||+||||||+|+|+||+++|++.|+++|.
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~ 358 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA 358 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCC
Confidence 88999999999999999999999999999999999875
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-74 Score=551.32 Aligned_cols=328 Identities=25% Similarity=0.370 Sum_probs=291.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+||||+++|..|+ . ||+|++||+|+++++.++++..+++|+++++++.+. .++++++++..+++++||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~--G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~-~~~l~~t~~~~~~~~~ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q--NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSD-KIHFNATLDKNEAYRDADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h--CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhC-CCcEEEecchhhhhcCCCE
Confidence 79999999999999998887 5 799999999999999999999999999999987652 4567778888787899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (362)
||+|||||.+.. ...+|++++++++++|.+ ++++++||++||+||||++++.+.+.+ +.++|+|||+.+
T Consensus 77 vii~Vpt~~~~k----~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~------~~v~~~PE~l~~ 145 (388)
T PRK15057 77 VIIATPTDYDPK----TNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRT------ENIIFSPEFLRE 145 (388)
T ss_pred EEEeCCCCCccC----CCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhc------CcEEECcccccC
Confidence 999999997542 237899999999999988 689999999999999999998876654 357899999999
Q ss_pred CccccccCCCCeEEEecCCCcchHHHHHHHHHHH-hccCCCC-cEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 017997 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVY-AHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (362)
Q Consensus 162 g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~-~~~~~~~-~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (362)
|++++++.+|++||+|+. ++..+++.++| ..+.... +++++++++||++||++|+|++++|+|+||++.+|++
T Consensus 146 G~a~~d~~~p~rvv~G~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~ 220 (388)
T PRK15057 146 GKALYDNLHPSRIVIGER-----SERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAES 220 (388)
T ss_pred CcccccccCCCEEEEEcC-----cHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876 34456666666 4443222 3357999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhc
Q 017997 240 TGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMF 319 (362)
Q Consensus 240 ~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~ 319 (362)
+|+|+++|++++++|||+|..|++||+||||||||||+++|.+.+ .+++ ++++++++++|+.||+++++++++.
T Consensus 221 ~GiD~~eV~~a~~~d~ri~~~~l~pG~G~GG~ClpkD~~~L~~~~--~~~~--~~l~~~~~~~N~~~~~~~~~~~~~~-- 294 (388)
T PRK15057 221 LGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANY--QSVP--NNLISAIVDANRTRKDFIADAILSR-- 294 (388)
T ss_pred hCcCHHHHHHHhcCCCCCCCccCCCCCCCCCcChhhhHHHHHHhc--cCCC--cHHHHHHHHHHHHhHHHHHHHHHHh--
Confidence 999999999999999999999999999999999999999998776 4555 7899999999999999999999763
Q ss_pred CCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 320 ~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
++++|+|||+||||||+|+|+||+++|++.|+++|.
T Consensus 295 ---~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~ 330 (388)
T PRK15057 295 ---KPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGV 330 (388)
T ss_pred ---cCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCC
Confidence 689999999999999999999999999999999985
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-73 Score=552.72 Aligned_cols=336 Identities=24% Similarity=0.290 Sum_probs=303.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+|||+|||+||||++||.+|++ ||+|++||+++++++.+++|..|++|++++++... +++.++++.+ ++++||
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~---~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~---g~l~~t~~~~-~~~~ad 78 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK---SRQVVGFDVNKKRILELKNGVDVNLETTEEELREA---RYLKFTSEIE-KIKECN 78 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc---CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhh---CCeeEEeCHH-HHcCCC
Confidence 3899999999999999999886 69999999999999999999999999999998653 6788998876 589999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHH-HHHHHHhcc--C-CCceEEeeCC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNS--K-GIKFQILSNP 156 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~-l~~~l~~~~--~-g~~~~v~~~P 156 (362)
++|+|||||.+.++ .+|++++.++.++|.++++++++||++||++|||+++ +.+.+++.. . +.+|.++|+|
T Consensus 79 vvii~Vptp~~~~~-----~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~P 153 (425)
T PRK15182 79 FYIITVPTPINTYK-----QPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSP 153 (425)
T ss_pred EEEEEcCCCCCCCC-----CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCC
Confidence 99999999987654 8999999999999999999999999999999999986 456666532 1 4679999999
Q ss_pred cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017997 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (362)
||+.+|.+.+++.+++++++|+. +++.+.++++|+.+.....++++++++||++|+++|+|++++|+++||++.+
T Consensus 154 E~v~~G~a~~~~~~~~riv~G~~-----~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~l 228 (425)
T PRK15182 154 ERINPGDKKHRLTNIKKITSGST-----AQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAII 228 (425)
T ss_pred CcCCCCcccccccCCCeEEECCC-----HHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999976643 6788899999999863346778999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHH
Q 017997 237 CEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVA 316 (362)
Q Consensus 237 ~~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (362)
|+++|+|++++++++++++++ ..+.||+ |||||||||+++|.+.+++.|+. ++++++++++|++||+++++++++
T Consensus 229 ae~~GiD~~~v~~a~~~~~~~--~~~~pG~-vGG~ClpkD~~~L~~~a~~~g~~--~~l~~~a~~iN~~~~~~v~~~~~~ 303 (425)
T PRK15182 229 FNRLNIDTEAVLRAAGSKWNF--LPFRPGL-VGGHCIGVDPYYLTHKSQGIGYY--PEIILAGRRLNDNMGNYVSEQLIK 303 (425)
T ss_pred HHHhCcCHHHHHHHhcCCCCc--ccCCCCc-cccccccccHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999753 3346666 99999999999999999999998 899999999999999999999998
Q ss_pred Hh---cCCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 317 SM---FNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 317 ~~---~~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
.+ ++++++++|+|||+||||||+|+|+||+++|++.|+++|.
T Consensus 304 ~l~~~~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~ 348 (425)
T PRK15182 304 AMIKKGINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSC 348 (425)
T ss_pred HHHhcCCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCC
Confidence 87 3568999999999999999999999999999999999875
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-72 Score=544.25 Aligned_cols=335 Identities=31% Similarity=0.434 Sum_probs=302.3
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|||+|+||+++|.+|+++ ||+|++||+++++++.+++|..+++|+++++++.+ ...++++++++. ++|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~----~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTP----EPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeeccc----ccC
Confidence 48999999999999999999999 99999999999999999999999999999998764 345778887753 479
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC----------CCc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK----------GIK 149 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~----------g~~ 149 (362)
|+||+|||||.+.++ .+|++++.+++++|.++++++++||++||++|||++++...+.+.+. +.+
T Consensus 77 Dvvii~vptp~~~~~-----~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~ 151 (415)
T PRK11064 77 DAFLIAVPTPFKGDH-----EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQAD 151 (415)
T ss_pred CEEEEEcCCCCCCCC-----CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCC
Confidence 999999999987654 89999999999999999999999999999999999998776655321 357
Q ss_pred eEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHH
Q 017997 150 FQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISS 229 (362)
Q Consensus 150 ~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~ 229 (362)
|.++++|||+.+|.+.+++.++++++ ||.+ +++.++++++|+.++. ..++++++++||++|+++|+|+++++++
T Consensus 152 f~v~~~PE~~~~G~~~~~~~~~~~vv-gG~~----~~~~~~~~~ly~~~~~-~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~ 225 (415)
T PRK11064 152 INIAYCPERVLPGQVMVELIKNDRVI-GGMT----PVCSARASELYKIFLE-GECVVTNSRTAEMCKLTENSFRDVNIAF 225 (415)
T ss_pred eEEEECCCccCCCChhhhhcCCCEEE-EeCC----HHHHHHHHHHHHHhcC-CCeeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999875 7752 7889999999999974 4667789999999999999999999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHH
Q 017997 230 VNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSR 309 (362)
Q Consensus 230 ~nE~~~l~~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~ 309 (362)
+||++.+|+++|+|+++|++++++|||+ ++++||+||||||||||+++|.+. .+.. ++++++++++|+.||++
T Consensus 226 ~nE~~~lae~~GiD~~~v~~~~~~~~ri--~~l~pG~G~GG~ClpkD~~~L~~~---~~~~--~~l~~~a~~~N~~~~~~ 298 (415)
T PRK11064 226 ANELSLICADQGINVWELIRLANRHPRV--NILQPGPGVGGHCIAVDPWFIVAQ---NPQQ--ARLIRTAREVNDGKPHW 298 (415)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhccCCCc--ccCCCCCCCCCccccccHHHHHHh---cCCc--cHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999987 689999999999999999999764 3444 78999999999999999
Q ss_pred HHHHHHHHh-------cCCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccCC
Q 017997 310 FVNRVVASM-------FNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERGL 359 (362)
Q Consensus 310 ~~~~~~~~~-------~~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~~ 359 (362)
+++++++.+ ++++++++|+|||+||||||+|+||||+++|++.|+++|+.
T Consensus 299 v~~~~~~~l~~~l~~~~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~ 355 (415)
T PRK11064 299 VIDQVKAAVADCLAATDKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSG 355 (415)
T ss_pred HHHHHHHHHhhhhhhhccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCc
Confidence 999998876 45689999999999999999999999999999999999744
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-72 Score=496.54 Aligned_cols=359 Identities=84% Similarity=1.296 Sum_probs=346.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+|||-||+||+|+|..+.+|.+.|..+|+++|++..++.++++..+|+||||+++.+.++...++.|++|.+.+++++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead 80 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD 80 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence 78999999999999999999999899999999999999999999999999999999999988999999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
+||+.|.||....|.|+++.+|+++++++.+.|+......+||+.+||+|+.+.+.+..++.+..+|..|.++++|||+.
T Consensus 81 lvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpefla 160 (481)
T KOG2666|consen 81 LVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLA 160 (481)
T ss_pred eEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhc
Confidence 99999999999899999999999999999999999999999999999999999999999997666688999999999999
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (362)
+|.++.|+++|+||+|||.+++...++.+.+..+|+++.+..++.+++.+++|+.||+.|+|++.+|+.+|.|..+||..
T Consensus 161 egtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceat 240 (481)
T KOG2666|consen 161 EGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEAT 240 (481)
T ss_pred ccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 99999999999999999998877788899999999999987788899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 017997 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFN 320 (362)
Q Consensus 241 g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~ 320 (362)
|+|..+|..++|+|.|||++|++.+.||||+|+.||+..|+++++.+++||++++|+++..+|++|+.++++++..+|.+
T Consensus 241 gadv~eva~avg~d~rig~kfl~asvgfggscfqkdilnlvyice~lnlpeva~ywqqvi~~ndyqkrrfa~rii~smFN 320 (481)
T KOG2666|consen 241 GADVSEVAYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICECLNLPEVAEYWQQVIKINDYQKRRFANRIISSMFN 320 (481)
T ss_pred CCCHHHHHHHhcccccccHHHhhcccCcCchhHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccCC
Q 017997 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERGL 359 (362)
Q Consensus 321 ~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~~ 359 (362)
.+.+|+|+|||++||.||.|+||||++.+.+.|+++|+.
T Consensus 321 TVsdKKIAIlGFAFKKdTgdtREt~AI~Vck~Lled~A~ 359 (481)
T KOG2666|consen 321 TVSDKKIAILGFAFKKDTGDTRETPAIDVCKGLLEDKAR 359 (481)
T ss_pred ccccceEEEEEeEeecCCCCcccCcHHHHHHHHhhccce
Confidence 999999999999999999999999999999999999863
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=536.50 Aligned_cols=342 Identities=39% Similarity=0.609 Sum_probs=315.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|+||+++|..|+++ ||+|++||+++++++.++++..|++|+++++++.+. ..++++++++++++++++|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~--G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL--GHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc--CCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence 7999999999999999999999 999999999999999999999999999999987652 2466899999988899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHH-HHHHhcc--C-CCceEEeeCC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIE-KILTHNS--K-GIKFQILSNP 156 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~-~~l~~~~--~-g~~~~v~~~P 156 (362)
+||+|||||...++ .+|++++.++++++.++++++++|+++||++|+|++++. +.+++.. . +.+|.++++|
T Consensus 79 vvii~vpt~~~~~~-----~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P 153 (411)
T TIGR03026 79 VIIICVPTPLKEDG-----SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNP 153 (411)
T ss_pred EEEEEeCCCCCCCC-----CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECC
Confidence 99999999987654 899999999999999999999999999999999998885 5555521 1 5678999999
Q ss_pred cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017997 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (362)
|++.+|.+.+++.+|+++++|++ +++.++++++|+.++.+.+++.+++++||++|+++|++++++++++||++.+
T Consensus 154 e~~~~G~~~~~~~~~~~iv~G~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 228 (411)
T TIGR03026 154 EFLREGNAVHDLLNPDRIVGGET-----EEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARI 228 (411)
T ss_pred CcCCCCChhhhhcCCCEEEEeCC-----HHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988854 7899999999999862246778999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHH
Q 017997 237 CEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVA 316 (362)
Q Consensus 237 ~~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (362)
|+++|+|+++++++++.+|+++.++++||+||||+|+|||++++++.|++.|++ .+++++++++|++||+++++++++
T Consensus 229 a~~~GiD~~~v~~~~~~~~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~--~~l~~~~~~~N~~~~~~~~~~~~~ 306 (411)
T TIGR03026 229 CEALGIDVYEVIEAAGTDPRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYN--PELIEAAREINDSQPDYVVEKILD 306 (411)
T ss_pred HHHhCCCHHHHHHHhCCCCCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCC--cHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 899999999999999999999998
Q ss_pred HhcCCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 317 SMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 317 ~~~~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
.+ +.+++++|+|||+||||||+|+|+||++.|++.|+++|.
T Consensus 307 ~l-~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~ 347 (411)
T TIGR03026 307 LL-GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGA 347 (411)
T ss_pred Hh-hcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCC
Confidence 88 678999999999999999999999999999999999974
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=285.67 Aligned_cols=182 Identities=42% Similarity=0.639 Sum_probs=149.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+||+|+++|..||++ ||+|++||+|+++++.|++|..|++||++++++++. ..+++++++|.+++++++|
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad 78 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD 78 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred CEEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence 8999999999999999999999 999999999999999999999999999999998874 4789999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH-HHHHHHHhccC-CCceEEeeCCcc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE-AIEKILTHNSK-GIKFQILSNPEF 158 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~-~l~~~l~~~~~-g~~~~v~~~Pe~ 158 (362)
++|+|||||.+.++ .+|++++++++++|+++++++++||++||+||||++ .+.+++++.+. +.+|+++|+|||
T Consensus 79 v~~I~VpTP~~~~~-----~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PEr 153 (185)
T PF03721_consen 79 VVFICVPTPSDEDG-----SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPER 153 (185)
T ss_dssp EEEE----EBETTT-----SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE----
T ss_pred eEEEecCCCccccC-----CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCc
Confidence 99999999998855 999999999999999999999999999999999998 45788887653 468999999999
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDV 194 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l 194 (362)
+.||++++++.+|++|++|..+ +.+.+++++|
T Consensus 154 l~~G~a~~d~~~~~rvV~G~~~----~~~~~~~~~l 185 (185)
T PF03721_consen 154 LREGRAIEDFRNPPRVVGGCDD----ESAEERLKEL 185 (185)
T ss_dssp --TTSHHHHHHSSSEEEEEESS----HHHHHHHHHH
T ss_pred cCCCCcchhccCCCEEEEeCCc----HHHHHHHhcC
Confidence 9999999999999999887663 4555566654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=247.38 Aligned_cols=252 Identities=20% Similarity=0.233 Sum_probs=211.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~-~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||++||+|.||.|||.+|.++ ||+|++|||++++ .+.+.+. .....+++.++++.+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a--G~~v~v~~r~~~ka~~~~~~~-------------------Ga~~a~s~~eaa~~aD 59 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA--GHEVTVYNRTPEKAAELLAAA-------------------GATVAASPAEAAAEAD 59 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC--CCEEEEEeCChhhhhHHHHHc-------------------CCcccCCHHHHHHhCC
Confidence 6999999999999999999999 9999999999999 5555441 2455677788899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+||+|||.+ ..+++++ ..+.+.+++++++|++||+.|.+++++.+.+++.+ +..+.+|.
T Consensus 60 vVitmv~~~--------------~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G----~~~lDAPV 121 (286)
T COG2084 60 VVITMLPDD--------------AAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKG----LEFLDAPV 121 (286)
T ss_pred EEEEecCCH--------------HHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcC----CcEEecCc
Confidence 999999854 2456666 67889999999999999999999999998888763 34578998
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
..++..+..+.. .|++|++ ++.+++++++|+.++. ..++.++.+.+..+|+++|.+.+.+++.+.|...++
T Consensus 122 sGg~~~A~~GtL---timvGG~-----~~~f~r~~pvl~~~g~-~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la 192 (286)
T COG2084 122 SGGVPGAAAGTL---TIMVGGD-----AEAFERAKPVLEAMGK-NIVHVGPVGAGQAAKLANNILLAGNIAALAEALALA 192 (286)
T ss_pred cCCchhhhhCce---EEEeCCC-----HHHHHHHHHHHHHhcC-ceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777766555 5889987 8899999999999983 566788889999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 017997 238 EATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIN 303 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~~~~~i~~-------~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N 303 (362)
++.|+|++.+.+++....--+| +.+ ++.|||.-..+.||+.+.++.|++.|++ .|+...+.+.-
T Consensus 193 ~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~--lP~~~~~~~ly 265 (286)
T COG2084 193 EKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKDLGLALDAAKELGAP--LPLTALAAELY 265 (286)
T ss_pred HHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHH
Confidence 9999999999999987531111 111 2557799999999999999999999998 67777655543
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-30 Score=238.08 Aligned_cols=249 Identities=19% Similarity=0.237 Sum_probs=197.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIV 82 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (362)
||+|||+|.||.++|..|++. ||+|++||+++++++.+.+. + ...++++.+++++||+|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~--G~~V~~~dr~~~~~~~~~~~------------------g-~~~~~~~~~~~~~aDiv 59 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA--GYQLHVTTIGPEVADELLAA------------------G-AVTAETARQVTEQADVI 59 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC------------------C-CcccCCHHHHHhcCCEE
Confidence 699999999999999999999 99999999999999887652 1 22345677788999999
Q ss_pred EEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 83 FVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 83 ii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|+|+|++. .++.++ +.+.+.++++++|++.||++|.+++++.+.+++. | +.++.+|.+.
T Consensus 60 i~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~--g--~~~~~~pv~g 121 (291)
T TIGR01505 60 FTMVPDSP--------------QVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEK--G--IDYLDAPVSG 121 (291)
T ss_pred EEecCCHH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc--C--CCEEecCCCC
Confidence 99998532 234443 4566778899999999999999988888877764 2 3446789876
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (362)
.+..+..+.. .+++|++ +++.++++++++.++. .+++.++.+.++.+|+++|.+.+.++++++|+..+|++
T Consensus 122 ~~~~a~~g~l---~i~~gg~-----~~~~~~~~~ll~~lg~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~ 192 (291)
T TIGR01505 122 GEIGAIEGTL---SIMVGGD-----QAVFDRVKPLFEALGK-NIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASK 192 (291)
T ss_pred CHHHHhcCCE---EEEecCC-----HHHHHHHHHHHHHhcC-CeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655543322 4778875 7889999999999973 45666677899999999999999999999999999999
Q ss_pred hCCCHHHHHHHhcCCCCC-------CCCCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHH
Q 017997 240 TGANVSQVAFAVGTDSRI-------GPKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301 (362)
Q Consensus 240 ~g~d~~~v~~~~~~~~~i-------~~~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (362)
.|+|++++.++++..... ..++. .+.+||...|+.||+.++++.+++.|++ .++++++.+
T Consensus 193 ~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~~~~~~~~~ 261 (291)
T TIGR01505 193 AGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLNLALDSAKAVGAN--LPNTATVQE 261 (291)
T ss_pred cCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCC--ChhHHHHHH
Confidence 999999999999843210 00111 1236899999999999999999999998 777776654
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=237.85 Aligned_cols=253 Identities=17% Similarity=0.170 Sum_probs=201.1
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+||+|||+|.||.+||..|+++ ||+|++||+++++++.+.+. ....++++.++++++|
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~--G~~V~v~d~~~~~~~~~~~~-------------------g~~~~~s~~~~~~~aD 59 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ--GHQLQVFDVNPQAVDALVDK-------------------GATPAASPAQAAAGAE 59 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHc-------------------CCcccCCHHHHHhcCC
Confidence 67999999999999999999999 99999999999999887652 1334567778889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+||+|+|++. .+++++ +.+.+.++++++++++||++|.+++++.+.+.+.+ +.++.+|.
T Consensus 60 vVi~~vp~~~--------------~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g----~~~ldapV 121 (296)
T PRK15461 60 FVITMLPNGD--------------LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKG----FSMMDVPV 121 (296)
T ss_pred EEEEecCCHH--------------HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CcEEEccC
Confidence 9999998532 234443 45677788999999999999999999988877653 34568887
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
...+..+..+.. .+++|++ ++.+++++++|+.++. ..++.++++.+..+|+++|.+...+++.++|...+|
T Consensus 122 ~g~~~~a~~g~l---~~~~gg~-----~~~~~~~~p~l~~~g~-~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~ 192 (296)
T PRK15461 122 GRTSDNAITGTL---LLLAGGT-----AEQVERATPILMAMGN-ELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLC 192 (296)
T ss_pred CCCHHHHHhCcE---EEEECCC-----HHHHHHHHHHHHHHcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665554433322 3678876 7889999999999974 466778899999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCC-------C-CCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 017997 238 EATGANVSQVAFAVGTDSRIG-------P-KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIN 303 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~~~~~i~-------~-~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N 303 (362)
++.|+|++.+++++...+.-. . .+. ++.++|....+.||+.+..+.+++.|++ .++.+.+.+.=
T Consensus 193 ~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~l~~~~a~~~g~~--~p~~~~~~~~~ 266 (296)
T PRK15461 193 EALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKDLGIALDVANQLHVP--MPLGAASREVY 266 (296)
T ss_pred HHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhhHHHHHHHHHHcCCC--ChHHHHHHHHH
Confidence 999999999999987542100 1 111 2345687788999999999999999999 77777665433
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=235.26 Aligned_cols=253 Identities=19% Similarity=0.249 Sum_probs=202.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+|||+|||+|.||.++|..|++. |++|++||+++++++.+.+. ....+++++++++++|
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~--g~~v~~~d~~~~~~~~~~~~-------------------g~~~~~~~~e~~~~~d 60 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA--GYSLVVYDRNPEAVAEVIAA-------------------GAETASTAKAVAEQCD 60 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCeecCCHHHHHhcCC
Confidence 47999999999999999999998 99999999999998877642 2345667888889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+||+|+|++. .++.++ +++.+.++++++|++.||+.|.+.+++.+.+++. | +.++.+|.
T Consensus 61 ~vi~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~--g--~~~~d~pv 122 (296)
T PRK11559 61 VIITMLPNSP--------------HVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAK--G--IEMLDAPV 122 (296)
T ss_pred EEEEeCCCHH--------------HHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHc--C--CcEEEcCC
Confidence 9999998532 234444 4577888899999999999999998888877764 2 34578998
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
+..+..+..+.. .+++|++ +++++.++++++.++. .+++.++.+.++.+|+++|.+.+.++++++|+..+|
T Consensus 123 ~g~~~~a~~g~l---~i~~gg~-----~~~~~~~~~~l~~~~~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~ 193 (296)
T PRK11559 123 SGGEPKAIDGTL---SVMVGGD-----KAIFDKYYDLMKAMAG-SVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLA 193 (296)
T ss_pred CCCHHHHhhCcE---EEEECCC-----HHHHHHHHHHHHHhcC-CeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877665544322 4778875 6789999999999873 456667789999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCC-------CCCCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 017997 238 EATGANVSQVAFAVGTDSRI-------GPKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIN 303 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~~~~~i-------~~~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N 303 (362)
++.|+|++++.+.+....-. .++++ ++.+||...++.||..++++.+++.|++ .++++++.+.=
T Consensus 194 ~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~~~ 266 (296)
T PRK11559 194 TKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAP--LPLTAAVMEMM 266 (296)
T ss_pred HHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHH
Confidence 99999999999998754210 01111 2346788999999999999999999999 77777766543
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=228.07 Aligned_cols=247 Identities=17% Similarity=0.155 Sum_probs=199.2
Q ss_pred EEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEEEEe
Q 017997 6 CIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVS 85 (362)
Q Consensus 6 VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~ 85 (362)
|||+|.||.+||.+|+++ ||+|++||+++++++.+.+. +...++++.++++++|+||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~-------------------g~~~~~s~~~~~~~advVil~ 59 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA--GHPVRVFDLFPDAVEEAVAA-------------------GAQAAASPAEAAEGADRVITM 59 (288)
T ss_pred CCcccHhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCEEEEe
Confidence 689999999999999999 99999999999999888752 234566788889999999999
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccccC
Q 017997 86 VNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEG 162 (362)
Q Consensus 86 vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~g 162 (362)
||++. .+.+++ +++.+.++++++|+++||+.|.+++++.+.+++. |. .++.+|...++.
T Consensus 60 vp~~~--------------~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~--g~--~~vdaPv~Gg~~ 121 (288)
T TIGR01692 60 LPAGQ--------------HVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAH--GA--VFMDAPVSGGVG 121 (288)
T ss_pred CCChH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc--CC--cEEECCCCCCHH
Confidence 99642 245555 6788888899999999999999999998888765 22 457899887766
Q ss_pred ccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCC
Q 017997 163 TAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGA 242 (362)
Q Consensus 163 ~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~g~ 242 (362)
.+..+.. .+++||+ ++.+++++++|+.++. ..+++++.+.++.+|+++|.+.+.+++.++|...+|++.|+
T Consensus 122 ~a~~g~l---~~~~gg~-----~~~~~~~~~~l~~~g~-~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 192 (288)
T TIGR01692 122 GARAGTL---TFMVGGV-----AEEFAAAEPVLGPMGR-NIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGL 192 (288)
T ss_pred HHhhCcE---EEEECCC-----HHHHHHHHHHHHHhcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6544332 4678886 6788999999999873 45667778999999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCCC------C---C-------ccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHH
Q 017997 243 NVSQVAFAVGTDSRIGP------K---F-------LNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKI 302 (362)
Q Consensus 243 d~~~v~~~~~~~~~i~~------~---~-------~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~ 302 (362)
|++++.+++...+.-++ . . -++.++|.-..+.||+.+..+.|++.|++ .++.+.+.+.
T Consensus 193 d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~~ 266 (288)
T TIGR01692 193 DPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGLAQDAAKSAGAP--TPLGALARQL 266 (288)
T ss_pred CHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHHhhHHHHHHHHHHcCCC--ChHHHHHHHH
Confidence 99999999986531000 0 0 12345677778889999999999999999 7777766554
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=220.84 Aligned_cols=255 Identities=16% Similarity=0.203 Sum_probs=203.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|++||+|.||.+|+.+|.++ ||.|++|||+.++++.+.+. ..+...+|.|+++++|+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~--G~kVtV~dr~~~k~~~f~~~-------------------Ga~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA--GYKVTVYDRTKDKCKEFQEA-------------------GARVANSPAEVAEDSDV 94 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc--CCEEEEEeCcHHHHHHHHHh-------------------chhhhCCHHHHHhhcCE
Confidence 6899999999999999999999 99999999999999988763 24556788999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
||.|||+|.+. +.+..--..+.+.++++... |+.||+.|.+..++.+.++... ...+.+|...+
T Consensus 95 vitmv~~~~~v-----------~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~----~~~vDAPVSGg 159 (327)
T KOG0409|consen 95 VITMVPNPKDV-----------KDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG----GRFVDAPVSGG 159 (327)
T ss_pred EEEEcCChHhh-----------HHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC----CeEEeccccCC
Confidence 99999987532 12222223445555676666 8999999999999988777642 24578997766
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (362)
...+..+.+ .+++||+ ++.+++..++|+.++. ..++.+..+.+..+|+++|...+..+..+.|...|++++
T Consensus 160 ~~~A~~G~L---timagGd-----e~~~~~~~~~~~~mGk-~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~ 230 (327)
T KOG0409|consen 160 VKGAEEGTL---TIMAGGD-----EALFEAASPVFKLMGK-NVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRL 230 (327)
T ss_pred chhhhcCeE---EEEecCc-----HHHHHHHHHHHHHhcc-eEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555555444 4778876 7899999999999973 455667899999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCCCccC---------CCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 017997 241 GANVSQVAFAVGTDSRIGPKFLNA---------SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIN 303 (362)
Q Consensus 241 g~d~~~v~~~~~~~~~i~~~~~~~---------g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N 303 (362)
|+|..++++++++..-.++.+..| .|||+...+.||+...++.+.+.+.| .|+...+-++-
T Consensus 231 GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KDLgla~~~a~~~~~~--~P~~slA~qly 300 (327)
T KOG0409|consen 231 GLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKDLGLALNAAESVKVP--MPLGSLAHQLY 300 (327)
T ss_pred CCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHHHHHHHHhhhccCCC--CchHHHHHHHH
Confidence 999999999999853222233333 35678889999999999999999988 67666544433
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=226.72 Aligned_cols=249 Identities=17% Similarity=0.181 Sum_probs=194.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||.+||.+|.++ ||+|++||+++. .+.+.+. .....+++.++++++|+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~--G~~v~v~~~~~~-~~~~~~~-------------------g~~~~~s~~~~~~~adv 58 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA--GHQLHVTTIGPV-ADELLSL-------------------GAVSVETARQVTEASDI 58 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC--CCeEEEEeCCHh-HHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence 6999999999999999999999 999999999874 4444321 13445677777899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
||+|||++. .+++++ ..+.+.+.++++|+++||+.|.+++++.+.+.+.+ . .++.+|..
T Consensus 59 Vi~~v~~~~--------------~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G--~--~~vdaPVs 120 (292)
T PRK15059 59 IFIMVPDTP--------------QVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELG--G--DYLDAPVS 120 (292)
T ss_pred EEEeCCChH--------------HHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcC--C--CEEEecCC
Confidence 999998642 345554 23566678899999999999999999988887753 2 34678866
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (362)
..+..+..+.. .+++||+ ++.+++++++|+.++. ..++.++.+.+..+|+++|.+.+.+++.+.|...+++
T Consensus 121 Gg~~~a~~g~l---~~~~gG~-----~~~~~~~~p~l~~~g~-~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~ 191 (292)
T PRK15059 121 GGEIGAREGTL---SIMVGGD-----EAVFERVKPLFELLGK-NITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFAS 191 (292)
T ss_pred CCHHHHhcCcE---EEEEcCC-----HHHHHHHHHHHHHHcC-CcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544432211 4677886 7889999999999973 4667788899999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCCC-------CCCCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHH
Q 017997 239 ATGANVSQVAFAVGTDSRI-------GPKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301 (362)
Q Consensus 239 ~~g~d~~~v~~~~~~~~~i-------~~~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (362)
+.|+|++++.+++...+-- ..++. .+.++|....+.||+.+.++.|++.|++ .++.+.+.+
T Consensus 192 ~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~--~p~~~~~~~ 261 (292)
T PRK15059 192 KAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNLALQSAKALALN--LPNTATCQE 261 (292)
T ss_pred HcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence 9999999999998754310 11111 2336788889999999999999999998 677766554
|
|
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=189.03 Aligned_cols=96 Identities=44% Similarity=0.710 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCC
Q 017997 209 LWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNG 288 (362)
Q Consensus 209 ~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g 288 (362)
+++||++|+++|+|++++|+|+||++.+|+++|+|+.+|++++++|||++.+++.||+||||+|||||+++|.+.+++.|
T Consensus 1 i~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~~~~~~pg~g~GG~ClpkD~~~L~~~~~~~g 80 (96)
T PF00984_consen 1 IEEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIGPHYLRPGPGFGGSCLPKDPYALIYLAKELG 80 (96)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTTSSS-S-SSS--SSCHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccccccCCCCCCCCCcchhhhHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHh
Q 017997 289 LPEVAEYWKQVIKINDYQ 306 (362)
Q Consensus 289 ~~~~~~~~~~~~~~N~~~ 306 (362)
++ .+++++++++|++|
T Consensus 81 ~~--~~ll~~~~~~N~~Q 96 (96)
T PF00984_consen 81 YP--PQLLEAVININERQ 96 (96)
T ss_dssp SH--HHHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHhcCCC
Confidence 99 78999999999986
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=247.16 Aligned_cols=253 Identities=9% Similarity=0.053 Sum_probs=207.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|++||+|.||.+||.+|+++ ||+|++||+++++.+.+.+. ....++++.+++++||+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~--G~~v~v~dr~~~~~~~l~~~-------------------Ga~~~~s~~e~a~~adv 63 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS--GFKVQAFEISTPLMEKFCEL-------------------GGHRCDSPAEAAKDAAA 63 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence 5899999999999999999999 99999999999999988752 23556788898999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
||+|+|++. .+++++ +.+.+.++++++|+++||+.|.+++++.+.+.+.+ ..+.++.+|..
T Consensus 64 Vi~~l~~~~--------------~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g--~~~~~lDaPVs 127 (1378)
T PLN02858 64 LVVVLSHPD--------------QVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERK--EQIFLVDAYVS 127 (1378)
T ss_pred EEEEcCChH--------------HHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcC--CceEEEEccCc
Confidence 999998652 355664 57888889999999999999999999988887753 22456889987
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEe-CChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT-TNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
.++..+..+.. .+++||+ ++.+++++++|+.++. ..+++ ++.+.+..+|+++|.+.+.+++.+.|...++
T Consensus 128 Gg~~~A~~G~L---~imvGG~-----~~~~~~~~p~l~~~g~-~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la 198 (1378)
T PLN02858 128 KGMSDLLNGKL---MIIASGR-----SDAITRAQPFLSAMCQ-KLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALG 198 (1378)
T ss_pred CCHHHHhcCCe---EEEEcCC-----HHHHHHHHHHHHHhcC-ceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666644433 4788987 7889999999999873 34444 6889999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHH
Q 017997 238 EATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKI 302 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~~~~~i~~-------~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~ 302 (362)
++.|+|++.++++++..+--++ +++ .+.+||....+.||+.+.++.|++.|++ .++.+.+.+.
T Consensus 199 ~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~--lpl~~~a~~~ 270 (1378)
T PLN02858 199 VRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFP--LPLLAVAHQQ 270 (1378)
T ss_pred HHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHH
Confidence 9999999999999986542111 111 2456788889999999999999999998 6777766653
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-26 Score=245.55 Aligned_cols=254 Identities=13% Similarity=0.114 Sum_probs=202.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+++|+|||+|+||.+||.+|++. ||+|++||+++++++.+.+. + ....+++.+++++||
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~------------------G-a~~~~s~~e~~~~aD 382 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKS--NFSVCGYDVYKPTLVRFENA------------------G-GLAGNSPAEVAKDVD 382 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc------------------C-CeecCCHHHHHhcCC
Confidence 37899999999999999999999 99999999999999887652 1 234567888899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+||+|||+|. .+++++ ..+.+.++++++||++||+.|++++++.+.+++.+ ..+.++.+|.
T Consensus 383 vVi~~V~~~~--------------~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g--~g~~~lDAPV 446 (1378)
T PLN02858 383 VLVIMVANEV--------------QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEG--RDIKLVDAPV 446 (1378)
T ss_pred EEEEecCChH--------------HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhC--CCcEEEEccC
Confidence 9999999763 234454 45677788999999999999999999988887632 2356788998
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEe-CChhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT-TNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (362)
..++..+..+.. .+++||+ ++.+++++++|+.++. ..++. ++++.++.+|+++|.+.+.+++.++|+..+
T Consensus 447 sGg~~~A~~G~L---~imvgG~-----~~~~~~~~plL~~lg~-~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~l 517 (1378)
T PLN02858 447 SGGVKRAAMGTL---TIMASGT-----DEALKSAGSVLSALSE-KLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAF 517 (1378)
T ss_pred CCChhhhhcCCc---eEEEECC-----HHHHHHHHHHHHHHhC-cEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766665544322 4778987 6889999999999873 34443 579999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCC-------CCCCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHH
Q 017997 237 CEATGANVSQVAFAVGTDSRI-------GPKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKI 302 (362)
Q Consensus 237 ~~~~g~d~~~v~~~~~~~~~i-------~~~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~ 302 (362)
+++.|+|+++++++++..+.- .++++ .+.++|....+.||+.++++.+++.|++ .++...+.+.
T Consensus 518 a~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~--~pl~~~~~~~ 590 (1378)
T PLN02858 518 GARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGIVSREGSSRKIP--LHLSTVAHQL 590 (1378)
T ss_pred HHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHH
Confidence 999999999999988654311 11111 2346788889999999999999999999 6776666653
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=219.64 Aligned_cols=258 Identities=13% Similarity=0.083 Sum_probs=201.4
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC--
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE-- 78 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~-- 78 (362)
+++|+|||+|.||.+||.+|+++ ||+|++|||++++++.+.+.... .+ ...+..+++++++++.
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~--G~~V~V~NRt~~k~~~l~~~~~~---~G---------a~~~~~a~s~~e~v~~l~ 71 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKK---EG---------NLPLYGFKDPEDFVLSIQ 71 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC--CCeEEEECCCHHHHHHHHHhhhh---cC---------CcccccCCCHHHHHhcCC
Confidence 46899999999999999999999 99999999999999987652000 00 0113355677776665
Q ss_pred -CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 79 -ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 79 -aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+|+||+|||.+ ..++++++.+.+.+.++++||++||+.|.+++++.+.+++.+ +.++.+|.
T Consensus 72 ~~dvIi~~v~~~--------------~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~G----i~fldapV 133 (493)
T PLN02350 72 KPRSVIILVKAG--------------APVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKG----LLYLGMGV 133 (493)
T ss_pred CCCEEEEECCCc--------------HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEeCCC
Confidence 99999999864 256788888999999999999999999999988888777652 35678898
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC-----CcEEeCChhHHHHHHHHHhHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-----DRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
..++..+..+ + .+++||+ +++.++++++++.++.+ ..+++++.+.+..+|+++|.+.+..+..+.|
T Consensus 134 SGG~~gA~~G---~-~im~GG~-----~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaE 204 (493)
T PLN02350 134 SGGEEGARNG---P-SLMPGGS-----FEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISE 204 (493)
T ss_pred cCCHHHhcCC---C-eEEecCC-----HHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777665433 2 6889987 78999999999998731 2456788899999999999999999999999
Q ss_pred HHHHHHH-hCCCHHHHHHH---hcCCCCCCC------CCc----cCCCCCcccChhHhHH------HHHHHHHhCCCchh
Q 017997 233 MSALCEA-TGANVSQVAFA---VGTDSRIGP------KFL----NASVGFGGSCFQKDIL------NLVYICECNGLPEV 292 (362)
Q Consensus 233 ~~~l~~~-~g~d~~~v~~~---~~~~~~i~~------~~~----~~g~g~gg~cl~kD~~------~l~~~a~~~g~~~~ 292 (362)
...++++ .|+|++++.++ ++..+--++ ..+ ..+++|--..+.||.. .....|.+.|+|
T Consensus 205 A~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~-- 282 (493)
T PLN02350 205 AYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVA-- 282 (493)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCC--
Confidence 9999999 59999999888 444321000 111 1345677788999999 899999999999
Q ss_pred HHH-HHHHHH
Q 017997 293 AEY-WKQVIK 301 (362)
Q Consensus 293 ~~~-~~~~~~ 301 (362)
.|+ .+++..
T Consensus 283 ~p~i~~av~~ 292 (493)
T PLN02350 283 APTIAASLDA 292 (493)
T ss_pred ccHHHHHHHH
Confidence 676 444443
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=208.44 Aligned_cols=249 Identities=16% Similarity=0.118 Sum_probs=196.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC---
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE--- 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (362)
|+|+|||+|.||.+||.+|+++ |++|++||+++++.+.+.+. ....+.++++++++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~-------------------g~~~~~s~~~~~~~~~~ 59 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED--GHEVVGYDVNQEAVDVAGKL-------------------GITARHSLEELVSKLEA 59 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHC-------------------CCeecCCHHHHHHhCCC
Confidence 6999999999999999999998 99999999999999887642 23456677776655
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
+|+||+|+|++ ..++++++.+.+.++++++||++||+.|.+++++.+.+++.+ +.++.+|..
T Consensus 60 advVi~~vp~~--------------~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g----~~~vdapV~ 121 (299)
T PRK12490 60 PRTIWVMVPAG--------------EVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERG----IHYVDCGTS 121 (299)
T ss_pred CCEEEEEecCc--------------hHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcC----CeEEeCCCC
Confidence 69999999854 245777788888889999999999999999988877776652 345789987
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC--CcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE--DRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (362)
..+..+..+. .+++||+ ++++++++++++.++.. ..++.++++.+..+|+++|.+....++.+.|...+
T Consensus 122 G~~~~a~~g~----~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l 192 (299)
T PRK12490 122 GGVWGLRNGY----CLMVGGD-----KEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLEL 192 (299)
T ss_pred CCHHHHhcCC----eEEecCC-----HHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665554431 3778987 78899999999998731 35667889999999999999999999999999999
Q ss_pred HHHhC--CCHHHHHHHhcCCCCCCCC--------CccCCCCCcccChhHhH---HHHHHHHHhCCCchhHHHHHHHH
Q 017997 237 CEATG--ANVSQVAFAVGTDSRIGPK--------FLNASVGFGGSCFQKDI---LNLVYICECNGLPEVAEYWKQVI 300 (362)
Q Consensus 237 ~~~~g--~d~~~v~~~~~~~~~i~~~--------~~~~g~g~gg~cl~kD~---~~l~~~a~~~g~~~~~~~~~~~~ 300 (362)
+++.| +|+.++++.++......+. +..-...+.-..+-||. .+.++.|++.|++ .|++.+++
T Consensus 193 ~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~l~~~~KD~~~~~l~~~~A~~~g~~--~P~~~~a~ 267 (299)
T PRK12490 193 LDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLAGIKGYVNDSGEGRWTVEEAIELAVA--APVIAASL 267 (299)
T ss_pred HHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCChhhhhHHHHhcCcHHHHHHHHHHcCCC--HHHHHHHH
Confidence 99999 9999999999853211110 11100112336778997 7899999999999 78888775
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=212.01 Aligned_cols=280 Identities=19% Similarity=0.225 Sum_probs=199.0
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCC-CCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQL-PIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~-~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|||+|.||.++|..|+++ ||+|++||+++++++.+++... ..+.++.. ...++.++++++++++++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 72 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN--GHDVTLWARDPEQAAEINADRENPRYLPGIK------LPDNLRATTDLAEALADA 72 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHcCcccccCCCCc------CCCCeEEeCCHHHHHhCC
Confidence 79999999999999999999999 9999999999999998887432 22222211 122467778888778999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEee-CCccccHHHHHHHHHhccCC-CceEEeeCCc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS-TVPVKTAEAIEKILTHNSKG-IKFQILSNPE 157 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~S-Tv~~gt~~~l~~~l~~~~~g-~~~~v~~~Pe 157 (362)
|+||+|||++ ++.++++++.+.++++++|+..+ |+.+.+.+.+.+.+++.... ....+..+|.
T Consensus 73 D~vi~~v~~~---------------~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~ 137 (325)
T PRK00094 73 DLILVAVPSQ---------------ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPS 137 (325)
T ss_pred CEEEEeCCHH---------------HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECcc
Confidence 9999999852 46788889999888888887766 88888776676666654321 1345667787
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHH-----------------HHHHHh
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAEL-----------------SKLAAN 220 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~-----------------~Kl~~N 220 (362)
...+..+ ..+..+++++. +.+..++++++|+..+. .++...|+...+| .|+..|
T Consensus 138 ~~~~~~~----g~~~~~~~~~~----~~~~~~~~~~~l~~~~~-~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n 208 (325)
T PRK00094 138 FAKEVAR----GLPTAVVIAST----DEELAERVQELFHSPYF-RVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDN 208 (325)
T ss_pred HHHHHHc----CCCcEEEEEeC----CHHHHHHHHHHhCCCCE-EEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 6544322 23334455554 26788999999998652 2344567666666 577788
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCC----CCC--CCCccCCCCCcc--------------cChhHhHHHH
Q 017997 221 AFLAQRISSVNAMSALCEATGANVSQVAFAVGTDS----RIG--PKFLNASVGFGG--------------SCFQKDILNL 280 (362)
Q Consensus 221 ~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~~----~i~--~~~~~~g~g~gg--------------~cl~kD~~~l 280 (362)
.+.++..+.++|+..+|+++|+|++++.+..+... ..+ .+.+.||.-++. .-..||..++
T Consensus 209 ~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~ 288 (325)
T PRK00094 209 ARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAV 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHH
Confidence 89999999999999999999999999988755321 001 111122211211 2346999999
Q ss_pred HHHHHhCCCchhHHHHHHHHH--HHHHhHHHHHHHH
Q 017997 281 VYICECNGLPEVAEYWKQVIK--INDYQKSRFVNRV 314 (362)
Q Consensus 281 ~~~a~~~g~~~~~~~~~~~~~--~N~~~~~~~~~~~ 314 (362)
.+.++++|++ .|+.+++.+ .|+.-|+.+++++
T Consensus 289 ~~~a~~~~~~--~P~~~~~~~~~~~~~~~~~~~~~~ 322 (325)
T PRK00094 289 YELAKKLGVE--MPITEAVYAVLYEGKDPREAVEDL 322 (325)
T ss_pred HHHHHHhCCC--CCHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999998 788887775 4455566666655
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=194.81 Aligned_cols=248 Identities=17% Similarity=0.147 Sum_probs=191.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC---
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE--- 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (362)
|||+|||+|.||.+||.+|+++ ||+|++||+++++++.+.+. ..+.+++++++++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~-------------------g~~~~~~~~e~~~~~~~ 59 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG--GHEVVGYDRNPEAVEALAEE-------------------GATGADSLEELVAKLPA 59 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC-------------------CCeecCCHHHHHhhcCC
Confidence 6999999999999999999999 99999999999999887642 24456677776654
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
+|+||+|+|.+. .+.++++.+.+.+++++++|+.||+.|.+++++.+.+++. | +.++.+|..
T Consensus 60 ~dvvi~~v~~~~--------------~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~--g--~~~~dapvs 121 (301)
T PRK09599 60 PRVVWLMVPAGE--------------ITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK--G--IHFVDVGTS 121 (301)
T ss_pred CCEEEEEecCCc--------------HHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc--C--CEEEeCCCC
Confidence 699999998532 3567778888889999999999999998888887777665 2 344688877
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC---CcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE---DRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (362)
..+..+..+ . .+++||+ ++++++++++|+.+... ..++.++++.+..+|+++|.+....+..+.|...
T Consensus 122 G~~~~a~~g---~-~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~ 192 (301)
T PRK09599 122 GGVWGLERG---Y-CLMIGGD-----KEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFE 192 (301)
T ss_pred cCHHHHhcC---C-eEEecCC-----HHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555433 2 4788987 78899999999998731 3466788999999999999999999999999999
Q ss_pred HHHH--hCCCHHHHHHHhcCCCCCCCCCc-------cCCCCCc-ccChhHh---HHHHHHHHHhCCCchhHHHHHHH
Q 017997 236 LCEA--TGANVSQVAFAVGTDSRIGPKFL-------NASVGFG-GSCFQKD---ILNLVYICECNGLPEVAEYWKQV 299 (362)
Q Consensus 236 l~~~--~g~d~~~v~~~~~~~~~i~~~~~-------~~g~g~g-g~cl~kD---~~~l~~~a~~~g~~~~~~~~~~~ 299 (362)
++++ .|+|+.++.+++.....+++.++ .-.+.+. -.-+-|| .+.....|.+.|++ .|.+.++
T Consensus 193 l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~kd~~~~~~~~~~A~~~~~~--~P~~~~a 267 (301)
T PRK09599 193 LLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLDEISGYVEDSGEGRWTVEEAIDLAVP--APVIAAA 267 (301)
T ss_pred HHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCcHHHHHHHHHHcCCC--HHHHHHH
Confidence 9999 99999999999986431111111 1112221 0122455 48888899999999 7777764
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-23 Score=188.22 Aligned_cols=221 Identities=24% Similarity=0.306 Sum_probs=183.4
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-CCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-QLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
+|||+|||.|.||+++|..|+++ ||+|.+|.++++.++.|++. .++-|.|+.. ...++.+++|+.++++++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n--g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~------lp~~l~at~Dl~~a~~~a 72 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN--GHEVRLWGRDEEIVAEINETRENPKYLPGIL------LPPNLKATTDLAEALDGA 72 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc--CCeeEEEecCHHHHHHHHhcCcCccccCCcc------CCcccccccCHHHHHhcC
Confidence 68999999999999999999999 99999999999999999986 4555666543 356799999999999999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-CccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
|+|+++||+. .+.++++++..+++++.+++..|+ +.++|.+.+.+++++..+...+.++++|.+
T Consensus 73 d~iv~avPs~---------------~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~ 137 (329)
T COG0240 73 DIIVIAVPSQ---------------ALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF 137 (329)
T ss_pred CEEEEECChH---------------HHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH
Confidence 9999999863 578999999888999999988888 888898999988887754334788999999
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEE-eCChhHHHHH-----------------HHHHh
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRIL-TTNLWSAELS-----------------KLAAN 220 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ae~~-----------------Kl~~N 220 (362)
..+-.. ..|+.+++++.+ ++..+.++.+|.+-. .+++ ..|+...|+. ++..|
T Consensus 138 A~EVa~----g~pta~~vas~d----~~~a~~v~~~f~~~~--Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~N 207 (329)
T COG0240 138 AKEVAQ----GLPTAVVVASND----QEAAEKVQALFSSPY--FRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDN 207 (329)
T ss_pred HHHHhc----CCCcEEEEecCC----HHHHHHHHHHhCCCc--EEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 876443 567778888874 788899999998732 3444 4687665554 35578
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 017997 221 AFLAQRISSVNAMSALCEATGANVSQVAFAVGTD 254 (362)
Q Consensus 221 ~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~ 254 (362)
+-.++....++||.+|...+|.++++++.+.|..
T Consensus 208 akaalitrGL~Em~rlg~~lG~~~~T~~gLsGlG 241 (329)
T COG0240 208 AKAALITRGLAEMTRLGVALGAKPETFMGLSGLG 241 (329)
T ss_pred HHHHHHHhHHHHHHHHHHHhCCCcchhccccccc
Confidence 8889999999999999999999999988887753
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-22 Score=187.11 Aligned_cols=248 Identities=17% Similarity=0.172 Sum_probs=186.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh---hhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK---HVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~---a~~~ 78 (362)
|||+|||+|.||.++|.+|+++ ||+|++||+++++++.+.+.. ....+++++ .+..
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~--g~~V~~~dr~~~~~~~l~~~g-------------------~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR--GHDCVGYDHDQDAVKAMKEDR-------------------TTGVANLRELSQRLSA 59 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcC-------------------CcccCCHHHHHhhcCC
Confidence 7999999999999999999999 999999999999999887632 111233333 3457
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
+|+||+|||++ .+.++++++.+.++++++|++.||..|.++.++...+++. | +.++.+|..
T Consensus 60 ~dvIi~~vp~~---------------~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~--g--~~~vda~vs 120 (298)
T TIGR00872 60 PRVVWVMVPHG---------------IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEK--G--IHLLDCGTS 120 (298)
T ss_pred CCEEEEEcCch---------------HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhc--C--CeEEecCCC
Confidence 89999999853 3578889999999999999999998888887776666654 2 345677765
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC--CcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE--DRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (362)
.++..+..+ ..+++||+ +++.+.++++|+.+... ..++.++.+.+..+|+++|.+...++..+.|...+
T Consensus 121 Gg~~~a~~G----~~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l 191 (298)
T TIGR00872 121 GGVWGRERG----YCFMIGGD-----GEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEI 191 (298)
T ss_pred CCHHHHhcC----CeeeeCCC-----HHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444332 24778987 78999999999998742 24667888999999999999999999999999999
Q ss_pred HHHh--CCCHHHHHHHhcCCCCCCCCCc---------cCC-CCCccc-ChhHhHHHHHHHHHhCCCchhHHHHHHHH
Q 017997 237 CEAT--GANVSQVAFAVGTDSRIGPKFL---------NAS-VGFGGS-CFQKDILNLVYICECNGLPEVAEYWKQVI 300 (362)
Q Consensus 237 ~~~~--g~d~~~v~~~~~~~~~i~~~~~---------~~g-~g~gg~-cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (362)
+++. |+|++++.+.++...-+.+.++ +|. +.|-.. --.+|.+..+..|.+.|+| .|.+.+++
T Consensus 192 ~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~a~~~g~p--~P~~~~al 266 (298)
T TIGR00872 192 LRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEFSGRVSDSGEGRWTVIAAIDLGVP--APVIATSL 266 (298)
T ss_pred HHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHHHHHHHhhccHHHHHHHHHHhCCC--HHHHHHHH
Confidence 9997 5799999999887542222111 111 112211 1345667788888889998 77777655
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=196.72 Aligned_cols=210 Identities=13% Similarity=0.108 Sum_probs=170.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc---
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--- 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--- 77 (362)
|++|+|||+|.||.+||.+|+++ ||+|++|||++++++.+++.... + ...+..+++++++++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~--G~~V~v~dr~~~~~~~l~~~~~~---~----------g~~i~~~~s~~e~v~~l~ 65 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR--GFKISVYNRTYEKTEEFVKKAKE---G----------NTRVKGYHTLEELVNSLK 65 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhhhh---c----------CCcceecCCHHHHHhcCC
Confidence 67999999999999999999999 99999999999999988752100 0 012456778888765
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
++|+||+|||.+ ..+.++++++.+++.++++||+.||..+..+.+....+.+. | +.++.+|.
T Consensus 66 ~~d~Iil~v~~~--------------~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~--G--i~fldapV 127 (470)
T PTZ00142 66 KPRKVILLIKAG--------------EAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEK--G--ILYLGMGV 127 (470)
T ss_pred CCCEEEEEeCCh--------------HHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHc--C--CeEEcCCC
Confidence 589999998743 35788889999999999999999998777777766666654 2 34578887
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC-----CcEEeCChhHHHHHHHHHhHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-----DRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
..++..+..+ +.+++||+ +++.++++++|+.+..+ ...++++.+.+..+|+++|.+.+..+..+.|
T Consensus 128 SGG~~gA~~G----~~lm~GG~-----~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaE 198 (470)
T PTZ00142 128 SGGEEGARYG----PSLMPGGN-----KEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISE 198 (470)
T ss_pred CCCHHHHhcC----CEEEEeCC-----HHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 7766555432 36899997 78999999999998742 0356788899999999999999999999999
Q ss_pred HHHHHH-HhCCCHHHHHHHhc
Q 017997 233 MSALCE-ATGANVSQVAFAVG 252 (362)
Q Consensus 233 ~~~l~~-~~g~d~~~v~~~~~ 252 (362)
...+++ ..|+|++++.+.+.
T Consensus 199 a~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 199 SYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred HHHHHHhhcCCCHHHHHHHHH
Confidence 999998 69999999988873
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=178.61 Aligned_cols=275 Identities=16% Similarity=0.133 Sum_probs=185.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
+|||+|||+|.||+++|..|+++ ||+|++|++++++.+.+++.+ ...+.++.. ...++..+++++++++++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~--G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~------~~~~~~~~~~~~e~~~~a 75 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK--GVPVRLWARRPEFAAALAAERENREYLPGVA------LPAELYPTADPEEALAGA 75 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhCcccccCCCCc------CCCCeEEeCCHHHHHcCC
Confidence 58999999999999999999999 999999999999998887532 112212210 112366778888888999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-Ccccc--HHHHHHHHHhccCCCceEEeeCC
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKT--AEAIEKILTHNSKGIKFQILSNP 156 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~gt--~~~l~~~l~~~~~g~~~~v~~~P 156 (362)
|+||+|+|+. .++++ .+.++++.+++..++ +.+.+ .+.+.+.+++... ..+.+..+|
T Consensus 76 D~Vi~~v~~~---------------~~~~v----~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~~~~gP 135 (328)
T PRK14618 76 DFAVVAVPSK---------------ALRET----LAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQ-ARVAVLSGP 135 (328)
T ss_pred CEEEEECchH---------------HHHHH----HHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcC-CCeEEEECc
Confidence 9999999852 23333 355667778887787 66665 5667766654111 123455677
Q ss_pred cccccCccccccCCCC-eEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHH-----------------HHHH
Q 017997 157 EFLAEGTAIQDLFNPD-RVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAEL-----------------SKLA 218 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~-~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~-----------------~Kl~ 218 (362)
....+... ..+. .++.|++ ++..++++++|+..+. ..+...|+...+| .|+.
T Consensus 136 ~~a~~~~~----~~~~~~~~~~~~-----~~~~~~v~~ll~~~~~-~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~ 205 (328)
T PRK14618 136 NHAEEIAR----FLPAATVVASPE-----PGLARRVQAAFSGPSF-RVYTSRDRVGVELGGALKNVIALAAGMVDGLKLG 205 (328)
T ss_pred cHHHHHHc----CCCeEEEEEeCC-----HHHHHHHHHHhCCCcE-EEEecCCccchhhhHHHHHHHHHHHHHHHHhCCC
Confidence 66554322 1121 2344443 6788999999998652 2333345444444 4566
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC-------CCCCCCC-----ccC-------CCCCcccChhHhHHH
Q 017997 219 ANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTD-------SRIGPKF-----LNA-------SVGFGGSCFQKDILN 279 (362)
Q Consensus 219 ~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~-------~~i~~~~-----~~~-------g~g~gg~cl~kD~~~ 279 (362)
+|...++..+.++|+..+++++|+|++++++.++.. +..+.++ +-. .++|.-.-..||..+
T Consensus 206 ~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~ 285 (328)
T PRK14618 206 DNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKA 285 (328)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHH
Confidence 788889999999999999999999999999998741 1111111 001 123444567899999
Q ss_pred HHHHHHhCCCchhHHHHHHHHHH-H-HHhHHHHHHHHH
Q 017997 280 LVYICECNGLPEVAEYWKQVIKI-N-DYQKSRFVNRVV 315 (362)
Q Consensus 280 l~~~a~~~g~~~~~~~~~~~~~~-N-~~~~~~~~~~~~ 315 (362)
+.+++++.+++ .|+++.+.++ + +.-|+..++.++
T Consensus 286 ~~~la~~~~~~--~Pl~~~~~~~~~~~~~~~~~~~~~~ 321 (328)
T PRK14618 286 LDAWAKAHGHD--LPIVEAVARVARGGWDPLAGLRSLM 321 (328)
T ss_pred HHHHHHHhCCC--CCHHHHHHHHHhCCCCHHHHHHHHh
Confidence 99999999998 7888877753 2 234565555554
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=167.16 Aligned_cols=152 Identities=20% Similarity=0.264 Sum_probs=120.9
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
||||+|||+|.||.+||.+|+++ ||+|++||+++++.+.+.+. ..+.++++.++++++|
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~-------------------g~~~~~s~~e~~~~~d 59 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA--GYEVTVYDRSPEKAEALAEA-------------------GAEVADSPAEAAEQAD 59 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT--TTEEEEEESSHHHHHHHHHT-------------------TEEEESSHHHHHHHBS
T ss_pred CCEEEEEchHHHHHHHHHHHHhc--CCeEEeeccchhhhhhhHHh-------------------hhhhhhhhhhHhhccc
Confidence 89999999999999999999999 99999999999999988752 3778899999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHH--HHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARV--IADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~--i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
+||+|||.+ ..+++++.+ +.+.+++++++|++||+.|.+++++.+.+++.+ +.++.+|..
T Consensus 60 vvi~~v~~~--------------~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g----~~~vdapV~ 121 (163)
T PF03446_consen 60 VVILCVPDD--------------DAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG----VRYVDAPVS 121 (163)
T ss_dssp EEEE-SSSH--------------HHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT----EEEEEEEEE
T ss_pred ceEeecccc--------------hhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc----ceeeeeeee
Confidence 999999853 357888888 999999999999999999999999988887753 466788876
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~ 199 (362)
..+..+..... .+++||+ ++++++++++|+.++
T Consensus 122 Gg~~~a~~g~l---~~~~gG~-----~~~~~~~~~~l~~~~ 154 (163)
T PF03446_consen 122 GGPPGAEEGTL---TIMVGGD-----EEAFERVRPLLEAMG 154 (163)
T ss_dssp SHHHHHHHTTE---EEEEES------HHHHHHHHHHHHHHE
T ss_pred cccccccccce---EEEccCC-----HHHHHHHHHHHHHHh
Confidence 65544433322 4788987 789999999999987
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=185.20 Aligned_cols=206 Identities=13% Similarity=0.151 Sum_probs=163.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh---cCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV---SEA 79 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~---~~a 79 (362)
+|+|||+|.||.+||.+|+++ ||+|++||+++++++.+.+.... ...+...+++++.+ +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~--G~~V~v~drt~~~~~~l~~~~~~--------------g~~~~~~~s~~e~v~~l~~~ 64 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH--GFTVSVYNRTPEKTDEFLAEHAK--------------GKKIVGAYSIEEFVQSLERP 64 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHhhccC--------------CCCceecCCHHHHHhhcCCC
Confidence 589999999999999999999 99999999999999988752100 01133445555544 578
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|+||+|||.+ ..+.++++++.++++++++||+.||..+..+.+..+.+.+. | +.++.+|...
T Consensus 65 dvIil~v~~~--------------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~--g--i~fvdapVsG 126 (467)
T TIGR00873 65 RKIMLMVKAG--------------APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAK--G--ILFVGSGVSG 126 (467)
T ss_pred CEEEEECCCc--------------HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhc--C--CEEEcCCCCC
Confidence 9999999853 24678889999999999999999998777766665556554 2 3567888777
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCC-----cEEeCChhHHHHHHHHHhHHHHHHHHHHHHHH
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-----RILTTNLWSAELSKLAANAFLAQRISSVNAMS 234 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (362)
++..+.++ +.+++||+ +++.++++++|+.+..+. .+++++.+.+..+|+++|.+.+..+..+.|..
T Consensus 127 G~~gA~~G----~~im~GG~-----~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~ 197 (467)
T TIGR00873 127 GEEGARKG----PSIMPGGS-----AEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAY 197 (467)
T ss_pred CHHHHhcC----CcCCCCCC-----HHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655443 25788987 789999999999987421 25678889999999999999999999999999
Q ss_pred HHHH-HhCCCHHHHHHHh
Q 017997 235 ALCE-ATGANVSQVAFAV 251 (362)
Q Consensus 235 ~l~~-~~g~d~~~v~~~~ 251 (362)
.+++ +.|+|++++.+.+
T Consensus 198 ~ll~~~~g~~~~~l~~v~ 215 (467)
T TIGR00873 198 DILKDGLGLSNEEIAEVF 215 (467)
T ss_pred HHHHHhcCCCHHHHHHHH
Confidence 9985 6999999999988
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=169.48 Aligned_cols=252 Identities=15% Similarity=0.073 Sum_probs=165.7
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHhhhcCCCEEEec
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----------LPIYEPGLDGVVKQCRGKNLFFST 70 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (362)
||+|+|||+|.||.++|..|+++ ||+|++||++++.++.+++.. -.+.+..... ..+++++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~--G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~-----~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA--GHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDA-----VLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC--CCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHH-----HhcCeEEEC
Confidence 57999999999999999999999 999999999998887654210 0000000111 124578899
Q ss_pred CHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCce
Q 017997 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF 150 (362)
Q Consensus 71 d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~ 150 (362)
++++++++||+|++|+|... ......++.+.+..+++.++ .+||.+ -....+.+.+... ..
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~-------------~~k~~~~~~l~~~~~~~~ii-~ssts~-~~~~~la~~~~~~----~~ 135 (308)
T PRK06129 75 SLADAVADADYVQESAPENL-------------ELKRALFAELDALAPPHAIL-ASSTSA-LLASAFTEHLAGR----ER 135 (308)
T ss_pred cHHHhhCCCCEEEECCcCCH-------------HHHHHHHHHHHHhCCCcceE-EEeCCC-CCHHHHHHhcCCc----cc
Confidence 99888899999999998542 12345666776666555544 444443 3455565554332 23
Q ss_pred EEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHH
Q 017997 151 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSV 230 (362)
Q Consensus 151 ~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (362)
+++.+|-. |.... +-..++++..+ +++++++++++++.++ +.++++.....+ ++.|. +..+++
T Consensus 136 ~~~~hp~~--p~~~~-----~lveiv~~~~t--~~~~~~~~~~~~~~lG-~~~v~v~~~~~G----~i~nr---l~~a~~ 198 (308)
T PRK06129 136 CLVAHPIN--PPYLI-----PVVEVVPAPWT--APATLARAEALYRAAG-QSPVRLRREIDG----FVLNR---LQGALL 198 (308)
T ss_pred EEEEecCC--CcccC-----ceEEEeCCCCC--CHHHHHHHHHHHHHcC-CEEEEecCCCcc----HHHHH---HHHHHH
Confidence 56667742 22211 11235664433 5889999999999987 345655433333 24455 356999
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcCCCC-----CCCCC--ccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHH
Q 017997 231 NAMSALCEATGANVSQVAFAVGTDSR-----IGPKF--LNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWK 297 (362)
Q Consensus 231 nE~~~l~~~~g~d~~~v~~~~~~~~~-----i~~~~--~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~ 297 (362)
+|...++++.|+|++++.+++..... .|+.. -..++|+-...+.||..+..+.+++.+.+ .++++
T Consensus 199 ~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~--~~~~~ 270 (308)
T PRK06129 199 REAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQP--VPWDG 270 (308)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCCC--chhhH
Confidence 99999999999999999999865431 12110 01234555678899999999999988877 44443
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=171.83 Aligned_cols=220 Identities=17% Similarity=0.143 Sum_probs=166.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCC-CCC-ChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPI-YEP-GLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~-~e~-~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
+|||+|||+|.||+.+|..|+++ | +|++|.+++++++.+++.+.+. +.+ +.. ...++.+++|+++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~--g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~------l~~~i~~t~d~~~a~~~ 77 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR--G-PTLQWVRSAETADDINDNHRNSRYLGNDVV------LSDTLRATTDFAEAANC 77 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--C-CEEEEeCCHHHHHHHHhcCCCcccCCCCcc------cCCCeEEECCHHHHHhc
Confidence 58999999999999999999998 7 6889999999999999865332 222 111 12457889999888999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEee-CCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS-TVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+|+||+|||+. ++.++++++.++++++++|+..+ .++.++.+.+.+.+++..++..+.+.++|.
T Consensus 78 aDlVilavps~---------------~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~ 142 (341)
T PRK12439 78 ADVVVMGVPSH---------------GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPN 142 (341)
T ss_pred CCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCC
Confidence 99999999842 57889999999998887665444 477777766766666543223456778898
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHH---------------
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF--------------- 222 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~--------------- 222 (362)
+..+... ..+..+++++.+ ++..+.++++|++-. ...+...|+...||.|.+-|.+
T Consensus 143 ~a~ev~~----g~~t~~via~~~----~~~~~~v~~lf~~~~-~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n 213 (341)
T PRK12439 143 IAREVAE----GYAAAAVLAMPD----QHLATRLSPLFRTRR-FRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGEN 213 (341)
T ss_pred HHHHHHc----CCCeEEEEEeCC----HHHHHHHHHHhCCCC-EEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 7765332 234456677663 678899999998753 1234457999999999886663
Q ss_pred --HHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 017997 223 --LAQRISSVNAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 223 --~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
.++....++|+.++++.+|.+++++....|.
T Consensus 214 ~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G~ 246 (341)
T PRK12439 214 TRAMVIARALREMTKLGVAMGGNPETFAGLAGM 246 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccccchh
Confidence 4667789999999999999999999988775
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=168.76 Aligned_cols=252 Identities=15% Similarity=0.185 Sum_probs=170.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||.++|..|+++ ||+|++|++++. ++++++++++|+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~--G~~V~~~~r~~~--------------------------------~~~~~~~~~adv 50 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN--GHRVRVWSRRSG--------------------------------LSLAAVLADADV 50 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEeCCCC--------------------------------CCHHHHHhcCCE
Confidence 7999999999999999999999 999999999731 245566889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-cCCCCEEEEeeC-CccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-SKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~-l~~~~iVv~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
||+|+|++ .+.++++.+.++ ++++++|+..|+ +.|.+.+.+...+........+.++++|...
T Consensus 51 vi~~vp~~---------------~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a 115 (308)
T PRK14619 51 IVSAVSMK---------------GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLS 115 (308)
T ss_pred EEEECChH---------------HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcH
Confidence 99999852 457777888764 677888888776 8887766665555543222233344666543
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHH-----------------HHHHhHH
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELS-----------------KLAANAF 222 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~-----------------Kl~~N~~ 222 (362)
.+-. . ..+..+++++.+ .+..+.++++|+..+. ..+...|+...++. |+..|..
T Consensus 116 ~ei~---~-~~~~~~~~ag~~----~~~~~~v~~ll~~~~~-~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~ 186 (308)
T PRK14619 116 KEIQ---Q-GLPAATVVASRD----LAAAETVQQIFSSERF-RVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAK 186 (308)
T ss_pred HHHh---c-CCCeEEEEEeCC----HHHHHHHHHHhCCCcE-EEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHH
Confidence 2200 0 112223344442 7889999999998641 23444564433333 3667888
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCC-CC---C--CCCccCCCCCcccCh----------------hHhHHHH
Q 017997 223 LAQRISSVNAMSALCEATGANVSQVAFAVGTDS-RI---G--PKFLNASVGFGGSCF----------------QKDILNL 280 (362)
Q Consensus 223 ~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~~-~i---~--~~~~~~g~g~gg~cl----------------~kD~~~l 280 (362)
.++....++|+..+++++|+|+.++.+..+... .. + .+-+. +||.-.-. .||...+
T Consensus 187 ~a~~~~~~~E~~~l~~~~G~~~~t~~~~~g~gd~~~t~~~~~~rn~~--~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~ 264 (308)
T PRK14619 187 AALVTRALPEMIRVGTHLGAQTETFYGLSGLGDLLATCTSPLSRNYQ--VGYGLAQGKSLEQILAELEGTAEGVNTANVL 264 (308)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccccccchhhhheeecCCCCccHH--HHHHHHCCCCHHHHHHhcCCEeecHHHHHHH
Confidence 888999999999999999999999987543321 00 0 01112 23211122 7899999
Q ss_pred HHHHHhCCCchhHHHHHHHHHH--HHHhHHHHHHHHH
Q 017997 281 VYICECNGLPEVAEYWKQVIKI--NDYQKSRFVNRVV 315 (362)
Q Consensus 281 ~~~a~~~g~~~~~~~~~~~~~~--N~~~~~~~~~~~~ 315 (362)
.+++++.|++ .|+++++.++ |+--|+.+++.++
T Consensus 265 ~~~~~~~~~~--~Pl~~~v~~i~~~~~~~~~~~~~l~ 299 (308)
T PRK14619 265 VQLAQQQNIA--VPITEQVYRLLQGEITPQQALEELM 299 (308)
T ss_pred HHHHHHcCCC--CCHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999998 7888877753 3334555555554
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.5e-19 Score=167.24 Aligned_cols=221 Identities=16% Similarity=0.183 Sum_probs=168.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCC--------CeEEEEeC-----CHHHHHHHHcCC-CCCCCCChHHHHhhhcCCCEEE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPS--------IEVAVVDI-----SVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFF 68 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G--------~~V~~~d~-----~~~~~~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~ 68 (362)
||+|||.|.||+++|..|+++ | |+|.+|.+ +++..+.+++.+ .+.+.|+.. ...++++
T Consensus 1 kI~VIGaG~wGtALA~~la~n--g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~------Lp~~i~a 72 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN--ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIK------LPANLVA 72 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCc------CCCCeEE
Confidence 699999999999999999998 8 99999999 778888888754 344445532 2456899
Q ss_pred ecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-Cccc--cHHHHHHHHHhcc
Q 017997 69 STDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVK--TAEAIEKILTHNS 145 (362)
Q Consensus 69 t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~g--t~~~l~~~l~~~~ 145 (362)
++|++++++++|+||++||+ ..+.++++++.++++++++++..+. +.+. +...+.+.+++..
T Consensus 73 t~dl~eal~~ADiIIlAVPs---------------~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l 137 (342)
T TIGR03376 73 VPDLVEAAKGADILVFVIPH---------------QFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL 137 (342)
T ss_pred ECCHHHHHhcCCEEEEECCh---------------HHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh
Confidence 99999999999999999985 2578889999999988888877776 6665 6666777666654
Q ss_pred CCCceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEE-eCChhHHHHHH--------
Q 017997 146 KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRIL-TTNLWSAELSK-------- 216 (362)
Q Consensus 146 ~g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ae~~K-------- 216 (362)
+..+.++++|.+..+-.. ..|..+++++.+...-.+..+.++++|++-. .+++ ..|+...|+..
T Consensus 138 -~~~~~~lsGP~~A~Eva~----~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~--frv~~s~Dv~GvEl~galKNv~AI 210 (342)
T TIGR03376 138 -GIPCGVLSGANLANEVAK----EKFSETTVGYRDPADFDVDARVLKALFHRPY--FRVNVVDDVAGVEIAGALKNVVAI 210 (342)
T ss_pred -CCCeEEeeCcchHHHHHc----CCCceEEEEeCCCcchHHHHHHHHHHhCCCC--EEEEEcCCcccchhhHHHHHHHHH
Confidence 346778999998876442 5666778887731000678899999998632 2444 46877666553
Q ss_pred ---------HHHhHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHhcC
Q 017997 217 ---------LAANAFLAQRISSVNAMSALCEATGANVS--QVAFAVGT 253 (362)
Q Consensus 217 ---------l~~N~~~~~~ia~~nE~~~l~~~~g~d~~--~v~~~~~~ 253 (362)
+-.|+..++....++||.++++.+|.+++ ++....|.
T Consensus 211 a~Gi~~Gl~~g~N~~aalitrgl~Em~~l~~~~g~~~~~~T~~gl~G~ 258 (342)
T TIGR03376 211 AAGFVDGLGWGDNAKAAVMRRGLLEMIKFARMFFPTGEVTFTFESCGV 258 (342)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchh
Confidence 33677788899999999999999999877 78776664
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-19 Score=168.02 Aligned_cols=218 Identities=16% Similarity=0.182 Sum_probs=168.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-------CeEEEEeCCHH-----HHHHHHcCC-CCCCCCChHHHHhhhcCCCEEE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-------IEVAVVDISVS-----RINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFF 68 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-------~~V~~~d~~~~-----~~~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~ 68 (362)
|||+|||.|.||+++|..|+++ | |+|.+|.++++ .++.+++.+ ++.|.|+.. +..++.+
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n--~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~------Lp~ni~~ 83 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN--TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIK------LPDNIVA 83 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCc------CCCceEE
Confidence 7999999999999999999998 6 89999999986 488888654 555667654 3567999
Q ss_pred ecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh--hcCCCCEEEEeeC-CccccH--HHHHHHHHh
Q 017997 69 STDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD--VSKSDKIVVEKST-VPVKTA--EAIEKILTH 143 (362)
Q Consensus 69 t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~--~l~~~~iVv~~ST-v~~gt~--~~l~~~l~~ 143 (362)
++|.+++++++|+|+++||+ ..+.++++++.+ +++++.+|+..+. +.+.+. ..+.+.+++
T Consensus 84 tsdl~eav~~aDiIvlAVPs---------------q~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e 148 (365)
T PTZ00345 84 VSDLKEAVEDADLLIFVIPH---------------QFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE 148 (365)
T ss_pred ecCHHHHHhcCCEEEEEcCh---------------HHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH
Confidence 99999999999999999985 257888999988 7777777766665 665553 445666655
Q ss_pred ccCCCceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEE-eCChhHHHHHH------
Q 017997 144 NSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRIL-TTNLWSAELSK------ 216 (362)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ae~~K------ 216 (362)
.. +..+.++++|.+..+-.. ..|..+++++.+ ++..+.++++|++-. .+++ ..|+...|+..
T Consensus 149 ~l-~~~~~~LsGPs~A~Eva~----~~pt~~vias~~----~~~a~~~~~lf~~~~--frvy~s~Dv~GvEl~galKNvi 217 (365)
T PTZ00345 149 EL-GIPCCALSGANVANDVAR----EEFSEATIGCED----KDDALIWQRLFDRPY--FKINCVPDVIGVEVCGALKNII 217 (365)
T ss_pred Hh-CCCeEEEECCCHHHHHHc----CCCcEEEEEeCC----HHHHHHHHHHhCCCc--EEEEEcCCcccchhhHHHHHHH
Confidence 43 235678899988876432 567778888774 788899999998632 3444 46876655543
Q ss_pred -----------HHHhHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHhcC
Q 017997 217 -----------LAANAFLAQRISSVNAMSALCEATG--ANVSQVAFAVGT 253 (362)
Q Consensus 217 -----------l~~N~~~~~~ia~~nE~~~l~~~~g--~d~~~v~~~~~~ 253 (362)
+..|+..++....++||.+|++.+| .++++++.+.|.
T Consensus 218 AIa~Gi~dGl~~G~N~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG~ 267 (365)
T PTZ00345 218 ALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGL 267 (365)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhCCCCCccchhccchH
Confidence 4477888899999999999999997 489999987775
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=166.27 Aligned_cols=264 Identities=18% Similarity=0.196 Sum_probs=167.0
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCC-ChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEP-GLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~-~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|||+|.||+++|..|+++ ||+|++||+++ ..+.+++....+..+ +.+.. ...+++.++++.+ ++.++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~--G~~V~~~~r~~-~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~ 74 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA--GADVTLIGRAR-IGDELRAHGLTLTDYRGRDVR---VPPSAIAFSTDPA-ALATA 74 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc--CCcEEEEecHH-HHHHHHhcCceeecCCCccee---cccceeEeccChh-hccCC
Confidence 58999999999999999999999 99999999975 357777644333221 11110 1123466677774 58899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|+||+|||++. +.++++.+.+.++++++|+.. +...+..+.+.+.+.+... ..-.+..+....
T Consensus 75 D~vil~vk~~~---------------~~~~~~~l~~~~~~~~iii~~-~nG~~~~~~l~~~~~~~~~-~~g~~~~~~~~~ 137 (341)
T PRK08229 75 DLVLVTVKSAA---------------TADAAAALAGHARPGAVVVSF-QNGVRNADVLRAALPGATV-LAGMVPFNVISR 137 (341)
T ss_pred CEEEEEecCcc---------------hHHHHHHHHhhCCCCCEEEEe-CCCCCcHHHHHHhCCCCcE-EEEEEEEEEEec
Confidence 99999998642 356788888888888876643 4556666666666543210 000001111233
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHH-------------
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQR------------- 226 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~------------- 226 (362)
.||...+. . ..++.++.. +..+.+.++|+..+. ...+..|+...+|.|++.|++..+.
T Consensus 138 ~pg~~~~~-~-~g~l~~~~~------~~~~~~~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~ 208 (341)
T PRK08229 138 GPGAFHQG-T-SGALAIEAS------PALRPFAAAFARAGL-PLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQ 208 (341)
T ss_pred CCceEEec-C-CCceEecCC------chHHHHHHHHHhcCC-CceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcC
Confidence 44544321 1 123555522 346788899987652 3456689999999999999754444
Q ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHhcCC--------CC----CCCCCccCCCCCcccChhHhHH---------
Q 017997 227 -------ISSVNAMSALCEATGANVSQVAFAVGTD--------SR----IGPKFLNASVGFGGSCFQKDIL--------- 278 (362)
Q Consensus 227 -------ia~~nE~~~l~~~~g~d~~~v~~~~~~~--------~~----i~~~~~~~g~g~gg~cl~kD~~--------- 278 (362)
...+.|...++++.|+++..+.++.... .. +........+. ..+.+.+|..
T Consensus 209 ~~~~~~~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sm~~D~~~~r~tEi~~ 287 (341)
T PRK08229 209 RSYRRCLALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPL-ARSSMSDDLAAGRATEIDW 287 (341)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCc-cCchHHHHHHcCCcchHHH
Confidence 4789999999999999865433221110 00 00001110111 1256999999
Q ss_pred ---HHHHHHHhCCCchhHHHHHHHH
Q 017997 279 ---NLVYICECNGLPEVAEYWKQVI 300 (362)
Q Consensus 279 ---~l~~~a~~~g~~~~~~~~~~~~ 300 (362)
++++.|+++|++ .|..+.+.
T Consensus 288 i~G~i~~~a~~~gv~--~P~~~~~~ 310 (341)
T PRK08229 288 INGEIVRLAGRLGAP--APVNARLC 310 (341)
T ss_pred HhhHHHHHHHHcCCC--CcHHHHHH
Confidence 799999999998 66555443
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=169.40 Aligned_cols=196 Identities=14% Similarity=0.175 Sum_probs=162.1
Q ss_pred hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc---CCcEEEEeccC
Q 017997 12 VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS---EADIVFVSVNT 88 (362)
Q Consensus 12 ~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~---~aDvVii~vpt 88 (362)
||.+||.+|+++ ||+|++|||++++++.+.+..-. ..++..+.+++++++ .+|+||+|||.
T Consensus 1 MG~~mA~nL~~~--G~~V~v~nrt~~~~~~l~~~~g~--------------~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~ 64 (459)
T PRK09287 1 MGKNLALNIASH--GYTVAVYNRTPEKTDEFLAEEGK--------------GKKIVPAYTLEEFVASLEKPRKILLMVKA 64 (459)
T ss_pred CcHHHHHHHHhC--CCeEEEECCCHHHHHHHHHhhCC--------------CCCeEeeCCHHHHHhhCCCCCEEEEECCC
Confidence 899999999999 99999999999999988752000 013667788888766 48999999986
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccccCcccccc
Q 017997 89 PTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDL 168 (362)
Q Consensus 89 p~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~g~a~~~~ 168 (362)
+ ..+.++++++.+.+.++++||+.||..+..+++..+.+++. | +.++.+|...++..+.++
T Consensus 65 g--------------~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~--G--i~fvdapVSGG~~gA~~G- 125 (459)
T PRK09287 65 G--------------APVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEK--G--IHFIGMGVSGGEEGALHG- 125 (459)
T ss_pred c--------------hHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhc--C--CeEEecCCCCCHHHHhcC-
Confidence 4 25688889999999999999999998888888777777664 2 345788877776665433
Q ss_pred CCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCc-------EEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHH-Hh
Q 017997 169 FNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDR-------ILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE-AT 240 (362)
Q Consensus 169 ~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~-~~ 240 (362)
+.+++||+ +++.++++++|+.+.. .. .++++.+.+..+|+++|.+.+..+..+.|...+++ .+
T Consensus 126 ---~siM~GG~-----~~a~~~~~piL~~ia~-~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~ 196 (459)
T PRK09287 126 ---PSIMPGGQ-----KEAYELVAPILEKIAA-KVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGL 196 (459)
T ss_pred ---CEEEEeCC-----HHHHHHHHHHHHHHhh-hhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36899997 7899999999999873 22 56788899999999999999999999999999999 49
Q ss_pred CCCHHHHHHHh
Q 017997 241 GANVSQVAFAV 251 (362)
Q Consensus 241 g~d~~~v~~~~ 251 (362)
|+|++++.+++
T Consensus 197 Gl~~~~l~~v~ 207 (459)
T PRK09287 197 GLSAEEIADVF 207 (459)
T ss_pred CCCHHHHHHHH
Confidence 99999999888
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-18 Score=161.66 Aligned_cols=261 Identities=12% Similarity=0.034 Sum_probs=182.3
Q ss_pred ceEEEEcCCh--------------------hHHHHHHHHHHcCCCCeEEEEeCCHHHHH-----HHHcCCCCCCCCChHH
Q 017997 2 VKICCIGAGY--------------------VGGPTMAVIALKCPSIEVAVVDISVSRIN-----AWNSDQLPIYEPGLDG 56 (362)
Q Consensus 2 mkI~VIGlG~--------------------~G~~lA~~la~~~~G~~V~~~d~~~~~~~-----~l~~~~~~~~e~~l~~ 56 (362)
|||+|.|+|+ -|.+||.+|+++ ||+|++||++++.++ .+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a--G~~V~v~Dr~~~~l~~~~~~~l~~------------ 66 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA--GHDVVLAEPNRSILSEELWKKVED------------ 66 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC--CCeEEEEECCHHHhhHHHHHHHHH------------
Confidence 7999999994 588999999999 999999999987542 2222
Q ss_pred HHhhhcCCCEEEecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH-H
Q 017997 57 VVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA-E 135 (362)
Q Consensus 57 ~~~~~~~~~l~~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~-~ 135 (362)
.+++++++..+++++||+||+|+|++. .++++++.+.+.++++++|++.||+++.+. +
T Consensus 67 -------~Gi~~asd~~eaa~~ADvVIlaVP~~~--------------~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~ 125 (342)
T PRK12557 67 -------AGVKVVSDDAEAAKHGEIHILFTPFGK--------------KTVEIAKNILPHLPENAVICNTCTVSPVVLYY 125 (342)
T ss_pred -------CCCEEeCCHHHHHhCCCEEEEECCCcH--------------HHHHHHHHHHhhCCCCCEEEEecCCCHHHHHH
Confidence 236677788888899999999998531 357788899999999999999999988877 6
Q ss_pred HHHHHHHhccCCCceEEeeCCcccccCccccccCCCCeEEEecCC---CcchHHHHHHHHHHHhccCCCCcEEeCChhHH
Q 017997 136 AIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE---TPEGQKAVKALKDVYAHWVPEDRILTTNLWSA 212 (362)
Q Consensus 136 ~l~~~l~~~~~g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 212 (362)
.+.+.+........+ ...+|-.. +|.....+ .++.|+.. ...+++.+++++++|+.++ .++++.+.+.+
T Consensus 126 ~l~~~l~~~~~~~gi-~~~~p~~v-~Gae~g~l----~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G--~~v~~~~~g~~ 197 (342)
T PRK12557 126 SLEGELRTKRKDVGI-SSMHPAAV-PGTPQHGH----YVIAGKTTNGTELATEEQIEKCVELAESIG--KEPYVVPADVV 197 (342)
T ss_pred HHHHHhcccccccCe-eecCCccc-cccccchh----eEEeCCCcccccCCCHHHHHHHHHHHHHcC--CEEEEeCHHHH
Confidence 666666432111111 11233221 12111111 24444311 1123778899999999987 35666778999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchh
Q 017997 213 ELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEV 292 (362)
Q Consensus 213 e~~Kl~~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~ 292 (362)
..+|++.|.+.++.++...|...++++.|.++.++.+-+....-.+...+--.-|+.|--=.-||..|+..|+...+-+.
T Consensus 198 ~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (342)
T PRK12557 198 SAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMTLQTMASLVETSGVDGLLKALNPELLLRSASSMHLLEK 277 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCHHHHhhhHhhCCcchh
Confidence 99999999999999999999999999999999998887664321111111112244433223488999999998776555
Q ss_pred HHHHHHHHHHHHH
Q 017997 293 AEYWKQVIKINDY 305 (362)
Q Consensus 293 ~~~~~~~~~~N~~ 305 (362)
.+.+.+++++=+.
T Consensus 278 ~~~~~~~~~~~~~ 290 (342)
T PRK12557 278 QKDLDAALEILEN 290 (342)
T ss_pred hhhHHHHHHHHHH
Confidence 6677776665443
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=158.09 Aligned_cols=216 Identities=16% Similarity=0.221 Sum_probs=146.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCC-CCCChHHHHhhhcCCCEEEecCHHhhh-cCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPI-YEPGLDGVVKQCRGKNLFFSTDVEKHV-SEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~-~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~a 79 (362)
|||+|||+|.||+.+|..|+++ ||+|++|+++++.++.+++.+... +.++.. ...++++++++.+++ .++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~--g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~ 72 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK--KISVNLWGRNHTTFESINTKRKNLKYLPTCH------LPDNISVKSAIDEVLSDNA 72 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHHcCCCcccCCCCc------CCCCeEEeCCHHHHHhCCC
Confidence 7999999999999999999999 999999999999999998753221 122211 123577888888766 589
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh-hcCCCCEEEE-eeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~-~l~~~~iVv~-~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
|+||+|||+. ++.++++++.+ ++.+++.|+. ...+...+.....+.+.+..+...+.+..+|.
T Consensus 73 Dliiiavks~---------------~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~ 137 (326)
T PRK14620 73 TCIILAVPTQ---------------QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPS 137 (326)
T ss_pred CEEEEEeCHH---------------HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCc
Confidence 9999999842 46888999988 8877765543 33343332211222233222112334456776
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHH---------------
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF--------------- 222 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~--------------- 222 (362)
+..+... ..+..+++++.+ .+..+.+.++|+.-.- ......|+...+|.|++-|.+
T Consensus 138 ~a~~~~~----~~~~~~~~~~~~----~~~~~~l~~~l~~~~~-~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n 208 (326)
T PRK14620 138 FAKEIAE----KLPCSIVLAGQN----ETLGSSLISKLSNENL-KIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNN 208 (326)
T ss_pred HHHHHHc----CCCcEEEEecCC----HHHHHHHHHHHCCCCe-EEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCch
Confidence 5443221 234456666653 5566778888876431 233457999999999987763
Q ss_pred --HHHHHHHHHHHHHHHHHhCC--CHHHHHH
Q 017997 223 --LAQRISSVNAMSALCEATGA--NVSQVAF 249 (362)
Q Consensus 223 --~~~~ia~~nE~~~l~~~~g~--d~~~v~~ 249 (362)
.++....++|+..+++.+|. +++++..
T Consensus 209 ~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~g 239 (326)
T PRK14620 209 AHAAVITKGMNEIKTLYSAKNGSIDLNTLIG 239 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcchhhc
Confidence 45567889999999999987 7888854
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=161.51 Aligned_cols=211 Identities=18% Similarity=0.273 Sum_probs=146.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChH-----HHHhhhcCCCEEEecCHHhh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLD-----GVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~-----~~~~~~~~~~l~~t~d~~~a 75 (362)
+.||+|||+|.||.++|..|+++ ||+|++||++++.++.+++...+..+++.+ +.-.+....+++++++++++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 57899999999999999999999 999999999999999876532221111110 00000012457888999888
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--CCceEE
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GIKFQI 152 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g~~~~v 152 (362)
+++||+||+|+|++.+ ....++.++.+.+++++++ +++||+++..... .+..... |.+|
T Consensus 79 ~~~aD~Vi~avpe~~~-------------~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~-- 140 (288)
T PRK09260 79 VADADLVIEAVPEKLE-------------LKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHF-- 140 (288)
T ss_pred hcCCCEEEEeccCCHH-------------HHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEec--
Confidence 9999999999986421 2256677888889999876 7899998865332 2222111 2232
Q ss_pred eeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHH
Q 017997 153 LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 153 ~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
. +|....+ . ..++++..+ +++++++++++++.++ +.++++.+ ...++.|.+ ..+++||
T Consensus 141 ~-~Pv~~~~---------L-ve~v~g~~t--~~~~~~~~~~~l~~lg-~~~v~v~d-----~~Gf~~nRl---~~~~~~e 198 (288)
T PRK09260 141 F-NPVHKMK---------L-VELIRGLET--SDETVQVAKEVAEQMG-KETVVVNE-----FPGFVTSRI---SALVGNE 198 (288)
T ss_pred C-CCcccCc---------e-EEEeCCCCC--CHHHHHHHHHHHHHcC-CeEEEecC-----cccHHHHHH---HHHHHHH
Confidence 2 5654321 1 245666433 4889999999999987 34565543 345677774 4589999
Q ss_pred HHHHHHHhCCCHHHHHHHhcC
Q 017997 233 MSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 233 ~~~l~~~~g~d~~~v~~~~~~ 253 (362)
...+.++--.+++++..++-.
T Consensus 199 a~~~~~~gv~~~~~iD~~~~~ 219 (288)
T PRK09260 199 AFYMLQEGVATAEDIDKAIRL 219 (288)
T ss_pred HHHHHHcCCCCHHHHHHHHHh
Confidence 999998766889999998854
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=156.07 Aligned_cols=210 Identities=20% Similarity=0.189 Sum_probs=143.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHh-----hhcCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-----QCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~-----~~~~~~l~~t~d~~~a~ 76 (362)
.||+|||+|.||..+|..|+.+ |++|++||++++.++.+.+... ..++.+.+ ....+++++++++++++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~i~~~~~l~~av 81 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVA----NAWPALERQGLAPGASPARLRFVATIEACV 81 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCChhhHHhhceecCCHHHHh
Confidence 6899999999999999999999 9999999999987765433100 00000000 01124688899998889
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC--CCceEEee
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK--GIKFQILS 154 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~--g~~~~v~~ 154 (362)
++||+|+.|+|.. .+++ .+.++++.+.++++++| .+||.+. ....+.+.+....+ +.+| +
T Consensus 82 ~~aDlViEavpE~-----------l~vK--~~lf~~l~~~~~~~aIl-aSnTS~l-~~s~la~~~~~p~R~~g~Hf---f 143 (321)
T PRK07066 82 ADADFIQESAPER-----------EALK--LELHERISRAAKPDAII-ASSTSGL-LPTDFYARATHPERCVVGHP---F 143 (321)
T ss_pred cCCCEEEECCcCC-----------HHHH--HHHHHHHHHhCCCCeEE-EECCCcc-CHHHHHHhcCCcccEEEEec---C
Confidence 9999999999863 3444 67789999999998844 4555422 22334333322211 2222 3
Q ss_pred CCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHH
Q 017997 155 NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMS 234 (362)
Q Consensus 155 ~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (362)
+|.+..| ...|+ .+..| ++++++.+.++++.++ +.++.+. .|...++.|. +..++++|..
T Consensus 144 nP~~~~p---------LVEVv-~g~~T--~~e~~~~~~~f~~~lG-k~pV~v~----kd~pGFi~NR---l~~a~~~EA~ 203 (321)
T PRK07066 144 NPVYLLP---------LVEVL-GGERT--APEAVDAAMGIYRALG-MRPLHVR----KEVPGFIADR---LLEALWREAL 203 (321)
T ss_pred CccccCc---------eEEEe-CCCCC--CHHHHHHHHHHHHHcC-CEeEecC----CCCccHHHHH---HHHHHHHHHH
Confidence 5554433 11354 44444 6899999999999987 3566652 1234578888 5679999999
Q ss_pred HHHHHhCCCHHHHHHHhcCCC
Q 017997 235 ALCEATGANVSQVAFAVGTDS 255 (362)
Q Consensus 235 ~l~~~~g~d~~~v~~~~~~~~ 255 (362)
.+.++..++++++..++...+
T Consensus 204 ~lv~eGvas~edID~a~~~g~ 224 (321)
T PRK07066 204 HLVNEGVATTGEIDDAIRFGA 224 (321)
T ss_pred HHHHhCCCCHHHHHHHHHhCC
Confidence 999998899999999976544
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-16 Score=138.46 Aligned_cols=250 Identities=17% Similarity=0.177 Sum_probs=169.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh---hcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH---VSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a---~~~ 78 (362)
|+|+.||||.||..+..+|.+. ||+|++||+|++.++.+.... .+.++++.+. +..
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~--ghdvV~yD~n~~av~~~~~~g-------------------a~~a~sl~el~~~L~~ 59 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG--GHDVVGYDVNQTAVEELKDEG-------------------ATGAASLDELVAKLSA 59 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC--CCeEEEEcCCHHHHHHHHhcC-------------------CccccCHHHHHHhcCC
Confidence 7999999999999999999999 999999999999999987632 2222333322 456
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
.-+|.++||... .+.++++++++.|.++.+||+-....-..+.+-.+.+++. |.+| +.+--.
T Consensus 60 pr~vWlMvPag~--------------it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~k--gi~f--lD~GTS 121 (300)
T COG1023 60 PRIVWLMVPAGD--------------ITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEK--GIHF--LDVGTS 121 (300)
T ss_pred CcEEEEEccCCC--------------chHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhc--CCeE--EeccCC
Confidence 689999998431 3478999999999999999985442222222233344443 3332 332211
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC-CcE-EeCChhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-DRI-LTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (362)
.+. .+....-.++|||+ +++.+++.++|+.+.++ .-+ +.+..++..++|+++|..-.-.++.+.|-..+
T Consensus 122 GG~----~G~~~G~~lMiGG~-----~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfel 192 (300)
T COG1023 122 GGV----WGAERGYCLMIGGD-----EEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFEL 192 (300)
T ss_pred CCc----hhhhcCceEEecCc-----HHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHH
Confidence 111 11222235789997 78999999999998652 234 45577899999999999999999999999999
Q ss_pred HHH--hCCCHHHHHHHhcCCCCCCCCCc---------cCCCC-CcccChh-HhHHHHHHHHHhCCCchhHHHHHHHHH
Q 017997 237 CEA--TGANVSQVAFAVGTDSRIGPKFL---------NASVG-FGGSCFQ-KDILNLVYICECNGLPEVAEYWKQVIK 301 (362)
Q Consensus 237 ~~~--~g~d~~~v~~~~~~~~~i~~~~~---------~~g~g-~gg~cl~-kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (362)
.++ +++|.++|.+..+..+.|++..+ .|... ++|+--. -.=+.-+..|-+.|+| +|++..++.
T Consensus 193 L~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~~g~v~dSGEGrWTv~~aldlgvp--aPVia~al~ 268 (300)
T COG1023 193 LKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQISGRVSDSGEGRWTVEEALDLGVP--APVIALALM 268 (300)
T ss_pred HHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHhcCeeccCCCceeehHHHHhcCCC--chHHHHHHH
Confidence 998 67899999999998775543211 12111 1111000 0011223455678899 788877663
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-17 Score=164.23 Aligned_cols=211 Identities=18% Similarity=0.204 Sum_probs=141.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-------CCCCCCCChHHHHhhhcCCCEEEecCHH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-------QLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~-------~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (362)
+|||+|||+|.||.+||..|+++ ||+|++||+++++++.+.+. ...+....+ ...++++++++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~--G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~g~i~~~~~~~ 75 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA--GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPL------PPEGRLTFCASLA 75 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchh------hhhhceEeeCCHH
Confidence 47999999999999999999999 99999999999998765421 000000000 0124578899998
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEe
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQIL 153 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~ 153 (362)
+++++||+|++|+|+.. ++ ....+.++.+.++++. |+.+||..+..+ .+.+.+... ...++
T Consensus 76 ea~~~aD~Vieavpe~~-----------~v--k~~l~~~l~~~~~~~~-iI~SsTsgi~~s-~l~~~~~~~----~r~~~ 136 (495)
T PRK07531 76 EAVAGADWIQESVPERL-----------DL--KRRVLAEIDAAARPDA-LIGSSTSGFLPS-DLQEGMTHP----ERLFV 136 (495)
T ss_pred HHhcCCCEEEEcCcCCH-----------HH--HHHHHHHHHhhCCCCc-EEEEcCCCCCHH-HHHhhcCCc----ceEEE
Confidence 88999999999998642 22 2456677888877775 456677655433 444434332 12455
Q ss_pred eCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHH
Q 017997 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 233 (362)
Q Consensus 154 ~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (362)
.+|-. |... ... -.++++..+ +++.+++++++|+.++. .+++... +...++.|.+ ..++++|+
T Consensus 137 ~hP~n--P~~~----~~L-vevv~g~~t--~~e~~~~~~~~~~~lG~-~~v~~~k----~~~gfi~nrl---~~a~~~EA 199 (495)
T PRK07531 137 AHPYN--PVYL----LPL-VELVGGGKT--SPETIRRAKEILREIGM-KPVHIAK----EIDAFVGDRL---LEALWREA 199 (495)
T ss_pred EecCC--Cccc----Cce-EEEcCCCCC--CHHHHHHHHHHHHHcCC-EEEeecC----CCcchhHHHH---HHHHHHHH
Confidence 55522 1111 111 245676544 58899999999999973 4554431 3333444442 44567999
Q ss_pred HHHHHHhCCCHHHHHHHhcCCC
Q 017997 234 SALCEATGANVSQVAFAVGTDS 255 (362)
Q Consensus 234 ~~l~~~~g~d~~~v~~~~~~~~ 255 (362)
..++++.|+|++++.+++...+
T Consensus 200 ~~L~~~g~~s~~~id~~~~~g~ 221 (495)
T PRK07531 200 LWLVKDGIATTEEIDDVIRYSF 221 (495)
T ss_pred HHHHHcCCCCHHHHHHHHhhcc
Confidence 9999999999999999998764
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-16 Score=149.18 Aligned_cols=212 Identities=19% Similarity=0.195 Sum_probs=142.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||..+|..|+++ ||+|++|++ +++++.+++.+..+.++..+.. -....+++.+++...+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~ 71 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA--GRDVTFLVR-PKRAKALRERGLVIRSDHGDAV------VPGPVITDPEELTGPFDL 71 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCceEEEec-HHHHHHHHhCCeEEEeCCCeEE------ecceeecCHHHccCCCCE
Confidence 7999999999999999999999 999999999 8899988875544433221110 012345666665689999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc-cc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF-LA 160 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~-~~ 160 (362)
||+|+|++ ++.++++.+.+.++++++|+.. +...+..+.+.+.+.+.. .-..+.+.+.+ ..
T Consensus 72 vilavk~~---------------~~~~~~~~l~~~~~~~~~ii~~-~nG~~~~~~l~~~~~~~~--v~~g~~~~~~~~~~ 133 (305)
T PRK12921 72 VILAVKAY---------------QLDAAIPDLKPLVGEDTVIIPL-QNGIGQLEQLEPYFGRER--VLGGVVFISAQLNG 133 (305)
T ss_pred EEEEeccc---------------CHHHHHHHHHhhcCCCCEEEEe-eCCCChHHHHHHhCCccc--EEEEEEEEEEEECC
Confidence 99999864 2477888898888888776543 234455566665554321 01123333433 34
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHH------------------
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF------------------ 222 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~------------------ 222 (362)
+|...+. .+.++++|..+.. ..+..+.+.++|...+. ......|+....|.|++.|+.
T Consensus 134 ~g~v~~~--~~~~~~iG~~~~~-~~~~~~~l~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~ 209 (305)
T PRK12921 134 DGVVVQR--ADHRLTFGEIPGQ-RSERTRAVRDALAGARL-EVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSR 209 (305)
T ss_pred CeEEEEc--CCCcEEEcCCCCC-cCHHHHHHHHHHHhCCC-CceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhC
Confidence 4554333 4456778864322 23456677777776542 234567999999999998863
Q ss_pred ---HHHHHHHHHHHHHHHHHhCCCH
Q 017997 223 ---LAQRISSVNAMSALCEATGANV 244 (362)
Q Consensus 223 ---~~~~ia~~nE~~~l~~~~g~d~ 244 (362)
+.+..+.++|+..++++.|+++
T Consensus 210 ~~~~~l~~~~~~E~~~v~~a~G~~~ 234 (305)
T PRK12921 210 PGGRDLARALLRECLAVARAEGAPL 234 (305)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 2456688999999999999763
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.3e-17 Score=160.96 Aligned_cols=201 Identities=18% Similarity=0.216 Sum_probs=143.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc------------CCCCCCCCChHHHHhhhcCCCEEEe
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS------------DQLPIYEPGLDGVVKQCRGKNLFFS 69 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~------------~~~~~~e~~l~~~~~~~~~~~l~~t 69 (362)
.+|+|||+|.||..||.+|+.+ ||+|++||++++.++...+ |.. .+...+. ...+++.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~--~~~~~~~-----~~~~i~~~ 78 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA--GHTVLLYDARAGAAAAARDGIAARLAKLVEKGKL--TAEQADA-----ALARLRPV 78 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHH-----HHhCeEEe
Confidence 4799999999999999999999 9999999999999887421 211 1111111 12468899
Q ss_pred cCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--
Q 017997 70 TDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK-- 146 (362)
Q Consensus 70 ~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~-- 146 (362)
+++++ +++||+||.|||... +++ ..++.++...+++++++ +++||+++. .+...+.....
T Consensus 79 ~~~~~-~~~aDlViEav~E~~-----------~vK--~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~ 141 (507)
T PRK08268 79 EALAD-LADCDLVVEAIVERL-----------DVK--QALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVA 141 (507)
T ss_pred CCHHH-hCCCCEEEEcCcccH-----------HHH--HHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEE
Confidence 99976 789999999998643 233 45567788888899988 689999985 23333322111
Q ss_pred CCceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCC-hhHHHHHHHHHhHHHHH
Q 017997 147 GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN-LWSAELSKLAANAFLAQ 225 (362)
Q Consensus 147 g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ae~~Kl~~N~~~~~ 225 (362)
|.+| ++|....+ . -.|+++..+ ++++++++.++++.++ +.++++.+ ++ ++.|.+.
T Consensus 142 G~hf---f~Pa~v~~---------L-vEvv~g~~T--s~~~~~~~~~l~~~lg-k~pv~v~d~pG------fi~Nrll-- 197 (507)
T PRK08268 142 GLHF---FNPVPLMK---------L-VEVVSGLAT--DPAVADALYALARAWG-KTPVRAKDTPG------FIVNRAA-- 197 (507)
T ss_pred EEee---cCCcccCe---------e-EEEeCCCCC--CHHHHHHHHHHHHHcC-CceEEecCCCC------hHHHHHH--
Confidence 3333 34433321 1 235666444 5899999999999987 46777765 34 5777654
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 017997 226 RISSVNAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 226 ~ia~~nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
.++++|...++++.++|++++.+++..
T Consensus 198 -~~~~~Ea~~l~~~g~~~~~~iD~al~~ 224 (507)
T PRK08268 198 -RPYYTEALRVLEEGVADPATIDAILRE 224 (507)
T ss_pred -HHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 469999999999999999999999854
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.3e-16 Score=142.93 Aligned_cols=201 Identities=14% Similarity=0.129 Sum_probs=130.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|.||.++|..|.++ |+ +|++||+++++++.+.+. +....+++++++ .++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~--g~~~~v~~~d~~~~~~~~~~~~------------------g~~~~~~~~~~~-~~a 59 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK--GLISKVYGYDHNELHLKKALEL------------------GLVDEIVSFEEL-KKC 59 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc--CCCCEEEEEcCCHHHHHHHHHC------------------CCCcccCCHHHH-hcC
Confidence 6999999999999999999998 65 899999999988876542 111123455664 459
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc--
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE-- 157 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe-- 157 (362)
|+||+|||.. .+.+.++++.+ ++++++|+..+++... +.+.+.+.. +.. ++..+|-
T Consensus 60 D~Vilavp~~---------------~~~~~~~~l~~-l~~~~iv~d~gs~k~~----i~~~~~~~~-~~~-~v~~hPmaG 117 (275)
T PRK08507 60 DVIFLAIPVD---------------AIIEILPKLLD-IKENTTIIDLGSTKAK----IIESVPKHI-RKN-FIAAHPMAG 117 (275)
T ss_pred CEEEEeCcHH---------------HHHHHHHHHhc-cCCCCEEEECccchHH----HHHHHHHhc-CCC-EEecCCcCc
Confidence 9999999842 35677788888 8889988875554333 333333321 112 4566784
Q ss_pred --ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 017997 158 --FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (362)
Q Consensus 158 --~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (362)
+.+|..+..+++....+++... ...+++..+.++++|+.++. .+++....+..++++++++.-..+..++++-+.
T Consensus 118 ~e~~Gp~~a~~~l~~g~~~il~~~-~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~hD~~~a~vs~lph~~a~~l~~~~~- 194 (275)
T PRK08507 118 TENSGPKAAIKGLYEGKVVVLCDV-EKSGEKHQERAKEIFSGLGM-RIVYMDAKEHDLHAAYISHLPHIISFALANTVL- 194 (275)
T ss_pred CchhhHHhccHHHhCCCeEEEecC-CCCCHHHHHHHHHHHHHhCC-EEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHHH-
Confidence 3445555544444333333322 22246788999999999872 344445556788999999998755555544441
Q ss_pred HHHHhCCCHHHHHHHhc
Q 017997 236 LCEATGANVSQVAFAVG 252 (362)
Q Consensus 236 l~~~~g~d~~~v~~~~~ 252 (362)
.+.|..++....+
T Consensus 195 ----~~~~~~~~~~~~~ 207 (275)
T PRK08507 195 ----KEEDERNIFDLAG 207 (275)
T ss_pred ----hcCChHHHHhhcc
Confidence 2455555555444
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=158.23 Aligned_cols=210 Identities=18% Similarity=0.220 Sum_probs=143.0
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----CCCCCCC-hHHHHhhhcCCCEEEecCHHhh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----LPIYEPG-LDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~----~~~~e~~-l~~~~~~~~~~~l~~t~d~~~a 75 (362)
+.||+|||+|.||..||.+|+++ ||+|++||++++.++...+.. ....+.+ +...-.+....+++.++++++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a--G~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~- 81 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA--GHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA- 81 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-
Confidence 46899999999999999999999 999999999999987542210 0000001 000000011246888999976
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEE-EeeCCccccHHHHHHHHHhccC--CCceEE
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--GIKFQI 152 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv-~~STv~~gt~~~l~~~l~~~~~--g~~~~v 152 (362)
+++||+||.|||... +++ +.++.++.+.+++++++. ++||+++. .+...+..... |.+|
T Consensus 82 l~~aDlVIEav~E~~-----------~vK--~~vf~~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G~HF-- 143 (503)
T TIGR02279 82 LADAGLVIEAIVENL-----------EVK--KALFAQLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAGLHF-- 143 (503)
T ss_pred hCCCCEEEEcCcCcH-----------HHH--HHHHHHHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEEEec--
Confidence 789999999998642 223 556778888888888773 67777764 23333332211 4443
Q ss_pred eeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHH
Q 017997 153 LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 153 ~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
++|....+ . -.|+++..+ ++++++++.++++.++ +.++++.+... ++.|.+. .++++|
T Consensus 144 -f~Papv~~---------L-vEvv~g~~T--s~e~~~~~~~l~~~lg-k~pv~v~d~pG-----fi~Nrl~---~~~~~E 201 (503)
T TIGR02279 144 -FNPAPVMA---------L-VEVVSGLAT--AAEVAEQLYETALAWG-KQPVHCHSTPG-----FIVNRVA---RPYYAE 201 (503)
T ss_pred -cCccccCc---------e-EEEeCCCCC--CHHHHHHHHHHHHHcC-CeeeEeCCCCC-----cHHHHHH---HHHHHH
Confidence 35443332 1 235676544 5899999999999997 45676665322 3666644 479999
Q ss_pred HHHHHHHhCCCHHHHHHHhcC
Q 017997 233 MSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 233 ~~~l~~~~g~d~~~v~~~~~~ 253 (362)
...+.++.+++++++.+++..
T Consensus 202 A~~l~e~g~a~~~~ID~al~~ 222 (503)
T TIGR02279 202 ALRALEEQVAAPAVLDAALRD 222 (503)
T ss_pred HHHHHHcCCCCHHHHHHHHHh
Confidence 999999999999999999865
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-16 Score=143.99 Aligned_cols=187 Identities=14% Similarity=0.112 Sum_probs=128.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCE-EEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNL-FFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l-~~t~d~~~a~~~aD 80 (362)
|||+|||+|.||.++|..|.++ |++|++||++++..+.+.+.. .+ ..+++.+ +++++|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g------------------~~~~~~~~~~-~~~~aD 59 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERG------------------LVDEASTDLS-LLKDCD 59 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCC------------------CcccccCCHh-HhcCCC
Confidence 7999999999999999999998 999999999999888776421 11 2334443 588999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCC----
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP---- 156 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P---- 156 (362)
+||+|+|.+ .+.+.++++.++++++++|++.+++.+...+.+.+... . ++..+|
T Consensus 60 lVilavp~~---------------~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~~~~------~-~v~~HPm~G~ 117 (279)
T PRK07417 60 LVILALPIG---------------LLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEKLHP------R-FVGSHPMAGT 117 (279)
T ss_pred EEEEcCCHH---------------HHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHHhhC------C-ceeeCCcCCC
Confidence 999998842 34667888988888899998888776655444332211 1 344455
Q ss_pred cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHH
Q 017997 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 233 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (362)
+..+...+..+++....+++- +....+++..+.++++++.++. .+++....+..+.++++.|....+..++++..
T Consensus 118 ~~~g~~~a~~~lf~g~~~~l~-p~~~~~~~~~~~v~~l~~~lG~-~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~ 192 (279)
T PRK07417 118 AESGVEAGQRGLFKNRPWVLT-PTENTDLNALAIVEELAVSLGS-KIYTADPEEHDRAVALISHLPVMVSAALIQTC 192 (279)
T ss_pred CcchHHHhhHHHhCCCcEEEc-cCCCCCHHHHHHHHHHHHHcCC-EEEEcCHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 333333444444433333332 2222357889999999999873 33445556788999999998766666665554
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-17 Score=140.46 Aligned_cols=151 Identities=25% Similarity=0.351 Sum_probs=110.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
||+|+|+|.||+++|..|+++ ||+|++|.++++.++.+++.+ .+.+.++.. ...++.+++|++++++++|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~--g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~------l~~~i~~t~dl~~a~~~ad~ 72 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN--GHEVTLWGRDEEQIEEINETRQNPKYLPGIK------LPENIKATTDLEEALEDADI 72 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC--TEEEEEETSCHHHHHHHHHHTSETTTSTTSB------EETTEEEESSHHHHHTT-SE
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhCCCCCCCCCcc------cCcccccccCHHHHhCcccE
Confidence 799999999999999999999 999999999999999998744 333444421 23468999999999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-CccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
|+++||+. .+++.++++.++++++++++..+. +.+++...+.+.+++..+...+.++++|.+..
T Consensus 73 IiiavPs~---------------~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~ 137 (157)
T PF01210_consen 73 IIIAVPSQ---------------AHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAE 137 (157)
T ss_dssp EEE-S-GG---------------GHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HH
T ss_pred EEecccHH---------------HHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHH
Confidence 99999853 368899999999999998887665 55666666666666654323378899998887
Q ss_pred cCccccccCCCCeEEEecCC
Q 017997 161 EGTAIQDLFNPDRVLIGGRE 180 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~ 180 (362)
+-.. ..|..+++++.+
T Consensus 138 Ei~~----~~pt~~~~as~~ 153 (157)
T PF01210_consen 138 EIAE----GKPTAVVIASKN 153 (157)
T ss_dssp HHHT----T--EEEEEEESS
T ss_pred HHHc----CCCeEEEEEecc
Confidence 6432 466677888774
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-16 Score=144.30 Aligned_cols=204 Identities=19% Similarity=0.214 Sum_probs=135.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHhhhcCCCEEEecC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----------LPIYEPGLDGVVKQCRGKNLFFSTD 71 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~----------~~~~e~~l~~~~~~~~~~~l~~t~d 71 (362)
+||+|||+|.||.++|..|+++ |++|++||+++++++.+.+.. -.+.+..... ...+++++++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~-----~~~~i~~~~~ 77 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAA-----ALARISTATD 77 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH-----HHhCeEeeCC
Confidence 5899999999999999999999 999999999999887743210 0010101111 1245788888
Q ss_pred HHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEE-EeeCCccccHHHHHHHHHhccC--CC
Q 017997 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--GI 148 (362)
Q Consensus 72 ~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv-~~STv~~gt~~~l~~~l~~~~~--g~ 148 (362)
+++ +++||+||+|+|+.. ......++++.+.++++++++ ++||+++. .+.+.+..... |.
T Consensus 78 ~~~-~~~aD~Vieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~ 140 (292)
T PRK07530 78 LED-LADCDLVIEAATEDE-------------TVKRKIFAQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGI 140 (292)
T ss_pred HHH-hcCCCEEEEcCcCCH-------------HHHHHHHHHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEe
Confidence 865 899999999998642 123566788999999998875 67777653 34433322111 22
Q ss_pred ceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHH
Q 017997 149 KFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRIS 228 (362)
Q Consensus 149 ~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia 228 (362)
+| +.|....++. .++.| ..+ +++.++.+.++++.++. .+++..+.. .+++++. ..+
T Consensus 141 h~---~~p~~~~~~v---------ei~~g-~~t--~~~~~~~~~~~~~~~gk-~~v~~~d~p----g~i~nRl----~~~ 196 (292)
T PRK07530 141 HF---MNPVPVMKLV---------ELIRG-IAT--DEATFEAAKEFVTKLGK-TITVAEDFP----AFIVNRI----LLP 196 (292)
T ss_pred ec---cCCcccCceE---------EEeCC-CCC--CHHHHHHHHHHHHHcCC-eEEEecCcC----ChHHHHH----HHH
Confidence 21 2343333221 24333 322 58899999999999873 566555533 4444444 357
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHhcC
Q 017997 229 SVNAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 229 ~~nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
++||...+.++.-.+++++..++..
T Consensus 197 ~~~ea~~~~~~g~~~~~~iD~~~~~ 221 (292)
T PRK07530 197 MINEAIYTLYEGVGSVEAIDTAMKL 221 (292)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 8999998888855689999998743
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.2e-16 Score=143.82 Aligned_cols=213 Identities=15% Similarity=0.114 Sum_probs=140.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCC---CCCCC--ChHHHH-hhhcCCCEEEecCHHh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQL---PIYEP--GLDGVV-KQCRGKNLFFSTDVEK 74 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~---~~~e~--~l~~~~-~~~~~~~l~~t~d~~~ 74 (362)
++||+|||+|.||.++|..|+.+ |++|++||++++.++.+++... +..++ .+..-- .+....++++++|+++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ 80 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE 80 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence 37999999999999999999999 9999999999998887654210 00000 000000 0001256889999998
Q ss_pred hhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccCCCceEEe
Q 017997 75 HVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSKGIKFQIL 153 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~g~~~~v~ 153 (362)
++++||+||+|+|++. ....+.++++.+.++++++| .++||+++.. +.+.+... .. ++.
T Consensus 81 a~~~aDlVieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~---~~~~~~~~---~r-~vg 140 (287)
T PRK08293 81 AVKDADLVIEAVPEDP-------------EIKGDFYEELAKVAPEKTIFATNSSTLLPSQ---FAEATGRP---EK-FLA 140 (287)
T ss_pred HhcCCCEEEEeccCCH-------------HHHHHHHHHHHhhCCCCCEEEECcccCCHHH---HHhhcCCc---cc-EEE
Confidence 8999999999998642 23477788999999988888 5677776543 22222211 11 233
Q ss_pred eCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeC-ChhHHHHHHHHHhHHHHHHHHHHHH
Q 017997 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT-NLWSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 154 ~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
.+| ..|... .....+ +.+..+ ++++++.+.++++.++ +.++.+. + .-.++.|.+ ..+++||
T Consensus 141 ~Hf--~~p~~~----~~lvev-v~~~~t--~~~~~~~~~~~~~~~G-k~pv~v~~d-----~pgfi~nRi---~~~~~~e 202 (287)
T PRK08293 141 LHF--ANEIWK----NNTAEI-MGHPGT--DPEVFDTVVAFAKAIG-MVPIVLKKE-----QPGYILNSL---LVPFLSA 202 (287)
T ss_pred EcC--CCCCCc----CCeEEE-eCCCCC--CHHHHHHHHHHHHHcC-CeEEEecCC-----CCCHhHHHH---HHHHHHH
Confidence 333 111110 111123 333323 6899999999999987 3455553 3 224566763 5589999
Q ss_pred HHHHHHHhCCCHHHHHHHhcC
Q 017997 233 MSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 233 ~~~l~~~~g~d~~~v~~~~~~ 253 (362)
...+.++..++++++..++..
T Consensus 203 a~~l~~~g~a~~~~iD~a~~~ 223 (287)
T PRK08293 203 ALALWAKGVADPETIDKTWMI 223 (287)
T ss_pred HHHHHHcCCCCHHHHHHHHHh
Confidence 999999988999999998754
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-15 Score=144.47 Aligned_cols=211 Identities=15% Similarity=0.152 Sum_probs=135.9
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCC---CC-CCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQL---PI-YEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~---~~-~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
|+||+|||+|.||.++|..|+++ |++|++||+++++++.+++... .. .+.+... ...+++++++++++++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK--GLQVVLIDVMEGALERARGVIERALGVYAPLGIAS----AGMGRIRMEAGLAAAV 77 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHH----HHhhceEEeCCHHHHh
Confidence 46899999999999999999998 9999999999999888765210 00 0000000 0124577888888888
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCC
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP 156 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (362)
++||+||+|||.+. .....++..+.+.++++++|+ ++|..+. ...+.+.+.... . ++..+|
T Consensus 78 ~~aDlVi~av~~~~-------------~~~~~v~~~l~~~~~~~~ii~-s~tsg~~-~~~l~~~~~~~~---~-~ig~h~ 138 (311)
T PRK06130 78 SGADLVIEAVPEKL-------------ELKRDVFARLDGLCDPDTIFA-TNTSGLP-ITAIAQAVTRPE---R-FVGTHF 138 (311)
T ss_pred ccCCEEEEeccCcH-------------HHHHHHHHHHHHhCCCCcEEE-ECCCCCC-HHHHHhhcCCcc---c-EEEEcc
Confidence 99999999998532 123567777888777776653 3443322 345544443211 1 233333
Q ss_pred cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeC-ChhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 017997 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT-NLWSAELSKLAANAFLAQRISSVNAMSA 235 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (362)
. .|... ... ..++.+..+ +++..+.+.++++.++. .++... +.... +++|.+ .++++|...
T Consensus 139 ~--~p~~~----~~l-~~i~~g~~t--~~~~~~~v~~l~~~~G~-~~v~~~~d~~G~----i~nr~~----~~~~~Ea~~ 200 (311)
T PRK06130 139 F--TPADV----IPL-VEVVRGDKT--SPQTVATTMALLRSIGK-RPVLVKKDIPGF----IANRIQ----HALAREAIS 200 (311)
T ss_pred C--CCCcc----Cce-EEEeCCCCC--CHHHHHHHHHHHHHcCC-EEEEEcCCCCCc----HHHHHH----HHHHHHHHH
Confidence 1 11111 111 123444322 58899999999999873 445553 32211 455543 488999999
Q ss_pred HHHHhCCCHHHHHHHhcCC
Q 017997 236 LCEATGANVSQVAFAVGTD 254 (362)
Q Consensus 236 l~~~~g~d~~~v~~~~~~~ 254 (362)
++++.++|++++.+++...
T Consensus 201 l~~~g~~~~~~id~~~~~~ 219 (311)
T PRK06130 201 LLEKGVASAEDIDEVVKWS 219 (311)
T ss_pred HHHcCCCCHHHHHHHHHhc
Confidence 9999999999999999643
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-15 Score=139.57 Aligned_cols=204 Identities=16% Similarity=0.188 Sum_probs=136.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC----------CCCCCCCChHHHHhhhcCCCEEEecC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD----------QLPIYEPGLDGVVKQCRGKNLFFSTD 71 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~----------~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (362)
.||+|||+|.||..+|..|+.+ ||+|++||++++.++...+. .-.+.+...+. ...+++.++|
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~-----~~~~l~~~~~ 78 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDA-----ALARLRFTTD 78 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHH-----HHhCeEeeCC
Confidence 4899999999999999999999 99999999999998763211 00011111111 2357889999
Q ss_pred HHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhc-CCCCEEEEee-CCccccHHHHHHHHHhccC--C
Q 017997 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVS-KSDKIVVEKS-TVPVKTAEAIEKILTHNSK--G 147 (362)
Q Consensus 72 ~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l-~~~~iVv~~S-Tv~~gt~~~l~~~l~~~~~--g 147 (362)
++ ++++||+||.|+|.. .+++ ...+..+.+.+ +++++++..| ++++.... ........ |
T Consensus 79 ~~-~~~~~d~ViEav~E~-----------~~~K--~~l~~~l~~~~~~~~~il~snTS~~~~~~la---~~~~~~~r~~g 141 (286)
T PRK07819 79 LG-DFADRQLVIEAVVED-----------EAVK--TEIFAELDKVVTDPDAVLASNTSSIPIMKLA---AATKRPGRVLG 141 (286)
T ss_pred HH-HhCCCCEEEEecccC-----------HHHH--HHHHHHHHHhhCCCCcEEEECCCCCCHHHHH---hhcCCCccEEE
Confidence 95 489999999999853 2333 56778888888 7888885533 45544322 21221111 2
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHh-ccCCCCcEEeCChhHHHHHHHHHhHHHHHH
Q 017997 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYA-HWVPEDRILTTNLWSAELSKLAANAFLAQR 226 (362)
Q Consensus 148 ~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ 226 (362)
.+| ++|.+..+.. .|+.|.. + ++++++++.+++. .++ +.++.+.+ ...++.|. +.
T Consensus 142 ~hf---~~P~~~~~lv---------Elv~~~~-T--~~~~~~~~~~~~~~~lg-k~pv~v~d-----~pGfi~nR---i~ 197 (286)
T PRK07819 142 LHF---FNPVPVLPLV---------ELVPTLV-T--SEATVARAEEFASDVLG-KQVVRAQD-----RSGFVVNA---LL 197 (286)
T ss_pred Eec---CCCcccCceE---------EEeCCCC-C--CHHHHHHHHHHHHHhCC-CCceEecC-----CCChHHHH---HH
Confidence 232 3554443322 3655543 3 5899999999988 476 35666554 23456676 46
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 017997 227 ISSVNAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 227 ia~~nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
.+++||...+.++...+++++..++..
T Consensus 198 ~~~~~Ea~~ll~eGv~~~~dID~~~~~ 224 (286)
T PRK07819 198 VPYLLSAIRMVESGFATAEDIDKAMVL 224 (286)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 799999999998877889999998854
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=139.78 Aligned_cols=211 Identities=21% Similarity=0.271 Sum_probs=146.7
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----CCCCCCC-hHHHHhhhcCCCEEEecCHHhh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----LPIYEPG-LDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~----~~~~e~~-l~~~~~~~~~~~l~~t~d~~~a 75 (362)
++||+|||+|.||..+|..+|.. |++|+++|++++.+++..+.. ....+.+ +.+.-.+...++++.++++. +
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~--G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~ 79 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA--GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-A 79 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc--CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-H
Confidence 47999999999999999999997 999999999988766443210 0000110 11100011235688888887 4
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--CCceEE
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GIKFQI 152 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g~~~~v 152 (362)
+++||+||.+|+. +.+++ +++++++.+++++++|+ .++|++++.... .......+ |.||
T Consensus 80 l~~~DlVIEAv~E-----------~levK--~~vf~~l~~~~~~~aIlASNTSsl~it~ia---~~~~rper~iG~HF-- 141 (307)
T COG1250 80 LKDADLVIEAVVE-----------DLELK--KQVFAELEALAKPDAILASNTSSLSITELA---EALKRPERFIGLHF-- 141 (307)
T ss_pred hccCCEEEEeccc-----------cHHHH--HHHHHHHHhhcCCCcEEeeccCCCCHHHHH---HHhCCchhEEEEec--
Confidence 9999999999985 23444 78999999999999998 888888876432 22211111 3343
Q ss_pred eeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHH
Q 017997 153 LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 153 ~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
++|....+ ...||-| ..| ++++++++.++..+++ +.++...| .-.++.|. +..++++|
T Consensus 142 -fNP~~~m~---------LVEvI~g-~~T--~~e~~~~~~~~~~~ig-K~~vv~~D-----~pGFi~NR---il~~~~~e 199 (307)
T COG1250 142 -FNPVPLMP---------LVEVIRG-EKT--SDETVERVVEFAKKIG-KTPVVVKD-----VPGFIVNR---LLAALLNE 199 (307)
T ss_pred -cCCCCcce---------eEEEecC-CCC--CHHHHHHHHHHHHHcC-CCCEeecC-----CCceehHh---HHHHHHHH
Confidence 46655533 2235544 434 5899999999999987 44544444 23467888 45699999
Q ss_pred HHHHHHHhCCCHHHHHHHhcCC
Q 017997 233 MSALCEATGANVSQVAFAVGTD 254 (362)
Q Consensus 233 ~~~l~~~~g~d~~~v~~~~~~~ 254 (362)
...+.++..+++++|..++...
T Consensus 200 A~~l~~eGva~~e~ID~~~~~~ 221 (307)
T COG1250 200 AIRLLEEGVATPEEIDAAMRQG 221 (307)
T ss_pred HHHHHHhCCCCHHHHHHHHHhc
Confidence 9999999889999999999753
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-15 Score=139.80 Aligned_cols=209 Identities=15% Similarity=0.121 Sum_probs=134.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh---------hcCCCEEEecCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ---------CRGKNLFFSTDV 72 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~---------~~~~~l~~t~d~ 72 (362)
.||+|||+|.||.++|..|+++ |++|++||++++.++...+....- ..+++.++.+ ....++.++++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~-~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESG-PYGLRNLVEKGKMSEDEAKAIMARIRTSTSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhh-hhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH
Confidence 5899999999999999999999 999999999999987543210000 0001111000 012357778887
Q ss_pred HhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC--CCce
Q 017997 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK--GIKF 150 (362)
Q Consensus 73 ~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~--g~~~ 150 (362)
+ ++++||+||+|+|++. ....++++++.+.++++++++ ++|. .-+...+...+....+ |.+|
T Consensus 81 ~-~~~~aDlVieav~e~~-------------~~k~~~~~~l~~~~~~~~il~-S~ts-g~~~~~la~~~~~~~r~ig~hf 144 (291)
T PRK06035 81 E-SLSDADFIVEAVPEKL-------------DLKRKVFAELERNVSPETIIA-SNTS-GIMIAEIATALERKDRFIGMHW 144 (291)
T ss_pred H-HhCCCCEEEEcCcCcH-------------HHHHHHHHHHHhhCCCCeEEE-EcCC-CCCHHHHHhhcCCcccEEEEec
Confidence 4 5899999999998642 123677888888888888764 2222 2233445444432211 2221
Q ss_pred EEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHH
Q 017997 151 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSV 230 (362)
Q Consensus 151 ~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (362)
+.|....++. .++ .+..+ ++++++++.++++.++ +.++++.+....-..|+.. .++
T Consensus 145 ---~~P~~~~~~v---------Ev~-~g~~T--~~e~~~~~~~~~~~lg-k~~v~v~d~pgfv~nRl~~--------~~~ 200 (291)
T PRK06035 145 ---FNPAPVMKLI---------EVV-RAALT--SEETFNTTVELSKKIG-KIPIEVADVPGFFTTRFIE--------GWL 200 (291)
T ss_pred ---CCCcccCccE---------EEe-CCCCC--CHHHHHHHHHHHHHcC-CeEEEeCCCCCeeHHHHHH--------HHH
Confidence 3443333321 243 33333 5899999999999987 3566677766655555444 467
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcC
Q 017997 231 NAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 231 nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
||...+.++--++++++..++..
T Consensus 201 ~ea~~~~~~g~a~~~~iD~~~~~ 223 (291)
T PRK06035 201 LEAIRSFEIGIATIKDIDEMCKL 223 (291)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhh
Confidence 89999988755789999998854
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-15 Score=138.33 Aligned_cols=203 Identities=17% Similarity=0.205 Sum_probs=135.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH-----------cCCCCCCCCChHHHHhhhcCCCEEEe
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN-----------SDQLPIYEPGLDGVVKQCRGKNLFFS 69 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~-----------~~~~~~~e~~l~~~~~~~~~~~l~~t 69 (362)
|+||+|||+|+||.++|..|+++ |++|++||+++++++... +.. .+....... ...+++++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g-~~~~~~~~~-----~~~~l~~~ 74 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKG-KMTEADKEA-----ALARITGT 74 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHH-----HHhCeEEe
Confidence 46899999999999999999999 999999999999885322 110 000000111 11368888
Q ss_pred cCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccCCC
Q 017997 70 TDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSKGI 148 (362)
Q Consensus 70 ~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~g~ 148 (362)
+|+++ +++||+||+|+|... ..-.++++.+.++++++++| .++|+++.. .+.+.+....+
T Consensus 75 ~~~~~-~~~aDlVi~av~e~~-------------~~k~~~~~~l~~~~~~~~il~s~ts~~~~~---~la~~~~~~~r-- 135 (282)
T PRK05808 75 TDLDD-LKDADLVIEAATENM-------------DLKKKIFAQLDEIAKPEAILATNTSSLSIT---ELAAATKRPDK-- 135 (282)
T ss_pred CCHHH-hccCCeeeecccccH-------------HHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHHhhCCCcc--
Confidence 89865 899999999997422 22357888999999999887 333333332 44444432211
Q ss_pred ceEEee---CCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHH
Q 017997 149 KFQILS---NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQ 225 (362)
Q Consensus 149 ~~~v~~---~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~ 225 (362)
++.. .|....++. .++-| ..+ +++..+.+.++++.++. .++.+.| ...++.|. +
T Consensus 136 --~ig~h~~~P~~~~~~v---------ev~~g-~~t--~~e~~~~~~~l~~~lGk-~pv~~~d-----~~g~i~~R---i 192 (282)
T PRK05808 136 --VIGMHFFNPVPVMKLV---------EIIRG-LAT--SDATHEAVEALAKKIGK-TPVEVKN-----APGFVVNR---I 192 (282)
T ss_pred --eEEeeccCCcccCccE---------EEeCC-CCC--CHHHHHHHHHHHHHcCC-eeEEecC-----ccChHHHH---H
Confidence 2232 333333221 24333 323 58999999999999873 5555543 33456666 4
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 017997 226 RISSVNAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 226 ~ia~~nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
..+++||...+.++.-.+++++..++..
T Consensus 193 ~~~~~~ea~~~~~~gv~~~~diD~~~~~ 220 (282)
T PRK05808 193 LIPMINEAIFVLAEGVATAEDIDEGMKL 220 (282)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 5699999999998877889999998853
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.7e-15 Score=138.34 Aligned_cols=205 Identities=15% Similarity=0.201 Sum_probs=133.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHh---------hhcCCCEEEecCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK---------QCRGKNLFFSTDV 72 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~---------~~~~~~l~~t~d~ 72 (362)
.||+|||+|.||.++|..|+.+ |++|++||+++++++...+... ..++.+.+ ....+++.++++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 78 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSIS----SSLARLVKKGKMSQEEADATLGRIRCTTNL 78 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCCHHHHHHHHhceEeeCCH
Confidence 5899999999999999999999 9999999999988764322100 00000000 0012456777777
Q ss_pred HhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEE-EeeCCccccHHHHHHHHHhccC--CCc
Q 017997 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--GIK 149 (362)
Q Consensus 73 ~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv-~~STv~~gt~~~l~~~l~~~~~--g~~ 149 (362)
+ ++++||+||+|||... ++ ...+++++.+.++++++|+ ++|++++... .+.+..... +.+
T Consensus 79 ~-~~~~aD~Vieav~e~~-----------~~--k~~v~~~l~~~~~~~~il~s~tS~i~~~~l---~~~~~~~~r~~g~h 141 (295)
T PLN02545 79 E-ELRDADFIIEAIVESE-----------DL--KKKLFSELDRICKPSAILASNTSSISITRL---ASATQRPQQVIGMH 141 (295)
T ss_pred H-HhCCCCEEEEcCccCH-----------HH--HHHHHHHHHhhCCCCcEEEECCCCCCHHHH---HhhcCCCcceEEEe
Confidence 5 5899999999998532 22 3566788888899998875 7888866543 333322111 111
Q ss_pred eEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHH
Q 017997 150 FQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISS 229 (362)
Q Consensus 150 ~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~ 229 (362)
. ++|....+ .. .++.+..+ +++..++++++++.++. .++++.+.. .++.|. +..++
T Consensus 142 --~-~~pp~~~~---------lv-eiv~g~~t--~~e~~~~~~~ll~~lG~-~~~~~~d~~-----g~i~nr---i~~~~ 197 (295)
T PLN02545 142 --F-MNPPPIMK---------LV-EIIRGADT--SDEVFDATKALAERFGK-TVVCSQDYP-----GFIVNR---ILMPM 197 (295)
T ss_pred --c-cCCcccCc---------eE-EEeCCCCC--CHHHHHHHHHHHHHcCC-eeEEecCcc-----cHHHHH---HHHHH
Confidence 1 23332211 11 23444333 58899999999999873 455554432 245555 34578
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcC
Q 017997 230 VNAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 230 ~nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
+||..++.++...+++++..++..
T Consensus 198 ~~ea~~~~~~gv~~~~~iD~~~~~ 221 (295)
T PLN02545 198 INEAFYALYTGVASKEDIDTGMKL 221 (295)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHh
Confidence 999999999977899999988754
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.1e-14 Score=137.35 Aligned_cols=202 Identities=17% Similarity=0.216 Sum_probs=137.7
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+||| +|.||.++|..|.+. |++|++||+++++.+.+... .++.++++..+++.++|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~--G~~V~v~~r~~~~~~~~a~~------------------~gv~~~~~~~e~~~~aD 60 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK--GFEVIVTGRDPKKGKEVAKE------------------LGVEYANDNIDAAKDAD 60 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC--CCEEEEEECChHHHHHHHHH------------------cCCeeccCHHHHhccCC
Confidence 7999997 899999999999998 89999999998886554331 12345667777789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
+||+|+|.. .+.++++++.+.++++++|++.+++.+...+.+.+.++. +.. ++..+|-+.
T Consensus 61 vVIlavp~~---------------~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~---~~~-~V~~HPmaG- 120 (437)
T PRK08655 61 IVIISVPIN---------------VTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPE---GVE-ILPTHPMFG- 120 (437)
T ss_pred EEEEecCHH---------------HHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCC---CCE-EEEcCCCCC-
Confidence 999998842 356788899999999999998887766666666554432 222 455677543
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (362)
|... . +....+++. +....+++..+.++++|+.++ .++..+++. +.-+++.+......+.+...+.. ++++
T Consensus 121 p~~~--~-~~g~~~il~-p~~~~~~~~~~~v~~ll~~~G--~~v~~~~~e--~HD~~~a~vs~lph~~a~al~~~-l~~~ 191 (437)
T PRK08655 121 PRTP--S-LKGQVVILT-PTEKRSNPWFDKVKNFLEKEG--ARVIVTSPE--EHDRIMSVVQGLTHFAYISIAST-LKRL 191 (437)
T ss_pred CCCc--c-cCCCEEEEe-cCCCCCHHHHHHHHHHHHHcC--CEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHc
Confidence 3322 1 222233332 222224678899999999886 456666654 55666666666566655555443 4667
Q ss_pred CCCHHHHHHHhc
Q 017997 241 GANVSQVAFAVG 252 (362)
Q Consensus 241 g~d~~~v~~~~~ 252 (362)
|.|..+.....+
T Consensus 192 g~~~~~~~~~a~ 203 (437)
T PRK08655 192 GVDIKESRKFAS 203 (437)
T ss_pred CCCHHHHHhhcC
Confidence 888776554443
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-14 Score=134.84 Aligned_cols=209 Identities=21% Similarity=0.261 Sum_probs=139.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||+.+|..|+++ ||+|+++++++++++.+++.+..+ +.+ + . ...+..+++..+ ++++|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~g~~~-~~~-~--~----~~~~~~~~~~~~-~~~~d~ 69 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNENGLRL-EDG-E--I----TVPVLAADDPAE-LGPQDL 69 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHHcCCcc-cCC-c--e----eecccCCCChhH-cCCCCE
Confidence 7999999999999999999998 999999999999999888754433 100 0 0 011234556665 489999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCC-cccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP-EFLA 160 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P-e~~~ 160 (362)
||+|+|++ .+.++++.+.+.+.++++|+... ...+..+.+.+.+.+.. .-..+.+.+ .+..
T Consensus 70 vila~k~~---------------~~~~~~~~l~~~l~~~~~iv~~~-nG~~~~~~l~~~~~~~~--i~~~~~~~~~~~~~ 131 (304)
T PRK06522 70 VILAVKAY---------------QLPAALPSLAPLLGPDTPVLFLQ-NGVGHLEELAAYIGPER--VLGGVVTHAAELEG 131 (304)
T ss_pred EEEecccc---------------cHHHHHHHHhhhcCCCCEEEEec-CCCCcHHHHHHhcCccc--EEEEEEEEeeEecC
Confidence 99999853 24778889999888877665432 34455566655543321 001122222 2334
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhH-------------------
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA------------------- 221 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~------------------- 221 (362)
|+...+. . ..++.+|..+.. .+..+.+.++|+..+. ......|+...+|.|++.|+
T Consensus 132 p~~v~~~-~-~g~~~ig~~~~~--~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~ 206 (304)
T PRK06522 132 PGVVRHT-G-GGRLKIGEPDGE--SAAAEALADLLNAAGL-DVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLAD 206 (304)
T ss_pred CCEEEEc-C-CCCEEEeCCCCC--cHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcC
Confidence 5544322 2 245667865431 2346678888887652 22345789999999999885
Q ss_pred --HHHHHHHHHHHHHHHHHHhCCCH
Q 017997 222 --FLAQRISSVNAMSALCEATGANV 244 (362)
Q Consensus 222 --~~~~~ia~~nE~~~l~~~~g~d~ 244 (362)
.+.+..+.+.|+..++++.|+++
T Consensus 207 ~~~~~l~~~~~~E~~~v~~a~G~~~ 231 (304)
T PRK06522 207 PDYRALIRALMEEVAAVAEAEGVHL 231 (304)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 23456678999999999998753
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-14 Score=148.95 Aligned_cols=204 Identities=17% Similarity=0.219 Sum_probs=143.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHhhhcCCCEEEec
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----------LPIYEPGLDGVVKQCRGKNLFFST 70 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (362)
+.||+|||+|.||..+|..++.+ ||+|+++|++++.++...+.. -.+.+...+. ..+++++++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~-----~~~~i~~~~ 385 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAG-----VLSSIRPTL 385 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHH-----HHhCeEEeC
Confidence 35899999999999999999999 999999999998876432110 0111111111 235799999
Q ss_pred CHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--C
Q 017997 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--G 147 (362)
Q Consensus 71 d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g 147 (362)
|+++ +++||+||.|+|.. .+++ +++++++.+++++++++ .++|++++... ...+..... |
T Consensus 386 ~~~~-~~~aDlViEav~E~-----------l~~K--~~vf~~l~~~~~~~~ilasNTSsl~i~~l---a~~~~~p~r~~g 448 (715)
T PRK11730 386 DYAG-FERVDVVVEAVVEN-----------PKVK--AAVLAEVEQKVREDTILASNTSTISISLL---AKALKRPENFCG 448 (715)
T ss_pred CHHH-hcCCCEEEecccCc-----------HHHH--HHHHHHHHhhCCCCcEEEEcCCCCCHHHH---HhhcCCCccEEE
Confidence 9965 89999999999852 3444 88999999999999988 66777876543 222222111 3
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHH
Q 017997 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRI 227 (362)
Q Consensus 148 ~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~i 227 (362)
.+| ++|....+ ...||.|.. + ++++++.+..++..++ +.++.+.| ...++.|.+ ..
T Consensus 449 ~Hf---f~P~~~~~---------lVEvv~g~~-T--~~~~~~~~~~~~~~lg-k~pv~v~d-----~pGfv~nRi---~~ 504 (715)
T PRK11730 449 MHF---FNPVHRMP---------LVEVIRGEK-T--SDETIATVVAYASKMG-KTPIVVND-----CPGFFVNRV---LF 504 (715)
T ss_pred Eec---CCcccccc---------eEEeeCCCC-C--CHHHHHHHHHHHHHhC-CceEEecC-----cCchhHHHH---HH
Confidence 333 45544432 123555533 3 5899999999999987 46776643 446788884 56
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcC
Q 017997 228 SSVNAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 228 a~~nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
+++||...+.++. +++++|..++..
T Consensus 505 ~~~~ea~~lv~~G-a~~e~ID~a~~~ 529 (715)
T PRK11730 505 PYFAGFSQLLRDG-ADFRQIDKVMEK 529 (715)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHh
Confidence 8899998888865 999999988753
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-15 Score=130.30 Aligned_cols=171 Identities=20% Similarity=0.306 Sum_probs=103.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCC----C-CCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLP----I-YEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~----~-~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
||+|||+|.||..+|..++.+ |++|++||++++.++...+.... . ....+.+-.......++++++|++++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~- 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV- 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-
Confidence 799999999999999999999 99999999999887654431100 0 000011000011235799999999855
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--CCceEEee
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GIKFQILS 154 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g~~~~v~~ 154 (362)
+||+||.|+|.. +..-++.++++.+.+++++++ .++|++++.. +...+....+ |.+| +
T Consensus 78 ~adlViEai~E~-------------l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~---la~~~~~p~R~ig~Hf---~ 138 (180)
T PF02737_consen 78 DADLVIEAIPED-------------LELKQELFAELDEICPPDTILASNTSSLSISE---LAAALSRPERFIGMHF---F 138 (180)
T ss_dssp TESEEEE-S-SS-------------HHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH---HHTTSSTGGGEEEEEE----
T ss_pred hhheehhhcccc-------------HHHHHHHHHHHHHHhCCCceEEecCCCCCHHH---HHhccCcCceEEEEec---c
Confidence 999999999852 233488999999999999988 6666676653 2222211111 3332 3
Q ss_pred CCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCC
Q 017997 155 NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN 208 (362)
Q Consensus 155 ~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 208 (362)
+|.+..|- ..|+.| ..+ ++++++.+..+++.++ +.++.+.|
T Consensus 139 ~P~~~~~l---------VEvv~~-~~T--~~~~~~~~~~~~~~~g-k~pv~v~D 179 (180)
T PF02737_consen 139 NPPHLMPL---------VEVVPG-PKT--SPETVDRVRALLRSLG-KTPVVVKD 179 (180)
T ss_dssp SSTTT--E---------EEEEE--TTS---HHHHHHHHHHHHHTT--EEEEEES
T ss_pred cccccCce---------EEEeCC-CCC--CHHHHHHHHHHHHHCC-CEEEEecC
Confidence 56544331 136555 434 6899999999999986 45665544
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-14 Score=146.73 Aligned_cols=204 Identities=16% Similarity=0.219 Sum_probs=143.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHhhhcCCCEEEec
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----------LPIYEPGLDGVVKQCRGKNLFFST 70 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (362)
+.+|+|||+|.||..+|..++.+ |++|+++|++++.+++..+.. -.+.+...+. ...+++.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~i~~~~ 385 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAG-----VLNGITPTL 385 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHH-----HHhCeEEeC
Confidence 36899999999999999999999 999999999998877533210 0011111111 135789999
Q ss_pred CHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--C
Q 017997 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--G 147 (362)
Q Consensus 71 d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g 147 (362)
|++. +++||+||.||+.. .+++ +++++++.+++++++|+ .++|++++... ...+..... |
T Consensus 386 ~~~~-~~~aDlViEav~E~-----------l~~K--~~vf~~l~~~~~~~~ilasnTS~l~i~~i---a~~~~~p~r~ig 448 (714)
T TIGR02437 386 SYAG-FDNVDIVVEAVVEN-----------PKVK--AAVLAEVEQHVREDAILASNTSTISISLL---AKALKRPENFCG 448 (714)
T ss_pred CHHH-hcCCCEEEEcCccc-----------HHHH--HHHHHHHHhhCCCCcEEEECCCCCCHHHH---HhhcCCcccEEE
Confidence 9864 89999999999853 3344 88999999999999988 66777776543 222222111 3
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHH
Q 017997 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRI 227 (362)
Q Consensus 148 ~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~i 227 (362)
.+| ++|....+ ...||-| ..| ++++++.+..++..++ +.++.+.| ...++.|.+ ..
T Consensus 449 ~Hf---f~P~~~~~---------lvEvv~g-~~T--s~~~~~~~~~~~~~lg-k~pv~v~d-----~pGfi~NRl---~~ 504 (714)
T TIGR02437 449 MHF---FNPVHRMP---------LVEVIRG-EKS--SDETIATVVAYASKMG-KTPIVVND-----CPGFFVNRV---LF 504 (714)
T ss_pred Eec---CCCcccCc---------eEeecCC-CCC--CHHHHHHHHHHHHHcC-CEEEEeCC-----cccchHHHH---HH
Confidence 333 45654433 1235544 433 6899999999999987 46676643 345788884 56
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcC
Q 017997 228 SSVNAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 228 a~~nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
++++|...+.++ |+++++|..++..
T Consensus 505 ~~~~ea~~l~~e-G~~~~~ID~a~~~ 529 (714)
T TIGR02437 505 PYFGGFSKLLRD-GADFVRIDKVMEK 529 (714)
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHh
Confidence 889999888875 5999999998753
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-13 Score=128.39 Aligned_cols=261 Identities=17% Similarity=0.092 Sum_probs=155.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||+.+|..|+++ ||+|+++.+++ .+.+++....+....-+.. .....++++.++ ...+|+
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~D~ 75 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSD--YEAVRENGLQVDSVHGDFH-----LPPVQAYRSAED-MPPCDW 75 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCC--HHHHHhCCeEEEeCCCCee-----ecCceEEcchhh-cCCCCE
Confidence 8999999999999999999999 99999999986 3455554333221110000 011334455543 678999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (362)
||+|||+.. +.++++.+.+.+.++++|+. -+...+..+.+.+.+.+... ..-.+-.+-.+..|
T Consensus 76 vilavK~~~---------------~~~~~~~l~~~~~~~~~iv~-lqNG~~~~e~l~~~~~~~~v-~~g~~~~~a~~~~p 138 (313)
T PRK06249 76 VLVGLKTTA---------------NALLAPLIPQVAAPDAKVLL-LQNGLGVEEQLREILPAEHL-LGGLCFICSNRVGP 138 (313)
T ss_pred EEEEecCCC---------------hHhHHHHHhhhcCCCCEEEE-ecCCCCcHHHHHHHCCCCcE-EEEeeeEeEecCCC
Confidence 999998642 35677888888888776653 33444555666666543210 00011122234455
Q ss_pred CccccccCCCCeEEEecCCCcc----hHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhH----------------
Q 017997 162 GTAIQDLFNPDRVLIGGRETPE----GQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA---------------- 221 (362)
Q Consensus 162 g~a~~~~~~~~~viiG~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~---------------- 221 (362)
|...+. ...++.+|..+... ..+..+.+.++|+..+. ......|+....|.|++.|+
T Consensus 139 g~v~~~--~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~-~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l 215 (313)
T PRK06249 139 GVIHHL--AYGRVNLGYHSGPAADDGITARVEEGAALFRAAGI-DSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPL 215 (313)
T ss_pred eEEEEC--CCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCC-CceeCchHHHHHHhHhheecchhHHHHHhCCChHHH
Confidence 554332 23345677653211 03556677888887642 24456799999999999776
Q ss_pred -----HHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHhcCCCCC-CCCCccCCCCCcccChhHh--HHHHHHHHHhCC
Q 017997 222 -----FLAQRISSVNAMSALCEATGAN-----VSQVAFAVGTDSRI-GPKFLNASVGFGGSCFQKD--ILNLVYICECNG 288 (362)
Q Consensus 222 -----~~~~~ia~~nE~~~l~~~~g~d-----~~~v~~~~~~~~~i-~~~~~~~g~g~gg~cl~kD--~~~l~~~a~~~g 288 (362)
.+.+..+.+.|+..++++.|++ .+++++.+...+.. .+++.+-. .|.=..-| ..++++.++++|
T Consensus 216 ~~~~~~~~l~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~sSM~qD~~---~gr~tEid~i~G~vv~~a~~~G 292 (313)
T PRK06249 216 MADPDSRALIRALMAEVIQGAAACGHTLPEGYADHMLAVTERMPDYRPSMYHDFE---EGRPLELEAIYANPLAAARAAG 292 (313)
T ss_pred HhCccHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCChHHHHHH---CCCcccHHHHhhHHHHHHHHhC
Confidence 3456778899999999999986 33344433322110 01111000 01101111 236888999999
Q ss_pred CchhHHHHH
Q 017997 289 LPEVAEYWK 297 (362)
Q Consensus 289 ~~~~~~~~~ 297 (362)
++ .|..+
T Consensus 293 i~--~P~~~ 299 (313)
T PRK06249 293 CA--MPRVE 299 (313)
T ss_pred CC--CcHHH
Confidence 98 55443
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-13 Score=129.60 Aligned_cols=180 Identities=15% Similarity=0.180 Sum_probs=122.4
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
+++|+||| +|.||.++|..|.++ ||+|++||+++. ++.++++++|
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~--G~~V~~~d~~~~--------------------------------~~~~~~~~~a 143 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS--GYQVRILEQDDW--------------------------------DRAEDILADA 143 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC--CCeEEEeCCCcc--------------------------------hhHHHHHhcC
Confidence 36899998 999999999999999 999999998521 1234567899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|+||+|+|.. ...+.++++.+ ++++++|++.|++.+...+.+.+.+. + . ++..||-+.
T Consensus 144 DlVilavP~~---------------~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~----~-~-fvg~HPm~G 201 (374)
T PRK11199 144 GMVIVSVPIH---------------LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS----G-P-VLGLHPMFG 201 (374)
T ss_pred CEEEEeCcHH---------------HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC----C-C-EEeeCCCCC
Confidence 9999998842 24667788888 88999999887776554444433221 1 2 566788555
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCCh-hHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNL-WSAELSKLAANAFLAQRISSVNAMSALCE 238 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (362)
.+-. . +....+++... + ++++.+.+.++++.++ ..+..+++ +..+++++++-. ..+....++..+++
T Consensus 202 ~~~~---~-~~~~~vv~~~~-~--~~~~~~~~~~l~~~lG--~~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~ 269 (374)
T PRK11199 202 PDVG---S-LAKQVVVVCDG-R--QPEAYQWLLEQIQVWG--ARLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK 269 (374)
T ss_pred CCCc---c-cCCCEEEEcCC-C--CchHHHHHHHHHHHCC--CEEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3322 2 22223444322 1 3678889999999986 35555554 567788988833 45555566666665
Q ss_pred HhCCCHHHHHH
Q 017997 239 ATGANVSQVAF 249 (362)
Q Consensus 239 ~~g~d~~~v~~ 249 (362)
.+.|..++.+
T Consensus 270 -~~~~~~~~~~ 279 (374)
T PRK11199 270 -ENVDLEQLLA 279 (374)
T ss_pred -cCCCHHHHHH
Confidence 6777776644
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-14 Score=146.87 Aligned_cols=207 Identities=14% Similarity=0.160 Sum_probs=141.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC----C-CChHHHHhhhcCCCEEEecCHHhh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY----E-PGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~----e-~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
+.+|+|||+|.||..+|..++.+ |++|+++|++++.+++..+...... + ..+.+.-......+++.++|+++
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 411 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDK--GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSG- 411 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhC--CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-
Confidence 35899999999999999999999 9999999999998776432110000 0 00000000012357999999974
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--CCceEE
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GIKFQI 152 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g~~~~v 152 (362)
+++||+||.||+.. .+++ +++++++.+++++++|+ .++|++++... ...+..... |.+|
T Consensus 412 ~~~aDlViEAv~E~-----------l~~K--~~vf~~l~~~~~~~~ilasNTSsl~i~~l---a~~~~~p~r~ig~Hf-- 473 (737)
T TIGR02441 412 FKNADMVIEAVFED-----------LSLK--HKVIKEVEAVVPPHCIIASNTSALPIKDI---AAVSSRPEKVIGMHY-- 473 (737)
T ss_pred hccCCeehhhcccc-----------HHHH--HHHHHHHHhhCCCCcEEEEcCCCCCHHHH---HhhcCCccceEEEec--
Confidence 89999999999853 3444 78999999999999988 67777877543 222222111 3333
Q ss_pred eeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHH
Q 017997 153 LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 153 ~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
++|.+..+ ...||-| ..| ++++++.+..++..++ +.++.+.|. ..++.|.+ ..++++|
T Consensus 474 -f~P~~~m~---------LvEvv~g-~~T--s~~~~~~~~~~~~~lg-k~pv~v~d~-----pGFi~NRi---~~~~~~e 531 (737)
T TIGR02441 474 -FSPVDKMQ---------LLEIITH-DGT--SKDTLASAVAVGLKQG-KVVIVVKDG-----PGFYTTRC---LGPMLAE 531 (737)
T ss_pred -cCCcccCc---------eEEEeCC-CCC--CHHHHHHHHHHHHHCC-CeEEEECCc-----CCchHHHH---HHHHHHH
Confidence 45654432 2235544 434 6899999999999987 456666543 34677874 4589999
Q ss_pred HHHHHHHhCCCHHHHHHHh
Q 017997 233 MSALCEATGANVSQVAFAV 251 (362)
Q Consensus 233 ~~~l~~~~g~d~~~v~~~~ 251 (362)
...+.++ |+++++|..++
T Consensus 532 a~~lv~e-Gv~~~~ID~a~ 549 (737)
T TIGR02441 532 VIRLLQE-GVDPKKLDKLT 549 (737)
T ss_pred HHHHHHc-CCCHHHHHHHH
Confidence 9888865 67998888875
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-13 Score=124.25 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=112.9
Q ss_pred ceEEEEcCCh--------------------hHHHHHHHHHHcCCCCeEEEEeCCHHHHH-----HHHcCCCCCCCCChHH
Q 017997 2 VKICCIGAGY--------------------VGGPTMAVIALKCPSIEVAVVDISVSRIN-----AWNSDQLPIYEPGLDG 56 (362)
Q Consensus 2 mkI~VIGlG~--------------------~G~~lA~~la~~~~G~~V~~~d~~~~~~~-----~l~~~~~~~~e~~l~~ 56 (362)
|||.|.|+|+ -|.+||.+|+++ ||+|++||+++++.+ .+.+
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA--GheV~V~Drnrsa~e~e~~e~Lae------------ 66 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA--GHDVVLAEPNREFMSDDLWKKVED------------ 66 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC--CCEEEEEeCChhhhhhhhhHHHHH------------
Confidence 8999999994 588999999999 999999999987653 2332
Q ss_pred HHhhhcCCCEEEecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHH
Q 017997 57 VVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (362)
Q Consensus 57 ~~~~~~~~~l~~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~ 136 (362)
.+...++++.++++++|+||+|+|++ ..++++++.+.+.++++++||++||++|.+...
T Consensus 67 -------aGA~~AaS~aEAAa~ADVVIL~LPd~--------------aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~ 125 (341)
T TIGR01724 67 -------AGVKVVSDDKEAAKHGEIHVLFTPFG--------------KGTFSIARTIIEHVPENAVICNTCTVSPVVLYY 125 (341)
T ss_pred -------CCCeecCCHHHHHhCCCEEEEecCCH--------------HHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHH
Confidence 12456677888899999999999864 245677788999999999999999999988754
Q ss_pred -HHHHHHhccCCCceEE-eeCCcccccCccccccCCCCeEEEecCC----CcchHHHHHHHHHHHhccCCCCcEE
Q 017997 137 -IEKILTHNSKGIKFQI-LSNPEFLAEGTAIQDLFNPDRVLIGGRE----TPEGQKAVKALKDVYAHWVPEDRIL 205 (362)
Q Consensus 137 -l~~~l~~~~~g~~~~v-~~~Pe~~~~g~a~~~~~~~~~viiG~~~----~~~~~~~~~~~~~l~~~~~~~~~~~ 205 (362)
+.+.|+-.. .|+.| .|||- ..||..-++ .+++++.. .-.+++..+++.++-++.. +.++.
T Consensus 126 ~~e~~l~~~r--~d~~v~s~HP~-~vP~~~~~~-----~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~-~~~~~ 191 (341)
T TIGR01724 126 SLEKILRLKR--TDVGISSMHPA-AVPGTPQHG-----HYVIGGKPTAGKEMATEEQISKCVELAKSTG-KKAYV 191 (341)
T ss_pred HHHHHhhcCc--cccCeeccCCC-CCCCCCCCc-----eeeeccccccccccCCHHHHHHHHHHHHHhC-CCeee
Confidence 344444221 23333 36774 345554322 23344431 1335788888999888876 34443
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-13 Score=125.17 Aligned_cols=195 Identities=11% Similarity=0.152 Sum_probs=121.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC----eEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI----EVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~----~V~~~-d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
|||+|||+|.||.+|+..|.++ |+ +|++| |+++++.+.+.+. ++..+++..+++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~--g~~~~~~i~v~~~r~~~~~~~~~~~-------------------g~~~~~~~~e~~ 59 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS--GVVPPSRISTADDSNPARRDVFQSL-------------------GVKTAASNTEVV 59 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC--CCCCcceEEEEeCCCHHHHHHHHHc-------------------CCEEeCChHHHH
Confidence 8999999999999999999998 88 89999 9999998776541 245567777778
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe-eCCccccHHHHHHHHHhccCCCceEEeeC
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK-STVPVKTAEAIEKILTHNSKGIKFQILSN 155 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (362)
+++|+||+|+| |. .+.++++++.+.++++++|+.. ++++. +.+.+.+.. .. .+-..
T Consensus 60 ~~aDvVil~v~-~~--------------~~~~vl~~l~~~~~~~~~iIs~~~g~~~---~~l~~~~~~----~~-vvr~m 116 (266)
T PLN02688 60 KSSDVIILAVK-PQ--------------VVKDVLTELRPLLSKDKLLVSVAAGITL---ADLQEWAGG----RR-VVRVM 116 (266)
T ss_pred hcCCEEEEEEC-cH--------------HHHHHHHHHHhhcCCCCEEEEecCCCcH---HHHHHHcCC----CC-EEEEC
Confidence 89999999996 32 3677888888888888877632 33332 333322221 11 12234
Q ss_pred CcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHH--HhHHHHHHHHHHHHH
Q 017997 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLA--ANAFLAQRISSVNAM 233 (362)
Q Consensus 156 Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~--~N~~~~~~ia~~nE~ 233 (362)
|..... . .....++..+.. .+++..+.++++|+.++ ..++...-..-.++-+. ..+|.+..+.. +
T Consensus 117 P~~~~~---~---~~~~~~l~~~~~--~~~~~~~~v~~l~~~~G--~~~~~~e~~~d~~~~~~g~g~a~~~~~~~a---~ 183 (266)
T PLN02688 117 PNTPCL---V---GEAASVMSLGPA--ATADDRDLVATLFGAVG--KIWVVDEKLLDAVTGLSGSGPAYIFLAIEA---L 183 (266)
T ss_pred CCcHHH---H---hCceEEEEeCCC--CCHHHHHHHHHHHHhCC--CEEEeCHHHcchhHhhhcCHHHHHHHHHHH---H
Confidence 422111 0 111122333221 14778999999999986 33333211101111111 12333334444 4
Q ss_pred HHHHHHhCCCHHHHHHHhcC
Q 017997 234 SALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 234 ~~l~~~~g~d~~~v~~~~~~ 253 (362)
...+++.|+|+++..+++..
T Consensus 184 ~ea~~~~Gl~~~~a~~~~~~ 203 (266)
T PLN02688 184 ADGGVAAGLPRDVALSLAAQ 203 (266)
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 44488899999999988754
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.7e-14 Score=144.48 Aligned_cols=207 Identities=17% Similarity=0.178 Sum_probs=140.7
Q ss_pred CceEEEEcCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHcCCC----CCCC-CChHHHHhhhcCCCEEEecCHHh
Q 017997 1 MVKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVSRINAWNSDQL----PIYE-PGLDGVVKQCRGKNLFFSTDVEK 74 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la-~~~~G~~V~~~d~~~~~~~~l~~~~~----~~~e-~~l~~~~~~~~~~~l~~t~d~~~ 74 (362)
+.||+|||+|.||..+|..++ .+ |++|+++|++++.+++..+... ...+ ..+.+--......+++.++|++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 380 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKA--GIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR- 380 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-
Confidence 368999999999999999998 57 9999999999987765432100 0000 0000000001135789999996
Q ss_pred hhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--CCceE
Q 017997 75 HVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GIKFQ 151 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g~~~~ 151 (362)
++++||+||.|+|.. .+++ ++++.++.+++++++|+ .++|++++... ...+..... |.+|
T Consensus 381 ~~~~adlViEav~E~-----------l~~K--~~v~~~l~~~~~~~~ilasnTS~l~i~~l---a~~~~~p~r~~g~Hf- 443 (699)
T TIGR02440 381 GFKDVDIVIEAVFED-----------LALK--HQMVKDIEQECAAHTIFASNTSSLPIGQI---AAAASRPENVIGLHY- 443 (699)
T ss_pred HhccCCEEEEecccc-----------HHHH--HHHHHHHHhhCCCCcEEEeCCCCCCHHHH---HHhcCCcccEEEEec-
Confidence 589999999999852 3334 78999999999999988 66777776543 222222111 3332
Q ss_pred EeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHH
Q 017997 152 ILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVN 231 (362)
Q Consensus 152 v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (362)
++|.+..+ ...||-| ..| ++++++.+..+++.++ +.++.+.| ...++.|. +..+++|
T Consensus 444 --fnP~~~~~---------lVEvv~g-~~T--~~~~~~~~~~~~~~~g-k~pv~v~d-----~pGfi~nR---l~~~~~~ 500 (699)
T TIGR02440 444 --FSPVEKMP---------LVEVIPH-AGT--SEQTIATTVALAKKQG-KTPIVVAD-----KAGFYVNR---ILAPYMN 500 (699)
T ss_pred --CCccccCc---------eEEEeCC-CCC--CHHHHHHHHHHHHHcC-CeEEEEcc-----ccchHHHH---HHHHHHH
Confidence 35544432 1235544 434 6899999999999987 46776644 34678888 4568999
Q ss_pred HHHHHHHHhCCCHHHHHHHh
Q 017997 232 AMSALCEATGANVSQVAFAV 251 (362)
Q Consensus 232 E~~~l~~~~g~d~~~v~~~~ 251 (362)
|...+.++ |++++++..++
T Consensus 501 Ea~~l~~~-G~~~~dID~a~ 519 (699)
T TIGR02440 501 EAARLLLE-GEPVEHIDKAL 519 (699)
T ss_pred HHHHHHHC-CCCHHHHHHHH
Confidence 99888874 57999998887
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-13 Score=143.85 Aligned_cols=208 Identities=16% Similarity=0.158 Sum_probs=141.7
Q ss_pred CceEEEEcCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHcCCCC----CCCC-ChHHHHhhhcCCCEEEecCHHh
Q 017997 1 MVKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVSRINAWNSDQLP----IYEP-GLDGVVKQCRGKNLFFSTDVEK 74 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la-~~~~G~~V~~~d~~~~~~~~l~~~~~~----~~e~-~l~~~~~~~~~~~l~~t~d~~~ 74 (362)
+.||+|||+|.||..+|..++ .. |++|+++|++++.++...+.... ..+. .+.+........+++.++|++
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 385 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA--GLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR- 385 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH-
Confidence 368999999999999999999 77 99999999999877653321000 0000 000000001235799999985
Q ss_pred hhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--CCceE
Q 017997 75 HVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GIKFQ 151 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g~~~~ 151 (362)
++++||+||.|+|.. .+++ +++++++.+++++++++ .++|++++.... ..+..... |.+|
T Consensus 386 ~~~~aDlViEav~E~-----------~~~K--~~v~~~le~~~~~~~ilasnTS~l~i~~la---~~~~~p~r~ig~Hf- 448 (708)
T PRK11154 386 GFKHADVVIEAVFED-----------LALK--QQMVAEVEQNCAPHTIFASNTSSLPIGQIA---AAAARPEQVIGLHY- 448 (708)
T ss_pred HhccCCEEeeccccc-----------HHHH--HHHHHHHHhhCCCCcEEEECCCCCCHHHHH---HhcCcccceEEEec-
Confidence 589999999999852 3344 88999999999999988 667777776432 22222111 3333
Q ss_pred EeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHH
Q 017997 152 ILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVN 231 (362)
Q Consensus 152 v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (362)
++|.+..+ ...||-| ..| ++++++.+..++..++ +.++.+.| ...++.|. +..+++|
T Consensus 449 --f~P~~~~~---------lVEvv~g-~~T--s~~~~~~~~~~~~~~g-k~pv~v~d-----~pGfi~nR---l~~~~~~ 505 (708)
T PRK11154 449 --FSPVEKMP---------LVEVIPH-AKT--SAETIATTVALAKKQG-KTPIVVRD-----GAGFYVNR---ILAPYIN 505 (708)
T ss_pred --CCccccCc---------eEEEECC-CCC--CHHHHHHHHHHHHHcC-CceEEEec-----cCcHHHHH---HHHHHHH
Confidence 45654432 2236544 333 6899999999999887 35666543 34567787 4569999
Q ss_pred HHHHHHHHhCCCHHHHHHHhc
Q 017997 232 AMSALCEATGANVSQVAFAVG 252 (362)
Q Consensus 232 E~~~l~~~~g~d~~~v~~~~~ 252 (362)
|...+.++ |++++++..++.
T Consensus 506 EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 506 EAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred HHHHHHHc-CCCHHHHHHHHH
Confidence 99999886 779988888864
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-12 Score=122.88 Aligned_cols=168 Identities=20% Similarity=0.182 Sum_probs=111.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G--~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
++|+|||+|.||.++|..|.+. | ++|++||+++++.+.+++... ....+++.+++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~--g~~~~V~~~dr~~~~~~~a~~~g~-----------------~~~~~~~~~~~~~~a 67 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL--GLAGEIVGADRSAETRARARELGL-----------------GDRVTTSAAEAVKGA 67 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhCCC-----------------CceecCCHHHHhcCC
Confidence 6899999999999999999988 6 489999999998887764211 112345666678999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc-
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF- 158 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~- 158 (362)
|+||+|+|.+ ...++++++.+.++++.+|++.+++.....+.+.+.+.. +.. ++..+|-.
T Consensus 68 DvViiavp~~---------------~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~---~~~-~v~~hPm~g 128 (307)
T PRK07502 68 DLVILCVPVG---------------ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE---GVH-FIPGHPLAG 128 (307)
T ss_pred CEEEECCCHH---------------HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC---CCe-EEeCCCCCC
Confidence 9999998843 246677888888888988887666654444444333221 222 34455643
Q ss_pred ---cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChh
Q 017997 159 ---LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLW 210 (362)
Q Consensus 159 ---~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 210 (362)
.+++.+..+++....+++... ...+++..+.+.++++.++ .++...++.
T Consensus 129 ~e~~G~~~a~~~l~~g~~~~l~~~-~~~~~~~~~~~~~l~~~lG--~~~~~~~~~ 180 (307)
T PRK07502 129 TEHSGPDAGFAELFENRWCILTPP-EGTDPAAVARLTAFWRALG--ARVEEMDPE 180 (307)
T ss_pred CcccchhhcCHHHHCCCeEEEeCC-CCCCHHHHHHHHHHHHHcC--CEEEEcCHH
Confidence 344444444444444445422 1224678899999999986 355555544
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-13 Score=126.31 Aligned_cols=207 Identities=14% Similarity=0.179 Sum_probs=153.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh---hhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK---HVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~---a~~~ 78 (362)
+.|+|||+|.||..+|.+++++ ||+|.+|+|++++.+.+-++... .+++..+.++++ .++.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~--G~~VavyNRt~~ktd~f~~~~~~--------------~k~i~~~~sieefV~~Le~ 67 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH--GYTVAVYNRTTEKTDEFLAERAK--------------GKNIVPAYSIEEFVASLEK 67 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc--CceEEEEeCCHHHHHHHHHhCcc--------------CCCccccCcHHHHHHHhcC
Confidence 4699999999999999999999 99999999999999987654221 123433344433 3677
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-CccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
.--|+++|.... .+...++++.++|.+++|||+-.. ..+.|.++..+. .+. |.. |+..+-+
T Consensus 68 PRkI~lMVkAG~--------------~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL-~~~--Gi~-FvG~GVS 129 (473)
T COG0362 68 PRKILLMVKAGT--------------PVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKEL-SEK--GIL-FVGMGVS 129 (473)
T ss_pred CceEEEEEecCC--------------cHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHH-Hhc--CCe-EEecccc
Confidence 888999987531 356789999999999999998665 456666665443 333 333 3433333
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC---CCc--EEeCChhHHHHHHHHHhHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP---EDR--ILTTNLWSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~---~~~--~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
-..+|. ++.|.+|.||. +++.+.+.++|..+.. +.+ .+++.-+.+.++|+++|..-..-+.++.|
T Consensus 130 GGEeGA-----~~GPSiMpGG~-----~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE 199 (473)
T COG0362 130 GGEEGA-----RHGPSIMPGGQ-----KEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAE 199 (473)
T ss_pred cccccc-----ccCCCcCCCCC-----HHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHH
Confidence 233332 55667899987 8999999999998742 122 23455578899999999999999999999
Q ss_pred HHHHHHH-hCCCHHHHHHHhc
Q 017997 233 MSALCEA-TGANVSQVAFAVG 252 (362)
Q Consensus 233 ~~~l~~~-~g~d~~~v~~~~~ 252 (362)
...+.+. +|.+.+++.+...
T Consensus 200 ~Y~ilk~~lgls~~ei~~vF~ 220 (473)
T COG0362 200 AYDILKDGLGLSAEEIAEVFE 220 (473)
T ss_pred HHHHHHHhcCCCHHHHHHHHH
Confidence 9999998 8998888777664
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-12 Score=119.81 Aligned_cols=197 Identities=12% Similarity=0.184 Sum_probs=124.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC----CeEEEEeCCH-HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G----~~V~~~d~~~-~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
|||+|||+|.||.+|+..|.++ | ++|+++|+++ ++.+.+.+. -+++.+++..+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~--g~~~~~~v~v~~r~~~~~~~~l~~~------------------~g~~~~~~~~e~~ 63 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA--NVVKGEQITVSNRSNETRLQELHQK------------------YGVKGTHNKKELL 63 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCCCcceEEEECCCCHHHHHHHHHh------------------cCceEeCCHHHHH
Confidence 8999999999999999999998 6 8999999975 466666541 1245567777778
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe-eCCccccHHHHHHHHHhccCCCceEEeeC
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK-STVPVKTAEAIEKILTHNSKGIKFQILSN 155 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (362)
+++|+||+|||.. .+.++++++.+.++++++||.. +++++.+.+++ ++.. .. .+-..
T Consensus 64 ~~aDvVilav~p~---------------~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~---~~~~---~~-v~r~m 121 (279)
T PRK07679 64 TDANILFLAMKPK---------------DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNL---LQKD---VP-IIRAM 121 (279)
T ss_pred hcCCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHH---cCCC---Ce-EEEEC
Confidence 8999999999842 3567778888888888888764 77776654442 3221 11 22234
Q ss_pred CcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHh--HHHHHHHHHHHHH
Q 017997 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAAN--AFLAQRISSVNAM 233 (362)
Q Consensus 156 Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N--~~~~~~ia~~nE~ 233 (362)
|... . +. .....+++++.+ .+++..+.++++|+.++ ..+....-.---++-+... +| ...++.-+
T Consensus 122 Pn~~--~-~~---~~~~t~~~~~~~--~~~~~~~~v~~l~~~~G--~~~~v~e~~~~~~~a~~Gsgpa~---~~~~~eal 188 (279)
T PRK07679 122 PNTS--A-AI---LKSATAISPSKH--ATAEHIQTAKALFETIG--LVSVVEEEDMHAVTALSGSGPAY---IYYVVEAM 188 (279)
T ss_pred CCHH--H-HH---hcccEEEeeCCC--CCHHHHHHHHHHHHhCC--cEEEeCHHHhhhHHHhhcCHHHH---HHHHHHHH
Confidence 4211 1 11 111135556543 24678899999999987 3444321000001111111 22 22334444
Q ss_pred HHHHHHhCCCHHHHHHHhcC
Q 017997 234 SALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 234 ~~l~~~~g~d~~~v~~~~~~ 253 (362)
...+++.|+|.++..+++..
T Consensus 189 ~e~~~~~Gl~~~~a~~~~~~ 208 (279)
T PRK07679 189 EKAAKKIGLKEDVAKSLILQ 208 (279)
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 55689999999888887654
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-11 Score=114.45 Aligned_cols=167 Identities=19% Similarity=0.205 Sum_probs=110.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEE--EeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCH-Hhhhc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAV--VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDV-EKHVS 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~--~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~-~~a~~ 77 (362)
+|+|+|+|+|.||.++|..|.++ |+.|.+ +|++.+..+.-.+... .-..+.+. .+++.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~--g~~v~i~g~d~~~~~~~~a~~lgv-----------------~d~~~~~~~~~~~~ 63 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEA--GLVVRIIGRDRSAATLKAALELGV-----------------IDELTVAGLAEAAA 63 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHc--CCeEEEEeecCcHHHHHHHhhcCc-----------------ccccccchhhhhcc
Confidence 47999999999999999999999 887754 5555555443332110 01222333 45578
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC-CCceEEeeCC
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNP 156 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~-g~~~~v~~~P 156 (362)
.+|+||+|||-. .+.++++++.++++++++|++.+++.-. +.+.+++..+ .. -++..+|
T Consensus 64 ~aD~VivavPi~---------------~~~~~l~~l~~~l~~g~iv~Dv~S~K~~----v~~a~~~~~~~~~-~~vg~HP 123 (279)
T COG0287 64 EADLVIVAVPIE---------------ATEEVLKELAPHLKKGAIVTDVGSVKSS----VVEAMEKYLPGDV-RFVGGHP 123 (279)
T ss_pred cCCEEEEeccHH---------------HHHHHHHHhcccCCCCCEEEecccccHH----HHHHHHHhccCCC-eeEecCC
Confidence 899999999842 4678889999999999999875544333 3333333322 12 3577788
Q ss_pred cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhH
Q 017997 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS 211 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 211 (362)
=+..+ +..+++.+..+|+- +....+.+.++.+.++|+..+ ..++.++++.
T Consensus 124 M~G~~--~~~~lf~~~~~vlt-p~~~~~~~~~~~~~~~~~~~g--a~~v~~~~ee 173 (279)
T COG0287 124 MFGPE--ADAGLFENAVVVLT-PSEGTEKEWVEEVKRLWEALG--ARLVEMDAEE 173 (279)
T ss_pred CCCCc--ccccccCCCEEEEc-CCCCCCHHHHHHHHHHHHHcC--CEEEEcChHH
Confidence 55443 34456666666654 444334678999999999986 4677787765
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-12 Score=118.20 Aligned_cols=197 Identities=16% Similarity=0.166 Sum_probs=125.4
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCC---CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPS---IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G---~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
||+|+|||+|.||..++..|.++ | ++|++||+++++.+.+.+.. ++..+++.++++.
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~--g~~~~~v~v~~r~~~~~~~~~~~~------------------g~~~~~~~~~~~~ 61 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS--GVPAKDIIVSDPSPEKRAALAEEY------------------GVRAATDNQEAAQ 61 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC--CCCcceEEEEcCCHHHHHHHHHhc------------------CCeecCChHHHHh
Confidence 68999999999999999999988 7 78999999999988776520 1344566777788
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE-eeCCccccHHHHHHHHHhccCCCceEEeeCC
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGIKFQILSNP 156 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~-~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (362)
++|+||+|+|.. .+.++++.+.+++ +++|+. .+.++ .+.+.+.+.. +.. .+-.+|
T Consensus 62 ~advVil~v~~~---------------~~~~v~~~l~~~~--~~~vvs~~~gi~---~~~l~~~~~~---~~~-iv~~~P 117 (267)
T PRK11880 62 EADVVVLAVKPQ---------------VMEEVLSELKGQL--DKLVVSIAAGVT---LARLERLLGA---DLP-VVRAMP 117 (267)
T ss_pred cCCEEEEEcCHH---------------HHHHHHHHHHhhc--CCEEEEecCCCC---HHHHHHhcCC---CCc-EEEecC
Confidence 999999999732 4678888888776 345443 22232 2344444331 112 233555
Q ss_pred cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHH-HHHhHHHHHHHHHHHHHHH
Q 017997 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSK-LAANAFLAQRISSVNAMSA 235 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~K-l~~N~~~~~~ia~~nE~~~ 235 (362)
.... .+......+.-+ ...+++..+.++.+|+.++ ..+...+...-+..= +..+. -+....++..+..
T Consensus 118 ~~p~------~~~~~~~~i~~~--~~~~~~~~~~v~~l~~~lG--~~~~~~~e~~~d~~~a~~~~~-pa~~~~~~~~~~~ 186 (267)
T PRK11880 118 NTPA------LVGAGMTALTAN--ALVSAEDRELVENLLSAFG--KVVWVDDEKQMDAVTAVSGSG-PAYVFLFIEALAD 186 (267)
T ss_pred CchH------HHcCceEEEecC--CCCCHHHHHHHHHHHHhCC--eEEEECChHhcchHHHHhcCh-HHHHHHHHHHHHH
Confidence 3211 011111222222 2235788999999999987 355555433222222 22221 2233567788888
Q ss_pred HHHHhCCCHHHHHHHhc
Q 017997 236 LCEATGANVSQVAFAVG 252 (362)
Q Consensus 236 l~~~~g~d~~~v~~~~~ 252 (362)
.+.+.|++.++..+++.
T Consensus 187 ~~~~~Gl~~~~a~~~~~ 203 (267)
T PRK11880 187 AGVKLGLPREQARKLAA 203 (267)
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 88989999988777654
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-12 Score=123.99 Aligned_cols=177 Identities=19% Similarity=0.202 Sum_probs=113.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||.++|..|.++ |++|.+|+++++..+......... .-..++++++++++||+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~--G~~v~i~~~~~~~~~~~~a~~~~~---------------~~~~~~~~~~~~~~aDl 63 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA--GPDVFIIGYDPSAAQLARALGFGV---------------IDELAADLQRAAAEADL 63 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc--CCCeEEEEeCCCHHHHHHHhcCCC---------------CcccccCHHHHhcCCCE
Confidence 4899999999999999999999 899999998877655433211100 01234567777899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh-hcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCC----
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP---- 156 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~-~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P---- 156 (362)
||+|||.. .+.++++++.+ .++++.+|++.+++.....+.+...+.. +.. ++..+|
T Consensus 64 VilavP~~---------------~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~---~~~-~ig~HPMaG~ 124 (359)
T PRK06545 64 IVLAVPVD---------------ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGD---LIR-FVGGHPMAGS 124 (359)
T ss_pred EEEeCCHH---------------HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC---CCe-EEeeCCcCcC
Confidence 99999842 35778888887 4788888888777766555555443222 112 444566
Q ss_pred cccccCccccccCCC-CeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhH-HHHHHHH
Q 017997 157 EFLAEGTAIQDLFNP-DRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS-AELSKLA 218 (362)
Q Consensus 157 e~~~~g~a~~~~~~~-~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-ae~~Kl~ 218 (362)
|+.++..+..+++.. ..++..+. ..+++..+.++++++.++ ..+..++... ..++.++
T Consensus 125 e~sG~~aa~~~lf~g~~~il~~~~--~~~~~~~~~v~~l~~~lG--a~~v~~~~~~HD~~~A~v 184 (359)
T PRK06545 125 HKSGVAAARADLFENAPWVLTPDD--HTDPDAVAELKDLLSGTG--AKFVVLDAEEHDRAVALV 184 (359)
T ss_pred chhhHHHhcHHHHCCCcEEEecCC--CCCHHHHHHHHHHHHHcC--CEEEECCHHHHhHHHhHh
Confidence 333333344444433 34443322 225788999999999986 3555555433 3344433
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-12 Score=117.59 Aligned_cols=197 Identities=19% Similarity=0.207 Sum_probs=122.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC----eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI----EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~----~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
|||+|||+|.||.+|+..|.++ |+ +|+++|+++++++.+.+. ..+..+++..++++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~--g~~~~~~I~v~~r~~~~~~~l~~~------------------~g~~~~~~~~e~~~ 62 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK--NIVSPDQIICSDLNVSNLKNASDK------------------YGITITTNNNEVAN 62 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC--CCCCCceEEEECCCHHHHHHHHHh------------------cCcEEeCCcHHHHh
Confidence 6999999999999999999987 54 799999999998877541 01345667777788
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+||+||+||| |. .+.++++++.++++++++|| |-...-+.+.+++.+... .. .+
T Consensus 63 ~aDiIiLavk-P~--------------~~~~vl~~l~~~~~~~~lvI--Si~AGi~i~~l~~~l~~~---~~-vv----- 116 (272)
T PRK12491 63 SADILILSIK-PD--------------LYSSVINQIKDQIKNDVIVV--TIAAGKSIKSTENEFDRK---LK-VI----- 116 (272)
T ss_pred hCCEEEEEeC-hH--------------HHHHHHHHHHHhhcCCcEEE--EeCCCCcHHHHHHhcCCC---Cc-EE-----
Confidence 9999999998 42 46788889988888887765 333333456666655421 11 12
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHH--HHhHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKL--AANAFLAQRISSVNAMSA 235 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl--~~N~~~~~~ia~~nE~~~ 235 (362)
|..|-.+..-.... ..+..+ +..+++..+.++.+|+.++. .+... +.++--+ +.-+-=+....++..+..
T Consensus 117 R~MPN~~~~vg~g~-t~~~~~--~~~~~~~~~~v~~lf~~~G~--~~~~~---E~~~d~~talsgsgPAf~~~~~eal~~ 188 (272)
T PRK12491 117 RVMPNTPVLVGEGM-SALCFN--EMVTEKDIKEVLNIFNIFGQ--TEVVN---EKLMDVVTSISGSSPAYVYMFIEAMAD 188 (272)
T ss_pred EECCChHHHHcCce-EEEEeC--CCCCHHHHHHHHHHHHcCCC--EEEEc---HHHhhhHHHhccCcHHHHHHHHHHHHH
Confidence 22222221111111 222222 22346678899999999873 44332 1111110 111111234456667777
Q ss_pred HHHHhCCCHHHHHHHhc
Q 017997 236 LCEATGANVSQVAFAVG 252 (362)
Q Consensus 236 l~~~~g~d~~~v~~~~~ 252 (362)
.+.+.|++.++..+++.
T Consensus 189 a~v~~Gl~~~~A~~l~~ 205 (272)
T PRK12491 189 AAVLGGMPRKQAYKFAA 205 (272)
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 78888888877766554
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-11 Score=115.17 Aligned_cols=208 Identities=22% Similarity=0.221 Sum_probs=142.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|+|+|.||+-+|..|+++ |++|+++-|++. ++++++.+..+.+..-.. .....+.+..+....+|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~--g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~-------~~~~~~~~~~~~~~~~Dl 70 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA--GHDVTLLVRSRR-LEALKKKGLRIEDEGGNF-------TTPVVAATDAEALGPADL 70 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCeEEEEecHHH-HHHHHhCCeEEecCCCcc-------ccccccccChhhcCCCCE
Confidence 8999999999999999999999 889999988766 899998766655433210 011222222334779999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhcc--CCCceEEeeCCccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS--KGIKFQILSNPEFL 159 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~--~g~~~~v~~~Pe~~ 159 (362)
||++|++. ++.++++.+.+.+++.+.|+. -....|..+.+.+...+.. .| .+.++-.+-
T Consensus 71 viv~vKa~---------------q~~~al~~l~~~~~~~t~vl~-lqNG~g~~e~l~~~~~~~~il~G---~~~~~a~~~ 131 (307)
T COG1893 71 VIVTVKAY---------------QLEEALPSLAPLLGPNTVVLF-LQNGLGHEEELRKILPKETVLGG---VTTHGAVRE 131 (307)
T ss_pred EEEEeccc---------------cHHHHHHHhhhcCCCCcEEEE-EeCCCcHHHHHHHhCCcceEEEE---EeeeeeEec
Confidence 99999864 257899999999999887653 2345566666665555431 12 122333444
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhH------------------
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA------------------ 221 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~------------------ 221 (362)
.+|...+.- ...+.+|..+.. .++..+.+.++|+...- ...+..|+....|.|++-|+
T Consensus 132 ~~g~v~~~g--~g~~~ig~~~~~-~~~~~~~i~~~~~~a~~-~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~ 207 (307)
T COG1893 132 GPGHVVHTG--LGDTVIGELRGG-RDELVKALAELFKEAGL-EVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLE 207 (307)
T ss_pred CCceEEEec--CCcEEEccCCCC-chHHHHHHHHHHHhCCC-CeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhc
Confidence 566654332 224556765432 13567778888876542 23345799999999999887
Q ss_pred ---HHHHHHHHHHHHHHHHHHhCC
Q 017997 222 ---FLAQRISSVNAMSALCEATGA 242 (362)
Q Consensus 222 ---~~~~~ia~~nE~~~l~~~~g~ 242 (362)
.+.+..+.+.|....+...|+
T Consensus 208 ~~~~~~l~~~~~~E~~~v~~~~g~ 231 (307)
T COG1893 208 NPEARALIRALVAEVVAVARAEGV 231 (307)
T ss_pred ChhHHHHHHHHHHHHHHHHHhccC
Confidence 457778899999999999883
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.1e-11 Score=110.63 Aligned_cols=165 Identities=14% Similarity=0.132 Sum_probs=105.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh-cCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (362)
|+|+|||+|.||.++|..|.+. |++|++||+++.. +...+- ++...++.++++ .++|
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~--G~~V~~~d~~~~~-~~a~~~-------------------gv~~~~~~~e~~~~~aD 94 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQ--GHTVLATSRSDYS-DIAAEL-------------------GVSFFRDPDDFCEEHPD 94 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECccHH-HHHHHc-------------------CCeeeCCHHHHhhCCCC
Confidence 7999999999999999999988 8999999998642 222210 123456666655 4799
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHH-HhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVI-ADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i-~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
+||+|||.. .+.++++++ .++++++++|++.+++.....+.+.+.+.. +.. ++..+|-+.
T Consensus 95 vVilavp~~---------------~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~---~~~-~V~~HPmaG 155 (304)
T PLN02256 95 VVLLCTSIL---------------STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE---EFD-ILCTHPMFG 155 (304)
T ss_pred EEEEecCHH---------------HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC---CCe-EEecCCCCC
Confidence 999998842 357777888 567888998887665543334444433322 222 577788554
Q ss_pred ccCccccccCCCCeEEEecC---CCcchHHHHHHHHHHHhccCCCCcEEeCChhH
Q 017997 160 AEGTAIQDLFNPDRVLIGGR---ETPEGQKAVKALKDVYAHWVPEDRILTTNLWS 211 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 211 (362)
.+... ..+... .+++... ....+++..+.++++++.++ ..+..++++.
T Consensus 156 ~e~~~-~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~l~~~lG--a~v~~~~~ee 206 (304)
T PLN02256 156 PESGK-GGWAGL-PFVYDKVRIGDEGEREARCERFLDIFEEEG--CRMVEMSCEE 206 (304)
T ss_pred CCCCc-cccCCC-eEEEecceecCCCCCHHHHHHHHHHHHHCC--CEEEEeCHHH
Confidence 43221 011111 2323221 01124678899999999986 4677777765
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-12 Score=120.72 Aligned_cols=202 Identities=15% Similarity=0.183 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHcCCCCeEEEEeCCHHH-------HHHHHcCC----CCCCCCC-hHHHHhhhcCCCEEEecC--HHhhhc
Q 017997 12 VGGPTMAVIALKCPSIEVAVVDISVSR-------INAWNSDQ----LPIYEPG-LDGVVKQCRGKNLFFSTD--VEKHVS 77 (362)
Q Consensus 12 ~G~~lA~~la~~~~G~~V~~~d~~~~~-------~~~l~~~~----~~~~e~~-l~~~~~~~~~~~l~~t~d--~~~a~~ 77 (362)
||..+|..++.+ |++|++||++++. ++...+.. ....+.+ +.+--......+++++++ +.++++
T Consensus 1 MG~giA~~~a~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~ 78 (314)
T PRK08269 1 MGQGIALAFAFA--GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALA 78 (314)
T ss_pred CcHHHHHHHHhC--CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhc
Confidence 799999999999 9999999999853 22111100 0000000 000000012356888765 667789
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC--CCceEEeeC
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK--GIKFQILSN 155 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~--g~~~~v~~~ 155 (362)
+||+||.|||... +++ ...+.++.+.+++++++ .||.++-....+...+..... |.+| ++
T Consensus 79 ~aD~ViEav~E~~-----------~~K--~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf---~~ 140 (314)
T PRK08269 79 DADLVFEAVPEVL-----------DAK--REALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHW---LN 140 (314)
T ss_pred cCCEEEECCcCCH-----------HHH--HHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEec---CC
Confidence 9999999998632 333 66788899999999887 244333344455443322111 2222 23
Q ss_pred CcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 017997 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (362)
Q Consensus 156 Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (362)
|.+..+ ...| +++..+ ++++++++.++++.++ +.++++.+... .+ ...+..++++|...
T Consensus 141 Pp~~~~---------lvEV-v~g~~t--~~e~~~~~~~ll~~lG-k~~v~v~d~~G-----fi---~nri~~~~l~EAl~ 199 (314)
T PRK08269 141 PAYLMP---------LVEV-SPSDAT--DPAVVDRLAALLERIG-KVPVVCGPSPG-----YI---VPRIQALAMNEAAR 199 (314)
T ss_pred ccccCc---------eEEE-eCCCCC--CHHHHHHHHHHHHHcC-CcEEEecCCCC-----cc---hHHHHHHHHHHHHH
Confidence 333322 1124 465544 6899999999999987 35676666432 23 34467899999999
Q ss_pred HHHHhCCCHHHHHHHhcCC
Q 017997 236 LCEATGANVSQVAFAVGTD 254 (362)
Q Consensus 236 l~~~~g~d~~~v~~~~~~~ 254 (362)
++++.++|++++.+++...
T Consensus 200 l~e~g~~~~e~iD~a~~~g 218 (314)
T PRK08269 200 MVEEGVASAEDIDKAIRTG 218 (314)
T ss_pred HHHhCCCCHHHHHHHHHhC
Confidence 9999999999999998754
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-11 Score=112.94 Aligned_cols=190 Identities=14% Similarity=0.186 Sum_probs=121.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCe---EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIE---VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~---V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
|||+|||+|.||.+++..|.+. |+. +.+|++++++.+.+.+.. +....+++..+++++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~--g~~~~~i~v~~r~~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~ 61 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS--PADVSEIIVSPRNAQIAARLAERF-----------------PKVRIAKDNQAVVDR 61 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCChheEEEECCCHHHHHHHHHHc-----------------CCceEeCCHHHHHHh
Confidence 6999999999999999999988 654 588999999888765421 124556777777889
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
+|+||+|+| |. .+.++++++. +.++++|+. +..+-+.+.+.+.++... . .+-..|..
T Consensus 62 aDvVilav~-p~--------------~~~~vl~~l~--~~~~~~vis--~~ag~~~~~l~~~~~~~~---~-~~r~~P~~ 118 (258)
T PRK06476 62 SDVVFLAVR-PQ--------------IAEEVLRALR--FRPGQTVIS--VIAATDRAALLEWIGHDV---K-LVRAIPLP 118 (258)
T ss_pred CCEEEEEeC-HH--------------HHHHHHHHhc--cCCCCEEEE--ECCCCCHHHHHHHhCCCC---C-EEEECCCC
Confidence 999999998 42 3466666652 457777764 445556677777664321 1 23345542
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHH-HHhHHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKL-AANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl-~~N~~~~~~ia~~nE~~~l~ 237 (362)
.. . ..... ..+.++ . +.++++|+.++. .+...+... .-.+ +..++.+....++.++..++
T Consensus 119 ~~--a---~~~g~-t~~~~~------~---~~~~~l~~~lG~--~~~~~~e~~--~d~~~a~~s~~a~~~~~~~~~~~~~ 179 (258)
T PRK06476 119 FV--A---ERKGV-TAIYPP------D---PFVAALFDALGT--AVECDSEEE--YDLLAAASALMATYFGILETATGWL 179 (258)
T ss_pred hh--h---hCCCC-eEecCC------H---HHHHHHHHhcCC--cEEECChHh--ccceeehhccHHHHHHHHHHHHHHH
Confidence 11 1 11111 222221 1 478899999873 444443211 1111 00124444556889999999
Q ss_pred HHhCCCHHHHHHHhc
Q 017997 238 EATGANVSQVAFAVG 252 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~ 252 (362)
++.|+|.++..+++.
T Consensus 180 ~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 180 EEQGLKRQKARAYLA 194 (258)
T ss_pred HHcCCCHHHHHHHHH
Confidence 999999988888765
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.9e-11 Score=114.00 Aligned_cols=156 Identities=10% Similarity=0.064 Sum_probs=104.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|+|||+ |.||.++|..|.+.. +++|+++|++.+ ..+++.+++++||
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~d~------------------------------~~~~~~~~v~~aD 53 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPADP------------------------------GSLDPATLLQRAD 53 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCCcc------------------------------ccCCHHHHhcCCC
Confidence 58999999 999999999999753 899999998410 1234566789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh---cCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV---SKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~---l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+||+|+|. +.+.+.++++.++ ++++++|++.+++.....+.+ + +.. .. ++..||=
T Consensus 54 lVilavPv---------------~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~-~~~--~~-fVG~HPM 111 (370)
T PRK08818 54 VLIFSAPI---------------RHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---L-ASQ--AE-VVGLHPM 111 (370)
T ss_pred EEEEeCCH---------------HHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---H-hcC--CC-EEeeCCC
Confidence 99999874 2467788888876 789999988655543322222 2 221 23 6788886
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHH-HHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSA-ELSKLA 218 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a-e~~Kl~ 218 (362)
+..+.. +.+....+++-.. . ..+..+.++++++.++ ..+..++++.- +++-++
T Consensus 112 aG~E~s---~lf~g~~~iltp~-~--~~~~~~~v~~l~~~~G--a~v~~~~aeeHD~~~A~v 165 (370)
T PRK08818 112 TAPPKS---PTLKGRVMVVCEA-R--LQHWSPWVQSLCSALQ--AECVYATPEHHDRVMALV 165 (370)
T ss_pred CCCCCC---cccCCCeEEEeCC-C--chhHHHHHHHHHHHcC--CEEEEcCHHHHHHHHHHH
Confidence 554433 2344444544422 2 2455778899999886 46777887653 344444
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.9e-12 Score=117.95 Aligned_cols=207 Identities=14% Similarity=0.098 Sum_probs=134.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|+|+|.||+.+|..|++. |++|++++|++++++++++ ++..+...+-.... .... .+.+. ...+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~------~~~~-~~~~~-~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLY------AIPA-ETADA-AEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhcCCeEEeeCCcceee------ccCC-CCccc-ccccC
Confidence 8999999999999999999998 9999999999999999975 33333222110000 0111 11222 46889
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEe-eCCccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQIL-SNPEFL 159 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~-~~Pe~~ 159 (362)
+||+||++. ++.++++.+.+++.+++.|+. -....+..+.+.+.+.+... -..+. .+..+.
T Consensus 73 ~viv~vK~~---------------~~~~al~~l~~~l~~~t~vv~-lQNGv~~~e~l~~~~~~~~v--~~g~~~~ga~~~ 134 (305)
T PRK05708 73 RLLLACKAY---------------DAEPAVASLAHRLAPGAELLL-LQNGLGSQDAVAARVPHARC--IFASSTEGAFRD 134 (305)
T ss_pred EEEEECCHH---------------hHHHHHHHHHhhCCCCCEEEE-EeCCCCCHHHHHHhCCCCcE--EEEEeeeceecC
Confidence 999999853 246788999999998887653 34445555666665543210 01122 233445
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHH----------------
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFL---------------- 223 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~---------------- 223 (362)
.||...+.... .+.+|... .+..+.+.++|...+. ......|+...-|.|++-|+..
T Consensus 135 ~pg~v~~~~~g--~~~~G~~~----~~~~~~l~~~l~~ag~-~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~ 207 (305)
T PRK05708 135 GDWRVVFAGHG--FTWLGDPR----NPTAPAWLDDLREAGI-PHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLE 207 (305)
T ss_pred CCCEEEEeceE--EEEEcCCC----CcchHHHHHHHHhcCC-CCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhc
Confidence 66765443221 24467442 2345667778876531 2234568999999999988721
Q ss_pred --HHHHHHHHHHHHHHHHhCCC
Q 017997 224 --AQRISSVNAMSALCEATGAN 243 (362)
Q Consensus 224 --~~~ia~~nE~~~l~~~~g~d 243 (362)
....+++.|+..++++.|++
T Consensus 208 ~~~~~~~l~~E~~~va~a~G~~ 229 (305)
T PRK05708 208 HAQEVAALCAELSELLRRCGQP 229 (305)
T ss_pred CHHHHHHHHHHHHHHHHHcCCC
Confidence 23457889999999999865
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-11 Score=112.40 Aligned_cols=153 Identities=12% Similarity=0.233 Sum_probs=101.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC----CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G----~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
|+|+|||+|.||.+++..|.++ | ++|++||+++++.+.+.+.. ..+..+.+..+++.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~--g~~~~~~v~v~~r~~~~~~~~~~~~-----------------~g~~~~~~~~~~~~ 61 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES--GAVKPSQLTITNRTPAKAYHIKERY-----------------PGIHVAKTIEEVIS 61 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCCCcceEEEECCCHHHHHHHHHHc-----------------CCeEEECCHHHHHH
Confidence 7999999999999999999988 6 47999999999887765410 12456677777789
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
++|+||+|||. ..+.++++++.++++++++|+..+. .-+.+.+.+.+... .+-+.|.
T Consensus 62 ~aDiVilav~p---------------~~~~~vl~~l~~~l~~~~~iis~~a--g~~~~~L~~~~~~~------~~r~~p~ 118 (273)
T PRK07680 62 QSDLIFICVKP---------------LDIYPLLQKLAPHLTDEHCLVSITS--PISVEQLETLVPCQ------VARIIPS 118 (273)
T ss_pred hCCEEEEecCH---------------HHHHHHHHHHHhhcCCCCEEEEECC--CCCHHHHHHHcCCC------EEEECCC
Confidence 99999999973 1357888889888888887775442 12455665554321 1223442
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEe
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT 206 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 206 (362)
.. ..+..+. ..++.|... +++..+.++++|+.++ ..+..
T Consensus 119 ~~--~~~~~G~---t~~~~g~~~---~~~~~~~~~~ll~~~G--~~~~i 157 (273)
T PRK07680 119 IT--NRALSGA---SLFTFGSRC---SEEDQQKLERLFSNIS--TPLVI 157 (273)
T ss_pred hH--HHHhhcc---EEEeeCCCC---CHHHHHHHHHHHHcCC--CEEEE
Confidence 11 1111111 123334221 3567789999999987 34444
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.9e-13 Score=114.01 Aligned_cols=211 Identities=18% Similarity=0.227 Sum_probs=146.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-----------CCCCCCChHHHHhhhcCCCEEEec
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-----------LPIYEPGLDGVVKQCRGKNLFFST 70 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~-----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (362)
.+|+|||.|.||+.+|+.-+.. |++|+++|.|++.+.+..++. .--.+..+++++.. ...+++.++
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s--g~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~-~l~ri~~~t 88 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS--GLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDD-TLDRIKTST 88 (298)
T ss_pred cceEEEcccccchhHHHHHHhc--CCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHH-HHHHHHHcC
Confidence 5799999999999999999999 999999999998877554321 00111224444432 124577889
Q ss_pred CHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--C
Q 017997 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--G 147 (362)
Q Consensus 71 d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g 147 (362)
|..++++++|+||.++-. +.|++ +..+++|...+++.+++ .++|++.. ..+...+..... |
T Consensus 89 nv~~~v~dadliiEAivE-----------n~diK--~~lF~~l~~~ak~~~il~tNTSSl~l---t~ia~~~~~~srf~G 152 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVE-----------NLDIK--RKLFKDLDKIAKSSTILATNTSSLSL---TDIASATQRPSRFAG 152 (298)
T ss_pred CHHHhhhhhHHHHHHHHH-----------hHHHH--HHHHHHHHhhcccceEEeecccceeH---HHHHhhccChhhhce
Confidence 999999999999999754 34554 78889999999888877 44554432 223333332222 5
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHH
Q 017997 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRI 227 (362)
Q Consensus 148 ~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~i 227 (362)
.+| ++|..+. +...|| -++++ ++++...+..+-+.++ +.++...|. ..++.|. +.+
T Consensus 153 lHF---fNPvPvM---------KLvEVi-r~~~T--S~eTf~~l~~f~k~~g-KttVackDt-----pGFIVNR---lLi 208 (298)
T KOG2304|consen 153 LHF---FNPVPVM---------KLVEVI-RTDDT--SDETFNALVDFGKAVG-KTTVACKDT-----PGFIVNR---LLI 208 (298)
T ss_pred eec---cCCchhH---------HHhhhh-cCCCC--CHHHHHHHHHHHHHhC-CCceeecCC-----CchhhhH---HHH
Confidence 555 5665442 222354 44444 6889999998888887 356655442 2467777 468
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcCCC
Q 017997 228 SSVNAMSALCEATGANVSQVAFAVGTDS 255 (362)
Q Consensus 228 a~~nE~~~l~~~~g~d~~~v~~~~~~~~ 255 (362)
-+++|..++.++..+..+++..++....
T Consensus 209 Pyl~ea~r~yerGdAskeDIDtaMklGa 236 (298)
T KOG2304|consen 209 PYLMEAIRMYERGDASKEDIDTAMKLGA 236 (298)
T ss_pred HHHHHHHHHHHhcCCcHhhHHHHHhccC
Confidence 9999999999999999999999997653
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.4e-11 Score=124.96 Aligned_cols=170 Identities=17% Similarity=0.187 Sum_probs=116.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G--~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
.||+|||+|.||.++|..|.+. | ++|++||+++++++.+.+.... ...+++..++++++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~--G~~~~V~~~d~~~~~~~~a~~~g~~-----------------~~~~~~~~~~~~~a 64 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER--GLAREVVAVDRRAKSLELAVSLGVI-----------------DRGEEDLAEAVSGA 64 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc--CCCCEEEEEECChhHHHHHHHCCCC-----------------CcccCCHHHHhcCC
Confidence 6899999999999999999998 6 5899999999988776542110 11235666778999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|+||+|+|. ..+.++++.+.++++++.+|++.+++.....+.+.+.+... ... ++..+|-..
T Consensus 65 DvVilavp~---------------~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~--~~r-~~~~hPm~G 126 (735)
T PRK14806 65 DVIVLAVPV---------------LAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGEL--PAG-FVPGHPIAG 126 (735)
T ss_pred CEEEECCCH---------------HHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhcccc--CCe-EEecCCcCc
Confidence 999999984 24678888999988888898888888777777766655431 112 456677442
Q ss_pred ccC----ccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhH
Q 017997 160 AEG----TAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS 211 (362)
Q Consensus 160 ~~g----~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 211 (362)
.++ .+..+++....+++-. ....+++..+.++++|+.++ .++...+...
T Consensus 127 ~~~~g~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~G--~~~~~~~~~~ 179 (735)
T PRK14806 127 SEKSGVHAANADLFRNHKVILTP-LAETDPAALARVDRLWRAVG--ADVLHMDVAH 179 (735)
T ss_pred CCcchhhhhhhHHhCCCeEEEEC-CCCCCHHHHHHHHHHHHHcC--CEEEEcCHHH
Confidence 222 1222334333333332 22234678899999999986 3555565443
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.2e-10 Score=113.30 Aligned_cols=165 Identities=14% Similarity=0.169 Sum_probs=105.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc-CCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-EAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-~aD 80 (362)
|||+|||+|.||.++|..|.+. |++|++||++... +...+- + +...++.++++. .+|
T Consensus 370 ~kIgIIGlG~mG~slA~~L~~~--G~~V~~~dr~~~~-~~a~~~------------------G-v~~~~~~~el~~~~aD 427 (667)
T PLN02712 370 LKIAIVGFGNFGQFLAKTMVKQ--GHTVLAYSRSDYS-DEAQKL------------------G-VSYFSDADDLCEEHPE 427 (667)
T ss_pred CEEEEEecCHHHHHHHHHHHHC--cCEEEEEECChHH-HHHHHc------------------C-CeEeCCHHHHHhcCCC
Confidence 7999999999999999999988 8999999998643 322220 1 334567777554 589
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh-hcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~-~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
+||+|||.. .+.++++++.. .++++++|++.+++.....+.+.+.+.. +.. ++..+|-+.
T Consensus 428 vVILavP~~---------------~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~---~~~-~v~~HPm~G 488 (667)
T PLN02712 428 VILLCTSIL---------------STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ---DFD-ILCTHPMFG 488 (667)
T ss_pred EEEECCChH---------------HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC---CCc-eEeeCCCCC
Confidence 999999842 34666777765 5788999998777653333444333322 223 466777554
Q ss_pred ccCc-----cccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHH
Q 017997 160 AEGT-----AIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAE 213 (362)
Q Consensus 160 ~~g~-----a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae 213 (362)
.+.. ....++.+ ++++++.. ..+.++.+.++|+.++ .+++.++++.-.
T Consensus 489 ~e~~~~G~~~~~~lf~~--~~v~~~~~--~~~~~~~l~~l~~~lG--a~vv~ms~eeHD 541 (667)
T PLN02712 489 PESGKNGWNNLAFVFDK--VRIGSDDR--RVSRCDSFLDIFAREG--CRMVEMSCAEHD 541 (667)
T ss_pred ccccccchhhhhhhccC--cEeCCCcc--hHHHHHHHHHHHHHcC--CEEEEeCHHHHH
Confidence 4321 12223333 23444321 3455667778999886 467777776643
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-10 Score=107.44 Aligned_cols=149 Identities=14% Similarity=0.099 Sum_probs=95.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCC----CeEEEEeCCH-HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G----~~V~~~d~~~-~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
||||+|||+|.||.+++..|.++ | ++|++|++++ ++.+.+.+. .+....+++..++
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~--g~~~~~~V~~~~r~~~~~~~~l~~~-----------------~~~~~~~~~~~e~ 61 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET--EVATPEEIILYSSSKNEHFNQLYDK-----------------YPTVELADNEAEI 61 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCCCcccEEEEeCCcHHHHHHHHHH-----------------cCCeEEeCCHHHH
Confidence 78999999999999999999988 6 7999999864 445554331 0123456677777
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc-HHHHHHHHHhccCCCceEEee
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT-AEAIEKILTHNSKGIKFQILS 154 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt-~~~l~~~l~~~~~g~~~~v~~ 154 (362)
++++|+||+|+|.. .+.++++++.++++++++|+. +..|. .+.+++.++.. . .+
T Consensus 62 ~~~aDvVilavpp~---------------~~~~vl~~l~~~l~~~~~ivS---~~aGi~~~~l~~~~~~~----~-vv-- 116 (277)
T PRK06928 62 FTKCDHSFICVPPL---------------AVLPLLKDCAPVLTPDRHVVS---IAAGVSLDDLLEITPGL----Q-VS-- 116 (277)
T ss_pred HhhCCEEEEecCHH---------------HHHHHHHHHHhhcCCCCEEEE---ECCCCCHHHHHHHcCCC----C-EE--
Confidence 89999999999832 467888889888887776653 22333 34565554321 1 11
Q ss_pred CCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 017997 155 NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (362)
Q Consensus 155 ~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~ 199 (362)
|..|-.+..- ......+..+ +..+++..+.++.+|+.++
T Consensus 117 ---R~MPN~~~~~-g~g~t~~~~~--~~~~~~~~~~v~~l~~~~G 155 (277)
T PRK06928 117 ---RLIPSLTSAV-GVGTSLVAHA--ETVNEANKSRLEETLSHFS 155 (277)
T ss_pred ---EEeCccHHHH-hhhcEEEecC--CCCCHHHHHHHHHHHHhCC
Confidence 2222221111 1111222222 2234677889999999986
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-10 Score=101.83 Aligned_cols=194 Identities=17% Similarity=0.174 Sum_probs=117.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC---Ce-EEEEeC-CHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS---IE-VAVVDI-SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G---~~-V~~~d~-~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
|||+|||+|.||.+++..|+++ | .+ ++++++ ++++.+.+.+. -++..+++.++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~--~~~~~~~i~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~ 64 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT--SKEYIEEIIVSNRSNVEKLDQLQAR------------------YNVSTTTDWKQHV 64 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCCCcCeEEEECCCCHHHHHHHHHH------------------cCcEEeCChHHHH
Confidence 4799999999999999999987 4 23 778887 57777776542 1244567788888
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-CccccHHHHHHHHHhccCCCceEEeeC
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSN 155 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (362)
+++|+||+|+|.. .+.++++++.++++ +++|+..+. ++ .+.+++.+.. +.. .+-.+
T Consensus 65 ~~~DiViiavp~~---------------~~~~v~~~l~~~~~-~~~vis~~~gi~---~~~l~~~~~~---~~~-v~r~~ 121 (245)
T PRK07634 65 TSVDTIVLAMPPS---------------AHEELLAELSPLLS-NQLVVTVAAGIG---PSYLEERLPK---GTP-VAWIM 121 (245)
T ss_pred hcCCEEEEecCHH---------------HHHHHHHHHHhhcc-CCEEEEECCCCC---HHHHHHHcCC---CCe-EEEEC
Confidence 9999999998842 35777888887766 456654322 32 2345444432 112 23456
Q ss_pred CcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHH---hHHHHHHHHHHHH
Q 017997 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAA---NAFLAQRISSVNA 232 (362)
Q Consensus 156 Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~---N~~~~~~ia~~nE 232 (362)
|....+-. ...+.+..+. ..+++..+.++++|+.++. .+... +.+ ...+. -+--+....++..
T Consensus 122 Pn~a~~v~-----~g~~~~~~~~---~~~~~~~~~v~~lf~~~G~--~~~~~---e~~-~~~~~a~~gs~pa~~~~~~~a 187 (245)
T PRK07634 122 PNTAAEIG-----KSISLYTMGQ---SVNETHKETLQLILKGIGT--SQLCT---EEE-VHQLTAVTGSAPAFLYYFAES 187 (245)
T ss_pred CcHHHHHh-----cCCeEEeeCC---CCCHHHHHHHHHHHHhCCC--EEEEC---HHH-cchHHhhhcchHHHHHHHHHH
Confidence 75432211 1111222222 2257888999999999973 44432 111 11111 0111123345556
Q ss_pred HHHHHHHhCCCHHHHHHHhc
Q 017997 233 MSALCEATGANVSQVAFAVG 252 (362)
Q Consensus 233 ~~~l~~~~g~d~~~v~~~~~ 252 (362)
+...+.+.|++.++-.+++.
T Consensus 188 ~~~~~~~~Gl~~~~a~~~~~ 207 (245)
T PRK07634 188 LIEATKSYGVDEETAKHLVI 207 (245)
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 77778888999888777665
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-10 Score=102.60 Aligned_cols=196 Identities=19% Similarity=0.250 Sum_probs=125.0
Q ss_pred CceEEEEcCChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKC--PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~--~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
||||+|||+|.||.+|+..|.+++ +..+|++.++++++.+.+.+.. +.. .+++..+++.+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~-----------------g~~-~~~~~~~~~~~ 62 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY-----------------GVV-TTTDNQEAVEE 62 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc-----------------CCc-ccCcHHHHHhh
Confidence 689999999999999999999982 1279999999999998655420 111 26777778899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEe-eCCc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQIL-SNPE 157 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~-~~Pe 157 (362)
+|+||+||+ |. .+.++++.+.+ ..++++|| |-...-+.+.+...+... .++ ..|.
T Consensus 63 advv~LavK-Pq--------------~~~~vl~~l~~-~~~~~lvI--SiaAGv~~~~l~~~l~~~------~vvR~MPN 118 (266)
T COG0345 63 ADVVFLAVK-PQ--------------DLEEVLSKLKP-LTKDKLVI--SIAAGVSIETLERLLGGL------RVVRVMPN 118 (266)
T ss_pred CCEEEEEeC-hH--------------hHHHHHHHhhc-ccCCCEEE--EEeCCCCHHHHHHHcCCC------ceEEeCCC
Confidence 999999998 42 35778888887 66777776 333333456676666521 111 1232
Q ss_pred ---ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHH
Q 017997 158 ---FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMS 234 (362)
Q Consensus 158 ---~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (362)
.++.|. ..+..+ ...+++..+.+..+|+.++ ..+.+..-.---++-+...+ =+....++..+.
T Consensus 119 t~a~vg~g~---------t~i~~~--~~~~~~~~~~v~~l~~~~G--~v~~v~E~~~da~TaisGSg-PAyv~~~iEal~ 184 (266)
T COG0345 119 TPALVGAGV---------TAISAN--ANVSEEDKAFVEALLSAVG--KVVEVEESLMDAVTALSGSG-PAYVFLFIEALA 184 (266)
T ss_pred hHHHHcCcc---------eeeecC--ccCCHHHHHHHHHHHHhcC--CeEEechHHhhHHHHHhcCC-HHHHHHHHHHHH
Confidence 222221 122222 2235777889999999997 34444321111122222211 122335677788
Q ss_pred HHHHHhCCCHHHHHHHhc
Q 017997 235 ALCEATGANVSQVAFAVG 252 (362)
Q Consensus 235 ~l~~~~g~d~~~v~~~~~ 252 (362)
..+.+.|++.++..+++.
T Consensus 185 ~agv~~Gl~~~~A~~l~~ 202 (266)
T COG0345 185 DAGVRLGLPREEARELAA 202 (266)
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 888899999888777654
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-09 Score=110.17 Aligned_cols=165 Identities=16% Similarity=0.127 Sum_probs=104.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh-cCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (362)
|+|+|||+|.||..+|..|.+. |++|++||++... +...+ -++..+++.++++ .++|
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~-~~A~~-------------------~Gv~~~~d~~e~~~~~aD 110 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ--GHTVLAHSRSDHS-LAARS-------------------LGVSFFLDPHDLCERHPD 110 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHH-HHHHH-------------------cCCEEeCCHHHHhhcCCC
Confidence 7999999999999999999998 8999999998554 22222 0134456777644 5799
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHH-hhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIA-DVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~-~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
+||+|||. ..+.++++++. ++++++++|++.+++.....+.+.+.+.+ +.. ++..+|-+.
T Consensus 111 vViLavP~---------------~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~---~~~-~v~~HPMaG 171 (667)
T PLN02712 111 VILLCTSI---------------ISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE---DFD-IICSHPMFG 171 (667)
T ss_pred EEEEcCCH---------------HHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC---CCe-EEeeCCcCC
Confidence 99999883 23577777775 56888999988766553333334333322 222 577788653
Q ss_pred ccCccccccCCCCeEEEe---cCCCcchHHHHHHHHHHHhccCCCCcEEeCChhH
Q 017997 160 AEGTAIQDLFNPDRVLIG---GRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS 211 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 211 (362)
.+ ....++.....++.+ +. +....+..+.+.++|+.++ .++..++++.
T Consensus 172 ~e-~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~lG--a~v~~ms~ee 222 (667)
T PLN02712 172 PQ-SAKHGWDGLRFVYEKVRIGN-EELRVSRCKSFLEVFEREG--CKMVEMSCTE 222 (667)
T ss_pred Cc-cccchhccCcEEEeeccCCC-ccccHHHHHHHHHHHHHcC--CEEEEeCHHH
Confidence 32 111111222222221 22 1112345677789999886 4677777665
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.1e-11 Score=103.31 Aligned_cols=209 Identities=15% Similarity=0.135 Sum_probs=136.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCC---------EEEecC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKN---------LFFSTD 71 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~---------l~~t~d 71 (362)
-||+|+|.|.+|.++|..||.. ||+|..||+.++.+....+.. +..+..+-++ ...|+ +..|++
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~--GyqVqlYDI~e~Ql~~ALen~----~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS--GYQVQLYDILEKQLQTALENV----EKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc--CceEEEeeccHHHHHHHHHHH----HHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 4899999999999999999999 999999999987765322110 0011111111 11222 346789
Q ss_pred HHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccH-HHHHHHHHhccCCCc
Q 017997 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTA-EAIEKILTHNSKGIK 149 (362)
Q Consensus 72 ~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~-~~l~~~l~~~~~g~~ 149 (362)
+.+++++|=.|-.|+|... ++ -++..+++.+.+.+.+|+ ..+||++|... +.+. .+ .
T Consensus 78 l~E~vk~Ai~iQEcvpE~L-----------~l--kk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~---~k-----~ 136 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDL-----------NL--KKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLI---NK-----E 136 (313)
T ss_pred HHHHHhhhhhHHhhchHhh-----------HH--HHHHHHHHHHhcCCceEEeccccccChHHHhhhhh---hh-----h
Confidence 9999999999999998532 23 367778888888777666 33455776532 2221 11 1
Q ss_pred eEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHH
Q 017997 150 FQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISS 229 (362)
Q Consensus 150 ~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~ 229 (362)
-+++.+|.. |-- +.....++ -.+.+ +++++++.+.+.++++. .++... .|...++-|. ...|.
T Consensus 137 q~lvaHPvN--PPy----fiPLvElV-PaPwT--sp~tVdrt~~lM~sigq-~pV~l~----rei~Gf~lnr---iq~Ai 199 (313)
T KOG2305|consen 137 QCLVAHPVN--PPY----FIPLVELV-PAPWT--SPDTVDRTRALMRSIGQ-EPVTLK----REILGFALNR---IQYAI 199 (313)
T ss_pred heeEecCCC--CCc----ccchheec-cCCCC--ChhHHHHHHHHHHHhCC-CCcccc----cccccceecc---ccHHH
Confidence 256677732 211 01112233 33333 58899999999999874 455433 3444556666 57799
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCC
Q 017997 230 VNAMSALCEATGANVSQVAFAVGTD 254 (362)
Q Consensus 230 ~nE~~~l~~~~g~d~~~v~~~~~~~ 254 (362)
.||-.++....+++..++...++..
T Consensus 200 lne~wrLvasGil~v~dvD~VmS~G 224 (313)
T KOG2305|consen 200 LNETWRLVASGILNVNDVDAVMSAG 224 (313)
T ss_pred HHHHHHHHHccCcchhhHHHHHhcC
Confidence 9999999999999988888888653
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=105.94 Aligned_cols=207 Identities=14% Similarity=0.185 Sum_probs=148.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh---hcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH---VSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a---~~~ 78 (362)
+.|+.||++.||..++.+.+++ ||.|.+|+|...+++.+.+.... ...+.-..++++. ++.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~--Gf~v~~yNRT~skvD~flaneak--------------~~~i~ga~S~ed~v~klk~ 70 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK--GFTVCAYNRTTSKVDEFLANEAK--------------GTKIIGAYSLEDFVSKLKK 70 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc--CceEEEeccchHhHHHHHHHhhc--------------CCcccCCCCHHHHHHhcCC
Confidence 5799999999999999999999 99999999999999876542111 0011112233332 456
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-CccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
.-.|++-|.... .+...++++.++|.++++||+-.. -.+.|.++..+. .+. |. .+|..+-+
T Consensus 71 PR~iillvkAG~--------------pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el-~k~--Gi-lfvG~GVS 132 (487)
T KOG2653|consen 71 PRVIILLVKAGA--------------PVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCREL-AKK--GI-LFVGSGVS 132 (487)
T ss_pred CcEEEEEeeCCC--------------cHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHH-Hhc--Cc-EEEecCcc
Confidence 778888876432 356788999999999999998665 355666665543 333 22 23444333
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC----CCc--EEeCChhHHHHHHHHHhHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP----EDR--ILTTNLWSAELSKLAANAFLAQRISSVN 231 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~----~~~--~~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (362)
-..+|. ++.|.++.||. +++...++.+|..+.. ..+ .++++-+++.++|+++|..-.--++++.
T Consensus 133 GGEEGA-----R~GPSlMpGg~-----~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~ 202 (487)
T KOG2653|consen 133 GGEEGA-----RYGPSLMPGGS-----KEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLIC 202 (487)
T ss_pred Cccccc-----ccCCccCCCCC-----hHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHH
Confidence 333333 45566888987 7888999999987631 122 3467778999999999999888999999
Q ss_pred HHHHHHHH-hCCCHHHHHHHhc
Q 017997 232 AMSALCEA-TGANVSQVAFAVG 252 (362)
Q Consensus 232 E~~~l~~~-~g~d~~~v~~~~~ 252 (362)
|...+.+. +|.+-+++.+...
T Consensus 203 EaY~vlk~~~gls~~eia~vF~ 224 (487)
T KOG2653|consen 203 EAYDVLKSVLGLSNDEIAEVFD 224 (487)
T ss_pred HHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999 7888888777765
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.1e-10 Score=98.98 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=70.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCC-CCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLP-IYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~-~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+||| +|.||.++|..|+++ ||+|+++++++++++.+++.... +...+. ..++..+ +..++++++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~--G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~--------~~~~~~~-~~~ea~~~a 69 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA--GNKIIIGSRDLEKAEEAAAKALEELGHGGS--------DIKVTGA-DNAEAAKRA 69 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC--CCEEEEEEcCHHHHHHHHHHHHhhccccCC--------CceEEEe-ChHHHHhcC
Confidence 7999997 899999999999999 99999999999998877642110 000000 0112333 445678999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
|+||+|||.+ .+.++++++.+.++. ++|+..+.
T Consensus 70 DvVilavp~~---------------~~~~~l~~l~~~l~~-~vvI~~~n 102 (219)
T TIGR01915 70 DVVILAVPWD---------------HVLKTLESLRDELSG-KLVISPVV 102 (219)
T ss_pred CEEEEECCHH---------------HHHHHHHHHHHhccC-CEEEEecc
Confidence 9999999842 356777777776654 66665443
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.5e-11 Score=93.23 Aligned_cols=87 Identities=24% Similarity=0.281 Sum_probs=68.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCC---CeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec-CHHhhhc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPS---IEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKHVS 77 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G---~~V~~~-d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~ 77 (362)
||+|||.|.||..++..|.++ | ++|+.+ ++++++.+++.+.. ...+++ +..++++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~--g~~~~~v~~~~~r~~~~~~~~~~~~------------------~~~~~~~~~~~~~~ 60 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS--GIKPHEVIIVSSRSPEKAAELAKEY------------------GVQATADDNEEAAQ 60 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT--TS-GGEEEEEEESSHHHHHHHHHHC------------------TTEEESEEHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCCceeEEeeccCcHHHHHHHHHhh------------------ccccccCChHHhhc
Confidence 799999999999999999999 8 999955 99999999886521 133444 6788899
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
++|+||+|||. . .+.++++++ +...++++||.
T Consensus 61 ~advvilav~p-~--------------~~~~v~~~i-~~~~~~~~vis 92 (96)
T PF03807_consen 61 EADVVILAVKP-Q--------------QLPEVLSEI-PHLLKGKLVIS 92 (96)
T ss_dssp HTSEEEE-S-G-G--------------GHHHHHHHH-HHHHTTSEEEE
T ss_pred cCCEEEEEECH-H--------------HHHHHHHHH-hhccCCCEEEE
Confidence 99999999983 2 357788888 66778888874
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-10 Score=105.42 Aligned_cols=201 Identities=19% Similarity=0.163 Sum_probs=133.2
Q ss_pred hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEEEEeccCCC
Q 017997 11 YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPT 90 (362)
Q Consensus 11 ~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~vptp~ 90 (362)
.||+.+|..|+++ ||+|++++|+ ++++.+++.+..+..++.+ .. .....+++++++ ...+|+||+||++.
T Consensus 1 aiG~~~a~~L~~~--G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~-~~----~~~~~~~~~~~~-~~~~D~iiv~vKs~- 70 (293)
T TIGR00745 1 AVGSLYGAYLARA--GHDVTLLARG-EQLEALNQEGLRIVSLGGE-FQ----FRPVSAATSPEE-LPPADLVIITVKAY- 70 (293)
T ss_pred CchHHHHHHHHhC--CCcEEEEecH-HHHHHHHHCCcEEEecCCc-EE----EcccccccChhh-cCCCCEEEEeccch-
Confidence 3799999999999 9999999997 7888898765555433211 00 002345566666 77999999999853
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCC-cccccCccccccC
Q 017997 91 KTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP-EFLAEGTAIQDLF 169 (362)
Q Consensus 91 ~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P-e~~~~g~a~~~~~ 169 (362)
++.++++.+.+++.++++|+. .....+..+.+.+.+.+.. .-..+.+.+ .+..||...+.
T Consensus 71 --------------~~~~~l~~l~~~l~~~~~iv~-~qNG~g~~~~l~~~~~~~~--v~~g~~~~~~~~~~pg~v~~~-- 131 (293)
T TIGR00745 71 --------------QTEEAAALLLPLIGKNTKVLF-LQNGLGHEERLRELLPARR--ILGGVVTHGAVREEPGVVHHA-- 131 (293)
T ss_pred --------------hHHHHHHHhHhhcCCCCEEEE-ccCCCCCHHHHHHHhCccC--EEEEEEEEeeEEcCCcEEEEe--
Confidence 357888999999988887764 3445556666666554321 011122222 34456654333
Q ss_pred CCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhH---------------------HHHHHHH
Q 017997 170 NPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA---------------------FLAQRIS 228 (362)
Q Consensus 170 ~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~---------------------~~~~~ia 228 (362)
...++.+|..+.. .+..+.+.++|+..+. ......|+....|.|++.|+ .+.+..+
T Consensus 132 ~~~~~~iG~~~~~--~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~ 208 (293)
T TIGR00745 132 GLGATKIGDYVGE--NEAVEALAELLNEAGI-PAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRR 208 (293)
T ss_pred ccccEEEecCCCc--hHHHHHHHHHHHhCCC-CCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHH
Confidence 2335677866431 2445677777776542 23456799999999999776 2456668
Q ss_pred HHHHHHHHHHHhCCC
Q 017997 229 SVNAMSALCEATGAN 243 (362)
Q Consensus 229 ~~nE~~~l~~~~g~d 243 (362)
.++|+..++++.|++
T Consensus 209 ~~~E~~~v~~a~G~~ 223 (293)
T TIGR00745 209 LMDEVVRVARAEGVD 223 (293)
T ss_pred HHHHHHHHHHhCCCC
Confidence 899999999999875
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.5e-10 Score=102.22 Aligned_cols=193 Identities=12% Similarity=0.040 Sum_probs=114.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCC--CCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCP--SIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~--G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|.||.+++..|.+++. ..+++++|+++++. ....+.+..+++.++
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~ 58 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-------------------------PFVYLQSNEELAKTC 58 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-------------------------CeEEeCChHHHHHhC
Confidence 799999999999999999998720 13599999876431 022345666667899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|+||+|+|. ..+.++++++.++++++.+|.+.+.+...+ +...+... .. .+ |.
T Consensus 59 D~Vilavkp---------------~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~---l~~~~~~~---~~-vv-----r~ 111 (260)
T PTZ00431 59 DIIVLAVKP---------------DLAGKVLLEIKPYLGSKLLISICGGLNLKT---LEEMVGVE---AK-IV-----RV 111 (260)
T ss_pred CEEEEEeCH---------------HHHHHHHHHHHhhccCCEEEEEeCCccHHH---HHHHcCCC---Ce-EE-----EE
Confidence 999999873 246888889988877665666555555433 33333221 11 12 23
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (362)
.|++... +.+.. .++... ...+++..+.++.+|+.++ ..+.+..-.---+.-+ .-+--+....++..+...+.+
T Consensus 112 mPn~p~~-~g~g~-t~i~~~-~~~~~~~~~~v~~l~~~~G--~~~~v~E~~~d~~ta~-~gsgPA~~~~~~~al~~~~v~ 185 (260)
T PTZ00431 112 MPNTPSL-VGQGS-LVFCAN-NNVDSTDKKKVIDIFSACG--IIQEIKEKDMDIATAI-SGCGPAYVFLFIESLIDAGVK 185 (260)
T ss_pred CCCchhH-hccee-EEEEeC-CCCCHHHHHHHHHHHHhCC--cEEEEChHHcchhhhh-cCCHHHHHHHHHHHHHHHHHH
Confidence 3333311 11221 223322 2234677899999999986 3444431110001111 111122334566667777888
Q ss_pred hCCCHHHHHHHhc
Q 017997 240 TGANVSQVAFAVG 252 (362)
Q Consensus 240 ~g~d~~~v~~~~~ 252 (362)
.|++.++..+.+.
T Consensus 186 ~Gl~~~~a~~l~~ 198 (260)
T PTZ00431 186 NGLNRDVSKNLVL 198 (260)
T ss_pred cCCCHHHHHHHHH
Confidence 8999888777654
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.6e-09 Score=97.16 Aligned_cols=178 Identities=19% Similarity=0.198 Sum_probs=110.4
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEEEEeccCCCCCCCC
Q 017997 16 TMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGL 95 (362)
Q Consensus 16 lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~vptp~~~~g~ 95 (362)
+|..|.++++.++|++||++++.++...+.+.. -...++ .++++++|+||+|||.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~-----------------~~~~~~-~~~~~~~DlvvlavP~------- 55 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGII-----------------DEASTD-IEAVEDADLVVLAVPV------- 55 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSS-----------------SEEESH-HHHGGCCSEEEE-S-H-------
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCe-----------------eeccCC-HhHhcCCCEEEEcCCH-------
Confidence 578888884458999999999998876432110 122333 4569999999999873
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEee----CCcccccCccccccCCC
Q 017997 96 GAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILS----NPEFLAEGTAIQDLFNP 171 (362)
Q Consensus 96 ~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~----~Pe~~~~g~a~~~~~~~ 171 (362)
+.+.++++++.++++++++|++.+++.....+.+.+.+.. +.. ++.. +||..++..+..+++..
T Consensus 56 --------~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~---~~~-~v~~HPM~G~e~~G~~~a~~~lf~g 123 (258)
T PF02153_consen 56 --------SAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPE---GVR-FVGGHPMAGPEKSGPEAADADLFEG 123 (258)
T ss_dssp --------HHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTS---SGE-EEEEEESCSTSSSSGGG-TTTTTTT
T ss_pred --------HHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCc---ccc-eeecCCCCCCccccchhhcccccCC
Confidence 3578899999999999999998777765555555555442 122 3444 55766676777777777
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhH-HHHHHHHHhHHHHHHHHHHHHH
Q 017997 172 DRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS-AELSKLAANAFLAQRISSVNAM 233 (362)
Q Consensus 172 ~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-ae~~Kl~~N~~~~~~ia~~nE~ 233 (362)
..+++... ...+++.++.+.++++.++ ..+..++++. -+++-+++-.-..+..++++.+
T Consensus 124 ~~~il~p~-~~~~~~~~~~~~~l~~~~G--a~~~~~~~eeHD~~~A~vshlpH~~a~al~~~~ 183 (258)
T PF02153_consen 124 RNWILCPG-EDTDPEALELVEELWEALG--ARVVEMDAEEHDRIMAYVSHLPHLLASALANTL 183 (258)
T ss_dssp SEEEEEEC-TTS-HHHHHHHHHHHHHCT---EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CeEEEeCC-CCChHHHHHHHHHHHHHCC--CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666532 3335688999999999986 4566667653 3444555555445555555543
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-10 Score=106.08 Aligned_cols=118 Identities=22% Similarity=0.320 Sum_probs=82.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|+||+.+|..++.. |+ +|+++|++++..+... .+++++.... ....++++++|+++ +++||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~--g~~~VvlvDi~~~l~~g~a---~d~~~~~~~~----~~~~~i~~t~d~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK--ELADLVLLDVVEGIPQGKA---LDMYEASPVG----GFDTKVTGTNNYAD-TANSD 71 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCCChhHHHH---Hhhhhhhhcc----CCCcEEEecCCHHH-hCCCC
Confidence 7999999999999999999998 65 8999999766433111 1222322211 11356888899987 89999
Q ss_pred EEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
+||+|+++|...++ ++ ..|++.++++.++|.++.+ +.+|++- |.|....
T Consensus 72 iVIitag~p~~~~~---sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iIv~-tNP~di~ 124 (305)
T TIGR01763 72 IVVITAGLPRKPGM---SREDLLSMNAGIVREVTGRIMEHSP-NPIIVVV-SNPLDAM 124 (305)
T ss_pred EEEEcCCCCCCcCC---CHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe-cCcHHHH
Confidence 99999999876521 10 1577888999999999864 4444432 4555543
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-09 Score=98.27 Aligned_cols=207 Identities=17% Similarity=0.235 Sum_probs=137.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-----eEEEEeCCH------HHH-HHHHcC-CCCCCCCChHHHHhhhcCCCEEE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-----EVAVVDISV------SRI-NAWNSD-QLPIYEPGLDGVVKQCRGKNLFF 68 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-----~V~~~d~~~------~~~-~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~ 68 (362)
.||+|||.|+||+++|+.+.++..++ +|..|-..+ +++ +-+|+. ++..|-|+.+ ...++.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~------lP~NvvA 95 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIK------LPENVVA 95 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCcc------CCCCeEe
Confidence 48999999999999999998763223 466664322 233 335543 3445666643 4667999
Q ss_pred ecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-Cc---cc-cHHHHHHHHHh
Q 017997 69 STDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VP---VK-TAEAIEKILTH 143 (362)
Q Consensus 69 t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~---~g-t~~~l~~~l~~ 143 (362)
++|+.+++.+||+++..+|.. ++.+++++|..+++++..-|..+. +. +| ..+.+.+++.+
T Consensus 96 v~dl~ea~~dADilvf~vPhQ---------------f~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~ 160 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVPHQ---------------FIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHR 160 (372)
T ss_pred cchHHHHhccCCEEEEeCChh---------------hHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHH
Confidence 999999999999999999842 467899999999999988776555 33 33 23445666665
Q ss_pred ccCCCceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcE-EeCChhHHHHHHHH----
Q 017997 144 NSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRI-LTTNLWSAELSKLA---- 218 (362)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ae~~Kl~---- 218 (362)
.. |....++++|..+.+-.. +.+. .-.||+.+. .+.-..++.+|++-. .++ .+.|..+.|++.-+
T Consensus 161 ~l-gI~~~vL~GaNiA~EVa~--~~f~--e~tIg~~~~---~~~~~~l~~lf~~p~--FrV~~~~D~~~VEi~GaLKNVv 230 (372)
T KOG2711|consen 161 AL-GIPCSVLMGANIASEVAN--EKFC--ETTIGYKDK---KEAGILLKKLFRTPY--FRVVVVEDADGVEICGALKNVV 230 (372)
T ss_pred Hh-CCCceeecCCchHHHHHh--cccc--ceeEeccch---hhcchHHHHHhCCCc--eEEEEeccchHhHHhhhHHhHH
Confidence 54 345567888877655332 2222 334677642 333345888888743 334 45677776665533
Q ss_pred -------------HhHHHHHHHHHHHHHHHHHHH
Q 017997 219 -------------ANAFLAQRISSVNAMSALCEA 239 (362)
Q Consensus 219 -------------~N~~~~~~ia~~nE~~~l~~~ 239 (362)
+|+..++.-...-||..|++.
T Consensus 231 AiaaGfvdGL~~g~NTkaAi~r~Gl~Em~~F~~~ 264 (372)
T KOG2711|consen 231 AIAAGFVDGLGLGNNTKAAIIRLGLLEMIKFATH 264 (372)
T ss_pred HHhhhhhhhccCCcchHHHHHHhhHHHHHHHHHH
Confidence 566667777777788888776
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-10 Score=92.68 Aligned_cols=92 Identities=28% Similarity=0.266 Sum_probs=64.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|.+|..++..|.++ ||+|.++ .++++..+.+.+.. +.. ...++.+.+.++|
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a--g~~v~~v~srs~~sa~~a~~~~-----------------~~~-~~~~~~~~~~~aD 70 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA--GHEVVGVYSRSPASAERAAAFI-----------------GAG-AILDLEEILRDAD 70 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT--TSEEEEESSCHH-HHHHHHC-------------------TT------TTGGGCC-S
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCccccccccccc-----------------ccc-cccccccccccCC
Confidence 6999999999999999999999 9999887 67777777666521 112 2234566789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh--cCCCCEEEEeeC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV--SKSDKIVVEKST 128 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~--l~~~~iVv~~ST 128 (362)
++||+||.. .+.++.++|... .+++++|+-+|-
T Consensus 71 lv~iavpDd---------------aI~~va~~La~~~~~~~g~iVvHtSG 105 (127)
T PF10727_consen 71 LVFIAVPDD---------------AIAEVAEQLAQYGAWRPGQIVVHTSG 105 (127)
T ss_dssp EEEE-S-CC---------------HHHHHHHHHHCC--S-TT-EEEES-S
T ss_pred EEEEEechH---------------HHHHHHHHHHHhccCCCCcEEEECCC
Confidence 999999842 578899999987 789999998875
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=93.04 Aligned_cols=165 Identities=20% Similarity=0.168 Sum_probs=99.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~-~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||+|+|+|.|.+|..+|.+|++. ||+|+.-.+ .+++.+...+..- ..++.. +.++|++.+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a--g~eV~igs~r~~~~~~a~a~~l~----------------~~i~~~-~~~dA~~~a 61 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA--GHEVIIGSSRGPKALAAAAAALG----------------PLITGG-SNEDAAALA 61 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC--CCeEEEecCCChhHHHHHHHhhc----------------cccccC-ChHHHHhcC
Confidence 89999999999999999999999 999998854 4555555544211 123333 446679999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcc---c------------c-HHHHHHHHHh
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPV---K------------T-AEAIEKILTH 143 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~---g------------t-~~~l~~~l~~ 143 (362)
|+||++||-+ ++.++++++...+. +++||+ .|+|. + + ++.+++.++.
T Consensus 62 DVVvLAVP~~---------------a~~~v~~~l~~~~~-~KIvID-~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~ 124 (211)
T COG2085 62 DVVVLAVPFE---------------AIPDVLAELRDALG-GKIVID-ATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPG 124 (211)
T ss_pred CEEEEeccHH---------------HHHhHHHHHHHHhC-CeEEEe-cCCCccccCCccccccCCCCCcHHHHHHHHCCC
Confidence 9999999843 45677788887765 777765 55651 1 1 1233333332
Q ss_pred ccCCCceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChh
Q 017997 144 NSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLW 210 (362)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 210 (362)
...-..|.- .....+...... + .+. -+.+.++ +.++.+.+.+|-+.++ ..++..+...
T Consensus 125 akVVkAFn~-i~a~~l~~~~~~-~-~~~-~v~vagD----D~~Ak~~v~~L~~~iG-~~~ld~G~L~ 182 (211)
T COG2085 125 AKVVKAFNT-IPAAVLADLAKP-G-GRR-DVLVAGD----DAEAKAVVAELAEDIG-FRPLDAGPLE 182 (211)
T ss_pred cchhhhhcc-cCHHHhccCCCc-C-Cce-eEEEecC----cHHHHHHHHHHHHhcC-cceeeccccc
Confidence 210011211 111222222111 1 122 2445556 3788999999999885 3456555543
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.9e-08 Score=86.41 Aligned_cols=248 Identities=15% Similarity=0.088 Sum_probs=143.6
Q ss_pred CceEEEEcCCh--------------------hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh
Q 017997 1 MVKICCIGAGY--------------------VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60 (362)
Q Consensus 1 ~mkI~VIGlG~--------------------~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~ 60 (362)
||||+|.|+|+ -|..||..||++ ||+|++.|.|.+-.+. +..+.
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA--GHDVVLaePn~d~~dd--------------~~w~~ 64 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA--GHDVVLAEPNRDIMDD--------------EHWKR 64 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc--CCcEEeecCCccccCH--------------HHHHH
Confidence 69999999995 477899999999 9999999987543221 11111
Q ss_pred hcCCCEEEecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH-HHHHH
Q 017997 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA-EAIEK 139 (362)
Q Consensus 61 ~~~~~l~~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~-~~l~~ 139 (362)
+.....+.++|-.++++++++.++- ||+.. ....+.+.|.++++.+.+|.++.|++|-.. ..+..
T Consensus 65 vedAGV~vv~dD~eaa~~~Ei~VLF--TPFGk------------~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~ 130 (340)
T COG4007 65 VEDAGVEVVSDDAEAAEHGEIHVLF--TPFGK------------ATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEG 130 (340)
T ss_pred HHhcCcEEecCchhhhhcceEEEEe--cccch------------hhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhh
Confidence 1123477777777789999999999 45542 346788999999999999999888877543 34444
Q ss_pred HHHhccCCCceEEe-eCCcccccCccccccCCCCeEEEecCCC----cchHHHHHHHHHHHhccCCCCcEEeCChhHHHH
Q 017997 140 ILTHNSKGIKFQIL-SNPEFLAEGTAIQDLFNPDRVLIGGRET----PEGQKAVKALKDVYAHWVPEDRILTTNLWSAEL 214 (362)
Q Consensus 140 ~l~~~~~g~~~~v~-~~Pe~~~~g~a~~~~~~~~~viiG~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~ 214 (362)
.|+-.. .++.+. ++|- ..||...++ .+++|+..+ -.+++..++..++.++.+. ..+ +.++.....
T Consensus 131 ~Lr~kR--~dVGvssmHPA-gvPGtp~h~-----~yviagr~t~g~elATeEQi~r~velaes~Gk-~~y-v~padv~s~ 200 (340)
T COG4007 131 ELRTKR--EDVGVSSMHPA-GVPGTPQHG-----HYVIAGRSTEGKELATEEQIERCVELAESTGK-EVY-VLPADVVSA 200 (340)
T ss_pred hhcCch--hhcCccccCCC-CCCCCCCCc-----eEEEeccCCCceeeccHHHHHHHHHHHHhcCC-ceE-ecCHHHHHH
Confidence 443221 233333 4664 457775443 456676543 2347788999999999873 444 333322112
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHhcCC-CCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCc
Q 017997 215 SKLAANAFLAQRISSVNAMSALCEA-TGANVSQVAFAVGTD-SRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLP 290 (362)
Q Consensus 215 ~Kl~~N~~~~~~ia~~nE~~~l~~~-~g~d~~~v~~~~~~~-~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~ 290 (362)
+.=+.-...+..++.+-+......+ .|+..+-+-+-+-.. ..+ ..+--..|++|-.-.-|+.+|++.++...+.
T Consensus 201 VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eMIekQilmtLqTm--AsLvetsGi~g~~~~~n~elL~rSa~nM~l~ 276 (340)
T COG4007 201 VADMGVLVTAVALSGVLDYYYVGTQIIGAPKEMIEKQILMTLQTM--ASLVETSGIDGMLKALNPELLLRSARNMHLL 276 (340)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH--HHHHHhcchhHHHHhcCHHHHHHHhhhcccc
Confidence 1112222233334444444444443 344433222211100 000 0111112455443334788888877765443
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-08 Score=94.07 Aligned_cols=151 Identities=11% Similarity=0.071 Sum_probs=95.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||.++|..|... |++|++++++.++.....+. ..+.. .+.+++++.||+
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~s--G~~Vvv~~r~~~~s~~~A~~------------------~G~~~-~s~~eaa~~ADV 76 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDS--GVDVVVGLREGSKSWKKAEA------------------DGFEV-LTVAEAAKWADV 76 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHC--CCEEEEEECCchhhHHHHHH------------------CCCee-CCHHHHHhcCCE
Confidence 5899999999999999999998 99999988875443322210 11333 367888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~-~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
|+++||.. ...+++ +++.++++++++|+..+-+.....+ ....+ +.++ +...|. .
T Consensus 77 VvLaVPd~---------------~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~---~~p~~---~~~V-i~vaPn--~ 132 (330)
T PRK05479 77 IMILLPDE---------------VQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQ---IVPPA---DVDV-IMVAPK--G 132 (330)
T ss_pred EEEcCCHH---------------HHHHHHHHHHHhcCCCCCEEEECCCCChhhce---eccCC---CCcE-EEeCCC--C
Confidence 99999832 235666 7788999999988765554433221 11111 2333 334564 3
Q ss_pred cCccccccC----CCCeEE-EecCCCcchHHHHHHHHHHHhccCC
Q 017997 161 EGTAIQDLF----NPDRVL-IGGRETPEGQKAVKALKDVYAHWVP 200 (362)
Q Consensus 161 ~g~a~~~~~----~~~~vi-iG~~~~~~~~~~~~~~~~l~~~~~~ 200 (362)
|+..+...+ ..+.++ +..+ .+.++.+.+..++..++.
T Consensus 133 Pg~~vr~~~~~G~Gv~~l~av~~d---~t~~a~~~a~~l~~aiG~ 174 (330)
T PRK05479 133 PGHLVRREYEEGGGVPCLIAVHQD---ASGNAKDLALAYAKGIGG 174 (330)
T ss_pred CchhhhhhhhcCCCceEEEEecCC---CCHHHHHHHHHHHHHcCC
Confidence 444222221 112233 2221 246788999999999873
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.5e-09 Score=97.82 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=77.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|+|+|||+|.||.++|..|... |++|++||++++.... .+.+++++++++++||+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~--G~~V~~~d~~~~~~~~-----------------------~~~~~~~l~ell~~aDi 201 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF--GATITAYDAYPNKDLD-----------------------FLTYKDSVKEAIKDADI 201 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCChhHhhh-----------------------hhhccCCHHHHHhcCCE
Confidence 6899999999999999999988 9999999998754211 12234578888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++|+|... +...+ ..+.+.+.++++.++|+.|--..=..+.+.+.|++.
T Consensus 202 Vil~lP~t~-----------~t~~l--i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g 251 (330)
T PRK12480 202 ISLHVPANK-----------ESYHL--FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDG 251 (330)
T ss_pred EEEeCCCcH-----------HHHHH--HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcC
Confidence 999998532 22222 346777889999999987653333345666666653
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-09 Score=99.72 Aligned_cols=120 Identities=24% Similarity=0.289 Sum_probs=78.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|||+|+||..+|..++.. |+ +|+++|+++++.+..... +.+... ......+++.++|+++ +++|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~--~~~ev~L~D~~~~~~~~~~~d---l~~~~~----~~~~~~~i~~~~d~~~-~~~a 71 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK--ELGDVVLFDIVEGVPQGKALD---IAEAAP----VEGFDTKITGTNDYED-IAGS 71 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEEECCCchhHHHHHH---HHhhhh----hcCCCcEEEeCCCHHH-HCCC
Confidence 78999999999999999999988 55 999999998876543210 101000 0001245777788864 8999
Q ss_pred cEEEEeccCCCCCCCCC--CCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 80 DIVFVSVNTPTKTQGLG--AGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 80 DvVii~vptp~~~~g~~--~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|+||+++..|..... . +.-.-++..+++.++.+.++.+++.+|+. |.|...
T Consensus 72 DiVii~~~~p~~~~~-~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~--tNP~d~ 124 (307)
T PRK06223 72 DVVVITAGVPRKPGM-SRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV--TNPVDA 124 (307)
T ss_pred CEEEECCCCCCCcCC-CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHH
Confidence 999999988764311 0 00013446678888888888755444443 444443
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.8e-09 Score=99.45 Aligned_cols=121 Identities=26% Similarity=0.398 Sum_probs=84.1
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
|||+|+|+ |++|..+|..|+.. |+ +|+++|+++ +.++++....++.+. +...-...++++++|+++ +++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~--g~~~~v~lvd~~~-~~~~l~~~~~dl~d~----~~~~~~~~~i~~~~d~~~-l~~ 72 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE--DVVKEINLISRPK-SLEKLKGLRLDIYDA----LAAAGIDAEIKISSDLSD-VAG 72 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCCCEEEEEECcc-cccccccccchhhhc----hhccCCCcEEEECCCHHH-hCC
Confidence 79999998 99999999999998 65 599999954 444454444443311 000000124666778765 999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~-----~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
||+||+|+.+|...+. ...|+ +.++++.+.|.++.+...+|+.++++++.|.
T Consensus 73 aDiViitag~p~~~~~----~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~ 129 (309)
T cd05294 73 SDIVIITAGVPRKEGM----SRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTY 129 (309)
T ss_pred CCEEEEecCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHH
Confidence 9999999998865421 12444 7788888899888766666677777777663
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.9e-08 Score=93.52 Aligned_cols=109 Identities=13% Similarity=0.145 Sum_probs=79.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|+|+|||+|.||..+|..|... |.+|++||++....+.... ..++...+++++++.||+
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f--G~~V~~~dr~~~~~~~~~~-------------------~g~~~~~~l~ell~~aDv 251 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF--DVKLHYTDRHRLPEEVEQE-------------------LGLTYHVSFDSLVSVCDV 251 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCCchhhHhh-------------------cCceecCCHHHHhhcCCE
Confidence 6899999999999999999887 9999999987532221111 123444578888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|.. +++..+.. ++....++++.++|+.+.-..-..+.|.+.|++.
T Consensus 252 V~l~lPlt-----------~~T~~li~--~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 301 (385)
T PRK07574 252 VTIHCPLH-----------PETEHLFD--ADVLSRMKRGSYLVNTARGKIVDRDAVVRALESG 301 (385)
T ss_pred EEEcCCCC-----------HHHHHHhC--HHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhC
Confidence 99998842 22333322 4667778999999998876665667777777764
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.1e-08 Score=92.71 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=78.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..|... |++|++||+++..... .. ..... .++++++++||+
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~-~~-------------------~~~~~-~~l~ell~~aDi 207 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGF--GMRILYYSRTRKPEAE-KE-------------------LGAEY-RPLEELLRESDF 207 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCChhhH-HH-------------------cCCEe-cCHHHHHhhCCE
Confidence 4899999999999999999887 9999999997543211 11 01222 467888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++|+|... ++..+. -++....++++.++|+.|+-..-..+.+.+.|++.
T Consensus 208 V~l~lP~t~-----------~T~~~i--~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g 257 (333)
T PRK13243 208 VSLHVPLTK-----------ETYHMI--NEERLKLMKPTAILVNTARGKVVDTKALVKALKEG 257 (333)
T ss_pred EEEeCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcC
Confidence 999988532 122222 23566778999999999987766777787777664
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.6e-08 Score=92.01 Aligned_cols=109 Identities=11% Similarity=0.121 Sum_probs=79.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..|..- |.+|++||++....+...+ .++...+++++++++||+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~af--G~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~l~ell~~sDv 258 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPF--NCNLLYHDRLKMDPELEKE-------------------TGAKFEEDLDAMLPKCDV 258 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEECCCCcchhhHhh-------------------cCceecCCHHHHHhhCCE
Confidence 5899999999999999999887 9999999987432221111 123445678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|... ++..+. -+++...++++.++|+.+.-..-..+.+.+.|++.
T Consensus 259 V~l~lPlt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 308 (386)
T PLN03139 259 VVINTPLTE-----------KTRGMF--NKERIAKMKKGVLIVNNARGAIMDTQAVADACSSG 308 (386)
T ss_pred EEEeCCCCH-----------HHHHHh--CHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcC
Confidence 999988532 223332 24677888999999998775555556777777654
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-08 Score=94.20 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=78.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|+|+|||+|.||..+|..|++.. |.+|++||+++... ... .+..++++++++++||+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~-g~~V~~~d~~~~~~--~~~--------------------~~~~~~~l~ell~~aDv 203 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGY-GSDVVAYDPFPNAK--AAT--------------------YVDYKDTIEEAVEGADI 203 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEEECCCccHh--HHh--------------------hccccCCHHHHHHhCCE
Confidence 68999999999999999995432 88999999876432 111 12345678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++|+|..... ..+.. +...+.++++.++|+.|+-..-.++.+...+.+.
T Consensus 204 Ivl~lP~t~~t-----------~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g 253 (332)
T PRK08605 204 VTLHMPATKYN-----------HYLFN--ADLFKHFKKGAVFVNCARGSLVDTKALLDALDNG 253 (332)
T ss_pred EEEeCCCCcch-----------hhhcC--HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 99999864321 22211 3456778999999999997776777777767653
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.5e-07 Score=84.24 Aligned_cols=151 Identities=13% Similarity=0.138 Sum_probs=91.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~-~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|+|||+|.||.++|..|.+. |++|+++++ +++..+.+.+. .+..+ +..+++++||
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~s--G~~Viv~~~~~~~~~~~a~~~-------------------Gv~~~-s~~ea~~~AD 61 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDS--GLNVIVGLRKGGASWKKATED-------------------GFKVG-TVEEAIPQAD 61 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC--CCeEEEEECcChhhHHHHHHC-------------------CCEEC-CHHHHHhcCC
Confidence 6899999999999999999998 888876554 44455544331 23333 4677789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
+|++++|... ....+.+++.+.++++.+|.+...+.. ..+...+.+ +.+ .+-..|. .
T Consensus 62 iVvLaVpp~~--------------~~~~v~~ei~~~l~~g~iVs~aaG~~i---~~~~~~~~~---~~~-VvrvmPn--~ 118 (314)
T TIGR00465 62 LIMNLLPDEV--------------QHEVYEAEIQPLLKEGKTLGFSHGFNI---HFVQIVPPK---DVD-VVMVAPK--G 118 (314)
T ss_pred EEEEeCCcHh--------------HHHHHHHHHHhhCCCCcEEEEeCCccH---hhccccCCC---CCc-EEEECCC--C
Confidence 9999998321 234556778888888887765443432 222222222 122 2334664 2
Q ss_pred cCccccc----cCCCCeEE-EecCCCcchHHHHHHHHHHHhccCC
Q 017997 161 EGTAIQD----LFNPDRVL-IGGRETPEGQKAVKALKDVYAHWVP 200 (362)
Q Consensus 161 ~g~a~~~----~~~~~~vi-iG~~~~~~~~~~~~~~~~l~~~~~~ 200 (362)
|+..+.. -...+.++ ++ . ..+.+..+.+..++..++.
T Consensus 119 p~~~vr~~~~~G~G~~~l~a~~-~--~~~~~~~~~~~~~~~~iG~ 160 (314)
T TIGR00465 119 PGTLVREEYKEGFGVPTLIAVE-Q--DPTGEAMAIALAYAKAIGG 160 (314)
T ss_pred CcHHHHHHhhcCCCeeEEEEec-C--CCCHHHHHHHHHHHHHcCC
Confidence 3331100 01111232 22 2 2246778899999999873
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-07 Score=87.62 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=53.9
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~-V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|||+|.||..++..+.+..++++ +.++|+++++.+.+.+.. .....+++++.+.++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------------------~~~~~~~~~ell~~~ 62 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------------------GAKACLSIDELVEDV 62 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------------------CCeeECCHHHHhcCC
Confidence 7999999999999999999987522355 557899999888765420 124557788877899
Q ss_pred cEEEEecc
Q 017997 80 DIVFVSVN 87 (362)
Q Consensus 80 DvVii~vp 87 (362)
|+|++|+|
T Consensus 63 DvVvi~a~ 70 (265)
T PRK13304 63 DLVVECAS 70 (265)
T ss_pred CEEEEcCC
Confidence 99999976
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-08 Score=85.14 Aligned_cols=114 Identities=23% Similarity=0.265 Sum_probs=77.3
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEEE
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVF 83 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVi 83 (362)
|+|+|+|.||+.+|..|++. |++|+++++++ +.+.+++....+.....++.+ .......+.......+|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~--g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA--GHDVTLVSRSP-RLEAIKEQGLTITGPDGDETV-----QPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT--TCEEEEEESHH-HHHHHHHHCEEEEETTEEEEE-----EEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC--CCceEEEEccc-cHHhhhheeEEEEecccceec-----ccccccCcchhccCCCcEEE
Confidence 78999999999999999998 99999999998 888888655444322211100 01122233323478999999
Q ss_pred EeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHH
Q 017997 84 VSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKIL 141 (362)
Q Consensus 84 i~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l 141 (362)
+||++. ++.++++.+.+++.+++.|+. .....+..+.+.+.+
T Consensus 73 v~vKa~---------------~~~~~l~~l~~~~~~~t~iv~-~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 73 VAVKAY---------------QLEQALQSLKPYLDPNTTIVS-LQNGMGNEEVLAEYF 114 (151)
T ss_dssp E-SSGG---------------GHHHHHHHHCTGEETTEEEEE-ESSSSSHHHHHHCHS
T ss_pred EEeccc---------------chHHHHHHHhhccCCCcEEEE-EeCCCCcHHHHHHHc
Confidence 998853 247788899999988866543 344445555555544
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-07 Score=89.06 Aligned_cols=110 Identities=22% Similarity=0.412 Sum_probs=73.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHH----HHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINA----WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G--~~V~~~d~~~~~~~~----l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
|||+|||+|++|+++|..|+.+ | ++|.++|+++++.+. +... .++.++ ....++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~--g~~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~------------~~i~~~d~~~- 64 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR--GLASEIVLVDINKAKAEGEAMDLAHG-TPFVKP------------VRIYAGDYAD- 64 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCCEEEEEECCchhhhhHHHHHHcc-ccccCC------------eEEeeCCHHH-
Confidence 7999999999999999999998 6 699999999877664 3332 122111 1223567754
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
+++||+||+|++.|..... ++ ..+...+++..+.|.++.+.+ ++++. |.|..
T Consensus 65 l~~aDiViita~~~~~~~~---~r~dl~~~n~~i~~~~~~~l~~~~~~g-iiiv~-tNP~d 120 (308)
T cd05292 65 CKGADVVVITAGANQKPGE---TRLDLLKRNVAIFKEIIPQILKYAPDA-ILLVV-TNPVD 120 (308)
T ss_pred hCCCCEEEEccCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEe-cCcHH
Confidence 9999999999998765410 11 113345666777777766454 44443 34443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-07 Score=88.91 Aligned_cols=104 Identities=10% Similarity=0.122 Sum_probs=76.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||++... .+ . .....++++++++||+
T Consensus 123 ktvgIiG~G~IG~~vA~~l~af--G~~V~~~~r~~~~-----~~--------~-----------~~~~~~l~ell~~aDi 176 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAF--GMNIYAYTRSYVN-----DG--------I-----------SSIYMEPEDIMKKSDF 176 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCcc-----cC--------c-----------ccccCCHHHHHhhCCE
Confidence 4899999999999999877766 9999999986311 11 0 0112467888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|.... +..+. -++....++++.++|+.|.-++-..+.+.+.+++.
T Consensus 177 v~~~lp~t~~-----------T~~li--~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g 226 (303)
T PRK06436 177 VLISLPLTDE-----------TRGMI--NSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNH 226 (303)
T ss_pred EEECCCCCch-----------hhcCc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999885321 22222 24556678999999999987777778887777764
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-07 Score=86.47 Aligned_cols=114 Identities=13% Similarity=0.167 Sum_probs=73.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|.||..++..|.+..+++++. ++|+++++.+.+.+.. +.....+++++.+.++|
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~-----------------g~~~~~~~~eell~~~D 69 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGL-----------------RRPPPVVPLDQLATHAD 69 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhc-----------------CCCcccCCHHHHhcCCC
Confidence 69999999999999999998632378876 7899998887765421 11234567788788999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQI 152 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v 152 (362)
+|++|+|+.. ..+..... ++.+.-|+..|+-.....+++.+..++. |..+++
T Consensus 70 ~Vvi~tp~~~---------------h~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~--g~~l~v 121 (271)
T PRK13302 70 IVVEAAPASV---------------LRAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQN--GGQIIV 121 (271)
T ss_pred EEEECCCcHH---------------HHHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHc--CCEEEE
Confidence 9999987531 23333333 3455555555543233345565555554 344444
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-07 Score=88.63 Aligned_cols=91 Identities=12% Similarity=0.127 Sum_probs=67.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|||+|.||.++|.+|... |++|+++++.....+.... ..+.. .+++++++.||+
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~--G~~ViV~~r~~~s~~~A~~-------------------~G~~v-~sl~Eaak~ADV 74 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS--GVEVVVGVRPGKSFEVAKA-------------------DGFEV-MSVSEAVRTAQV 74 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC--cCEEEEEECcchhhHHHHH-------------------cCCEE-CCHHHHHhcCCE
Confidence 4899999999999999999998 9999999875433333222 11333 378888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhcCCCCEEEEeeCC
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~-~~i~~~l~~~~iVv~~STv 129 (362)
|++++|.+.+ ..++ +.+.+.++++++++..-.+
T Consensus 75 V~llLPd~~t---------------~~V~~~eil~~MK~GaiL~f~hgf 108 (335)
T PRK13403 75 VQMLLPDEQQ---------------AHVYKAEVEENLREGQMLLFSHGF 108 (335)
T ss_pred EEEeCCChHH---------------HHHHHHHHHhcCCCCCEEEECCCc
Confidence 9999985321 2333 5688999999988765443
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.9e-08 Score=81.41 Aligned_cols=111 Identities=17% Similarity=0.174 Sum_probs=74.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|+|+|.||.+++..|++.+ +++|+++|+++++.+.+.+.... .......++..++++++|+
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~Dv 84 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGE--------------LGIAIAYLDLEELLAEADL 84 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhh--------------cccceeecchhhccccCCE
Confidence 58999999999999999999872 38999999999988776542000 0000123455666789999
Q ss_pred EEEeccCCCC-CCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTK-TQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~-~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
||.|+|.+.. .+ +.. + . ...++++.+|++.|++|+.+ .+.+.+.+.
T Consensus 85 vi~~~~~~~~~~~--------~~~-~--~----~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~ 131 (155)
T cd01065 85 IINTTPVGMKPGD--------ELP-L--P----PSLLKPGGVVYDVVYNPLET--PLLKEARAL 131 (155)
T ss_pred EEeCcCCCCCCCC--------CCC-C--C----HHHcCCCCEEEEcCcCCCCC--HHHHHHHHC
Confidence 9999987542 10 000 0 0 11257889999999987765 554445443
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.1e-06 Score=71.57 Aligned_cols=191 Identities=15% Similarity=0.153 Sum_probs=113.1
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||. |.||..++..|.++ ||.|+ +++||
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~--g~~v~---------------------------------------------~~~~D 33 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN--GLGVY---------------------------------------------IKKAD 33 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC--CCEEE---------------------------------------------ECCCC
Confidence 79999998 99999999999998 88875 13689
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
+||+|+|.. .+.+.++++. .+|++.+++.. .+.+ .. .+ ++..+|=+ +
T Consensus 34 lVilavPv~---------------~~~~~i~~~~------~~v~Dv~SvK~----~i~~---~~---~~-~vg~HPMf-G 80 (197)
T PRK06444 34 HAFLSVPID---------------AALNYIESYD------NNFVEISSVKW----PFKK---YS---GK-IVSIHPLF-G 80 (197)
T ss_pred EEEEeCCHH---------------HHHHHHHHhC------CeEEeccccCH----HHHH---hc---CC-EEecCCCC-C
Confidence 999998731 2344444432 35665443322 2221 11 12 57788865 3
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (362)
|..+..+++. .+++-.. ..+++..+.++++++ + ..+..++++. +|-.+|++.-+..+....
T Consensus 81 p~~a~~~lf~--~~iv~~~--~~~~~~~~~~~~l~~--G--~~~~~~t~ee-----------HD~~~A~ishLpH~ia~a 141 (197)
T PRK06444 81 PMSYNDGVHR--TVIFIND--ISRDNYLNEINEMFR--G--YHFVEMTADE-----------HDLLMSEIMVKPYIISMI 141 (197)
T ss_pred CCcCcccccc--eEEEECC--CCCHHHHHHHHHHHc--C--CEEEEeCHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 5566556553 2333222 225677888899987 3 4666778776 333344444443332211
Q ss_pred CCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhHHHHHHHHHHHhc
Q 017997 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECN-GLPEVAEYWKQVIKINDYQKSRFVNRVVASMF 319 (362)
Q Consensus 241 g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~-g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~ 319 (362)
-.+. . . .+ .++|| + .++++|+.. +-. +++|......|.+- ..++++++.++
T Consensus 142 l~~~-------~----~--~~--~t~~f------r---~l~ria~~~~~~~--p~lw~dI~~~N~~a--~~~~~~~~~~~ 193 (197)
T PRK06444 142 LKDI-------K----S--DI--KTGSF------D---KLLEVSEIKEKEN--WEVFNDTIIYNPYT--NVINDLIERLN 193 (197)
T ss_pred HccC-------C----C--CC--CCccH------H---HHHHHHHHhccCC--HHHHHHHHHHCchH--HHHHHHHHHHh
Confidence 1110 0 0 11 22344 3 455666543 333 78999999999875 67777777764
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=98.68 E-value=7e-08 Score=90.63 Aligned_cols=108 Identities=20% Similarity=0.301 Sum_probs=73.3
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcCCcE
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aDv 81 (362)
|+|||+|+||..+|..++.. |+ +|+++|+++++.+...- .+.+..... ...+++.++|+++ +++||+
T Consensus 1 I~IIGaG~vG~~ia~~la~~--~l~eV~L~Di~e~~~~g~~~--------dl~~~~~~~~~~~~I~~t~d~~~-l~dADi 69 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK--ELGDVVLLDIVEGLPQGKAL--------DISQAAPILGSDTKVTGTNDYED-IAGSDV 69 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC--CCcEEEEEeCCCcHHHHHHH--------HHHHhhhhcCCCeEEEEcCCHHH-hCCCCE
Confidence 68999999999999999988 65 99999999875543221 011111110 1245777778765 999999
Q ss_pred EEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
||+++.+|...+. ++ .-++..++++++.|.++.+++.+|+.
T Consensus 70 VIit~g~p~~~~~---~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~ 114 (300)
T cd01339 70 VVITAGIPRKPGM---SRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV 114 (300)
T ss_pred EEEecCCCCCcCC---CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 9999988865421 11 12556677888888888755544443
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.4e-07 Score=76.99 Aligned_cols=118 Identities=25% Similarity=0.360 Sum_probs=74.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+ |.+|..+|..|...+.+.++.++|+++++.+..... ++..... .....+...+..+++++||
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~D--------l~~~~~~-~~~~~~i~~~~~~~~~~aD 71 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALD--------LSHASAP-LPSPVRITSGDYEALKDAD 71 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH--------HHHHHHG-STEEEEEEESSGGGGTTES
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehh--------hhhhhhh-ccccccccccccccccccc
Confidence 89999999 999999999999885567899999998877654321 1111111 1112333334445599999
Q ss_pred EEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
+|+++...|..+ | .++ ..+...+++..+.+.++. ++.++++- |.|...
T Consensus 72 ivvitag~~~~~-g--~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivv-tNPvd~ 123 (141)
T PF00056_consen 72 IVVITAGVPRKP-G--MSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVV-TNPVDV 123 (141)
T ss_dssp EEEETTSTSSST-T--SSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE--SSSHHH
T ss_pred EEEEeccccccc-c--ccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEe-CCcHHH
Confidence 999998876543 1 111 122344556666777776 44554432 556553
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.7e-07 Score=84.44 Aligned_cols=134 Identities=16% Similarity=0.162 Sum_probs=86.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~-~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+++||||+|.+|..+|..+..- |.+|++||+ .+...+.. .......++++.++.||
T Consensus 143 kTvGIiG~G~IG~~va~~l~af--gm~v~~~d~~~~~~~~~~---------------------~~~~~~~~Ld~lL~~sD 199 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAF--GMKVIGYDPYSPRERAGV---------------------DGVVGVDSLDELLAEAD 199 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEECCCCchhhhcc---------------------ccceecccHHHHHhhCC
Confidence 4899999999999999999887 999999999 33222111 11233467888899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC-CCceEEeeCCccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFL 159 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~-g~~~~v~~~Pe~~ 159 (362)
+|.+.+|-.. ++..+.. .+....++++.++|+++=-+.=..+.|.+.|++... |.-+. ++.+|-.
T Consensus 200 iv~lh~PlT~-----------eT~g~i~--~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lD-Vf~~EPl 265 (324)
T COG0111 200 ILTLHLPLTP-----------ETRGLIN--AEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALD-VFEEEPL 265 (324)
T ss_pred EEEEcCCCCc-----------chhcccC--HHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEec-CCCCCCC
Confidence 9999987532 2333322 234456889999998765433344567777765321 21111 3567766
Q ss_pred ccCccccccCCCCeEE
Q 017997 160 AEGTAIQDLFNPDRVL 175 (362)
Q Consensus 160 ~~g~a~~~~~~~~~vi 175 (362)
.+++. ++..+.|+
T Consensus 266 ~~~~p---L~~~pnV~ 278 (324)
T COG0111 266 PADSP---LWDLPNVI 278 (324)
T ss_pred CCCCh---hhcCCCeE
Confidence 66544 34444454
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.2e-07 Score=90.01 Aligned_cols=107 Identities=11% Similarity=0.087 Sum_probs=76.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||+.... +.... ...... +++++++.||+
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~-~~~~~-------------------~g~~~~-~l~ell~~aDi 197 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAF--GMKVIAYDPYISP-ERAAQ-------------------LGVELV-SLDELLARADF 197 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCCh-hHHHh-------------------cCCEEE-cHHHHHhhCCE
Confidence 4899999999999999999887 9999999985321 11111 013333 68888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|.... +..+.. .+....++++.++|+.|.-+.=..+.+.+.|++.
T Consensus 198 V~l~lP~t~~-----------t~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 247 (526)
T PRK13581 198 ITLHTPLTPE-----------TRGLIG--AEELAKMKPGVRIINCARGGIIDEAALAEALKSG 247 (526)
T ss_pred EEEccCCChH-----------hhcCcC--HHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcC
Confidence 9999985322 122221 4567778999999998876665667777777664
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.7e-07 Score=83.96 Aligned_cols=115 Identities=23% Similarity=0.298 Sum_probs=74.9
Q ss_pred EEEEcCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G--~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|+|||+|++|.++|..++.. | ++++++|+++++++..... +++........++..++|++ ++++||+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~--~~~~el~l~D~~~~~~~g~~~D--------L~~~~~~~~~~~i~~~~~~~-~l~~aDi 69 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK--GLASELVLVDVNEEKAKGDALD--------LSHASAFLATGTIVRGGDYA-DAADADI 69 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCccHHHHHHHh--------HHHhccccCCCeEEECCCHH-HhCCCCE
Confidence 68999999999999999988 6 6899999999888776652 22211110112345556765 5999999
Q ss_pred EEEeccCCCCCCCCCCCCC----CChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 82 VFVSVNTPTKTQGLGAGKA----ADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~----~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
||+|.++|.... .++. .+...+++..+.|.++. ++.+|++-| .|....
T Consensus 70 VIitag~p~~~~---~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~s-NP~d~~ 121 (300)
T cd00300 70 VVITAGAPRKPG---ETRLDLINRNAPILRSVITNLKKYG-PDAIILVVS-NPVDIL 121 (300)
T ss_pred EEEcCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcc-ChHHHH
Confidence 999999886541 1111 12234556666777766 455554433 454443
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-06 Score=88.18 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=76.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||+.... +...+ -.....+++++++++||+
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~-~~~~~-------------------~g~~~~~~l~ell~~aDv 196 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF--GMKVLAYDPYISP-ERAEQ-------------------LGVELVDDLDELLARADF 196 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCCh-hHHHh-------------------cCCEEcCCHHHHHhhCCE
Confidence 4899999999999999999877 9999999984211 11111 013444678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|.... +..+.. +.....++++.++|+.|.-+.=..+.|.+.|++.
T Consensus 197 V~l~lPlt~~-----------T~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 246 (525)
T TIGR01327 197 ITVHTPLTPE-----------TRGLIG--AEELAKMKKGVIIVNCARGGIIDEAALYEALEEG 246 (525)
T ss_pred EEEccCCChh-----------hccCcC--HHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcC
Confidence 9999985322 122221 3455678999999998886665667777777764
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-07 Score=85.95 Aligned_cols=107 Identities=8% Similarity=0.088 Sum_probs=73.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..|... |++|++||++++..+ +.. ......++++++++||+
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af--G~~V~~~~~~~~~~~------------~~~---------~~~~~~~l~e~l~~aDv 193 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW--GFPLRCWSRSRKSWP------------GVQ---------SFAGREELSAFLSQTRV 193 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCCCC------------Cce---------eecccccHHHHHhcCCE
Confidence 5899999999999999999987 999999998653211 000 01112467788999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|.. +++..+. -+.....++++.++|+.+--+.=..+.|.+.|++.
T Consensus 194 vv~~lPlt-----------~~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g 243 (312)
T PRK15469 194 LINLLPNT-----------PETVGII--NQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSG 243 (312)
T ss_pred EEECCCCC-----------HHHHHHh--HHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcC
Confidence 99998843 2223332 24567778999999986543222345566667654
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-06 Score=70.13 Aligned_cols=70 Identities=24% Similarity=0.429 Sum_probs=55.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--C
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (362)
|||+|||+|.+|......+.+..++.+++ ++|+++++.+.+.+. -++...+|.++.++ +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~------------------~~~~~~~~~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK------------------YGIPVYTDLEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH------------------TTSEEESSHHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH------------------hcccchhHHHHHHHhhc
Confidence 69999999999999998888775577765 679999998876541 12446788888776 7
Q ss_pred CcEEEEeccCC
Q 017997 79 ADIVFVSVNTP 89 (362)
Q Consensus 79 aDvVii~vptp 89 (362)
.|+|++|+|+.
T Consensus 63 ~D~V~I~tp~~ 73 (120)
T PF01408_consen 63 VDAVIIATPPS 73 (120)
T ss_dssp ESEEEEESSGG
T ss_pred CCEEEEecCCc
Confidence 99999998753
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-06 Score=74.75 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=71.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.+|..+|..+..- |.+|++||++....+.... .... ..++++.++.||+
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~~-------------------~~~~-~~~l~ell~~aDi 94 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEGADE-------------------FGVE-YVSLDELLAQADI 94 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHHHHH-------------------TTEE-ESSHHHHHHH-SE
T ss_pred CEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhhccc-------------------ccce-eeehhhhcchhhh
Confidence 4899999999999999999987 9999999998776542222 1233 3578888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|...+..+ -.| +.....++++.++|+.+--..=..+.+.+.+++.
T Consensus 95 v~~~~plt~~T~~-----li~--------~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g 144 (178)
T PF02826_consen 95 VSLHLPLTPETRG-----LIN--------AEFLAKMKPGAVLVNVARGELVDEDALLDALESG 144 (178)
T ss_dssp EEE-SSSSTTTTT-----SBS--------HHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTT
T ss_pred hhhhhccccccce-----eee--------eeeeeccccceEEEeccchhhhhhhHHHHHHhhc
Confidence 9999984222111 222 3445668999999985543222334566767653
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-06 Score=81.04 Aligned_cols=117 Identities=23% Similarity=0.296 Sum_probs=73.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCE-EEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNL-FFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l-~~t~d~~~a~~~aD 80 (362)
+||+|||+|.+|.++|..|+..+..++++++|+++++.+.+... +.+.... ..... ..+.++++ +++||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~d--------L~~~~~~-~~~~~~i~~~~~~~-l~~aD 70 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALD--------LEDALAF-LPSPVKIKAGDYSD-CKDAD 70 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhh--------HHHHhhc-cCCCeEEEcCCHHH-hCCCC
Confidence 58999999999999999999982226899999999887765432 2111110 01112 23455554 89999
Q ss_pred EEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
+||++++.|... | .++ .-+...+++..+.|.++.+ +.+|++-| .|..+
T Consensus 71 IVIitag~~~~~-g--~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vivvs-NP~d~ 122 (306)
T cd05291 71 IVVITAGAPQKP-G--ETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLVAS-NPVDV 122 (306)
T ss_pred EEEEccCCCCCC-C--CCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEec-ChHHH
Confidence 999999877543 2 111 1122345666667777654 44554433 45544
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-06 Score=70.52 Aligned_cols=90 Identities=20% Similarity=0.257 Sum_probs=71.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCC-------CC-C--ccCCCCCcccChhHhHHHH
Q 017997 211 SAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIG-------PK-F--LNASVGFGGSCFQKDILNL 280 (362)
Q Consensus 211 ~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~~~i~-------~~-~--~~~g~g~gg~cl~kD~~~l 280 (362)
.+...|+++|.+.+.++..+.|...++++.|+|++++.+++...+--+ ++ + -.+.++|....+.||+.+.
T Consensus 2 ~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~ 81 (122)
T PF14833_consen 2 AGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRLA 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHHH
Confidence 578999999999999999999999999999999999999998764211 11 1 1345678889999999999
Q ss_pred HHHHHhCCCchhHHHHHHHHHH
Q 017997 281 VYICECNGLPEVAEYWKQVIKI 302 (362)
Q Consensus 281 ~~~a~~~g~~~~~~~~~~~~~~ 302 (362)
.+.+++.|+| .|+.+.+++.
T Consensus 82 ~~~a~~~g~~--~p~~~~~~~~ 101 (122)
T PF14833_consen 82 LDLAKEAGVP--LPLGSAARQL 101 (122)
T ss_dssp HHHHHHTT-----HHHHHHHHH
T ss_pred HHHHHHcCCC--CHHHHHHHHH
Confidence 9999999999 7888876543
|
... |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.47 E-value=1e-06 Score=82.08 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=70.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|+|+|.+|..+|..|... |.+|++++|++++.+.+.+... ..+. .+++.+.++++|+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~--G~~V~v~~R~~~~~~~~~~~g~----------------~~~~-~~~l~~~l~~aDi 212 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSAL--GARVFVGARSSADLARITEMGL----------------IPFP-LNKLEEKVAEIDI 212 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHCCC----------------eeec-HHHHHHHhccCCE
Confidence 4799999999999999999988 8999999999987766543110 0011 1345566889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
||.|+|.+. . -+...+.++++.+|++.++.|.+|-
T Consensus 213 Vint~P~~i----------------i--~~~~l~~~k~~aliIDlas~Pg~td 247 (287)
T TIGR02853 213 VINTIPALV----------------L--TADVLSKLPKHAVIIDLASKPGGTD 247 (287)
T ss_pred EEECCChHH----------------h--CHHHHhcCCCCeEEEEeCcCCCCCC
Confidence 999987431 1 1234456788999999998887763
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-06 Score=85.75 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=59.1
Q ss_pred ceEEEEcCChhHHHHHH--HHHH--cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGGPTMA--VIAL--KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~--~la~--~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (362)
+||+|||+|.||.+.+. .++. ..+|++|++||+++++++.+.... ...+... ...+++.|+|+.+++
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~--------~~~~~~~~~~~~I~~ttD~~eal 72 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILA--------KKIVEELGAPLKIEATTDRREAL 72 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHH--------HHHHHhcCCCeEEEEeCCHHHHh
Confidence 69999999999998766 3431 123889999999999988765421 1122211 124578899998899
Q ss_pred cCCcEEEEeccCCC
Q 017997 77 SEADIVFVSVNTPT 90 (362)
Q Consensus 77 ~~aDvVii~vptp~ 90 (362)
++||+||++++.+.
T Consensus 73 ~~AD~Vi~ai~~~~ 86 (423)
T cd05297 73 DGADFVINTIQVGG 86 (423)
T ss_pred cCCCEEEEeeEecC
Confidence 99999999998643
|
linked to 3D####ucture |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-06 Score=82.41 Aligned_cols=118 Identities=18% Similarity=0.257 Sum_probs=74.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+||+|||+|.+|.++|..|+..+...++.++|+++++.+..... +...........++.++|+++ +++||+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~D--------l~~~~~~~~~~~v~~~~dy~~-~~~adi 74 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMD--------LQHGSAFLKNPKIEADKDYSV-TANSKV 74 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHH--------HHHhhccCCCCEEEECCCHHH-hCCCCE
Confidence 69999999999999999999874345899999988766543221 111000000124666788886 999999
Q ss_pred EEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
||++...|... | .++ .-+...+++..+.|.++. ++.++++-| .|...
T Consensus 75 vvitaG~~~k~-g--~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvs-NP~d~ 125 (312)
T cd05293 75 VIVTAGARQNE-G--ESRLDLVQRNVDIFKGIIPKLVKYS-PNAILLVVS-NPVDI 125 (312)
T ss_pred EEECCCCCCCC-C--CCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEcc-ChHHH
Confidence 99998876543 2 111 122234566667777774 455554433 44443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-05 Score=71.10 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=37.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+|+|+|+|.||..+|..|.+. |++|+++|+++++++.+.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~--G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE--GAKLIVADINEEAVARAAE 69 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence 6899999999999999999999 9999999999998887764
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=83.23 Aligned_cols=111 Identities=20% Similarity=0.291 Sum_probs=70.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~a 79 (362)
+||+|||+|.||..+|..++.. |+ +|+++|+++++.+.-.-.. ....... ...+++.++|++ ++++|
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~--gl~~i~LvDi~~~~~~~~~ld~--------~~~~~~~~~~~~I~~~~d~~-~l~~a 75 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK--NLGDVVLFDIVKNIPQGKALDI--------SHSNVIAGSNSKVIGTNNYE-DIAGS 75 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCCchhhHHHHHH--------HhhhhccCCCeEEEECCCHH-HhCCC
Confidence 5899999999999999999988 75 8999999988643211000 0000000 112467778886 59999
Q ss_pred cEEEEeccCCCCCCCCCC---CC----CCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 80 DIVFVSVNTPTKTQGLGA---GK----AADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~---~~----~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
|+||++...|... +..+ ++ ..+...+++..+.|.++.++. ++++
T Consensus 76 DiVI~tag~~~~~-~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a-~~iv 126 (321)
T PTZ00082 76 DVVIVTAGLTKRP-GKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNA-FVIV 126 (321)
T ss_pred CEEEECCCCCCCC-CCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEE
Confidence 9999998765432 1000 00 113445677777888877544 4443
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-05 Score=73.08 Aligned_cols=175 Identities=14% Similarity=0.141 Sum_probs=102.4
Q ss_pred CCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHH
Q 017997 26 SIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTY 105 (362)
Q Consensus 26 G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~ 105 (362)
.++|++++|++++.+.+.+. -+...+++..++++++|+||+||+ |. .
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~------------------~g~~~~~~~~e~~~~aDiIiLaVk-P~--------------~ 55 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKE------------------LGIVASSDAQEAVKEADVVFLAVK-PQ--------------D 55 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHH------------------cCcEEeCChHHHHhhCCEEEEEeC-HH--------------H
Confidence 47899999999998877542 024556677777889999999998 52 4
Q ss_pred HHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccccCccccccCCCCeEEEecCCCcchH
Q 017997 106 WESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQ 185 (362)
Q Consensus 106 l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~ 185 (362)
+.++++++.+.+.++++|| |....=+.+.+...+... .. .+ |..|-....- .+....+..+. ..++
T Consensus 56 i~~vl~~l~~~~~~~~~iv--S~~agi~~~~l~~~~~~~---~~-iv-----R~mPn~~~~~-~~g~t~~~~~~--~~~~ 121 (245)
T TIGR00112 56 LEEVLSELKSEKGKDKLLI--SIAAGVTLEKLSQLLGGT---RR-VV-----RVMPNTPAKV-GAGVTAIAANA--NVSE 121 (245)
T ss_pred HHHHHHHHhhhccCCCEEE--EecCCCCHHHHHHHcCCC---Ce-EE-----EECCChHHHH-hCCeEEEecCC--CCCH
Confidence 6788888887776677665 333333445665555321 11 11 2333222111 11112222222 2246
Q ss_pred HHHHHHHHHHhccCCCCcEEeCC--hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 017997 186 KAVKALKDVYAHWVPEDRILTTN--LWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVG 252 (362)
Q Consensus 186 ~~~~~~~~l~~~~~~~~~~~~~~--~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~ 252 (362)
+..+.++++|+.++ ..+.+.. ...+-..-=...+ ....++..+...+.+.|++.++..+++.
T Consensus 122 ~~~~~v~~lf~~~G--~~~~v~E~~~~~~talsgsgPA---~~~~~~~al~~~~v~~Gl~~~~A~~lv~ 185 (245)
T TIGR00112 122 EDRALVLALFKAVG--EVVELPEALMDAVTALSGSGPA---YVFLFIEALADAGVKQGLPRELALELAA 185 (245)
T ss_pred HHHHHHHHHHHhCC--CEEEECHHHcchHHhhccCcHH---HHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 67789999999986 3444431 1111111112223 3345666677778888999888877765
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.1e-06 Score=83.16 Aligned_cols=81 Identities=22% Similarity=0.202 Sum_probs=57.8
Q ss_pred CceEEEEcCChhHHHHHH--HHH--HcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhh
Q 017997 1 MVKICCIGAGYVGGPTMA--VIA--LKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKH 75 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~--~la--~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a 75 (362)
||||+|||+|.||.+.+. .++ ...++.+|+++|+++++++....- +....... ...+++.|+|..++
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l--------~~~~~~~~~~~~~i~~ttD~~ea 72 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV--------ARKLAESLGASAKITATTDRREA 72 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEECCHHHH
Confidence 689999999999977665 554 333467999999999988743320 11111111 12357888998888
Q ss_pred hcCCcEEEEeccCC
Q 017997 76 VSEADIVFVSVNTP 89 (362)
Q Consensus 76 ~~~aDvVii~vptp 89 (362)
+++||+||+++..+
T Consensus 73 l~dADfVv~ti~vg 86 (431)
T PRK15076 73 LQGADYVINAIQVG 86 (431)
T ss_pred hCCCCEEeEeeeeC
Confidence 99999999998765
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.4e-06 Score=79.91 Aligned_cols=120 Identities=15% Similarity=0.117 Sum_probs=72.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |.+|++||++...-....-+ .+ ......+... . . ...++++++++||+
T Consensus 160 ktvGIiG~G~IG~~vA~~l~af--G~~V~~~dr~~~~~~~~~~~-~~--~~~~~~~~~~---~-~-~~~~L~ell~~aDi 229 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPF--GVKLLATRRSWTSEPEDGLL-IP--NGDVDDLVDE---K-G-GHEDIYEFAGEADI 229 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--CCEEEEECCCCChhhhhhhc-cc--cccccccccc---c-C-cccCHHHHHhhCCE
Confidence 4899999999999999999877 99999999873221110000 00 0000000000 0 1 12468888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|.... +..+.. ++....++++.++|+.+--+.=..+.|.+.|.+.
T Consensus 230 Vvl~lPlt~~-----------T~~li~--~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g 279 (347)
T PLN02928 230 VVLCCTLTKE-----------TAGIVN--DEFLSSMKKGALLVNIARGGLLDYDAVLAALESG 279 (347)
T ss_pred EEECCCCChH-----------hhcccC--HHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999884321 122221 4556678999999986642222334566666653
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=6e-06 Score=80.72 Aligned_cols=105 Identities=16% Similarity=0.150 Sum_probs=75.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|||||+|.+|..+|..+..- |.+|++||+.+.. .. +......++++.++.||+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~f--Gm~V~~~d~~~~~----~~-------------------~~~~~~~~l~ell~~sDi 206 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESL--GMRVYFYDIEDKL----PL-------------------GNARQVGSLEELLAQSDV 206 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCccc----cc-------------------CCceecCCHHHHHhhCCE
Confidence 4799999999999999998876 9999999985321 00 123345578898999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|.+++|... ++..+.. ++....++++.++|+.|--+.=..+.|.+.|++.
T Consensus 207 Vslh~Plt~-----------~T~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 256 (409)
T PRK11790 207 VSLHVPETP-----------STKNMIG--AEELALMKPGAILINASRGTVVDIDALADALKSG 256 (409)
T ss_pred EEEcCCCCh-----------HHhhccC--HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcC
Confidence 999987421 2222221 3455678999999998765555566777777653
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.4e-06 Score=76.55 Aligned_cols=103 Identities=16% Similarity=0.127 Sum_probs=69.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.+|..+|..+..- |.+|++||+..... . ..+.. .++++.++.||+
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~f--gm~V~~~d~~~~~~----~-------------------~~~~~-~~l~ell~~sDv 199 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAF--GAKVVYYSTSGKNK----N-------------------EEYER-VSLEELLKTSDI 199 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhc--CCEEEEECCCcccc----c-------------------cCcee-ecHHHHhhcCCE
Confidence 4799999999999999888765 89999999853110 0 01222 367888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHh
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~ 143 (362)
|++++|-... +..+. -+.....++++.++|+.|=-+.=..+.|.+.|++
T Consensus 200 v~lh~Plt~~-----------T~~li--~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 200 ISIHAPLNEK-----------TKNLI--AYKELKLLKDGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred EEEeCCCCch-----------hhccc--CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 9999884322 12221 1344566899999998664332234566666665
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=98.36 E-value=5e-06 Score=76.58 Aligned_cols=121 Identities=22% Similarity=0.299 Sum_probs=77.7
Q ss_pred EEEEcC-ChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 4 ICCIGA-GYVGGPTMAVIALKC--PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 4 I~VIGl-G~~G~~lA~~la~~~--~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+|||+ |.||..+|..|+..+ ...+|+++|+++++++..... +.+........++++++|+.+++++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~d--------l~~~~~~~~~~~i~~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMD--------LQDAVEPLADIKVSITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHH--------HHHhhhhccCcEEEECCchHHHhCCCC
Confidence 689999 999999999999882 227999999998777654431 111111111235778888777799999
Q ss_pred EEEEeccCCCCCCCCCC--CCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH
Q 017997 81 IVFVSVNTPTKTQGLGA--GKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (362)
Q Consensus 81 vVii~vptp~~~~g~~~--~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~ 135 (362)
+||++...|... |.+. .-.-+...+++..+.+.++. ++.++++- |.|.+..-
T Consensus 73 iVv~t~~~~~~~-g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~-tNP~d~~t 126 (263)
T cd00650 73 VVIITAGVGRKP-GMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVV-SNPVDIIT 126 (263)
T ss_pred EEEECCCCCCCc-CCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe-cCcHHHHH
Confidence 999987655332 1100 00122344567777777776 55566554 46665543
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.8e-06 Score=77.98 Aligned_cols=95 Identities=14% Similarity=0.241 Sum_probs=70.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.|++|||.|.+|..++..|... |.+|+++|+++++.+...+-.. .....++..+.+.++|+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~~G~-----------------~~~~~~~l~~~l~~aDi 213 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITEMGL-----------------SPFHLSELAEEVGKIDI 213 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCC-----------------eeecHHHHHHHhCCCCE
Confidence 5899999999999999999988 8999999999887766543110 01111345566889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
||.|+|.+. ..+...+.++++.+|++.++-|.++
T Consensus 214 VI~t~p~~~------------------i~~~~l~~~~~g~vIIDla~~pggt 247 (296)
T PRK08306 214 IFNTIPALV------------------LTKEVLSKMPPEALIIDLASKPGGT 247 (296)
T ss_pred EEECCChhh------------------hhHHHHHcCCCCcEEEEEccCCCCc
Confidence 999987321 1234556678899999888777664
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-05 Score=75.95 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=73.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+++||||+|.+|..+|..+. .+ |.+|..||+++. -+.-.. .+.++.+ +++.++++|+
T Consensus 147 ktvGIiG~GrIG~avA~r~~-~F-gm~v~y~~~~~~-~~~~~~-------------------~~~~y~~-l~ell~~sDi 203 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLK-GF-GMKVLYYDRSPN-PEAEKE-------------------LGARYVD-LDELLAESDI 203 (324)
T ss_pred CEEEEECCCHHHHHHHHHHh-cC-CCEEEEECCCCC-hHHHhh-------------------cCceecc-HHHHHHhCCE
Confidence 58999999999999999998 43 899999999864 111111 1244555 7888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|.+.+|-. ++..++.. +...+.++++.++|+++=-+.=..+.+.+.|++.
T Consensus 204 i~l~~Plt-----------~~T~hLin--~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g 253 (324)
T COG1052 204 ISLHCPLT-----------PETRHLIN--AEELAKMKPGAILVNTARGGLVDEQALIDALKSG 253 (324)
T ss_pred EEEeCCCC-----------hHHhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 99998742 23333322 3556678999999986643332345666667654
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-05 Score=76.13 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=71.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+++||||+|.+|..+|..+...+ |.+|..||+....-. ... ...+. .+++++++.||+
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~f-gm~V~~~~~~~~~~~-~~~-------------------~~~~~-~~l~ell~~sDv 203 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGF-NMPILYNARRHHKEA-EER-------------------FNARY-CDLDTLLQESDF 203 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcC-CCEEEEECCCCchhh-HHh-------------------cCcEe-cCHHHHHHhCCE
Confidence 48999999999999999886232 889999998632110 000 01233 378888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|-.. ++..+. -+.....++++.++|+.+=-+.=..+.|.+.|++.
T Consensus 204 v~lh~plt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 253 (323)
T PRK15409 204 VCIILPLTD-----------ETHHLF--GAEQFAKMKSSAIFINAGRGPVVDENALIAALQKG 253 (323)
T ss_pred EEEeCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 999988432 222222 13456678999999986643333345677777653
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=3e-06 Score=80.21 Aligned_cols=117 Identities=19% Similarity=0.235 Sum_probs=71.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~a 79 (362)
+||+|||+|.||..+|..++.. | .++.++|+++++.+...-.. ....... ...+++.++|++ ++++|
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~--~~~~l~L~Di~~~~~~g~~lDl--------~~~~~~~~~~~~i~~~~d~~-~l~~A 74 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQK--NLGDVVLYDVIKGVPQGKALDL--------KHFSTLVGSNINILGTNNYE-DIKDS 74 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCCeEEEEECCCccchhHHHHH--------hhhccccCCCeEEEeCCCHH-HhCCC
Confidence 6999999999999999999988 6 68999999987654321100 0000000 012456667887 58999
Q ss_pred cEEEEeccCCCCCCCCCC--CCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 80 DIVFVSVNTPTKTQGLGA--GKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~--~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
|+||++...|... ++.. .-..+...+++..+.+.++.+ +.++++- |.|..
T Consensus 75 DiVVitag~~~~~-g~~r~dll~~n~~i~~~i~~~i~~~~p-~a~vivv-sNP~d 126 (319)
T PTZ00117 75 DVVVITAGVQRKE-EMTREDLLTINGKIMKSVAESVKKYCP-NAFVICV-TNPLD 126 (319)
T ss_pred CEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe-cChHH
Confidence 9999998654322 1000 000112345677778888764 4444332 34443
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.4e-06 Score=81.31 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=74.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|||||+|.||..+|..+... |++|++||+..... . +... ..++++.+++||+
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~--G~~V~~~Dp~~~~~----~-------------------~~~~-~~~l~ell~~aDi 170 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGL--GWKVLVCDPPRQEA----E-------------------GDGD-FVSLERILEECDV 170 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCccccc----c-------------------cCcc-ccCHHHHHhhCCE
Confidence 4799999999999999999987 99999999753211 0 0111 2367888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|-..+ | ...+..+.. +.....+++++++|+.|.-++-..+.+.+.+++.
T Consensus 171 V~lh~Plt~~--g-----~~~T~~li~--~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g 224 (381)
T PRK00257 171 ISLHTPLTKE--G-----EHPTRHLLD--EAFLASLRPGAWLINASRGAVVDNQALREALLSG 224 (381)
T ss_pred EEEeCcCCCC--c-----cccccccCC--HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence 9999884221 0 111222221 3455668999999998876665666777767653
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-06 Score=79.28 Aligned_cols=72 Identities=26% Similarity=0.358 Sum_probs=56.8
Q ss_pred ceEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|||.| .||.|||..|.++ |++|++|++.. .++++++++||
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~--gatVtv~~~~t---------------------------------~~l~e~~~~AD 204 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQA--HCSVTVVHSRS---------------------------------TDAKALCRQAD 204 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEECCCC---------------------------------CCHHHHHhcCC
Confidence 479999996 9999999999999 99999997641 24667789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
+||.|++.|.. +... .++++++||+.|+
T Consensus 205 IVIsavg~~~~--------------v~~~------~ik~GaiVIDvgi 232 (301)
T PRK14194 205 IVVAAVGRPRL--------------IDAD------WLKPGAVVIDVGI 232 (301)
T ss_pred EEEEecCChhc--------------ccHh------hccCCcEEEEecc
Confidence 99999986532 2221 2789999988654
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.7e-06 Score=69.74 Aligned_cols=89 Identities=20% Similarity=0.132 Sum_probs=60.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~-~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|||.|..|...|.+|.+. |.+|++-.+... ..++.++. .++. .+.+++++.+|
T Consensus 5 k~IAViGyGsQG~a~AlNLrDS--G~~V~Vglr~~s~s~~~A~~~-------------------Gf~v-~~~~eAv~~aD 62 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDS--GVNVIVGLREGSASWEKAKAD-------------------GFEV-MSVAEAVKKAD 62 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHC--C-EEEEEE-TTCHHHHHHHHT-------------------T-EC-CEHHHHHHC-S
T ss_pred CEEEEECCChHHHHHHHHHHhC--CCCEEEEecCCCcCHHHHHHC-------------------CCee-ccHHHHHhhCC
Confidence 5899999999999999999999 999998887655 44444431 2443 45778899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhcCCCCEEEEee
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKS 127 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~-~~i~~~l~~~~iVv~~S 127 (362)
+|++.+|.. .-.++. ++|.++++++++++...
T Consensus 63 vV~~L~PD~---------------~q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 63 VVMLLLPDE---------------VQPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp EEEE-S-HH---------------HHHHHHHHHHHHHS-TT-EEEESS
T ss_pred EEEEeCChH---------------HHHHHHHHHHHhhCCCCCEEEeCC
Confidence 999998732 124454 89999999999988644
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.7e-05 Score=70.43 Aligned_cols=151 Identities=15% Similarity=0.058 Sum_probs=88.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh-hhcCCcE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK-HVSEADI 81 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~-a~~~aDv 81 (362)
+|+|||.|.||.-+|..|.++ ||.|++.||.. .+.+++.. |. ..-+++.+ +-+..|+
T Consensus 54 ~IaIIGfGnmGqflAetli~a--Gh~li~hsRsd--yssaa~~y-----------------g~-~~ft~lhdlcerhpDv 111 (480)
T KOG2380|consen 54 VIAIIGFGNMGQFLAETLIDA--GHGLICHSRSD--YSSAAEKY-----------------GS-AKFTLLHDLCERHPDV 111 (480)
T ss_pred EEEEEecCcHHHHHHHHHHhc--CceeEecCcch--hHHHHHHh-----------------cc-cccccHHHHHhcCCCE
Confidence 799999999999999999999 99999999975 33333310 11 11233333 2368999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-cCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEe-----eC
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-SKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQIL-----SN 155 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~-l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~-----~~ 155 (362)
|+.||.. ..+..+++..... ++.+++++...++..-..+.+.+.|++ +|.++ ++
T Consensus 112 vLlctsi---------------lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPk-----dfDIlctHpmfG 171 (480)
T KOG2380|consen 112 VLLCTSI---------------LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK-----DFDILCTHPMFG 171 (480)
T ss_pred EEEEehh---------------hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCcc-----ccceEeecCCcC
Confidence 9999742 1345666666555 778888876544422222223334433 33332 34
Q ss_pred CcccccCccccccCCCCeEEEecC--CCcchHHHHHHHHHHHhccCC
Q 017997 156 PEFLAEGTAIQDLFNPDRVLIGGR--ETPEGQKAVKALKDVYAHWVP 200 (362)
Q Consensus 156 Pe~~~~g~a~~~~~~~~~viiG~~--~~~~~~~~~~~~~~l~~~~~~ 200 (362)
|+...++. ...+-|++-.. ....-++..|.+.++|.+.+.
T Consensus 172 Pksvnh~w-----qglpfVydkvRig~~~~r~ercE~fleIf~cegc 213 (480)
T KOG2380|consen 172 PKSVNHEW-----QGLPFVYDKVRIGYAASRPERCEFFLEIFACEGC 213 (480)
T ss_pred CCcCCCcc-----ccCceEEEEeeccccccchHHHHHHHHHHHhcCC
Confidence 44222221 22223322211 111226788999999998864
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=75.44 Aligned_cols=118 Identities=18% Similarity=0.269 Sum_probs=70.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhhcCCcE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHVSEADI 81 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~~aDv 81 (362)
||+|||+|.+|.++|..|+.++..-++.++|+++++.+..... +..........+.+. +.|+++ +++||+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D--------L~~~~~~~~~~~~~i~~~~y~~-~~~aDi 71 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD--------FHHATALTYSTNTKIRAGDYDD-CADADI 71 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH--------HHhhhccCCCCCEEEEECCHHH-hCCCCE
Confidence 7999999999999999999873223899999987765533211 000000000112222 456665 999999
Q ss_pred EEEeccCCCCCCCCCCCC------CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 82 VFVSVNTPTKTQGLGAGK------AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~------~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
||++...|... | .++ ..+.+.+++..+.+.++. ++.++++ -|.|..+.
T Consensus 72 vvitaG~~~kp-g--~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~iv-vsNPvDv~ 125 (307)
T cd05290 72 IVITAGPSIDP-G--NTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIIL-ITNPLDIA 125 (307)
T ss_pred EEECCCCCCCC-C--CCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE-ecCcHHHH
Confidence 99998876543 1 121 122345566666777665 4445443 34565543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.22 E-value=9e-06 Score=77.62 Aligned_cols=118 Identities=21% Similarity=0.294 Sum_probs=72.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+||+|||+|.+|.++|..++..+...++.++|+++++++..... +.+.........++.++|+++ +++||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~D--------L~~~~~~~~~~~i~~~~dy~~-~~daDi 108 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLD--------LQHAAAFLPRTKILASTDYAV-TAGSDL 108 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHH--------HHhhhhcCCCCEEEeCCCHHH-hCCCCE
Confidence 59999999999999999998873334899999998776543321 111110000123444467776 999999
Q ss_pred EEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
||++...|... | .++ ..+...+++..+.|.++.+ +.++++-| .|..+
T Consensus 109 VVitAG~~~k~-g--~tR~dll~~N~~I~~~i~~~I~~~~p-~~ivivvt-NPvdv 159 (350)
T PLN02602 109 CIVTAGARQIP-G--ESRLNLLQRNVALFRKIIPELAKYSP-DTILLIVS-NPVDV 159 (350)
T ss_pred EEECCCCCCCc-C--CCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEec-CchHH
Confidence 99998766433 2 111 1122345566667777654 44544433 45544
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.7e-05 Score=75.41 Aligned_cols=121 Identities=16% Similarity=0.169 Sum_probs=72.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHcC-CCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSD-QLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~-~~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
++|+|||+|.+|..+|..+.+.+ |.+|++||+.... .+..... .....+.+.. ........+++++++.|
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~L~ell~~s 237 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQ-------PVTWKRASSMEEVLREA 237 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEEECCCCchhhhhhhhhhcccccccccc-------cccccccCCHHHHHhhC
Confidence 47999999999999999986443 8999999987532 1110000 0000000000 00123345789999999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHh
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~ 143 (362)
|+|++++|-.. ++..+.. ++....++++.++|+.+--+.=..+.+.+.|++
T Consensus 238 DiV~lh~Plt~-----------~T~~lin--~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 238 DVISLHPVLDK-----------TTYHLIN--KERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred CEEEEeCCCCh-----------hhhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 99999987421 2222222 345567899999998663222223456666655
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=75.12 Aligned_cols=123 Identities=24% Similarity=0.317 Sum_probs=73.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|.+|.++|..|+....+.++.++|+++++.+.... ++.+...-. ...++..+.++++ ++++|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~--------DL~~~~~~~~~~~~i~~~~~y~~-~~~aD 71 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVAL--------DLSHAAAPLGSDVKITGDGDYED-LKGAD 71 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhc--------chhhcchhccCceEEecCCChhh-hcCCC
Confidence 6999999999999999999877566799999999554432211 111110000 0122333234655 99999
Q ss_pred EEEEeccCCCCCCCCCCC--CCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHH
Q 017997 81 IVFVSVNTPTKTQGLGAG--KAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~--~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~ 136 (362)
+|+++..-|..+ |+... -.-+.+.+++..+++.++.+ +.++++ -|.|..+.-.
T Consensus 72 iVvitAG~prKp-GmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlV-vtNPvD~~ty 126 (313)
T COG0039 72 IVVITAGVPRKP-GMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLV-VTNPVDILTY 126 (313)
T ss_pred EEEEeCCCCCCC-CCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEE-ecCcHHHHHH
Confidence 999998766543 32100 02233556666677777765 444433 3567665543
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.6e-05 Score=75.11 Aligned_cols=114 Identities=23% Similarity=0.352 Sum_probs=69.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~~ 78 (362)
+||+|||+|.+|.++|..|+.. |. ++.++|+++++++..... +.+... .. .+... ++++++ +++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~--~~~~el~L~D~~~~~~~g~~~D--------l~~~~~-~~-~~~~i~~~~~~~-~~~ 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ--GIADELVIIDINKEKAEGDAMD--------LSHAVP-FT-SPTKIYAGDYSD-CKD 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCCchhHHHHHH--------HHhhcc-cc-CCeEEEeCCHHH-hCC
Confidence 5899999999999999999988 66 899999998876654321 111000 00 12222 455654 999
Q ss_pred CcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
||+||++...|..+ | .++ ..+...+++..+.+.++.. +.++++-| .|..+
T Consensus 74 adivIitag~~~k~-g--~~R~dll~~N~~i~~~i~~~i~~~~~-~~~vivvs-NP~d~ 127 (315)
T PRK00066 74 ADLVVITAGAPQKP-G--ETRLDLVEKNLKIFKSIVGEVMASGF-DGIFLVAS-NPVDI 127 (315)
T ss_pred CCEEEEecCCCCCC-C--CCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEcc-CcHHH
Confidence 99999998876543 1 111 1122345555666666654 44544433 45443
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.1e-05 Score=74.26 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=68.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.+|..+|..+..- |.+|++||+.... .. ... ..+++++++.||+
T Consensus 148 ktvgIiG~G~IG~~va~~l~~f--g~~V~~~~~~~~~--~~----------------------~~~-~~~l~ell~~sDi 200 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQAL--GMKVLYAEHKGAS--VC----------------------REG-YTPFEEVLKQADI 200 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcC--CCEEEEECCCccc--cc----------------------ccc-cCCHHHHHHhCCE
Confidence 4899999999999999888665 8999999875210 00 001 1367888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|-..+ +..+. -+.....++++.++|+.+=-..=..+.|.+.|++.
T Consensus 201 v~l~~Plt~~-----------T~~li--~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g 250 (314)
T PRK06932 201 VTLHCPLTET-----------TQNLI--NAETLALMKPTAFLINTGRGPLVDEQALLDALENG 250 (314)
T ss_pred EEEcCCCChH-----------Hhccc--CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999884221 12221 13445668999999986643322345666667653
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.3e-05 Score=76.11 Aligned_cols=99 Identities=15% Similarity=0.064 Sum_probs=69.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+++|||+|.+|...+..+....+..+|.+||+++++.+.+.+.. ++ ..-.+..++++++++++||+
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~------------~~-~g~~v~~~~~~~eav~~aDi 195 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRA------------SD-YEVPVRAATDPREAVEGCDI 195 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------Hh-hCCcEEEeCCHHHHhccCCE
Confidence 479999999999998887776544689999999999988775421 00 01125667899999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
|++|+|+.. | +.. .+.+++++.|..-++..|+
T Consensus 196 VitaT~s~~----------P----~~~-----~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 196 LVTTTPSRK----------P----VVK-----ADWVSEGTHINAIGADAPG 227 (325)
T ss_pred EEEecCCCC----------c----Eec-----HHHcCCCCEEEecCCCCcc
Confidence 999987531 1 111 2346889888654544444
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.3e-05 Score=75.77 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=56.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|||+|.+|..++..+....+..+|++|+|++++.+.+.+.. ++ ....+...+++++++.+||+
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~------------~~-~g~~~~~~~~~~~av~~aDI 192 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAEL------------RA-QGFDAEVVTDLEAAVRQADI 192 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHH------------Hh-cCCceEEeCCHHHHHhcCCE
Confidence 479999999999999987765333689999999999988876521 00 01135667788888999999
Q ss_pred EEEeccCC
Q 017997 82 VFVSVNTP 89 (362)
Q Consensus 82 Vii~vptp 89 (362)
|+.|++.+
T Consensus 193 Vi~aT~s~ 200 (314)
T PRK06141 193 ISCATLST 200 (314)
T ss_pred EEEeeCCC
Confidence 98886643
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.3e-05 Score=77.06 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=71.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|||||+|.||..+|..+..- |.+|.+||+.... .+ .... ..++++.+++||+
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~--G~~V~~~dp~~~~-----~~------------------~~~~-~~~L~ell~~sDi 170 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEAL--GIKTLLCDPPRAD-----RG------------------DEGD-FRSLDELVQEADI 170 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCcccc-----cc------------------cccc-cCCHHHHHhhCCE
Confidence 5899999999999999999887 9999999964211 00 0011 2467888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|-..+ | ...+..+. -++....+++++++|+.|=-+.=..+.|.+.|++.
T Consensus 171 I~lh~PLt~~--g-----~~~T~~li--~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g 224 (378)
T PRK15438 171 LTFHTPLFKD--G-----PYKTLHLA--DEKLIRSLKPGAILINACRGAVVDNTALLTCLNEG 224 (378)
T ss_pred EEEeCCCCCC--c-----cccccccc--CHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhC
Confidence 9999874221 1 11112221 13455678999999987653333345666666653
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-05 Score=72.97 Aligned_cols=67 Identities=21% Similarity=0.349 Sum_probs=49.1
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~-~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
||||+|+|+ |.||..++..+.+. +++++++ +|+++++.... . ...+..++|+++++++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-~~~elvav~d~~~~~~~~~-~------------------~~~i~~~~dl~~ll~~ 60 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-EDLELVAAVDRPGSPLVGQ-G------------------ALGVAITDDLEAVLAD 60 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCcccccc-C------------------CCCccccCCHHHhccC
Confidence 689999998 99999999888764 3677665 78876654322 0 0124456788887778
Q ss_pred CcEEEEecc
Q 017997 79 ADIVFVSVN 87 (362)
Q Consensus 79 aDvVii~vp 87 (362)
+|+|+.++|
T Consensus 61 ~DvVid~t~ 69 (257)
T PRK00048 61 ADVLIDFTT 69 (257)
T ss_pred CCEEEECCC
Confidence 999998864
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.5e-05 Score=71.04 Aligned_cols=102 Identities=9% Similarity=0.116 Sum_probs=69.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|||+|.+|..+|..+..- |.+|++||+... .. ... ..+++++++.||+
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f--gm~V~~~~~~~~------~~-------------------~~~-~~~l~ell~~sDi 200 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF--GMRVLIGQLPGR------PA-------------------RPD-RLPLDELLPQVDA 200 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--CCEEEEECCCCC------cc-------------------ccc-ccCHHHHHHhCCE
Confidence 4799999999999999988765 999999998521 00 001 1257888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|-.. ++..+. -+.....++++.++|+.+=-+.=..+.|.+.|++.
T Consensus 201 v~l~lPlt~-----------~T~~li--~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 250 (317)
T PRK06487 201 LTLHCPLTE-----------HTRHLI--GARELALMKPGALLINTARGGLVDEQALADALRSG 250 (317)
T ss_pred EEECCCCCh-----------HHhcCc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 999988422 122221 13445668999999986643222345666667653
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.3e-05 Score=71.26 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=47.1
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEE-EeCC-HHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDIS-VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~-~d~~-~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
||||+|+| +|.||..++..+.+. +++++++ +|+. ++...+ ...++.. .....+.+++|+++...
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-~~~elvav~d~~~~~~~~~-----------~~~~~~~-~~~~gv~~~~d~~~l~~ 67 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-EGLQLVAAFERHGSSLQGT-----------DAGELAG-IGKVGVPVTDDLEAVET 67 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCccccCC-----------CHHHhcC-cCcCCceeeCCHHHhcC
Confidence 68999999 699999999999875 4787666 5743 322100 0000000 00112566788877545
Q ss_pred CCcEEEEecc
Q 017997 78 EADIVFVSVN 87 (362)
Q Consensus 78 ~aDvVii~vp 87 (362)
.+|+|+.|++
T Consensus 68 ~~DvVIdfT~ 77 (266)
T TIGR00036 68 DPDVLIDFTT 77 (266)
T ss_pred CCCEEEECCC
Confidence 7899999975
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2e-05 Score=63.95 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=46.7
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|+|+ |.||..++..+.+. +++++. ++|++++... | ....++... ....+.+++|+++++..+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-~~~~lv~~v~~~~~~~~----g------~d~g~~~~~-~~~~~~v~~~l~~~~~~~ 68 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-PGFELVGAVDRKPSAKV----G------KDVGELAGI-GPLGVPVTDDLEELLEEA 68 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-TTEEEEEEEETTTSTTT----T------SBCHHHCTS-ST-SSBEBS-HHHHTTH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCcEEEEEEecCCcccc----c------chhhhhhCc-CCcccccchhHHHhcccC
Confidence 79999999 99999999999984 388855 5577651110 0 111111100 112356778999988899
Q ss_pred cEEEEec
Q 017997 80 DIVFVSV 86 (362)
Q Consensus 80 DvVii~v 86 (362)
|++|-..
T Consensus 69 DVvIDfT 75 (124)
T PF01113_consen 69 DVVIDFT 75 (124)
T ss_dssp SEEEEES
T ss_pred CEEEEcC
Confidence 9999885
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.6e-05 Score=74.81 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=82.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE--ecCHHhhhc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF--STDVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~~ 77 (362)
||||-|||+|.+|.++|..|+++ | ++|++.||+.++++++...... .++. -.+.+ .....++++
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~--~d~~V~iAdRs~~~~~~i~~~~~~----~v~~-------~~vD~~d~~al~~li~ 67 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN--GDGEVTIADRSKEKCARIAELIGG----KVEA-------LQVDAADVDALVALIK 67 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHhhccc----ccee-------EEecccChHHHHHHHh
Confidence 79999999999999999999999 6 8999999999999998653211 0000 00111 122445688
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHH----------------HHhh-cCCCCEEEEeeCCccccHHHHHHH
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARV----------------IADV-SKSDKIVVEKSTVPVKTAEAIEKI 140 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~----------------i~~~-l~~~~iVv~~STv~~gt~~~l~~~ 140 (362)
+.|+||-|.|.+.+ .+.++.+++. +.+. -+.+.+++....+.||.+..+...
T Consensus 68 ~~d~VIn~~p~~~~-----------~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~ 136 (389)
T COG1748 68 DFDLVINAAPPFVD-----------LTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAY 136 (389)
T ss_pred cCCEEEEeCCchhh-----------HHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHHH
Confidence 99999999985432 2333333221 1111 123555666667888877655433
Q ss_pred HHhc-c-C--CCceEEeeCCccc
Q 017997 141 LTHN-S-K--GIKFQILSNPEFL 159 (362)
Q Consensus 141 l~~~-~-~--g~~~~v~~~Pe~~ 159 (362)
..++ . . ..+..++..|++-
T Consensus 137 a~~~~~~~i~si~iy~g~~g~~~ 159 (389)
T COG1748 137 AAKELFDEIESIDIYVGGLGEHG 159 (389)
T ss_pred HHHHhhccccEEEEEEecCCCCC
Confidence 2221 1 1 2344555666654
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.6e-05 Score=70.27 Aligned_cols=70 Identities=21% Similarity=0.352 Sum_probs=45.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|||+|.||..++..+.+. ++.++.++ +++ ...+...+. .......++|+++...+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-~~~~l~~v~~~~-~~~~~~~~~----------------~~~~~~~~~d~~~l~~~~ 62 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-PDLRVDWVIVPE-HSIDAVRRA----------------LGEAVRVVSSVDALPQRP 62 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-CCceEEEEEEcC-CCHHHHhhh----------------hccCCeeeCCHHHhccCC
Confidence 79999999999999999998875 35665554 332 111111110 001245677887643568
Q ss_pred cEEEEeccC
Q 017997 80 DIVFVSVNT 88 (362)
Q Consensus 80 DvVii~vpt 88 (362)
|+|++|.|+
T Consensus 63 DvVve~t~~ 71 (265)
T PRK13303 63 DLVVECAGH 71 (265)
T ss_pred CEEEECCCH
Confidence 999999764
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.1e-05 Score=73.10 Aligned_cols=71 Identities=20% Similarity=0.318 Sum_probs=55.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEe-CCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVD-ISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d-~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
.+|+||| .|.||.|||..|.++ |++|++|+ +++ +++++++.|
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~--g~tVtv~~~rT~----------------------------------~l~e~~~~A 202 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAA--NATVTIAHSRTR----------------------------------DLPAVCRRA 202 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhC--CCEEEEECCCCC----------------------------------CHHHHHhcC
Confidence 4899999 999999999999998 99999995 331 345668899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
|+||.|++.|.. +.+. .+++|++|++.++
T Consensus 203 DIVIsavg~~~~--------------v~~~------~lk~GavVIDvGi 231 (296)
T PRK14188 203 DILVAAVGRPEM--------------VKGD------WIKPGATVIDVGI 231 (296)
T ss_pred CEEEEecCChhh--------------cchh------eecCCCEEEEcCC
Confidence 999999986531 2221 2789999987543
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.8e-05 Score=72.01 Aligned_cols=116 Identities=16% Similarity=0.262 Sum_probs=68.7
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCC-------eEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDISVSR--INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTD 71 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~-------~V~~~d~~~~~--~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (362)
+||+|||+ |.+|.++|..|+.. |. ++.++|++++. ++...- ++...... ...+.+.+++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~--~~~~~~~~~el~L~Di~~~~~~a~g~a~--------Dl~~~~~~-~~~~~~i~~~ 71 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG--EMFGPDQPVILQLLELPQALKALEGVAM--------ELEDCAFP-LLAEIVITDD 71 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc--cccCCCCceEEEEEecCCcccccceeeh--------hhhhcccc-ccCceEEecC
Confidence 69999999 99999999999977 44 79999995432 322111 01100000 0112334444
Q ss_pred HHhhhcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 72 VEKHVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 72 ~~~a~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
..+++++||+||++-..|... | .++ ..+.+.+++..+.|.++.+++.++++-| .|..
T Consensus 72 ~~~~~~daDivvitaG~~~k~-g--~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs-NPvD 132 (322)
T cd01338 72 PNVAFKDADWALLVGAKPRGP-G--MERADLLKANGKIFTAQGKALNDVASRDVKVLVVG-NPCN 132 (322)
T ss_pred cHHHhCCCCEEEEeCCCCCCC-C--CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec-CcHH
Confidence 344599999999998876543 2 111 1123446667777777765455555544 4443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.5e-05 Score=69.25 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=38.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+|.|||+|.+|.++|..|.+. ||+|+++|+|+++++...+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~~~~~~~~ 41 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEERVEEFLA 41 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHHHHHHHhh
Confidence 7999999999999999999999 9999999999999988443
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.3e-05 Score=70.83 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=70.4
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCC-----eEEEEeCCHH--HHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCH
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSI-----EVAVVDISVS--RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDV 72 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~-----~V~~~d~~~~--~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~ 72 (362)
++||+|||+ |.+|.++|..|+..+--- ++.++|+++. +++.... ++.+..... ..+.+.+++.
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~--------Dl~~~~~~~-~~~~~i~~~~ 74 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVM--------ELDDCAFPL-LAGVVITDDP 74 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeeh--------hhhhhhhhh-cCCcEEecCh
Confidence 369999998 999999999988752112 7999999642 2322111 111111000 1123444444
Q ss_pred HhhhcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 73 EKHVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 73 ~~a~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
.+++++||+||++-..|... | .++ ..+.+.+++..+.|.++.+++.++++-| .|....
T Consensus 75 y~~~~daDiVVitaG~~~k~-g--~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs-NPvDv~ 136 (326)
T PRK05442 75 NVAFKDADVALLVGARPRGP-G--MERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG-NPANTN 136 (326)
T ss_pred HHHhCCCCEEEEeCCCCCCC-C--CcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC-CchHHH
Confidence 45599999999998765433 2 111 1122445666777777766666665544 555443
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00014 Score=61.20 Aligned_cols=91 Identities=19% Similarity=0.183 Sum_probs=57.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH-HHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRIN-AWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~-~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+++.|+|-|.+|..+|..|... |-+|+++|+||-+.- +..+| ++.. +.++++..+|
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~--Ga~V~V~e~DPi~alqA~~dG--------------------f~v~-~~~~a~~~ad 80 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL--GARVTVTEIDPIRALQAAMDG--------------------FEVM-TLEEALRDAD 80 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT--T-EEEEE-SSHHHHHHHHHTT---------------------EEE--HHHHTTT-S
T ss_pred CEEEEeCCCcccHHHHHHHhhC--CCEEEEEECChHHHHHhhhcC--------------------cEec-CHHHHHhhCC
Confidence 4789999999999999999998 999999999996543 33332 4443 5778899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
++|.++.... ..+ .+..+.++++.+|.+....+..
T Consensus 81 i~vtaTG~~~---------vi~--------~e~~~~mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 81 IFVTATGNKD---------VIT--------GEHFRQMKDGAILANAGHFDVE 115 (162)
T ss_dssp EEEE-SSSSS---------SB---------HHHHHHS-TTEEEEESSSSTTS
T ss_pred EEEECCCCcc---------ccC--------HHHHHHhcCCeEEeccCcCcee
Confidence 9999976421 011 2333457889988765544433
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.9e-05 Score=70.32 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=68.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+++.|+|+|.+|.+++..|++. |++|++++|++++.+.+.+.... .+.....+..+....++|+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~--g~~v~v~~R~~~~~~~la~~~~~--------------~~~~~~~~~~~~~~~~~Di 181 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA--DCNVIIANRTVSKAEELAERFQR--------------YGEIQAFSMDELPLHRVDL 181 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHhh--------------cCceEEechhhhcccCccE
Confidence 4799999999999999999998 89999999999988877542100 0112222211122458999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
||-|+|.....+. ....+. ...++++.+|++.++.|+.|
T Consensus 182 vInatp~gm~~~~----~~~~~~---------~~~l~~~~~v~D~~y~p~~T 220 (270)
T TIGR00507 182 IINATSAGMSGNI----DEPPVP---------AEKLKEGMVVYDMVYNPGET 220 (270)
T ss_pred EEECCCCCCCCCC----CCCCCC---------HHHcCCCCEEEEeccCCCCC
Confidence 9999875422100 000110 13467888999999988877
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.6e-05 Score=70.11 Aligned_cols=71 Identities=24% Similarity=0.353 Sum_probs=53.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..++..|...+ +++|+++|+++++.+.+.+.. .......++..+++.++|+
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~----------------g~~~~~~~~~~~~l~~aDv 241 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKEL----------------GGNAVPLDELLELLNEADV 241 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHc----------------CCeEEeHHHHHHHHhcCCE
Confidence 68999999999999999998852 478999999999887765421 0111111345566889999
Q ss_pred EEEeccCC
Q 017997 82 VFVSVNTP 89 (362)
Q Consensus 82 Vii~vptp 89 (362)
||.|++.|
T Consensus 242 Vi~at~~~ 249 (311)
T cd05213 242 VISATGAP 249 (311)
T ss_pred EEECCCCC
Confidence 99998865
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0001 Score=64.60 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=50.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+|++||+|.+|..+...+-..-..+ .|.+||++.+++..+.+.. ..+.++++++.+++.|
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~------------------~~~~~s~ide~~~~~D 62 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV------------------GRRCVSDIDELIAEVD 62 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc------------------CCCccccHHHHhhccc
Confidence 79999999999998887665420013 5889999999998776531 1123478888789999
Q ss_pred EEEEec
Q 017997 81 IVFVSV 86 (362)
Q Consensus 81 vVii~v 86 (362)
+++.|-
T Consensus 63 lvVEaA 68 (255)
T COG1712 63 LVVEAA 68 (255)
T ss_pred eeeeeC
Confidence 999995
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.9e-05 Score=70.43 Aligned_cols=114 Identities=21% Similarity=0.333 Sum_probs=68.6
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-c--CHHhhhc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-T--DVEKHVS 77 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~--d~~~a~~ 77 (362)
|||+|||+ |.+|.++|..|+..+.-.++.++|++ +.+ |.. .++.+. .....++.+ . |+.++++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~----g~a----lDL~~~---~~~~~i~~~~~~~~~y~~~~ 67 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTP----GVA----ADLSHI---NTPAKVTGYLGPEELKKALK 67 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccc----eee----hHhHhC---CCcceEEEecCCCchHHhcC
Confidence 79999999 99999999999887212489999998 221 110 001110 001235542 2 3334599
Q ss_pred CCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
+||+||++...|..+ |. +| ..+.+.+++..+.|.++. ++.++++- |.|..+
T Consensus 68 daDivvitaG~~~k~-g~--tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivv-tNPvDv 122 (310)
T cd01337 68 GADVVVIPAGVPRKP-GM--TRDDLFNINAGIVRDLATAVAKAC-PKALILII-SNPVNS 122 (310)
T ss_pred CCCEEEEeCCCCCCC-CC--CHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEc-cCchhh
Confidence 999999999877543 21 11 122345566667777774 55555443 455544
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.92 E-value=8.9e-05 Score=70.16 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=70.4
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCC-------eEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTD 71 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~-------~V~~~d~~~--~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (362)
.||+|||+ |.+|.++|..|... |. ++.++|+++ ++++..... +.+.... ...+...+++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~--~~~~~~~~~el~L~Di~~~~~~a~g~a~D--------l~~~~~~-~~~~~~i~~~ 72 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG--ELFGKDQPVVLHLLDIPPAMKALEGVAME--------LEDCAFP-LLAGVVATTD 72 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC--CcccCCCccEEEEEecCCcccccchHHHH--------Hhhcccc-ccCCcEEecC
Confidence 59999998 99999999999887 53 899999964 323322110 0000000 0012233333
Q ss_pred HHhhhcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 72 VEKHVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 72 ~~~a~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
..+++++||+||++-..|... | .++ ..+.+.+++..++|.++.+++.++++-| .|....
T Consensus 73 ~~~~~~daDvVVitAG~~~k~-g--~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs-NPvDv~ 135 (323)
T TIGR01759 73 PEEAFKDVDAALLVGAFPRKP-G--MERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG-NPANTN 135 (323)
T ss_pred hHHHhCCCCEEEEeCCCCCCC-C--CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC-CcHHHH
Confidence 334599999999998876433 2 111 1123456777778888776466665443 555443
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0001 Score=60.22 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=65.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|.+||+| -|..+|..|++. |++|+++|++++.++.+++....... +.+ +..+++ ..+++|+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~~~~v~------------dDl-f~p~~~-~y~~a~l 80 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLGLNAFV------------DDL-FNPNLE-IYKNAKL 80 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhCCeEEE------------CcC-CCCCHH-HHhcCCE
Confidence 579999999 998899999998 99999999999999987764322110 111 223333 3789999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEE
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV 124 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv 124 (362)
|.-+=|+| .+...+-.+++.+..+-+|.
T Consensus 81 iysirpp~---------------el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 81 IYSIRPPR---------------DLQPFILELAKKINVPLIIK 108 (134)
T ss_pred EEEeCCCH---------------HHHHHHHHHHHHcCCCEEEE
Confidence 99997743 24566667777776655554
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.8e-05 Score=70.76 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=55.8
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|||. |.||.|||..|.++ |++|++|... |.++++.+++||
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~--gatVtv~~s~---------------------------------t~~l~~~~~~AD 203 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDK--NATVTLTHSR---------------------------------TRNLAEVARKAD 203 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhhCC
Confidence 47999999 99999999999999 9999998311 125666789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
+||.|++.|.. +.. ..++++++||+.|+
T Consensus 204 IVI~avg~~~~--------------v~~------~~ik~GavVIDvgi 231 (284)
T PRK14179 204 ILVVAIGRGHF--------------VTK------EFVKEGAVVIDVGM 231 (284)
T ss_pred EEEEecCcccc--------------CCH------HHccCCcEEEEecc
Confidence 99999987632 122 22789999987553
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00035 Score=67.88 Aligned_cols=89 Identities=16% Similarity=0.137 Sum_probs=64.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+....... + +.. .+.+++++.+|+
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~~------------------G-~~v-~~leeal~~aDV 253 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAMD------------------G-FRV-MTMEEAAKIGDI 253 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHhc------------------C-CEe-CCHHHHHhcCCE
Confidence 4799999999999999999887 89999999998765433321 1 222 234567889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHH-HHHhhcCCCCEEEEeeCCc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR-VIADVSKSDKIVVEKSTVP 130 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~-~i~~~l~~~~iVv~~STv~ 130 (362)
||.+++++ .+++ .....++++.++++.+-.+
T Consensus 254 VItaTG~~------------------~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 254 FITATGNK------------------DVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCcEEEEECCCC
Confidence 99986642 2232 3556788999998866544
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.8e-05 Score=73.30 Aligned_cols=88 Identities=17% Similarity=0.099 Sum_probs=63.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+....... .... .+++++++.+|+
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~~-------------------G~~~-~~leell~~ADI 312 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAME-------------------GYQV-VTLEDVVETADI 312 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHhc-------------------Ccee-ccHHHHHhcCCE
Confidence 4799999999999999999887 89999999998765332211 1222 356777899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhcCCCCEEEEeeCC
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~-~~i~~~l~~~~iVv~~STv 129 (362)
|++|+.++. .+ ....+.++++.++++.+-.
T Consensus 313 VI~atGt~~------------------iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 313 FVTATGNKD------------------IITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred EEECCCccc------------------ccCHHHHhccCCCcEEEEcCCC
Confidence 999975431 12 2445567899999885443
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00014 Score=69.10 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=55.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+++|||+|.+|...+..++...+-.+|.+|++++++.+++.+.. +......+...+++++++.++|+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~------------~~~~~~~~~~~~~~~~~~~~aDi 195 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEI------------QSKFNTEIYVVNSADEAIEEADI 195 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHH------------HHhcCCcEEEeCCHHHHHhcCCE
Confidence 479999999999988877764322358999999999988776421 00001124556788888999999
Q ss_pred EEEeccCC
Q 017997 82 VFVSVNTP 89 (362)
Q Consensus 82 Vii~vptp 89 (362)
|+.|+|++
T Consensus 196 Vi~aT~s~ 203 (325)
T PRK08618 196 IVTVTNAK 203 (325)
T ss_pred EEEccCCC
Confidence 99997754
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.6e-05 Score=62.30 Aligned_cols=71 Identities=25% Similarity=0.349 Sum_probs=54.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCE--EEecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNL--FFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~-V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l--~~t~d~~~a~~~ 78 (362)
.++.|||+|.+|..++..|+.. |.+ |++++|+.++.+.+.+.. ....+ ...++..+.+.+
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~--g~~~i~i~nRt~~ra~~l~~~~---------------~~~~~~~~~~~~~~~~~~~ 75 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAAL--GAKEITIVNRTPERAEALAEEF---------------GGVNIEAIPLEDLEEALQE 75 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHT--TSSEEEEEESSHHHHHHHHHHH---------------TGCSEEEEEGGGHCHHHHT
T ss_pred CEEEEECCHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHc---------------CccccceeeHHHHHHHHhh
Confidence 4799999999999999999999 765 999999999999887521 00112 233455566889
Q ss_pred CcEEEEeccCC
Q 017997 79 ADIVFVSVNTP 89 (362)
Q Consensus 79 aDvVii~vptp 89 (362)
+|+||-|+|.+
T Consensus 76 ~DivI~aT~~~ 86 (135)
T PF01488_consen 76 ADIVINATPSG 86 (135)
T ss_dssp ESEEEE-SSTT
T ss_pred CCeEEEecCCC
Confidence 99999998765
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00015 Score=70.79 Aligned_cols=89 Identities=13% Similarity=0.096 Sum_probs=65.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+....... .... .+.+++++.+|+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~~-------------------G~~v-~~l~eal~~aDV 270 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAMD-------------------GFRV-MTMEEAAELGDI 270 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHhc-------------------CCEe-cCHHHHHhCCCE
Confidence 4799999999999999999988 89999999998775433221 1222 245677889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHH-HHHhhcCCCCEEEEeeCCc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR-VIADVSKSDKIVVEKSTVP 130 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~-~i~~~l~~~~iVv~~STv~ 130 (362)
||.|++++ .+++ .....++++.++++.+-.+
T Consensus 271 VI~aTG~~------------------~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 271 FVTATGNK------------------DVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCCEEEEcCCCC
Confidence 99997542 2232 4566788999988755443
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00017 Score=68.01 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=67.2
Q ss_pred ceEEEEcC-ChhHHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHhhhcCCCEEE--ecCHHhhh
Q 017997 2 VKICCIGA-GYVGGPTMAVIAL-KCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFF--STDVEKHV 76 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~-~~~G~~V~~~d~~~~~~~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~ 76 (362)
|||+|||+ |.+|..++..+.. ...+++++++|+++.. .+. ..+.+.. ....++. .+++.+++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-----~g~alDl~~~~--------~~~~i~~~~~~d~~~~l 67 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-----PGVAVDLSHIP--------TAVKIKGFSGEDPTPAL 67 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-----cceehhhhcCC--------CCceEEEeCCCCHHHHc
Confidence 89999999 9999999988855 2225799999997532 110 0111000 0012332 35655668
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d-----~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~ 135 (362)
+++|+||+|...+.... .+ +.| .+.+++.++.+.++ .++.+|++ .|.|..+.-
T Consensus 68 ~~~DiVIitaG~~~~~~---~~-R~dll~~N~~i~~~ii~~i~~~-~~~~iviv-vsNP~D~~t 125 (312)
T PRK05086 68 EGADVVLISAGVARKPG---MD-RSDLFNVNAGIVKNLVEKVAKT-CPKACIGI-ITNPVNTTV 125 (312)
T ss_pred CCCCEEEEcCCCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHh-CCCeEEEE-ccCchHHHH
Confidence 99999999998865431 01 111 12344455555555 35555544 567775543
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00012 Score=70.68 Aligned_cols=105 Identities=19% Similarity=0.273 Sum_probs=68.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+|.|+|+|.+|...+..+... |.+|+++|+++++.+.+.+.. ..+.. ...-..++.+.++++|+
T Consensus 169 ~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~g~~v~~-------------~~~~~~~l~~~l~~aDv 233 (370)
T TIGR00518 169 DVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEFGGRIHT-------------RYSNAYEIEDAVKRADL 233 (370)
T ss_pred eEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcCceeEe-------------ccCCHHHHHHHHccCCE
Confidence 699999999999999999988 889999999999888765421 00000 00001234556789999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
||.|++.|... .+-+ +.++....++++.+|++-+.-+.|..
T Consensus 234 VI~a~~~~g~~-------~p~l-----it~~~l~~mk~g~vIvDva~d~GG~~ 274 (370)
T TIGR00518 234 LIGAVLIPGAK-------APKL-----VSNSLVAQMKPGAVIVDVAIDQGGCV 274 (370)
T ss_pred EEEccccCCCC-------CCcC-----cCHHHHhcCCCCCEEEEEecCCCCCc
Confidence 99998543221 1111 11333455688888888775555554
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00019 Score=67.74 Aligned_cols=117 Identities=22% Similarity=0.266 Sum_probs=65.8
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCH---Hhhh
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDV---EKHV 76 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~---~~a~ 76 (362)
|+||+|||+ |.+|..+|..|+..+...++.++|++...-+.+ . +.+.. ..-.+..++|. .+++
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~-----D-----l~~~~---~~~~v~~~td~~~~~~~l 74 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAA-----D-----LSHID---TPAKVTGYADGELWEKAL 74 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCccccc-----c-----hhhcC---cCceEEEecCCCchHHHh
Confidence 579999999 999999999998653246899999932111100 0 00000 00124433331 4569
Q ss_pred cCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~ 135 (362)
+++|+||++...|... + .++ ..+.+.+++.++.+.++ .++.+|+ .+|.|....-
T Consensus 75 ~gaDvVVitaG~~~~~-~--~tR~dll~~N~~i~~~i~~~i~~~-~~~~ivi-v~SNPvdv~~ 132 (321)
T PTZ00325 75 RGADLVLICAGVPRKP-G--MTRDDLFNTNAPIVRDLVAAVASS-APKAIVG-IVSNPVNSTV 132 (321)
T ss_pred CCCCEEEECCCCCCCC-C--CCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEE-EecCcHHHHH
Confidence 9999999999876542 1 000 01112333444445444 3455554 4666666543
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00019 Score=69.83 Aligned_cols=87 Identities=16% Similarity=0.105 Sum_probs=64.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|+|+|.+|..+|..+... |.+|+++|+++.+.+....- + ... .+.++++..+|+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~~------------------G-~~~-~~~~e~v~~aDV 260 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAME------------------G-YEV-MTMEEAVKEGDI 260 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHhc------------------C-CEE-ccHHHHHcCCCE
Confidence 3799999999999999998888 88999999999887765431 1 222 234566789999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhcCCCCEEEEeeC
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKST 128 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~-~~i~~~l~~~~iVv~~ST 128 (362)
||.|++++ .++ ......++++.++++.+.
T Consensus 261 VI~atG~~------------------~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 261 FVTTTGNK------------------DIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCcEEEEeCC
Confidence 99997642 123 234567889988877653
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00033 Score=67.59 Aligned_cols=120 Identities=13% Similarity=0.202 Sum_probs=71.6
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCC-CC----eEEEE--eCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCP-SI----EVAVV--DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~-G~----~V~~~--d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (362)
-||+|||+ |.+|..+|..|+..+- +. .+.++ |+++++++...-. +.+...... .++..+++..
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~D--------L~d~a~~~~-~~v~i~~~~y 115 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAME--------LEDSLYPLL-REVSIGIDPY 115 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHH--------HHHhhhhhc-CceEEecCCH
Confidence 48999999 9999999999987621 11 34444 8888877654321 111110011 2355444444
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
+++++||+||++-..|..+ | .+| ..+.+.+++..+.|.++.+++.+|++-| .|..+.
T Consensus 116 ~~~kdaDIVVitAG~prkp-g--~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs-NPvDv~ 176 (387)
T TIGR01757 116 EVFEDADWALLIGAKPRGP-G--MERADLLDINGQIFADQGKALNAVASKNCKVLVVG-NPCNTN 176 (387)
T ss_pred HHhCCCCEEEECCCCCCCC-C--CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC-CcHHHH
Confidence 4599999999998876433 2 111 1123445666677777766677665544 555443
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00014 Score=68.34 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=68.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+++|||+|.+|...+..++...+-.+|.+|++++++.+++.+... + ..-.+. .++.++++.++|+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~------------~-~~~~~~-~~~~~~av~~aDi 191 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHAR------------A-LGPTAE-PLDGEAIPEAVDL 191 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH------------h-cCCeeE-ECCHHHHhhcCCE
Confidence 4799999999999999999763223589999999999888765210 0 001122 4678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
|+.|+|++. ++. . ..+++++.|..-++..|+..
T Consensus 192 VitaT~s~~--------------Pl~---~---~~~~~g~hi~~iGs~~p~~~ 224 (304)
T PRK07340 192 VVTATTSRT--------------PVY---P---EAARAGRLVVAVGAFTPDMA 224 (304)
T ss_pred EEEccCCCC--------------cee---C---ccCCCCCEEEecCCCCCCcc
Confidence 999987542 111 1 12578888876555555543
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00027 Score=66.36 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=58.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+++|||+|..|...+..++.-.+=.+|.+|+|++++.+++.+.. ++.....+...+++++++.+||+
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~------------~~~~~~~v~~~~~~~eav~~aDI 185 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERF------------SKEFGVDIRPVDNAEAALRDADT 185 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------HHhcCCcEEEeCCHHHHHhcCCE
Confidence 479999999999999998887644568999999999998876421 00001236777899999999999
Q ss_pred EEEeccC
Q 017997 82 VFVSVNT 88 (362)
Q Consensus 82 Vii~vpt 88 (362)
|+.|+++
T Consensus 186 V~taT~s 192 (301)
T PRK06407 186 ITSITNS 192 (301)
T ss_pred EEEecCC
Confidence 9999764
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0002 Score=70.37 Aligned_cols=70 Identities=26% Similarity=0.318 Sum_probs=53.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|||+|.||..++..|... | .+|+++++++++.+.+.+.. ........+..+++.++|
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~--G~~~V~v~~rs~~ra~~la~~~----------------g~~~i~~~~l~~~l~~aD 242 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRK--GVGKILIANRTYERAEDLAKEL----------------GGEAVKFEDLEEYLAEAD 242 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHc----------------CCeEeeHHHHHHHHhhCC
Confidence 4799999999999999999988 7 79999999998877665420 011111234556688999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.|++.|
T Consensus 243 vVi~aT~s~ 251 (417)
T TIGR01035 243 IVISSTGAP 251 (417)
T ss_pred EEEECCCCC
Confidence 999998765
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00036 Score=63.44 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=48.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC-CCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh-hcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC-PSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH-VSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~-~G~~-V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~ 78 (362)
+||+|||+|+||..++..+.+.. ++++ +.++|+++++.+.+... ....+|+++. ...
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------------------~~~~~~l~~ll~~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------------------VALLDGLPGLLAWR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------------------CcccCCHHHHhhcC
Confidence 69999999999999999987631 1354 44578888777766542 2345677774 578
Q ss_pred CcEEEEecc
Q 017997 79 ADIVFVSVN 87 (362)
Q Consensus 79 aDvVii~vp 87 (362)
+|+|+.|-+
T Consensus 63 ~DlVVE~A~ 71 (267)
T PRK13301 63 PDLVVEAAG 71 (267)
T ss_pred CCEEEECCC
Confidence 999999954
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00024 Score=67.83 Aligned_cols=86 Identities=20% Similarity=0.255 Sum_probs=55.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcC-CCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSD-QLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
|+||+|+|+|.||..++..+.+. ++++++++ |++++....+.+. +.+.+.+ ..+.........+....++++.+.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-~d~eLvav~d~~~~~~~~la~~~G~~~~~~-~~~~~~~~~~~~i~V~~~~~el~~~ 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-PDMELVGVAKTKPDYEARVAVEKGYPLYVA-DPEREKAFEEAGIPVAGTIEDLLEK 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-CCcEEEEEECCChHHHHHHHHhcCCCcccc-CccccccccCCceEEcCChhHhhcc
Confidence 68999999999999999888865 57887765 6677666554431 1222211 1110100011246677777777789
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
+|+||.|+|.
T Consensus 79 vDVVIdaT~~ 88 (341)
T PRK04207 79 ADIVVDATPG 88 (341)
T ss_pred CCEEEECCCc
Confidence 9999999763
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.9e-05 Score=61.39 Aligned_cols=95 Identities=24% Similarity=0.321 Sum_probs=54.8
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec-CHHhhhcCC
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKHVSEA 79 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~-~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~~a 79 (362)
||+|+| .|++|..+...|+++ |.++++. +.++++.-..+....... .+ ...+.+.+ +.++ +.++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p~~e~~~~~~~~~~~g~~~~~~~~~~--~~---------~~~~~~~~~~~~~-~~~~ 67 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-PDFELVALVSSSRSAGKPLSEVFPHP--KG---------FEDLSVEDADPEE-LSDV 67 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-STEEEEEEEESTTTTTSBHHHTTGGG--TT---------TEEEBEEETSGHH-HTTE
T ss_pred CEEEECCCCHHHHHHHHHHhcC-CCccEEEeeeeccccCCeeehhcccc--cc---------ccceeEeecchhH-hhcC
Confidence 799999 999999999999986 5677555 455431222222211000 00 01233433 4444 7999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
|+||.|+|.. ...+.... .++.+..||+.|.
T Consensus 68 Dvvf~a~~~~---------------~~~~~~~~---~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 68 DVVFLALPHG---------------ASKELAPK---LLKAGIKVIDLSG 98 (121)
T ss_dssp SEEEE-SCHH---------------HHHHHHHH---HHHTTSEEEESSS
T ss_pred CEEEecCchh---------------HHHHHHHH---HhhCCcEEEeCCH
Confidence 9999997731 11233332 3467778887664
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0002 Score=70.37 Aligned_cols=87 Identities=22% Similarity=0.134 Sum_probs=63.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH-HHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRIN-AWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~-~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+.. ....| +.. .+.+++++.+|
T Consensus 255 KtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~~G--------------------~~v-v~leEal~~AD 311 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALMEG--------------------YQV-LTLEDVVSEAD 311 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHhcC--------------------Cee-ccHHHHHhhCC
Confidence 4799999999999999999877 899999999987643 33322 222 24567788999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
+||.|.++.. + +.+.....++++.++++.+-
T Consensus 312 VVI~tTGt~~---------------v--I~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 312 IFVTTTGNKD---------------I--IMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EEEECCCCcc---------------c--hHHHHHhcCCCCCEEEEcCC
Confidence 9998765421 0 12445567899999988665
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00048 Score=67.60 Aligned_cols=120 Identities=12% Similarity=0.195 Sum_probs=73.0
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHc-------CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALK-------CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~-------~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (362)
-||+|||+ |.+|..+|..|+.. +--.+++++|+++++++...-. +.+...-. ..++..+++..
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amD--------L~daa~~~-~~~v~i~~~~y 171 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAME--------LEDSLYPL-LREVSIGIDPY 171 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHH--------HHHhhhhh-cCceEEecCCH
Confidence 48999999 99999999999875 2124799999999887654321 11111001 12355444434
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
+++++||+||++-..|... |+ ++ ..+.+.+++..+.|.++..++.+|++-| .|..+.
T Consensus 172 e~~kdaDiVVitAG~prkp-G~--tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs-NPvDv~ 232 (444)
T PLN00112 172 EVFQDAEWALLIGAKPRGP-GM--ERADLLDINGQIFAEQGKALNEVASRNVKVIVVG-NPCNTN 232 (444)
T ss_pred HHhCcCCEEEECCCCCCCC-CC--CHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC-CcHHHH
Confidence 4599999999998876533 21 11 1123445666666666445566665544 555443
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00018 Score=68.20 Aligned_cols=122 Identities=17% Similarity=0.238 Sum_probs=70.8
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcC-----CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKC-----PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~-----~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
.||+|+|+ |++|..++..|+..+ .+.+|.++|+++.. +.+ .+. ..++.+.... ..++++.+.++.++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~~-~g~----~~Dl~d~~~~-~~~~~~~~~~~~~~ 75 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KAL-EGV----VMELQDCAFP-LLKSVVATTDPEEA 75 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-ccc-cce----eeehhhcccc-ccCCceecCCHHHH
Confidence 58999999 999999999998751 13589999996531 111 110 0011110000 01244556676567
Q ss_pred hcCCcEEEEeccCCCCCCCCC--CCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 76 VSEADIVFVSVNTPTKTQGLG--AGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~--~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
+++||+||++...|... +.. +-...+.+.+++..+.|.++.+++.++++-| .|..
T Consensus 76 l~~aDiVI~tAG~~~~~-~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs-NPvD 132 (325)
T cd01336 76 FKDVDVAILVGAMPRKE-GMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG-NPAN 132 (325)
T ss_pred hCCCCEEEEeCCcCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec-CcHH
Confidence 99999999998765432 110 0001233445666677777766666665544 3443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00025 Score=67.21 Aligned_cols=119 Identities=18% Similarity=0.253 Sum_probs=69.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCC-----CCeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCP-----SIEVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~-----G~~V~~~d~~~--~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (362)
.||+|+|+ |.+|..+|..|+..+- .+++.++|+++ ++.+.... ++.+..... ......+++..
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~--------Dl~d~~~~~-~~~~~i~~~~~ 71 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVM--------ELQDCAFPL-LKGVVITTDPE 71 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeee--------ehhhhcccc-cCCcEEecChH
Confidence 38999999 9999999999987521 12599999987 43322111 111110000 11223434445
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
+++++||+||++-..|... | .++ ..+.+.+++..+.|.++.+++.++++- |.|...
T Consensus 72 ~~~~~aDiVVitAG~~~~~-g--~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 131 (323)
T cd00704 72 EAFKDVDVAILVGAFPRKP-G--MERADLLRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANT 131 (323)
T ss_pred HHhCCCCEEEEeCCCCCCc-C--CcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHH
Confidence 6699999999998876443 2 111 112344566667777775455555443 355443
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00017 Score=58.25 Aligned_cols=98 Identities=22% Similarity=0.316 Sum_probs=57.6
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-cCHHhhhcCC
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVSEA 79 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~a 79 (362)
||+|+| .|.+|..++..|... +++++..+ ++++++-+.+......+.. .. ...++ .+.+ ..++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-~~~~l~av~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~--~~~~ 66 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-PDFEVVALAASARSAGKRVSEAGPHLKG-----EV------VLELEPEDFE--ELAV 66 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-CCceEEEEEechhhcCcCHHHHCccccc-----cc------ccccccCChh--hcCC
Confidence 689999 599999998888875 37888777 6554333222221100000 00 00111 2222 2589
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCC
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv 129 (362)
|+||+|+|... ..+.+..+.+.+.++++|++.|+.
T Consensus 67 DvV~~~~~~~~---------------~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 67 DIVFLALPHGV---------------SKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred CEEEEcCCcHH---------------HHHHHHHHHhhhcCCCEEEECCcc
Confidence 99999988431 234444455566889999987763
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0086 Score=57.24 Aligned_cols=230 Identities=13% Similarity=0.114 Sum_probs=134.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH----HHHcCCCCCCCCChHHHHhhhcCCCEE---EecCHH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRIN----AWNSDQLPIYEPGLDGVVKQCRGKNLF---FSTDVE 73 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~----~l~~~~~~~~e~~l~~~~~~~~~~~l~---~t~d~~ 73 (362)
|.+|-|+|.|.++.-+|..|-+.+ .++|=.+.|...+-+ .++++...+...--.+..+ ...|..+ +..+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~-~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~-~l~G~~~id~~~~~~~ 78 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHG-NCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQ-ALSGECTIDHVFQDYE 78 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhcc-CceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhh-hhcCeEEhhHhhcCHH
Confidence 668999999999999999998873 346777887655444 4444221111110011111 1233332 345677
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-cC-CCCEEEEeeCCccccHHHHHHHHHhccCCCceE
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-SK-SDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQ 151 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~-l~-~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~ 151 (362)
+...+-|.+|+|||+. +-.+++++|... ++ -.++|.+++|+ |+...++..+.+... +..
T Consensus 79 ~i~g~WdtlILavtaD---------------AY~~VL~ql~~~~L~~vk~iVLvSPtf--GS~~lv~~~l~~~~~--~~E 139 (429)
T PF10100_consen 79 EIEGEWDTLILAVTAD---------------AYLDVLQQLPWEVLKRVKSIVLVSPTF--GSHLLVKGFLNDLGP--DAE 139 (429)
T ss_pred HhcccccEEEEEechH---------------HHHHHHHhcCHHHHhhCCEEEEECccc--chHHHHHHHHHhcCC--Cce
Confidence 7778999999998853 235667666542 22 25677776666 333445555655432 222
Q ss_pred Eee-----CCcccccCc---cccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHH--------
Q 017997 152 ILS-----NPEFLAEGT---AIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELS-------- 215 (362)
Q Consensus 152 v~~-----~Pe~~~~g~---a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~-------- 215 (362)
|++ +--+...+. ..-...--.+|.+|+... +...+.+++.+++.++. ......++-.||.-
T Consensus 140 VISFStY~gdTr~~d~~~~~~vlt~~vK~kiYigSt~~--~s~~~~~l~~~~~~~gI-~~~~~~~pl~AE~rNislYVHp 216 (429)
T PF10100_consen 140 VISFSTYYGDTRWSDGEQPNRVLTTAVKKKIYIGSTHS--NSPELDKLCRLLAQLGI-QLEVMDNPLEAESRNISLYVHP 216 (429)
T ss_pred EEEeecccccceeccCCCcceehhhhhhceEEEEeCCC--CChHHHHHHHHHHHcCC-eEEEeCChHhhhhcccceecCC
Confidence 222 111111111 110001112577886643 35678899999999863 23334567777742
Q ss_pred -----HHHHh-----------------------HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 017997 216 -----KLAAN-----------------------AFLAQRISSVNAMSALCEATGANVSQVAFAVGTD 254 (362)
Q Consensus 216 -----Kl~~N-----------------------~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~ 254 (362)
++.-| ....-+.....|++.+..++|++.-.+++.++-|
T Consensus 217 plfmndfsL~aIF~~~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~dd 283 (429)
T PF10100_consen 217 PLFMNDFSLNAIFEEDGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDD 283 (429)
T ss_pred hHhhChhhHHHHhCCCCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccC
Confidence 11111 1234466889999999999999999999999875
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0005 Score=67.38 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=54.4
Q ss_pred ceEEEEcCChhHHH-HHHHHHHc---CCCCeEEEEeCC-HHHHHHHHcCCCCCCCCChHHHHhhhc-CCCEEEecCHHhh
Q 017997 2 VKICCIGAGYVGGP-TMAVIALK---CPSIEVAVVDIS-VSRINAWNSDQLPIYEPGLDGVVKQCR-GKNLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~---~~G~~V~~~d~~-~~~~~~l~~~~~~~~e~~l~~~~~~~~-~~~l~~t~d~~~a 75 (362)
|||+|||.|..-++ +...|++. .++-+++++|+| +++++.+..- ...+.++.. .-.+..|+|.++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~--------~~~~~~~~~~~~~v~~t~d~~~a 72 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGAL--------AKRMVKKAGLPIKVHLTTDRREA 72 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHH--------HHHHHHhhCCCeEEEEeCCHHHH
Confidence 79999999997553 33444442 235789999999 8887654320 111122111 2347889999999
Q ss_pred hcCCcEEEEeccCC
Q 017997 76 VSEADIVFVSVNTP 89 (362)
Q Consensus 76 ~~~aDvVii~vptp 89 (362)
+++||+||++.-.+
T Consensus 73 l~gadfVi~~~~vg 86 (419)
T cd05296 73 LEGADFVFTQIRVG 86 (419)
T ss_pred hCCCCEEEEEEeeC
Confidence 99999999997644
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00054 Score=64.70 Aligned_cols=100 Identities=9% Similarity=0.070 Sum_probs=71.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+++|||+|..+...+..+....+-.+|.+|++++++.+++.+.. ++ ..-.+..+++.++++++||+
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~------------~~-~~~~v~~~~~~~~av~~ADI 195 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYA------------QA-LGFAVNTTLDAAEVAHAANL 195 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------Hh-cCCcEEEECCHHHHhcCCCE
Confidence 479999999999999998887655679999999999998776421 00 01235667889999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|+.|+++.. | +.. .+.+++++.|..-++..|+.
T Consensus 196 V~taT~s~~----------P----~~~-----~~~l~~G~hi~~iGs~~p~~ 228 (315)
T PRK06823 196 IVTTTPSRE----------P----LLQ-----AEDIQPGTHITAVGADSPGK 228 (315)
T ss_pred EEEecCCCC----------c----eeC-----HHHcCCCcEEEecCCCCccc
Confidence 999976431 1 111 13567898886555544443
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00037 Score=65.77 Aligned_cols=123 Identities=16% Similarity=0.147 Sum_probs=84.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
..++|||+|..+......+..-.+.-+|.+|+++++..+++.+.- ++.....+..+++.++++++||+
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l------------~~~~~~~v~a~~s~~~av~~aDi 198 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARL------------RKRGGEAVGAADSAEEAVEGADI 198 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHH------------HhhcCccceeccCHHHHhhcCCE
Confidence 358999999999999999988766679999999999998876420 00011135778899999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|+.|+|+.. |-++ .+.+++++.|...++-.|+..+.-.+.+... +-.++..++..
T Consensus 199 Ivt~T~s~~----------Pil~---------~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra----~~vvvD~~~q~ 253 (330)
T COG2423 199 VVTATPSTE----------PVLK---------AEWLKPGTHINAIGADAPGKRELDPEVLARA----DRVVVDSLEQT 253 (330)
T ss_pred EEEecCCCC----------Ceec---------HhhcCCCcEEEecCCCCcccccCCHHHHHhc----CeEEEcCHHHh
Confidence 999977532 2211 2457899988766665666544323334332 12455666544
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00035 Score=66.40 Aligned_cols=100 Identities=16% Similarity=0.137 Sum_probs=67.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+++|||+|.+|...+..|+...+-..|.+||+++++.+++.+... +...-.+...++.+++++ +|+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~l~-aDi 196 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMS------------SVVGCDVTVAEDIEEACD-CDI 196 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHH------------hhcCceEEEeCCHHHHhh-CCE
Confidence 4799999999999999999854223578999999999887764210 000112556778888776 999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|++|+|+.. | +.. .+.+++++.|..-++..|+.
T Consensus 197 Vv~aTps~~----------P----~~~-----~~~l~~g~hV~~iGs~~p~~ 229 (326)
T PRK06046 197 LVTTTPSRK----------P----VVK-----AEWIKEGTHINAIGADAPGK 229 (326)
T ss_pred EEEecCCCC----------c----Eec-----HHHcCCCCEEEecCCCCCcc
Confidence 999987531 1 111 13467888886545544543
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00095 Score=63.98 Aligned_cols=67 Identities=19% Similarity=0.389 Sum_probs=47.1
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--
Q 017997 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (362)
+||+|||+|.+|.. .+..+... ++.+++ ++|+++++... . .+...+.+|+++.++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-~~~~l~av~d~~~~~~~~---~-----------------~~~~~~~~~~~ell~~~ 63 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-PGLELAAVSSSDATKVKA---D-----------------WPTVTVVSEPQHLFNDP 63 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-CCCEEEEEECCCHHHHHh---h-----------------CCCCceeCCHHHHhcCC
Confidence 59999999999974 55556553 477776 57998876531 1 012345678888775
Q ss_pred CCcEEEEeccCC
Q 017997 78 EADIVFVSVNTP 89 (362)
Q Consensus 78 ~aDvVii~vptp 89 (362)
+.|+|++|+|+.
T Consensus 64 ~vD~V~I~tp~~ 75 (346)
T PRK11579 64 NIDLIVIPTPND 75 (346)
T ss_pred CCCEEEEcCCcH
Confidence 689999998764
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00041 Score=67.40 Aligned_cols=45 Identities=29% Similarity=0.354 Sum_probs=39.9
Q ss_pred ceEEEEcCChhHH-HHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCC
Q 017997 2 VKICCIGAGYVGG-PTMAVIALKCPSIEVAVVDISVSRINAWNSDQLP 48 (362)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~ 48 (362)
|||.++|+|.+|. .++..|.+. |++|+++|++++++++|++.+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~--g~~V~~vd~~~~~v~aL~~qglY 46 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN--GFEVTFVDVNQELIDALNKRKSY 46 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC--CCeEEEEECCHHHHHHHhcCCCe
Confidence 8999999999997 558888888 99999999999999999987543
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.64 E-value=8.2e-05 Score=72.20 Aligned_cols=90 Identities=12% Similarity=0.130 Sum_probs=64.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE------EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA------VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~------~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
++|+|||+|.+|...|..|... |++|+ ++|.+.+.-+.+.+. .+.. .+.+++
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdS--GvnVvvglr~~~id~~~~s~~kA~~d-------------------GF~v-~~~~Ea 94 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDS--GLDISYALRKEAIAEKRASWRKATEN-------------------GFKV-GTYEEL 94 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccc--cceeEEeccccccccccchHHHHHhc-------------------CCcc-CCHHHH
Confidence 5899999999999999888888 89888 444444333333221 1222 457888
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
++.||+|++.+|... -..+.+++.++++++.++...-.
T Consensus 95 ~~~ADvVviLlPDt~---------------q~~v~~~i~p~LK~Ga~L~fsHG 132 (487)
T PRK05225 95 IPQADLVINLTPDKQ---------------HSDVVRAVQPLMKQGAALGYSHG 132 (487)
T ss_pred HHhCCEEEEcCChHH---------------HHHHHHHHHhhCCCCCEEEecCC
Confidence 999999999987421 13445899999999998866443
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00033 Score=66.72 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=56.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.+|...+..++...+..+|.+|+|++++.+++.+.... . ..-.+...+|+++++.++|+
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~-----------~-~g~~v~~~~d~~~al~~aDi 200 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRA-----------E-LGIPVTVARDVHEAVAGADI 200 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhh-----------c-cCceEEEeCCHHHHHccCCE
Confidence 57999999999999888887532246899999999999987652100 0 01124556788888999999
Q ss_pred EEEeccCC
Q 017997 82 VFVSVNTP 89 (362)
Q Consensus 82 Vii~vptp 89 (362)
|+.|+|++
T Consensus 201 Vi~aT~s~ 208 (330)
T PRK08291 201 IVTTTPSE 208 (330)
T ss_pred EEEeeCCC
Confidence 99997753
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00047 Score=64.90 Aligned_cols=115 Identities=20% Similarity=0.294 Sum_probs=68.5
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ec--CHHhhhcC
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-ST--DVEKHVSE 78 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~--d~~~a~~~ 78 (362)
||+|||+ |.+|.++|..|+..+...++.++|+++ .+ |.. .++.+.. ..-+++. +. ++.+++++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~----g~a----~DL~~~~---~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AA----GVA----ADLSHIP---TAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--Cc----EEE----chhhcCC---cCceEEEecCCCchHHHcCC
Confidence 7999999 999999999998873234899999986 11 110 0011100 0123443 22 23456999
Q ss_pred CcEEEEeccCCCCCCCCCC--CCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 79 ADIVFVSVNTPTKTQGLGA--GKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~--~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
||+||++...|..+ ++.. --..+.+.+++..+.|.++. ++.++++ -|.|..+
T Consensus 68 aDivvitaG~~~~~-g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiiv-vsNPvDv 121 (312)
T TIGR01772 68 ADVVVIPAGVPRKP-GMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILV-ITNPVNS 121 (312)
T ss_pred CCEEEEeCCCCCCC-CccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEE-ecCchhh
Confidence 99999999876543 2110 00223345666677777774 5555544 3456654
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00036 Score=65.60 Aligned_cols=66 Identities=17% Similarity=0.410 Sum_probs=47.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCH-HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~-~d~~~-~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
+||+|||+|.||..++..+.+. ++.++++ +|+++ +++. +. . ....+.|..+.+.++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-pd~ELVgV~dr~~~~~~~---~~-~-----------------~v~~~~d~~e~l~~i 61 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-PDMELVGVFSRRGAETLD---TE-T-----------------PVYAVADDEKHLDDV 61 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-CCcEEEEEEcCCcHHHHh---hc-C-----------------CccccCCHHHhccCC
Confidence 6999999999999999888765 5888886 59885 4332 11 0 122234555667889
Q ss_pred cEEEEeccCC
Q 017997 80 DIVFVSVNTP 89 (362)
Q Consensus 80 DvVii~vptp 89 (362)
|+|++|+|+.
T Consensus 62 DVViIctPs~ 71 (324)
T TIGR01921 62 DVLILCMGSA 71 (324)
T ss_pred CEEEEcCCCc
Confidence 9999998754
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00052 Score=73.80 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=54.3
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCe-------------EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEE
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIE-------------VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF 67 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~-------------V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~ 67 (362)
|.||+|||+|.||.+.|..|++. ++.+ |++.|++++..+++.++...+ ..+.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~--------------~~v~ 633 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA--------------EAVQ 633 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCC--------------ceEE
Confidence 35899999999999999999976 3444 999999999988877642110 0122
Q ss_pred E-ecCHHhh---hcCCcEEEEeccCCC
Q 017997 68 F-STDVEKH---VSEADIVFVSVNTPT 90 (362)
Q Consensus 68 ~-t~d~~~a---~~~aDvVii~vptp~ 90 (362)
. .+|.++. ++++|+|++|+|+..
T Consensus 634 lDv~D~e~L~~~v~~~DaVIsalP~~~ 660 (1042)
T PLN02819 634 LDVSDSESLLKYVSQVDVVISLLPASC 660 (1042)
T ss_pred eecCCHHHHHHhhcCCCEEEECCCchh
Confidence 2 3454443 368999999998754
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0014 Score=61.70 Aligned_cols=107 Identities=12% Similarity=0.125 Sum_probs=69.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEe-CCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVD-ISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d-~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|+|+|.+|..+|.+|-.- | .++.|. |++..-+...+- . .. ..|.++.+.++|
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F--g-~~i~y~~r~~~~~~~~~~~------------------~-~~-~~d~~~~~~~sD 219 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF--G-CVILYHSRTQLPPEEAYEY------------------Y-AE-FVDIEELLANSD 219 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc--c-ceeeeecccCCchhhHHHh------------------c-cc-ccCHHHHHhhCC
Confidence 4799999999999999999985 7 655554 433322222110 0 01 235667789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
+|++|.|.. +++..+ +=+.+...++++.++|+.+--.....+.+.+.+++.
T Consensus 220 ~ivv~~pLt-----------~~T~~l--iNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 220 VIVVNCPLT-----------KETRHL--INKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred EEEEecCCC-----------HHHHHH--hhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence 999997742 222222 225777889999999985543444445666777664
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00014 Score=62.69 Aligned_cols=98 Identities=22% Similarity=0.304 Sum_probs=63.8
Q ss_pred EEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEE
Q 017997 4 ICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIV 82 (362)
Q Consensus 4 I~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (362)
|.|+|+ |++|..++..|.+. ||+|+++-|++++.+. ..+ ..+.. +.+.-.++..++++++|.|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~--~~~V~~~~R~~~~~~~-~~~-~~~~~------------~d~~d~~~~~~al~~~d~v 64 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR--GHEVTALVRSPSKAED-SPG-VEIIQ------------GDLFDPDSVKAALKGADAV 64 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TSEEEEEESSGGGHHH-CTT-EEEEE------------SCTTCHHHHHHHHTTSSEE
T ss_pred eEEECCCChHHHHHHHHHHHC--CCEEEEEecCchhccc-ccc-cccce------------eeehhhhhhhhhhhhcchh
Confidence 789996 99999999999999 8999999999998887 211 11100 0010012345678899999
Q ss_pred EEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 83 FVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 83 ii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
|.+++.+.. |....+.+++.+.+. +...+|+.+|.
T Consensus 65 i~~~~~~~~----------~~~~~~~~~~a~~~~-~~~~~v~~s~~ 99 (183)
T PF13460_consen 65 IHAAGPPPK----------DVDAAKNIIEAAKKA-GVKRVVYLSSA 99 (183)
T ss_dssp EECCHSTTT----------HHHHHHHHHHHHHHT-TSSEEEEEEET
T ss_pred hhhhhhhcc----------ccccccccccccccc-ccccceeeecc
Confidence 999975432 344455555555443 34455555444
|
... |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00043 Score=59.00 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=52.7
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+ |.+|..++.-..+. ||+|+++-||++++... ++...+ + ..+.--+...+.+.+-|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R--GHeVTAivRn~~K~~~~-~~~~i~-q------------~Difd~~~~a~~l~g~D 64 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR--GHEVTAIVRNASKLAAR-QGVTIL-Q------------KDIFDLTSLASDLAGHD 64 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC--CCeeEEEEeChHhcccc-ccceee-c------------ccccChhhhHhhhcCCc
Confidence 89999995 99999999999999 99999999999998664 221111 1 11111122345688999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||-+...+
T Consensus 65 aVIsA~~~~ 73 (211)
T COG2910 65 AVISAFGAG 73 (211)
T ss_pred eEEEeccCC
Confidence 999998754
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00025 Score=62.47 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=30.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~ 35 (362)
.+|+|+|+|.+|+.+|..|++. |. +++++|.|
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~--Gvg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARA--GIGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHc--CCCEEEEECCC
Confidence 4799999999999999999999 88 79999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00054 Score=67.54 Aligned_cols=71 Identities=25% Similarity=0.391 Sum_probs=53.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|+|||+|.||..++..|... |. +|+++++++++.+.+.+.. ........+..+++.++|
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~--G~~~V~v~~r~~~ra~~la~~~----------------g~~~~~~~~~~~~l~~aD 244 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEK--GVRKITVANRTLERAEELAEEF----------------GGEAIPLDELPEALAEAD 244 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHHc----------------CCcEeeHHHHHHHhccCC
Confidence 4899999999999999999987 76 8999999999887665421 011111234556678999
Q ss_pred EEEEeccCCC
Q 017997 81 IVFVSVNTPT 90 (362)
Q Consensus 81 vVii~vptp~ 90 (362)
+||.|++.|.
T Consensus 245 vVI~aT~s~~ 254 (423)
T PRK00045 245 IVISSTGAPH 254 (423)
T ss_pred EEEECCCCCC
Confidence 9999987653
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0004 Score=66.25 Aligned_cols=102 Identities=16% Similarity=0.111 Sum_probs=70.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+++|||+|..+...+..+..-.+-.+|.+|++++++.+++.+... +. .-.+..+++.++++++||+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~---~~----------~~~v~~~~~~~~av~~ADI 196 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLA---GP----------GLRIVACRSVAEAVEGADI 196 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHH---hc----------CCcEEEeCCHHHHHhcCCE
Confidence 3699999999999888877765445689999999999987764210 00 1236677899999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|+.|++++.. .| +.. .+.+++|+.|..-.+..|+.
T Consensus 197 IvtaT~S~~~--------~P----vl~-----~~~lkpG~hV~aIGs~~p~~ 231 (346)
T PRK07589 197 ITTVTADKTN--------AT----ILT-----DDMVEPGMHINAVGGDCPGK 231 (346)
T ss_pred EEEecCCCCC--------Cc----eec-----HHHcCCCcEEEecCCCCCCc
Confidence 9999864310 01 111 14568888876544444544
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00043 Score=65.50 Aligned_cols=113 Identities=17% Similarity=0.216 Sum_probs=67.0
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH--HHHcCCCCCCCCChHHHHhhhcCCCEEE---ecCHHhh
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRIN--AWNSDQLPIYEPGLDGVVKQCRGKNLFF---STDVEKH 75 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~--~l~~~~~~~~e~~l~~~~~~~~~~~l~~---t~d~~~a 75 (362)
.||+|||+ |.+|..+|..|+..+...++.++|+++..-+ .|..... .-.+.. ++|+.++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~---------------~~~i~~~~~~~d~~~~ 83 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINT---------------PAQVRGFLGDDQLGDA 83 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCc---------------CceEEEEeCCCCHHHH
Confidence 48999999 9999999999997632358999999861100 1111000 012322 3345667
Q ss_pred hcCCcEEEEeccCCCCCCCCC--CCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 76 VSEADIVFVSVNTPTKTQGLG--AGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~--~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
++++|+||++...|..+ ++. +--..+...+++..+.+.++. ++.+|+. +|.|..
T Consensus 84 l~~aDiVVitAG~~~~~-g~~R~dll~~N~~i~~~i~~~i~~~~-p~aiviv-vSNPvD 139 (323)
T PLN00106 84 LKGADLVIIPAGVPRKP-GMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNI-ISNPVN 139 (323)
T ss_pred cCCCCEEEEeCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE-eCCCcc
Confidence 99999999998876542 110 000122334455556666664 5555544 566665
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00024 Score=70.53 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=53.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHhhhcCCCEEEecCHHhh-hcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH-VSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~a 79 (362)
|+|.|+|+|.+|..+|..|.+. |++|+++|+++++++.+.+ ...+... +...-...+.++ +.++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~--g~~v~vid~~~~~~~~~~~~~~~~~~~------------gd~~~~~~l~~~~~~~a 66 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE--NNDVTVIDTDEERLRRLQDRLDVRTVV------------GNGSSPDVLREAGAEDA 66 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHhhcCEEEEE------------eCCCCHHHHHHcCCCcC
Confidence 7999999999999999999998 9999999999999998865 2111110 111111122333 6789
Q ss_pred cEEEEeccC
Q 017997 80 DIVFVSVNT 88 (362)
Q Consensus 80 DvVii~vpt 88 (362)
|.++++++.
T Consensus 67 ~~vi~~~~~ 75 (453)
T PRK09496 67 DLLIAVTDS 75 (453)
T ss_pred CEEEEecCC
Confidence 999999764
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00042 Score=65.46 Aligned_cols=102 Identities=21% Similarity=0.208 Sum_probs=62.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+++|||+|..+...+..++...|-.+|.+|+|++++.+++.+.. ++ ..-.+..++|.++++++||+
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~------------~~-~~~~v~~~~~~~~av~~aDi 195 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARL------------RD-LGVPVVAVDSAEEAVRGADI 195 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHH------------HC-CCTCEEEESSHHHHHTTSSE
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhh------------cc-ccccceeccchhhhcccCCE
Confidence 379999999999999999987665668999999999998876521 11 12347788999999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|+.|+|+.... |=+ . ...+++++.|..-+...|+.
T Consensus 196 i~taT~s~~~~--------P~~---~------~~~l~~g~hi~~iGs~~~~~ 230 (313)
T PF02423_consen 196 IVTATPSTTPA--------PVF---D------AEWLKPGTHINAIGSYTPGM 230 (313)
T ss_dssp EEE----SSEE--------ESB----------GGGS-TT-EEEE-S-SSTTB
T ss_pred EEEccCCCCCC--------ccc---c------HHHcCCCcEEEEecCCCCch
Confidence 99997753200 111 0 24577888886555444443
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00085 Score=63.87 Aligned_cols=72 Identities=25% Similarity=0.326 Sum_probs=50.8
Q ss_pred CceEEEEcCChhH-HHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 1 MVKICCIGAGYVG-GPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G-~~lA~~la~~~~G--~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
++||+|||+|.++ ...+..+.+.. + .-|.++|+++++.+.+.+.. +.-.+.+|+++.++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~-~~~~~vav~d~~~~~a~~~a~~~-----------------~~~~~~~~~~~ll~ 64 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALG-GGLELVAVVDRDPERAEAFAEEF-----------------GIAKAYTDLEELLA 64 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCC-CceEEEEEecCCHHHHHHHHHHc-----------------CCCcccCCHHHHhc
Confidence 4799999999555 55777777761 2 24666799999988776521 11146678888776
Q ss_pred C--CcEEEEeccCCC
Q 017997 78 E--ADIVFVSVNTPT 90 (362)
Q Consensus 78 ~--aDvVii~vptp~ 90 (362)
+ .|+|+||+|+..
T Consensus 65 ~~~iD~V~Iatp~~~ 79 (342)
T COG0673 65 DPDIDAVYIATPNAL 79 (342)
T ss_pred CCCCCEEEEcCCChh
Confidence 4 699999988643
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00042 Score=66.35 Aligned_cols=98 Identities=22% Similarity=0.347 Sum_probs=55.0
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|+|+ |++|..++..|++. |+++++.+-.+.+.-+.+.+....+. +. ....+.+-.+....++
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-p~~elv~v~~~~~~g~~l~~~~~~~~--~~---------~~~~~~~~~~~~~~~v 69 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-PEVEIVAVTSRSSAGKPLSDVHPHLR--GL---------VDLVLEPLDPEILAGA 69 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-CCceEEEEECccccCcchHHhCcccc--cc---------cCceeecCCHHHhcCC
Confidence 579999997 99999999999875 57887665433332222221100000 00 0111211111135789
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
|+||+|+|+.. -.+....+ +..+..||+.|.
T Consensus 70 D~Vf~alP~~~---------------~~~~v~~a---~~aG~~VID~S~ 100 (343)
T PRK00436 70 DVVFLALPHGV---------------SMDLAPQL---LEAGVKVIDLSA 100 (343)
T ss_pred CEEEECCCcHH---------------HHHHHHHH---HhCCCEEEECCc
Confidence 99999987532 12333333 345788888776
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00053 Score=59.18 Aligned_cols=77 Identities=23% Similarity=0.271 Sum_probs=50.0
Q ss_pred eEEEEcCChhHHHHHHH-HHHc---CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhc
Q 017997 3 KICCIGAGYVGGPTMAV-IALK---CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~-la~~---~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~ 77 (362)
||+|||.|..-.+.-.. +... .++-++.++|+|+++++....- .+.+.++ ...-++..|+|.++|++
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~--------~~~~~~~~~~~~~v~~ttd~~eAl~ 72 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERL--------ARRMVEEAGADLKVEATTDRREALE 72 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHH--------HHHHHHHCTTSSEEEEESSHHHHHT
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEeCCHHHHhC
Confidence 89999999988774322 2222 1345899999999999865430 1112222 11234788999999999
Q ss_pred CCcEEEEecc
Q 017997 78 EADIVFVSVN 87 (362)
Q Consensus 78 ~aDvVii~vp 87 (362)
+||+||.++-
T Consensus 73 gADfVi~~ir 82 (183)
T PF02056_consen 73 GADFVINQIR 82 (183)
T ss_dssp TESEEEE---
T ss_pred CCCEEEEEee
Confidence 9999999975
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00067 Score=64.34 Aligned_cols=119 Identities=18% Similarity=0.254 Sum_probs=67.9
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCC-----CCeEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCP-----SIEVAVVDISVSR--INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~-----G~~V~~~d~~~~~--~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (362)
||+|||+ |.+|..+|..|+..+- .+++.++|+++.. .+.... ++.+..... ...+..+++..+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~--------Dl~d~~~~~-~~~~~~~~~~~~ 71 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVM--------ELMDCAFPL-LDGVVPTHDPAV 71 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEe--------ehhcccchh-cCceeccCChHH
Confidence 6999999 9999999999987511 2269999996542 221111 111100000 112344445345
Q ss_pred hhcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 75 HVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
++++||+||++-..|... + .++ ..+.+.+++..+.|.++.+++.++++-| .|....
T Consensus 72 ~~~~aDiVVitAG~~~~~-~--~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs-NPvDv~ 131 (324)
T TIGR01758 72 AFTDVDVAILVGAFPRKE-G--MERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG-NPANTN 131 (324)
T ss_pred HhCCCCEEEEcCCCCCCC-C--CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC-CcHHHH
Confidence 699999999998876542 1 011 1122445666677777754556665533 555443
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.001 Score=59.99 Aligned_cols=109 Identities=18% Similarity=0.290 Sum_probs=69.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH----HHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINA----WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~----l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
.||.|+|.|.+|.+.|..+..++.-.++.++|.++++++. |+- ..++ ....++..+.|+.. -+
T Consensus 21 ~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH-~s~f-----------~~~~~V~~~~Dy~~-sa 87 (332)
T KOG1495|consen 21 NKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQH-GSAF-----------LSTPNVVASKDYSV-SA 87 (332)
T ss_pred ceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhcc-cccc-----------ccCCceEecCcccc-cC
Confidence 4899999999999999988877334589999999987652 221 1222 12346777778875 78
Q ss_pred CCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEee
Q 017997 78 EADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKS 127 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~S 127 (362)
+++++|++...-..+ | +++ .-+.+.++.++..+.++ .|++++++-|
T Consensus 88 ~S~lvIiTAGarq~~-g--esRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvS 137 (332)
T KOG1495|consen 88 NSKLVIITAGARQSE-G--ESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVS 137 (332)
T ss_pred CCcEEEEecCCCCCC-C--cHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEec
Confidence 999999998754332 1 111 11223344555555555 4566655444
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00068 Score=64.97 Aligned_cols=97 Identities=25% Similarity=0.392 Sum_probs=56.6
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-cCHHhhhcC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~ 78 (362)
|||+|+|+ |++|..+...|.++ |+++++ +++.+...-+.+.+-. +.+.. ...+.+. .+.++...+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-P~~el~~l~~s~~sagk~~~~~~-----~~l~~------~~~~~~~~~~~~~~~~~ 68 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-PEVEITYLVSSRESAGKPVSEVH-----PHLRG------LVDLNLEPIDEEEIAED 68 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCceEEEEeccchhcCCChHHhC-----ccccc------cCCceeecCCHHHhhcC
Confidence 69999998 99999999999876 678888 4465542222122100 00000 0012222 244554468
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
+|++|+|+|+.. -.+....+ ...+..||+.|+
T Consensus 69 ~DvVf~alP~~~---------------s~~~~~~~---~~~G~~VIDlS~ 100 (346)
T TIGR01850 69 ADVVFLALPHGV---------------SAELAPEL---LAAGVKVIDLSA 100 (346)
T ss_pred CCEEEECCCchH---------------HHHHHHHH---HhCCCEEEeCCh
Confidence 999999988532 12333333 245778888765
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00092 Score=67.20 Aligned_cols=73 Identities=23% Similarity=0.299 Sum_probs=54.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|||+|.||..++..|... |. +|+++++++++.+.+.+... +.. -.....++..+++.++|
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~--G~~~V~V~nRs~era~~La~~~~-----g~~--------i~~~~~~dl~~al~~aD 331 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSK--GCTKMVVVNRSEERVAALREEFP-----DVE--------IIYKPLDEMLACAAEAD 331 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHhC-----CCc--------eEeecHhhHHHHHhcCC
Confidence 4799999999999999999988 75 79999999999988875210 000 00112245566789999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.|++.+
T Consensus 332 VVIsAT~s~ 340 (519)
T PLN00203 332 VVFTSTSSE 340 (519)
T ss_pred EEEEccCCC
Confidence 999998754
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.001 Score=63.27 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=55.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+++|||+|.+|...+..|+... + .+|++|+|++++.+++.+... ++ ..-.+...++.++++.++|
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~-~i~~v~V~~R~~~~a~~~a~~~~-----------~~-~g~~v~~~~~~~~av~~aD 196 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVR-DIRSARIWARDSAKAEALALQLS-----------SL-LGIDVTAATDPRAAMSGAD 196 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhC-CccEEEEECCCHHHHHHHHHHHH-----------hh-cCceEEEeCCHHHHhccCC
Confidence 47999999999999999997532 4 579999999999988764210 00 0112455678888899999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+|+.|+|++
T Consensus 197 iVvtaT~s~ 205 (326)
T TIGR02992 197 IIVTTTPSE 205 (326)
T ss_pred EEEEecCCC
Confidence 999997653
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0043 Score=64.86 Aligned_cols=131 Identities=12% Similarity=0.105 Sum_probs=83.7
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCC----c
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP----E 157 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P----e 157 (362)
||+|+|. +.+.+.++++.++++++++|++-+++.....+.+.+.+... ..-+|..|| |
T Consensus 1 vila~Pv---------------~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~---~~~fvg~HPMaG~e 62 (673)
T PRK11861 1 VLLAAPV---------------AQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGAR---IGQFVPGHPIAGRE 62 (673)
T ss_pred CEEEcCH---------------HHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhcccc---CCeEEecCCcCcCc
Confidence 6899773 35688899999999999999875555433333333333221 112567777 6
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhH-HHHHHHHHhHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS-AELSKLAANAFLAQRISSVNAM 233 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-ae~~Kl~~N~~~~~~ia~~nE~ 233 (362)
..++.++..++++...+++- +.+..++++++.++++++.++ ..+..++++. -+++-+++-.-..+-.++++.+
T Consensus 63 ~~G~~~a~~~Lf~~~~~il~-p~~~~~~~~~~~~~~l~~~~G--a~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~~ 136 (673)
T PRK11861 63 SSGVDAALADLYVGRNVVLC-ALPENAPDALARVEAMWRAAR--ADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQI 136 (673)
T ss_pred chhhhhhChhHhCCCeEEEe-cCCCCCHHHHHHHHHHHHHcC--CEEEECCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666778888887777665 334445788999999999986 4677777754 3444444444444444444433
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0014 Score=65.34 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=68.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec-C--------H
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-D--------V 72 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d--------~ 72 (362)
.|+.|+|+|.+|...+..+... |..|+++|+++++.+.+++-....-+....+--. ...+..+..+ + .
T Consensus 165 akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~-~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGG-SGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEecccccccc-ccccceeecCHHHHHHHHHHH
Confidence 3899999999999888888777 8889999999999888775322211111110000 0011111111 1 2
Q ss_pred HhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 73 ~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
.+.++++|+||.|+--|-.. .| +-+.++..+.++++.+|++-|.-+.|
T Consensus 242 ~e~~~~~DIVI~TalipG~~-------aP-----~Lit~emv~~MKpGsvIVDlA~d~GG 289 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKP-------AP-----KLITEEMVDSMKAGSVIVDLAAEQGG 289 (511)
T ss_pred HHHhCCCCEEEECcccCCCC-------CC-----eeehHHHHhhCCCCCEEEEeeeCCCC
Confidence 23367899999998222110 11 11344556778899998886654444
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0013 Score=61.60 Aligned_cols=113 Identities=21% Similarity=0.288 Sum_probs=66.4
Q ss_pred EEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-cCHHhhhcCCcEEEE
Q 017997 6 CIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVSEADIVFV 84 (362)
Q Consensus 6 VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~aDvVii 84 (362)
|||+|.+|.++|..|+..+-.-++.++|+++++++..... +..... ....+.+.+ .+++ ++++||+||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D--------l~~~~~-~~~~~~~i~~~~~~-~~~daDivVi 70 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMD--------LQHAAS-FLPTPKKIRSGDYS-DCKDADLVVI 70 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHH--------HHHhhc-ccCCCeEEecCCHH-HHCCCCEEEE
Confidence 6999999999999998873233799999988765543321 110000 011122333 4555 5999999999
Q ss_pred eccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 85 SVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 85 ~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
+...|..+ |+ ++ ..+...+++..+.|.++. ++.+|++-| .|..+
T Consensus 71 tag~~rk~-g~--~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvs-NP~d~ 118 (299)
T TIGR01771 71 TAGAPQKP-GE--TRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVAT-NPVDI 118 (299)
T ss_pred CCCCCCCC-CC--CHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeC-CHHHH
Confidence 98876543 21 11 112244566666777764 555554433 45443
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00072 Score=65.46 Aligned_cols=95 Identities=21% Similarity=0.303 Sum_probs=59.0
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEE-Ee-cCHHhhhc
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF-FS-TDVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~-~t-~d~~~a~~ 77 (362)
+|||+|+|+ |++|..+...|..+ |+++|+.+..+...-+.+......+. .+.+. +. .+..+ ++
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~h-P~~el~~l~s~~saG~~i~~~~~~l~------------~~~~~~~~~~~~~~-~~ 103 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANH-PDFEITVMTADRKAGQSFGSVFPHLI------------TQDLPNLVAVKDAD-FS 103 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhC-CCCeEEEEEChhhcCCCchhhCcccc------------CccccceecCCHHH-hc
Confidence 369999996 99999999999887 68899999876543322222111110 01111 11 12222 68
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
++|+||+|+|.. +...+.+.+..+..||+.|+
T Consensus 104 ~~DvVf~Alp~~-------------------~s~~i~~~~~~g~~VIDlSs 135 (381)
T PLN02968 104 DVDAVFCCLPHG-------------------TTQEIIKALPKDLKIVDLSA 135 (381)
T ss_pred CCCEEEEcCCHH-------------------HHHHHHHHHhCCCEEEEcCc
Confidence 999999998741 23334444446777888776
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0024 Score=61.19 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=45.5
Q ss_pred CceEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc-
Q 017997 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (362)
|+||+|||+|.++.. .+..+....++.+|+ ++|+++++. ...+. -+...+.+|+++.++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~-----------------~~~~~~~~~~~ell~~ 62 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPI-----------------YSHIHFTSDLDEVLND 62 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHh-----------------cCCCcccCCHHHHhcC
Confidence 579999999997752 334343322357775 579987654 22221 012345678888775
Q ss_pred -CCcEEEEeccCC
Q 017997 78 -EADIVFVSVNTP 89 (362)
Q Consensus 78 -~aDvVii~vptp 89 (362)
+.|+|+||+|+.
T Consensus 63 ~~iD~V~I~tp~~ 75 (344)
T PRK10206 63 PDVKLVVVCTHAD 75 (344)
T ss_pred CCCCEEEEeCCch
Confidence 679999998754
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0015 Score=60.62 Aligned_cols=73 Identities=12% Similarity=0.197 Sum_probs=53.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.++.|+|+|.+|.+++..|+.. | .+|++++|+.++.+.+.+..... ..+.+..+..+.+.++|
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~--g~~~V~v~~R~~~~a~~l~~~~~~~--------------~~~~~~~~~~~~~~~~D 187 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDL--GVAEITIVNRTVERAEELAKLFGAL--------------GKAELDLELQEELADFD 187 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhhhc--------------cceeecccchhccccCC
Confidence 3789999999999999999988 7 79999999999988876521100 00122112334578899
Q ss_pred EEEEeccCCC
Q 017997 81 IVFVSVNTPT 90 (362)
Q Consensus 81 vVii~vptp~ 90 (362)
+||-|+|.+.
T Consensus 188 ivInaTp~g~ 197 (278)
T PRK00258 188 LIINATSAGM 197 (278)
T ss_pred EEEECCcCCC
Confidence 9999987654
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0017 Score=65.00 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=50.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+++.|+|+|.+|.+++..|++. |++|+++++++++.+.+.+... .......+..+ +.++|+
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~--G~~V~i~~R~~~~~~~la~~~~----------------~~~~~~~~~~~-l~~~Di 393 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARA--GAELLIFNRTKAHAEALASRCQ----------------GKAFPLESLPE-LHRIDI 393 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc----------------cceechhHhcc-cCCCCE
Confidence 5799999999999999999998 8999999999998887754210 00000112222 578999
Q ss_pred EEEeccC
Q 017997 82 VFVSVNT 88 (362)
Q Consensus 82 Vii~vpt 88 (362)
||.|+|.
T Consensus 394 VInatP~ 400 (477)
T PRK09310 394 IINCLPP 400 (477)
T ss_pred EEEcCCC
Confidence 9999874
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00072 Score=66.19 Aligned_cols=72 Identities=15% Similarity=0.279 Sum_probs=55.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|||+|-||..++..|+.. | .++++++|+.++.+.+.+... .......++..+.+.++|
T Consensus 182 kkvlviGaG~~a~~va~~L~~~--g~~~I~V~nRt~~ra~~La~~~~---------------~~~~~~~~~l~~~l~~aD 244 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTAL--APKQIMLANRTIEKAQKITSAFR---------------NASAHYLSELPQLIKKAD 244 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHHhc---------------CCeEecHHHHHHHhccCC
Confidence 4799999999999999999998 6 589999999999888875310 011222245556689999
Q ss_pred EEEEeccCCC
Q 017997 81 IVFVSVNTPT 90 (362)
Q Consensus 81 vVii~vptp~ 90 (362)
+||.|++.|.
T Consensus 245 iVI~aT~a~~ 254 (414)
T PRK13940 245 IIIAAVNVLE 254 (414)
T ss_pred EEEECcCCCC
Confidence 9999988763
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00027 Score=66.28 Aligned_cols=107 Identities=20% Similarity=0.248 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHcCCCCeEEEEeCCHHHHHH----HHcCCCC-CCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEEEEec
Q 017997 12 VGGPTMAVIALKCPSIEVAVVDISVSRINA----WNSDQLP-IYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSV 86 (362)
Q Consensus 12 ~G~~lA~~la~~~~G~~V~~~d~~~~~~~~----l~~~~~~-~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~v 86 (362)
||..+|.++..+ |++|++.|.|..-++. +..+..+ ..-..++..-..-...++.-+.|+.. ++++|+++.+|
T Consensus 1 MG~gia~~~~~~--~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~-~~~~dmvieav 77 (380)
T KOG1683|consen 1 MGAGIAIVFILA--GIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTG-FANADMVIEAV 77 (380)
T ss_pred CcchHHHHHHHc--CCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhccccccccc-ccccceeccch
Confidence 788999999999 9999999999766552 1111000 00000000000001234566777776 99999996664
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccH
Q 017997 87 NTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTA 134 (362)
Q Consensus 87 ptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~ 134 (362)
..|++-..+++.+|.+.++++++. .++|+.+++..
T Consensus 78 -------------~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~i 113 (380)
T KOG1683|consen 78 -------------FEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVI 113 (380)
T ss_pred -------------hhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHH
Confidence 345667789999999999999977 88888887653
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0014 Score=61.10 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=53.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|+|+|.+|.+++..|+.. |. +|+++||+.++.+.+.+.... ......+....+..+.+.++|
T Consensus 128 k~vlIlGaGGaaraia~aL~~~--G~~~I~I~nR~~~ka~~la~~l~~-----------~~~~~~~~~~~~~~~~~~~aD 194 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL--GVERLTIFDVDPARAAALADELNA-----------RFPAARATAGSDLAAALAAAD 194 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHHHHh-----------hCCCeEEEeccchHhhhCCCC
Confidence 3799999999999999999998 76 799999999999887642100 000001222234444578899
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||-|+|..
T Consensus 195 iVInaTp~G 203 (284)
T PRK12549 195 GLVHATPTG 203 (284)
T ss_pred EEEECCcCC
Confidence 999997653
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.003 Score=60.23 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=52.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~-~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.||+|||+ .||...+..+.+..+++++++ +|+++++.+++.+.. ++...+|+++.+.+.|
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~------------------gi~~y~~~eell~d~D 64 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL------------------GVPLYCEVEELPDDID 64 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh------------------CCCccCCHHHHhcCCC
Confidence 58999999 679988888887521566655 699999988876521 1234578888888899
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
++++++||.
T Consensus 65 i~~V~ipt~ 73 (343)
T TIGR01761 65 IACVVVRSA 73 (343)
T ss_pred EEEEEeCCC
Confidence 999999763
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0028 Score=50.38 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=49.4
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|.|+|.|.+|..++..|.+. +.+|+++|.|+++++.+.+...++. ++.-.+.+++ .-+++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~--~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~-------------a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG--GIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLER-------------AGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHH-------------TTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhC--CCEEEEEECCcHHHHHHHhcccccccccchhhhHHhh-------------cCccccCE
Confidence 57999999999999999997 7899999999999999886543221 1111111111 12678999
Q ss_pred EEEecc
Q 017997 82 VFVSVN 87 (362)
Q Consensus 82 Vii~vp 87 (362)
++++++
T Consensus 66 vv~~~~ 71 (116)
T PF02254_consen 66 VVILTD 71 (116)
T ss_dssp EEEESS
T ss_pred EEEccC
Confidence 999965
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0015 Score=67.25 Aligned_cols=72 Identities=13% Similarity=0.287 Sum_probs=53.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
++|.|+|.|.+|..++..|.+. |++|+++|.|+++++.+++...+.. +..-.+.+++ .-+++|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~-------------agi~~A 465 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRA-------------AGAEKA 465 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHh-------------cCCccC
Confidence 4789999999999999999998 9999999999999999876433321 1221111111 126789
Q ss_pred cEEEEeccC
Q 017997 80 DIVFVSVNT 88 (362)
Q Consensus 80 DvVii~vpt 88 (362)
|.+++++++
T Consensus 466 ~~vv~~~~d 474 (601)
T PRK03659 466 EAIVITCNE 474 (601)
T ss_pred CEEEEEeCC
Confidence 999999774
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0028 Score=58.75 Aligned_cols=69 Identities=22% Similarity=0.252 Sum_probs=45.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHH--HHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc-
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRIN--AWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~-~d~~~~~~~--~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (362)
+||+|||+|.||.-++..+.+. ++.++.. +|++++... ..++- +.-...++.++.++
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-~~~elvaV~d~d~es~~la~A~~~------------------Gi~~~~~~~e~ll~~ 62 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-EHLEMVAMVGIDPESDGLARAREL------------------GVKTSAEGVDGLLAN 62 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-CCcEEEEEEeCCcccHHHHHHHHC------------------CCCEEECCHHHHhcC
Confidence 6899999999999887777753 3677665 688876532 22211 11123445666553
Q ss_pred -CCcEEEEeccCC
Q 017997 78 -EADIVFVSVNTP 89 (362)
Q Consensus 78 -~aDvVii~vptp 89 (362)
+.|+|++|+|++
T Consensus 63 ~dIDaV~iaTp~~ 75 (285)
T TIGR03215 63 PDIDIVFDATSAK 75 (285)
T ss_pred CCCCEEEECCCcH
Confidence 689999998754
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0035 Score=58.27 Aligned_cols=133 Identities=16% Similarity=0.232 Sum_probs=81.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-cCHHh---hhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEK---HVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~---a~~ 77 (362)
.+|..||+|..|.+....++...|+-+++++|+|++.++..++.-.. .+++. .+++|. .|..+ ...
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~--~~gL~--------~rV~F~~~Da~~~~~~l~ 194 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS--DPDLS--------KRMFFHTADVMDVTESLK 194 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh--ccCcc--------CCcEEEECchhhcccccC
Confidence 47999999999986655555555667899999999998876642100 12221 234432 22222 146
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc-cCCCceEEeeCC
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN-SKGIKFQILSNP 156 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~-~~g~~~~v~~~P 156 (362)
+.|+||+.+=-..+. ..-..+++.+.+.+++|.+++..| .-|...-+.+.+... ..|.+.....+|
T Consensus 195 ~FDlVF~~ALi~~dk-----------~~k~~vL~~l~~~LkPGG~Lvlr~--~~G~r~~LYp~v~~~~~~gf~~~~~~~P 261 (296)
T PLN03075 195 EYDVVFLAALVGMDK-----------EEKVKVIEHLGKHMAPGALLMLRS--AHGARAFLYPVVDPCDLRGFEVLSVFHP 261 (296)
T ss_pred CcCEEEEeccccccc-----------ccHHHHHHHHHHhcCCCcEEEEec--ccchHhhcCCCCChhhCCCeEEEEEECC
Confidence 899999985222111 122678999999999999998877 244444445443222 124444555677
Q ss_pred c
Q 017997 157 E 157 (362)
Q Consensus 157 e 157 (362)
+
T Consensus 262 ~ 262 (296)
T PLN03075 262 T 262 (296)
T ss_pred C
Confidence 4
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0019 Score=59.31 Aligned_cols=91 Identities=16% Similarity=0.092 Sum_probs=64.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~-~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.||+|||.|.-|.+-|.+|.++ |.+|++=-+.... .++..+ ..+.+ -+++++++.+|
T Consensus 19 K~iaIIGYGsQG~ahalNLRDS--GlnViiGlr~g~~s~~kA~~-------------------dGf~V-~~v~ea~k~AD 76 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDS--GLNVIIGLRKGSSSWKKAKE-------------------DGFKV-YTVEEAAKRAD 76 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhc--CCcEEEEecCCchhHHHHHh-------------------cCCEe-ecHHHHhhcCC
Confidence 4899999999999999999999 8987754442222 232222 22443 45778899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHH-HHHhhcCCCCEEEEeeCC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR-VIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~-~i~~~l~~~~iVv~~STv 129 (362)
+|++-+|.-. -.++.+ .|.+.|+++..+.....+
T Consensus 77 vim~L~PDe~---------------q~~vy~~~I~p~Lk~G~aL~FaHGf 111 (338)
T COG0059 77 VVMILLPDEQ---------------QKEVYEKEIAPNLKEGAALGFAHGF 111 (338)
T ss_pred EEEEeCchhh---------------HHHHHHHHhhhhhcCCceEEecccc
Confidence 9999987422 144555 899999999988665543
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0033 Score=60.91 Aligned_cols=70 Identities=23% Similarity=0.359 Sum_probs=55.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.++.|||+|-||.-.|.+|+.+ | .+|++.+|+.++.+.|.+.. .+....-++..+.+.++|
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~--g~~~i~IaNRT~erA~~La~~~----------------~~~~~~l~el~~~l~~~D 240 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEK--GVKKITIANRTLERAEELAKKL----------------GAEAVALEELLEALAEAD 240 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhC--CCCEEEEEcCCHHHHHHHHHHh----------------CCeeecHHHHHHhhhhCC
Confidence 3799999999999999999999 6 78999999999999887631 112223345566789999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.|+..|
T Consensus 241 vVissTsa~ 249 (414)
T COG0373 241 VVISSTSAP 249 (414)
T ss_pred EEEEecCCC
Confidence 999997765
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0026 Score=59.64 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=53.6
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHH------HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSR------INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~------~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (362)
|+|+|-|+ |++|+.+...|.++ ||.|.+.-|+++. +.++...... +. .....+....++.+
T Consensus 7 ~~VcVTGAsGfIgswivk~LL~r--GY~V~gtVR~~~~~k~~~~L~~l~~a~~~-----l~-----l~~aDL~d~~sf~~ 74 (327)
T KOG1502|consen 7 KKVCVTGASGFIGSWIVKLLLSR--GYTVRGTVRDPEDEKKTEHLRKLEGAKER-----LK-----LFKADLLDEGSFDK 74 (327)
T ss_pred cEEEEeCCchHHHHHHHHHHHhC--CCEEEEEEcCcchhhhHHHHHhcccCccc-----ce-----EEeccccccchHHH
Confidence 68999985 99999999999999 9999999998876 3333311100 00 01123444556788
Q ss_pred hhcCCcEEEEeccCCCCC
Q 017997 75 HVSEADIVFVSVNTPTKT 92 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~ 92 (362)
++++||.||=+- +|...
T Consensus 75 ai~gcdgVfH~A-sp~~~ 91 (327)
T KOG1502|consen 75 AIDGCDGVFHTA-SPVDF 91 (327)
T ss_pred HHhCCCEEEEeC-ccCCC
Confidence 999999987654 45443
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0018 Score=60.83 Aligned_cols=98 Identities=26% Similarity=0.442 Sum_probs=57.2
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec-CHHhh-hc
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKH-VS 77 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a-~~ 77 (362)
|+||+|+| .||-|.-+.+.|+.+ |..++..+..++.+=+.+.+-. |.+.... .+.++. |.++. ..
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-p~ve~~~~ss~~~~g~~~~~~~-----p~l~g~~------~l~~~~~~~~~~~~~ 69 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-PDVELILISSRERAGKPVSDVH-----PNLRGLV------DLPFQTIDPEKIELD 69 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-CCeEEEEeechhhcCCchHHhC-----ccccccc------ccccccCChhhhhcc
Confidence 68999999 599999999999987 5778777776543222222211 1111100 122322 23332 45
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
+||+||+|+|.... .+... ..+..+..||+.|+
T Consensus 70 ~~DvvFlalPhg~s---------------~~~v~---~l~~~g~~VIDLSa 102 (349)
T COG0002 70 ECDVVFLALPHGVS---------------AELVP---ELLEAGCKVIDLSA 102 (349)
T ss_pred cCCEEEEecCchhH---------------HHHHH---HHHhCCCeEEECCc
Confidence 69999999874211 22222 23345666888887
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0061 Score=61.07 Aligned_cols=110 Identities=17% Similarity=0.199 Sum_probs=65.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHhhhcCCCE-EEecCH------
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNL-FFSTDV------ 72 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~--e~~l~~~~~~~~~~~l-~~t~d~------ 72 (362)
.||.|+|+|.+|+..+..+... |.+|+++|+++++.+..++-+..+. +..-++.. ..+.. ..+.+.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~---~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGS---GDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEEecccccccc---ccchhhhcchhHHHHHHH
Confidence 3899999999999777776666 8899999999999998876332211 11000000 00000 011121
Q ss_pred --HhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 73 --EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 73 --~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
.+.++++|+||.|+..|... .| ....++..+.++++.+|++-+.
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~-------aP-----~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKP-------AP-----KLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCccc-------Cc-----chHHHHHHHhcCCCCEEEEEcc
Confidence 12235799999998765421 11 1123556667788888876553
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0025 Score=62.77 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=53.3
Q ss_pred ceEEEEcCChhHH-HHHHHHHHc---CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGG-PTMAVIALK---CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~la~~---~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (362)
|||+|||.|..=+ .+...|++. .++-+|+++|+|+++++.+.+- ...+.++. ..-++..|+|.++|+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l--------~~~~~~~~g~~~~v~~Ttdr~eAl 72 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEA--------VKILFKENYPEIKFVYTTDPEEAF 72 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEECCHHHHh
Confidence 8999999998511 233344433 2467999999999998764430 11112211 123578899999999
Q ss_pred cCCcEEEEeccC
Q 017997 77 SEADIVFVSVNT 88 (362)
Q Consensus 77 ~~aDvVii~vpt 88 (362)
++||+||.++-.
T Consensus 73 ~gADfVi~~irv 84 (437)
T cd05298 73 TDADFVFAQIRV 84 (437)
T ss_pred CCCCEEEEEeee
Confidence 999999998753
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.026 Score=50.32 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=28.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~ 36 (362)
++|+|.|+|.+|..+|..|.+. |. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~--G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEE--GGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCEEEEEEcCCC
Confidence 5899999999999999999998 77 455678887
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0028 Score=61.40 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=57.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCC--CEEEecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCP-SIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGK--NLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~-G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~--~l~~t~d~~~a~~~ 78 (362)
.+++|||+|..+......++...| -.+|.+|+|++++.+++.+.. +....+ .+..+++.++++++
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~------------~~~~~~~~~v~~~~s~~eav~~ 223 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWV------------AETYPQITNVEVVDSIEEVVRG 223 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHH------------HHhcCCCceEEEeCCHHHHHcC
Confidence 479999999999999999887533 358999999999998776421 000011 26778899999999
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
||+|+.|+++
T Consensus 224 ADIVvtaT~s 233 (379)
T PRK06199 224 SDIVTYCNSG 233 (379)
T ss_pred CCEEEEccCC
Confidence 9999999764
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0037 Score=57.69 Aligned_cols=103 Identities=20% Similarity=0.345 Sum_probs=72.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-e---cCHHhhhcC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-S---TDVEKHVSE 78 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t---~d~~~a~~~ 78 (362)
||.|||.|.+|+--|....-- |-+|+..|+|.+++..+.. + ..+++.. . .++++++..
T Consensus 170 kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd------------~----f~~rv~~~~st~~~iee~v~~ 231 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDD------------L----FGGRVHTLYSTPSNIEEAVKK 231 (371)
T ss_pred cEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhH------------h----hCceeEEEEcCHHHHHHHhhh
Confidence 799999999999777666555 8999999999998877643 1 1233321 1 246677899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~ 135 (362)
+|++|=+|-.|-.. .| +-+.+++.+.++++.+||+-.-=..|+.+
T Consensus 232 aDlvIgaVLIpgak-------aP-----kLvt~e~vk~MkpGsVivDVAiDqGGc~E 276 (371)
T COG0686 232 ADLVIGAVLIPGAK-------AP-----KLVTREMVKQMKPGSVIVDVAIDQGGCFE 276 (371)
T ss_pred ccEEEEEEEecCCC-------Cc-----eehhHHHHHhcCCCcEEEEEEEcCCCcee
Confidence 99999988766433 33 23567888889999999875433344433
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0048 Score=57.55 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=44.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHH--HHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh--
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRI--NAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~--~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-- 76 (362)
+||+|||+|.+|..++..+.+. ++.++. ++|+|++.- +..++-+.+.+ .++.++.+
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-~~velvAVvdid~es~gla~A~~~Gi~~~------------------~~~ie~LL~~ 65 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-EHLEPGAMVGIDPESDGLARARRLGVATS------------------AEGIDGLLAM 65 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-CCcEEEEEEeCChhhHHHHHHHHcCCCcc------------------cCCHHHHHhC
Confidence 4899999999999988888764 467765 568887642 22232222222 23344433
Q ss_pred ---cCCcEEEEeccC
Q 017997 77 ---SEADIVFVSVNT 88 (362)
Q Consensus 77 ---~~aDvVii~vpt 88 (362)
.+.|+||+++|.
T Consensus 66 ~~~~dIDiVf~AT~a 80 (302)
T PRK08300 66 PEFDDIDIVFDATSA 80 (302)
T ss_pred cCCCCCCEEEECCCH
Confidence 468999999764
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0017 Score=55.55 Aligned_cols=53 Identities=28% Similarity=0.531 Sum_probs=43.5
Q ss_pred ceEEEEcCChh-HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYV-GGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|||.|.| |.++|..|.+. |.+|++.+++.+ +..+.+.++|
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~--g~~V~v~~r~~~---------------------------------~l~~~l~~aD 89 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNR--NATVTVCHSKTK---------------------------------NLKEHTKQAD 89 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhC--CCEEEEEECCch---------------------------------hHHHHHhhCC
Confidence 47999999986 99899999998 889999997621 2234588999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.|++.|
T Consensus 90 iVIsat~~~ 98 (168)
T cd01080 90 IVIVAVGKP 98 (168)
T ss_pred EEEEcCCCC
Confidence 999998865
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0011 Score=62.57 Aligned_cols=73 Identities=8% Similarity=0.099 Sum_probs=51.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||.|.| .|++|..++..|.++ ||+|++++|++++...+......+. .+.+.-.++..++++++|
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~--g~~V~~l~R~~~~~~~l~~~~v~~v------------~~Dl~d~~~l~~al~g~d 66 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE--GYQVRCLVRNLRKASFLKEWGAELV------------YGDLSLPETLPPSFKGVT 66 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCeEEEEEcChHHhhhHhhcCCEEE------------ECCCCCHHHHHHHHCCCC
Confidence 7999999 599999999999999 9999999999876554432111110 111221233456788999
Q ss_pred EEEEeccC
Q 017997 81 IVFVSVNT 88 (362)
Q Consensus 81 vVii~vpt 88 (362)
+||-+++.
T Consensus 67 ~Vi~~~~~ 74 (317)
T CHL00194 67 AIIDASTS 74 (317)
T ss_pred EEEECCCC
Confidence 99988653
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0037 Score=54.70 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=51.9
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe--cC---HHhh
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS--TD---VEKH 75 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t--~d---~~~a 75 (362)
+++.|+|. |.+|..++..|++. |++|++++|+.++.+.+.+.... .. ...+... .+ ..++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~--g~~V~l~~R~~~~~~~l~~~l~~--~~----------~~~~~~~~~~~~~~~~~~ 94 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE--GARVVLVGRDLERAQKAADSLRA--RF----------GEGVGAVETSDDAARAAA 94 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHh--hc----------CCcEEEeeCCCHHHHHHH
Confidence 58999995 99999999999998 89999999999988776542100 00 0112211 22 2356
Q ss_pred hcCCcEEEEeccCC
Q 017997 76 VSEADIVFVSVNTP 89 (362)
Q Consensus 76 ~~~aDvVii~vptp 89 (362)
++++|+||.++|.+
T Consensus 95 ~~~~diVi~at~~g 108 (194)
T cd01078 95 IKGADVVFAAGAAG 108 (194)
T ss_pred HhcCCEEEECCCCC
Confidence 78999999997643
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0033 Score=61.83 Aligned_cols=79 Identities=23% Similarity=0.261 Sum_probs=53.2
Q ss_pred ceEEEEcCChh-HHHHHHHHHHc---CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYV-GGPTMAVIALK---CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~la~~---~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (362)
|||+|||.|.. .-.+...|++. .++-+|+++|+|+++++.+.+- ...+.++. ..-++..|+|.++|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l--------~~~~~~~~g~~~~v~~ttD~~~Al 72 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTI--------AKRYVEEVGADIKFEKTMDLEDAI 72 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEeCCHHHHh
Confidence 79999999985 21233444432 2467999999999988764320 01111211 123478899999999
Q ss_pred cCCcEEEEeccC
Q 017997 77 SEADIVFVSVNT 88 (362)
Q Consensus 77 ~~aDvVii~vpt 88 (362)
++||+||.++-.
T Consensus 73 ~gADfVi~~irv 84 (425)
T cd05197 73 IDADFVINQFRV 84 (425)
T ss_pred CCCCEEEEeeec
Confidence 999999998753
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0005 Score=66.91 Aligned_cols=119 Identities=15% Similarity=0.184 Sum_probs=67.6
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE----ecC---HHhh
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF----STD---VEKH 75 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~----t~d---~~~a 75 (362)
|.|+|+|.+|..++..|++.. .+ +|++.|++.++++++.+... ..++.+ .+| +.+.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~-~~~~v~va~r~~~~~~~~~~~~~---------------~~~~~~~~~d~~~~~~l~~~ 64 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG-PFEEVTVADRNPEKAERLAEKLL---------------GDRVEAVQVDVNDPESLAEL 64 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT-CE-EEEEEESSHHHHHHHHT--T---------------TTTEEEEE--TTTHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHhhcc---------------ccceeEEEEecCCHHHHHHH
Confidence 789999999999999999883 35 89999999999998875310 011111 122 4456
Q ss_pred hcCCcEEEEeccCCCCCCCCC-----CCCCCChHHHHHHHHHHHhhc-CCCCEEEEeeCCccccHHHHH
Q 017997 76 VSEADIVFVSVNTPTKTQGLG-----AGKAADLTYWESAARVIADVS-KSDKIVVEKSTVPVKTAEAIE 138 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~-----~~~~~d~~~l~~~~~~i~~~l-~~~~iVv~~STv~~gt~~~l~ 138 (362)
++++|+||-|+|......-+. ...-.|.+++......+.+.. +.+..++....+.||.+.-+.
T Consensus 65 ~~~~dvVin~~gp~~~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a 133 (386)
T PF03435_consen 65 LRGCDVVINCAGPFFGEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLA 133 (386)
T ss_dssp HTTSSEEEE-SSGGGHHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHH
T ss_pred HhcCCEEEECCccchhHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHH
Confidence 789999999997432110000 001223332222233332222 356777777778899877553
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.018 Score=50.86 Aligned_cols=67 Identities=12% Similarity=0.259 Sum_probs=45.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH-HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecC-H-HhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTD-V-EKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~-~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d-~-~~a~~~ 78 (362)
++|.|||.|.||...+..|.+. |++|++++++. +.+..+... +.+.+... + ...+.+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~~~~l~~l~~~------------------~~i~~~~~~~~~~~l~~ 70 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKY--GAHIVVISPELTENLVKLVEE------------------GKIRWKQKEFEPSDIVD 70 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHhC------------------CCEEEEecCCChhhcCC
Confidence 4899999999999999999998 89999997653 222333221 12222111 1 123789
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
+|+||.|++.
T Consensus 71 adlViaaT~d 80 (202)
T PRK06718 71 AFLVIAATND 80 (202)
T ss_pred ceEEEEcCCC
Confidence 9999999654
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0034 Score=64.23 Aligned_cols=70 Identities=14% Similarity=0.272 Sum_probs=51.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCC-C-CCChHHHHhhhcCCCEEEecCHHh-hhcCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPI-Y-EPGLDGVVKQCRGKNLFFSTDVEK-HVSEA 79 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~-~-e~~l~~~~~~~~~~~l~~t~d~~~-a~~~a 79 (362)
+|-|+|+|.+|..+|..|.++ |++|+++|.|+++++.+++...+. + ++.-++. +++ -++++
T Consensus 419 hiiI~G~G~~G~~la~~L~~~--g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~--------------L~~a~i~~a 482 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAA--GIPLVVIETSRTRVDELRERGIRAVLGNAANEEI--------------MQLAHLDCA 482 (558)
T ss_pred CEEEECCChHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHH--------------HHhcCcccc
Confidence 588999999999999999999 999999999999999987633222 1 1111111 111 25789
Q ss_pred cEEEEeccC
Q 017997 80 DIVFVSVNT 88 (362)
Q Consensus 80 DvVii~vpt 88 (362)
|.++++++.
T Consensus 483 ~~viv~~~~ 491 (558)
T PRK10669 483 RWLLLTIPN 491 (558)
T ss_pred CEEEEEcCC
Confidence 999999764
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.003 Score=58.39 Aligned_cols=70 Identities=21% Similarity=0.373 Sum_probs=54.0
Q ss_pred ceEEEEcCChh-HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYV-GGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|||.|.+ |.|+|..|.+. |.+|+++... |.|+.+.+++||
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~--~atVt~~hs~---------------------------------t~~l~~~~~~AD 203 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQA--GATVTICHSK---------------------------------TRDLAAHTRQAD 203 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEecCC---------------------------------CCCHHHHhhhCC
Confidence 47999999887 99999999998 8999986531 234556689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+||.++|+|-- +.. ..++++++||+-
T Consensus 204 IVV~avG~~~~--------------i~~------~~ik~gavVIDV 229 (285)
T PRK14189 204 IVVAAVGKRNV--------------LTA------DMVKPGATVIDV 229 (285)
T ss_pred EEEEcCCCcCc--------------cCH------HHcCCCCEEEEc
Confidence 99999997631 111 567899998863
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.019 Score=53.52 Aligned_cols=105 Identities=12% Similarity=0.107 Sum_probs=66.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC-HHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS-VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~-~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+++|+|+|.+|+-+|.++-.- |..|++||.- +.... .+ -++.+. +.++++..||
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~--gm~vI~~dpi~~~~~~--~a-------------------~gvq~v-sl~Eil~~AD 202 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAM--GMHVIGYDPITPMALA--EA-------------------FGVQLV-SLEEILPKAD 202 (406)
T ss_pred cEEEEeecccchHHHHHHHHhc--CceEEeecCCCchHHH--Hh-------------------ccceee-eHHHHHhhcC
Confidence 3689999999999999998877 8899999863 22111 11 123443 3567899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHh
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~ 143 (362)
+|-+=+| . .|+++.+.+ +.-...+++|.-||+.|--..=.+..+.+.++.
T Consensus 203 FitlH~P--L---------tP~T~~lin--~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 203 FITLHVP--L---------TPSTEKLLN--DETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred EEEEccC--C---------CcchhhccC--HHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 8877655 3 233343322 233445789999998764222223455555554
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.02 Score=56.84 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=31.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|.|+|.|.+|.++|..|++. |++|+++|++.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~--G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL--GAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 4899999999999999999999 99999999975
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.002 Score=55.52 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=33.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSD 45 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~ 45 (362)
||.|||+|.+|+.++..|++. |. +++++|.|.-....++++
T Consensus 1 ~VlViG~GglGs~ia~~La~~--Gvg~i~lvD~D~v~~sNl~Rq 42 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS--GVGNLKLVDFDVVEPSNLNRQ 42 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCEEcCcchhcc
Confidence 689999999999999999999 76 599999986333444433
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.012 Score=54.16 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=61.7
Q ss_pred ceEEEEcCChhHHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHh---hh
Q 017997 2 VKICCIGAGYVGGPTMAVIAL-KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEK---HV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~-~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~---a~ 76 (362)
.||++||.|.+-++. ..|++ .+++..|.++|+|++.++..++=.. ...++ ..++++ +.|..+ .+
T Consensus 122 ~rVaFIGSGPLPlT~-i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~--~~~~L--------~~~m~f~~~d~~~~~~dl 190 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTS-IVLAKQHGPGARVHNIDIDPEANELARRLVA--SDLGL--------SKRMSFITADVLDVTYDL 190 (276)
T ss_dssp -EEEEE---SS-HHH-HHHH--HTT--EEEEEESSHHHHHHHHHHHH-----HH---------SSEEEEES-GGGG-GG-
T ss_pred ceEEEEcCCCcchHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHh--hcccc--------cCCeEEEecchhcccccc
Confidence 389999999999854 45553 3345679999999998875433000 00111 234444 334322 25
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhcc-CCCceEEeeC
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGIKFQILSN 155 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~-~g~~~~v~~~ 155 (362)
.++|+|+++---.. |-+.-.++++.+.+++++|+.|+.+|.-.. -.-+.+.+.... .|.+.....+
T Consensus 191 ~~~DvV~lAalVg~-----------~~e~K~~Il~~l~~~m~~ga~l~~Rsa~Gl--R~~LYp~vd~~~l~gf~~~~~~h 257 (276)
T PF03059_consen 191 KEYDVVFLAALVGM-----------DAEPKEEILEHLAKHMAPGARLVVRSAHGL--RSFLYPVVDPEDLRGFEVLAVVH 257 (276)
T ss_dssp ---SEEEE-TT-S---------------SHHHHHHHHHHHS-TTSEEEEEE--GG--GGGSS----TGGGTTEEEEEEE-
T ss_pred ccCCEEEEhhhccc-----------ccchHHHHHHHHHhhCCCCcEEEEecchhh--HHHcCCCCChHHCCCeEEEEEEC
Confidence 78999999954321 112347899999999999999999875322 222344433221 2433344556
Q ss_pred Cc
Q 017997 156 PE 157 (362)
Q Consensus 156 Pe 157 (362)
|+
T Consensus 258 P~ 259 (276)
T PF03059_consen 258 PT 259 (276)
T ss_dssp --
T ss_pred CC
Confidence 64
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0046 Score=63.90 Aligned_cols=72 Identities=10% Similarity=0.245 Sum_probs=53.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
.+|-|+|.|.+|..+|..|.++ |++++++|.|+++++.+++...+.+ +..-.+.++ +.-++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~-------------~agi~~A 465 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLE-------------SAGAAKA 465 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHH-------------hcCCCcC
Confidence 3689999999999999999998 9999999999999999886433321 111111111 0125689
Q ss_pred cEEEEeccC
Q 017997 80 DIVFVSVNT 88 (362)
Q Consensus 80 DvVii~vpt 88 (362)
|.+++++++
T Consensus 466 ~~vvv~~~d 474 (621)
T PRK03562 466 EVLINAIDD 474 (621)
T ss_pred CEEEEEeCC
Confidence 999999764
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.003 Score=54.00 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=65.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHh------h-hcCCCEEEecCHHh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK------Q-CRGKNLFFSTDVEK 74 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~------~-~~~~~l~~t~d~~~ 74 (362)
.||.|+|.|.+|..-+..+... |++|+.+|.++++.+.+........+....+... + ...........+.+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 98 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE 98 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence 5899999999999988888888 9999999999998887765322111100000000 0 00000011123455
Q ss_pred hhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 75 HVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
.++.+|+||.+.--+-.. .| .-+.++..+.++++.+|++-|.
T Consensus 99 ~i~~~d~vI~~~~~~~~~-------~P-----~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 99 FIAPADIVIGNGLYWGKR-------AP-----RLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHH-SEEEEHHHBTTSS---------------SBEHHHHHTSSTTEEEEETTG
T ss_pred HHhhCcEEeeecccCCCC-------CC-----EEEEhHHhhccCCCceEEEEEe
Confidence 678999999876543221 22 2233555666889999988553
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0051 Score=56.95 Aligned_cols=53 Identities=23% Similarity=0.421 Sum_probs=44.2
Q ss_pred ceEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|||.|. +|.++|..|... |.+|+.+++.. .++.+.+++||
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~--gatVtv~~s~t---------------------------------~~l~~~~~~AD 203 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQK--NASVTILHSRS---------------------------------KDMASYLKDAD 203 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCeEEEEeCCc---------------------------------hhHHHHHhhCC
Confidence 4799999988 999999999988 89999998631 13445588999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.+++.|
T Consensus 204 IVIsAvg~p 212 (286)
T PRK14175 204 VIVSAVGKP 212 (286)
T ss_pred EEEECCCCC
Confidence 999999876
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0049 Score=59.92 Aligned_cols=78 Identities=24% Similarity=0.300 Sum_probs=54.3
Q ss_pred ceEEEEcCChhHHHHHH--HHHH--cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGGPTMA--VIAL--KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~--~la~--~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (362)
+||+|||.|..+.+--. .+.+ ..|+.++.++|+++++.+.+..- .+.++++. ..-++..|+|.++|+
T Consensus 4 ~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~--------~~~~v~~~g~~~kv~~ttd~~eAl 75 (442)
T COG1486 4 FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAIL--------AKKLVEEAGAPVKVEATTDRREAL 75 (442)
T ss_pred ceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEecCHHHHh
Confidence 58999999999986432 1221 23577999999999998843320 12223321 123478899999999
Q ss_pred cCCcEEEEecc
Q 017997 77 SEADIVFVSVN 87 (362)
Q Consensus 77 ~~aDvVii~vp 87 (362)
++||+|+.++-
T Consensus 76 ~gAdfVi~~~r 86 (442)
T COG1486 76 EGADFVITQIR 86 (442)
T ss_pred cCCCEEEEEEe
Confidence 99999999975
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.037 Score=50.21 Aligned_cols=200 Identities=16% Similarity=0.160 Sum_probs=108.1
Q ss_pred CEEEecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 65 NLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 65 ~l~~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
+++.++|-.+|++++|++++-+| ... . -...++.+.++++.+.+|.++.|+|+-.. ...++..
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftP--fG~--------~----t~~Iikki~~~ipEgAII~~tCTIpt~~l---y~~le~l 190 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLP--KGG--------M----QPDIIEKFADDIKEGAIVTHACTIPTTKF---AKIFKDL 190 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecC--CCC--------C----chHHHHHHHhhCCCCCEEeccccCCHHHH---HHHHHHh
Confidence 35677777788999999999965 322 1 14578899999999999999999987543 3344443
Q ss_pred cCCCceEE-eeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeC-Ch--hHHHHHHHH--
Q 017997 145 SKGIKFQI-LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT-NL--WSAELSKLA-- 218 (362)
Q Consensus 145 ~~g~~~~v-~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~--~~ae~~Kl~-- 218 (362)
.+ .++.+ .|+|- ..||.. -++.++. .-.+++..+++.+|-++.. +..+... +. ..+.|.-++
T Consensus 191 ~R-~DvgIsS~HPa-aVPgt~-------Gq~~i~e--gyAtEEqI~klveL~~sa~-k~ay~~PA~lvspV~DMgS~VTA 258 (342)
T PRK00961 191 GR-DDLNVTSYHPG-AVPEMK-------GQVYIAE--GYADEEAVEKLYEIGKKAR-GNAFKMPANLIGPVCDMCSAVTA 258 (342)
T ss_pred Cc-ccCCeeccCCC-CCCCCC-------Cceeccc--ccCCHHHHHHHHHHHHHhC-CCeeecchhhcchhhhHHHHHHH
Confidence 22 23333 36774 334443 1233441 2335888999999988876 3444332 21 112222211
Q ss_pred --HhH---HHHHHHHHHHHHHHHHHHhC-CCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchh
Q 017997 219 --ANA---FLAQRISSVNAMSALCEATG-ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEV 292 (362)
Q Consensus 219 --~N~---~~~~~ia~~nE~~~l~~~~g-~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~ 292 (362)
--+ |++.-...++-=..+.+.+- ...+++..++... |+.|--=--||.+|+..|++..+-+.
T Consensus 259 v~~aGiL~Y~~~~tqIlgAP~~mie~qa~eaL~tmasLme~~------------GI~gm~~aLnPeaL~~tAdSM~~~~~ 326 (342)
T PRK00961 259 IVYAGILAYRDAVTQILGAPADFAQMMADEALTQITALMREE------------GIDNMEEALDPGALLGTADSMCFGPL 326 (342)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHh------------hHhHHHHhcCHHHHhhhhhhcccchH
Confidence 111 12111122221122222211 1223333333322 33332223377788888888766555
Q ss_pred HHHHHHHHHHHHH
Q 017997 293 AEYWKQVIKINDY 305 (362)
Q Consensus 293 ~~~~~~~~~~N~~ 305 (362)
.+.+.+++++=+.
T Consensus 327 q~~L~~aL~vLek 339 (342)
T PRK00961 327 ADILPTALKVLEK 339 (342)
T ss_pred HHHHHHHHHHHHh
Confidence 6677777766544
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.028 Score=50.59 Aligned_cols=198 Identities=16% Similarity=0.139 Sum_probs=101.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHH-HHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC--PSIEVAVVDISVSRINA-WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~--~G~~V~~~d~~~~~~~~-l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
|+|++||.|+|-..++..+...+ +..+++.+-.+...... ++. .+--.+.++ .+.++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~------------------~g~~~~~~n-~~~~~~ 61 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEA------------------LGVKTVFTN-LEVLQA 61 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhc------------------CCceeeech-HHHHhh
Confidence 79999999999999998887762 11234444332111111 221 121233344 667899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceE-EeeCCc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQ-ILSNPE 157 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~-v~~~Pe 157 (362)
+|++++||. |. .+.+++.++...+..+++|+. -.-.-+...+...+.... .-+. ..-.|+
T Consensus 62 s~v~~~svK-p~--------------~i~~vls~~~~~~~~~~iivS--~aaG~tl~~l~~~l~~~~--rviRvmpNtp~ 122 (267)
T KOG3124|consen 62 SDVVFLSVK-PQ--------------VIESVLSEIKPKVSKGKIIVS--VAAGKTLSSLESKLSPPT--RVIRVMPNTPS 122 (267)
T ss_pred ccceeEeec-ch--------------hHHHHhhcCccccccceEEEE--EeecccHHHHHHhcCCCC--ceEEecCCChh
Confidence 999999997 32 246677777766667777762 222223344544443111 0111 123556
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
.+++|.. ++..+. ....+..+.++++++..+ ....+...----.+.+.... -+....++.-++.-.
T Consensus 123 ~v~eg~s---------v~~~g~--~~~~~D~~l~~~ll~~vG--~~~evpE~~iDavTgLsGSg-PAy~f~~ieaLadGg 188 (267)
T KOG3124|consen 123 VVGEGAS---------VYAIGC--HATNEDLELVEELLSAVG--LCEEVPEKCIDAVTGLSGSG-PAYVFVAIEALADGG 188 (267)
T ss_pred hhhcCcE---------EEeeCC--CcchhhHHHHHHHHHhcC--cceeCcHHhhhHHhhccCCc-HHHHHHHHHHHhccc
Confidence 6666654 222222 112455688888988875 22222211111111121111 112223344455566
Q ss_pred HHhCCCHHHHHHHh
Q 017997 238 EATGANVSQVAFAV 251 (362)
Q Consensus 238 ~~~g~d~~~v~~~~ 251 (362)
-++|+..+.-.+..
T Consensus 189 VkmGlPr~lA~~la 202 (267)
T KOG3124|consen 189 VKMGLPRQLAYRLA 202 (267)
T ss_pred cccCCCHHHHHHHH
Confidence 66777766555543
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0038 Score=59.55 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=43.4
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCe---EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIE---VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~---V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
||||+|+| .|++|.-+...|+++ +|+ +..+.++++.-+.+. + . ...+.+.+.....+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~--~hp~~~l~~l~s~~~~g~~l~-----~--~----------g~~i~v~d~~~~~~ 61 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER--NFPVDKLRLLASARSAGKELS-----F--K----------GKELKVEDLTTFDF 61 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC--CCCcceEEEEEccccCCCeee-----e--C----------CceeEEeeCCHHHH
Confidence 68999999 599999999999987 665 466655433221111 0 0 01233332112236
Q ss_pred cCCcEEEEeccC
Q 017997 77 SEADIVFVSVNT 88 (362)
Q Consensus 77 ~~aDvVii~vpt 88 (362)
+++|+||.|+|.
T Consensus 62 ~~vDvVf~A~g~ 73 (334)
T PRK14874 62 SGVDIALFSAGG 73 (334)
T ss_pred cCCCEEEECCCh
Confidence 799999999773
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.014 Score=57.88 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=38.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++|.|+|+|.+|..++..|.+. |++|+++|.++++++.+++
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~--~~~v~vid~~~~~~~~~~~ 272 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE--GYSVKLIERDPERAEELAE 272 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHH
Confidence 6899999999999999999998 9999999999999998875
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0071 Score=57.77 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=34.6
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
||+|.|.|+ |++|..++..|.+.+ |++|+++|++.+....+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~-~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETT-DWEVYGMDMQTDRLGDL 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCC-CCeEEEEeCcHHHHHHh
Confidence 789999996 999999999998752 69999999987665544
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0058 Score=58.31 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=33.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.+|.|||+|.+|+.+|..|++. |+ +++++|.|.-....|++
T Consensus 25 ~~VlIiG~GglGs~va~~La~a--Gvg~i~lvD~D~ve~sNL~R 66 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRA--GIGKLTIADRDYVEWSNLQR 66 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCcccccccCc
Confidence 4799999999999999999999 77 89999998644444443
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.024 Score=50.92 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=33.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeC----------CHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDI----------SVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~----------~~~~~~~l~~ 44 (362)
++|+|.|.|.+|..+|..|.+. |.+|+ +.|. |.+.+..+.+
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~--g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~ 83 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEA--GAKVVAVSDSDGTIYNPDGLDVPALLAYKK 83 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCeEECCCCCCHHHHHHHHH
Confidence 5899999999999999999998 99999 5576 6666555443
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.013 Score=49.62 Aligned_cols=72 Identities=24% Similarity=0.391 Sum_probs=48.7
Q ss_pred ceEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|.|||-+ .+|.|++..|.++ |..|+..+.. |.++++.+++||
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~--~atVt~~h~~---------------------------------T~~l~~~~~~AD 81 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNK--GATVTICHSK---------------------------------TKNLQEITRRAD 81 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHT--T-EEEEE-TT---------------------------------SSSHHHHHTTSS
T ss_pred CEEEEECCcCCCChHHHHHHHhC--CCeEEeccCC---------------------------------CCcccceeeecc
Confidence 589999977 6999999999999 8999998753 134555688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
+||.+++.|--. . ...++++.+||+.++
T Consensus 82 IVVsa~G~~~~i--------------~------~~~ik~gavVIDvG~ 109 (160)
T PF02882_consen 82 IVVSAVGKPNLI--------------K------ADWIKPGAVVIDVGI 109 (160)
T ss_dssp EEEE-SSSTT-B---------------------GGGS-TTEEEEE--C
T ss_pred EEeeeecccccc--------------c------cccccCCcEEEecCC
Confidence 999999865311 1 245789999887443
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0045 Score=60.94 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=31.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~ 38 (362)
.+|.|||+|.+|.++|..|.+. |++|+++|++++.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~--G~~V~g~D~~~~~ 38 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK--GVYVIGVDKSLEA 38 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC--CCEEEEEeCCccc
Confidence 5899999999999999999998 9999999987654
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.022 Score=54.46 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=19.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALK 23 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~ 23 (362)
+||+|+|+|.||..++..|.+.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 6899999999999999988754
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.04 Score=55.43 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=48.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|.|+|+|..|.+.+..|... |++|+++|.+++..+.+.+.... +....+..+.++++|+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~--G~~v~~~D~~~~~~~~l~~~g~~-----------------~~~~~~~~~~l~~~D~ 73 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF--GARPTVCDDDPDALRPHAERGVA-----------------TVSTSDAVQQIADYAL 73 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHhCCCE-----------------EEcCcchHhHhhcCCE
Confidence 4799999999999999888888 99999999887766555431111 1111122233678899
Q ss_pred EEEeccCCC
Q 017997 82 VFVSVNTPT 90 (362)
Q Consensus 82 Vii~vptp~ 90 (362)
||.+-.-|.
T Consensus 74 VV~SpGi~~ 82 (488)
T PRK03369 74 VVTSPGFRP 82 (488)
T ss_pred EEECCCCCC
Confidence 998865543
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.083 Score=48.10 Aligned_cols=200 Identities=14% Similarity=0.150 Sum_probs=107.9
Q ss_pred CEEEecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 65 NLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 65 ~l~~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
+++.++|-.+|++++|++++-+| .... . ...++.+.++++.+.+|..+.|+|+-.. ..+++..
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftP--fG~~------q------~~Iikkii~~lpEgAII~~tCTIpt~~l---y~ilE~l 188 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLP--KGNK------Q------PDIIKKFIDDIPEGAIVTHACTIPTTKF---AKIFEDL 188 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcC--CCCC------c------hHHHHHHHhhCCCCCEEeccccCChHHH---HHHHHhh
Confidence 35677777788999999999965 3220 1 4578899999999999999999987543 3334443
Q ss_pred cCCCceEE-eeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeC-Ch--hHHHHHHHH--
Q 017997 145 SKGIKFQI-LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT-NL--WSAELSKLA-- 218 (362)
Q Consensus 145 ~~g~~~~v-~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~--~~ae~~Kl~-- 218 (362)
++ .++.+ .|+|- ..||.. .. ..++-+. .+++..+++.+|-++.. +..+... +. ..+.|.-++
T Consensus 189 ~R-~DvgVsS~HPa-aVPgt~-----~q-~Yi~egy---AtEEqI~klveL~~sa~-k~ay~~PA~LvspV~DMgS~VTA 256 (340)
T TIGR01723 189 GR-EDLNVTSYHPG-CVPEMK-----GQ-VYIAEGY---ASEEAVNKLYELGKKAR-GKAFKMPANLLGPVCDMCSAVTA 256 (340)
T ss_pred Cc-ccCCeeccCCC-CCCCCC-----Cc-eEeeccc---CCHHHHHHHHHHHHHhC-CCeeecchhhccchhhHHHHHHH
Confidence 22 23333 36774 335543 11 1223223 35889999999988876 3444332 21 112222211
Q ss_pred --HhH---HHHHHHHHHHHHHHHHHHh-CCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchh
Q 017997 219 --ANA---FLAQRISSVNAMSALCEAT-GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEV 292 (362)
Q Consensus 219 --~N~---~~~~~ia~~nE~~~l~~~~-g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~ 292 (362)
--+ |++.-...++-=..+++.+ .....++..++... |+.|--=--||.+|+..|++..+-+.
T Consensus 257 v~~aGiL~Y~~~~t~IlgAP~~miq~qa~eaL~tmasLme~~------------GI~gm~~aLnPeaL~~tAdSM~~~~~ 324 (340)
T TIGR01723 257 IVYAGLLAYRDAVTKILGAPADFAQMMADEALTQIHNLMEEK------------GIDKMEEALDPAALLGTADSMNFGPL 324 (340)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHh------------hHHHHHHhcCHHHHhhhhhhcccchH
Confidence 111 1211111222112222221 11223333333321 33332223377788888888766555
Q ss_pred HHHHHHHHHHHHH
Q 017997 293 AEYWKQVIKINDY 305 (362)
Q Consensus 293 ~~~~~~~~~~N~~ 305 (362)
.+++.+++++=+.
T Consensus 325 q~~L~~aL~vLe~ 337 (340)
T TIGR01723 325 ADILPTALEVLEK 337 (340)
T ss_pred HHHHHHHHHHHHh
Confidence 6677777766543
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.018 Score=48.60 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=31.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
.+|.|||.|.+|...+..|.+. |++|++++. +..+.+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~--ga~V~VIsp--~~~~~l~ 51 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDT--GAFVTVVSP--EICKEMK 51 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcC--ccCHHHH
Confidence 4799999999999999999998 999999963 4444443
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.015 Score=43.66 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=27.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
.+++|+|.|.+|.+++..+.+.+ +.+|.+||+
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 48999999999999999999873 467877775
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.038 Score=55.08 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.||.|+|+|.-|.++|..|.+. |++|+++|.++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~--G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL--GAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHC--CCEEEEECCCC
Confidence 5899999999999999999999 99999999864
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.013 Score=54.10 Aligned_cols=70 Identities=26% Similarity=0.396 Sum_probs=54.4
Q ss_pred ceEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|||-|. +|.|+|..|... |..|+.+... |.++.+.+++||
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 204 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLA--GCTVTVCHRF---------------------------------TKNLRHHVRNAD 204 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHC--CCeEEEEECC---------------------------------CCCHHHHHhhCC
Confidence 4799999988 999999999988 8999998753 234556688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+||.+++.|.- +. ..+++++++|++-
T Consensus 205 Ivi~avG~p~~--------------v~------~~~vk~gavVIDv 230 (285)
T PRK10792 205 LLVVAVGKPGF--------------IP------GEWIKPGAIVIDV 230 (285)
T ss_pred EEEEcCCCccc--------------cc------HHHcCCCcEEEEc
Confidence 99999976521 11 1567899999863
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.04 Score=52.93 Aligned_cols=97 Identities=23% Similarity=0.273 Sum_probs=58.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCC-CCCChHHHHhhhcCCCEEEecCHHhhh--cC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPI-YEPGLDGVVKQCRGKNLFFSTDVEKHV--SE 78 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~-~~~~~-~e~~l~~~~~~~~~~~l~~t~d~~~a~--~~ 78 (362)
++.|+|+|.||+-.++.+...+ -.+|++.|+++++++..++ +.... ..+.-+.... ...+.. ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~-----------~~~~~t~g~g 238 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGA-----------EILELTGGRG 238 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHH-----------HHHHHhCCCC
Confidence 6899999999996655555552 3689999999999998876 32211 1100000000 000111 36
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCC
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv 129 (362)
+|++|.|++++ .++++..+.++++-.|+.-+..
T Consensus 239 ~D~vie~~G~~------------------~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 239 ADVVIEAVGSP------------------PALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCEEEECCCCH------------------HHHHHHHHHhcCCCEEEEEecc
Confidence 99999998742 3555666666776666554543
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.012 Score=57.96 Aligned_cols=68 Identities=22% Similarity=0.339 Sum_probs=45.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC--------CCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC--------PSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDV 72 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~--------~G~~V-~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~ 72 (362)
+||+|+|+|.||..++..|.++. .+.+| .++|+++++.+.+. .....+++|+
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-------------------~~~~~~~~d~ 64 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-------------------LPGILLTTDP 64 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-------------------CcccceeCCH
Confidence 58999999999999988876541 12344 45688866532110 0123467888
Q ss_pred Hhhhc--CCcEEEEeccC
Q 017997 73 EKHVS--EADIVFVSVNT 88 (362)
Q Consensus 73 ~~a~~--~aDvVii~vpt 88 (362)
++.+. +.|+|++|+++
T Consensus 65 ~~ll~d~~iDvVve~tg~ 82 (426)
T PRK06349 65 EELVNDPDIDIVVELMGG 82 (426)
T ss_pred HHHhhCCCCCEEEECCCC
Confidence 88764 57999999764
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.017 Score=55.41 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=47.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCC-ChHHHHhhhcCCCEEEe-cCHHhhhcC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEP-GLDGVVKQCRGKNLFFS-TDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~-~l~~~~~~~~~~~l~~t-~d~~~a~~~ 78 (362)
+||+|+| .|++|..+...|.+. |..+++++..+++...+......++.+. .+... ...+.+. .+++. +.+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~-~~~ 76 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEE-----VADMEVVSTDPEA-VDD 76 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-CCceEEEEEcChhhcCCccccccccccccccccc-----ccceEEEeCCHHH-hcC
Confidence 6999998 899999999999875 4669999876664433211111111100 00000 0123332 34444 689
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
+|+||.|+|.
T Consensus 77 ~DvVf~a~p~ 86 (349)
T PRK08664 77 VDIVFSALPS 86 (349)
T ss_pred CCEEEEeCCh
Confidence 9999999874
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.017 Score=53.50 Aligned_cols=70 Identities=30% Similarity=0.408 Sum_probs=53.0
Q ss_pred ceEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|||-| .+|.|+|..|.++ |..|+++... |.++.+.+++||
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~--gAtVtv~hs~---------------------------------t~~l~~~~~~AD 202 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNA--GASVSVCHIL---------------------------------TKDLSFYTQNAD 202 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCEEEEEeCC---------------------------------cHHHHHHHHhCC
Confidence 479999999 9999999999998 8999988532 123445588999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+||.+++.|--. . ...++++.+|++.
T Consensus 203 IvV~AvG~p~~i--------------~------~~~vk~GavVIDv 228 (285)
T PRK14191 203 IVCVGVGKPDLI--------------K------ASMVKKGAVVVDI 228 (285)
T ss_pred EEEEecCCCCcC--------------C------HHHcCCCcEEEEe
Confidence 999999866321 1 1345889998863
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.021 Score=56.18 Aligned_cols=117 Identities=19% Similarity=0.162 Sum_probs=68.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec--CHHhhhcC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST--DVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~--d~~~a~~~ 78 (362)
+|||.|+|+|.-|.+.|..|.+. |++|+++|.++.. +..... +..++ ++.+.. ...+....
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~--G~~v~v~D~~~~~-~~~~~~--~~~~~------------~i~~~~g~~~~~~~~~ 69 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL--GAEVTVSDDRPAP-EGLAAQ--PLLLE------------GIEVELGSHDDEDLAE 69 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC--CCeEEEEcCCCCc-cchhhh--hhhcc------------CceeecCccchhcccc
Confidence 37999999999999999999999 9999999977654 111000 00011 111111 11134778
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH-------H--HHhhc-CCCCEEEEeeCCccccH-HHHHHHHHhcc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR-------V--IADVS-KSDKIVVEKSTVPVKTA-EAIEKILTHNS 145 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~-------~--i~~~l-~~~~iVv~~STv~~gt~-~~l~~~l~~~~ 145 (362)
+|+|+..=.-|.+ ...+..+.. . +.-.. .+..+|.++.|..-.|| ..+..++.+.+
T Consensus 70 ~d~vV~SPGi~~~-----------~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G 136 (448)
T COG0771 70 FDLVVKSPGIPPT-----------HPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAG 136 (448)
T ss_pred CCEEEECCCCCCC-----------CHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 9999988444432 223333321 1 11112 24458877888765555 44566776643
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.019 Score=54.38 Aligned_cols=85 Identities=13% Similarity=0.206 Sum_probs=53.6
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcC-CCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSD-QLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|+|+|+|.+|..++..+.+. ++.+|+++ |.+++....+... +.+.+. ...+.........+....++++.+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~-~d~elVaVnD~~~~~~a~lA~~lgyds~~-~~~~~~~~~~~~~l~v~g~~eeLl~~vDi 78 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-DDMKLVGVTKTSPDFEAYRAKELGIPVYA-ASEEFIPRFEEAGIEVAGTLEDLLEKVDI 78 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-CCcEEEEEecCChHHHHHHHHHhCCCEEe-ecCCcceEeccCceEecCCHHHHhhcCCE
Confidence 68999999999999998765 47787765 7777755444431 112211 00000000012346666778888899999
Q ss_pred EEEeccCCC
Q 017997 82 VFVSVNTPT 90 (362)
Q Consensus 82 Vii~vptp~ 90 (362)
|+.|+|...
T Consensus 79 Vve~Tp~~~ 87 (333)
T TIGR01546 79 VVDATPGGI 87 (333)
T ss_pred EEECCCCCC
Confidence 999977543
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.005 Score=54.84 Aligned_cols=69 Identities=16% Similarity=0.369 Sum_probs=43.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--C
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~-~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (362)
.+|+|||+|.+|..++..+....+|+++++ +|.++++......+ .+ +...+++.+.++ +
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g-~~-----------------v~~~~~l~~li~~~~ 146 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGG-IP-----------------VYHIDELEEVVKEND 146 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCC-eE-----------------EcCHHHHHHHHHHCC
Confidence 479999999999999886432223888776 58887655321111 11 111234445443 5
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
.|.+++|+|.
T Consensus 147 iD~ViIa~P~ 156 (213)
T PRK05472 147 IEIGILTVPA 156 (213)
T ss_pred CCEEEEeCCc
Confidence 9999999874
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.074 Score=53.29 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=30.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.+|.|||.|..|..+|..|++. |++|+++|.++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~--G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL--GARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 4799999999999999999998 99999999654
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.038 Score=48.90 Aligned_cols=65 Identities=11% Similarity=0.203 Sum_probs=45.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec---CHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST---DVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~-~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~---d~~~a~~ 77 (362)
.+|.|||.|.+|..-+..|.+. |.+|++++.+.. .++.+.+. +++++.. +.. .+.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~~------------------~~i~~~~~~~~~~-dl~ 68 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAEQ------------------GGITWLARCFDAD-ILE 68 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHHc------------------CCEEEEeCCCCHH-HhC
Confidence 4799999999999999999998 899999987542 23333221 2333211 222 378
Q ss_pred CCcEEEEecc
Q 017997 78 EADIVFVSVN 87 (362)
Q Consensus 78 ~aDvVii~vp 87 (362)
++++||+|++
T Consensus 69 ~~~lVi~at~ 78 (205)
T TIGR01470 69 GAFLVIAATD 78 (205)
T ss_pred CcEEEEECCC
Confidence 9999999965
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.039 Score=52.24 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=34.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
.+|+|+|+|-+|. +|..+|++- |.+|+++|+++++.+..++
T Consensus 168 ~~V~I~G~GGlGh-~avQ~Aka~-ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 168 KWVAVVGAGGLGH-MAVQYAKAM-GAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CEEEEECCcHHHH-HHHHHHHHc-CCeEEEEeCChHHHHHHHH
Confidence 3799999998886 677777642 8999999999999987765
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.006 Score=59.74 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=31.7
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|.+|.|||.|.+|+++|..|++. |++|+++|+++
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~--g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR--GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 56999999999999999999998 99999999874
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.27 Score=47.13 Aligned_cols=141 Identities=18% Similarity=0.226 Sum_probs=77.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-CCC-CCCCChHHHHhhhcCCCEEE-ecCHHhhh--
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-QLP-IYEPGLDGVVKQCRGKNLFF-STDVEKHV-- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~-~~~-~~e~~l~~~~~~~~~~~l~~-t~d~~~a~-- 76 (362)
.+|.|||+| .|.. +..+.+..+.-+|+++|+|++.++..++- ..+ +....+ ...++++ ..|..+-+
T Consensus 152 krVLIIGgG-dG~t-lrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~-------~DpRV~vvi~Da~~fL~~ 222 (374)
T PRK01581 152 KRVLILGGG-DGLA-LREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF-------FDNRVNVHVCDAKEFLSS 222 (374)
T ss_pred CEEEEECCC-HHHH-HHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC-------CCCceEEEECcHHHHHHh
Confidence 479999988 4443 34455542246899999999999877741 000 000000 0123433 23433322
Q ss_pred --cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH---HHHHHHHhccCCCceE
Q 017997 77 --SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE---AIEKILTHNSKGIKFQ 151 (362)
Q Consensus 77 --~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~---~l~~~l~~~~~g~~~~ 151 (362)
...|+||+-+|.|... ...--+-.+.++.+.+.|+++.+++..+..+....+ .+...+++.......+
T Consensus 223 ~~~~YDVIIvDl~DP~~~-------~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 223 PSSLYDVIIIDFPDPATE-------LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred cCCCccEEEEcCCCcccc-------chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEE
Confidence 3579999998766432 111123356788899999999988776654432222 2334454443212223
Q ss_pred EeeCCcc
Q 017997 152 ILSNPEF 158 (362)
Q Consensus 152 v~~~Pe~ 158 (362)
..+-|.+
T Consensus 296 ~t~vPsy 302 (374)
T PRK01581 296 HTIVPSF 302 (374)
T ss_pred EEecCCC
Confidence 4456665
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.031 Score=55.76 Aligned_cols=110 Identities=17% Similarity=0.204 Sum_probs=66.1
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHhhhcCCCEEE--ecCHHhhhc
Q 017997 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFF--STDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~~~G~~V~~~d~~~~-~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~~ 77 (362)
++|.|+|+|..|.+ +|..|.+. |++|+++|.++. ..+.+.+. .+.+ ..+. +.+.
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~--G~~V~~~D~~~~~~~~~l~~~-------------------gi~~~~~~~~-~~~~ 65 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNL--GYKVSGSDLKESAVTQRLLEL-------------------GAIIFIGHDA-ENIK 65 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhC--CCeEEEECCCCChHHHHHHHC-------------------CCEEeCCCCH-HHCC
Confidence 58999999999999 79999998 999999997643 22233321 1222 1222 3367
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH---------HH-HhhcCCCCEEEEeeCCccccHH-HHHHHHHhc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------VI-ADVSKSDKIVVEKSTVPVKTAE-AIEKILTHN 144 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~---------~i-~~~l~~~~iVv~~STv~~gt~~-~l~~~l~~~ 144 (362)
++|+||++-.-|.+ . ..++.+.+ ++ ...+++..+|.++.|..=.||. .+..+|+..
T Consensus 66 ~~d~vv~spgi~~~--------~---~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~ 132 (461)
T PRK00421 66 DADVVVYSSAIPDD--------N---PELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEA 132 (461)
T ss_pred CCCEEEECCCCCCC--------C---HHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence 89998887443322 1 22222211 12 2233344678777777655554 456777654
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.031 Score=50.77 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=35.4
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
+|+|.|+|+ |.+|..++..|+++ ||+|+++.|++++...+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAK--GFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC--CCEEEEEecCHHHHHHh
Confidence 478999995 99999999999998 99999999998876554
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0076 Score=53.61 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=33.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.+|+|||+|.+|+.+|..|++. |. +++++|.|.-....+++
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~--Gvg~i~lvD~D~ve~sNL~R 70 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARS--GVGNLKLVDFDVVEPSNLNR 70 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCEeccccccc
Confidence 3799999999999999999999 65 69999998443444443
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.026 Score=52.43 Aligned_cols=53 Identities=19% Similarity=0.349 Sum_probs=42.2
Q ss_pred ceEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|+|.|. +|.|+|..|.+. |.+|+++++.. .++.+.++++|
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~--gatVtv~~~~t---------------------------------~~L~~~~~~aD 204 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNA--NATVTICHSRT---------------------------------QNLPELVKQAD 204 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC--CCEEEEEeCCc---------------------------------hhHHHHhccCC
Confidence 4799999997 999999999988 78999998621 12233468899
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.|++.|
T Consensus 205 IvI~AtG~~ 213 (283)
T PRK14192 205 IIVGAVGKP 213 (283)
T ss_pred EEEEccCCC
Confidence 999998643
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.036 Score=45.83 Aligned_cols=69 Identities=25% Similarity=0.427 Sum_probs=47.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|.|+| ...+|.++|..|.+. |.+|+.++.+ |.++++.+++||
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~--gatV~~~~~~---------------------------------t~~l~~~v~~AD 73 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRD--GATVYSCDWK---------------------------------TIQLQSKVHDAD 73 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEeCCC---------------------------------CcCHHHHHhhCC
Confidence 3677777 456777777777776 6777777642 124566789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+|+.+++.+.. .+ .+.+++|++|++
T Consensus 74 IVvsAtg~~~~---------i~-----------~~~ikpGa~Vid 98 (140)
T cd05212 74 VVVVGSPKPEK---------VP-----------TEWIKPGATVIN 98 (140)
T ss_pred EEEEecCCCCc---------cC-----------HHHcCCCCEEEE
Confidence 99999886521 11 245789999885
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.021 Score=54.42 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=40.4
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec-CHHhhhc
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALK-CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~-~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~ 77 (362)
||||+|+|+ |++|.-+...|.++ .|..++..+... +.. |. ++...+ ..+.+.. +..+ ++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~a-----G~-~l~~~~----------~~l~~~~~~~~~-~~ 65 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESA-----GH-SVPFAG----------KNLRVREVDSFD-FS 65 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccC-----CC-eeccCC----------cceEEeeCChHH-hc
Confidence 468999996 99999999999976 122344444332 211 21 111111 1133322 2233 68
Q ss_pred CCcEEEEecc
Q 017997 78 EADIVFVSVN 87 (362)
Q Consensus 78 ~aDvVii~vp 87 (362)
++|++|+|+|
T Consensus 66 ~vD~vFla~p 75 (336)
T PRK05671 66 QVQLAFFAAG 75 (336)
T ss_pred CCCEEEEcCC
Confidence 9999999987
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0064 Score=59.52 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=31.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|+|+|||.|.+|+++|..|++. |++|+++|++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~--g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQA--GHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCCc
Confidence 7999999999999999999999 999999999753
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.015 Score=54.02 Aligned_cols=72 Identities=11% Similarity=0.103 Sum_probs=51.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe---cCHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS---TDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t---~d~~~a~~ 77 (362)
.++.|||+|-+|.+++..|++. |. +|++++|++++.+.+.+.... ...+... ++..+.+.
T Consensus 126 k~vlvlGaGGaarai~~aL~~~--G~~~i~I~nRt~~ka~~La~~~~~--------------~~~~~~~~~~~~~~~~~~ 189 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASL--GVTDITVINRNPDKLSRLVDLGVQ--------------VGVITRLEGDSGGLAIEK 189 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhhh--------------cCcceeccchhhhhhccc
Confidence 3689999999999999999998 65 799999999999888652100 0011111 22234467
Q ss_pred CCcEEEEeccCC
Q 017997 78 EADIVFVSVNTP 89 (362)
Q Consensus 78 ~aDvVii~vptp 89 (362)
++|+||-|+|..
T Consensus 190 ~~DiVInaTp~g 201 (282)
T TIGR01809 190 AAEVLVSTVPAD 201 (282)
T ss_pred CCCEEEECCCCC
Confidence 899999997653
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.034 Score=48.35 Aligned_cols=87 Identities=24% Similarity=0.299 Sum_probs=56.8
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe--cC----HHh
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS--TD----VEK 74 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t--~d----~~~ 74 (362)
.+|+|||- ..+|.|+|..|.++ |..|+.+|++.-.. ...+.. . +-..| .| ..+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~--~AtVti~~~~~~~~--~~~~~~-~---------------~hs~t~~~~~~~~l~~ 122 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLAND--GARVYSVDINGIQV--FTRGES-I---------------RHEKHHVTDEEAMTLD 122 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEEecCcccc--cccccc-c---------------ccccccccchhhHHHH
Confidence 47999995 67899999999998 89999999763221 111000 0 00111 12 556
Q ss_pred hhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEee
Q 017997 75 HVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~S 127 (362)
.+++||+||.+++.|--. +. .+.+++|++||+-+
T Consensus 123 ~~~~ADIVIsAvG~~~~~-------------i~------~d~ik~GavVIDVG 156 (197)
T cd01079 123 CLSQSDVVITGVPSPNYK-------------VP------TELLKDGAICINFA 156 (197)
T ss_pred HhhhCCEEEEccCCCCCc-------------cC------HHHcCCCcEEEEcC
Confidence 689999999999865310 11 23467999998744
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.01 Score=43.89 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=30.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
||.|||.|++|.-+|..|++. |.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~--g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL--GKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--TSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh--CcEEEEEeccch
Confidence 689999999999999999998 999999998753
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.026 Score=54.01 Aligned_cols=33 Identities=30% Similarity=0.543 Sum_probs=27.0
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEE-eCC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVV-DIS 35 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~-d~~ 35 (362)
|||+|+|+ |++|..++..|.++ +.++++.+ +.+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~-~~~~l~~v~~~~ 35 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH-PYFELAKVVASP 35 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCceEEEEEECh
Confidence 69999995 99999999988886 34688877 544
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.12 Score=51.23 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=29.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.|.|+|+|..|.++|..|.+. |++|+++|..+
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~--G~~v~~~D~~~ 39 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQ--GIPFAVMDSRE 39 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhC--CCeEEEEeCCC
Confidence 589999999999999999998 99999999754
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.069 Score=53.49 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=33.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINA 41 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~ 41 (362)
++|.|+|+|..|.++|..|.+. |++|+++|++.....+
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~--G~~V~~~D~~~~~~~~ 53 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSEL--GCDVVVADDNETARHK 53 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHC--CCEEEEECCChHHHHH
Confidence 5799999999999999999999 9999999987655433
|
|
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.91 Score=42.49 Aligned_cols=228 Identities=13% Similarity=0.196 Sum_probs=130.3
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH---HHH-HHHHcCCCCCCCCChHHHHhhhcCCCEE---EecCHH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV---SRI-NAWNSDQLPIYEPGLDGVVKQCRGKNLF---FSTDVE 73 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~---~~~-~~l~~~~~~~~e~~l~~~~~~~~~~~l~---~t~d~~ 73 (362)
|.++-++|+|.+..-+|.-+..++ ..++=.+++-. +++ ++++.+ ..++-.+-.+..+. ..|+.. +-.|++
T Consensus 4 m~~vLllGtGpvaIQlAv~l~~h~-d~~lg~~~r~s~rse~l~qala~~-~ql~l~~q~eahr~-leg~~~id~~~kd~a 80 (431)
T COG4408 4 MLPVLLLGTGPVAIQLAVDLSAHG-DARLGLYNRPSTRSERLKQALALT-PQLYLQGQGEAHRQ-LEGSVTIDCYIKDLA 80 (431)
T ss_pred ccceeEeecCcHHHHHHHHHHhcc-CceeeccCCCCchhHHHHHHHhcC-CeEEEEeccHHHHh-hcCceehhHHHhhHH
Confidence 457899999999999999998873 45666676533 222 333332 22333333333222 234432 345677
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHH-hhcCC-CCEEEEeeCCccccHHHHHHHHHhccCCCceE
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIA-DVSKS-DKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQ 151 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~-~~l~~-~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~ 151 (362)
++..+-+-+|+|||+. .-.+++++|- +.++. .++|.+++|+..+. .+...+.+. |.+..
T Consensus 81 ~~~~dwqtlilav~aD---------------aY~dvlqqi~~e~L~~vk~viLiSptfGsn~--lv~~~mnk~--~~dae 141 (431)
T COG4408 81 QAVGDWQTLILAVPAD---------------AYYDVLQQIPWEALPQVKSVILISPTFGSNL--LVQNLMNKA--GRDAE 141 (431)
T ss_pred HhhchhheEEEEeecH---------------HHHHHHhcCCHhHhccccEEEEecccccccH--HHHHHHhhh--CCCce
Confidence 7778899999999853 2356776663 22332 45566666664442 222223332 23334
Q ss_pred EeeCCcccc---------cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHH------
Q 017997 152 ILSNPEFLA---------EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSK------ 216 (362)
Q Consensus 152 v~~~Pe~~~---------~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~K------ 216 (362)
|++-....+ |-++.-.-.+ .+|.+|+... +....+.+.+++...+. ......++..||.-.
T Consensus 142 ViS~SsY~~dTk~id~~~p~~alTkavK-kriYlgs~~~--ns~~~e~l~~v~aq~~I-~v~~~esp~~AEtrnit~YVH 217 (431)
T COG4408 142 VISLSSYYADTKYIDAEQPNRALTKAVK-KRIYLGSQHG--NSGSAEMLTAVLAQHGI-DVEPCESPLAAETRNITLYVH 217 (431)
T ss_pred EEEeehhcccceeecccCcchHHHHHHh-HheeeccCCC--CChHHHHHHHHHHhcCC-ceEEcCChhhhhhcccceeec
Confidence 433221111 1111111111 2477886533 34567889999988753 233445777776431
Q ss_pred -------HH-----------------------HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 017997 217 -------LA-----------------------ANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTD 254 (362)
Q Consensus 217 -------l~-----------------------~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~ 254 (362)
+. .-+...-+...+.|++++..++|+..-.+++.++.|
T Consensus 218 pPlflndfsL~aif~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~dd 285 (431)
T COG4408 218 PPLFLNDFSLQAIFYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDD 285 (431)
T ss_pred CcchhhhhHHHHHhCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccC
Confidence 11 112233455788899999999999999999999875
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.034 Score=51.47 Aligned_cols=70 Identities=23% Similarity=0.370 Sum_probs=53.7
Q ss_pred ceEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.++.|||-+. +|.|+|..|.+. |..|++++.. |.|+.+.+++||
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 209 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNR--NATVSVCHVF---------------------------------TDDLKKYTLDAD 209 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHC--CCEEEEEecc---------------------------------CCCHHHHHhhCC
Confidence 4799999988 999999999988 8999998742 234555688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+||.+++-|.- +. ...++++++||+-
T Consensus 210 Ivv~AvG~p~~--------------i~------~~~vk~gavVIDv 235 (287)
T PRK14176 210 ILVVATGVKHL--------------IK------ADMVKEGAVIFDV 235 (287)
T ss_pred EEEEccCCccc--------------cC------HHHcCCCcEEEEe
Confidence 99999886631 11 1257889998863
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.014 Score=51.49 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=32.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~ 43 (362)
.||.|+|+|.+|+.+|..|+.. |. +++++|.|.-....++
T Consensus 22 ~~VlviG~GglGs~ia~~La~~--Gv~~i~lvD~d~ve~sNL~ 62 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGA--GVGTIVIVDDDHVDLSNLQ 62 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHc--CCCeEEEecCCEEcccchh
Confidence 3799999999999999999999 75 8999998844333343
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.027 Score=43.98 Aligned_cols=62 Identities=18% Similarity=0.350 Sum_probs=42.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|.|||.|.+|..=+..|.+. |.+|+++..+.+. .. +... +. ...+++.+.++++
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~--gA~v~vis~~~~~---~~-~~i~-----------------~~-~~~~~~~l~~~~l 63 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEA--GAKVTVISPEIEF---SE-GLIQ-----------------LI-RREFEEDLDGADL 63 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCC--TBEEEEEESSEHH---HH-TSCE-----------------EE-ESS-GGGCTTESE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCchhh---hh-hHHH-----------------HH-hhhHHHHHhhheE
Confidence 4799999999999999999998 8999999987511 11 1111 11 1223344888999
Q ss_pred EEEecc
Q 017997 82 VFVSVN 87 (362)
Q Consensus 82 Vii~vp 87 (362)
||+|++
T Consensus 64 V~~at~ 69 (103)
T PF13241_consen 64 VFAATD 69 (103)
T ss_dssp EEE-SS
T ss_pred EEecCC
Confidence 999965
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.091 Score=52.38 Aligned_cols=39 Identities=18% Similarity=0.104 Sum_probs=32.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
++|.|+|+|..|.+.|..|.+. |++|+++|..+.....+
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~--G~~v~~~D~~~~~~~~l 48 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAG--GAEVIAWDDNPASRAKA 48 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHC--CCEEEEECCChhhHHHH
Confidence 4799999999999999999888 99999999875544434
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.04 Score=52.40 Aligned_cols=69 Identities=23% Similarity=0.388 Sum_probs=51.3
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
++|.|+|+ |.||..++..|+.++ | .+++++++++++++.+.+... .+.+ .+..+++.++
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~-gv~~lilv~R~~~rl~~La~el~---------------~~~i---~~l~~~l~~a 216 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKT-GVAELLLVARQQERLQELQAELG---------------GGKI---LSLEEALPEA 216 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhC-CCCEEEEEcCCHHHHHHHHHHhc---------------cccH---HhHHHHHccC
Confidence 57999998 899999999998541 3 689999999988887754210 0111 2456678999
Q ss_pred cEEEEeccCC
Q 017997 80 DIVFVSVNTP 89 (362)
Q Consensus 80 DvVii~vptp 89 (362)
|+|+.+...|
T Consensus 217 DiVv~~ts~~ 226 (340)
T PRK14982 217 DIVVWVASMP 226 (340)
T ss_pred CEEEECCcCC
Confidence 9999997654
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.089 Score=52.39 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=29.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
||.|||+|..|.+.|..|++. |++|+++|+++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~--G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ--GWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC--CCEEEEECCCC
Confidence 799999999999999999998 99999999764
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.025 Score=52.38 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=31.6
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHH
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRI 39 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~ 39 (362)
+|.|+|+ |++|..++..|.+. |++|.+..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~--g~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA--SVPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC--CCcEEEEeCCCccc
Confidence 5889987 99999999999998 99999999998754
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.039 Score=51.92 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=24.2
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEE
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVV 32 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~ 32 (362)
++||+|+| .||+|.-+...|.++ |..++...
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~h-p~~~l~~~ 33 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGR-SDIELLSI 33 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcC-CCeEEEEE
Confidence 46999999 699999999999887 34444444
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.032 Score=52.23 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=39.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
-||+|+| .||.|.-+.+.|+.+ |..++....-+.. +. ..+.++.++++|
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-P~~el~~l~s~~~----------------------------~~-~~~~~~~~~~~D 51 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-DDIELLSIAPDRR----------------------------KD-AAERAKLLNAAD 51 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-CCeEEEEEecccc----------------------------cC-cCCHhHhhcCCC
Confidence 4899999 599999999999987 5556655532211 00 012344457899
Q ss_pred EEEEeccC
Q 017997 81 IVFVSVNT 88 (362)
Q Consensus 81 vVii~vpt 88 (362)
++|+|+|.
T Consensus 52 ~vFlalp~ 59 (310)
T TIGR01851 52 VAILCLPD 59 (310)
T ss_pred EEEECCCH
Confidence 99999874
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.022 Score=54.19 Aligned_cols=90 Identities=22% Similarity=0.329 Sum_probs=53.6
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh-hhcC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALK-CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK-HVSE 78 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~-~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~-a~~~ 78 (362)
|||+|||+ |++|.-+...|+++ .|..++..+..+.. .|. ++...+ ..+.+. +.++ ...+
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~s------aG~-~~~~~~----------~~~~v~-~~~~~~~~~ 66 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFPVGELYALASEES------AGE-TLRFGG----------KSVTVQ-DAAEFDWSQ 66 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCc------CCc-eEEECC----------cceEEE-eCchhhccC
Confidence 69999996 99999999999974 35567777744321 121 111111 124443 2222 2378
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-cCCCCEEEEeeC
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-SKSDKIVVEKST 128 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~-l~~~~iVv~~ST 128 (362)
+|++|+|+|.. +...+.+. ...+..||+.|.
T Consensus 67 ~Dvvf~a~p~~-------------------~s~~~~~~~~~~g~~VIDlS~ 98 (336)
T PRK08040 67 AQLAFFVAGRE-------------------ASAAYAEEATNAGCLVIDSSG 98 (336)
T ss_pred CCEEEECCCHH-------------------HHHHHHHHHHHCCCEEEECCh
Confidence 99999998732 23333333 246788887664
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.038 Score=49.52 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=49.8
Q ss_pred EEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 4 ICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 4 I~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~--~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+|+|+ |.+|.+++..|.+. +++|.++-|++ +..+.+++....+-+-+ +.-.+++.++++++|
T Consensus 1 I~V~GatG~~G~~v~~~L~~~--~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d------------~~~~~~l~~al~g~d 66 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA--GFSVRALVRDPSSDRAQQLQALGAEVVEAD------------YDDPESLVAALKGVD 66 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TGCEEEEESSSHHHHHHHHHHTTTEEEES-------------TT-HHHHHHHHTTCS
T ss_pred CEEECCccHHHHHHHHHHHhC--CCCcEEEEeccchhhhhhhhcccceEeecc------------cCCHHHHHHHHcCCc
Confidence 789996 99999999999997 99999999985 34556654321111100 101123456789999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
.||++++..
T Consensus 67 ~v~~~~~~~ 75 (233)
T PF05368_consen 67 AVFSVTPPS 75 (233)
T ss_dssp EEEEESSCS
T ss_pred eEEeecCcc
Confidence 999998743
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.034 Score=51.32 Aligned_cols=70 Identities=31% Similarity=0.547 Sum_probs=52.7
Q ss_pred ceEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|||-+ .+|.|+|..|.++ |..|+.+... |.|+.+.+++||
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~--~AtVti~hs~---------------------------------T~~l~~~~~~AD 202 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNA--NATVDICHIF---------------------------------TKDLKAHTKKAD 202 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CcCHHHHHhhCC
Confidence 479999987 9999999999988 8899876431 234555688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+||.+++.|.-. . ...+++|++|++.
T Consensus 203 IvV~AvGkp~~i--------------~------~~~vk~gavvIDv 228 (281)
T PRK14183 203 IVIVGVGKPNLI--------------T------EDMVKEGAIVIDI 228 (281)
T ss_pred EEEEecCccccc--------------C------HHHcCCCcEEEEe
Confidence 999999865311 1 2456889998863
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.012 Score=57.08 Aligned_cols=41 Identities=22% Similarity=0.461 Sum_probs=34.7
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
|||.|.| .|++|..++..|.+++ |++|+++|++.++...+.
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~-g~~V~~l~r~~~~~~~l~ 56 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTET-PHKVLALDVYNDKIKHLL 56 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcC-CCEEEEEecCchhhhhhh
Confidence 7999999 5999999999999872 499999999877666543
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.21 Score=49.47 Aligned_cols=114 Identities=13% Similarity=0.168 Sum_probs=65.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHhhhcCCCEEEec-CHHhhhc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR--INAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~--~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~ 77 (362)
+++|.|||+|..|.+.++.|.+.+.|++|+++|.++.. .+.+.++ . .+.... +.+ .+.
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g-~-----------------~~~~g~~~~~-~~~ 67 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPED-V-----------------ELHSGGWNLE-WLL 67 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcC-C-----------------EEEeCCCChH-Hhc
Confidence 36799999999999999999887523899999975421 1223221 0 011111 333 367
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH---------HHHhhcCCCCEEEEeeCCccccHHH-HHHHHHhc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------VIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHN 144 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~---------~i~~~l~~~~iVv~~STv~~gt~~~-l~~~l~~~ 144 (362)
++|+||.+..-|.+ . ..+..+.+ ++...+.+..+|-++.|..=.||.. +..+|...
T Consensus 68 ~~d~vV~SpgI~~~--------~---p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~ 133 (438)
T PRK04663 68 EADLVVTNPGIALA--------T---PEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAA 133 (438)
T ss_pred cCCEEEECCCCCCC--------C---HHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHC
Confidence 89988776443321 1 22332221 2222222456787777776666654 56677654
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.058 Score=51.16 Aligned_cols=34 Identities=32% Similarity=0.475 Sum_probs=25.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHc------CCCCeEEEE-eCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALK------CPSIEVAVV-DIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~------~~G~~V~~~-d~~ 35 (362)
|||+|+|+|.||..++..|.++ +.+.+|+++ |++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~ 41 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSK 41 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECC
Confidence 6999999999999999998873 124565543 654
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.052 Score=50.23 Aligned_cols=70 Identities=21% Similarity=0.400 Sum_probs=53.0
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.++.. |.++.+.+++||
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~--~atVt~chs~---------------------------------t~~l~~~~~~AD 203 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNE--NATVTYCHSK---------------------------------TKNLAELTKQAD 203 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEEeCC---------------------------------chhHHHHHHhCC
Confidence 4799999 578999999999988 8999988632 234556689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+||.+++.|.-. . ..+++++++||+-
T Consensus 204 IvI~AvG~p~~i--------------~------~~~ik~gavVIDv 229 (284)
T PRK14190 204 ILIVAVGKPKLI--------------T------ADMVKEGAVVIDV 229 (284)
T ss_pred EEEEecCCCCcC--------------C------HHHcCCCCEEEEe
Confidence 999999866311 1 2346899999863
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.03 Score=53.52 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSI 27 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~ 27 (362)
+||+|+| .|++|.-+...|++. +|
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~--~h 32 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR--DF 32 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC--CC
Confidence 6999999 599999999999986 55
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.12 Score=52.23 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=29.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.+|.|+|+|..|.++|..|.+. |++|+++|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~--G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARH--GARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHC--CCEEEEEcCCC
Confidence 4799999999999999999998 99999999754
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.0099 Score=57.55 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=32.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|++|.|||.|..|+.+|..|++. |++|+++|+.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~--G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRH--GYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Confidence 78999999999999999999999 999999998754
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.14 Score=50.77 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=30.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
++|.|+|.|..|.+.|..|++. |++|+++|.++.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~--g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKN--GAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCC
Confidence 5899999999999999999999 999999997653
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.02 Score=54.74 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=35.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSD 45 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~ 45 (362)
.||.|||+|.+|+++|..|+.. |. +++++|.|.-....|+..
T Consensus 25 ~~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D~Ve~sNL~RQ 67 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRA--GVGKVTIVDRDYVEWSNLQRQ 67 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCccCHHHcCcc
Confidence 4799999999999999999999 77 899999986666556543
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.2 Score=49.67 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=30.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|.|+|+|.+|.++|..|++. |++|+++|++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~--G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKL--GANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEEcCCC
Confidence 3789999999999999999999 99999999864
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.066 Score=42.75 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=60.0
Q ss_pred ceEEEEc----CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIG----AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIG----lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
++|+||| -+.+|.-+...|.++ |++|+.++...+.+ .......++++.-.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~--G~~v~~Vnp~~~~i------------------------~G~~~y~sl~e~p~ 54 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA--GYEVYPVNPKGGEI------------------------LGIKCYPSLAEIPE 54 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT--T-EEEEESTTCSEE------------------------TTEE-BSSGGGCSS
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC--CCEEEEECCCceEE------------------------CcEEeeccccCCCC
Confidence 4799999 789999999999998 99999997653211 23566677776337
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
..|++++++|. ..+.++++++... ..+.+++..+ ...+++.+..++.
T Consensus 55 ~iDlavv~~~~---------------~~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~ 101 (116)
T PF13380_consen 55 PIDLAVVCVPP---------------DKVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREA 101 (116)
T ss_dssp T-SEEEE-S-H---------------HHHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHT
T ss_pred CCCEEEEEcCH---------------HHHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHc
Confidence 99999999873 2356667776654 4455665422 2335565655554
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.022 Score=43.85 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=43.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC--
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE-- 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~-V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~-- 78 (362)
.+|+|+|+|..|..++..+.+.. |+. +.++|.+++++-.-- ..+....+.+++.+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~-g~~i~~~~dv~~~~~G~~i--------------------~gipV~~~~~~l~~~~~ 62 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMR-GFGIVAVFDVDPEKIGKEI--------------------GGIPVYGSMDELEEFIE 62 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHH-CECEEEEEEECTTTTTSEE--------------------TTEEEESSHHHHHHHCT
T ss_pred CeEEEECCCCcHHHHHHhHHHHc-CCCCEEEEEcCCCccCcEE--------------------CCEEeeccHHHhhhhhC
Confidence 37999999999998886554432 665 667799987543111 234555555554444
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
.|+.++|||.
T Consensus 63 i~iaii~VP~ 72 (96)
T PF02629_consen 63 IDIAIITVPA 72 (96)
T ss_dssp TSEEEEES-H
T ss_pred CCEEEEEcCH
Confidence 9999999984
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.055 Score=50.84 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=31.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~ 38 (362)
++|.|.| +|++|..++..|+++ ||+|++++++++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~--g~~V~~~~r~~~~ 40 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQR--GYTVKATVRDPND 40 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHC--CCEEEEEEcCCCc
Confidence 5899999 699999999999999 9999999987654
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.044 Score=52.36 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=32.1
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~ 38 (362)
+|+|.|.|. |++|..++..|+++ |++|++++++.+.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~--G~~V~~~~r~~~~ 46 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLER--GYTVKGTVRNPDD 46 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeCCchh
Confidence 368999997 99999999999999 9999999998654
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.036 Score=52.85 Aligned_cols=68 Identities=18% Similarity=0.384 Sum_probs=41.9
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCe---EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-cCHHhhh
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIE---VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHV 76 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~---V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~ 76 (362)
+||+|||+ |++|.-+...|.++ |.++ +..+..... .|.. +...+ ..+.+. .+..+ +
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h-~~f~v~~l~~~aS~~s------aGk~-~~~~~----------~~l~v~~~~~~~-~ 66 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKE-TKFNIAEVTLLSSKRS------AGKT-VQFKG----------REIIIQEAKINS-F 66 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHC-CCCCcccEEEEECccc------CCCC-eeeCC----------cceEEEeCCHHH-h
Confidence 69999996 99999999999964 3677 555544311 1211 11001 123322 24443 6
Q ss_pred cCCcEEEEeccC
Q 017997 77 SEADIVFVSVNT 88 (362)
Q Consensus 77 ~~aDvVii~vpt 88 (362)
+++|++|.|+|.
T Consensus 67 ~~~Divf~a~~~ 78 (347)
T PRK06728 67 EGVDIAFFSAGG 78 (347)
T ss_pred cCCCEEEECCCh
Confidence 899999999874
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.17 Score=49.90 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=29.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
||.|||+|..|.++|..|.+. |++|+++|..+
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~--G~~V~~sD~~~ 32 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK--GAEVTVTDLKP 32 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC--CCEEEEEeCCC
Confidence 589999999999999999999 99999999754
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.065 Score=51.53 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=24.8
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCe---EEEEeC
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIE---VAVVDI 34 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~---V~~~d~ 34 (362)
||+|+|+|+ |++|.-+...++++ +.++ +..+..
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~-~~f~~~~l~~~ss 37 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEE-NDFDLIEPVFFST 37 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhC-CCCCcCcEEEecc
Confidence 789999996 99999999855544 2666 666544
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.18 Score=49.70 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=35.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-e----------CCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-D----------ISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d----------~~~~~~~~l~~ 44 (362)
++|+|.|.|.+|..+|..|.+. |.+|+++ | +|.+.+.+..+
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~--GakVVavsDs~G~iyn~~GLD~~~L~~~k~ 284 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQL--GAKVVTCSDSSGYVYDEEGIDLEKLKEIKE 284 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEcCCceEECCCCCCHHHHHHHHH
Confidence 5899999999999999999998 9999988 8 77777666554
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.01 Score=55.83 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=47.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+|.|.| .|++|..++..|++. |++|++++++++....+.+...... .+.+.-.++..++++.+|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~------------~~D~~~~~~l~~~~~~~d 66 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ--GEEVRVLVRPTSDRRNLEGLDVEIV------------EGDLRDPASLRKAVAGCR 66 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC--CCEEEEEEecCccccccccCCceEE------------EeeCCCHHHHHHHHhCCC
Confidence 6899998 599999999999999 9999999998665432221100000 011111123445677899
Q ss_pred EEEEecc
Q 017997 81 IVFVSVN 87 (362)
Q Consensus 81 vVii~vp 87 (362)
+||-+..
T Consensus 67 ~vi~~a~ 73 (328)
T TIGR03466 67 ALFHVAA 73 (328)
T ss_pred EEEEece
Confidence 9988764
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.013 Score=56.56 Aligned_cols=34 Identities=35% Similarity=0.409 Sum_probs=32.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|+|.|||.|..|+.+|..|+++ |++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~--g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ--GHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCc
Confidence 7999999999999999999999 999999998764
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.13 Score=51.18 Aligned_cols=109 Identities=18% Similarity=0.228 Sum_probs=64.7
Q ss_pred eEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe--cCHHhhhcC
Q 017997 3 KICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS--TDVEKHVSE 78 (362)
Q Consensus 3 kI~VIGlG~~G~~-lA~~la~~~~G~~V~~~d~~~~-~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t--~d~~~a~~~ 78 (362)
+|-|||.|..|.+ +|..|.+. |++|+++|.+.. ..+.|.+. .+.+. .+. +.+.+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~--G~~v~~~D~~~~~~~~~l~~~-------------------gi~~~~g~~~-~~~~~ 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR--GYQVSGSDIAENATTKRLEAL-------------------GIPIYIGHSA-ENLDD 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC--CCeEEEECCCcchHHHHHHHC-------------------cCEEeCCCCH-HHCCC
Confidence 4789999999998 99999998 999999997653 22233321 12221 122 23677
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHH----------HHHHhhcCCCCEEEEeeCCccccHH-HHHHHHHhc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAA----------RVIADVSKSDKIVVEKSTVPVKTAE-AIEKILTHN 144 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~----------~~i~~~l~~~~iVv~~STv~~gt~~-~l~~~l~~~ 144 (362)
+|+||++-.-|.+ .| .+..+. +-+...+++..+|.++.|..=.||. .+..+|+..
T Consensus 59 ~d~vV~spgi~~~--------~p---~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~ 124 (448)
T TIGR01082 59 ADVVVVSAAIKDD--------NP---EIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEA 124 (448)
T ss_pred CCEEEECCCCCCC--------CH---HHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHc
Confidence 9998887433321 12 222221 1122333345678777776555554 456677654
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.03 Score=58.25 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=31.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.||+|||.|..|+..|..|++. ||+|++|++.+.
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~--G~~Vtv~e~~~~ 344 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARA--GVQVDVFDRHPE 344 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCcEEEEeCCCC
Confidence 4899999999999999999998 999999998764
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.098 Score=47.50 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=43.4
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V-~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
||||+|.|+ |.||..+...+... +++++ -++|+.+.... .+ +..++.. ...-....++|+.....+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-~~~~L~aa~~~~~~~~~--g~--------d~ge~~g-~~~~gv~v~~~~~~~~~~ 69 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-PDLELVAAFDRPGSLSL--GS--------DAGELAG-LGLLGVPVTDDLLLVKAD 69 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-CCceEEEEEecCCcccc--cc--------chhhhcc-ccccCceeecchhhcccC
Confidence 689999998 99999999888876 35664 45676543210 00 0000000 000123455666666789
Q ss_pred CcEEEEec
Q 017997 79 ADIVFVSV 86 (362)
Q Consensus 79 aDvVii~v 86 (362)
+|++|=-+
T Consensus 70 ~DV~IDFT 77 (266)
T COG0289 70 ADVLIDFT 77 (266)
T ss_pred CCEEEECC
Confidence 99987653
|
|
| >PTZ00245 ubiquitin activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.13 Score=46.57 Aligned_cols=115 Identities=15% Similarity=0.044 Sum_probs=71.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHH---Hhh--hcCCCEEEecC--HH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGV---VKQ--CRGKNLFFSTD--VE 73 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~---~~~--~~~~~l~~t~d--~~ 73 (362)
.+|.|+|+|.+|.+++.+|+.. |. +++++|-+.-....++++...-.+.|.... ... ..+..++...- .-
T Consensus 27 SrVLVVG~GGLGsEVAKnLaLA--GVGsItIvDdD~Ve~SNL~RQfl~~~dvGk~KAeaAa~~L~eLNP~V~V~~i~~rl 104 (287)
T PTZ00245 27 TSVALHGVAGAAAEAAKNLVLA--GVRAVAVADEGLVTDADVCTNYLMQGEAGGTRGARALGALQRLNPHVSVYDAVTKL 104 (287)
T ss_pred CeEEEECCCchHHHHHHHHHHc--CCCeEEEecCCccchhhhccccccccccCCcHHHHHHHHHHHHCCCcEEEEccccc
Confidence 3799999999999999999999 54 799999887666666654322222221111 111 11222332221 11
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~ 135 (362)
+.....++++++..+ ++++++.+...++.-++|+..+|..+-|..
T Consensus 105 d~~n~fqvvV~~~~~-----------------le~av~~~~~~~~~~d~~~l~~~~g~~~~~ 149 (287)
T PTZ00245 105 DGSSGTRVTMAAVIT-----------------EEDAVPHVQAALPCADIVALHVTCGPTVLA 149 (287)
T ss_pred CCcCCceEEEEEccc-----------------HHHHHHHhccCCCcccEEEEEEecchhhhh
Confidence 124567788887542 356677777777777788888888765543
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.063 Score=49.72 Aligned_cols=69 Identities=20% Similarity=0.409 Sum_probs=52.6
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.|+++.+++||
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~--~aTVtichs~---------------------------------T~~l~~~~~~AD 200 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLRE--DATVTLAHSK---------------------------------TQDLPAVTRRAD 200 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899977531 235566688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++.|-- +. ..++++|++||+
T Consensus 201 IvIsAvGkp~~--------------i~------~~~vk~GavVID 225 (287)
T PRK14173 201 VLVVAVGRPHL--------------IT------PEMVRPGAVVVD 225 (287)
T ss_pred EEEEecCCcCc--------------cC------HHHcCCCCEEEE
Confidence 99999986631 11 245689999986
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.11 Score=46.69 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=47.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC---eEEEEeCC----HHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI---EVAVVDIS----VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~---~V~~~d~~----~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (362)
++|.|+|+|.+|..+|..|++. |. +++++|++ .++.+.+... ..++.+...... ...++.+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~--G~~~~~i~ivdr~gl~~~~r~~~L~~~--------~~~la~~~~~~~--~~~~l~~ 93 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAA--GAKPENIVVVDSKGVIYEGREDDLNPD--------KNEIAKETNPEK--TGGTLKE 93 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHc--CcCcceEEEEeCCCccccccchhhhHH--------HHHHHHHhccCc--ccCCHHH
Confidence 4899999999999999999988 75 59999998 3433211110 001111100001 1125656
Q ss_pred hhcCCcEEEEecc
Q 017997 75 HVSEADIVFVSVN 87 (362)
Q Consensus 75 a~~~aDvVii~vp 87 (362)
+++++|++|=++|
T Consensus 94 ~l~~~dvlIgaT~ 106 (226)
T cd05311 94 ALKGADVFIGVSR 106 (226)
T ss_pred HHhcCCEEEeCCC
Confidence 7889999999976
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.086 Score=47.51 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=34.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSD 45 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~ 45 (362)
.+|.|+|+|.+|+.++..|++. |. +++++|.|.-....+++.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~--GVg~i~LvD~D~V~~sNlnRq 54 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARS--GVGKLTLIDFDVVCVSNLNRQ 54 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCEECchhhcch
Confidence 4799999999999999999999 54 899999876555555543
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.036 Score=51.67 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=32.6
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRIN 40 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~ 40 (362)
|+|-|.| .|++|..++..|.+. ||+|.++|+......
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~--g~~V~~~~r~~~~~~ 38 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAA--GHDVRGLDRLRDGLD 38 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhC--CCeEEEEeCCCcccc
Confidence 5699999 599999999999999 999999999765544
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.073 Score=49.20 Aligned_cols=69 Identities=23% Similarity=0.358 Sum_probs=52.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|||- ..+|.|+|..|.++ |..|+.+... |.|+.+.+++||
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~--~atVtichs~---------------------------------T~~l~~~~~~AD 202 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNE--NATVTIAHSR---------------------------------TKDLPQVAKEAD 202 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 47999995 67999999999988 8999987531 234566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++.|-- +. ..++++|++||+
T Consensus 203 IvI~AvG~~~~--------------i~------~~~vk~GavVID 227 (284)
T PRK14170 203 ILVVATGLAKF--------------VK------KDYIKPGAIVID 227 (284)
T ss_pred EEEEecCCcCc--------------cC------HHHcCCCCEEEE
Confidence 99999986531 11 245689999886
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.03 Score=53.51 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=40.4
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEE---EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec-CHHhhhc
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVA---VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKHVS 77 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~---~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~ 77 (362)
||+|+| .|++|.-+...|+++ +|++. .+.+++..-+.+. ..+ ..+.+.+ +.. .++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~--~hp~~~l~~~as~~~~g~~~~-------~~~----------~~~~~~~~~~~-~~~ 60 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER--NFPIDKLVLLASDRSAGRKVT-------FKG----------KELEVNEAKIE-SFE 60 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC--CCChhhEEEEeccccCCCeee-------eCC----------eeEEEEeCChH-Hhc
Confidence 689999 799999999999987 67643 4434322111111 001 1122222 233 368
Q ss_pred CCcEEEEeccC
Q 017997 78 EADIVFVSVNT 88 (362)
Q Consensus 78 ~aDvVii~vpt 88 (362)
++|++|+|+|.
T Consensus 61 ~~D~v~~a~g~ 71 (339)
T TIGR01296 61 GIDIALFSAGG 71 (339)
T ss_pred CCCEEEECCCH
Confidence 99999999773
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.02 Score=51.45 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=33.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.+|.|+|+|.+|+.+|..|+.. |. +++++|.|.-....+++
T Consensus 22 ~~VlivG~GglGs~va~~La~~--Gvg~i~lvD~D~ve~sNL~R 63 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAA--GVGKLGLVDDDVVELSNLQR 63 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCEEcCccccc
Confidence 4899999999999999999999 55 89999877544444544
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.079 Score=48.98 Aligned_cols=69 Identities=23% Similarity=0.438 Sum_probs=52.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.|+.+.+++||
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~--~atVtichs~---------------------------------T~~l~~~~~~AD 201 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNH--DATVTIAHSK---------------------------------TRNLKQLTKEAD 201 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899977531 234566688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++-|-- +. ..++++|++||+
T Consensus 202 IvI~AvG~p~~--------------i~------~~~vk~GavVID 226 (282)
T PRK14169 202 ILVVAVGVPHF--------------IG------ADAVKPGAVVID 226 (282)
T ss_pred EEEEccCCcCc--------------cC------HHHcCCCcEEEE
Confidence 99999986631 11 235689999886
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.078 Score=49.39 Aligned_cols=69 Identities=23% Similarity=0.370 Sum_probs=52.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.++.+.+++||
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 203 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAA--NATVTIAHSR---------------------------------TQDLASITREAD 203 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899887431 235566688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++-|.- +. ..++++|++||+
T Consensus 204 IvIsAvGkp~~--------------i~------~~~ik~gavVID 228 (297)
T PRK14186 204 ILVAAAGRPNL--------------IG------AEMVKPGAVVVD 228 (297)
T ss_pred EEEEccCCcCc--------------cC------HHHcCCCCEEEE
Confidence 99999986531 11 245689999886
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.04 Score=47.29 Aligned_cols=68 Identities=24% Similarity=0.507 Sum_probs=44.2
Q ss_pred ceEEEEcCChhHHHHHHH-HHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--
Q 017997 2 VKICCIGAGYVGGPTMAV-IALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~-la~~~~G~~-V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (362)
.++.|||+|.+|.+++.. +.++. |++ |-++|++++++-.-..+ .++++ -++++.-++
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~-~~~iv~~FDv~~~~VG~~~~~-v~V~~-----------------~d~le~~v~~~ 145 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKN-GMKIVAAFDVDPDKVGTKIGD-VPVYD-----------------LDDLEKFVKKN 145 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhc-CceEEEEecCCHHHhCcccCC-eeeec-----------------hHHHHHHHHhc
Confidence 489999999999998854 44332 665 55689999976432222 33322 123333333
Q ss_pred CCcEEEEeccC
Q 017997 78 EADIVFVSVNT 88 (362)
Q Consensus 78 ~aDvVii~vpt 88 (362)
+.|+.++|||.
T Consensus 146 dv~iaiLtVPa 156 (211)
T COG2344 146 DVEIAILTVPA 156 (211)
T ss_pred CccEEEEEccH
Confidence 78999999983
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.086 Score=53.51 Aligned_cols=39 Identities=23% Similarity=0.165 Sum_probs=34.5
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
.|.|.|. |.+|..++..|++. |++|++++|+.++.+.+.
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~--G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKL--GFRVRAGVRSAQRAESLV 121 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHH
Confidence 5788885 99999999999999 999999999998887654
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.22 Score=44.88 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=35.6
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
|+|.|.|. |.+|..+|..|++. |++|+++++++++++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ--GHKVIATGRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 78999984 99999999999999 999999999988776654
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.44 Score=43.74 Aligned_cols=101 Identities=12% Similarity=0.142 Sum_probs=67.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh-hcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH-VSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~aD 80 (362)
.||-|||.|--| .++-+.+. ..+|+.+|+|++.++..++-. |.+... ....+++......+. -+.-|
T Consensus 74 k~VLIiGGGDGg--~~REvLkh--~~~v~mVeID~~Vv~~~k~~l-----P~~~~~---~~DpRv~l~~~~~~~~~~~fD 141 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY--DTHVDFVQADEKILDSFISFF-----PHFHEV---KNNKNFTHAKQLLDLDIKKYD 141 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc--CCeeEEEECCHHHHHHHHHHC-----HHHHHh---hcCCCEEEeehhhhccCCcCC
Confidence 589999999988 57888877 359999999999998777521 111111 123455544433332 25789
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPV 131 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~ 131 (362)
+||+-.. +. .+..+.+.+.|+++-+++..|+.|-
T Consensus 142 VIIvDs~-~~----------------~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 142 LIICLQE-PD----------------IHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred EEEEcCC-CC----------------hHHHHHHHHhcCCCcEEEECCCCcc
Confidence 9998731 11 2345677888999999988777543
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.092 Score=48.56 Aligned_cols=71 Identities=17% Similarity=0.305 Sum_probs=54.0
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.++.. |.|+.+..++||
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~--~atVt~chs~---------------------------------T~~l~~~~~~AD 204 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEM--NATVTLCHSK---------------------------------TQNLPSIVRQAD 204 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8999988632 234556688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEee
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~S 127 (362)
+||.+++.|-- +. ...+++|++||+-.
T Consensus 205 IvIsAvGk~~~--------------i~------~~~ik~gavVIDvG 231 (284)
T PRK14177 205 IIVGAVGKPEF--------------IK------ADWISEGAVLLDAG 231 (284)
T ss_pred EEEEeCCCcCc--------------cC------HHHcCCCCEEEEec
Confidence 99999986531 11 24578999998744
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.33 Score=48.03 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=29.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
+|.|+|+|..|.+.+..|++. |++|+++|.++
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~--G~~v~~~D~~~ 39 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLAR--GVTPRVIDTRI 39 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHC--CCeEEEEcCCC
Confidence 699999999999999988888 99999999753
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.094 Score=54.68 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=31.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|||.|.| +|++|..++..|.+. ||+|+++|+++.
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~--G~~Vi~ldr~~~ 35 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAA--GHTVSGIAQHPH 35 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEeCChh
Confidence 7999999 699999999999998 999999998754
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.091 Score=48.95 Aligned_cols=70 Identities=27% Similarity=0.327 Sum_probs=53.1
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|||- ..+|.|+|..|.++ |..|+.+... |.++++.+++||
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~--~ATVtvchs~---------------------------------T~nl~~~~~~AD 212 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKA--DATVTVVHSR---------------------------------TPDPESIVREAD 212 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 47999994 67999999999988 8999988542 234566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+||.+++.|.- +. .+.+++|++||+.
T Consensus 213 Ivv~AvGk~~~--------------i~------~~~vk~gavVIDv 238 (299)
T PLN02516 213 IVIAAAGQAMM--------------IK------GDWIKPGAAVIDV 238 (299)
T ss_pred EEEEcCCCcCc--------------cC------HHHcCCCCEEEEe
Confidence 99999986531 11 2456899998863
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.057 Score=48.66 Aligned_cols=42 Identities=19% Similarity=0.447 Sum_probs=35.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSD 45 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~ 45 (362)
.+|.|+|+|.+|+.+|..|+.. |. +++++|.|.-....+++.
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~--Gvg~i~lvD~D~ve~sNL~Rq 70 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAA--GVGRILLIDEQTPELSNLNRQ 70 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCccChhhhccc
Confidence 3799999999999999999999 54 799999887666667654
|
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.41 Score=45.20 Aligned_cols=88 Identities=19% Similarity=0.292 Sum_probs=57.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHc--CCCCCC--CCC-hHHHHhhhcCCCEEEecCHHhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNS--DQLPIY--EPG-LDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~~~l~~--~~~~~~--e~~-l~~~~~~~~~~~l~~t~d~~~a 75 (362)
-||++||+|.||.-+....++- ||.+|.++ |++.+.....-+ +..... |.. ....-..+..+++..|+|.+..
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m-~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i 96 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASM-PGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELI 96 (438)
T ss_pred eEEEEecccccchHHHHHHhhc-CCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhh
Confidence 3899999999999999988865 69998877 777665543322 222211 111 1122222456888899988764
Q ss_pred h--cCCcEEEEeccCCC
Q 017997 76 V--SEADIVFVSVNTPT 90 (362)
Q Consensus 76 ~--~~aDvVii~vptp~ 90 (362)
+ ...|+||-++.-|.
T Consensus 97 ~~~~~IdvIIdATG~p~ 113 (438)
T COG4091 97 IANDLIDVIIDATGVPE 113 (438)
T ss_pred hcCCcceEEEEcCCCcc
Confidence 3 35678888877653
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.4 Score=38.49 Aligned_cols=113 Identities=17% Similarity=0.179 Sum_probs=62.1
Q ss_pred eEEEEcCChhHHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhh---h-
Q 017997 3 KICCIGAGYVGGPTMAVIAL-KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKH---V- 76 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~-~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a---~- 76 (362)
+|.-+|+|. |. ++..+++ .+++.+|+++|++++.++.+++..... ++ ..++.+ ..|..+. .
T Consensus 43 ~vlDlG~Gt-G~-~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~---g~--------~~~v~~~~~d~~~~l~~~~ 109 (198)
T PRK00377 43 MILDIGCGT-GS-VTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF---GV--------LNNIVLIKGEAPEILFTIN 109 (198)
T ss_pred EEEEeCCcC-CH-HHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh---CC--------CCCeEEEEechhhhHhhcC
Confidence 577889877 42 2222322 122568999999999888665421000 00 012222 2233221 2
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
...|.||+..... .+..+++.+...++++..++. ++....+.+++.+.+++.
T Consensus 110 ~~~D~V~~~~~~~---------------~~~~~l~~~~~~LkpgG~lv~-~~~~~~~~~~~~~~l~~~ 161 (198)
T PRK00377 110 EKFDRIFIGGGSE---------------KLKEIISASWEIIKKGGRIVI-DAILLETVNNALSALENI 161 (198)
T ss_pred CCCCEEEECCCcc---------------cHHHHHHHHHHHcCCCcEEEE-EeecHHHHHHHHHHHHHc
Confidence 4689999864311 135677778888888776654 333445555666666553
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.11 Score=48.16 Aligned_cols=69 Identities=26% Similarity=0.433 Sum_probs=52.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.|+.+.+++||
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~--~ATVt~chs~---------------------------------T~dl~~~~k~AD 203 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNA--KATVTTCHRF---------------------------------TTDLKSHTTKAD 203 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEEcCC---------------------------------CCCHHHHhhhcC
Confidence 4799999 578999999999988 8999988632 234555588999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++.|-- +. ...++++++||+
T Consensus 204 IvIsAvGkp~~--------------i~------~~~vk~gavVID 228 (282)
T PRK14180 204 ILIVAVGKPNF--------------IT------ADMVKEGAVVID 228 (282)
T ss_pred EEEEccCCcCc--------------CC------HHHcCCCcEEEE
Confidence 99999986631 11 145688999986
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.1 Score=48.26 Aligned_cols=69 Identities=25% Similarity=0.375 Sum_probs=52.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.|+++..++||
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~--~atVt~chs~---------------------------------T~nl~~~~~~AD 202 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNA--GATVSVCHIK---------------------------------TKDLSLYTRQAD 202 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 467999999999988 8999987642 234566688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++-|--. . ...+++|++||+
T Consensus 203 IvIsAvGkp~~i--------------~------~~~vk~GavVID 227 (282)
T PRK14166 203 LIIVAAGCVNLL--------------R------SDMVKEGVIVVD 227 (282)
T ss_pred EEEEcCCCcCcc--------------C------HHHcCCCCEEEE
Confidence 999999866311 1 234689999986
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.26 Score=46.43 Aligned_cols=72 Identities=22% Similarity=0.397 Sum_probs=52.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCC--CCeEEEE-eCCHHHHHHHHcCC-CCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCP--SIEVAVV-DISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~--G~~V~~~-d~~~~~~~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
.++||+|+|.|+.-.+..|.-. | +|.|+++ |++.++..++.+.. .| +.++..++++.++
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~s~~~Ivava~~s~~~A~~fAq~~~~~----------------~~k~y~syEeLak 69 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PESNHQIVAVADPSLERAKEFAQRHNIP----------------NPKAYGSYEELAK 69 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-cccCcEEEEEecccHHHHHHHHHhcCCC----------------CCccccCHHHHhc
Confidence 3799999999999888887643 3 6876655 88888887766532 11 2455667777665
Q ss_pred --CCcEEEEeccCCC
Q 017997 78 --EADIVFVSVNTPT 90 (362)
Q Consensus 78 --~aDvVii~vptp~ 90 (362)
.+|+|.|..|+|.
T Consensus 70 d~~vDvVyi~~~~~q 84 (351)
T KOG2741|consen 70 DPEVDVVYISTPNPQ 84 (351)
T ss_pred CCCcCEEEeCCCCcc
Confidence 4599999988775
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.021 Score=54.04 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=29.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.+|.|||+|..|+.+|..|+++ |++|+++|+++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~--G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA--GIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhc--ccccccchhccc
Confidence 3799999999999999999999 999999998653
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.022 Score=55.34 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=31.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|+|.|||.|..|+++|..|++. |++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~--G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY--GHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC--CCceEEEeCCCC
Confidence 6899999999999999999999 999999998753
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.077 Score=48.98 Aligned_cols=53 Identities=17% Similarity=0.331 Sum_probs=43.4
Q ss_pred ceEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|+|-+ .+|.|+|..|... |..|+.+..+. .++.+.+++||
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~--~atVtv~hs~t---------------------------------~~L~~~~~~AD 197 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNA--DATVTICHSKT---------------------------------ENLKAELRQAD 197 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhC--CCeeEEEecCh---------------------------------hHHHHHHhhCC
Confidence 479999998 9999999999988 89999987642 23455688999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.+++-|
T Consensus 198 IvI~Avgk~ 206 (279)
T PRK14178 198 ILVSAAGKA 206 (279)
T ss_pred EEEECCCcc
Confidence 999999754
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.25 Score=52.92 Aligned_cols=111 Identities=17% Similarity=0.238 Sum_probs=64.5
Q ss_pred eEEEEcCChhHHHH-HHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 3 KICCIGAGYVGGPT-MAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 3 kI~VIGlG~~G~~l-A~~la~~~~G~~V~~~d~~~~-~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+|.|||+|..|.+. |..|.+. |++|+++|.++. ..+.|.+.... +..-.+. +.+.++|
T Consensus 6 ~i~viG~G~sG~salA~~L~~~--G~~V~~sD~~~~~~~~~L~~~gi~-----------------~~~g~~~-~~~~~~d 65 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDR--GYSVSGSDLSEGKTVEKLKAKGAR-----------------FFLGHQE-EHVPEDA 65 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHC--CCeEEEECCCCChHHHHHHHCCCE-----------------EeCCCCH-HHcCCCC
Confidence 49999999999997 8899998 999999997542 23334331111 1111122 3366789
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHH---------HH-HhhcCCCCEEEEeeCCccccHHH-HHHHHHhc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------VI-ADVSKSDKIVVEKSTVPVKTAEA-IEKILTHN 144 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~---------~i-~~~l~~~~iVv~~STv~~gt~~~-l~~~l~~~ 144 (362)
+||++-.-|.+ .+ .+..+.+ ++ ...++...+|.++.|..=.||.. +..+|...
T Consensus 66 ~vV~SpgI~~~--------~p---~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~ 129 (809)
T PRK14573 66 VVVYSSSISKD--------NV---EYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEA 129 (809)
T ss_pred EEEECCCcCCC--------CH---HHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 98887433321 12 2222221 11 22233336787777776666544 56677653
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.064 Score=52.30 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=32.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRI 39 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~ 39 (362)
|+|.|+|. |++|..++..|.++ |++|++++|++...
T Consensus 61 ~kVLVtGatG~IG~~l~~~Ll~~--G~~V~~l~R~~~~~ 97 (390)
T PLN02657 61 VTVLVVGATGYIGKFVVRELVRR--GYNVVAVAREKSGI 97 (390)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEEechhhc
Confidence 68999985 99999999999998 99999999987653
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.12 Score=47.70 Aligned_cols=69 Identities=20% Similarity=0.423 Sum_probs=52.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.++.+.+++||
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~--~AtVt~chs~---------------------------------T~~l~~~~~~AD 203 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNE--NATVTICHSK---------------------------------TKNLKEVCKKAD 203 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899988642 224556678999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++-|.- +. ..++++|.+||+
T Consensus 204 IvIsAvGkp~~--------------i~------~~~ik~gavVID 228 (278)
T PRK14172 204 ILVVAIGRPKF--------------ID------EEYVKEGAIVID 228 (278)
T ss_pred EEEEcCCCcCc--------------cC------HHHcCCCcEEEE
Confidence 99999986631 11 234689999986
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.055 Score=53.92 Aligned_cols=85 Identities=14% Similarity=0.106 Sum_probs=55.9
Q ss_pred ceEEEEcCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh----hcC------CCEEEec
Q 017997 2 VKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ----CRG------KNLFFST 70 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la-~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~----~~~------~~l~~t~ 70 (362)
.||+|||.|.-|+..|..|+ +. |++|++|++.+.---.++-+..|.. +........ ... +++.+-.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~--g~~VtlfEk~p~pgGLvR~GVaPdh-~~~k~v~~~f~~~~~~~~v~f~gnv~VG~ 116 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHE--RVKVDIFEKLPNPYGLIRYGVAPDH-IHVKNTYKTFDPVFLSPNYRFFGNVHVGV 116 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhc--CCeEEEEecCCCCccEEEEeCCCCC-ccHHHHHHHHHHHHhhCCeEEEeeeEecC
Confidence 48999999999999999776 55 8999999998765544455544433 333322111 111 2334433
Q ss_pred C--HHhhhcCCcEEEEeccCC
Q 017997 71 D--VEKHVSEADIVFVSVNTP 89 (362)
Q Consensus 71 d--~~~a~~~aDvVii~vptp 89 (362)
| .++..+..|.||+++...
T Consensus 117 Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 117 DLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred ccCHHHHHhcCCEEEEEcCCC
Confidence 3 556557899999998754
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.031 Score=54.45 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=31.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
..|.|||.|.+|+++|..|++..||++|+++|+.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 47999999999999999999876789999999874
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.024 Score=55.63 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=31.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|+|.|||.|..|+++|..|+++ |++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR--GIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCcEEEEEcCCc
Confidence 7999999999999999999999 999999998764
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.11 Score=48.02 Aligned_cols=69 Identities=22% Similarity=0.359 Sum_probs=51.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHH--cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIG-AGYVGGPTMAVIAL--KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~--~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
.+++||| .+.+|.|+|..|.+ + +..|+.+... |.++.+.+++
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~--~atVtvchs~---------------------------------T~~l~~~~k~ 203 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSE--NATVTLCHTG---------------------------------TRDLAAHTRR 203 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccC--CCEEEEeCCC---------------------------------CCCHHHHHHh
Confidence 4799999 57899999999988 5 7888887542 2345666899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
||+||.+++-|.- +. ..+++++++||+
T Consensus 204 ADIvV~AvGkp~~--------------i~------~~~ik~GavVID 230 (284)
T PRK14193 204 ADIIVAAAGVAHL--------------VT------ADMVKPGAAVLD 230 (284)
T ss_pred CCEEEEecCCcCc--------------cC------HHHcCCCCEEEE
Confidence 9999999986631 11 245789999886
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.055 Score=55.42 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=29.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
.+|.|||.|..|+..|..|++. |++|+++|..
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~--G~~V~v~e~~ 169 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRM--GHAVTIFEAG 169 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecC
Confidence 4799999999999999999998 9999999964
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.12 Score=48.13 Aligned_cols=69 Identities=25% Similarity=0.368 Sum_probs=52.6
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.|+.+.+++||
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~--~aTVt~chs~---------------------------------T~~l~~~~~~AD 205 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGE--NCTVTTVHSA---------------------------------TRDLADYCSKAD 205 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8999987642 234556688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++.|--. . ..+++++++||+
T Consensus 206 IvVsAvGkp~~i--------------~------~~~ik~gaiVID 230 (294)
T PRK14187 206 ILVAAVGIPNFV--------------K------YSWIKKGAIVID 230 (294)
T ss_pred EEEEccCCcCcc--------------C------HHHcCCCCEEEE
Confidence 999999866311 1 234678999986
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.13 Score=49.16 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=34.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
|+|.|.| .|++|..++..|++. |++|++++++.+..+.+
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~--G~~V~~~~r~~~~~~~~ 50 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQR--GYTVHATLRDPAKSLHL 50 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCChHHHHHH
Confidence 7899998 699999999999999 99999999987765544
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.036 Score=52.41 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=29.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
.|.|||.|..|+++|..|++. |++|+++|.+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~--G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR--GHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT--TSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCeEEEEeec
Confidence 589999999999999999998 9999999986
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.081 Score=52.90 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=30.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.+|.|||.|..|+..|..|++. |++|+++|..+
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~--G~~V~i~e~~~ 174 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARA--GVQVVVFDRHP 174 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCC
Confidence 4799999999999999999998 99999999865
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.032 Score=53.90 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=30.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|+|||.|.+|+++|..|++. |++|+++|..+
T Consensus 5 ~~vvVIGgGi~Gls~A~~La~~--G~~V~vie~~~ 37 (387)
T COG0665 5 MDVVIIGGGIVGLSAAYYLAER--GADVTVLEAGE 37 (387)
T ss_pred ceEEEECCcHHHHHHHHHHHHc--CCEEEEEecCc
Confidence 5899999999999999999999 89999999765
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.13 Score=47.61 Aligned_cols=69 Identities=25% Similarity=0.444 Sum_probs=52.1
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+++||| ...+|.|+|..|.++ |..|+.+... |.++.+.+++||
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~--~ATVtichs~---------------------------------T~~L~~~~~~AD 204 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKE--NCSVTICHSK---------------------------------THNLSSITSKAD 204 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 467999999999988 8899987631 234556688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++-|.- +. ...+++|.+||+
T Consensus 205 IvV~AvGkp~~--------------i~------~~~vk~GavVID 229 (288)
T PRK14171 205 IVVAAIGSPLK--------------LT------AEYFNPESIVID 229 (288)
T ss_pred EEEEccCCCCc--------------cC------HHHcCCCCEEEE
Confidence 99999986531 11 245689999886
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.042 Score=51.12 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=33.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSD 45 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~ 45 (362)
||.|+|+|.+|..+|..|+.. |. +++++|.+.-....++++
T Consensus 1 kVLIvGaGGLGs~vA~~La~a--GVg~ItlvD~D~Ve~sNL~RQ 42 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW--GVRHITFVDSGKVSYSNPVRQ 42 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCEeccccCCcc
Confidence 689999999999999999999 54 799999765444445443
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.064 Score=49.75 Aligned_cols=44 Identities=20% Similarity=0.316 Sum_probs=35.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ 46 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~ 46 (362)
.+|.|||+|.+|+++|..|+..+- -+++++|-|.-....++++.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGV-G~i~lvD~D~Ve~SNLnRQ~ 71 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGI-GKFTIADFDVFELRNFNRQA 71 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCC-CeEEEEeCCCcchhcccccc
Confidence 379999999999999999999943 27999998866666666543
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.13 Score=46.94 Aligned_cols=130 Identities=23% Similarity=0.349 Sum_probs=72.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
.||+|+|+ |.+|.|+...|..+ |.. +..+||+... .-+.....++.... .+ ..+.-...++++++++
T Consensus 29 ~KVAvlGAaGGIGQPLSLLlK~n-p~Vs~LaLYDi~~~--~GVaaDlSHI~T~s---~V-----~g~~g~~~L~~al~~a 97 (345)
T KOG1494|consen 29 LKVAVLGAAGGIGQPLSLLLKLN-PLVSELALYDIANT--PGVAADLSHINTNS---SV-----VGFTGADGLENALKGA 97 (345)
T ss_pred ceEEEEecCCccCccHHHHHhcC-cccceeeeeecccC--CcccccccccCCCC---ce-----eccCChhHHHHHhcCC
Confidence 48999995 89999999877654 322 6788998521 11111111111000 00 0011123567789999
Q ss_pred cEEEEeccCCCCCCCCCCC--CCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH-HHHHHHHhcc
Q 017997 80 DIVFVSVNTPTKTQGLGAG--KAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE-AIEKILTHNS 145 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~--~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~-~l~~~l~~~~ 145 (362)
|+|+|+-..|-.. |+-.+ -..+-..+++....+++.++.-.+.++ |.|+.++- ...+.+.+.+
T Consensus 98 dvVvIPAGVPRKP-GMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vI--sNPVNstVPIaaevlKk~G 163 (345)
T KOG1494|consen 98 DVVVIPAGVPRKP-GMTRDDLFNINAGIVKTLAAAIAKCCPNALILVI--SNPVNSTVPIAAEVLKKAG 163 (345)
T ss_pred CEEEecCCCCCCC-CCcHHHhhhcchHHHHHHHHHHHhhCccceeEee--cCcccccchHHHHHHHHcC
Confidence 9999998877543 32211 123335566667777777755444344 34555543 3355666653
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.029 Score=55.65 Aligned_cols=87 Identities=18% Similarity=0.192 Sum_probs=56.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCC-Ch-HHHHhhhcCCCEEE--------ecC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEP-GL-DGVVKQCRGKNLFF--------STD 71 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~-~l-~~~~~~~~~~~l~~--------t~d 71 (362)
.+|+|||.|.-|+..|..|++. ||.|++|++.+.-.-.+.-|...+..+ .+ +..++.+...++++ .-+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~--G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it 201 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA--GHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDIT 201 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC--CCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCC
Confidence 4899999999999999999999 999999998765544444444333222 11 11111111111322 234
Q ss_pred HHhhhcCCcEEEEeccCCC
Q 017997 72 VEKHVSEADIVFVSVNTPT 90 (362)
Q Consensus 72 ~~~a~~~aDvVii~vptp~ 90 (362)
.++..++.|.|++|+++..
T Consensus 202 ~~~L~~e~Dav~l~~G~~~ 220 (457)
T COG0493 202 LEELLKEYDAVFLATGAGK 220 (457)
T ss_pred HHHHHHhhCEEEEeccccC
Confidence 5666678899999988754
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.066 Score=55.89 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=30.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|+|||.|..|++.|..|++. |++|+++|.++
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~--G~~V~V~E~~~ 360 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARN--GVAVTVYDRHP 360 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 4899999999999999999999 99999999864
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.028 Score=55.15 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=31.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~ 37 (362)
|||.|||.|.-|+++|..|+++ |+ +|++++++++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~--g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH--SHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCCCEEEEecCCc
Confidence 7999999999999999999998 75 9999998754
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.029 Score=54.52 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=31.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
++|.|||.|..|+.+|..|++. |++|+++|++++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~--g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQ--GIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCcEEEEeeCcc
Confidence 4899999999999999999999 999999998753
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.031 Score=54.25 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=31.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
++|.|||.|..|+.+|..|++. |++|+++++.+.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 40 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRA--GWDVDVFERSPT 40 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence 5899999999999999999999 999999998753
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.031 Score=54.36 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=31.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
+++|.|||.|..|+.+|..|++. |++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~--G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA--GLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC--CCcEEEEccC
Confidence 36899999999999999999999 9999999997
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.049 Score=38.99 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=26.2
Q ss_pred EEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 6 CIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 6 VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|||.|.-|+..|..|++. |++|++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--GYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--TSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHC--CCcEEEEecCc
Confidence 899999999999999999 99999999863
|
... |
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.15 Score=47.07 Aligned_cols=69 Identities=17% Similarity=0.339 Sum_probs=51.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ +..|+.+... |.++.+.+++||
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~--~AtVtichs~---------------------------------T~nl~~~~~~AD 202 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLER--HATVTIAHSR---------------------------------TADLAGEVGRAD 202 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899987531 234556678999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++-|.- +. ...++++++||+
T Consensus 203 IvI~AvGk~~~--------------i~------~~~ik~gaiVID 227 (282)
T PRK14182 203 ILVAAIGKAEL--------------VK------GAWVKEGAVVID 227 (282)
T ss_pred EEEEecCCcCc--------------cC------HHHcCCCCEEEE
Confidence 99999986531 11 235688999986
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.024 Score=54.53 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=32.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.+|+|||+|.+|+.++..|++. |. +++++|-|.=....|++
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~--GVgeI~LVD~D~Ve~SNLnR 218 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKT--PVREIHLFDGDDFLQHNAFR 218 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHc--CCCEEEEECCCEeccccccc
Confidence 4899999999999999999999 54 89999987444334443
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.031 Score=54.04 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=31.1
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
|++|.|||.|..|+++|..|++. |++|+++|..
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~--G~~v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQK--GIKTTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcC--CCeEEEecCC
Confidence 67899999999999999999999 9999999975
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.037 Score=50.36 Aligned_cols=41 Identities=15% Similarity=0.350 Sum_probs=33.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.||+|||+|.+|+.++..|+.. |. +++++|.|.-....+++
T Consensus 33 ~~VliiG~GglGs~va~~La~~--Gvg~i~lvD~D~ve~sNL~R 74 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAA--GVGTLTLVDFDTVSLSNLQR 74 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCEECcchhhh
Confidence 3899999999999999999999 54 89999987554445544
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.13 Score=40.85 Aligned_cols=87 Identities=23% Similarity=0.226 Sum_probs=47.2
Q ss_pred cCChhHHHHHHHHHHcC--CCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--CCcEE
Q 017997 8 GAGYVGGPTMAVIALKC--PSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--EADIV 82 (362)
Q Consensus 8 GlG~~G~~lA~~la~~~--~G~~V~~-~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~aDvV 82 (362)
|+|.||..++..|.+.. .+.+|.+ +|++ ..+..- .... .....+++++++.+. +.|+|
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~-----------~~~~-----~~~~~~~~~~~~~~~~~~~dvv 63 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD-----------WAAS-----FPDEAFTTDLEELIDDPDIDVV 63 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT-----------HHHH-----HTHSCEESSHHHHHTHTT-SEE
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh-----------hhhh-----cccccccCCHHHHhcCcCCCEE
Confidence 89999999999998762 1355554 4666 111100 0000 012346788888777 89999
Q ss_pred EEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCC
Q 017997 83 FVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 83 ii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv 129 (362)
|-|.+ . ..+.+-+.+.++.|.-||..|.-
T Consensus 64 VE~t~--~----------------~~~~~~~~~~L~~G~~VVt~nk~ 92 (117)
T PF03447_consen 64 VECTS--S----------------EAVAEYYEKALERGKHVVTANKG 92 (117)
T ss_dssp EE-SS--C----------------HHHHHHHHHHHHTTCEEEES-HH
T ss_pred EECCC--c----------------hHHHHHHHHHHHCCCeEEEECHH
Confidence 99943 2 12233344556677777765553
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.042 Score=59.51 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=30.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.||+|||.|.-|++.|..|++. ||+|++||..+
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~--G~~VtVfE~~~ 339 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVE--GFPVTVFEAFH 339 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCC
Confidence 4899999999999999999999 99999999864
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.13 Score=48.01 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=29.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|.|.| .|++|..++..|+++ ||+|++++++.
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~--G~~V~~~~R~~ 40 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSR--GYTVHAAVQKN 40 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEEcCc
Confidence 4688998 599999999999999 99999998853
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.16 Score=47.38 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=34.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCH---HHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISV---SRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~---~~~~~l~~ 44 (362)
.++.|+|+|..+.+++..|+.. | .+|++++|++ ++.+.+.+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~--g~~~i~i~nRt~~~~~ka~~la~ 169 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIE--GLKEIKLFNRRDEFFDKALAFAQ 169 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCccHHHHHHHHHH
Confidence 3689999999999999999987 5 4899999994 57766654
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.051 Score=44.48 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=29.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~ 37 (362)
.||.|+|+|.+|+.+|..|++. |. +++++|.+.=
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~--Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS--GVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH--TTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHh--CCCceeecCCcce
Confidence 4899999999999999999999 76 7999998643
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.15 Score=47.51 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=33.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCH---HHHHHHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISV---SRINAWN 43 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~-V~~~d~~~---~~~~~l~ 43 (362)
++.|+|+|.+|.+++..|++. |.+ |++++|++ ++.+.+.
T Consensus 128 ~vlI~GAGGagrAia~~La~~--G~~~V~I~~R~~~~~~~a~~l~ 170 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALD--GAKEITIFNIKDDFYERAEQTA 170 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCchHHHHHHHHH
Confidence 688999999999999999998 875 99999996 5665544
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.095 Score=46.03 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=33.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.||.|+|+|.+|..++..|+.. |. +++++|.+.-....+++
T Consensus 22 s~VlIiG~gglG~evak~La~~--GVg~i~lvD~d~ve~snL~r 63 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLS--GIGSLTILDDRTVTEEDLGA 63 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHc--CCCEEEEEECCcccHhhCCC
Confidence 4799999999999999999999 65 69999987544444443
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.14 Score=48.41 Aligned_cols=69 Identities=23% Similarity=0.340 Sum_probs=52.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.|+.+.+++||
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~--~ATVTicHs~---------------------------------T~nl~~~~~~AD 259 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRH--DATVSTVHAF---------------------------------TKDPEQITRKAD 259 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHC--CCEEEEEcCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 567999999999988 8899887531 234566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++-|--. . ...+++|++||+
T Consensus 260 IvIsAvGkp~~v--------------~------~d~vk~GavVID 284 (345)
T PLN02897 260 IVIAAAGIPNLV--------------R------GSWLKPGAVVID 284 (345)
T ss_pred EEEEccCCcCcc--------------C------HHHcCCCCEEEE
Confidence 999999866311 1 245689999986
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.59 Score=46.78 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=30.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.||.|+|+|.-|.+.|..|.+. |.+|+++|.++
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~--g~~v~~~d~~~ 41 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAH--LPAQALTLFCN 41 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHc--CCEEEEEcCCC
Confidence 4799999999999999999999 99999999653
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.035 Score=53.49 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=31.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
++|.|||.|..|+.+|..|++. |++|++++++++
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~~--g~~v~v~E~~~~ 38 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRRA--GIAVDLVEIDPE 38 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence 5899999999999999999998 999999998753
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.74 Score=46.71 Aligned_cols=112 Identities=18% Similarity=0.250 Sum_probs=65.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcC--CCCCCCCChHHHHhhhcCCCEEE-ecCHHhhh-
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSD--QLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~--~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~- 76 (362)
.+|.+||+|.-+ ++..+++. ++ .+|+++|+|++.++..++. ...+....++ ..++++ ..|..+-+
T Consensus 299 ~rVL~IG~G~G~--~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~-------dprv~vi~~Da~~~l~ 368 (521)
T PRK03612 299 RRVLVLGGGDGL--ALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALD-------DPRVTVVNDDAFNWLR 368 (521)
T ss_pred CeEEEEcCCccH--HHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccC-------CCceEEEEChHHHHHH
Confidence 479999999544 44555555 23 6999999999999987762 1111100000 123332 23433322
Q ss_pred ---cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCc
Q 017997 77 ---SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (362)
Q Consensus 77 ---~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~ 130 (362)
+..|+|++..|.|... ...--+-.+.++.+.+.++++-+++..+..+
T Consensus 369 ~~~~~fDvIi~D~~~~~~~-------~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~ 418 (521)
T PRK03612 369 KLAEKFDVIIVDLPDPSNP-------ALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP 418 (521)
T ss_pred hCCCCCCEEEEeCCCCCCc-------chhccchHHHHHHHHHhcCCCeEEEEecCCc
Confidence 4689999987655321 0000112457788888999988887655433
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.039 Score=54.05 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=30.9
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|++|.|||.|.+|+..|..|++. |++|++++..+
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~--Gl~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKR--GVPVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEEccC
Confidence 36799999999999999999999 99999999644
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.13 Score=47.87 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=35.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
.++|+|+|.+|++.+.-....+ --+++++|+|+++.+..++
T Consensus 195 tvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 195 TVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred EEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHh
Confidence 6899999999999988776663 3589999999999998775
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.12 Score=48.86 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=49.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~-~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++.|.|-|.+|..+|.++... |.+|+++++||-+ ++++.+| +++.+ .++|+..+|+
T Consensus 211 ~vVV~GYG~vGrG~A~~~rg~--GA~ViVtEvDPI~AleA~MdG--------------------f~V~~-m~~Aa~~gDi 267 (420)
T COG0499 211 NVVVAGYGWVGRGIAMRLRGM--GARVIVTEVDPIRALEAAMDG--------------------FRVMT-MEEAAKTGDI 267 (420)
T ss_pred eEEEecccccchHHHHHhhcC--CCeEEEEecCchHHHHHhhcC--------------------cEEEE-hHHhhhcCCE
Confidence 677889999999999999988 9999999999854 3344332 55443 5667899999
Q ss_pred EEEeccC
Q 017997 82 VFVSVNT 88 (362)
Q Consensus 82 Vii~vpt 88 (362)
+|.|+..
T Consensus 268 fiT~TGn 274 (420)
T COG0499 268 FVTATGN 274 (420)
T ss_pred EEEccCC
Confidence 9999763
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.041 Score=45.53 Aligned_cols=40 Identities=15% Similarity=0.383 Sum_probs=33.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
||.|+|+|.+|..++..|++. |. +++++|.+.-....+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~--Gv~~i~ivD~d~v~~~nl~r 41 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS--GVGKITLIDFDTVELSNLNR 41 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEEcCCCcCcchhhc
Confidence 689999999999999999999 76 79999987655555544
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.091 Score=47.66 Aligned_cols=87 Identities=21% Similarity=0.264 Sum_probs=51.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC--------C-CCeEEEEeCCHHHHHHHHcCCCCCCCCChHHH---Hhhhc---CCCE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC--------P-SIEVAVVDISVSRINAWNSDQLPIYEPGLDGV---VKQCR---GKNL 66 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~--------~-G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~---~~~~~---~~~l 66 (362)
.||.|||+|.+|+.++..|++.+ + |.+++++|.|.=....|+++.....+-|..+. .+.+. .-++
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~~~~i 91 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAMGTDW 91 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhccCceE
Confidence 48999999999999999999862 0 33899999876555566655222122232221 11111 1112
Q ss_pred EEec---CHHhhhcCCcEEEEeccC
Q 017997 67 FFST---DVEKHVSEADIVFVSVNT 88 (362)
Q Consensus 67 ~~t~---d~~~a~~~aDvVii~vpt 88 (362)
+... +..+.+.++|+||-|+.+
T Consensus 92 ~a~~~~~~~~~~~~~~DiVi~avDn 116 (244)
T TIGR03736 92 TAHPERVERSSTLHRPDIVIGCVDN 116 (244)
T ss_pred EEEEeeeCchhhhcCCCEEEECCCC
Confidence 2111 112235689999999864
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.33 Score=43.36 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=43.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC--CHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec---CHHhhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI--SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST---DVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~--~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~---d~~~a~ 76 (362)
++|-|||.|.++..=+..|.+. |.+|+++.. +++-.+....+ ++++.. +..+ +
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~--gA~VtVVap~i~~el~~l~~~~-------------------~i~~~~r~~~~~d-l 83 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKK--GCYVYILSKKFSKEFLDLKKYG-------------------NLKLIKGNYDKEF-I 83 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCCCHHHHHHHhCC-------------------CEEEEeCCCChHH-h
Confidence 4799999999999989999998 889999854 44432222222 232211 2233 7
Q ss_pred cCCcEEEEecc
Q 017997 77 SEADIVFVSVN 87 (362)
Q Consensus 77 ~~aDvVii~vp 87 (362)
.++++||.|+.
T Consensus 84 ~g~~LViaATd 94 (223)
T PRK05562 84 KDKHLIVIATD 94 (223)
T ss_pred CCCcEEEECCC
Confidence 89999999964
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.45 Score=46.52 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=28.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~ 35 (362)
++|+|.|.|.+|..+|..|.+. |.+|+ +.|.+
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~--GakVVaVsD~~ 239 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEK--GGKIVAVSDIT 239 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCEEEEEECCC
Confidence 5899999999999999999998 89998 55765
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.17 Score=48.24 Aligned_cols=69 Identities=23% Similarity=0.403 Sum_probs=52.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.||| ...+|.|+|..|.++ +..|+.+... |.|+.+.+++||
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~--~ATVTicHs~---------------------------------T~nl~~~~r~AD 276 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQRE--DATVSIVHSR---------------------------------TKNPEEITREAD 276 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHC--CCeEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999998 8899987531 234556689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++.|--. . ...+++|++||+
T Consensus 277 IVIsAvGkp~~i--------------~------~d~vK~GAvVID 301 (364)
T PLN02616 277 IIISAVGQPNMV--------------R------GSWIKPGAVVID 301 (364)
T ss_pred EEEEcCCCcCcC--------------C------HHHcCCCCEEEe
Confidence 999999866311 1 245689999886
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=94.42 E-value=1 Score=35.45 Aligned_cols=95 Identities=19% Similarity=0.193 Sum_probs=57.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-cCH----Hhhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDV----EKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~----~~a~ 76 (362)
++|.-+|+|. |. ++..+++..++.+|+++|.++..++..++..... + ..++++. .|. ....
T Consensus 21 ~~vldlG~G~-G~-~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~---------~~~~~~~~~~~~~~~~~~~ 86 (124)
T TIGR02469 21 DVLWDIGAGS-GS-ITIEAARLVPNGRVYAIERNPEALRLIERNARRF---G---------VSNIVIVEGDAPEALEDSL 86 (124)
T ss_pred CEEEEeCCCC-CH-HHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh---C---------CCceEEEeccccccChhhc
Confidence 3678899998 54 4556666544578999999999888765421000 0 0112211 221 1113
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
...|+|+..-+ + ....+.++.+.+.++++..++.
T Consensus 87 ~~~D~v~~~~~-~--------------~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 87 PEPDRVFIGGS-G--------------GLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred CCCCEEEECCc-c--------------hhHHHHHHHHHHHcCCCCEEEE
Confidence 57899988632 1 1235778888899998877654
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.54 Score=42.09 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=34.9
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++|.|+|+ |.+|..++..|+++ |++|+++++++++.+.+.
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~--G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAE--GARVVVTDRNEEAAERVA 46 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 57899985 99999999999999 999999999987766543
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.64 Score=36.08 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=62.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCH---HhhhcC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDV---EKHVSE 78 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~---~~a~~~ 78 (362)
+|--+|+|.=. ++..+++..++.+|+++|.+++.++..++.. .+.....++++ ..|. .+....
T Consensus 4 ~vLDlGcG~G~--~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~i~~~~~d~~~~~~~~~~ 70 (112)
T PF12847_consen 4 RVLDLGCGTGR--LSIALARLFPGARVVGVDISPEMLEIARERA-----------AEEGLSDRITFVQGDAEFDPDFLEP 70 (112)
T ss_dssp EEEEETTTTSH--HHHHHHHHHTTSEEEEEESSHHHHHHHHHHH-----------HHTTTTTTEEEEESCCHGGTTTSSC
T ss_pred EEEEEcCcCCH--HHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-----------HhcCCCCCeEEEECccccCcccCCC
Confidence 67788988744 3344555223899999999999998776531 00001234443 2344 222457
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
.|+|+..- ..... ..+......+++.+.+.++++..+++.
T Consensus 71 ~D~v~~~~-~~~~~-------~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 71 FDLVICSG-FTLHF-------LLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp EEEEEECS-GSGGG-------CCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECC-Ccccc-------ccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 89998874 11110 122244577888999999998877664
|
... |
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.56 Score=44.79 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.3
Q ss_pred ceEEEEcCChhHHHHHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIAL 22 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~ 22 (362)
++|+|+|+|.||..++..|.+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 689999999999999998876
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.1 Score=46.94 Aligned_cols=40 Identities=20% Similarity=0.212 Sum_probs=35.7
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
||+|.|.| .|.+|..++..|+++ |++|++.+++++..+.+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~--G~~Vi~~~r~~~~~~~~ 41 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAA--GARLYLAARDVERLERL 41 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHH
Confidence 67899998 699999999999999 99999999998876654
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.043 Score=53.65 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=31.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
++|.|||+|..|+.+|..|++. |++|+++++.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDS--GLRIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcC--CCEEEEEecCCc
Confidence 4799999999999999999999 999999998754
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.24 Score=46.20 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=32.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH-HHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV-SRINAWN 43 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~-~~~~~l~ 43 (362)
++|+|+|+|-+|. ||..+|++. |++|+++|++. .+-+.++
T Consensus 183 ~~vgI~GlGGLGh-~aVq~AKAM-G~rV~vis~~~~kkeea~~ 223 (360)
T KOG0023|consen 183 KWVGIVGLGGLGH-MAVQYAKAM-GMRVTVISTSSKKKEEAIK 223 (360)
T ss_pred cEEEEecCcccch-HHHHHHHHh-CcEEEEEeCCchhHHHHHH
Confidence 4799999999885 899999875 99999999987 3444444
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.54 Score=42.27 Aligned_cols=87 Identities=16% Similarity=0.173 Sum_probs=50.7
Q ss_pred EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh-cCCcEEEEeccCCCCCCCCCCCCCCChHHHH
Q 017997 29 VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEADIVFVSVNTPTKTQGLGAGKAADLTYWE 107 (362)
Q Consensus 29 V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aDvVii~vptp~~~~g~~~~~~~d~~~l~ 107 (362)
|.++|+++++.+.+.+.. +....+|+++.+ .+.|+|++|+|+.. ..
T Consensus 5 vaV~D~~~e~a~~~a~~~------------------g~~~~~d~~eLl~~~vDaVviatp~~~---------------H~ 51 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERC------------------GAKIVSDFDEFLPEDVDIVVEAASQEA---------------VK 51 (229)
T ss_pred EEEECCCHHHHHHHHHHh------------------CCceECCHHHHhcCCCCEEEECCChHH---------------HH
Confidence 567899999988776521 134567788754 58999999987532 12
Q ss_pred HHHHHHHhhcCCCCEEEEeeCCcccc---HHHHHHHHHhccCCCceEEe
Q 017997 108 SAARVIADVSKSDKIVVEKSTVPVKT---AEAIEKILTHNSKGIKFQIL 153 (362)
Q Consensus 108 ~~~~~i~~~l~~~~iVv~~STv~~gt---~~~l~~~l~~~~~g~~~~v~ 153 (362)
+ ...+.++.|.-|+..|.....+ .+++.+..++. |..+++.
T Consensus 52 e---~a~~aL~aGkhVl~~s~gAlad~e~~~~l~~aA~~~--g~~l~i~ 95 (229)
T TIGR03855 52 E---YAEKILKNGKDLLIMSVGALADRELRERLREVARSS--GRKVYIP 95 (229)
T ss_pred H---HHHHHHHCCCCEEEECCcccCCHHHHHHHHHHHHhc--CCEEEEC
Confidence 2 2333445555555556543333 34455555443 3445544
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.25 Score=45.75 Aligned_cols=71 Identities=20% Similarity=0.426 Sum_probs=50.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCC--CCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCP--SIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~--G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
.+|.||| ...+|.|+|..|.++++ +..|+.+... |.++.+.+++
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------------------------------T~~l~~~~~~ 200 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------------------------------SENLTEILKT 200 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------------------------------CCCHHHHHhh
Confidence 4799999 46799999999987622 3577765421 2356666899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
||+||.+++.|.- +. ...++++++||+
T Consensus 201 ADIvV~AvG~p~~--------------i~------~~~ik~GavVID 227 (287)
T PRK14181 201 ADIIIAAIGVPLF--------------IK------EEMIAEKAVIVD 227 (287)
T ss_pred CCEEEEccCCcCc--------------cC------HHHcCCCCEEEE
Confidence 9999999987631 11 245789999986
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.1 Score=52.22 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=31.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
++|.|||.|..|+..|..|++. |++|+++|..+.
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~--G~~V~vie~~~~ 177 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARA--GHKVTVFERADR 177 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCC
Confidence 5899999999999999999998 999999998643
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.054 Score=52.93 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=29.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
+|.|||.|..|+++|..|++. |++|+++|+.
T Consensus 6 dV~IvGaG~~Gl~~A~~L~~~--G~~v~viE~~ 36 (405)
T PRK08850 6 DVAIIGGGMVGLALAAALKES--DLRIAVIEGQ 36 (405)
T ss_pred CEEEECccHHHHHHHHHHHhC--CCEEEEEcCC
Confidence 799999999999999999998 9999999985
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.11 Score=46.90 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=35.6
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
+|.|.|+ |.+|..++..|++. |++|+++++++++.+.+.+
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~--g~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRR--GYRVLAACRKPDDVARMNS 44 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHhHHHHh
Confidence 6999998 99999999999999 9999999999988776543
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.053 Score=52.17 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=29.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.|.|||.|.+|+++|..|++. |++|+++|++.
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~--g~~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARR--GLRVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHC--CCeEEEEeccc
Confidence 499999999999999999999 99999999864
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.29 Score=49.67 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=36.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++.|+|+|.+|.+++..|++. |.+|++++|+.++.+.+.+
T Consensus 381 ~vlIlGaGGagrAia~~L~~~--G~~V~i~nR~~e~a~~la~ 420 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEK--GARVVIANRTYERAKELAD 420 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence 588999999999999999999 8899999999998888764
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.65 Score=42.11 Aligned_cols=40 Identities=8% Similarity=0.027 Sum_probs=35.1
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
|+|-|.|. |.+|..+|..|++. |++|++.++++++++.+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~ 41 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKK--GARVVISSRNEENLEKAL 41 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH
Confidence 78999985 88999999999999 999999999988776543
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.21 Score=45.97 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=44.6
Q ss_pred EEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEE
Q 017997 4 ICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIV 82 (362)
Q Consensus 4 I~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (362)
|.|.| +|++|..++..|++. |++|++++|+++..+.+... .... +.. ....+++.++|+|
T Consensus 1 vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~-------~~~~---------~~~-~~~~~~~~~~D~V 61 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKD--GHEVTILTRSPPAGANTKWE-------GYKP---------WAP-LAESEALEGADAV 61 (292)
T ss_pred CEEEcccchhhHHHHHHHHHc--CCEEEEEeCCCCCCCcccce-------eeec---------ccc-cchhhhcCCCCEE
Confidence 35676 699999999999998 99999999987654322110 0000 000 2223457889999
Q ss_pred EEeccCC
Q 017997 83 FVSVNTP 89 (362)
Q Consensus 83 ii~vptp 89 (362)
|-|...+
T Consensus 62 vh~a~~~ 68 (292)
T TIGR01777 62 INLAGEP 68 (292)
T ss_pred EECCCCC
Confidence 9988653
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.32 Score=45.19 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=37.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~ 44 (362)
.++.|+|+|-.+.+++..|++. | .++++++|+.++.+++.+
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~--g~~~i~V~NRt~~ra~~La~ 168 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEA--GAKRITVVNRTRERAEELAD 168 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHH
Confidence 4699999999999999999999 7 589999999999988875
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.9 Score=45.26 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=28.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.||.|+|+|.-|.+.+..|. . |.+|+++|.+++
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~-~--g~~v~v~D~~~~ 39 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQ-N--KYDVIVYDDLKA 39 (454)
T ss_pred CEEEEEeecHHHHHHHHHHh-C--CCEEEEECCCCC
Confidence 37999999999999998887 6 899999996543
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.28 Score=48.04 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=28.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
|+|.|+|+|.-|.++|..|. . |++|+++|.+
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~--G~~V~~~D~~ 31 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-K--FGGVDIFDDK 31 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-C--CCeEEEEcCC
Confidence 78999999999999999998 8 9999999955
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.28 Score=46.80 Aligned_cols=39 Identities=13% Similarity=0.292 Sum_probs=33.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
++|.|.| .|++|..++..|++. |++|++++++++..+.+
T Consensus 6 k~iLVTGatGfIGs~l~~~L~~~--G~~V~~~~r~~~~~~~~ 45 (351)
T PLN02650 6 ETVCVTGASGFIGSWLVMRLLER--GYTVRATVRDPANVKKV 45 (351)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHC--CCEEEEEEcCcchhHHH
Confidence 5799998 599999999999999 99999999987655443
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.061 Score=51.85 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=29.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
.|.|||.|.+|+++|..|++. |++|+++|..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~--g~~V~l~e~~ 32 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKH--GKKTLLLEQF 32 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHC--CCeEEEEecc
Confidence 689999999999999999999 9999999985
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.89 Score=40.59 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=34.2
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
+++.|.|. |.+|..++..|+++ |++|++++++++..+.+.
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~ 47 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKA--GWDLALVARSQDALEALA 47 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 46788885 99999999999999 999999999987766543
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.23 Score=48.07 Aligned_cols=41 Identities=22% Similarity=0.451 Sum_probs=33.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.+|.|||+|.+|..++..|+.. |. +++++|.|.-....|++
T Consensus 42 ~~VliiG~GglG~~v~~~La~~--Gvg~i~ivD~D~ve~sNL~R 83 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASA--GVGTITLIDDDTVDVSNIHR 83 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEeCCEEccccccc
Confidence 3799999999999999999999 64 89999987544444544
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.27 Score=46.67 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=30.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~ 38 (362)
|+|.|.| .|++|..++..|++. |++|+++.++.+.
T Consensus 10 ~~vlItG~~GfIG~~l~~~L~~~--g~~V~~~~r~~~~ 45 (338)
T PLN00198 10 KTACVIGGTGFLASLLIKLLLQK--GYAVNTTVRDPEN 45 (338)
T ss_pred CeEEEECCchHHHHHHHHHHHHC--CCEEEEEECCCCC
Confidence 6899998 899999999999999 9999988887543
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.12 Score=48.61 Aligned_cols=36 Identities=11% Similarity=0.313 Sum_probs=31.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRI 39 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~ 39 (362)
++|.|.| .|++|..++..|++. |++|++.+++++..
T Consensus 6 k~vlVtG~~G~IG~~l~~~L~~~--G~~V~~~~r~~~~~ 42 (325)
T PLN02989 6 KVVCVTGASGYIASWIVKLLLFR--GYTINATVRDPKDR 42 (325)
T ss_pred CEEEEECCchHHHHHHHHHHHHC--CCEEEEEEcCCcch
Confidence 5788998 599999999999999 99999998886543
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.62 Score=44.35 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=32.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..+..+.+...+.+|+++|+++++++.+++
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 689999999998766655542114689999999999887654
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.26 Score=45.73 Aligned_cols=54 Identities=26% Similarity=0.478 Sum_probs=42.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHH----cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIG-AGYVGGPTMAVIAL----KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~----~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
.+|+||| ...+|.|+|..|.+ + +.+|+.+..+. .++.+.+
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~--~AtVt~~hs~t---------------------------------~~l~~~~ 202 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFA--NATVTVCHSRT---------------------------------PDLAEEC 202 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccC--CCEEEEEeCCc---------------------------------hhHHHHH
Confidence 4799999 57899999999998 5 67888877431 2455568
Q ss_pred cCCcEEEEeccCCC
Q 017997 77 SEADIVFVSVNTPT 90 (362)
Q Consensus 77 ~~aDvVii~vptp~ 90 (362)
++||+||.+++.|.
T Consensus 203 ~~ADIVI~AvG~p~ 216 (286)
T PRK14184 203 READFLFVAIGRPR 216 (286)
T ss_pred HhCCEEEEecCCCC
Confidence 89999999998763
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.14 Score=47.44 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=36.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
++.|+|+|..+.+++..|++. |. +|++++|++++.+.+.+
T Consensus 124 ~vlilGaGGaarAi~~aL~~~--g~~~i~i~nR~~~~a~~la~ 164 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDA--GFTDGTIVARNEKTGKALAE 164 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHH
Confidence 689999999999999999988 65 69999999999988765
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.071 Score=53.14 Aligned_cols=34 Identities=26% Similarity=0.616 Sum_probs=30.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.|+|||.|++|+++|..|++..||.+|+++|.+.
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 5999999999999999999976689999999763
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.12 Score=45.94 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=36.3
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
||+.|.|. |.+|..++..|++. |++|+++++++++++.+.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~--g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRND--GHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 68999986 89999999999998 9999999999988776643
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.26 Score=44.18 Aligned_cols=103 Identities=22% Similarity=0.250 Sum_probs=58.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|.=|||| |+.++..+|+. |.+|++.|.+++-++..+..- .|.++. + .-....+.|+...=...|+
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha---~e~gv~--i----~y~~~~~edl~~~~~~FDv 127 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARL--GASVTGIDASEKPIEVAKLHA---LESGVN--I----DYRQATVEDLASAGGQFDV 127 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHC--CCeeEEecCChHHHHHHHHhh---hhcccc--c----cchhhhHHHHHhcCCCccE
Confidence 356668887 45789999999 999999999998887654210 001110 0 0000011122211136677
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~ 130 (362)
|+.. . .-++ -+|. .+.++...+.++|+.+++. ||+-
T Consensus 128 V~cm--E-VlEH------v~dp---~~~~~~c~~lvkP~G~lf~-STin 163 (243)
T COG2227 128 VTCM--E-VLEH------VPDP---ESFLRACAKLVKPGGILFL-STIN 163 (243)
T ss_pred EEEh--h-HHHc------cCCH---HHHHHHHHHHcCCCcEEEE-eccc
Confidence 7654 1 1111 3333 4567788888999987754 6754
|
|
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.4 Score=44.40 Aligned_cols=84 Identities=23% Similarity=0.217 Sum_probs=59.5
Q ss_pred eEE-EEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 3 KIC-CIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 3 kI~-VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~-~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|++ |.|-|-+|-.-|+.|... |.+|++..+||-. +++..+ .++++ ..+++++..|
T Consensus 215 Kv~Vv~GYGdVGKgCaqaLkg~--g~~VivTEiDPI~ALQAaMe--------------------G~~V~-tm~ea~~e~d 271 (434)
T KOG1370|consen 215 KVAVVCGYGDVGKGCAQALKGF--GARVIVTEIDPICALQAAME--------------------GYEVT-TLEEAIREVD 271 (434)
T ss_pred cEEEEeccCccchhHHHHHhhc--CcEEEEeccCchHHHHHHhh--------------------ccEee-eHHHhhhcCC
Confidence 444 559999999999999877 8999999998733 333333 24544 4678899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+++.++... | -+...-...++.++||.+.
T Consensus 272 ifVTtTGc~------------d-----ii~~~H~~~mk~d~IvCN~ 300 (434)
T KOG1370|consen 272 IFVTTTGCK------------D-----IITGEHFDQMKNDAIVCNI 300 (434)
T ss_pred EEEEccCCc------------c-----hhhHHHHHhCcCCcEEecc
Confidence 999996631 1 1334455567888888764
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.059 Score=52.46 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=32.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|.+|.|||+|..|+.+|..|++.++|++|+++|+.++
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 4579999999999999999999844599999998753
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.36 Score=44.90 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=36.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.++.|+|+|-.|.+++..|++. |. ++++++|+.++.+++.+
T Consensus 128 k~vlilGaGGaarAi~~aL~~~--g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTH--GVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHC--CCCEEEEEcCCHHHHHHHHH
Confidence 3689999999999999999988 64 79999999999988865
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.22 Score=48.36 Aligned_cols=41 Identities=24% Similarity=0.419 Sum_probs=32.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.+|.|+|+|.+|..++..|+.. |. +++++|.+.-....+++
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~--Gvg~i~lvD~d~v~~sNl~R 177 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAA--GVGTLGIVDHDVVDRSNLQR 177 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCEecchhhcc
Confidence 3799999999999999999999 65 79999988443334443
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.21 Score=45.86 Aligned_cols=69 Identities=26% Similarity=0.420 Sum_probs=52.6
Q ss_pred ceEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.++.|||-+ .+|-|||..|... ++.|++.... |.|+.+.+++||
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~--naTVtvcHs~---------------------------------T~~l~~~~k~AD 201 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNA--NATVTVCHSR---------------------------------TKDLASITKNAD 201 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhC--CCEEEEEcCC---------------------------------CCCHHHHhhhCC
Confidence 478999965 6899999999998 8999998752 234555688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+++.++.-|.- +. ++.++++.+|++
T Consensus 202 Ivv~AvG~p~~--------------i~------~d~vk~gavVID 226 (283)
T COG0190 202 IVVVAVGKPHF--------------IK------ADMVKPGAVVID 226 (283)
T ss_pred EEEEecCCccc--------------cc------cccccCCCEEEe
Confidence 99999986531 12 356788888875
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.062 Score=52.12 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=30.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
+|.|||.|..|+++|..|++. |++|+++|..+
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~--G~~v~l~E~~~ 36 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQ--GRSVAVIEGGE 36 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhC--CCcEEEEcCCC
Confidence 799999999999999999999 99999999753
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.06 Score=52.59 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=31.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
+|.|||+|.+|+++|..|++. |++|+++|+.+.
T Consensus 5 dV~IvGaGpaGl~~A~~La~~--G~~v~viE~~~~ 37 (400)
T PRK08013 5 DVVIAGGGMVGLAVACGLQGS--GLRVAVLEQRVP 37 (400)
T ss_pred CEEEECcCHHHHHHHHHHhhC--CCEEEEEeCCCC
Confidence 799999999999999999998 999999998764
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.64 Score=46.20 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=58.6
Q ss_pred ceEEEEcC----ChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 2 VKICCIGA----GYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
.+|+|||+ |.+|..+..+|.+. || +|+.++...+.+ ..+.+..+.++.
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~--gf~g~v~~Vnp~~~~i------------------------~G~~~~~sl~~l 61 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG--GYKGKIYPVNPKAGEI------------------------LGVKAYPSVLEI 61 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC--CCCCcEEEECCCCCcc------------------------CCccccCCHHHC
Confidence 47999999 88999999999988 77 566665542211 123444566665
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCc
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~ 130 (362)
-...|++++++|.. .+.+++++..+. .-..+|+++|-++
T Consensus 62 p~~~Dlavi~vp~~---------------~~~~~l~e~~~~-gv~~~vi~s~gf~ 100 (447)
T TIGR02717 62 PDPVDLAVIVVPAK---------------YVPQVVEECGEK-GVKGAVVITAGFK 100 (447)
T ss_pred CCCCCEEEEecCHH---------------HHHHHHHHHHhc-CCCEEEEECCCcc
Confidence 56789999999842 346666666553 4456677666654
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.14 Score=47.03 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=35.9
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++|.|.|. |.+|..++..|++. |++|++.++++++++.+.+
T Consensus 4 k~vlItGasggiG~~la~~l~~~--G~~V~~~~r~~~~l~~~~~ 45 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQ--GYTVYGAARRVDKMEDLAS 45 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh
Confidence 46888885 99999999999998 9999999999998877654
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.069 Score=53.71 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=30.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|.|||.|.=|+..|+.||++ |++|.+++++.
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~--G~~V~VlE~~~ 36 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARA--GLKVTVLEKND 36 (487)
T ss_pred ccEEEECCChhHHHHHHHHHhC--CCEEEEEEecC
Confidence 6899999999999999999999 99999999753
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.076 Score=51.00 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=29.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.|.|||.|.+|+++|..|++. |++|+++|.+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~--G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR--GLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 589999999999999999998 99999999863
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.33 Score=45.25 Aligned_cols=53 Identities=17% Similarity=0.360 Sum_probs=41.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHH----cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIG-AGYVGGPTMAVIAL----KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~----~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
.+|+||| ...+|.|+|..|.+ . +..|+....+. .++++.+
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~--~atVt~~hs~t---------------------------------~~l~~~~ 204 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKES--NCTVTICHSAT---------------------------------KDIPSYT 204 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccC--CCEEEEEeCCc---------------------------------hhHHHHH
Confidence 4799999 56799999999987 5 67888776431 2345668
Q ss_pred cCCcEEEEeccCC
Q 017997 77 SEADIVFVSVNTP 89 (362)
Q Consensus 77 ~~aDvVii~vptp 89 (362)
++||+||.+++.|
T Consensus 205 ~~ADIvI~Avg~~ 217 (295)
T PRK14174 205 RQADILIAAIGKA 217 (295)
T ss_pred HhCCEEEEecCcc
Confidence 9999999999765
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.42 Score=44.79 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=28.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAW 42 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~-V~~~d~~~~~~~~l 42 (362)
++.|+|+|.+|+..+..+... |.+ |+++|+++++++..
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~--G~~~v~~~~~~~~rl~~a 185 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAA--GGSPPAVWETNPRRRDGA 185 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHhh
Confidence 688999999999666544445 665 66789988877654
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.16 Score=54.22 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=30.7
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|||.|.|. |.+|..++..|.++ |++|++++++.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~--G~~Vv~l~R~~ 34 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQ--GHEVVGIARHR 34 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEECCc
Confidence 79999995 99999999999999 99999999874
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.065 Score=52.07 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=30.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
+|.|||.|..|+++|..|++. |++|+++|+.+
T Consensus 8 dV~IvGaG~aGl~~A~~La~~--G~~v~liE~~~ 39 (392)
T PRK08773 8 DAVIVGGGVVGAACALALADA--GLSVALVEGRE 39 (392)
T ss_pred CEEEECcCHHHHHHHHHHhcC--CCEEEEEeCCC
Confidence 799999999999999999999 99999999864
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.069 Score=55.81 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|.|||.|.+|+++|..|++. |++|+++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~--G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARR--GWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 3799999999999999999999 99999999863
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.062 Score=52.47 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=31.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.||.|||.|..|+.+|..|++. |++|+++++.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~--G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR--GWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCc
Confidence 3799999999999999999998 999999998753
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.072 Score=51.89 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=31.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.+|.|||.|..|++.|..|++. |++|+++|+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~--G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHC--CCCEEEEECCCC
Confidence 4899999999999999999999 999999998764
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.1 Score=39.91 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=34.2
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
++|.|.|. |.+|..++..|+++ |++|+++++++++.+.+
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~--g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAAD--GAKVVIYDSNEEAAEAL 45 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCChhHHHHH
Confidence 47999985 99999999999999 99999999998776554
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.95 Score=40.97 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=34.7
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++|-|.| .|.+|..++..|+++ |++|+++++++++++.+.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~--G~~v~~~~r~~~~~~~~~ 43 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQ--GATLGLVARRTDALQAFA 43 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 5777777 799999999999999 999999999988776654
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.073 Score=51.65 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=31.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
++|.|||.|..|+..|..|+++ |++|+++++.++
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~--G~~v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGAR--GHSVTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhc--CCcEEEEeCCCc
Confidence 3799999999999999999999 999999998764
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.15 Score=51.12 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=52.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCC-C-----hHHHHhhh---cCCCEEEec--
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEP-G-----LDGVVKQC---RGKNLFFST-- 70 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~-~-----l~~~~~~~---~~~~l~~t~-- 70 (362)
.||+|||.|.-|+..|..|++...||+|++||+.+.---.++.+..|-+.. . +..++... ..+++.+..
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~dv 106 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGRDV 106 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECccc
Confidence 479999999999999999987323999999998864333333333222211 0 11111110 011233322
Q ss_pred CHHhhhcCCcEEEEeccCC
Q 017997 71 DVEKHVSEADIVFVSVNTP 89 (362)
Q Consensus 71 d~~~a~~~aDvVii~vptp 89 (362)
+.++.....|.||+++...
T Consensus 107 tl~~L~~~yDaVIlAtGa~ 125 (491)
T PLN02852 107 SLSELRDLYHVVVLAYGAE 125 (491)
T ss_pred cHHHHhhhCCEEEEecCCC
Confidence 3445446799999998864
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=1.2 Score=43.89 Aligned_cols=30 Identities=20% Similarity=0.072 Sum_probs=27.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEE-Ee
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VD 33 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~-~d 33 (362)
++|+|.|.|.||...|..|.+. |.+|++ -|
T Consensus 229 ~rVaVQGfGNVG~~aA~~L~e~--GAkVVaVSD 259 (444)
T PRK14031 229 KVCLVSGSGNVAQYTAEKVLEL--GGKVVTMSD 259 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEC
Confidence 5899999999999999999998 999988 57
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.077 Score=51.45 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=30.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
+|.|||.|..|+.+|..|+++ |++|+++|+.+.
T Consensus 5 dviIvGgG~aGl~~A~~L~~~--G~~v~v~E~~~~ 37 (392)
T PRK09126 5 DIVVVGAGPAGLSFARSLAGS--GLKVTLIERQPL 37 (392)
T ss_pred cEEEECcCHHHHHHHHHHHhC--CCcEEEEeCCCc
Confidence 699999999999999999999 999999998653
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.077 Score=52.54 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=31.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|+|+|+|+|.-|++.|..|+++ ||+|++|....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~--g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA--GYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC--CCceEEEeccC
Confidence 7999999999999999999999 99999998764
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.59 Score=42.53 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=62.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.-+|+|. |. ++..+++. |. +|+++|+++..++..++... ..++ ...+.+... + ...|
T Consensus 121 ~~VLDiGcGs-G~-l~i~~~~~--g~~~v~giDis~~~l~~A~~n~~---~~~~--------~~~~~~~~~--~--~~fD 181 (250)
T PRK00517 121 KTVLDVGCGS-GI-LAIAAAKL--GAKKVLAVDIDPQAVEAARENAE---LNGV--------ELNVYLPQG--D--LKAD 181 (250)
T ss_pred CEEEEeCCcH-HH-HHHHHHHc--CCCeEEEEECCHHHHHHHHHHHH---HcCC--------CceEEEccC--C--CCcC
Confidence 3688899998 64 55566666 44 59999999999886654210 0000 011222111 0 1578
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
+|+..... ..+...++++.+.++++..++.. .+.....+.+...+.+.
T Consensus 182 ~Vvani~~---------------~~~~~l~~~~~~~LkpgG~lils-gi~~~~~~~v~~~l~~~ 229 (250)
T PRK00517 182 VIVANILA---------------NPLLELAPDLARLLKPGGRLILS-GILEEQADEVLEAYEEA 229 (250)
T ss_pred EEEEcCcH---------------HHHHHHHHHHHHhcCCCcEEEEE-ECcHhhHHHHHHHHHHC
Confidence 88754321 23466778888999998887663 33333344555555543
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=1.2 Score=39.72 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=34.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++|.|.|. |.+|..+|..|++. |++|+++++++++.+.+.
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~--G~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEA--GATVAFNDGLAAEARELA 48 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH
Confidence 46888885 99999999999999 999999999988776543
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.063 Score=53.09 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++++|||+|.-|++.|++|.+. |++|+++.++.
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~--g~~v~vfEr~~ 39 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLRE--GHEVVVFERTD 39 (448)
T ss_pred CceEEECcchHHHHHHHHHHHC--CCCceEEEecC
Confidence 4799999999999999999999 99999998864
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.1 Score=51.72 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=32.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
||||.|||.|.-|...|..|.+.+++++|+++|.++
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 899999999999999999998776679999999874
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.071 Score=51.68 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=30.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
+|.|||.|.+|+.+|..|+++ |++|+++|+++
T Consensus 9 dViIVGaG~~Gl~~A~~L~~~--G~~v~liE~~~ 40 (388)
T PRK07494 9 DIAVIGGGPAGLAAAIALARA--GASVALVAPEP 40 (388)
T ss_pred CEEEECcCHHHHHHHHHHhcC--CCeEEEEeCCC
Confidence 599999999999999999998 99999999874
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=1 Score=41.30 Aligned_cols=41 Identities=10% Similarity=-0.048 Sum_probs=35.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++|.|.|+ |.+|..++..|+++ |++|+++++++++.+.+.+
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~--G~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAA--GHRVVGTVRSEAARADFEA 46 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhC--cCEEEEEeCCHHHHHHHHh
Confidence 36888885 99999999999999 9999999999988776654
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.083 Score=55.29 Aligned_cols=83 Identities=14% Similarity=0.314 Sum_probs=51.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHH------HhhhcC-CCEEE----
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGV------VKQCRG-KNLFF---- 68 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~------~~~~~~-~~l~~---- 68 (362)
.+|+|+|+| +|++.|..|+.. |. +++++|.|.=....||.........|..+. +.++.. -++..
T Consensus 108 ~~V~IvG~G-lGs~~a~~Lara--GvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~ 184 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAE--GLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG 184 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHc--cCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 379999999 999999999999 63 899999876555566652111122332222 111111 11221
Q ss_pred -e-cCHHhhhcCCcEEEEecc
Q 017997 69 -S-TDVEKHVSEADIVFVSVN 87 (362)
Q Consensus 69 -t-~d~~~a~~~aDvVii~vp 87 (362)
+ .+.++.++++|+||-|+.
T Consensus 185 i~~~n~~~~l~~~DlVvD~~D 205 (722)
T PRK07877 185 LTEDNVDAFLDGLDVVVEECD 205 (722)
T ss_pred CCHHHHHHHhcCCCEEEECCC
Confidence 1 235555789999999965
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.075 Score=51.20 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=30.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.|.|||+|..|+.+|..|+++ |++|+++|+++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~--G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS--GLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC--CCEEEEEeCCCc
Confidence 389999999999999999999 999999999864
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=93.53 E-value=1.9 Score=40.67 Aligned_cols=110 Identities=16% Similarity=0.225 Sum_probs=65.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhh----
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---- 76 (362)
.+|.+||+|.-| ++..+++..+..+|+++|+|++.++..++.-..... +++ ..++++ ..|..+.+
T Consensus 93 krVLiIGgG~G~--~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~-------dpRv~vi~~Da~~~l~~~~ 162 (308)
T PLN02366 93 KKVLVVGGGDGG--VLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV-GFD-------DPRVNLHIGDGVEFLKNAP 162 (308)
T ss_pred CeEEEEcCCccH--HHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc-ccC-------CCceEEEEChHHHHHhhcc
Confidence 479999999854 456667652125899999999988876552111100 111 123433 23422222
Q ss_pred -cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCC
Q 017997 77 -SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 77 -~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv 129 (362)
...|+||+-.+.|... ...+ +-.+.++.+.+.|+++-+++..++.
T Consensus 163 ~~~yDvIi~D~~dp~~~-------~~~L-~t~ef~~~~~~~L~pgGvlv~q~~s 208 (308)
T PLN02366 163 EGTYDAIIVDSSDPVGP-------AQEL-FEKPFFESVARALRPGGVVCTQAES 208 (308)
T ss_pred CCCCCEEEEcCCCCCCc-------hhhh-hHHHHHHHHHHhcCCCcEEEECcCC
Confidence 2579999977655321 1111 2356778888999999888765543
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.53 E-value=1.1 Score=39.94 Aligned_cols=38 Identities=29% Similarity=0.241 Sum_probs=33.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINA 41 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~ 41 (362)
++|.|.| .|.+|..++..|+++ |++|++++|++++.+.
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~--g~~V~~~~r~~~~~~~ 45 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAAD--GAEVIVVDICGDDAAA 45 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHH
Confidence 4788998 699999999999999 9999999999766544
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.83 Score=41.30 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=34.8
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
+++.|.| .|.+|..++..|+++ |++|++++++++..+.+.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~ 52 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEA--GARVHVCDVSEAALAATA 52 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 4788998 499999999999999 999999999987766554
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=93.47 E-value=3.2 Score=39.58 Aligned_cols=111 Identities=15% Similarity=0.206 Sum_probs=63.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhh----
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---- 76 (362)
.+|.|||+|.-+ ++..+.+..+..+|+++|+|++.++..++- .+.....++ ..+++. ..|...-+
T Consensus 105 k~VLiiGgG~G~--~~re~l~~~~~~~v~~VEiD~~vv~lar~~-~~~~~~~~~-------dprv~v~~~Da~~~L~~~~ 174 (336)
T PLN02823 105 KTVFIMGGGEGS--TAREVLRHKTVEKVVMCDIDQEVVDFCRKH-LTVNREAFC-------DKRLELIINDARAELEKRD 174 (336)
T ss_pred CEEEEECCCchH--HHHHHHhCCCCCeEEEEECCHHHHHHHHHh-ccccccccc-------CCceEEEEChhHHHHhhCC
Confidence 479999999544 455555542245899999999999877653 221111111 123332 22322222
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH-HHHhhcCCCCEEEEeeC
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR-VIADVSKSDKIVVEKST 128 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~-~i~~~l~~~~iVv~~ST 128 (362)
+..|+||+-++.|... + .+.-=+-.+.++ .+.+.|+++.+++..+.
T Consensus 175 ~~yDvIi~D~~dp~~~-~-----~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 175 EKFDVIIGDLADPVEG-G-----PCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred CCccEEEecCCCcccc-C-----cchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 4689999987665421 0 110001245566 67788999888765443
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.87 Score=41.99 Aligned_cols=40 Identities=28% Similarity=0.278 Sum_probs=32.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~-V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|...+..+... |.+ |+++|+++++.+.+++
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAA--GAARVVAADPSPDRRELALS 163 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 688999999998777666555 776 8999999998887665
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.1 Score=40.39 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=33.9
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
+|.|.|. |.+|..++..|++. |++|+++++++++.+.+.
T Consensus 4 ~ilItGat~~iG~~la~~L~~~--g~~v~~~~r~~~~~~~~~ 43 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAA--GDRVLALDIDAAALAAFA 43 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 4778886 89999999999998 999999999988776554
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.4 Score=39.53 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=34.6
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++|.|.| .|.+|..++..|++. |++|++++++++..+.+.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~ 42 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAA--GANVVVNDLGEAGAEAAA 42 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 5688888 699999999999999 999999999987766554
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=1.1 Score=40.39 Aligned_cols=40 Identities=13% Similarity=0.014 Sum_probs=33.9
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
+++.|.|. |.+|..++..|++. |++|++.+++++..+++.
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~ 50 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGL--GADVLIVARDADALAQAR 50 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH
Confidence 35777774 89999999999999 999999999988776554
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.38 E-value=1.1 Score=42.87 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=31.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC---CHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDI---SVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~---~~~~~~~l~~ 44 (362)
+|.|+|+|.+|...+..+... |.+|+++++ ++++.+.+++
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHH
Confidence 689999999999776655555 889999998 6788776654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=1.3 Score=41.30 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=34.6
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++|-|.|. |.+|..+|..|+++ |++|++.++++++.+.+.
T Consensus 41 k~vlItGasggIG~~la~~La~~--G~~Vi~~~R~~~~l~~~~ 81 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARR--GATVVAVARREDLLDAVA 81 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 35778885 99999999999999 999999999988776654
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.29 Score=46.05 Aligned_cols=79 Identities=15% Similarity=0.229 Sum_probs=47.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCC-CCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQL-PIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~-~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
++|.|.| .|++|..++..|++. |++|++..++.+..+.+.+-.. .-..+.+. . ..+.+.-..+..++++++
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~----~~~Dl~~~~~~~~~~~~~ 78 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLR--GYTVKATVRDLTDRKKTEHLLALDGAKERLK-L----FKADLLEESSFEQAIEGC 78 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEECCCcchHHHHHHHhccCCCCceE-E----EecCCCCcchHHHHHhCC
Confidence 5899998 699999999999999 9999988877654332221000 00000000 0 011222223355667789
Q ss_pred cEEEEecc
Q 017997 80 DIVFVSVN 87 (362)
Q Consensus 80 DvVii~vp 87 (362)
|+||-+..
T Consensus 79 d~vih~A~ 86 (322)
T PLN02986 79 DAVFHTAS 86 (322)
T ss_pred CEEEEeCC
Confidence 99988764
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.077 Score=51.78 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=30.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.|.|||.|..|+++|..|++. |++|+++|+.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~--G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGS--GLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcC--CCEEEEEcCCC
Confidence 699999999999999999998 99999999875
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.083 Score=53.64 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=27.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.||+|||+|.-|++.+..|.+. |++|++++++++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~--g~~~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE--GLEVTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT--T-EEEEEESSSS
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCCCeEEecCCC
Confidence 5899999999999999999999 999999998754
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.30 E-value=3.2 Score=37.11 Aligned_cols=189 Identities=17% Similarity=0.170 Sum_probs=90.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|.+++||.|..|......-.+. ++....+ -+++++.+.|.+-. . ...+. .+...+-.+
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~--~~~cs~i~srS~~~a~~LaE~~------~---------a~p~d----~~~~ael~~ 69 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV--VVACSAISSRSRDRAQNLAETY------V---------APPLD----VAKSAELLL 69 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch--heeehhhhhcCHHHHhhchhcc------C---------CCccc----hhhChhhhc
Confidence 5799999999998744333322 3333322 34555555543310 0 01121 222234457
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh-hcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~-~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
++|+.+|.. + ..+..+. ..+++++|+-+|... ..+.+.+ +.+. | -+....+|.|.
T Consensus 70 ~vfv~vpd~----------------~--~s~vaa~~~~rpg~iv~HcSga~--~~~il~~-~gr~--g-~~~asiHP~f~ 125 (289)
T COG5495 70 LVFVDVPDA----------------L--YSGVAATSLNRPGTIVAHCSGAN--GSGILAP-LGRQ--G-CIPASIHPAFS 125 (289)
T ss_pred eEEecchHH----------------H--HHHHHHhcccCCCeEEEEccCCC--chhhhhh-hhhc--C-Ccceeeccccc
Confidence 788777621 1 1112222 246888888887632 1122222 2222 2 12345677666
Q ss_pred ccCccccccC-CCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeC-Chh--HHHHHHHHHhHHHHHHHHHHHHHHH
Q 017997 160 AEGTAIQDLF-NPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT-NLW--SAELSKLAANAFLAQRISSVNAMSA 235 (362)
Q Consensus 160 ~~g~a~~~~~-~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~--~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (362)
-.|... ++. -.+.+ +|.... ++.-...++.+-..++ +.++.+. +.+ ---..-++.|- .+..+.+...
T Consensus 126 Fsgl~e-dl~rl~d~~-~~i~ea--D~~g~ai~q~la~emg-g~~f~V~~~~r~lYHaaa~~asnf----~v~~l~~a~~ 196 (289)
T COG5495 126 FSGLDE-DLSRLKDTI-FGITEA--DDVGYAIVQSLALEMG-GEPFCVREEARILYHAAAVHASNF----IVTVLADALE 196 (289)
T ss_pred ccCCHH-HHHhCcccE-EEeecc--cccccHHHHHHHHHhC-CCceeechhHHHHHHHHHHHhhcc----HHHHHHHHHH
Confidence 555432 222 22233 343211 2344566677777776 3444433 111 11112233333 3466677777
Q ss_pred HHHHhCCCH
Q 017997 236 LCEATGANV 244 (362)
Q Consensus 236 l~~~~g~d~ 244 (362)
+....|.|-
T Consensus 197 i~~aag~Dq 205 (289)
T COG5495 197 IYRAAGDDQ 205 (289)
T ss_pred HHHHhcCCC
Confidence 777777763
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.087 Score=52.58 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=30.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|+|||+|.-|+..|..|.+. |++|++++++.
T Consensus 11 ~~VaIIGAG~aGL~aA~~l~~~--G~~v~vfE~~~ 43 (461)
T PLN02172 11 QHVAVIGAGAAGLVAARELRRE--GHTVVVFEREK 43 (461)
T ss_pred CCEEEECCcHHHHHHHHHHHhc--CCeEEEEecCC
Confidence 5899999999999999999999 99999999764
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.095 Score=51.55 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=30.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
+|.|||.|.+|+..|..|++. |++|++++..+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~--G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA--GVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC--CCcEEEEecccc
Confidence 799999999999999999999 999999996544
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=2.9 Score=38.35 Aligned_cols=103 Identities=19% Similarity=0.146 Sum_probs=61.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhh----
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---- 76 (362)
.+|.+||+|. +.++..+++..|+.+|+++|+|++.++..++.- ..++. ..++++ ..|..+.+
T Consensus 68 ~~vL~IG~G~--G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f---~~~~~--------~~rv~v~~~Da~~~l~~~~ 134 (262)
T PRK04457 68 QHILQIGLGG--GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHF---ELPEN--------GERFEVIEADGAEYIAVHR 134 (262)
T ss_pred CEEEEECCCH--hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHc---CCCCC--------CCceEEEECCHHHHHHhCC
Confidence 3689999994 447777776656789999999999998776521 00110 123332 24443322
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
...|+|++-.-.+.. .+.--...+.++.+.+.|+++-+++.
T Consensus 135 ~~yD~I~~D~~~~~~--------~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 135 HSTDVILVDGFDGEG--------IIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred CCCCEEEEeCCCCCC--------CccccCcHHHHHHHHHhcCCCcEEEE
Confidence 357999885421110 11111125677888888888777644
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.32 Score=38.06 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEEEEeccCCCC
Q 017997 12 VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTK 91 (362)
Q Consensus 12 ~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~vptp~~ 91 (362)
-+..++..|.+. |.+|.+||..-........+. ..+++.++++.++++++|+||++++-+.=
T Consensus 18 p~~~l~~~L~~~--g~~V~~~DP~v~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~D~vvl~t~h~~f 79 (106)
T PF03720_consen 18 PALELIEELKER--GAEVSVYDPYVDEEEIKELGK----------------LEGVEVCDDLEEALKGADAVVLATDHDEF 79 (106)
T ss_dssp HHHHHHHHHHHT--T-EEEEE-TTSHHHHHHHHCH----------------HHCEEEESSHHHHHTTESEEEESS--GGG
T ss_pred HHHHHHHHHHHC--CCEEEEECCccChHHHHhhCC----------------ccceEEecCHHHHhcCCCEEEEEecCHHH
Confidence 356788899998 999999998644433322110 02478888998899999999999763311
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 92 TQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 92 ~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+.. -.+.+...++++.+|++.
T Consensus 80 -------~~l-------~~~~~~~~~~~~~~iiD~ 100 (106)
T PF03720_consen 80 -------REL-------DWEEIAKLMRKPPVIIDG 100 (106)
T ss_dssp -------GCC-------GHHHHHHHSCSSEEEEES
T ss_pred -------hcc-------CHHHHHHhcCCCCEEEEC
Confidence 111 234566666677777763
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.1 Score=50.83 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.+|.|||.|..|+.+|..|++. |++|+++|+.+.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~--G~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLA--GIDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhc--CCCEEEEEcCCc
Confidence 4799999999999999999999 999999998863
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 362 | ||||
| 2q3e_A | 467 | Structure Of Human Udp-Glucose Dehydrogenase Comple | 1e-144 | ||
| 3prj_A | 494 | Role Of Packing Defects In The Evolution Of Alloste | 1e-144 | ||
| 3tdk_A | 487 | Crystal Structure Of Human Udp-Glucose Dehydrogenas | 1e-144 | ||
| 3khu_A | 467 | Crystal Structure Of Human Udp-Glucose Dehydrogenas | 1e-144 | ||
| 4edf_A | 494 | Dimeric Hugdh, K94e Length = 494 | 1e-144 | ||
| 3itk_A | 467 | Crystal Structure Of Human Udp-Glucose Dehydrogenas | 1e-144 | ||
| 3tf5_A | 493 | Structure Of Udp-Glucose Dehydrogenase V132 Deletio | 1e-142 | ||
| 2o3j_A | 481 | Structure Of Caenorhabditis Elegans Udp-Glucose Deh | 1e-134 | ||
| 3gg2_A | 450 | Crystal Structure Of Udp-Glucose 6-Dehydrogenase Fr | 8e-57 | ||
| 2y0e_A | 478 | Bcec And The Final Step Of Ugds Reaction Length = 4 | 9e-57 | ||
| 4a7p_A | 446 | Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase | 2e-56 | ||
| 2y0d_A | 478 | Bcec Mutation Y10k Length = 478 | 1e-55 | ||
| 2y0c_A | 478 | Bcec Mutation Y10s Length = 478 | 1e-55 | ||
| 3vtf_A | 444 | Structure Of A Udp-Glucose Dehydrogenase From The H | 5e-46 | ||
| 1mv8_A | 436 | 1.55 A Crystal Structure Of A Ternary Complex Of Gd | 1e-28 | ||
| 1mfz_A | 436 | Partially Refined 2.8 A Crystal Structure Of Gdp-Ma | 3e-27 | ||
| 3g79_A | 478 | Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuro | 1e-22 | ||
| 3phl_A | 424 | The Apo-Form Udp-Glucose 6-Dehydrogenase Length = 4 | 2e-22 | ||
| 3pid_A | 432 | The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-T | 2e-22 | ||
| 3ojl_A | 431 | Native Structure Of The Udp-N-Acetyl-Mannosamine De | 1e-18 | ||
| 1dli_A | 402 | The First Structure Of Udp-Glucose Dehydrogenase (U | 2e-16 | ||
| 1dlj_A | 402 | The First Structure Of Udp-Glucose Dehydrogenase (U | 3e-15 |
| >pdb|2Q3E|A Chain A, Structure Of Human Udp-Glucose Dehydrogenase Complexed With Nadh And Udp-Glucose Length = 467 | Back alignment and structure |
|
| >pdb|3PRJ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And Induced Fit In Human Udp-Glucose Dehydrogenase. Length = 494 | Back alignment and structure |
|
| >pdb|3TDK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase Length = 487 | Back alignment and structure |
|
| >pdb|3KHU|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase Glu161gln, In Complex With Thiohemiacetal Intermediate Length = 467 | Back alignment and structure |
|
| >pdb|4EDF|A Chain A, Dimeric Hugdh, K94e Length = 494 | Back alignment and structure |
|
| >pdb|3ITK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase Thr131ala, Apo Form. Length = 467 | Back alignment and structure |
|
| >pdb|3TF5|A Chain A, Structure Of Udp-Glucose Dehydrogenase V132 Deletion Length = 493 | Back alignment and structure |
|
| >pdb|2O3J|A Chain A, Structure Of Caenorhabditis Elegans Udp-Glucose Dehydrogenase Length = 481 | Back alignment and structure |
|
| >pdb|3GG2|A Chain A, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From Porphyromonas Gingivalis Bound To Product Udp-Glucuronate Length = 450 | Back alignment and structure |
|
| >pdb|2Y0E|A Chain A, Bcec And The Final Step Of Ugds Reaction Length = 478 | Back alignment and structure |
|
| >pdb|4A7P|A Chain A, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From Sphingomonas Elodea Length = 446 | Back alignment and structure |
|
| >pdb|2Y0D|A Chain A, Bcec Mutation Y10k Length = 478 | Back alignment and structure |
|
| >pdb|2Y0C|A Chain A, Bcec Mutation Y10s Length = 478 | Back alignment and structure |
|
| >pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The Hyperthermophilic Archaeon Pyrobaculum Islandicum Length = 444 | Back alignment and structure |
|
| >pdb|1MV8|A Chain A, 1.55 A Crystal Structure Of A Ternary Complex Of Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa Length = 436 | Back alignment and structure |
|
| >pdb|1MFZ|A Chain A, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose Dehydrogenase From P. Aeruginosa Length = 436 | Back alignment and structure |
|
| >pdb|3G79|A Chain A, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic Acid Dehydrogenase From Methanosarcina Mazei Go1 Length = 478 | Back alignment and structure |
|
| >pdb|3PHL|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase Length = 424 | Back alignment and structure |
|
| >pdb|3PID|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-Terminal Six- Histidine Tag Length = 432 | Back alignment and structure |
|
| >pdb|3OJL|A Chain A, Native Structure Of The Udp-N-Acetyl-Mannosamine Dehydrogenase Cap5o From Staphylococcus Aureus Length = 431 | Back alignment and structure |
|
| >pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh) Reveals The Catalytic Residues Necessary For The Two-Fold Oxidation Length = 402 | Back alignment and structure |
|
| >pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh) Reveals The Catalytic Residues Necessary For The Two-Fold Oxidation Length = 402 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 362 | |||
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 0.0 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 0.0 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 1e-125 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 1e-123 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 1e-112 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 3e-94 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 9e-94 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 5e-81 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 2e-45 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 3e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-07 |
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A Length = 467 | Back alignment and structure |
|---|
Score = 640 bits (1652), Expect = 0.0
Identities = 242/349 (69%), Positives = 288/349 (82%), Gaps = 1/349 (0%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
+ KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+
Sbjct: 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVES 64
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S
Sbjct: 65 CRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGY 124
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGR 179
KIV EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG
Sbjct: 125 KIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGD 184
Query: 180 ETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239
ETPEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEA
Sbjct: 185 ETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEA 244
Query: 240 TGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQV 299
TGA+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QV
Sbjct: 245 TGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQV 304
Query: 300 IKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
I +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 305 IDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIY 353
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} Length = 481 | Back alignment and structure |
|---|
Score = 640 bits (1653), Expect = 0.0
Identities = 223/351 (63%), Positives = 281/351 (80%), Gaps = 3/351 (0%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
+ K+ C+GAGYVGGPT A+IA KCP I V VVD++ ++I WNSD+LPIYEPGLD +V
Sbjct: 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFA 68
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
RG+NLFFS+D+ K ++EAD++F+SVNTPTK G G G A DL Y ES +R IA +
Sbjct: 69 ARGRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGP 128
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSK---GIKFQILSNPEFLAEGTAIQDLFNPDRVLIG 177
KIVVEKSTVPVK AE+I IL K +KFQ+LSNPEFLAEGTA++DL NPDRVLIG
Sbjct: 129 KIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIG 188
Query: 178 GRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237
G +PEG +AV L +Y +WVP +RI+TTN WS+ELSKL ANAFLAQRISS+N++SA+C
Sbjct: 189 GESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVC 248
Query: 238 EATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWK 297
EATGA +S+VA AVG D+RIG KFL ASVGFGGSCFQKD+L+LVY+CE LP+VA+YW+
Sbjct: 249 EATGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQ 308
Query: 298 QVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
VI IN++Q+ RF ++++A +FNTV++KKIA+ GFAFKK+TGDTRE+ AI
Sbjct: 309 GVININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIH 359
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* Length = 478 | Back alignment and structure |
|---|
Score = 366 bits (942), Expect = e-125
Identities = 129/354 (36%), Positives = 195/354 (55%), Gaps = 19/354 (5%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
+ IG+G VG T A +A I +V +D+ ++I+ N+ +PI+EPGL V+ +
Sbjct: 10 NLTIIGSGSVGLVTGACLA----DIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIAR 65
Query: 61 -CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKS 119
L FSTD+E V+ D+ F++V TP G +ADL Y +AAR I
Sbjct: 66 NRSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTG 120
Query: 120 DKIVVEKSTVPVKTAEAIEKI----LTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVL 175
K++V+KSTVPV TAE + L F ++SNPEFL EG A+ D PDR++
Sbjct: 121 FKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIV 180
Query: 176 IGGRETPEGQKAVKALKDVYAHWV-PEDRILTTNLWSAELSKLAANAFLAQRISSVNAMS 234
IG + G++A + +K +YA + +R L ++ SAE +K AANA LA RIS +N ++
Sbjct: 181 IGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELA 240
Query: 235 ALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAE 294
L + GA++ V +G+D RIG FL A G+GGSCF KD+ L+ + +G +
Sbjct: 241 NLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHGQS--LQ 298
Query: 295 YWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
K V +N QK +++VA ++ + A+ G AFK +T D RE P+ +
Sbjct: 299 ILKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRE 352
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} Length = 450 | Back alignment and structure |
|---|
Score = 362 bits (931), Expect = e-123
Identities = 132/354 (37%), Positives = 190/354 (53%), Gaps = 23/354 (6%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
I +G GYVG + A + V +D ++I NS +PIYEPGL+ ++ +
Sbjct: 4 DIAVVGIGYVGLVSATCFA----ELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIAR 59
Query: 61 -CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKS 119
+ L F T++E+ V EADI+F++V TP G +AD++Y AAR I
Sbjct: 60 NVKAGRLRFGTEIEQAVPEADIIFIAVGTPAGEDG-----SADMSYVLDAARSIGRAMSR 114
Query: 120 DKIVVEKSTVPVKTAEAIEKI----LTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVL 175
++V KSTVPV + I K L I F I SNPEFL EG AI D PDRV+
Sbjct: 115 YILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLKEGNAIDDFMKPDRVV 174
Query: 176 IGGRETPEGQKAVKALKDVYAHWV-PEDRILTTNLWSAELSKLAANAFLAQRISSVNAMS 234
+G + +A + + +Y + R+L ++ SAE++K AANA LA RIS +N ++
Sbjct: 175 VGV----DSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVA 230
Query: 235 ALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAE 294
LCE GA+VS V +G+DSRIG KFL G+GGSCF KD+ L+ E NG E
Sbjct: 231 NLCERVGADVSMVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYR--ME 288
Query: 295 YWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
+ V ++N+ QKS ++ V + +A+ G +FK T D RE P++
Sbjct: 289 VLEAVERVNEKQKSILFDKFSTYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLV 342
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* Length = 436 | Back alignment and structure |
|---|
Score = 332 bits (854), Expect = e-112
Identities = 93/358 (25%), Positives = 164/358 (45%), Gaps = 34/358 (9%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
+I G GYVG ++ + EV VD+S ++I+ N + PI EPGL+ +++Q
Sbjct: 2 RISIFGLGYVGAVCAGCLS----ARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQ 57
Query: 61 -CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKS 119
+ L +TD +K V ++D+ F+ V TP+K G DL Y E+ R I +
Sbjct: 58 GRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIRE 112
Query: 120 D---KIVVEKSTVPVKTAE----AIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPD 172
VV +STV T + + + G+ F + +NPEFL E TAI+D P
Sbjct: 113 KSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPP 172
Query: 173 RVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNA 232
+IG ++ L+++Y + I+ + AE+ K N + A +++ N
Sbjct: 173 MTVIGE----LDKQTGDLLEEIYREL--DAPIIRKTVEVAEMIKYTCNVWHAAKVTFANE 226
Query: 233 MSALCEATGANVSQVAFAVGTDSRIG--PKFLNASVGFGGSCFQKDILNLVYICECNGLP 290
+ + +A G + +V + D ++ ++ FGGSC KD+ L Y +
Sbjct: 227 IGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVE 286
Query: 291 EVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
+++ N Q + + + + +K+ +LG +FK T D RE+P ++
Sbjct: 287 --HPMLGSLMRSNSNQVQKAFDLI-----TSHDTRKVGLLGLSFKAGTDDLRESPLVE 337
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* Length = 432 | Back alignment and structure |
|---|
Score = 287 bits (736), Expect = 3e-94
Identities = 84/349 (24%), Positives = 147/349 (42%), Gaps = 29/349 (8%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
+KI G GYVG +IA EV +DI ++++ N PI + + + +
Sbjct: 36 FMKITISGTGYVGLSNGVLIAQN---HEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE 92
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
+ N +TD AD V ++ T + + E+ R + +++ +
Sbjct: 93 -KPLNFRATTDKHDAYRNADYVIIATPTDYD----PKTNYFNTSTVEAVIRDVTEINP-N 146
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
+++ KST+PV I++ L ++ +PEFL EG A+ D +P R++IG
Sbjct: 147 AVMIIKSTIPVGFTRDIKERLG------IDNVIFSPEFLREGRALYDNLHPSRIVIGE-- 198
Query: 181 TPEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239
+A + + + +D L T+ AE KL AN +LA R++ N + + E+
Sbjct: 199 --RSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAES 256
Query: 240 TGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQV 299
G N Q+ V D RIG + N S G+GG C KD L+ E + +
Sbjct: 257 QGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYESVPNNII----AAI 312
Query: 300 IKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
+ N +K + ++A K + V K + + R +
Sbjct: 313 VDANRTRKDFIADSILA-----RKPKVVGVYRLIMKSGSDNFRASSIQG 356
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* Length = 402 | Back alignment and structure |
|---|
Score = 284 bits (730), Expect = 9e-94
Identities = 79/351 (22%), Positives = 150/351 (42%), Gaps = 24/351 (6%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KI G+GYVG +++L+ EV +VDI S+++ N+ PI + ++ +K +
Sbjct: 2 KIAVAGSGYVGLSLGVLLSLQ---NEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQ 58
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
++ + D + EA++V ++ T D + E+ + + V+
Sbjct: 59 L-SIKATLDSKAAYKEAELVIIATPTNYN----SRINYFDTQHVETVIKEVLSVNS-HAT 112
Query: 123 VVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGG---R 179
++ KST+P+ + + +I+ +PEFL E A+ D P R+++
Sbjct: 113 LIIKSTIPIGFITEMRQKFQ------TDRIIFSPEFLRESKALYDNLYPSRIIVSCEEND 166
Query: 180 ETPEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238
A K + + + +L AE KL AN +LA R++ N + E
Sbjct: 167 SPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAE 226
Query: 239 ATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQ 298
+ N + + D RIG + N S G+GG KD L + N +P+ +
Sbjct: 227 SRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQL--LANYNNIPQ--TLIEA 282
Query: 299 VIKINDYQKSRFVNRVVASMFNTVSN-KKIAVLGFAFKKDTGDTRETPAID 348
++ N+ +KS +++ + S K + V K ++ + RE+ D
Sbjct: 283 IVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKD 333
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} Length = 478 | Back alignment and structure |
|---|
Score = 254 bits (651), Expect = 5e-81
Identities = 93/369 (25%), Positives = 156/369 (42%), Gaps = 30/369 (8%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI----SVSRINAWNSDQLPIY--EPGL 54
+ KI +G GYVG P + A +V S +I N + P+ EPGL
Sbjct: 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGL 77
Query: 55 DGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVI 113
+ ++ + + + D + +SE D V +++ TP D + R +
Sbjct: 78 EELIGKVVKAGKFECTPDFSR-ISELDAVTLAIQTPFANPKDLE---PDFSALIDGIRNV 133
Query: 114 ADVSKSDKIVVEKSTVPVKTAEAIEK-ILTHNSK---GIKFQILSNPEFLAEGTAIQDLF 169
K +VV +ST+ T E + K IL S G F + PE + G ++++
Sbjct: 134 GKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFALAHAPERVMVGRLLKNIR 193
Query: 170 NPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISS 229
DR+ +GG K L Y+ + +++ + +AE++K A N F +I++
Sbjct: 194 EHDRI-VGG-IDEASTKRAVEL---YSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAA 248
Query: 230 VNAMSALCEATGANVSQVAFAVGT--DSRIGPKFLNASVGFGGSCFQKDILNLVYICECN 287
+N ++ CEA G NV V V + I L G GG C KD +L +
Sbjct: 249 INQLALYCEAMGINVYDVRTGVDSLKGEGITRAVLWPGAGVGGHCLTKDTYHLERGVKIG 308
Query: 288 GLP-EVAEYWKQVIK----INDYQKSRFVNRVVASMFN---TVSNKKIAVLGFAFKKDTG 339
+ E + +ND+ + N VA++ + K+A+LG+AF KD+
Sbjct: 309 RGELDYPEGADSIYVLARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSD 368
Query: 340 DTRETPAID 348
D R TP+
Sbjct: 369 DARNTPSEP 377
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* Length = 431 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 2e-45
Identities = 89/359 (24%), Positives = 151/359 (42%), Gaps = 45/359 (12%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
K+ +G GY+G PT + A ++V VDI+ I+ + Q+ I EPGL V ++
Sbjct: 13 KLTVVGLGYIGLPTSIMFAKHG--VDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVL 70
Query: 63 GK-NLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
L ST E +D+ ++V TP ++ D++ A I K
Sbjct: 71 SSGKLKVSTTPE----ASDVFIIAVPTPNND---DQYRSCDISLVMRALDSILPFLKKGN 123
Query: 122 IVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGG 178
++ +ST+ KT + K + N G ++ PE + G +++L + +R+ IGG
Sbjct: 124 TIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRI-IGG 182
Query: 179 RETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238
T +A K + Y +V + ++ T+ +AE+SKL N + I+ N ++ +C
Sbjct: 183 -VTKACIEAGKRV---YRTFV-QGEMIETDARTAEMSKLMENTYRDVNIALANELTKICN 237
Query: 239 ATGANVSQVAFAVGTDSRI-----GPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVA 293
NV V R+ GP G GG C D ++
Sbjct: 238 NLNINVLDVIEMANKHPRVNIHQPGP-------GVGGHCLAVDPYFIIAK---------D 281
Query: 294 EYWKQVIK----INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
++I+ IN+ +V + +S K+ V G +K D D RE+PA D
Sbjct: 282 PENAKLIQTGREINNS-MPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFD 339
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 3e-14
Identities = 35/223 (15%), Positives = 72/223 (32%), Gaps = 33/223 (14%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN----SDQLPIYEPGLDGVV 58
K+C G G G T++ +A +EV V+ + W +D+L + DG
Sbjct: 4 KVCVCGGGN-GAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQ 62
Query: 59 KQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSK 118
+ + + + D E +S AD+V ++V E + +A +
Sbjct: 63 TEVKSRPKVITKDPEIAISGADVVILTVPA---------------FAHEGYFQAMAPYVQ 107
Query: 119 SDKIVVEKSTVPVKT--AEAIEKILTHNSKGIKFQILSNPEFLAE----GTAIQDLFNPD 172
++V +P + IL + + + G ++ L
Sbjct: 108 DSALIV---GLPSQAGFEFQCRDILGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKS 164
Query: 173 RVLI----GGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS 211
+ G +T + ++ L + L + S
Sbjct: 165 VLAASLIKGTAKTVDPLSTLQMLHGAEPVFRLAKHFLEMLIMS 207
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 5e-07
Identities = 60/415 (14%), Positives = 115/415 (27%), Gaps = 144/415 (34%)
Query: 32 VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEADIVFVSVNTPT 90
+D D L ++E V K++ D+ K + S+ +I + + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAF---VDNFDCKDV---QDMPKSILSKEEIDHI-IMSKD 59
Query: 91 KTQGLGAGKAADLTYW-------ESAARVIADVSKSD------KIVVE---KSTVPVKTA 134
G +W E + + +V + + I E S +
Sbjct: 60 AVSGT------LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 135 EAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLI---GGRETPEGQK---AV 188
E +++ N K+ + +L A+ +L VLI G G K A+
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG----SG-KTWVAL 168
Query: 189 KALKD----------VYAHWV-------PEDRI-------------------------LT 206
++ W+ PE + L
Sbjct: 169 DVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 207 TNLWSAELSKLAA-----NAFL----AQRISSVNAMSALCE--ATGANVSQVAFAVGTDS 255
+ AEL +L N L Q + NA + C+ T V + +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAAT 285
Query: 256 RIGPKFLNASVGFGGSCFQKDILNLV--YI-CECNGLPEVA------------------- 293
+ S+ ++ +L+ Y+ C LP
Sbjct: 286 TTHISLDHHSMTLT----PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 294 ---EYWKQVIKINDYQKSRFVNRVVASMFNTVSN-------KKIAVLGFAFKKDT 338
+ WK V + K + ++ S N + +++V F
Sbjct: 342 ATWDNWKHV----NCDK---LTTIIESSLNVLEPAEYRKMFDRLSV----FPPSA 385
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 362 | |||
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 100.0 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 100.0 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 100.0 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 100.0 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 100.0 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 100.0 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 100.0 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 100.0 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 100.0 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 100.0 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 100.0 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 100.0 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 100.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 100.0 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 100.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.98 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.97 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.96 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.95 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.95 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.95 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.95 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.94 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.94 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.94 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.93 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.93 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.93 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.9 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.9 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.9 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.9 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.89 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.89 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.89 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.89 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.89 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.88 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.88 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.88 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.81 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.81 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.8 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.8 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.79 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.78 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.78 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.78 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.77 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.77 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.77 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.77 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.76 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.76 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.74 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.74 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.73 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.73 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.73 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.71 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.7 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.7 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.69 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.69 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.68 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.68 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.67 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.65 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.64 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.64 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.63 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.61 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.6 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.59 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.58 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.57 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.57 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.55 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.47 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.41 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.39 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.37 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.36 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.34 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.29 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.29 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.9 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 99.24 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.24 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 99.19 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 99.15 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.15 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 99.13 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.13 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.12 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 99.11 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.08 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.08 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 99.08 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.07 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.05 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.05 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.05 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.03 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 99.02 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 99.02 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.01 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.99 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.98 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 98.97 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.97 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 98.97 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 98.96 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.95 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.95 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.95 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.95 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.94 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.94 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 98.94 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 98.93 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 98.93 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.93 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.92 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.92 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.91 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.89 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.87 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.85 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.84 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.84 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 98.84 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.8 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.77 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.76 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.76 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.73 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.73 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.73 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.71 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.69 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.67 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.67 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.66 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.65 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.64 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.64 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.63 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 98.63 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.61 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.6 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.59 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.59 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.58 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.57 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 98.57 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.57 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.56 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.54 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.54 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.52 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.52 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.52 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 98.51 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.51 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.51 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.5 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.49 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 98.48 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.48 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.47 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.46 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.45 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.44 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.42 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.41 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.41 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.4 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.39 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.39 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.36 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.36 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.33 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.33 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.32 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.31 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.31 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.3 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.3 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.29 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.29 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.28 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.28 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.26 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.26 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.26 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.26 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.26 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.25 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.25 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.24 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.24 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.23 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.21 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.19 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.19 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.16 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 98.14 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.14 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.13 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.12 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.09 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.09 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.08 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 98.04 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.03 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 98.02 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 98.02 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.01 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.99 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.99 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.99 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 97.97 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.97 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.96 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.96 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 97.94 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.91 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.91 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.88 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.87 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.87 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.86 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.86 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.86 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.85 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.84 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.84 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.82 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.81 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.81 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.8 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 97.79 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.79 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 97.78 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 97.77 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 97.77 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.76 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.76 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.75 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.75 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.75 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.73 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.72 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.7 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.66 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.64 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.63 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.63 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.59 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.58 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.57 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.55 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 97.53 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.51 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 97.51 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.5 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.5 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.49 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 97.48 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.47 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.46 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.46 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.45 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.45 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 97.44 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.44 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.44 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.43 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.42 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.39 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 97.39 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.38 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.38 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.33 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 97.33 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.3 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.29 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.27 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.26 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.2 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 97.2 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.19 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.16 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.12 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.12 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.1 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 97.07 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.07 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.05 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 97.04 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 97.03 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 96.98 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.98 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 96.96 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.94 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.9 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.83 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 96.83 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.8 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.79 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 96.79 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 96.77 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.75 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 96.71 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.71 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.7 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.68 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.66 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 96.66 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.63 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 96.62 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 96.62 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 96.58 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.58 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 96.57 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.56 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.53 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 96.53 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.5 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 96.5 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.48 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 96.45 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.43 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 96.42 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 96.38 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 96.38 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 96.35 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.34 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.34 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.33 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.32 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.31 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.29 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.29 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 96.25 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.23 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 96.17 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 96.17 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 96.16 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 96.14 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 96.13 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 96.11 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 96.02 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 95.99 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 95.99 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 95.97 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 95.96 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 95.96 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 95.96 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.95 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.94 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 95.89 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 95.87 | |
| 3h2z_A | 382 | Mannitol-1-phosphate 5-dehydrogenase; PSI- protein | 95.86 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 95.85 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 95.78 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 95.75 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 95.73 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 95.72 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 95.72 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 95.72 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 95.7 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 95.7 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 95.69 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 95.68 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 95.65 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 95.63 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 95.61 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 95.61 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.57 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 95.56 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 95.55 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 95.51 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 95.47 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 95.47 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 95.47 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.43 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 95.42 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 95.38 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 95.36 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 95.25 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 95.24 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 95.24 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 95.23 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 95.22 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 95.19 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.18 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 95.14 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 95.11 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 95.08 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 95.07 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 95.07 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 95.04 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 95.03 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.02 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.01 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 94.98 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 94.96 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 94.94 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 94.93 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 94.93 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 94.91 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.9 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 94.89 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 94.83 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.82 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.8 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 94.76 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 94.74 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.73 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 94.73 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 94.71 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 94.64 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.64 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 94.57 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 94.56 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 94.54 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 94.51 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 94.49 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 94.49 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.45 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 94.44 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 94.43 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 94.42 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 94.4 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 94.37 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 94.37 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 94.33 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 94.33 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 94.29 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 94.29 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 94.28 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.27 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 94.26 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 94.26 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 94.24 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 94.23 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 94.21 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 94.21 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.21 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.2 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 94.2 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 94.19 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 94.19 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 94.18 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 94.18 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 94.16 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.14 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.13 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 94.12 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 94.08 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 94.07 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 94.06 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 94.02 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 94.02 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.02 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 93.99 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 93.98 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 93.97 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 93.97 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 93.97 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 93.92 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 93.92 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.91 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 93.9 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 93.89 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.84 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 93.84 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 93.84 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 93.83 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 93.82 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 93.81 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 93.79 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 93.79 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 93.78 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 93.73 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 93.72 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 93.69 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 93.69 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 93.67 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 93.65 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 93.65 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 93.65 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 93.64 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 93.63 |
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-85 Score=631.19 Aligned_cols=342 Identities=35% Similarity=0.558 Sum_probs=320.3
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (362)
|.+|+|||+||||+++|.+|++. ||+|+|+|+|+++++.|++|+.|++||++++++++ ...+++++|+|++++++++
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~--G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~a 98 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALL--GHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAAT 98 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTS
T ss_pred CCEEEEEccCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcC
Confidence 56899999999999999999999 99999999999999999999999999999999876 5678999999999999999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcC---CCCEEEEeeCCccccHHHH-HHHHHhccCCCceEEeeC
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSK---SDKIVVEKSTVPVKTAEAI-EKILTHNSKGIKFQILSN 155 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~---~~~iVv~~STv~~gt~~~l-~~~l~~~~~g~~~~v~~~ 155 (362)
|++|||||||.+.++ .+|+++++++.+.|+++++ ++++||++||+||||++++ .+.+++.+.+.+|+++|+
T Consensus 99 d~~~I~VpTP~~~d~-----~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~ 173 (444)
T 3vtf_A 99 DATFIAVGTPPAPDG-----SADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASN 173 (444)
T ss_dssp SEEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEEC
T ss_pred CceEEEecCCCCCCC-----CCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecC
Confidence 999999999998865 9999999999999999885 5789999999999999875 566766655789999999
Q ss_pred CcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 017997 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (362)
Q Consensus 156 Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (362)
|||+.||++++++.+|+|||+|+.+ +++.+.++++|+.+. .++.++++++||++||++|+||+++|||+||++.
T Consensus 174 PErl~eG~a~~d~~~~~riViG~~~----~~a~~~~~~ly~~~~--~~~~~~~~~~AE~~Kl~eN~~ravnIa~~NEla~ 247 (444)
T 3vtf_A 174 PEFLREGSALEDFFKPDRIVIGAGD----ERAASFLLDVYKAVD--APKLVMKPREAELVKYASNVFLALKISFANEVGL 247 (444)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEESS----HHHHHHHHHHTTTSC--SCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCccccccccCCcEEEcCCC----HHHHHHHHHHHhccC--CCEEEechhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999873 788899999999875 4677899999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHH
Q 017997 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVV 315 (362)
Q Consensus 236 l~~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~ 315 (362)
+|+++|+|+++|++++++|+|+|++|++||+||||||||||+++|.+.|++.|++ .+++++++++|+.||+++++++.
T Consensus 248 ice~~GiDv~eV~~a~~~d~rig~~~l~PG~G~GG~CipkD~~~L~~~a~~~g~~--~~li~a~~~iN~~~~~~vv~~l~ 325 (444)
T 3vtf_A 248 LAKRLGVDTYRVFEAVGLDKRIGRHYFGAGLGFGGSCFPKDTLAFIRFGESLGLE--MAISKAVLRVNEYMPRYAVQLLE 325 (444)
T ss_dssp HHHHTTCCHHHHHHHHHTSTTSCSTTCCCSSCCCTTTHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhccCCCCCCCCCCCCCCCCCcccCcCHHHHHHHHHhcCCC--HHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 89999999999999999999987
Q ss_pred HHhcCCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 316 ASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 316 ~~~~~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
+.+ +.++++||+|||+||||||+|+||||++.|++.|.++|.
T Consensus 326 ~~~-~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga 367 (444)
T 3vtf_A 326 ERL-GGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGA 367 (444)
T ss_dssp HHH-TCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTC
T ss_pred HHc-cccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCC
Confidence 765 678999999999999999999999999999999999985
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-78 Score=587.23 Aligned_cols=344 Identities=38% Similarity=0.623 Sum_probs=318.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|||+||||+++|.+|+++ ||+|++||+++++++.++++..|++||++++++++ ...+++++|+|+++++++||
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~--G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aD 86 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDF--GHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDAD 86 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCS
T ss_pred eEEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCC
Confidence 4799999999999999999999 99999999999999999999999999999998765 34678999999998899999
Q ss_pred EEEEeccCCCCC-CCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 81 IVFVSVNTPTKT-QGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 81 vVii~vptp~~~-~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
+||+|||||.+. ++ .+|++++++++++|.++++++++||++||++|||++++.+.+++...+.+|.++++|||+
T Consensus 87 vvii~Vptp~~~~~~-----~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~~d~~v~~~Pe~a 161 (446)
T 4a7p_A 87 AVFIAVGTPSRRGDG-----HADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPNSGAKVVSNPEFL 161 (446)
T ss_dssp EEEECCCCCBCTTTC-----CBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTTSCCEEEECCCCC
T ss_pred EEEEEcCCCCccccC-----CccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCCCCceEEeCcccc
Confidence 999999999864 44 899999999999999999999999999999999999998888776444678999999999
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCC--cEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED--RILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
.||.+++++.+|++|++|+.+ +++.++++++|+.++... +++.+++++||++|+++|++++++++++||++.+|
T Consensus 162 ~eG~a~~d~~~p~~ivvG~~~----~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~ 237 (446)
T 4a7p_A 162 REGAAIEDFKRPDRVVVGTED----EFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLC 237 (446)
T ss_dssp CTTSHHHHHHSCSCEEEECSC----HHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCCCEEEEeCCc----HHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999863 788999999999986422 57789999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 017997 238 EATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVAS 317 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 317 (362)
+++|+|+++|+++++++||+|+++++||+||||+|+|||+++|++.|++.|++ .+++++++++|++||+++++++.+.
T Consensus 238 ~~~GiD~~~v~~~~~~~~rig~~~l~pg~G~gg~c~~KD~~~l~~~A~~~g~~--~~l~~~~~~iN~~~~~~~~~~i~~~ 315 (446)
T 4a7p_A 238 EQVGADVQEVSRGIGMDNRIGGKFLHAGPGYGGSCFPKDTLALMKTAADNETP--LRIVEATVQVNDARKRAMGRKVIKA 315 (446)
T ss_dssp HHTTCCHHHHHHHHHTSTTC---CCCCCSCCCTTTHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHhcCCCCCCccCCCCCCcchhhHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred hcCCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 318 ~~~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
+++.++++||+|||+||||||||+||||++.|++.|+++|.
T Consensus 316 l~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~ 356 (446)
T 4a7p_A 316 MGGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGA 356 (446)
T ss_dssp TTSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSC
T ss_pred hcccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCC
Confidence 98889999999999999999999999999999999999874
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-76 Score=571.34 Aligned_cols=334 Identities=25% Similarity=0.387 Sum_probs=296.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (362)
.|..|||+||||+++|.+|+++ ||+|++||+|+++++.|++++.|++||++++++++ ...+++++|+|+ ++||
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~--G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~----~~aD 85 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKH--GVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTP----EASD 85 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSC----CCCS
T ss_pred CccEEEeeCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCch----hhCC
Confidence 3789999999999999999999 99999999999999999999999999999998765 346889999984 5799
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHH-HHhccC--CCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKI-LTHNSK--GIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~-l~~~~~--g~~~~v~~~Pe 157 (362)
+||+|||||.+.+. .+.+|+++++++.++|.++++++++||++||++|||++++.+. +++.+. +.+|.++++||
T Consensus 86 vvii~VpTp~~~~~---~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe 162 (431)
T 3ojo_A 86 VFIIAVPTPNNDDQ---YRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPE 162 (431)
T ss_dssp EEEECCCCCBCSSS---SCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCC
T ss_pred EEEEEeCCCccccc---cCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCC
Confidence 99999999987540 1389999999999999999999999999999999999998654 443321 56799999999
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
|+.||.+.+++.+|++||+|++ +++.++++++|+.+.. .+++.+++++||++|+++|+|++++|+++||++.+|
T Consensus 163 ~~~~G~A~~~~~~p~~Iv~G~~-----~~~~~~~~~ly~~~~~-~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~ 236 (431)
T 3ojo_A 163 RVLPGKILEELVHNNRIIGGVT-----KACIEAGKRVYRTFVQ-GEMIETDARTAEMSKLMENTYRDVNIALANELTKIC 236 (431)
T ss_dssp CCCTTSHHHHHHHSCEEEEESS-----HHHHHHHHHHHTTTCC-SCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchhhcccCCCEEEEeCC-----HHHHHHHHHHHHHHhC-CcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987754 7899999999999874 467789999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 017997 238 EATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVAS 317 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 317 (362)
+++|+|+++|++++++|||+ ++++||+||||||||||+++|.+.|++.| +++++++++|+.||.++++++.+.
T Consensus 237 e~~GiD~~~v~~~~~~~~ri--~~l~pG~G~GG~C~pkD~~~L~~~a~~~~-----~li~~~~~iN~~~~~~v~~~~~~~ 309 (431)
T 3ojo_A 237 NNLNINVLDVIEMANKHPRV--NIHQPGPGVGGHCLAVDPYFIIAKDPENA-----KLIQTGREINNSMPAYVVDTTKQI 309 (431)
T ss_dssp HHTTCCHHHHHHHHTTSTTC--CCCCCCSCCCCCCBCSCC---------CC-----HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHccCCCc--ccCCCCCCccccchhhhHHHHHHHHHHHh-----HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999987 68999999999999999999999999875 799999999999999999999888
Q ss_pred hcCCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhc-cC
Q 017997 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASE-RG 358 (362)
Q Consensus 318 ~~~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~-~~ 358 (362)
+ +.++++||+|||+||||||||+||||+++|++.|+++ |.
T Consensus 310 l-~~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~ 350 (431)
T 3ojo_A 310 I-KALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDI 350 (431)
T ss_dssp H-HHSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTC
T ss_pred h-hhcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCC
Confidence 7 5689999999999999999999999999999999999 53
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-74 Score=565.19 Aligned_cols=344 Identities=38% Similarity=0.610 Sum_probs=320.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|+||+++|..|+++ ||+|++||+++++++.++++..+++|+++++++.+ ...+++++++|+++++++||
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~--G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aD 80 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL--GANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEAD 80 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCS
T ss_pred CEEEEECcCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCC
Confidence 7999999999999999999999 99999999999999999999999999999987654 23578999999999899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC----CCceEEeeCC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK----GIKFQILSNP 156 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~----g~~~~v~~~P 156 (362)
+||+|||+|.+.++ .+|++++.+++++|.++++++++||++||++|+|++++.+.+++... +.+|.++++|
T Consensus 81 vViiaVptp~~~~~-----~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~P 155 (450)
T 3gg2_A 81 IIFIAVGTPAGEDG-----SADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNP 155 (450)
T ss_dssp EEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECC
T ss_pred EEEEEcCCCcccCC-----CcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEech
Confidence 99999999987654 89999999999999999999999999999999999999887766421 3678999999
Q ss_pred cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC-CcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 017997 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-DRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (362)
||+.+|.+.+++.+|+++++|+.+ +++.++++++|+.++.. .+++.+|++++|++|+++|++++++++++||+..
T Consensus 156 e~a~eG~~~~~~~~p~~ivvG~~~----~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~ 231 (450)
T 3gg2_A 156 EFLKEGNAIDDFMKPDRVVVGVDS----DRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVAN 231 (450)
T ss_dssp CCCCTTSHHHHHHSCSCEEEEESS----HHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccchhhhccCCCEEEEEcCC----HHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999873 78999999999988631 2677899999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHH
Q 017997 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVV 315 (362)
Q Consensus 236 l~~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~ 315 (362)
+|+++|+|+++|+++++++||+|+++++||+||||+|+|||+++|++.|++.|++ .+++++++++|++||+++++++.
T Consensus 232 l~~~~Gid~~~v~~~~~~~~rig~~~~~pg~G~gg~c~~KD~~~l~~~a~~~g~~--~~l~~~~~~iN~~~~~~~~~~~~ 309 (450)
T 3gg2_A 232 LCERVGADVSMVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYR--MEVLEAVERVNEKQKSILFDKFS 309 (450)
T ss_dssp HHHHHTCCHHHHHHHHHTSTTTCSSSCCCSSCCCSSHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHcCCCCCCcccCCCCCCCCcccHHhhHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHhcCCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 316 ASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 316 ~~~~~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
+.+++.++++||+|||+||||||||+||||++.|++.|+++|.
T Consensus 310 ~~~~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~ 352 (450)
T 3gg2_A 310 TYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGC 352 (450)
T ss_dssp HHTTTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTC
T ss_pred HHhcccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCC
Confidence 9998889999999999999999999999999999999999874
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-74 Score=564.27 Aligned_cols=347 Identities=26% Similarity=0.393 Sum_probs=313.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHH----HHHHHHcCCCCC--CCCChHHHHhh-hcCCCEEEecCH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVS----RINAWNSDQLPI--YEPGLDGVVKQ-CRGKNLFFSTDV 72 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~----~~~~l~~~~~~~--~e~~l~~~~~~-~~~~~l~~t~d~ 72 (362)
+|||+|||+|+||+++|.+|+++ +|| +|++||++++ +++.++++..++ +|+++++++++ ...+++++|+|
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~-~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd- 95 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADA-PCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD- 95 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHS-TTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-CCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-
Confidence 58999999999999999999987 479 9999999999 999999999999 89999988764 23578999999
Q ss_pred HhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHH-HHHh-ccC--CC
Q 017997 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEK-ILTH-NSK--GI 148 (362)
Q Consensus 73 ~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~-~l~~-~~~--g~ 148 (362)
.+++++||+||+|||||.+.++ ...+|++++.++.++|.++++++++||++||++|||++++.. ++++ .+. +.
T Consensus 96 ~ea~~~aDvViiaVptp~~~~~---~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~~~ 172 (478)
T 3g79_A 96 FSRISELDAVTLAIQTPFANPK---DLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGE 172 (478)
T ss_dssp GGGGGGCSEEEECCCCCCCSSC---CSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCBTT
T ss_pred HHHHhcCCEEEEecCCchhccC---CccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCcCC
Confidence 5679999999999999987643 112999999999999999999999999999999999998864 5533 321 46
Q ss_pred ceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhcc-CCCCcEEeCChhHHHHHHHHHhHHHHHHH
Q 017997 149 KFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHW-VPEDRILTTNLWSAELSKLAANAFLAQRI 227 (362)
Q Consensus 149 ~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~ae~~Kl~~N~~~~~~i 227 (362)
+|.++++|||+.||.+.+++.+|++||+|++ +++.++++++|+.+ .. .+++.+++++||++|+++|+|++++|
T Consensus 173 d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~-----~~~~~~~~~ly~~~~~~-~~~~~~~~~~aE~~Kl~~N~~~a~~I 246 (478)
T 3g79_A 173 DFALAHAPERVMVGRLLKNIREHDRIVGGID-----EASTKRAVELYSPVLTV-GQVIPMSATAAEVTKTAENTFRDLQI 246 (478)
T ss_dssp TBEEEECCCCCCTTSHHHHHHHSCEEEEESS-----HHHHHHHHHHHGGGCSS-CCEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEeCCccCCccchhhhhcCCcEEEEeCC-----HHHHHHHHHHHhhhccC-CeEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999877655 67889999999998 53 57788999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcCCC--CCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCc----h-hHHHHHHHH
Q 017997 228 SSVNAMSALCEATGANVSQVAFAVGTDS--RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLP----E-VAEYWKQVI 300 (362)
Q Consensus 228 a~~nE~~~l~~~~g~d~~~v~~~~~~~~--~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~----~-~~~~~~~~~ 300 (362)
+++||++.+|+++|+|+++|+++++++| ||+.++++||+||||||+|||+++|++.|++.|++ | .++++++++
T Consensus 247 a~~nE~~~l~e~~GiD~~~v~~~~~~~~~~ri~~~~~~PG~G~GG~c~~KD~~~l~~~a~~~g~~~~~~~~~~~li~~~~ 326 (478)
T 3g79_A 247 AAINQLALYCEAMGINVYDVRTGVDSLKGEGITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGELDYPEGADSIYVLAR 326 (478)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTSCCSSSCCCCCCCCSCCCSSHHHHHHHHHHHHHTTSSCCCCCCSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCchhhhccccCCCCCCcchhhHHHHHHHHHHHHHHcCCCcccccchhHHHHHHH
Confidence 9999999999999999999999999999 88889999999999999999999999999999965 2 268999999
Q ss_pred HHHHHhHHHHHHHHHHHhcC---CCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 301 KINDYQKSRFVNRVVASMFN---TVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 301 ~~N~~~~~~~~~~~~~~~~~---~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
++|+.||+++++++.+.+.+ .++++||+|||+||||||||+||||++.|++.|+++|.
T Consensus 327 ~iN~~~~~~~~~~i~~~l~~~~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~ 387 (478)
T 3g79_A 327 KVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGA 387 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCC
Confidence 99999999999999988853 68999999999999999999999999999999999884
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-73 Score=553.28 Aligned_cols=329 Identities=26% Similarity=0.380 Sum_probs=286.4
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
||||+|||+|+||+++|..|++ ||+|++||+++++++.++++..+++|+++++++.+. .+++++++|+++++++||
T Consensus 36 ~mkIaVIGlG~mG~~lA~~La~---G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~-~~~l~~ttd~~ea~~~aD 111 (432)
T 3pid_A 36 FMKITISGTGYVGLSNGVLIAQ---NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEK-PLNFRATTDKHDAYRNAD 111 (432)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT---TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS-CCCEEEESCHHHHHTTCS
T ss_pred CCEEEEECcCHHHHHHHHHHHc---CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhc-cCCeEEEcCHHHHHhCCC
Confidence 5899999999999999999985 799999999999999999999999999999887541 357999999988899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
+||+|||+|.+.+ ++.+|++++++++++|.+ ++++++||++||++|||++++.+.+.+. .++|+|||++
T Consensus 112 vViiaVPt~~~~~----~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~------~v~~sPe~~~ 180 (432)
T 3pid_A 112 YVIIATPTDYDPK----TNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGID------NVIFSPEFLR 180 (432)
T ss_dssp EEEECCCCEEETT----TTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCC------CEEECCCCCC
T ss_pred EEEEeCCCccccc----cccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhc------cEeecCccCC
Confidence 9999999986542 236899999999999999 9999999999999999999998777542 5789999999
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhc--cCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAH--WVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (362)
||.+.+++.+|++|++|+. ++..+++.++|.. +....++..+++++||++||++|+|++++|+++||++.+|+
T Consensus 181 ~G~A~~~~l~p~rIvvG~~-----~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae 255 (432)
T 3pid_A 181 EGRALYDNLHPSRIVIGER-----SARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAE 255 (432)
T ss_dssp TTSHHHHHHSCSCEEESSC-----SHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcccCCceEEecCC-----HHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999976 3567888888886 22123577889999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 017997 239 ATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASM 318 (362)
Q Consensus 239 ~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~ 318 (362)
++|+|+++|++++++|||||.+|++||+||||||||||+++|++.+ .|++ .+++++++++|++||+++++++++.
T Consensus 256 ~~GiD~~~v~~~~~~dprig~~~~~pg~G~GG~C~pkD~~~L~~~~--~~~~--~~li~~~~~~N~~~~~~v~~~i~~~- 330 (432)
T 3pid_A 256 SQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANY--ESVP--NNIIAAIVDANRTRKDFIADSILAR- 330 (432)
T ss_dssp HTTCCHHHHHHHHHTSTTTCSSSCCCCSCCCTTTHHHHHHHHHHHT--TTSC--CSHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HcCCCHHHHHHHHccCCCCCcccCCCCCCCcccchhhhHHHHHHHh--cCCc--hhHHHHHHHHHHhhHHHHHHHHHhh-
Confidence 9999999999999999999999999999999999999999998654 5787 7899999999999999999999765
Q ss_pred cCCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 319 FNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 319 ~~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
.+++|+||||||||||||+|+||++.|++.|+++|.
T Consensus 331 ----~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~G~ 366 (432)
T 3pid_A 331 ----KPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGI 366 (432)
T ss_dssp ----CCSSEEEECC-----------CHHHHHHHHHHHTTC
T ss_pred ----cCCEEEEEeeEeCCCCcchhcChHHHHHHHHHhcCC
Confidence 478999999999999999999999999999999985
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-71 Score=549.34 Aligned_cols=358 Identities=62% Similarity=1.042 Sum_probs=323.1
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
||||+|||+|+||+++|.+|+++++||+|++||+++++++.++++..+++|+++++++.....+++++++|+.+++++||
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aD 88 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEAD 88 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCC
Confidence 47999999999999999999998556999999999999999999999999999988765433456999999988899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHh-cc--CCCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH-NS--KGIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~-~~--~g~~~~v~~~Pe 157 (362)
+||+|||||.+.+|.++++.+|++++.+++++|.++++++++||++||++||+++.+.+.+++ .. .+.+|+++++||
T Consensus 89 vvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~~~Pe 168 (481)
T 2o3j_A 89 LIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPE 168 (481)
T ss_dssp EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEEECCC
T ss_pred EEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEEeCcc
Confidence 999999999865432234579999999999999999999999999999999999999888877 43 246788999999
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
++.||.+.+++.+++++++|+.++.+++++.+.++++|+.++...+++.++++++||.|+++|++++++++++||+..+|
T Consensus 169 ~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~~ia~~nE~~~la 248 (481)
T 2o3j_A 169 FLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVC 248 (481)
T ss_dssp CCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998999999999875433346889999999998621467788999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 017997 238 EATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVAS 317 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 317 (362)
+++|+|+++++++++++||++.++++||+||||||+|||++++++.|++.|+++.++++++++++|++||.++++++.+.
T Consensus 249 ~~~Gid~~~v~~~~~~~~ri~~~~~~pg~g~gg~c~~KD~~~l~~~A~~~g~~~~~~l~~~~~~~N~~~~~~~~~~~~~~ 328 (481)
T 2o3j_A 249 EATGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININNWQRRRFADKIIAE 328 (481)
T ss_dssp HHHSCCHHHHHHHHHTSTTTCSSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCHHHHHHHHccCCCCCCCCCCCCCccCCccHHHHHHHHHHHHHHcCCCccchHHHHHHHHHHhhHHHHHHHHHHh
Confidence 99999999999999999999989999999999999999999999999999998778999999999999999999999999
Q ss_pred hcCCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 318 ~~~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
+++.++++||+|||+|||+||||+||||+++|++.|+++|.
T Consensus 329 l~~~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~ 369 (481)
T 2o3j_A 329 LFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHA 369 (481)
T ss_dssp TTTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTC
T ss_pred hccccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCC
Confidence 87778999999999999999999999999999999999985
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-69 Score=535.29 Aligned_cols=348 Identities=37% Similarity=0.582 Sum_probs=317.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|+||+++|.+|+++ ||+|++||+++++++.+++++.+++++++++++.+ ...+++++++|+++++++||
T Consensus 9 ~~I~VIG~G~vG~~lA~~la~~--G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aD 86 (478)
T 2y0c_A 9 MNLTIIGSGSVGLVTGACLADI--GHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGD 86 (478)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCS
T ss_pred ceEEEECcCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCC
Confidence 8999999999999999999999 99999999999999999999999999999877653 23567999999988899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhcc-CC---CceEEeeCC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KG---IKFQILSNP 156 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~-~g---~~~~v~~~P 156 (362)
+||+|||||.+.++ .+|++++++++++|.++++++++|+++||++||+++.+.+.+++.. .| .+|.++++|
T Consensus 87 vviiaVptp~~~~~-----~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g~~~~~~~v~~~P 161 (478)
T 2y0c_A 87 VQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNP 161 (478)
T ss_dssp EEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECC
T ss_pred EEEEEeCCCcccCC-----CccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCCCCCccEEEEECh
Confidence 99999999987755 8999999999999999999999999999999999999888776541 12 578899999
Q ss_pred cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC-CCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 017997 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP-EDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (362)
|++.||.+.+++.+|+++++|+.+.....++.+.++++|+.++. ..++..+|++.+||.|+++|++++++++++||+..
T Consensus 162 e~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~ 241 (478)
T 2y0c_A 162 EFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELAN 241 (478)
T ss_dssp CCCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876310001788999999998762 24677889999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHH
Q 017997 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVV 315 (362)
Q Consensus 236 l~~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~ 315 (362)
+|+++|+|+++++++++.++|++..+++||+|+||+|+|||++++.+.|++.|++ .++++++.++|+.||+++++++.
T Consensus 242 la~~~Gid~~~v~~~i~~~~rig~~~~~pG~g~gg~c~~kD~~~l~~~A~~~gv~--~pl~~~v~~in~~~~~~~~~~~~ 319 (478)
T 2y0c_A 242 LADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHGQS--LQILKAVSSVNATQKRVLADKIV 319 (478)
T ss_dssp HHHHTTCCHHHHHHHHHTSTTTCSTTCCCSSCCCSSSHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHhcCCccCcccCCCCcccccCcCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999888899999999999999999999999999999 89999999999999999999999
Q ss_pred HHhcCCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 316 ASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 316 ~~~~~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
+.+++.++++||+||||||||||||+||||++.|++.|+++|.
T Consensus 320 ~~~~~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~ 362 (478)
T 2y0c_A 320 ARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGA 362 (478)
T ss_dssp HHHCSCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTC
T ss_pred HHhcccCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCC
Confidence 9987789999999999999999999999999999999999985
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-68 Score=528.81 Aligned_cols=358 Identities=68% Similarity=1.097 Sum_probs=321.4
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
||||+|||+|+||+++|..|+++++||+|++||+++++++.++++..+++++++++++.+....++++++|+++++++||
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aD 84 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEAD 84 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCC
Confidence 47999999999999999999998557999999999999999999999999999987765433346899999988899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC-CCceEEeeCCccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFL 159 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~-g~~~~v~~~Pe~~ 159 (362)
+||+|||+|.+.++...++.+|++++.++++++.++++++++|+++||++|++++.+.+.+++... +.++.+.++||++
T Consensus 85 vViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~Pe~~ 164 (467)
T 2q3e_A 85 LVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFL 164 (467)
T ss_dssp EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECCCCC
T ss_pred EEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCHHHh
Confidence 999999999764321112369999999999999999999999999999999999999888877543 4678899999999
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (362)
.+|.+.+++.+++++++|+..+..++++.+.++++|+.+....+++.++++.+|+.|+++|++++++++++||+..+|++
T Consensus 165 ~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~ 244 (467)
T 2q3e_A 165 AEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEA 244 (467)
T ss_dssp CTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999983222247889999999999831247788899999999999999999999999999999999
Q ss_pred hCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhc
Q 017997 240 TGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMF 319 (362)
Q Consensus 240 ~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~ 319 (362)
+|+|++++++++++++++++++++||+||||+|+|||++++++.|++.|+++..+++++++++|+.|++++++++.+.+.
T Consensus 245 ~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 324 (467)
T 2q3e_A 245 TGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLF 324 (467)
T ss_dssp HTCCHHHHHHHHHTSTTTCSSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hCcCHHHHHHHHcCCCCCCccccCCCCCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 99999999999999999888899999999999999999999999999999877899999999999999999999998887
Q ss_pred CCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 320 ~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
+.++++||+|||+||||||||+||||++.|++.|+++|.
T Consensus 325 ~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~ 363 (467)
T 2q3e_A 325 NTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGA 363 (467)
T ss_dssp TCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTC
T ss_pred cccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCC
Confidence 778999999999999999999999999999999999985
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-66 Score=504.10 Aligned_cols=338 Identities=23% Similarity=0.336 Sum_probs=298.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|+||+++|..|++ ||+|++||+++++++.++++..+++|+++++++.. ..+++++++++.++++++|+
T Consensus 1 MkI~VIG~G~vG~~~A~~La~---G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~-~~~~l~~t~~~~~~~~~aDv 76 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL---QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS-KQLSIKATLDSKAAYKEAEL 76 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT---TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-SCCCEEEESCHHHHHHHCSE
T ss_pred CEEEEECCCHHHHHHHHHHhC---CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHh-ccCcEEEeCCHHHHhcCCCE
Confidence 799999999999999999986 69999999999999999999999999998887654 24568899998888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (362)
||+|||+|.+.. ++.+|++++.++++++.+ ++++++|+.+||++||+++.+.+.+.+ + .++++||+..|
T Consensus 77 viiavpt~~~~~----~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~-----~-~v~~~Pe~~~~ 145 (402)
T 1dlj_A 77 VIIATPTNYNSR----INYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQT-----D-RIIFSPEFLRE 145 (402)
T ss_dssp EEECCCCCEETT----TTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTC-----S-CEEECCCCCCT
T ss_pred EEEecCCCcccC----CCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCC-----C-eEEECCccccC
Confidence 999999985321 237899999999999999 999999999999999999988765543 2 57899999999
Q ss_pred CccccccCCCCeEEEecCCCc--chHHHHHHHHHHHhc-cCCCC-cEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 162 GTAIQDLFNPDRVLIGGRETP--EGQKAVKALKDVYAH-WVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 162 g~a~~~~~~~~~viiG~~~~~--~~~~~~~~~~~l~~~-~~~~~-~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
|.+..++.+++++++|+.+.. ...+..+.+.++|.. ..... +++.++++.+||.|+++|++++++++++||+..+|
T Consensus 146 G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~ 225 (402)
T 1dlj_A 146 SKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYA 225 (402)
T ss_dssp TSTTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999899999999987311 012556778888875 43212 46778999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 017997 238 EATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVAS 317 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 317 (362)
+++|+|+++++++++.+||++.+++.||+||||||+|||+++|++.|+ |++ .+++++++++|++||.++++++.+.
T Consensus 226 ~~~Gid~~~v~~~~~~~~ri~~~~~~pg~g~gg~c~~kD~~~l~~~a~--~~~--~~l~~~~~~~N~~~~~~~~~~~~~~ 301 (402)
T 1dlj_A 226 ESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQLLANYN--NIP--QTLIEAIVSSNNVRKSYIAKQIINV 301 (402)
T ss_dssp HHTTCCHHHHHHHHHTSTTTCSSSCCCCSSCCSSHHHHHHHHHHHHHT--TSS--CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHhccCCCCCcCCCCCCCccCCccHHhhHHHHHHHhc--CCC--hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999889999999999999999999999885 777 7899999999999999999999998
Q ss_pred hcC-CCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 318 MFN-TVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 318 ~~~-~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
+++ .+++++|+|||+||||||||+||||++.|++.|+++|.
T Consensus 302 ~~~~~~~~~~v~vlGlafK~~~~d~R~sp~~~i~~~L~~~g~ 343 (402)
T 1dlj_A 302 LKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDI 343 (402)
T ss_dssp HTTSCCSSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSC
T ss_pred hhhcCCCCCEEEEEeeeccCCCcccccChHHHHHHHHHHCCC
Confidence 864 68999999999999999999999999999999999984
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-65 Score=500.25 Aligned_cols=337 Identities=28% Similarity=0.460 Sum_probs=308.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|+||+++|..|+++ ||+|++||+++++++.+++++.+++++++++++... ..+++++++|+++++++||
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~--G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aD 78 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD 78 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCC
Confidence 7999999999999999999999 999999999999999999999999999999877542 2467999999988899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCC---CCEEEEeeCCcccc-HHHHHHHHHhc-cC--CCceEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKS---DKIVVEKSTVPVKT-AEAIEKILTHN-SK--GIKFQIL 153 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~---~~iVv~~STv~~gt-~~~l~~~l~~~-~~--g~~~~v~ 153 (362)
+||+|||+|.+.++ .+|++++.+++++|.+++++ +++|+++||+++|+ .+.+.+.+++. +. +.++.+.
T Consensus 79 vviiaVptp~~~~~-----~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~ 153 (436)
T 1mv8_A 79 VSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVG 153 (436)
T ss_dssp EEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEE
T ss_pred EEEEEcCCCcccCC-----CcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEE
Confidence 99999999987654 89999999999999999998 99999999999999 67788888764 21 3578899
Q ss_pred eCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHH
Q 017997 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 233 (362)
Q Consensus 154 ~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (362)
++||++.||.+.+++.+++++++|+. ++++.+.++++|+.++. ++..++++.+||.|++.|++++++++++||+
T Consensus 154 ~~Pe~~~~G~~~~~~~~~~~iv~G~~----~~~~~~~~~~l~~~~~~--~v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~ 227 (436)
T 1mv8_A 154 TNPEFLRESTAIKDYDFPPMTVIGEL----DKQTGDLLEEIYRELDA--PIIRKTVEVAEMIKYTCNVWHAAKVTFANEI 227 (436)
T ss_dssp ECCCCCCTTSHHHHHHSCSCEEEEES----SHHHHHHHHHHHTTSSS--CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECcccccccccchhccCCCEEEEEcC----CHHHHHHHHHHHhccCC--CEEcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988875 37888999999999863 5666899999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHhcCCCCCC--CCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHH
Q 017997 234 SALCEATGANVSQVAFAVGTDSRIG--PKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFV 311 (362)
Q Consensus 234 ~~l~~~~g~d~~~v~~~~~~~~~i~--~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~ 311 (362)
..+|+++|+|++++.++++.+++++ +++++||+||||+|+|||++++.+.|+++|++ .+++++++++|+.||++++
T Consensus 228 ~~l~~~~Gid~~~v~~~~~~~~r~~~~~~~~~pg~g~gg~~~~kD~~~l~~~a~~~g~~--~pl~~~v~~in~~~~~~~~ 305 (436)
T 1mv8_A 228 GNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVE--HPMLGSLMRSNSNQVQKAF 305 (436)
T ss_dssp HHHHHHTTSCHHHHHHHHTTCTTTTTSSTTCSCCSCCCSSSHHHHHHHHHHHHHHTTCC--CTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHhcCCCCCCCcccCCCCcccccCcCcHhhHHHHHHHHHHcCCC--cHHHHHHHHHHhHhHHHHH
Confidence 9999999999999999999999988 78899999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHhcCCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 312 NRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 312 ~~~~~~~~~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
+++++. +++||+|||+||||||||+||||++.|++.|+++|.
T Consensus 306 ~~~~~~-----~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~ 347 (436)
T 1mv8_A 306 DLITSH-----DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGY 347 (436)
T ss_dssp HHHTTS-----SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHh-----cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCC
Confidence 998643 789999999999999999999999999999999985
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=263.54 Aligned_cols=251 Identities=18% Similarity=0.198 Sum_probs=204.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|+||.++|.+|+++ ||+|++||+++++++.+++. +++++++++++++ +|+
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~~~~~-aDv 73 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEW--PGGVTVYDIRIEAMTPLAEA-------------------GATLADSVADVAA-ADL 73 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTS--TTCEEEECSSTTTSHHHHHT-------------------TCEECSSHHHHTT-SSE
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHC-------------------CCEEcCCHHHHHh-CCE
Confidence 5899999999999999999999 99999999999998887752 3677889999888 999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (362)
||+|||++. .++++++++.+.++++++|+++||++|++++++.+.+.+. |. .++.+|....+
T Consensus 74 vi~~vp~~~--------------~~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~--g~--~~~~~pv~g~~ 135 (296)
T 3qha_A 74 IHITVLDDA--------------QVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKAR--DI--HIVDAPVSGGA 135 (296)
T ss_dssp EEECCSSHH--------------HHHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGG--TC--EEEECCEESCH
T ss_pred EEEECCChH--------------HHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHc--CC--EEEeCCCcCCH
Confidence 999998642 4677889999999999999999999999999988877664 22 34566765544
Q ss_pred CccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Q 017997 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241 (362)
Q Consensus 162 g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~g 241 (362)
..+..+. ..+++|++ +++.++++++|+.++. .++++++++.+++.|+++|.+.+.++++++|+..+|++.|
T Consensus 136 ~~a~~g~---l~~~~gg~-----~~~~~~~~~ll~~~g~-~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G 206 (296)
T 3qha_A 136 AAAARGE---LATMVGAD-----REVYERIKPAFKHWAA-VVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAG 206 (296)
T ss_dssp HHHHHTC---EEEEEECC-----HHHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCC---ccEEecCC-----HHHHHHHHHHHHHHcC-CeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4332221 14677875 7889999999999873 4556678999999999999999999999999999999999
Q ss_pred CCHHHH------HHHhcCCCCC-----CCCCcc-CCCCCcc-----cChhHhHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 017997 242 ANVSQV------AFAVGTDSRI-----GPKFLN-ASVGFGG-----SCFQKDILNLVYICECNGLPEVAEYWKQVIKIN 303 (362)
Q Consensus 242 ~d~~~v------~~~~~~~~~i-----~~~~~~-~g~g~gg-----~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N 303 (362)
+|++++ .++++..+.- +.+++. .++||+. .|++||+.++.+.|++.|++ .|+++.+.+.=
T Consensus 207 ~d~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~--~p~~~~~~~~~ 283 (296)
T 3qha_A 207 LDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHTRGLGEKDLSLALALGEAVSVD--LPLARLAYEGL 283 (296)
T ss_dssp CCHHHHHHHHHHHHHHHCCGGGGCCCSSCSCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred CCHHHHhhhcchHHHHhcCcccCHHhhchhhhhcCCCCCchhhhhhHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHH
Confidence 999999 9988753210 222222 2578888 99999999999999999999 78888766543
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=262.18 Aligned_cols=252 Identities=16% Similarity=0.133 Sum_probs=206.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+|||+|||+|+||.++|..|++. ||+|++||+++++++.+.+. .+..+++++++++++|
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~l~~~-------------------g~~~~~~~~e~~~~aD 89 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEA--GYALQVWNRTPARAASLAAL-------------------GATIHEQARAAARDAD 89 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTT-------------------TCEEESSHHHHHTTCS
T ss_pred CCEEEEECccHHHHHHHHHHHhC--CCeEEEEcCCHHHHHHHHHC-------------------CCEeeCCHHHHHhcCC
Confidence 47999999999999999999999 99999999999999988762 3567889999899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHH--HHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR--VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~--~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
+||+|||++. .++.++. ++.+.++++++|++.||++|.+++.+.+.+.+. | ..++.+|..
T Consensus 90 vVi~~vp~~~--------------~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~--g--~~~~~~pv~ 151 (320)
T 4dll_A 90 IVVSMLENGA--------------VVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGAL--G--IAHLDTPVS 151 (320)
T ss_dssp EEEECCSSHH--------------HHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHT--T--CEEEECCEE
T ss_pred EEEEECCCHH--------------HHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHc--C--CEEEeCCCc
Confidence 9999998642 3566666 788889999999999999999999888777664 2 234567866
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (362)
..+..+..+ ...+++|++ +++.++++++|+.+ . .+++.++++.+++.|+++|.+.+.++++++|+..+|+
T Consensus 152 g~~~~a~~g---~l~i~~gg~-----~~~~~~~~~ll~~~-~-~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~ 221 (320)
T 4dll_A 152 GGTVGAEQG---TLVIMAGGK-----PADFERSLPLLKVF-G-RATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFAT 221 (320)
T ss_dssp CHHHHHHHT---CEEEEEESC-----HHHHHHHHHHHHHH-E-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhHHhcC---CeeEEeCCC-----HHHHHHHHHHHHhc-C-CEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555433222 124678875 78899999999998 4 5667778999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCCCC-------CCCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 017997 239 ATGANVSQVAFAVGTDSRIG-------PKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIN 303 (362)
Q Consensus 239 ~~g~d~~~v~~~~~~~~~i~-------~~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N 303 (362)
+.|+|++++.++++.++..+ +.++ .+.+||+..|++||+.++.+.+++.|++ .++.+++.+.-
T Consensus 222 ~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~gf~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~~~ 293 (320)
T 4dll_A 222 KGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARLSIQLKDMRNALATAQEIGFD--APITGLFEQLY 293 (320)
T ss_dssp HTSCCHHHHHHHHTTSTTCBHHHHTHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHcccccCHHHHHhhhhhccCCCCCcccHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHH
Confidence 99999999999998764211 1111 2357899999999999999999999999 78887766544
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=262.38 Aligned_cols=254 Identities=13% Similarity=0.113 Sum_probs=206.7
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
||||+|||+|+||.++|..|+++ ||+|++||+++++++.+.+. .++.+++++++++++|
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~-------------------g~~~~~~~~~~~~~aD 79 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKN--GFKVTVWNRTLSKCDELVEH-------------------GASVCESPAEVIKKCK 79 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSGGGGHHHHHT-------------------TCEECSSHHHHHHHCS
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHC-------------------CCeEcCCHHHHHHhCC
Confidence 68999999999999999999999 99999999999999888752 2567788999899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+||+|||+|. .+++++ +++.+.++++++|+++||++|++++.+.+.+++. |. .++.+|.
T Consensus 80 vvi~~vp~~~--------------~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~--g~--~~v~~pv 141 (310)
T 3doj_A 80 YTIAMLSDPC--------------AALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGK--GG--RFVEGPV 141 (310)
T ss_dssp EEEECCSSHH--------------HHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHT--TC--EEEECCE
T ss_pred EEEEEcCCHH--------------HHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHc--CC--EEEeCCC
Confidence 9999998642 356666 7788889999999999999999999988877664 22 3456786
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
...+..+..+ ...+++|++ +++.++++++|+.++. .+++.++++.+++.|++.|.+.+.++++++|+..+|
T Consensus 142 ~g~~~~a~~g---~l~i~~gg~-----~~~~~~~~~ll~~~g~-~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~ 212 (310)
T 3doj_A 142 SGSKKPAEDG---QLIILAAGD-----KALFEESIPAFDVLGK-RSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLA 212 (310)
T ss_dssp ECCHHHHHHT---CEEEEEEEC-----HHHHHHHHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHhcC---CeEEEEcCC-----HHHHHHHHHHHHHhCC-CEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554443322 224677876 7889999999999873 355667899999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 017997 238 EATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIND 304 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~~~~~i~~-------~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~ 304 (362)
++.|+|++++.++++.++..++ .++ .+.+||++.|++||+.++++.|++.|++ .++++++.++-+
T Consensus 213 ~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~~~~ 286 (310)
T 3doj_A 213 DKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMRLALALGDENAVS--MPVAAAANEAFK 286 (310)
T ss_dssp HHTTSCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCccHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHH
Confidence 9999999999999987542111 111 2357899999999999999999999999 788887665443
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-33 Score=258.06 Aligned_cols=252 Identities=17% Similarity=0.176 Sum_probs=207.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+||+|||+|.||.+||.+|+++ ||+|++|||++++++.+.+. ..+..+++.++++.+|
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~--G~~v~v~dr~~~~~~~l~~~-------------------Ga~~a~s~~e~~~~~d 61 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKA--GYLLNVFDLVQSAVDGLVAA-------------------GASAARSARDAVQGAD 61 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHT-------------------TCEECSSHHHHHTTCS
T ss_pred cCEEEEeeehHHHHHHHHHHHhC--CCeEEEEcCCHHHHHHHHHc-------------------CCEEcCCHHHHHhcCC
Confidence 67999999999999999999999 99999999999999988752 3567889999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHH---HHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR---VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~---~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+||+|+|++ ..+++++. .+.+.++++++||++||+.|.+++++.+.+++.+ ..++.+|.
T Consensus 62 vv~~~l~~~--------------~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G----~~~lDaPV 123 (300)
T 3obb_A 62 VVISMLPAS--------------QHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERG----LAMLDAPV 123 (300)
T ss_dssp EEEECCSCH--------------HHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTT----CEEEECCE
T ss_pred ceeecCCch--------------HHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CEEEecCC
Confidence 999999864 24566654 3667788999999999999999999998887753 35678897
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
..++..+..+.. .+++||+ ++++++++++|+.++. ..++.++++.+..+|+++|.+.+.+++.+.|...++
T Consensus 124 sGg~~~A~~G~L---~imvGG~-----~~~~~~~~p~l~~~g~-~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la 194 (300)
T 3obb_A 124 SGGTAGAAAGTL---TFMVGGD-----AEALEKARPLFEAMGR-NIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALG 194 (300)
T ss_dssp ESCHHHHHHTCE---EEEEESC-----HHHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHhCCE---EEEEeCC-----HHHHHHHHHHHHHhCC-CEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666654433 4788987 7899999999999973 455678999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCC-------C-------C--CccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHH
Q 017997 238 EATGANVSQVAFAVGTDSRIG-------P-------K--FLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~~~~~i~-------~-------~--~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (362)
++.|+|++.+.++++..+.-+ + . .-++.++|....+.||+.+..+.|++.|++ .|+.+.+.+
T Consensus 195 ~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~f~~~l~~KDl~l~~~~A~~~g~~--~p~~~~a~~ 272 (300)
T 3obb_A 195 VANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASS--TPMGSLALS 272 (300)
T ss_dssp HHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHhCcccchHHHhhccccchhhhccccccCCccchHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence 999999999999987643110 0 0 012346788888999999999999999999 787776654
Q ss_pred H
Q 017997 302 I 302 (362)
Q Consensus 302 ~ 302 (362)
.
T Consensus 273 ~ 273 (300)
T 3obb_A 273 L 273 (300)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=254.31 Aligned_cols=250 Identities=16% Similarity=0.166 Sum_probs=198.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIV 82 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (362)
||+|||+|+||.+||.+|+++ ||+|++|||++++++.+.+ ...+..+++.++++++|+|
T Consensus 7 kIgfIGLG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~-------------------~G~~~~~s~~e~~~~~dvv 65 (297)
T 4gbj_A 7 KIAFLGLGNLGTPIAEILLEA--GYELVVWNRTASKAEPLTK-------------------LGATVVENAIDAITPGGIV 65 (297)
T ss_dssp EEEEECCSTTHHHHHHHHHHT--TCEEEEC-------CTTTT-------------------TTCEECSSGGGGCCTTCEE
T ss_pred cEEEEecHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH-------------------cCCeEeCCHHHHHhcCCce
Confidence 899999999999999999999 9999999999998877654 2356778899999999999
Q ss_pred EEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccccc
Q 017997 83 FVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (362)
Q Consensus 83 ii~vptp~~~~g~~~~~~~d~~~l~~~~-~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (362)
|+|+|++. .+++++ ..+.+.+++++++|++||+.|.+++++.+.+.+.+ +.++.+|....+
T Consensus 66 i~~l~~~~--------------~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g----~~~ldapVsGg~ 127 (297)
T 4gbj_A 66 FSVLADDA--------------AVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYG----AHYVGAPIFARP 127 (297)
T ss_dssp EECCSSHH--------------HHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCEECCH
T ss_pred eeeccchh--------------hHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcC----CceecCCcCCCc
Confidence 99998642 233333 45778889999999999999999999988887753 456889988777
Q ss_pred CccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeC-ChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 017997 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT-NLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (362)
Q Consensus 162 g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (362)
..+..+.. .+++|++ +++.++++++|+.++. ..++.+ +++.++.+|+++|.+.+.+++.++|...++++.
T Consensus 128 ~~a~~g~l---~im~gG~-----~~~~~~~~~~l~~~g~-~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~ 198 (297)
T 4gbj_A 128 EAVRAKVG---NICLSGN-----AGAKERIKPIVENFVK-GVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKN 198 (297)
T ss_dssp HHHHHTCC---EEEEEEC-----HHHHHHHHHHHHTTCS-EEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccc---eeecccc-----hhHHHHHHHHHHHhhC-CeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66654433 4778887 7899999999999973 345566 579999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCC-------Cc--cC-CCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHH
Q 017997 241 GANVSQVAFAVGTDSRIGPK-------FL--NA-SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKI 302 (362)
Q Consensus 241 g~d~~~v~~~~~~~~~i~~~-------~~--~~-g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~ 302 (362)
|+|+++++++++..+.-++. .. ++ .+||.-..+.||+.+.++.|++.|++ .|+.+.+.+.
T Consensus 199 Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~p~~f~~~l~~KDl~l~~~~A~~~g~~--~p~~~~~~~~ 268 (297)
T 4gbj_A 199 GISRQSIYEMLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLKDINLTLQTASDVNAP--MPFADIIRNR 268 (297)
T ss_dssp TCCHHHHHHHHHTTTTCSHHHHHHHHHHHHTCCCSCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcccCchhhccCccccCCCCCCccchhHHHHHHHHHHHHHHHHhCCC--ChHHHHHHHH
Confidence 99999999999876421110 00 12 24788888999999999999999999 7887766553
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=253.41 Aligned_cols=254 Identities=16% Similarity=0.121 Sum_probs=206.7
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.|||+|||+|+||.++|..|+++ ||+|++||+++++++.+.+. ++..+++++++++++|
T Consensus 1 s~~i~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~~~~~~aD 59 (287)
T 3pef_A 1 SQKFGFIGLGIMGSAMAKNLVKA--GCSVTIWNRSPEKAEELAAL-------------------GAERAATPCEVVESCP 59 (287)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSGGGGHHHHHT-------------------TCEECSSHHHHHHHCS
T ss_pred CCEEEEEeecHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCeecCCHHHHHhcCC
Confidence 38999999999999999999999 99999999999999888753 3567789999899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+||+|||+|. .+++++ +++.+.++++++|+++||++|.+.+.+.+.+++. |. .++.+|.
T Consensus 60 vvi~~vp~~~--------------~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~--g~--~~~~~pv 121 (287)
T 3pef_A 60 VTFAMLADPA--------------AAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAK--GG--RFLEAPV 121 (287)
T ss_dssp EEEECCSSHH--------------HHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHT--TC--EEEECCE
T ss_pred EEEEEcCCHH--------------HHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHh--CC--EEEECCC
Confidence 9999998642 456777 8888999999999999999999999888777664 22 3455786
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
...+..+..+ ...+++|++ +++.++++++|+.++. .+++.++++.+++.|+++|.+.+.++++++|+..+|
T Consensus 122 ~g~~~~a~~g---~l~~~~gg~-----~~~~~~~~~ll~~~g~-~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~ 192 (287)
T 3pef_A 122 SGSKKPAEDG---TLIILAAGD-----RNLYDEAMPGFEKMGK-KIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALG 192 (287)
T ss_dssp ECCHHHHHHT---CEEEEEEEC-----HHHHHHHHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhcC---CEEEEEeCC-----HHHHHHHHHHHHHhCC-CeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555443222 114667775 6889999999999873 355667899999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 017997 238 EATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIND 304 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~~~~~i~~-------~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~ 304 (362)
++.|+|++++.++++..+..++ .++ .+.+||++.|++||+.++.+.|++.|++ .|+++++.+.-+
T Consensus 193 ~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~~~ 266 (287)
T 3pef_A 193 EKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQP--LVASAAANELFK 266 (287)
T ss_dssp HHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHH
Confidence 9999999999999986531111 111 2357899999999999999999999999 788887665543
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=254.01 Aligned_cols=254 Identities=17% Similarity=0.156 Sum_probs=204.7
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
||||+|||+|+||.++|..|+++ ||+|++||+++++++.+.+. ++..+++++++++++|
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~~~~~~ad 59 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRA--GFDVTVWNRNPAKCAPLVAL-------------------GARQASSPAEVCAACD 59 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHH--TCCEEEECSSGGGGHHHHHH-------------------TCEECSCHHHHHHHCS
T ss_pred CCeEEEEccCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCeecCCHHHHHHcCC
Confidence 78999999999999999999999 99999999999998887652 2567788999899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+||+|||++. .+++++ +++.+.++++++|+++||++|.+.+.+.+.+++. |. .++.+|.
T Consensus 60 vvi~~v~~~~--------------~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~--g~--~~~~~pv 121 (287)
T 3pdu_A 60 ITIAMLADPA--------------AAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTAR--GG--RFLEAPV 121 (287)
T ss_dssp EEEECCSSHH--------------HHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHT--TC--EEEECCE
T ss_pred EEEEEcCCHH--------------HHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHc--CC--EEEECCc
Confidence 9999998642 356666 7788888999999999999999998888777664 22 3455675
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
...+..+..+. ..+++|++ ++..++++++|+.++. .+++.++++.+++.|+++|.+.+.++++++|+..+|
T Consensus 122 ~g~~~~a~~g~---l~~~~gg~-----~~~~~~~~~ll~~~g~-~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~ 192 (287)
T 3pdu_A 122 SGTKKPAEDGT---LIILAAGD-----QSLFTDAGPAFAALGK-KCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALG 192 (287)
T ss_dssp ECCHHHHHHTC---EEEEEEEC-----HHHHHHTHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhcCC---EEEEEeCC-----HHHHHHHHHHHHHhCC-CEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443332221 14667775 7889999999999873 345567899999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 017997 238 EATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIND 304 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~~~~~i~~-------~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~ 304 (362)
++.|+|++++.++++..+..++ .++ .+.+||+..|++||..++.+.+++.|++ .|+.+++.+.-+
T Consensus 193 ~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~~~ 266 (287)
T 3pdu_A 193 RNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQP--LHGAATANESFK 266 (287)
T ss_dssp HHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhccccChHHHhhccccccCCCCCCCcHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHH
Confidence 9999999999999987542111 111 2357899999999999999999999999 788887665543
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-32 Score=251.64 Aligned_cols=254 Identities=14% Similarity=0.100 Sum_probs=202.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|+||.++|..|+++ ||+|++||+++++++.+.+. +...++++++++++++|+
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~------------------g~~~~~~~~~e~~~~aDv 67 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRA--GLSTWGADLNPQACANLLAE------------------GACGAAASAREFAGVVDA 67 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT------------------TCSEEESSSTTTTTTCSE
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHc------------------CCccccCCHHHHHhcCCE
Confidence 7899999999999999999999 99999999999999988763 112236778888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
||+|||++. .++.++ +++.+.++++++|++.||++|.+.+.+.+.+++. |. .++.+|..
T Consensus 68 vi~~vp~~~--------------~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~--g~--~~~~~pv~ 129 (303)
T 3g0o_A 68 LVILVVNAA--------------QVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTAL--NL--NMLDAPVS 129 (303)
T ss_dssp EEECCSSHH--------------HHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTT--TC--EEEECCEE
T ss_pred EEEECCCHH--------------HHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHc--CC--eEEeCCCC
Confidence 999998642 345665 6778889999999999999999998888777664 22 33457765
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCC-hhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN-LWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
..+..+..+ ...+++|++ ++..++++++|+.++. .+++..+ ++.+++.|+++|.+.++++++++|+..+|
T Consensus 130 g~~~~a~~g---~l~~~~gg~-----~~~~~~~~~ll~~~g~-~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~ 200 (303)
T 3g0o_A 130 GGAVKAAQG---EMTVMASGS-----EAAFTRLKPVLDAVAS-NVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALA 200 (303)
T ss_dssp SCHHHHHTT---CEEEEEECC-----HHHHHHHHHHHHHHEE-EEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhcC---CeEEEeCCC-----HHHHHHHHHHHHHHCC-CEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555433222 114667765 7889999999999873 3455665 89999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 017997 238 EATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIND 304 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~~~~~i~~-------~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~ 304 (362)
++.|+|++++.++++.....++ .++ .+.+||+..|++||+.++++.|++.|++ .|+.+++.+.-+
T Consensus 201 ~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kD~~~~~~~a~~~g~~--~p~~~~~~~~~~ 274 (303)
T 3g0o_A 201 ARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVDIFVKDLGLVADTAKALRFP--LPLASTALNMFT 274 (303)
T ss_dssp HHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhcccCCHHHHhhhHHHhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHH
Confidence 9999999999999987531111 111 2357899999999999999999999999 788887665543
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=238.09 Aligned_cols=242 Identities=13% Similarity=0.086 Sum_probs=181.1
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCH-------HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec-C
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISV-------SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-D 71 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~-------~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d 71 (362)
+|||+|||+|+||.++|..|+++ | |+|++||+++ +..+.+.+ .+ + ++ +
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~--G~~~V~~~dr~~~~~~~~~~~~~~~~~------------------~g-~--~~~s 80 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGR--NAARLAAYDLRFNDPAASGALRARAAE------------------LG-V--EPLD 80 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT--TCSEEEEECGGGGCTTTHHHHHHHHHH------------------TT-C--EEES
T ss_pred CCeEEEECccHHHHHHHHHHHHc--CCCeEEEEeCCCccccchHHHHHHHHH------------------CC-C--CCCC
Confidence 37999999999999999999999 9 9999999997 34444332 12 2 44 6
Q ss_pred HHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceE
Q 017997 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQ 151 (362)
Q Consensus 72 ~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~ 151 (362)
+.+++++||+||+|||++. ..+.++++.+.++++++||+.||++|++++++.+.+++.+ ..|
T Consensus 81 ~~e~~~~aDvVi~avp~~~---------------~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g--~~~- 142 (317)
T 4ezb_A 81 DVAGIACADVVLSLVVGAA---------------TKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGK--GSF- 142 (317)
T ss_dssp SGGGGGGCSEEEECCCGGG---------------HHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSS--CEE-
T ss_pred HHHHHhcCCEEEEecCCHH---------------HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC--CeE-
Confidence 7778999999999998643 2345688999999999999999999999999988887642 222
Q ss_pred EeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCC-hhHHHHHHHHHhHHHHHHHHHH
Q 017997 152 ILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN-LWSAELSKLAANAFLAQRISSV 230 (362)
Q Consensus 152 v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ae~~Kl~~N~~~~~~ia~~ 230 (362)
+.+|... |-.+..+ . ..+++|+++ + ++++++|+.++. ..++..+ ++.+++.|+++|.+++++++++
T Consensus 143 -~d~pv~g-~~~a~~g--~-l~i~vgg~~-----~--~~~~~ll~~~g~-~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~ 209 (317)
T 4ezb_A 143 -VEGAVMA-RVPPYAE--K-VPILVAGRR-----A--VEVAERLNALGM-NLEAVGETPGQASSLKMIRSVMIKGVEALL 209 (317)
T ss_dssp -EEEEECS-CSTTTGG--G-SEEEEESTT-----H--HHHHHHHHTTTC-EEEEEESSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -EeccCCC-CchhhcC--C-EEEEEeCCh-----H--HHHHHHHHHhCC-CeEEeCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3334322 1111111 2 247788772 2 789999999863 3455565 8999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcCCC-CCCC-----CCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHH
Q 017997 231 NAMSALCEATGANVSQVAFAVGTDS-RIGP-----KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKI 302 (362)
Q Consensus 231 nE~~~l~~~~g~d~~~v~~~~~~~~-~i~~-----~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~ 302 (362)
+|+..+|+++|+|+ ++++.+.... ...+ .++ .+.+||+ ++||+.++.+.|++.|++ .++++++.++
T Consensus 210 ~E~~~la~~~Gid~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~---~~KDl~~~~~~a~~~g~~--~pl~~~~~~~ 283 (317)
T 4ezb_A 210 IEALSSAERAGVTE-RILDSVQETFPGLDWRDVADYYLSRTFEHGAR---RVTEMTEAAETIESFGLN--APMSRAACET 283 (317)
T ss_dssp HHHHHHHHHTTCHH-HHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCH-HHHHHHHhcCccccHHHhhhhhhcCCCCCCcc---hHHHHHHHHHHHHHcCCC--ChHHHHHHHH
Confidence 99999999999999 5666665432 1111 111 1224444 799999999999999999 8888877655
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-29 Score=234.34 Aligned_cols=250 Identities=11% Similarity=0.054 Sum_probs=190.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCC--HHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS--VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~--~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
||||+|||+|+||.++|..|+++ || +|++||++ +++.+.+.+. ++..++++.++++
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~--G~~~V~~~dr~~~~~~~~~~~~~-------------------g~~~~~~~~e~~~ 82 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQA--GAIDMAAYDAASAESWRPRAEEL-------------------GVSCKASVAEVAG 82 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHH--SCCEEEEECSSCHHHHHHHHHHT-------------------TCEECSCHHHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCCeEEEEcCCCCHHHHHHHHHC-------------------CCEEeCCHHHHHh
Confidence 47999999999999999999999 99 99999997 6777776542 3567788888899
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
++|+||+|||++. ..++++++.+.++++++|++.||+.|++++.+.+.+.+...|.. ++.+|.
T Consensus 83 ~aDvVi~~vp~~~---------------~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~--~vd~pv 145 (312)
T 3qsg_A 83 ECDVIFSLVTAQA---------------ALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQ--YAAVAV 145 (312)
T ss_dssp HCSEEEECSCTTT---------------HHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCE--EEEEEE
T ss_pred cCCEEEEecCchh---------------HHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCe--EEeccc
Confidence 9999999998653 23467889999999999999999999999988877766421222 234444
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCC-hhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN-LWSAELSKLAANAFLAQRISSVNAMSAL 236 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (362)
...+..+ .+ ...+++|+.+ + ++++++|+.++. ..++..+ ++.+++.|+++|.+.+.++++++|+..+
T Consensus 146 ~g~~~~~-~g---~l~i~vgg~~-----~--~~~~~ll~~~g~-~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l 213 (312)
T 3qsg_A 146 MSAVKPH-GH---RVPLVVDGDG-----A--RRFQAAFTLYGC-RIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAA 213 (312)
T ss_dssp CSCSTTT-GG---GSEEEEESTT-----H--HHHHHHHHTTTC-EEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCchhh-cC---CEEEEecCCh-----H--HHHHHHHHHhCC-CeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222 11 1257788772 2 889999999873 3445555 8999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCC------CCCCCcc--CCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHh
Q 017997 237 CEATGANVSQVAFAVGTDSR------IGPKFLN--ASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQ 306 (362)
Q Consensus 237 ~~~~g~d~~~v~~~~~~~~~------i~~~~~~--~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~ 306 (362)
|+++|+|+ ++++.++.... ++..++. +++||. ++||+.++++.+++.|++ .++++++.++-+..
T Consensus 214 a~~~Gld~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~---~~KDl~~~~~~a~~~g~~--~pl~~~~~~~~~~~ 285 (312)
T 3qsg_A 214 AEKMGLAD-RVLASLDASFPEHHLRDLALYLVERNLEHADR---RAHELGEVAATLCSVGVE--PLVAEAGYRRLTRV 285 (312)
T ss_dssp HHTTTCHH-HHHHHHHHHSGGGTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHH
T ss_pred HHHcCCCH-HHHHHHHhcCCchhHHHhhhHhhcCCCCcccc---hHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHH
Confidence 99999999 68888875421 0111111 233443 489999999999999999 78888877766543
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=220.98 Aligned_cols=248 Identities=11% Similarity=0.082 Sum_probs=187.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||.++|..|++. ||+|++||+++++++.+.+. ....+++++++++++|+
T Consensus 10 ~~IgiIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~e~~~~aDv 68 (306)
T 3l6d_A 10 FDVSVIGLGAMGTIMAQVLLKQ--GKRVAIWNRSPGKAAALVAA-------------------GAHLCESVKAALSASPA 68 (306)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHH-------------------TCEECSSHHHHHHHSSE
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHC-------------------CCeecCCHHHHHhcCCE
Confidence 6899999999999999999999 99999999999999887641 24667888888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHH--HHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR--VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~--~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
||+|||++. .+++++. .+.. +.++++|++.||+.|.+++.+.+.+.+. |.. ++.+|...
T Consensus 69 Vi~~vp~~~--------------~~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~--g~~--~vdapv~g 129 (306)
T 3l6d_A 69 TIFVLLDNH--------------ATHEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQA--GGH--YVKGMIVA 129 (306)
T ss_dssp EEECCSSHH--------------HHHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHT--TCE--EEEEEEES
T ss_pred EEEEeCCHH--------------HHHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHc--CCe--EEeccccc
Confidence 999998642 2455554 5544 4689999999999999999888777664 222 34455443
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEe--CC-hhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT--TN-LWSAELSKLAANAFLAQRISSVNAMSAL 236 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (362)
.+...-. .. ..+++|++ ++++++++++|+.++. ..+++ ++ ++.+++.| .+.+.++++++|...+
T Consensus 130 ~~~~~~~--~~-~~i~~gg~-----~~~~~~~~~ll~~lg~-~~~~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~l 196 (306)
T 3l6d_A 130 YPRNVGH--RE-SHSIHTGD-----REAFEQHRALLEGLAG-HTVFLPWDEALAFATVLH----AHAFAAMVTFFEAVGA 196 (306)
T ss_dssp CGGGTTC--TT-CEEEEEEC-----HHHHHHHHHHHHTTCS-EEEECCHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred CcccccC--Cc-eEEEEcCC-----HHHHHHHHHHHHHhcC-CEEEecCCCCccHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3222111 11 24778876 7899999999999862 35555 53 78999999 4556789999999999
Q ss_pred HHHhCCCHHHHHHHhcCCC-----C----CCCCCc--cCCC-CCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 017997 237 CEATGANVSQVAFAVGTDS-----R----IGPKFL--NASV-GFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIND 304 (362)
Q Consensus 237 ~~~~g~d~~~v~~~~~~~~-----~----i~~~~~--~~g~-g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~ 304 (362)
+++.|+|++++.++++... + .++.++ .+.+ +|...|+.||+.++++.+++.|++ .++.+++.+.-+
T Consensus 197 a~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~~~~ 274 (306)
T 3l6d_A 197 GDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGDQARLDVHADAFAHIAQSLHAQGVW--TPVFDAVCQVVQ 274 (306)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHcCCC--chHHHHHHHHHH
Confidence 9999999999999887542 0 011111 1223 467899999999999999999999 788887766543
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=215.18 Aligned_cols=252 Identities=18% Similarity=0.238 Sum_probs=196.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||..+|..|++. |++|++||+++++++.+++. .+..+++++++++++|+
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~D~ 64 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKA--GYSLVVSDRNPEAIADVIAA-------------------GAETASTAKAIAEQCDV 64 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCEECSSHHHHHHHCSE
T ss_pred ceEEEECchHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHC-------------------CCeecCCHHHHHhCCCE
Confidence 6999999999999999999998 99999999999999888752 24566788888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
||+|+|++. .+..++ +++.+.++++++|++.|+..+.+.+.+.+.+++. |. .++.+|..
T Consensus 65 vi~~v~~~~--------------~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~--g~--~~~~~pv~ 126 (299)
T 1vpd_A 65 IITMLPNSP--------------HVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAK--GV--EMLDAPVS 126 (299)
T ss_dssp EEECCSSHH--------------HHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTT--TC--EEEECCEE
T ss_pred EEEECCCHH--------------HHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc--CC--eEEEecCC
Confidence 999998542 345666 6778888999999999998888788887777654 22 33455654
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (362)
..+..+... ...+++|++ ++..+.++++|+.++. ..++..+.+.+.+.|++.|.+.++.+++++|+..+++
T Consensus 127 ~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~ll~~~g~-~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~ 197 (299)
T 1vpd_A 127 GGEPKAIDG---TLSVMVGGD-----KAIFDKYYDLMKAMAG-SVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLAT 197 (299)
T ss_dssp SHHHHHHHT---CEEEEEESC-----HHHHHHHHHHHHTTEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhHHhcC---CEEEEeCCC-----HHHHHHHHHHHHHHcC-CeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333221 124666753 6789999999999862 3445568899999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCCC-------CCCCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 017997 239 ATGANVSQVAFAVGTDSRI-------GPKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIN 303 (362)
Q Consensus 239 ~~g~d~~~v~~~~~~~~~i-------~~~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N 303 (362)
+.|+|++++.+++.....- .+..+ ...+|+...++.||..++.+.+++.|++ .|+.+++.++-
T Consensus 198 ~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~~~~~~ 269 (299)
T 1vpd_A 198 KAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQ--LPLTAAVMEMM 269 (299)
T ss_dssp HTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHccCCCCHHHHHhhhHhhcCCCCCCCChHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHH
Confidence 9999999999998764310 00111 1246788889999999999999999999 78777665543
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-26 Score=218.90 Aligned_cols=264 Identities=16% Similarity=0.204 Sum_probs=200.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC--
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA-- 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a-- 79 (362)
|||+|||+|.||.++|.+|+++ ||+|++||+++++++.+.+. ++..+++++++++.+
T Consensus 23 mkIgiIGlG~mG~~~A~~L~~~--G~~V~v~dr~~~~~~~l~~~-------------------g~~~~~s~~e~~~~a~~ 81 (358)
T 4e21_A 23 MQIGMIGLGRMGADMVRRLRKG--GHECVVYDLNVNAVQALERE-------------------GIAGARSIEEFCAKLVK 81 (358)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTT-------------------TCBCCSSHHHHHHHSCS
T ss_pred CEEEEECchHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHC-------------------CCEEeCCHHHHHhcCCC
Confidence 7999999999999999999999 99999999999999988763 245567888888888
Q ss_pred -cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 80 -DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 80 -DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
|+||+|||++ .+.++++++.+.++++++||+.||+.|.+++++.+.+.+. |. .++.+|..
T Consensus 82 ~DvVi~~vp~~---------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~--~~vdapVs 142 (358)
T 4e21_A 82 PRVVWLMVPAA---------------VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQ--GI--TYVDVGTS 142 (358)
T ss_dssp SCEEEECSCGG---------------GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTT--TC--EEEEEEEE
T ss_pred CCEEEEeCCHH---------------HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHC--CC--EEEeCCCC
Confidence 9999999854 2577889999999999999999999999998887777664 22 33455654
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC-------------------CcEEeCChhHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-------------------DRILTTNLWSAELSKLAA 219 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~~~~~~ae~~Kl~~ 219 (362)
..+..+..+ + .+++|++ ++++++++++|+.++.+ ..+++++.+.++++|+++
T Consensus 143 Gg~~~a~~G---~-~im~GG~-----~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~ 213 (358)
T 4e21_A 143 GGIFGLERG---Y-CLMIGGE-----KQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVH 213 (358)
T ss_dssp CGGGHHHHC---C-EEEEESC-----HHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHH
T ss_pred CCHHHHhcC---C-eeeecCC-----HHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHH
Confidence 444333332 1 5888986 78999999999998721 345677899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHh------------------------CCCHHHHHHHhcCCCCCCCCCc---------cCCC
Q 017997 220 NAFLAQRISSVNAMSALCEAT------------------------GANVSQVAFAVGTDSRIGPKFL---------NASV 266 (362)
Q Consensus 220 N~~~~~~ia~~nE~~~l~~~~------------------------g~d~~~v~~~~~~~~~i~~~~~---------~~g~ 266 (362)
|.+.+.++++++|...++++. |+|+.++.+.++..+.+++.++ +|+.
T Consensus 214 n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~~~~~~p~~ 293 (358)
T 4e21_A 214 NGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATALLDSPDL 293 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCC--------------CGGGCCCCCCHHHHHHHHTTTSTTCBHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhcccCCCHHHHHHHHhCccHHHHHHHHHHHHHHhhCCCh
Confidence 999999999999999999998 8999999999987654433222 2432
Q ss_pred -CCcccChhHhH---HHHHHHHHhCCCchhHHHHHHHHH-HHHHhH-HHHHHHHHHHh
Q 017997 267 -GFGGSCFQKDI---LNLVYICECNGLPEVAEYWKQVIK-INDYQK-SRFVNRVVASM 318 (362)
Q Consensus 267 -g~gg~cl~kD~---~~l~~~a~~~g~~~~~~~~~~~~~-~N~~~~-~~~~~~~~~~~ 318 (362)
.|.+. .||. +..+..|.+.|+| .|++.+++. -...+. +..+.++.+.+
T Consensus 294 ~~~~~~--~~d~g~~r~~~~~A~~~gvp--~p~~~~al~~~~~s~~~~~~~~~l~~a~ 347 (358)
T 4e21_A 294 QEFQGR--VSDSGEGRWTVAAAIDEGVP--AHVLSSALYERFSSRGEDDFANRLLSAM 347 (358)
T ss_dssp TTC--C--CCCCSHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHH--HHhcCcHHHHHHHHHHcCCC--hHHHHHHHHHHHHHCCCcccHHHHHHHH
Confidence 24322 3444 6678889999999 788887652 222222 23344555544
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=215.62 Aligned_cols=253 Identities=18% Similarity=0.167 Sum_probs=195.4
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
||||+|||+|.||..+|..|++. |++|++|| ++++++.+.+. .+..+++++++++++|
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~-~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~D 60 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARA--GHQLHVTT-IGPVADELLSL-------------------GAVNVETARQVTEFAD 60 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHT--TCEEEECC-SSCCCHHHHTT-------------------TCBCCSSHHHHHHTCS
T ss_pred CCEEEEEccCHHHHHHHHHHHhC--CCEEEEEc-CHHHHHHHHHc-------------------CCcccCCHHHHHhcCC
Confidence 58999999999999999999998 99999999 98888877652 1334567788889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHH---HHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR---VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~---~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+||+|+|.+. .+..++. ++.+.++++++|+..|+..+.+.+.+.+.+++. + +.+..+|.
T Consensus 61 ~vi~~vp~~~--------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~--g--~~~~~~p~ 122 (295)
T 1yb4_A 61 IIFIMVPDTP--------------QVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM--G--ADYLDAPV 122 (295)
T ss_dssp EEEECCSSHH--------------HHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT--T--EEEEECCE
T ss_pred EEEEECCCHH--------------HHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc--C--CeEEEccC
Confidence 9999998542 2455665 677778889999998988888888887777653 2 33456676
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
...+..+..+ . ..+++|++ ++..+.++++|+.++. ..++..+.+.+.+.|++.|.+.++.+++++|+..++
T Consensus 123 ~~~~~~a~~g--~-~~~~~~~~-----~~~~~~~~~ll~~~g~-~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~ 193 (295)
T 1yb4_A 123 SGGEIGAREG--T-LSIMVGGE-----QKVFDRVKPLFDILGK-NITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFA 193 (295)
T ss_dssp ESHHHHHHHT--C-EEEEEESC-----HHHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHcC--C-eEEEECCC-----HHHHHHHHHHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544332221 1 13566763 6788999999999862 345567889999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 017997 238 EATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIND 304 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~~~~~i~~-------~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~ 304 (362)
++.|+|++++.+.+.....-.+ .++ ...+|+...++.||+.++++.+++.|++ .++.+++.++.+
T Consensus 194 ~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~~~ 267 (295)
T 1yb4_A 194 SKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIALHQKDLNLALQSAKALALN--LPNTATCQELFN 267 (295)
T ss_dssp HHTTCCHHHHHHHHTSSSSCBHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHcCCCCCHHHHHhhHHHhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHH
Confidence 9999999999999986541100 011 2346788899999999999999999999 788887776654
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=207.35 Aligned_cols=252 Identities=15% Similarity=0.169 Sum_probs=190.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||.++|..|++. |++|++||+++++++.+++. .++.+++++++++++|+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~Dv 59 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKH--GYPLIIYDVFPDACKEFQDA-------------------GEQVVSSPADVAEKADR 59 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHT--TCCEEEECSSTHHHHHHHTT-------------------TCEECSSHHHHHHHCSE
T ss_pred CeEEEEeccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence 7999999999999999999998 99999999999999888752 25567788888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHH---HHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARV---IADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~---i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
||+|+|.|. .+..++.+ +.+.++++++|+..|++++.+.+.+.+.+.+. +. .+..+|..
T Consensus 60 vi~~vp~~~--------------~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~--g~--~~~~~p~~ 121 (296)
T 2gf2_A 60 IITMLPTSI--------------NAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKM--GA--VFMDAPVS 121 (296)
T ss_dssp EEECCSSHH--------------HHHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHT--TC--EEEECCEE
T ss_pred EEEeCCCHH--------------HHHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHc--CC--EEEEcCCC
Confidence 999997542 34555554 34567889999888889998888777666653 22 33456755
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (362)
..+..+... ...+++|++ ++..+.++++|+.++. ..+.....+.+.+.|+++|.++++.+++++|+..+++
T Consensus 122 ~g~~~a~~~---~~~~~~~~~-----~~~~~~v~~l~~~~g~-~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~ 192 (296)
T 2gf2_A 122 GGVGAARSG---NLTFMVGGV-----EDEFAAAQELLGCMGS-NVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGI 192 (296)
T ss_dssp SHHHHHHHT---CEEEEEESC-----GGGHHHHHHHHTTTEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHhcC---cEEEEeCCC-----HHHHHHHHHHHHHHcC-CeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443212111 113556654 5678899999999862 3445567788999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCCC---------CCCCc-------cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHH
Q 017997 239 ATGANVSQVAFAVGTDSRI---------GPKFL-------NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKI 302 (362)
Q Consensus 239 ~~g~d~~~v~~~~~~~~~i---------~~~~~-------~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~ 302 (362)
+.|+|++++.++++..... .+..+ +..+||...++.||..++.+.++++|++ .|+.+++.++
T Consensus 193 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~~~~~ 270 (296)
T 2gf2_A 193 RLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSP--ILLGSLAHQI 270 (296)
T ss_dssp HTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccchhccCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHH
Confidence 9999999999988753210 00111 2235788889999999999999999999 7877766554
Q ss_pred H
Q 017997 303 N 303 (362)
Q Consensus 303 N 303 (362)
-
T Consensus 271 ~ 271 (296)
T 2gf2_A 271 Y 271 (296)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-26 Score=216.05 Aligned_cols=277 Identities=14% Similarity=0.124 Sum_probs=205.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|+||+++|..|+++ ||+|++||+++++++.+++ +..+.+.|+.. ...++++++|++++++++|
T Consensus 30 mkI~VIGaG~mG~alA~~La~~--G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~------l~~~i~~t~d~~ea~~~aD 101 (356)
T 3k96_A 30 HPIAILGAGSWGTALALVLARK--GQKVRLWSYESDHVDEMQAEGVNNRYLPNYP------FPETLKAYCDLKASLEGVT 101 (356)
T ss_dssp SCEEEECCSHHHHHHHHHHHTT--TCCEEEECSCHHHHHHHHHHSSBTTTBTTCC------CCTTEEEESCHHHHHTTCC
T ss_pred CeEEEECccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHcCCCcccCCCCc------cCCCeEEECCHHHHHhcCC
Confidence 7999999999999999999999 9999999999999999986 44555556543 2356899999998899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-CccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
+||+|||+. ++.++++++.++++++++|+..++ +.+++ +.+.+.+++..++..+.+.++|++.
T Consensus 102 vVilaVp~~---------------~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t-~~~se~i~~~l~~~~~~vlsgP~~a 165 (356)
T 3k96_A 102 DILIVVPSF---------------AFHEVITRMKPLIDAKTRIAWGTKGLAKGS-RLLHEVVATELGQVPMAVISGPSLA 165 (356)
T ss_dssp EEEECCCHH---------------HHHHHHHHHGGGCCTTCEEEECCCSCBTTT-BCHHHHHHHHHCSCCEEEEESSCCH
T ss_pred EEEECCCHH---------------HHHHHHHHHHHhcCCCCEEEEEeCCCCcCc-cCHHHHHHHHcCCCCEEEEECccHH
Confidence 999999842 578899999999999998877666 78877 6666666554333456788999988
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHH-----------------HHHhHH
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSK-----------------LAANAF 222 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~K-----------------l~~N~~ 222 (362)
.+... ..|..+++++.+ ++..+.++++|+..+ ...+...|+..+||.| +..|+.
T Consensus 166 ~ev~~----g~pt~~via~~~----~~~~~~v~~lf~~~~-~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~ 236 (356)
T 3k96_A 166 TEVAA----NLPTAVSLASNN----SQFSKDLIERLHGQR-FRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNAR 236 (356)
T ss_dssp HHHHT----TCCEEEEEEESC----HHHHHHHHHHHCCSS-EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHc----CCCeEEEEecCC----HHHHHHHHHHhCCCC-eeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHH
Confidence 76543 456667788763 788999999999754 1244567999989875 456778
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCC-------CCCCCCccCC----CCCc----------ccChhHhHHHHH
Q 017997 223 LAQRISSVNAMSALCEATGANVSQVAFAVGTDS-------RIGPKFLNAS----VGFG----------GSCFQKDILNLV 281 (362)
Q Consensus 223 ~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~~-------~i~~~~~~~g----~g~g----------g~cl~kD~~~l~ 281 (362)
.++.+.+++|+.++|+++|+|++++.++.|... ..+.|+ ..| -|.. ----.++...+.
T Consensus 237 aal~~~~l~E~~~l~~a~G~~~~t~~gl~g~gDl~~tc~s~~sRN~-~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~ 315 (356)
T 3k96_A 237 AALITRGLTEMGRLVSVFGGKQETLTGLAGLGDLVLTCTDNQSRNR-RFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVH 315 (356)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHHCTTCHHH-HHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCChHhhcccchhhHHHHhccCCCCccH-HHHHHHHCCCCHHHHHHHcCCccchHHHHHHHH
Confidence 899999999999999999999999886644211 111111 111 0100 012246778889
Q ss_pred HHHHhCCCchhHHHHHHHHHHH--HHhHHHHHHHH
Q 017997 282 YICECNGLPEVAEYWKQVIKIN--DYQKSRFVNRV 314 (362)
Q Consensus 282 ~~a~~~g~~~~~~~~~~~~~~N--~~~~~~~~~~~ 314 (362)
++++++|++ .|+.+++.++= +.-|+..++.+
T Consensus 316 ~la~~~~v~--~Pi~~~v~~il~~~~~~~~~~~~l 348 (356)
T 3k96_A 316 ALAQKHAIE--MPLTFQVHRILHEDLDPQQAVQEL 348 (356)
T ss_dssp HHHHHTTCC--CHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHcCCC--CcHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999998 88888876542 23345555544
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-25 Score=203.41 Aligned_cols=253 Identities=17% Similarity=0.203 Sum_probs=194.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||..+|..|++. |++|++||+++++.+.+.+. .+..+++++++++++|+
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~D~ 63 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKE--GVTVYAFDLMEANVAAVVAQ-------------------GAQACENNQKVAAASDI 63 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHT--TCEEEEECSSHHHHHHHHTT-------------------TCEECSSHHHHHHHCSE
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHC-------------------CCeecCCHHHHHhCCCE
Confidence 7999999999999999999998 99999999999999888752 24566788888889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHH---HHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR---VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~---~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
||+|+|.+. .+..++. ++.+.++++++|+..|+..+++.+.+.+.+.+. +. .++.+|..
T Consensus 64 vi~~vp~~~--------------~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~--g~--~~~~~p~~ 125 (301)
T 3cky_A 64 IFTSLPNAG--------------IVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEK--GI--DYVDAPVS 125 (301)
T ss_dssp EEECCSSHH--------------HHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHT--TC--EEEECCEE
T ss_pred EEEECCCHH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc--CC--eEEEccCC
Confidence 999998542 3456664 777888999999998888877778887777653 22 33456754
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (362)
..+..+.. ....+++|++ ++..+.++++|+.++. ..++..+.+.+.+.|++.|.+.++.+++++|+..+++
T Consensus 126 ~~~~~a~~---g~~~~~~~g~-----~~~~~~v~~ll~~~g~-~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~ 196 (301)
T 3cky_A 126 GGTKGAEA---GTLTIMVGAS-----EAVFEKIQPVLSVIGK-DIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGV 196 (301)
T ss_dssp SHHHHHHH---TCEEEEEESC-----HHHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHc---CCeEEEECCC-----HHHHHHHHHHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44321111 1113556753 6788999999999862 3345677899999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCC-------CCC-CCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 017997 239 ATGANVSQVAFAVGTDSR-------IGP-KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIND 304 (362)
Q Consensus 239 ~~g~d~~~v~~~~~~~~~-------i~~-~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~ 304 (362)
+.|++++++.+++..... ..+ ..+ +..+|+...++.||..++++.+++.|++ .|+.+++.+..+
T Consensus 197 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~~~~~~~ 270 (301)
T 3cky_A 197 KCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHKDLGLALEAGKEGNVP--LPMTAMATQIFE 270 (301)
T ss_dssp HTTCCHHHHHHHHHTSTTCBHHHHHHCCCCCCTCCCSSSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHcCCCCCHHHHHhhhhhhhcCCCCCCccHHHHHHHHHHHHHHHHHhCCC--ChHHHHHHHHHH
Confidence 999999999998875421 011 222 2335778889999999999999999999 787777665543
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=203.30 Aligned_cols=252 Identities=15% Similarity=0.145 Sum_probs=189.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||..+|..|++. |++|++||+++++++.+.+. .+..++++.++++++|+
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~Dv 89 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKM--GHTVTVWNRTAEKCDLFIQE-------------------GARLGRTPAEVVSTCDI 89 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT--TCCEEEECSSGGGGHHHHHT-------------------TCEECSCHHHHHHHCSE
T ss_pred CeEEEEcccHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHc-------------------CCEEcCCHHHHHhcCCE
Confidence 7899999999999999999998 99999999999988877652 23456678787899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHH---HhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVI---ADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i---~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
||+|||+|. .+..++..+ .+.++++++|++.|+..+.+.+.+.+.+.+. +. .++..|.+
T Consensus 90 Vi~av~~~~--------------~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~--~~--~~v~~p~~ 151 (316)
T 2uyy_A 90 TFACVSDPK--------------AAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSR--GG--RFLEAPVS 151 (316)
T ss_dssp EEECCSSHH--------------HHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHT--TC--EEEECCEE
T ss_pred EEEeCCCHH--------------HHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc--CC--EEEEcCcc
Confidence 999998542 345555543 3677889999999998888888887777543 22 23445643
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (362)
..+..... ....+++|++ ++..+.++++|+.++. ..++..+++.+.+.|++.|.+....+++++|+..+++
T Consensus 152 g~~~~~~~---g~~~~~~~g~-----~~~~~~v~~ll~~~g~-~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~ 222 (316)
T 2uyy_A 152 GNQQLSND---GMLVILAAGD-----RGLYEDCSSCFQAMGK-TSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQ 222 (316)
T ss_dssp SCHHHHHH---TCEEEEEEEC-----HHHHHHTHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHhh---CCEEEEeCCC-----HHHHHHHHHHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32221111 1113556764 6788999999999862 3344568899999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 017997 239 ATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIN 303 (362)
Q Consensus 239 ~~g~d~~~v~~~~~~~~~i~~-------~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N 303 (362)
+.|++++++.+++.....-.+ ..+ +..+|+...++.||..++++.+++.|++ .++.+++.++-
T Consensus 223 ~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~v~~~~ 294 (316)
T 2uyy_A 223 VTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHP--TPMAAAANEVY 294 (316)
T ss_dssp HTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHcCCCCCHHHHHhhHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhCCC--ChHHHHHHHHH
Confidence 999999999998875431100 011 2346788889999999999999999999 77777655443
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9.3e-25 Score=214.63 Aligned_cols=207 Identities=13% Similarity=0.164 Sum_probs=166.7
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc---
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--- 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--- 77 (362)
||+|+|||+|.||.+||.+|+++ ||+|++||+++++++.+.+.... ..++..+++++++++
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~--------------g~~i~~~~s~~e~v~~l~ 67 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEAK--------------GTKVVGAQSLKEMVSKLK 67 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTTT--------------TSSCEECSSHHHHHHTBC
T ss_pred CCEEEEEChhHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHhcccC--------------CCceeccCCHHHHHhhcc
Confidence 58999999999999999999999 99999999999999988763211 124566788888765
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
++|+||+|||++ ..+.++++++.+.++++++||+.||..+.+++++.+.+.+. |. .++.+|.
T Consensus 68 ~aDvVil~Vp~~--------------~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~--Gi--~fvd~pV 129 (484)
T 4gwg_A 68 KPRRIILLVKAG--------------QAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAK--GI--LFVGSGV 129 (484)
T ss_dssp SSCEEEECSCSS--------------HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHT--TC--EEEEEEE
T ss_pred CCCEEEEecCCh--------------HHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhh--cc--ccccCCc
Confidence 599999999864 24677889999999999999999999998888777767664 22 3345565
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCc-------EEeCChhHHHHHHHHHhHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDR-------ILTTNLWSAELSKLAANAFLAQRISSV 230 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (362)
...+..+.. .+.+++|++ +++.++++++|+.++. .. ++.++.+.++++|+++|.+.+.+++++
T Consensus 130 sGg~~gA~~----G~~im~GG~-----~ea~~~v~pll~~ig~-~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~i 199 (484)
T 4gwg_A 130 SGGEEGARY----GPSLMPGGN-----KEAWPHIKTIFQGIAA-KVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLI 199 (484)
T ss_dssp ESHHHHHHH----CCEEEEEEC-----GGGHHHHHHHHHHHSC-BCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhc----CCeeecCCC-----HHHHHHHHHHHHHhcC-cccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHH
Confidence 444433322 226788986 6789999999999863 22 456678999999999999999999999
Q ss_pred HHHHHHHHH-hCCCHHHHHHHh
Q 017997 231 NAMSALCEA-TGANVSQVAFAV 251 (362)
Q Consensus 231 nE~~~l~~~-~g~d~~~v~~~~ 251 (362)
+|+..++++ +|+|++++.+++
T Consensus 200 aEa~~l~~~~~Gld~~~l~~v~ 221 (484)
T 4gwg_A 200 CEAYHLMKDVLGMAQDEMAQAF 221 (484)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999 999999998886
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=200.97 Aligned_cols=251 Identities=16% Similarity=0.161 Sum_probs=189.3
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
||||+|||+|.||..+|..|++ |++|++||+++++.+.+.+. ++..++ +.++++++|
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~---g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~-~~~~~~~~D 57 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR---RFPTLVWNRTFEKALRHQEE-------------------FGSEAV-PLERVAEAR 57 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT---TSCEEEECSSTHHHHHHHHH-------------------HCCEEC-CGGGGGGCS
T ss_pred CCeEEEEcccHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHC-------------------CCcccC-HHHHHhCCC
Confidence 7899999999999999999986 68999999999998887642 112233 566688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
+||+|+|++. .+..+++++.+.++++++|++.|+..+.+.+.+.+.+++. + ..++.+|....
T Consensus 58 ~vi~~v~~~~--------------~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~--g--~~~~~~p~~~~ 119 (289)
T 2cvz_A 58 VIFTCLPTTR--------------EVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREK--G--VTYLDAPVSGG 119 (289)
T ss_dssp EEEECCSSHH--------------HHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTT--T--EEEEECCEESH
T ss_pred EEEEeCCChH--------------HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHc--C--CEEEEecCCCC
Confidence 9999998542 3566778888888999999999998888888887777653 2 23445674332
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (362)
+..+.. . ...+++|++ ++..+.++++| .++. ..++..+...+.+.|++.|++.++.+++++|+..++++.
T Consensus 120 ~~~~~~--g-~~~~~~~~~-----~~~~~~~~~ll-~~g~-~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~ 189 (289)
T 2cvz_A 120 TSGAEA--G-TLTVMLGGP-----EEAVERVRPFL-AYAK-KVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQ 189 (289)
T ss_dssp HHHHHH--T-CEEEEEESC-----HHHHHHHGGGC-TTEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHhh--C-CeEEEECCC-----HHHHHHHHHHH-hhcC-CeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 322211 1 113556653 67889999999 8752 245667889999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCC-------CCC-CCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 017997 241 GANVSQVAFAVGTDSR-------IGP-KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIND 304 (362)
Q Consensus 241 g~d~~~v~~~~~~~~~-------i~~-~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~ 304 (362)
|+|++++.+++..... .++ ..+ +..+|+...++.||...+++.++++|++ .++.+++.+.-+
T Consensus 190 G~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~v~~~~~ 261 (289)
T 2cvz_A 190 GVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLGIAMGVLDGEKAP--SPLLRLAREVYE 261 (289)
T ss_dssp TCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHccCCCCHHHHHhccchhhcCCCCCCcChHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHH
Confidence 9999999999876431 111 121 2245777789999999999999999999 787777665543
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.6e-23 Score=202.62 Aligned_cols=252 Identities=12% Similarity=0.102 Sum_probs=186.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC---
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE--- 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (362)
.+|+|||+|.||.+||.+|+++ ||+|++||+++++++.+.++..+ + .++..+++++++++.
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~----~----------~gi~~~~s~~e~v~~l~~ 74 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADH--GFTVCAYNRTQSKVDHFLANEAK----G----------KSIIGATSIEDFISKLKR 74 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSHHHHHHHHTTTT----T----------SSEECCSSHHHHHHTSCS
T ss_pred CCEEEEeeHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHccccc----C----------CCeEEeCCHHHHHhcCCC
Confidence 4899999999999999999999 99999999999999998863211 0 247778888887776
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
+|+||+|||++ ..+.++++++.+.++++++||+.||..+.+++++.+.+++. |..| +..|..
T Consensus 75 aDvVil~Vp~~--------------~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~--g~~~--v~~pVs 136 (497)
T 2p4q_A 75 PRKVMLLVKAG--------------APVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKK--GILF--VGSGVS 136 (497)
T ss_dssp SCEEEECCCSS--------------HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHT--TCEE--EEEEEE
T ss_pred CCEEEEEcCCh--------------HHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHc--CCce--eCCCcc
Confidence 99999999864 24678889999999999999999999888888777777654 2232 344543
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCC------cEEeCChhHHHHHHHHHhHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED------RILTTNLWSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
..|..+.. .+.+++|+. +++.+.++++|+.++. . ..+.+..+.+.++|+++|.+.+..++.++|
T Consensus 137 gg~~~a~~----G~~im~gg~-----~e~~~~v~~ll~~~g~-~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laE 206 (497)
T 2p4q_A 137 GGEEGARY----GPSLMPGGS-----EEAWPHIKNIFQSISA-KSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICE 206 (497)
T ss_dssp SHHHHHHH----CCEEEEEEC-----GGGHHHHHHHHHHHSC-EETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHhhc----CCeEEecCC-----HHHHHHHHHHHHHhcC-ccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332221 224778875 5788999999999863 2 244556789999999999999999999999
Q ss_pred HHHHHHH-hCCCHHHHHHHhc---CCCCCCC------C-Cc--cCCCCCcccChh-----HhHH-HHHHHHHhCCCchhH
Q 017997 233 MSALCEA-TGANVSQVAFAVG---TDSRIGP------K-FL--NASVGFGGSCFQ-----KDIL-NLVYICECNGLPEVA 293 (362)
Q Consensus 233 ~~~l~~~-~g~d~~~v~~~~~---~~~~i~~------~-~~--~~g~g~gg~cl~-----kD~~-~l~~~a~~~g~~~~~ 293 (362)
+..++++ +|+|++++.+++. ...--++ . +. ++.+++--..+. ||+. .....|++.|++ .
T Consensus 207 a~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~~~l~~~d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~--~ 284 (497)
T 2p4q_A 207 AYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDILKFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMP--V 284 (497)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHHHHHTCBCTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCC--C
T ss_pred HHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHHHHHhcCCCCCccHHHHHHHhhccchHHHHHHHHHHHcCCC--C
Confidence 9999999 6999999998883 2210000 0 00 111123333333 7765 677899999999 6
Q ss_pred HHHHHH
Q 017997 294 EYWKQV 299 (362)
Q Consensus 294 ~~~~~~ 299 (362)
|++.++
T Consensus 285 P~~~~a 290 (497)
T 2p4q_A 285 TLIGEA 290 (497)
T ss_dssp HHHHHH
T ss_pred chHHHH
Confidence 776664
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=190.99 Aligned_cols=275 Identities=14% Similarity=0.115 Sum_probs=192.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC--CHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec--CHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI--SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST--DVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~--~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~--d~~~a~~ 77 (362)
|||+|||+|.||.++|..|+++ ||+|++||+ ++++++.+++....... +.. . .++.+++ ++.++++
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~-g~~------~-~~~~~~~~~~~~~~~~ 70 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDN--GNEVRIWGTEFDTEILKSISAGREHPRL-GVK------L-NGVEIFWPEQLEKCLE 70 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH--CCEEEEECCGGGHHHHHHHHTTCCBTTT-TBC------C-CSEEEECGGGHHHHHT
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEEccCCHHHHHHHHHhCcCccc-Ccc------c-cceEEecHHhHHHHHh
Confidence 7999999999999999999999 999999999 99999999875432211 110 0 2456777 7877789
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEee-CC---ccccHHHHHHHHHhccCC-CceEE
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS-TV---PVKTAEAIEKILTHNSKG-IKFQI 152 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~S-Tv---~~gt~~~l~~~l~~~~~g-~~~~v 152 (362)
++|+||+|||++ .+.++++++.+ ++++++|+..+ ++ ++++.+.+.+.+.+..++ ..+.+
T Consensus 71 ~~D~vi~~v~~~---------------~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~ 134 (335)
T 1txg_A 71 NAEVVLLGVSTD---------------GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVA 134 (335)
T ss_dssp TCSEEEECSCGG---------------GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEE
T ss_pred cCCEEEEcCChH---------------HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEE
Confidence 999999999853 25778888988 88899888776 57 778877887777653211 23455
Q ss_pred eeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHH-----------------
Q 017997 153 LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELS----------------- 215 (362)
Q Consensus 153 ~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~----------------- 215 (362)
..+|.+...+.. ..+..+++|+. +++..+.++++|+..+. ..+...|+..++|.
T Consensus 135 ~~~p~~~~~~~~----g~~~~~~~~~~----~~~~~~~~~~ll~~~g~-~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~ 205 (335)
T 1txg_A 135 ITGPAIAREVAK----RMPTTVVFSSP----SESSANKMKEIFETEYF-GVEVTTDIIGTEITSALKNVYSIAIAWIRGY 205 (335)
T ss_dssp EESSCCHHHHHT----TCCEEEEEECS----CHHHHHHHHHHHCBTTE-EEEEESCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCcHHHHHc----cCCcEEEEEeC----CHHHHHHHHHHhCCCcE-EEEecCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667766543221 22334667765 26788999999998652 34456789888887
Q ss_pred HHH-----HhHHHHHHHHHHHHHHHHHHHhCCCHHHHH------HHhcCCCCCCCCC-c--cCCCCCcc----------c
Q 017997 216 KLA-----ANAFLAQRISSVNAMSALCEATGANVSQVA------FAVGTDSRIGPKF-L--NASVGFGG----------S 271 (362)
Q Consensus 216 Kl~-----~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~------~~~~~~~~i~~~~-~--~~g~g~gg----------~ 271 (362)
|+. +|.++++..+.++|+..+++++|+|+.++. +.+.+... +.+. + ..++|+.. +
T Consensus 206 ~~~~l~~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~d~~~~~~~~ 284 (335)
T 1txg_A 206 ESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRG-GRNGMLGELLGKGLSIDEAMEELERRG 284 (335)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTC-HHHHHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcchhhcccchhheeecccc-CccHHHHHHHhCCCCHHHHHHHhccCC
Confidence 555 777888899999999999999999987654 33322110 0000 0 11223311 0
Q ss_pred -Ch---hHhHHHHHHHHHhCCCchhHHHHHHHHHHHHH--hHHHHHHHH
Q 017997 272 -CF---QKDILNLVYICECNGLPEVAEYWKQVIKINDY--QKSRFVNRV 314 (362)
Q Consensus 272 -cl---~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~--~~~~~~~~~ 314 (362)
+. .||..++.+.++++|++ .|+.+.+.++... .|+..++.+
T Consensus 285 ~~~~E~~~~~~~~~~~a~~~gv~--~P~~~~~~~~~~~~~~~~~~~~~l 331 (335)
T 1txg_A 285 VGVVEGYKTAEKAYRLSSKINAD--TKLLDSIYRVLYEGLKVEEVLFEL 331 (335)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred ceecchHHHHHHHHHHHHHcCCC--CcHHHHHHHHHhCCCCHHHHHHHH
Confidence 33 39999999999999999 8998888887765 344444433
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-23 Score=200.60 Aligned_cols=270 Identities=15% Similarity=0.149 Sum_probs=189.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCC-------CeEEEEeCCHH-----HHHHHHcC-CCCCCCCChHHHHhhhcCCCEE
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPS-------IEVAVVDISVS-----RINAWNSD-QLPIYEPGLDGVVKQCRGKNLF 67 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G-------~~V~~~d~~~~-----~~~~l~~~-~~~~~e~~l~~~~~~~~~~~l~ 67 (362)
||||+|||+|.||+++|..|+++ | |+|++||++++ +++.+++. ..+.+.++.. ...++.
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~--G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~i~ 92 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTN--AKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVP------LPHNIV 92 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHH--HHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCB------CCTTEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHc--CCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCccc------CcCCeE
Confidence 47999999999999999999998 8 99999999998 88888763 2333334321 123578
Q ss_pred EecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh----hcCCCCEEEEee-CCcc--ccHHHHHHH
Q 017997 68 FSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD----VSKSDKIVVEKS-TVPV--KTAEAIEKI 140 (362)
Q Consensus 68 ~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~----~l~~~~iVv~~S-Tv~~--gt~~~l~~~ 140 (362)
+++|++++++++|+||+|||+ ..+.++++++.+ .++++++|+..+ ++.+ ++.+.+.+.
T Consensus 93 ~~~~~~ea~~~aDvVilav~~---------------~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~ 157 (375)
T 1yj8_A 93 AHSDLASVINDADLLIFIVPC---------------QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNY 157 (375)
T ss_dssp EESSTHHHHTTCSEEEECCCH---------------HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHH
T ss_pred EECCHHHHHcCCCEEEEcCCH---------------HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHH
Confidence 889988888999999999984 257888899988 888899887766 3666 344455555
Q ss_pred HHhccCCCceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHH--
Q 017997 141 LTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLA-- 218 (362)
Q Consensus 141 l~~~~~g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~-- 218 (362)
+++.. +..+.+..+|.+..+... ..+..+++++. +++..+.++++|+..+. ..+...|+...+|.|++
T Consensus 158 l~~~~-~~~~~v~~gp~~a~~v~~----g~~~~~~~~~~----~~~~~~~v~~ll~~~g~-~~~~~~di~~~~~~k~l~N 227 (375)
T 1yj8_A 158 ISDFL-NIPCSALSGANIAMDVAM----ENFSEATIGGN----DKDSLVIWQRVFDLPYF-KINCVNETIEVEICGALKN 227 (375)
T ss_dssp HHHHS-SSCEEEEECSCCHHHHHT----TCCEEEEEECS----CHHHHHHHHHHHCBTTE-EEEEESCSHHHHHHHHHHH
T ss_pred HHHHc-CCCEEEEeCCchHHHHHh----CCCeEEEEecC----CHHHHHHHHHHhCCCCe-EEEEeCCcHHHHHHHHHHH
Confidence 55432 234566778876543221 23334555655 26788999999998652 24456788888998876
Q ss_pred ---------------HhHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHhc--------CCCC---CCCCCccCC--CCC
Q 017997 219 ---------------ANAFLAQRISSVNAMSALCEAT--GANVSQVAFAVG--------TDSR---IGPKFLNAS--VGF 268 (362)
Q Consensus 219 ---------------~N~~~~~~ia~~nE~~~l~~~~--g~d~~~v~~~~~--------~~~~---i~~~~~~~g--~g~ 268 (362)
.|.++++..++++|+..++++. |+|++++.++.+ ...+ ++..+..+| ..+
T Consensus 228 ~~~~~~g~~~~~~~~~n~~~a~~~~~~~E~~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~~~~~~~~~~~~~~g~~~~~ 307 (375)
T 1yj8_A 228 IITLACGFCDGLNLPTNSKSAIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSFLAGRNAKCSAEFIKSTPKKTW 307 (375)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGGGSTTTHHHHHHHHSSSSHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHhccCCCcchhhccccccceeEeeeCCccHHHHHHHHhcCCCCCH
Confidence 4557888999999999999999 699877643211 1111 110010101 111
Q ss_pred c--------ccCh--hHhHHHHHHHHHhCCC--chhHHHHHHHHHHHHH
Q 017997 269 G--------GSCF--QKDILNLVYICECNGL--PEVAEYWKQVIKINDY 305 (362)
Q Consensus 269 g--------g~cl--~kD~~~l~~~a~~~g~--~~~~~~~~~~~~~N~~ 305 (362)
. |.+. .+|..++.+.++++|+ + .|+.+.+.++...
T Consensus 308 ~d~~~~~~~g~~~E~~~~~~~v~~~a~~~gv~~~--~P~~~~v~~~~~~ 354 (375)
T 1yj8_A 308 EELENEILKGQKLQGTVTLKYVYHMIKEKNMTNE--FPLFTVLHKISFE 354 (375)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCGGG--CHHHHHHHHHHHS
T ss_pred HHHHHhhcCCcEeeHHHHHHHHHHHHHHhCCCCC--CCHHHHHHHHHhC
Confidence 1 4444 8999999999999999 8 8888888877653
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=201.84 Aligned_cols=278 Identities=17% Similarity=0.169 Sum_probs=192.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
||+|||+|.||.++|..|+++ ||+|++||+++++++.+++.. .+.+.++.. ...++.++++++++++++|+
T Consensus 17 kI~iIG~G~mG~~la~~L~~~--G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~aDv 88 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKK--CREVCVWHMNEEEVRLVNEKRENVLFLKGVQ------LASNITFTSDVEKAYNGAEI 88 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTT--EEEEEEECSCHHHHHHHHHHTBCTTTSTTCB------CCTTEEEESCHHHHHTTCSS
T ss_pred eEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHcCcccccccccc------cccceeeeCCHHHHHcCCCE
Confidence 999999999999999999998 999999999999999887643 222333321 12357888899888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHH----HHhhcCC-CCEEEEee-CCccccHHHHHHHHHhccCCCceEEeeC
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARV----IADVSKS-DKIVVEKS-TVPVKTAEAIEKILTHNSKGIKFQILSN 155 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~----i~~~l~~-~~iVv~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (362)
||+|||+ ..+.+++++ +.+.+++ +++|+..+ ++.+.+.+.+.+.+.+..++..+.+..+
T Consensus 89 Vilav~~---------------~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~g 153 (366)
T 1evy_A 89 ILFVIPT---------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAG 153 (366)
T ss_dssp EEECCCH---------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEES
T ss_pred EEECCCh---------------HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeC
Confidence 9999984 246778888 8888887 88887766 5777766666666655322223456677
Q ss_pred CcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhcc--CCCCcEEeCChhHHHHHHHH---------------
Q 017997 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHW--VPEDRILTTNLWSAELSKLA--------------- 218 (362)
Q Consensus 156 Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~ae~~Kl~--------------- 218 (362)
|.+..+... ..+..+++++. +++..+.++++|+.. +. ..+...|+...+|.|++
T Consensus 154 p~~~~~~~~----g~~~~~~~~~~----~~~~~~~v~~ll~~~g~g~-~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~ 224 (366)
T 1evy_A 154 PSFAIEVAT----GVFTCVSIASA----DINVARRLQRIMSTGDRSF-VCWATTDTVGCEVASAVKNVLAIGSGVANGLG 224 (366)
T ss_dssp SCCHHHHHT----TCCEEEEEECS----SHHHHHHHHHHHSCTTSSE-EEEEESCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHh----CCceEEEEecC----CHHHHHHHHHHhcCCCCeE-EEEEcCCchHHHHHHHHHhHHHHHHHHHhhcc
Confidence 776543211 22333455654 267889999999987 42 23445788888888775
Q ss_pred --HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc--------CCCCCCCCC-----ccCCCCCc------ccC--hhH
Q 017997 219 --ANAFLAQRISSVNAMSALCEATGANVSQVAFAVG--------TDSRIGPKF-----LNASVGFG------GSC--FQK 275 (362)
Q Consensus 219 --~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~--------~~~~i~~~~-----~~~g~g~g------g~c--l~k 275 (362)
+|.++++.+++++|+..++++.|+|++++.++.+ ..+ ...++ +..|..+. +.+ ..|
T Consensus 225 ~~~n~~~~~~~~~~~E~~~la~a~Gi~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~ 303 (366)
T 1evy_A 225 MGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSE-LSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVA 303 (366)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCCTTTTSTTTHHHHHHHHTCT-TSHHHHHHHHHHTTCCHHHHHC---CCCHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhCCCCccccccccchhheeeecCC-CCchHHHHHHHhCCCCHHHHHHHcCCeeehHH
Confidence 4557788899999999999999999866543211 111 00000 00011111 223 359
Q ss_pred hHHHHHHHHHhCCCchhHHHHHHHHHHHHH--hHHHHHHHHH
Q 017997 276 DILNLVYICECNGLPEVAEYWKQVIKINDY--QKSRFVNRVV 315 (362)
Q Consensus 276 D~~~l~~~a~~~g~~~~~~~~~~~~~~N~~--~~~~~~~~~~ 315 (362)
|..++.+.++++|++ .|+.+.+.++... .|+..++.++
T Consensus 304 ~~~~v~~~a~~~gv~--~P~~~~v~~~~~~~~~~~~~~~~l~ 343 (366)
T 1evy_A 304 TADPLMRLAKQLKVK--MPLCHQIYEIVYKKKNPRDALADLL 343 (366)
T ss_dssp HHHHHHHHHHHHTCC--CHHHHHHHHHHHSCCCHHHHHHHHG
T ss_pred HHHHHHHHHHHhCCC--CcHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999999999999999 8999988887765 4566666554
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-22 Score=196.76 Aligned_cols=249 Identities=12% Similarity=0.122 Sum_probs=181.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh---cC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV---SE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~---~~ 78 (362)
|||+|||+|.||.++|..|+++ ||+|++||+++++++.++++..+ + .++..++++++++ ++
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~----g----------~gi~~~~~~~e~v~~l~~ 66 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEAK----G----------TKVLGAHSLEEMVSKLKK 66 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTTT----T----------SSCEECSSHHHHHHHBCS
T ss_pred CeEEEEChHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHhcccc----C----------CCeEEeCCHHHHHhhccC
Confidence 7999999999999999999999 99999999999999998863211 1 1366778888866 48
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
+|+||+|||++. .+.++++++.+.++++++||+.|+..+..++++.+.+++. |.. ++.+|..
T Consensus 67 aDvVilaVp~~~--------------~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~--g~~--~v~~pv~ 128 (482)
T 2pgd_A 67 PRRIILLVKAGQ--------------AVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDK--GIL--FVGSGVS 128 (482)
T ss_dssp SCEEEECSCTTH--------------HHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHT--TCE--EEEEEEE
T ss_pred CCEEEEeCCChH--------------HHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHc--CCe--EeCCCCC
Confidence 999999998642 4677888999999999999998887777676776666653 222 2345543
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCc-------EEeCChhHHHHHHHHHhHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDR-------ILTTNLWSAELSKLAANAFLAQRISSVN 231 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (362)
..+..+ ..++.+++|++ ++..+.++++|+.++. .. .+.+..+.+.+.|+++|.+.+..+++++
T Consensus 129 g~~~~a----~~g~~i~~gg~-----~e~~~~v~~ll~~~g~-~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~ 198 (482)
T 2pgd_A 129 GGEDGA----RYGPSLMPGGN-----KEAWPHIKAIFQGIAA-KVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLIC 198 (482)
T ss_dssp SHHHHH----HHCCEEEEEEC-----TTTHHHHHHHHHHHSC-BCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhh----ccCCeEEeCCC-----HHHHHHHHHHHHHhhh-hccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 333222 12225677875 4678889999998863 22 3445678899999999999999999999
Q ss_pred HHHHHHHHh-CCCHHHHHHHhc---CCCCCCC-------CCc---cCCCCCcccCh------hHhHHHHHHHHHhCCCch
Q 017997 232 AMSALCEAT-GANVSQVAFAVG---TDSRIGP-------KFL---NASVGFGGSCF------QKDILNLVYICECNGLPE 291 (362)
Q Consensus 232 E~~~l~~~~-g~d~~~v~~~~~---~~~~i~~-------~~~---~~g~g~gg~cl------~kD~~~l~~~a~~~g~~~ 291 (362)
|+..++++. |++++++.++++ ... .++ ..+ ++.+++--.-+ .+|...+...|+++|++
T Consensus 199 Ea~~l~~~~~G~~~~~~~~~~~~w~~g~-~~S~l~~~~~~~l~~~d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~- 276 (482)
T 2pgd_A 199 EAYHLMKDVLGLGHKEMAKAFEEWNKTE-LDSFLIEITASILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVP- 276 (482)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHTTTT-TCBHHHHHHHHHHHCBCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHhcCCcCHHHHHHHHHHhcCCC-cCchHHHHHhHHhhccCCCCCeeecccccccccccHHHHHHHHHHHcCCC-
Confidence 999999999 999999999885 211 111 001 11112211111 34556788999999999
Q ss_pred hHHHHH
Q 017997 292 VAEYWK 297 (362)
Q Consensus 292 ~~~~~~ 297 (362)
.|++.
T Consensus 277 -~P~i~ 281 (482)
T 2pgd_A 277 -VTLIG 281 (482)
T ss_dssp -CHHHH
T ss_pred -cchHH
Confidence 77775
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=183.09 Aligned_cols=235 Identities=13% Similarity=0.102 Sum_probs=167.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC--CHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI--SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~--~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|.||.++|..|+++ ||+|++||+ ++++++.+.+. .++ ++++++++++
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~--g~~V~~~~~~~~~~~~~~~~~~-------------------g~~--~~~~~~~~~a 57 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSR--GVEVVTSLEGRSPSTIERARTV-------------------GVT--ETSEEDVYSC 57 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT--TCEEEECCTTCCHHHHHHHHHH-------------------TCE--ECCHHHHHTS
T ss_pred CeEEEEechHHHHHHHHHHHHC--CCeEEEeCCccCHHHHHHHHHC-------------------CCc--CCHHHHHhcC
Confidence 7999999999999999999998 999999999 78888776541 123 5566778999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|+||+|||++. . .+.+.++.+.+++ +|++.||+.+.+.+.+.+.+++. | ++.+|...
T Consensus 58 Dvvi~~v~~~~--------------~-~~~~~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~--g----~~~~~v~~ 114 (264)
T 1i36_A 58 PVVISAVTPGV--------------A-LGAARRAGRHVRG--IYVDINNISPETVRMASSLIEKG--G----FVDAAIMG 114 (264)
T ss_dssp SEEEECSCGGG--------------H-HHHHHHHHTTCCS--EEEECSCCCHHHHHHHHHHCSSS--E----EEEEEECS
T ss_pred CEEEEECCCHH--------------H-HHHHHHHHHhcCc--EEEEccCCCHHHHHHHHHHHhhC--C----eeeeeeeC
Confidence 99999998542 1 2234567777766 88888899888877777666542 1 12233222
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCC-hhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN-LWSAELSKLAANAFLAQRISSVNAMSALCE 238 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (362)
.+..+.. .. . +++|+++ . +.+++ |+.++. ..+...+ ++.+++.|++.|.+.+..+++++|+..+++
T Consensus 115 ~~~~~~~--g~-~-~~~~g~~----~---~~~~~-l~~~g~-~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~ 181 (264)
T 1i36_A 115 SVRRKGA--DI-R-IIASGRD----A---EEFMK-LNRYGL-NIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAH 181 (264)
T ss_dssp CHHHHGG--GC-E-EEEESTT----H---HHHHG-GGGGTC-EEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ccccccc--CC-e-EEecCCc----H---HHhhh-HHHcCC-eeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211111 12 2 5677652 2 67788 998862 2344554 899999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCCCCCCCc---------cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 017997 239 ATGANVSQVAFAVGTDSRIGPKFL---------NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIND 304 (362)
Q Consensus 239 ~~g~d~~~v~~~~~~~~~i~~~~~---------~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~ 304 (362)
+.|+|.+ +.+.+.... +..+. ...+|+. ..||+..+.+.+++. ++ .++.+++.+.-+
T Consensus 182 ~~G~~~~-~~~~~~~~~--g~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~a~~~-v~--~p~~~~v~~~~~ 247 (264)
T 1i36_A 182 RLGLEED-VLEMLEYTE--GNDFRESAISRLKSSCIHARR---RYEEMKEVQDMLAEV-ID--PVMPTCIIRIFD 247 (264)
T ss_dssp HTTCHHH-HHHHHHTTS--CSSTHHHHHHHHHHHHHTHHH---HHHHHHHHHHHHHTT-SC--CSHHHHHHHHHH
T ss_pred HcCCcHH-HHHHHHHhc--CccHHHHHHHHhcCCCCcchh---hHHHHHHHHHHHHHh-cC--chHHHHHHHHHH
Confidence 9999986 777776532 21111 1123332 679999999999999 98 777777655443
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-23 Score=194.47 Aligned_cols=268 Identities=16% Similarity=0.158 Sum_probs=184.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-------CeEEEEeCCHH-----HHHHHHcCC-CCCCCCChHHHHhhhcCCCEEE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-------IEVAVVDISVS-----RINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFF 68 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-------~~V~~~d~~~~-----~~~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~ 68 (362)
|||+|||+|.||.++|..|+++ | |+|++||++++ +.+.+++.+ ...+.++.. ...++.+
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~--g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~ 80 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGN--AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHK------LPPNVVA 80 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH--HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCC------CCTTEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCccc------CccCeEE
Confidence 7999999999999999999998 8 99999999998 888887532 222223211 1235788
Q ss_pred ecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-Cc--cccHHHHHHHHHhcc
Q 017997 69 STDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VP--VKTAEAIEKILTHNS 145 (362)
Q Consensus 69 t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~--~gt~~~l~~~l~~~~ 145 (362)
+++++++++++|+||+|||++ .+.++++++.++++++++|+..++ +. +++.+.+.+.+++..
T Consensus 81 ~~~~~~~~~~aD~Vilav~~~---------------~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~ 145 (354)
T 1x0v_A 81 VPDVVQAAEDADILIFVVPHQ---------------FIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERL 145 (354)
T ss_dssp ESSHHHHHTTCSEEEECCCGG---------------GHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHH
T ss_pred EcCHHHHHcCCCEEEEeCCHH---------------HHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHc
Confidence 889888889999999999842 357888999999998998877665 54 454444544444332
Q ss_pred CCCceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHH-------
Q 017997 146 KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLA------- 218 (362)
Q Consensus 146 ~g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~------- 218 (362)
+.++.+..+|.+..+... ..+..+++++. +++..+.++++|+..+. ..+...|+...+|.|++
T Consensus 146 -~~~~~v~~gp~~a~~v~~----g~~~~~~~~~~----~~~~~~~v~~ll~~~g~-~~~~~~di~~~~~~k~~~N~~~~~ 215 (354)
T 1x0v_A 146 -GIPMSVLMGANIASEVAD----EKFCETTIGCK----DPAQGQLLKELMQTPNF-RITVVQEVDTVEICGALKNVVAVG 215 (354)
T ss_dssp -TCCEEEEECSCCHHHHHT----TCCEEEEEECS----SHHHHHHHHHHHCBTTE-EEEEESCHHHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEECCCcHHHHHh----cCCceEEEEEC----CHHHHHHHHHHhCCCCE-EEEEcCCchHhHHHHHHHHHHHHH
Confidence 223556677876543111 22334556655 36788999999998652 23456788889999887
Q ss_pred ----------HhHHHHHHHHHHHHHHHHHHHhCC---CHHHHHHHh------cC--CCC---CCCCCccCCCCCc-----
Q 017997 219 ----------ANAFLAQRISSVNAMSALCEATGA---NVSQVAFAV------GT--DSR---IGPKFLNASVGFG----- 269 (362)
Q Consensus 219 ----------~N~~~~~~ia~~nE~~~l~~~~g~---d~~~v~~~~------~~--~~~---i~~~~~~~g~g~g----- 269 (362)
.|.++++....++|+..++++.|+ +++++.+.. .+ ..+ ++..+..++..+.
T Consensus 216 ~g~~~~~~~~~n~~~~~~~~~~~E~~~la~a~G~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (354)
T 1x0v_A 216 AGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKE 295 (354)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGGGSTTTHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHccCCccHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHHhhcccccHHHHHHHHhcCCCHHHHHHh
Confidence 666778899999999999999998 876653221 10 000 1111111011111
Q ss_pred ---ccC--hhHhHHHHHHHHHhCCC--chhHHHHHHHHHHHH
Q 017997 270 ---GSC--FQKDILNLVYICECNGL--PEVAEYWKQVIKIND 304 (362)
Q Consensus 270 ---g~c--l~kD~~~l~~~a~~~g~--~~~~~~~~~~~~~N~ 304 (362)
|.+ ..||..++.+.++++|+ + .|+.+.+.++..
T Consensus 296 ~~~g~~~E~~~~~g~v~~~a~~~gv~~~--~P~~~~v~~~~~ 335 (354)
T 1x0v_A 296 LLNGQKLQGPETARELYSILQHKGLVDK--FPLFMAVYKVCY 335 (354)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHHHTCGGG--SHHHHHHHHHHH
T ss_pred hcCCcEeehHHHHHHHHHHHHHhCCCCC--CCHHHHHHHHHh
Confidence 333 37999999999999999 8 788887776654
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-21 Score=191.65 Aligned_cols=256 Identities=16% Similarity=0.124 Sum_probs=183.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-CCCCCCCChHHHHhhhcCCCEEEecCHHhhhc---
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-QLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--- 77 (362)
|||+|||+|.||.++|..|+++ ||+|++||+++++++.+++. ... +. ..++..+++++++++
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~g~~---~~---------~~~i~~~~~~~e~v~~l~ 67 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEK--GFKVAVFNRTYSKSEEFMKANASA---PF---------AGNLKAFETMEAFAASLK 67 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHTTTS---TT---------GGGEEECSCHHHHHHHBC
T ss_pred CEEEEEChHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhcCCC---CC---------CCCeEEECCHHHHHhccc
Confidence 7999999999999999999999 99999999999999988752 111 10 013677888888766
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
++|+||+|||++ ..+.++++++.+.++++++||+.|+..+..++++.+.+++. |.. ++..|.
T Consensus 68 ~aDvVilaVp~~--------------~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~--g~~--~v~~pv 129 (478)
T 1pgj_A 68 KPRKALILVQAG--------------AATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAA--GLR--FLGMGI 129 (478)
T ss_dssp SSCEEEECCCCS--------------HHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTT--TCE--EEEEEE
T ss_pred CCCEEEEecCCh--------------HHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHC--CCe--EEEeec
Confidence 499999999864 14677888999999999999998887777777776666653 222 223443
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCC------cEEeCChhHHHHHHHHHhHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED------RILTTNLWSAELSKLAANAFLAQRISSVN 231 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (362)
...+..+. ..+.+++|+. ++..+.++++|+.++... ..+.++.+.+.+.|+++|.+.+..+++++
T Consensus 130 ~gg~~~a~----~g~~i~~gg~-----~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~ 200 (478)
T 1pgj_A 130 SGGEEGAR----KGPAFFPGGT-----LSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWG 200 (478)
T ss_dssp ESHHHHHH----HCCEEEEEEC-----HHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHh----cCCeEeccCC-----HHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHH
Confidence 32221111 1124777875 678999999999886310 34556778999999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHhc----CCCC------CCCCCc-cCC-CC-CcccChh-----HhH-HHHHHHHHhCCCchh
Q 017997 232 AMSALCEATGANVSQVAFAVG----TDSR------IGPKFL-NAS-VG-FGGSCFQ-----KDI-LNLVYICECNGLPEV 292 (362)
Q Consensus 232 E~~~l~~~~g~d~~~v~~~~~----~~~~------i~~~~~-~~g-~g-~gg~cl~-----kD~-~~l~~~a~~~g~~~~ 292 (362)
|+..+++++|++++++.+++. .... +....+ .-. .| +--..+. ||+ ..+.+.|+++|++
T Consensus 201 Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~~s~l~~~~~~~l~~~d~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~-- 278 (478)
T 1pgj_A 201 EVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVP-- 278 (478)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhccCCCcCchHHHhhchhhhcCCCCChhHHHHHHHHhcCccHHHHHHHHHHHhCCC--
Confidence 999999999999999998875 2110 000011 111 12 2112222 444 6899999999999
Q ss_pred HHHHHHHH
Q 017997 293 AEYWKQVI 300 (362)
Q Consensus 293 ~~~~~~~~ 300 (362)
.|+++++.
T Consensus 279 ~Pi~~~av 286 (478)
T 1pgj_A 279 APSLNMAV 286 (478)
T ss_dssp CHHHHHHH
T ss_pred ChHHHHHH
Confidence 78888743
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.8e-22 Score=195.71 Aligned_cols=251 Identities=13% Similarity=0.125 Sum_probs=184.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC---
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE--- 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (362)
|+|+|||+|.||.++|..|+++ |++|++||+++++++.+++... ..++..+++++++++.
T Consensus 16 ~~IgvIGlG~MG~~lA~~La~~--G~~V~v~~r~~~~~~~l~~~~~---------------~~gi~~~~s~~e~v~~l~~ 78 (480)
T 2zyd_A 16 QQIGVVGMAVMGRNLALNIESR--GYTVSIFNRSREKTEEVIAENP---------------GKKLVPYYTVKEFVESLET 78 (480)
T ss_dssp BSEEEECCSHHHHHHHHHHHTT--TCCEEEECSSHHHHHHHHHHST---------------TSCEEECSSHHHHHHTBCS
T ss_pred CeEEEEccHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHhhCC---------------CCCeEEeCCHHHHHhCCCC
Confidence 6899999999999999999999 9999999999999998875210 0147788899887776
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
+|+||+|||++. .+.++++++.+.++++++||+.|+..+.+++++.+.+++. |.. ++..|..
T Consensus 79 aDvVil~Vp~~~--------------~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~--g~~--~v~~pv~ 140 (480)
T 2zyd_A 79 PRRILLMVKAGA--------------GTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAE--GFN--FIGTGVS 140 (480)
T ss_dssp SCEEEECSCSSS--------------HHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHT--TCE--EEEEEEE
T ss_pred CCEEEEECCCHH--------------HHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHC--CCC--eeCCccc
Confidence 999999998642 3678889999999999999999998877777777777654 222 2345544
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCC-------cEEeCChhHHHHHHHHHhHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-------RILTTNLWSAELSKLAANAFLAQRISSVN 231 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (362)
..|..+.. .+ .+++|+. ++..+.++++|+.++. . ..+.+..+.+.+.|++.|.+.+..+..++
T Consensus 141 gg~~~a~~---g~-~i~~gg~-----~~~~~~v~~ll~~~g~-~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~la 210 (480)
T 2zyd_A 141 GGEEGALK---GP-SIMPGGQ-----KEAYELVAPILTKIAA-VAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIA 210 (480)
T ss_dssp SHHHHHHH---CC-EEEEESC-----HHHHHHHHHHHHHHSC-BCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHhHHhc---CC-eEEecCC-----HHHHHHHHHHHHHHhc-cccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHH
Confidence 33333322 12 5778875 7889999999999863 2 34556789999999999999999999999
Q ss_pred HHHHHHHH-hCCCHHHHHHHh-----c-CCCCC----CCCC--ccCCCCCcccChh-----HhHH-HHHHHHHhCCCchh
Q 017997 232 AMSALCEA-TGANVSQVAFAV-----G-TDSRI----GPKF--LNASVGFGGSCFQ-----KDIL-NLVYICECNGLPEV 292 (362)
Q Consensus 232 E~~~l~~~-~g~d~~~v~~~~-----~-~~~~i----~~~~--~~~g~g~gg~cl~-----kD~~-~l~~~a~~~g~~~~ 292 (362)
|+..++++ +|+|++++.+++ + .++.+ +... -+++.|+--.-+- ||.. .....|++.|++
T Consensus 211 Ea~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l~~~d~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~-- 288 (480)
T 2zyd_A 211 EAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEP-- 288 (480)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHHHHHHCBCTTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCC--
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHHHHHhcCCCCCcchHHHHHHHhcCchHHHHHHHHHHHcCCC--
Confidence 99999999 799999999887 2 11110 0000 0112222222111 4433 677889999998
Q ss_pred HHHHHHH
Q 017997 293 AEYWKQV 299 (362)
Q Consensus 293 ~~~~~~~ 299 (362)
.|+++++
T Consensus 289 ~Pi~~~a 295 (480)
T 2zyd_A 289 LSLITES 295 (480)
T ss_dssp CHHHHHH
T ss_pred CchHHHH
Confidence 7777664
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=192.80 Aligned_cols=249 Identities=12% Similarity=0.159 Sum_probs=181.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC---
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE--- 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (362)
|+|+|||+|.||.++|..|+++ |++|++||+++++++.+.+... ..++..+++++++++.
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~---------------~~gi~~~~s~~e~v~~l~~ 68 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESR--GYTVAIYNRTTSKTEEVFKEHQ---------------DKNLVFTKTLEEFVGSLEK 68 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHTT---------------TSCEEECSSHHHHHHTBCS
T ss_pred CcEEEEeeHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHHHHhCc---------------CCCeEEeCCHHHHHhhccC
Confidence 6899999999999999999999 9999999999999998875210 0146778888887765
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
+|+||+|||++ ..+.++++++.+.++++++|++.|+..+..++++.+.+++. |.. ++..|..
T Consensus 69 aDvVilavp~~--------------~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~--g~~--~v~~pv~ 130 (474)
T 2iz1_A 69 PRRIMLMVQAG--------------AATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADS--GIN--FIGTGVS 130 (474)
T ss_dssp SCEEEECCCTT--------------HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTS--SCE--EEEEEEC
T ss_pred CCEEEEEccCc--------------hHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHC--CCe--EECCCCC
Confidence 99999999864 24677888999999999999998887776666666655543 222 2345543
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCC-------cEEeCChhHHHHHHHHHhHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-------RILTTNLWSAELSKLAANAFLAQRISSVN 231 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (362)
..+..+..+ + .+++|+. ++..+.++++|+.++... ..+.++.+.+.+.|+++|.+.+..++.++
T Consensus 131 gg~~~a~~g---~-~i~~gg~-----~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~la 201 (474)
T 2iz1_A 131 GGEKGALLG---P-SMMPGGQ-----KEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIA 201 (474)
T ss_dssp SHHHHHHHC---C-CEEEEEC-----HHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhccC---C-eEEecCC-----HHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHH
Confidence 333222221 2 3677874 788999999999986320 23456788999999999999999999999
Q ss_pred HHHHHHHH-hCCCHHHHHHHhc---CCCCCCC-------C-Cc--cCCCCCcccChh--------HhHH-HHHHHHHhCC
Q 017997 232 AMSALCEA-TGANVSQVAFAVG---TDSRIGP-------K-FL--NASVGFGGSCFQ--------KDIL-NLVYICECNG 288 (362)
Q Consensus 232 E~~~l~~~-~g~d~~~v~~~~~---~~~~i~~-------~-~~--~~g~g~gg~cl~--------kD~~-~l~~~a~~~g 288 (362)
|+..++++ +|++++++.+++. ... .++ . +. ++.+| ...+. ||.. .....+++.|
T Consensus 202 Ea~~l~~~~~Gl~~~~~~~l~~~w~~g~-~~s~l~~~~~~~l~~~d~~~g--~~~vd~i~D~~~~k~tG~~~~~~A~~~g 278 (474)
T 2iz1_A 202 ESYDLLKRILGLSNAEIQAIFEEWNEGE-LDSYLIEITKEVLKRKDDEGE--GYIVDKILDKAGNKGTGKWTSESALDLG 278 (474)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHTTTT-TCBHHHHHHHHHTTCBCSSSS--SBGGGGBCSCCCCCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhcCCC-ccccHHHhhhhHhhcCCCCCC--hhHHHHHHHhhcccchHHHHHHHHHHcC
Confidence 99999999 8999999988883 111 110 0 11 12222 12333 6655 5778999999
Q ss_pred CchhHHHHHHH
Q 017997 289 LPEVAEYWKQV 299 (362)
Q Consensus 289 ~~~~~~~~~~~ 299 (362)
++ .|+++++
T Consensus 279 v~--~P~~~~a 287 (474)
T 2iz1_A 279 VP--LPLITES 287 (474)
T ss_dssp CC--CHHHHHH
T ss_pred CC--CchHHHH
Confidence 99 6777664
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-22 Score=189.39 Aligned_cols=259 Identities=15% Similarity=0.158 Sum_probs=178.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||+++|..|+++ ||+|++||+++++++.+++.+...++++.. . ++.+++++++ ++++|+
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~--G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~-------~-~~~~~~~~~~-~~~aDv 83 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHEN--GEEVILWARRKEIVDLINVSHTSPYVEESK-------I-TVRATNDLEE-IKKEDI 83 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHSCBTTBTTCC-------C-CSEEESCGGG-CCTTEE
T ss_pred CcEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCcccCCCCe-------e-eEEEeCCHHH-hcCCCE
Confidence 7999999999999999999999 999999999999999998744322334332 0 3677888888 899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEee-CCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS-TVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
||+|||++ ++.++++++.+ ++++|+..+ ++.+.+.+.+.+.+.+... .++.+..+|.+..
T Consensus 84 Vil~vk~~---------------~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~-~~~~~~~~P~~~~ 144 (335)
T 1z82_A 84 LVIAIPVQ---------------YIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG-CPYAVLSGPSHAE 144 (335)
T ss_dssp EEECSCGG---------------GHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC-CCEEEEESSCCHH
T ss_pred EEEECCHH---------------HHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC-CceEEEECCccHH
Confidence 99999842 35666666544 678888777 4777666666666654322 2345667776654
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhH-----------------HH
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA-----------------FL 223 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~-----------------~~ 223 (362)
+... ..+..+++|+. + .+.++++|+..+. ..+...|+...+|.|++-|. ++
T Consensus 145 ~~~~----g~~~~~~~g~~-----~--~~~~~~ll~~~g~-~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~ 212 (335)
T 1z82_A 145 EVAK----KLPTAVTLAGE-----N--SKELQKRISTEYF-RVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKA 212 (335)
T ss_dssp HHHT----TCCEEEEEEET-----T--HHHHHHHHCCSSE-EEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhC----CCceEEEEEeh-----h--HHHHHHHhCCCCE-EEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHH
Confidence 3221 22334556644 2 6788999998652 23445788888888766554 45
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHhcC--------CC--C---CCCCCccCCCCCc------ccCh--hHhHHHHHH
Q 017997 224 AQRISSVNAMSALCEATGANVSQVAFAVGT--------DS--R---IGPKFLNASVGFG------GSCF--QKDILNLVY 282 (362)
Q Consensus 224 ~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~--------~~--~---i~~~~~~~g~g~g------g~cl--~kD~~~l~~ 282 (362)
++..++++|+..++++.|+|++++.++.+. ++ + ++..+ ..|..+. |.+. .||..++.+
T Consensus 213 a~~~~~~~E~~~la~a~G~~~~~~~~l~~~~~~~~t~~s~~~~n~~~~~~~-~~g~~~~~~~~~~g~~~e~~~~~~~v~~ 291 (335)
T 1z82_A 213 ALETRGIYEIARFGMFFGADQKTFMGLAGIGDLMVTCNSRYSRNRRFGELI-ARGFNPLKLLESSNQVVEGAFTVKAVMK 291 (335)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHH-HHTCCHHHHHHTCSSCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChhhhcccccccceeeeccCccCcHHHHHHHH-hCCCCHHHHHHhcCCeeeHHHHHHHHHH
Confidence 778899999999999999999887543211 11 0 01000 0011111 3333 599999999
Q ss_pred HHHhCCCchhHHHHHHHHHHHHH
Q 017997 283 ICECNGLPEVAEYWKQVIKINDY 305 (362)
Q Consensus 283 ~a~~~g~~~~~~~~~~~~~~N~~ 305 (362)
+++++|++ .|+.+++.++...
T Consensus 292 ~a~~~gv~--~P~~~~v~~~~~~ 312 (335)
T 1z82_A 292 IAKENKID--MPISEEVYRVVYE 312 (335)
T ss_dssp HHHHTTCC--CHHHHHHHHHHHS
T ss_pred HHHHhCCC--CcHHHHHHHHHhC
Confidence 99999999 8888888877653
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-21 Score=181.31 Aligned_cols=268 Identities=13% Similarity=0.099 Sum_probs=173.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh---hc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH---VS 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a---~~ 77 (362)
||||+|||+|.||.++|..|+++ ||+|++||+++++++.+++........+. . ...++.++++ .++ ++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~~~~~~~~~~g~~~~~~~~-~-----~~~~~~~~~~-~~~~~~~~ 73 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQG--GNDVTLIDQWPAHIEAIRKNGLIADFNGE-E-----VVANLPIFSP-EEIDHQNE 73 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHCEEEEETTE-E-----EEECCCEECG-GGCCTTSC
T ss_pred CCeEEEECcCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHhCCEEEEeCCC-e-----eEecceeecc-hhhcccCC
Confidence 58999999999999999999999 99999999999999988764322111000 0 0012233332 232 34
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
++|+||+|||++ .+.++++++.+.++++++|+..++ ..++.+.+.+.+.+... ..-......+
T Consensus 74 ~~d~vi~~v~~~---------------~~~~v~~~l~~~l~~~~~iv~~~~-g~~~~~~l~~~~~~~~v-i~g~~~~~~~ 136 (316)
T 2ew2_A 74 QVDLIIALTKAQ---------------QLDAMFKAIQPMITEKTYVLCLLN-GLGHEDVLEKYVPKENI-LVGITMWTAG 136 (316)
T ss_dssp CCSEEEECSCHH---------------HHHHHHHHHGGGCCTTCEEEECCS-SSCTHHHHTTTSCGGGE-EEEEECCCCE
T ss_pred CCCEEEEEeccc---------------cHHHHHHHHHHhcCCCCEEEEecC-CCCcHHHHHHHcCCccE-EEEEeeeeeE
Confidence 899999999842 357888999999999998887655 33444555444433210 0001112344
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHH---------------
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF--------------- 222 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~--------------- 222 (362)
+.+|+..... ... .+.++... ..+++..+.++++|+..+. ..+...|+..++|.|++.|..
T Consensus 137 ~~~p~~~~~~-~~g-~~~i~~~~-~~~~~~~~~~~~ll~~~g~-~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~ 212 (316)
T 2ew2_A 137 LEGPGRVKLL-GDG-EIELENID-PSGKKFALEVVDVFQKAGL-NPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEF 212 (316)
T ss_dssp EEETTEEEEC-SCC-CEEEEESS-GGGHHHHHHHHHHHHHTTC-CEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHH
T ss_pred EcCCCEEEEe-cCC-cEEEeecC-CCccHHHHHHHHHHHhCCC-CcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHH
Confidence 5556554332 222 23344321 1246788999999999863 344567999999999999964
Q ss_pred ------HHHHHHHHHHHHHHHHHhCCCH--HHHHHHhcC--CCC-CCCCC----ccC-CCCCcccChhHhHHHHHHHHHh
Q 017997 223 ------LAQRISSVNAMSALCEATGANV--SQVAFAVGT--DSR-IGPKF----LNA-SVGFGGSCFQKDILNLVYICEC 286 (362)
Q Consensus 223 ------~~~~ia~~nE~~~l~~~~g~d~--~~v~~~~~~--~~~-i~~~~----~~~-g~g~gg~cl~kD~~~l~~~a~~ 286 (362)
+.+..+.++|+..+++++|+++ ..+.+.+.. .+. .+.+. .+. ..|+-.. +.+|..++.+.+++
T Consensus 213 ~~~~~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~sm~~d~~~~g~~~E-~~~~~~~~~~~a~~ 291 (316)
T 2ew2_A 213 GALPVSESLVKTLISEFAAVAEKEAIYLDQAEVYTHIVQTYDPNGIGLHYPSMYQDLIKNHRLTE-IDYINGAVWRKGQK 291 (316)
T ss_dssp HTSTTHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCTTTTTTSCCHHHHHHTTTCCCCS-GGGTHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccccCCCCCcHHHHHHHHcCCcch-HHHHhhHHHHHHHH
Confidence 3667899999999999999986 455555432 110 01111 111 3455445 79999999999999
Q ss_pred CCCchhHHHHHHHHH
Q 017997 287 NGLPEVAEYWKQVIK 301 (362)
Q Consensus 287 ~g~~~~~~~~~~~~~ 301 (362)
+|++ .|+++.+.+
T Consensus 292 ~gv~--~P~~~~~~~ 304 (316)
T 2ew2_A 292 YNVA--TPFCAMLTQ 304 (316)
T ss_dssp HTCC--CHHHHHHHH
T ss_pred hCCC--CCHHHHHHH
Confidence 9999 777665544
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=162.71 Aligned_cols=197 Identities=14% Similarity=0.148 Sum_probs=129.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR--INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~--~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|.||.++|..|+++ ||+|++||+++++ .+...... ......++... .+... ++++.+++++|
T Consensus 20 ~kIgiIG~G~mG~alA~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~-~~~~~e~~~~a 91 (245)
T 3dtt_A 20 MKIAVLGTGTVGRTMAGALADL--GHEVTIGTRDPKATLARAEPDAM---GAPPFSQWLPE--HPHVH-LAAFADVAAGA 91 (245)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHTCC----------CCHHHHGGG--STTCE-EEEHHHHHHHC
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCEEEEEeCChhhhhhhhhhhhh---cchhhhHHHhh--cCcee-ccCHHHHHhcC
Confidence 7999999999999999999999 9999999999987 11100000 00001111111 12233 45667778999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHH-HhhcCCCCEEEEee-----------CCccccHHHHHHHHHhccCC
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVI-ADVSKSDKIVVEKS-----------TVPVKTAEAIEKILTHNSKG 147 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i-~~~l~~~~iVv~~S-----------Tv~~gt~~~l~~~l~~~~~g 147 (362)
|+||+|||++ .+.+++.++ .+.+ ++++||+.| |+.|.+...+.+.+++..++
T Consensus 92 DvVilavp~~---------------~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~ 155 (245)
T 3dtt_A 92 ELVVNATEGA---------------SSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPE 155 (245)
T ss_dssp SEEEECSCGG---------------GHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTT
T ss_pred CEEEEccCcH---------------HHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCC
Confidence 9999999853 234566677 6666 789999988 77777665555555443211
Q ss_pred C----ceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHH
Q 017997 148 I----KFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFL 223 (362)
Q Consensus 148 ~----~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~ 223 (362)
. .+..+.+|....+..+... +..+++++.+ +++.+.++++|+.++....++.++++.+..+|++.|.+.
T Consensus 156 ~~vv~~~~~~~a~v~~~~~~a~~g---~~~~~v~g~d----~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~~ 228 (245)
T 3dtt_A 156 AKVVKTLNTMNASLMVDPGRAAGG---DHSVFVSGND----AAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWI 228 (245)
T ss_dssp SEEEECSTTSCHHHHHCGGGTGGG---CCCEEEECSC----HHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHHH
T ss_pred CeEEEeecccCHHHhcCccccCCC---CeeEEEECCC----HHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHHH
Confidence 1 1223445555444433211 2236677663 789999999999987312366789999999999999998
Q ss_pred HHHHHH
Q 017997 224 AQRISS 229 (362)
Q Consensus 224 ~~~ia~ 229 (362)
.+++++
T Consensus 229 ~l~~~~ 234 (245)
T 3dtt_A 229 RLWGAL 234 (245)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 877553
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-17 Score=152.27 Aligned_cols=196 Identities=15% Similarity=0.173 Sum_probs=143.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc-
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (362)
||||+|||+|.||..+|..|++. |+ +|++||+++++++.+++... ....+++++++++
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~--g~~~~V~~~d~~~~~~~~~~~~g~-----------------~~~~~~~~~~~~~~ 61 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRS--GFKGKIYGYDINPESISKAVDLGI-----------------IDEGTTSIAKVEDF 61 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHHHTTS-----------------CSEEESCGGGGGGT
T ss_pred CcEEEEEecCHHHHHHHHHHHhc--CCCcEEEEEeCCHHHHHHHHHCCC-----------------cccccCCHHHHhcC
Confidence 78999999999999999999998 88 99999999999887764210 0134567777788
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
++|+||+|||.+ .+.++++++.+.++++++|++.+++.+.+.+.+.+.+.+.. ...+-...|+
T Consensus 62 ~aDvVilavp~~---------------~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~--v~~~p~~~~~ 124 (281)
T 2g5c_A 62 SPDFVMLSSPVR---------------TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRF--VGGHPIAGTE 124 (281)
T ss_dssp CCSEEEECSCHH---------------HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGE--ECEEEECCCS
T ss_pred CCCEEEEcCCHH---------------HHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccccc--eeeccccCCc
Confidence 999999999842 34677888888899999998888887766677776665410 0111123445
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEe-CChhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT-TNLWSAELSKLAANAFLAQRISSVNAMSA 235 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (362)
..+|+.+..+++....+++... ...+++..+.++++|+.++ .+++. .+....+++|++.|....+.+++++.+..
T Consensus 125 ~~gp~~a~~~l~~g~~~~~~~~-~~~~~~~~~~v~~l~~~~g--~~~~~~~~~~~d~~~~~~~~~~~~~a~~~~~~~~~ 200 (281)
T 2g5c_A 125 KSGVEYSLDNLYEGKKVILTPT-KKTDKKRLKLVKRVWEDVG--GVVEYMSPELHDYVFGVVSHLPHAVAFALVDTLIH 200 (281)
T ss_dssp CCSGGGCCSSTTTTCEEEECCC-SSSCHHHHHHHHHHHHHTT--CEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred cCChhhhhhHHhCCCCEEEecC-CCCCHHHHHHHHHHHHHcC--CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567777666666654545421 1124788999999999986 34544 45566899999999988878888887765
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-19 Score=163.40 Aligned_cols=192 Identities=21% Similarity=0.261 Sum_probs=135.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+||+|||+|.||.+||.+|+ + |++|++||+++++++++.+. + .++ ..+++++++|+++ +++||+
T Consensus 13 ~~V~vIG~G~MG~~iA~~la-a--G~~V~v~d~~~~~~~~~~~~---l----~~~-----~~~~i~~~~~~~~-~~~aDl 76 (293)
T 1zej_A 13 MKVFVIGAGLMGRGIAIAIA-S--KHEVVLQDVSEKALEAAREQ---I----PEE-----LLSKIEFTTTLEK-VKDCDI 76 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T--TSEEEEECSCHHHHHHHHHH---S----CGG-----GGGGEEEESSCTT-GGGCSE
T ss_pred CeEEEEeeCHHHHHHHHHHH-c--CCEEEEEECCHHHHHHHHHH---H----HHH-----HhCCeEEeCCHHH-HcCCCE
Confidence 68999999999999999999 8 99999999999999887653 1 011 1235888899876 899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhcc--CCCceEEeeCCcc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNS--KGIKFQILSNPEF 158 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~--~g~~~~v~~~Pe~ 158 (362)
||.|+|.+. +++ ...+.++.+. +++++ +++||+++..... .+.... .|.+| ++|.+
T Consensus 77 Vieavpe~~-----------~vk--~~l~~~l~~~--~~~IlasntSti~~~~~a~---~~~~~~r~~G~Hf---~~Pv~ 135 (293)
T 1zej_A 77 VMEAVFEDL-----------NTK--VEVLREVERL--TNAPLCSNTSVISVDDIAE---RLDSPSRFLGVHW---MNPPH 135 (293)
T ss_dssp EEECCCSCH-----------HHH--HHHHHHHHTT--CCSCEEECCSSSCHHHHHT---TSSCGGGEEEEEE---CSSTT
T ss_pred EEEcCcCCH-----------HHH--HHHHHHHhcC--CCCEEEEECCCcCHHHHHH---HhhcccceEeEEe---cCccc
Confidence 999998642 222 3455666665 88887 5788988864322 111111 13232 24643
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (362)
..+ ...++ .+..+ +++++++++++++.++ +.++++.+. |+++|.+ .++++|...+++
T Consensus 136 ~~~---------lveiv-~g~~t--~~~~~~~~~~l~~~lG-k~~v~v~d~------fi~Nrll----~~~~~EA~~l~~ 192 (293)
T 1zej_A 136 VMP---------LVEIV-ISRFT--DSKTVAFVEGFLRELG-KEVVVCKGQ------SLVNRFN----AAVLSEASRMIE 192 (293)
T ss_dssp TCC---------EEEEE-ECTTC--CHHHHHHHHHHHHHTT-CEEEEEESS------CHHHHHH----HHHHHHHHHHHH
T ss_pred cCC---------EEEEE-CCCCC--CHHHHHHHHHHHHHcC-CeEEEeccc------ccHHHHH----HHHHHHHHHHHH
Confidence 321 11244 44323 4899999999999987 345666653 6666654 378999999999
Q ss_pred HhCCCHHHHHHHhcCC
Q 017997 239 ATGANVSQVAFAVGTD 254 (362)
Q Consensus 239 ~~g~d~~~v~~~~~~~ 254 (362)
+ |+|++++.+++...
T Consensus 193 ~-Gv~~e~id~~~~~g 207 (293)
T 1zej_A 193 E-GVRAEDVDRVWKHH 207 (293)
T ss_dssp H-TCCHHHHHHHHHTT
T ss_pred h-CCCHHHHHHHHHhc
Confidence 9 88999999999753
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=171.42 Aligned_cols=209 Identities=17% Similarity=0.196 Sum_probs=142.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----CCCCCCC-hHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----LPIYEPG-LDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~----~~~~e~~-l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
+||+|||+|.||.+||..|+++ |++|++||+++++++.+.+.. ....+.+ +...-......++++++|++ ++
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 82 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASH--GHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-AL 82 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GG
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hh
Confidence 5899999999999999999999 999999999999998765310 0000001 00000000123688899986 59
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--CCceEEe
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GIKFQIL 153 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g~~~~v~ 153 (362)
++||+||+|||+.. ....++++++.+.+++++++ +++||+++.. +...+..... |.+|
T Consensus 83 ~~aDlVIeAVpe~~-------------~vk~~v~~~l~~~~~~~~IlasntSti~i~~---ia~~~~~p~~~ig~hf--- 143 (483)
T 3mog_A 83 AAADLVIEAASERL-------------EVKKALFAQLAEVCPPQTLLTTNTSSISITA---IAAEIKNPERVAGLHF--- 143 (483)
T ss_dssp GGCSEEEECCCCCH-------------HHHHHHHHHHHHHSCTTCEEEECCSSSCHHH---HTTTSSSGGGEEEEEE---
T ss_pred cCCCEEEEcCCCcH-------------HHHHHHHHHHHHhhccCcEEEecCCCCCHHH---HHHHccCccceEEeee---
Confidence 99999999998532 23367888999999999988 5788888742 2222211110 2221
Q ss_pred eCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHH
Q 017997 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 233 (362)
Q Consensus 154 ~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (362)
++|.... .. ..++++..+ ++++++.+.++++.++ +.++++.+... |+++|.+. +++||.
T Consensus 144 ~~Pa~v~---------~L-vevv~g~~T--s~e~~~~~~~l~~~lG-k~~v~v~d~~G----fi~Nr~l~----~~~~Ea 202 (483)
T 3mog_A 144 FNPAPVM---------KL-VEVVSGLAT--AAEVVEQLCELTLSWG-KQPVRCHSTPG----FIVNRVAR----PYYSEA 202 (483)
T ss_dssp CSSTTTC---------CE-EEEEECSSC--CHHHHHHHHHHHHHTT-CEEEEEESCTT----TTHHHHTH----HHHHHH
T ss_pred cChhhhC---------Ce-EEEecCCCC--CHHHHHHHHHHHHHhC-CEEEEEeccCc----chHHHHHH----HHHHHH
Confidence 3443322 11 234565533 5889999999999987 35666665432 55555543 489999
Q ss_pred HHHHHHhCCCHHHHHHHhcC
Q 017997 234 SALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 234 ~~l~~~~g~d~~~v~~~~~~ 253 (362)
..++++.++|++++.+++..
T Consensus 203 ~~l~~~g~~~~~~id~a~~~ 222 (483)
T 3mog_A 203 WRALEEQVAAPEVIDAALRD 222 (483)
T ss_dssp HHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHh
Confidence 99999999999999999974
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.1e-19 Score=163.40 Aligned_cols=256 Identities=14% Similarity=0.126 Sum_probs=161.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||.++|..|+++ ||+|++||+++++++.++.... .+. .. ...+. +++. ++++++|+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~~~~~~l~~~~~----~~~-~~-----~~~~~-~~~~-~~~~~~d~ 66 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQPYCSVNLVET----DGS-IF-----NESLT-ANDP-DFLATSDL 66 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSEEEEEEECT----TSC-EE-----EEEEE-ESCH-HHHHTCSE
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCCEEEEEcCccceeeEEEEcC----CCc-ee-----eeeee-ecCc-cccCCCCE
Confidence 7999999999999999999999 9999999999876554432110 000 00 00122 2444 45889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCc--eEEeeCCccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIK--FQILSNPEFL 159 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~--~~v~~~Pe~~ 159 (362)
||+|||++ .+.++++++.+.++++++|+..++ ..++.+.+.+.+.+...|.. .....+| .
T Consensus 67 vi~~v~~~---------------~~~~v~~~l~~~l~~~~~vv~~~~-g~~~~~~l~~~~~~~~~g~~~~~~~~~~p-~- 128 (291)
T 1ks9_A 67 LLVTLKAW---------------QVSDAVKSLASTLPVTTPILLIHN-GMGTIEELQNIQQPLLMGTTTHAARRDGN-V- 128 (291)
T ss_dssp EEECSCGG---------------GHHHHHHHHHTTSCTTSCEEEECS-SSCTTGGGTTCCSCEEEEEECCEEEEETT-E-
T ss_pred EEEEecHH---------------hHHHHHHHHHhhCCCCCEEEEecC-CCCcHHHHHHhcCCeEEEEEeEccEEcCC-E-
Confidence 99999853 257888899999998888876544 34554444333322000100 0112344 2
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHH----------------
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFL---------------- 223 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~---------------- 223 (362)
. ...... ++.+|.... +++..+.++++|+..+. ..++..|+..+.|.|++.|+..
T Consensus 129 ----~-~~~~~g-~~~i~~~~~--~~~~~~~~~~ll~~~g~-~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~ 199 (291)
T 1ks9_A 129 ----I-IHVANG-ITHIGPARQ--QDGDYSYLADILQTVLP-DVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRH 199 (291)
T ss_dssp ----E-EEEECC-CEEEEESSG--GGTTCTHHHHHHHTTSS-CEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGG
T ss_pred ----E-EEeccc-ceEEccCCC--CcchHHHHHHHHHhcCC-CCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHh
Confidence 1 111222 244554221 24567889999998863 3445679999999999999987
Q ss_pred --HHHHHHHHHHHHHHHHhCCCH--HHH----HHHhcCCC-CCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHH
Q 017997 224 --AQRISSVNAMSALCEATGANV--SQV----AFAVGTDS-RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAE 294 (362)
Q Consensus 224 --~~~ia~~nE~~~l~~~~g~d~--~~v----~~~~~~~~-~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~ 294 (362)
++..+.++|+..++++.|+++ .++ .+.+...+ ...+.+.+...|... -+-.+..++.+.++++|++ .|
T Consensus 200 ~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~~~ssm~~d~~~g~~~-e~~~~~g~~~~~a~~~gv~--~P 276 (291)
T 1ks9_A 200 HPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAENISSMLQDIRALRHT-EIDYINGFLLRRARAHGIA--VP 276 (291)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTTCCCHHHHHHHTTCCC-SGGGTHHHHHHHHHHHTCC--CH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCCCChHHHHHHcCCcc-HHHHHHHHHHHHHHHhCCC--CC
Confidence 788899999999999999986 444 33333211 111111111122221 2346788999999999999 77
Q ss_pred HHHHHHH
Q 017997 295 YWKQVIK 301 (362)
Q Consensus 295 ~~~~~~~ 301 (362)
+.+.+.+
T Consensus 277 ~~~~~~~ 283 (291)
T 1ks9_A 277 ENTRLFE 283 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665443
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-18 Score=165.17 Aligned_cols=202 Identities=19% Similarity=0.232 Sum_probs=137.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH--------HH-HcCCCCCCCCChHHHHhhhcCCCEEEecC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRIN--------AW-NSDQLPIYEPGLDGVVKQCRGKNLFFSTD 71 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~--------~l-~~~~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (362)
|+||+|||+|.||.+||..|+++ |++|++||+++++.. .+ .+|... +...+. ...++++++|
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~a--G~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~--~~~~~~-----~~~~i~~t~d 124 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLA--GIETFLVVRNEQRCKQELEVMYAREKSFKRLN--DKRIEK-----INANLKITSD 124 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHTTSCC--HHHHHH-----HHTTEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECcHHHHHHHHHHHHHHHHHcCCCC--HHHHHH-----HhcceEEeCC
Confidence 47999999999999999999999 999999999998432 11 222111 000011 1256899999
Q ss_pred HHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--CC
Q 017997 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GI 148 (362)
Q Consensus 72 ~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g~ 148 (362)
++ ++++||+||+|||+.. .....+++++.+.++++++| .++||+++. .+...+..... |.
T Consensus 125 l~-al~~aDlVIeAVpe~~-------------~vk~~v~~~l~~~~~~~aIlasnTSsl~i~---~ia~~~~~p~r~iG~ 187 (460)
T 3k6j_A 125 FH-KLSNCDLIVESVIEDM-------------KLKKELFANLENICKSTCIFGTNTSSLDLN---EISSVLRDPSNLVGI 187 (460)
T ss_dssp GG-GCTTCSEEEECCCSCH-------------HHHHHHHHHHHTTSCTTCEEEECCSSSCHH---HHHTTSSSGGGEEEE
T ss_pred HH-HHccCCEEEEcCCCCH-------------HHHHHHHHHHHhhCCCCCEEEecCCChhHH---HHHHhccCCcceEEE
Confidence 86 5999999999998532 23367889999999999998 567778764 23222211100 22
Q ss_pred ceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHH
Q 017997 149 KFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRIS 228 (362)
Q Consensus 149 ~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia 228 (362)
+| ++|....+ ...|+ .+..+ ++++++++.++++.++ +.++++.|. .+++.|.+. .+
T Consensus 188 Hf---fnPv~~m~---------LvEIv-~g~~T--s~e~~~~~~~l~~~lG-k~~v~v~d~-----pGfi~Nril---~~ 243 (460)
T 3k6j_A 188 HF---FNPANVIR---------LVEII-YGSHT--SSQAIATAFQACESIK-KLPVLVGNC-----KSFVFNRLL---HV 243 (460)
T ss_dssp EC---CSSTTTCC---------EEEEE-CCSSC--CHHHHHHHHHHHHHTT-CEEEEESSC-----CHHHHHHHH---HH
T ss_pred Ee---cchhhhCC---------EEEEE-eCCCC--CHHHHHHHHHHHHHhC-CEEEEEecc-----cHHHHHHHH---HH
Confidence 22 34543221 11354 44333 5899999999999987 356666652 224566643 47
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHhc
Q 017997 229 SVNAMSALCEATGANVSQVAFAVG 252 (362)
Q Consensus 229 ~~nE~~~l~~~~g~d~~~v~~~~~ 252 (362)
+++|...++++.|+|++++.+++.
T Consensus 244 ~~~EA~~l~~~~Ga~~e~ID~a~~ 267 (460)
T 3k6j_A 244 YFDQSQKLMYEYGYLPHQIDKIIT 267 (460)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 899999999999999999999874
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-16 Score=149.85 Aligned_cols=188 Identities=16% Similarity=0.196 Sum_probs=137.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCE-EEecCHHh-hhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNL-FFSTDVEK-HVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l-~~t~d~~~-a~~ 77 (362)
|||+|||+|.||.++|..|.+. |+ +|++||+++++++.+.+. +.+ ..++++++ +++
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~--G~~~~V~~~dr~~~~~~~a~~~------------------G~~~~~~~~~~~~~~~ 93 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRS--GFKGKIYGYDINPESISKAVDL------------------GIIDEGTTSIAKVEDF 93 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHHHT------------------TSCSEEESCTTGGGGG
T ss_pred CEEEEEeeCHHHHHHHHHHHhC--CCCCEEEEEECCHHHHHHHHHC------------------CCcchhcCCHHHHhhc
Confidence 7999999999999999999999 88 999999999998877642 111 45677777 799
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCC-
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP- 156 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P- 156 (362)
+||+||+|||.. .+.++++++.+.++++++|++.+++.+...+.+.+.+.+. ++..+|
T Consensus 94 ~aDvVilavp~~---------------~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~~------~v~~hPm 152 (314)
T 3ggo_A 94 SPDFVMLSSPVR---------------TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKR------FVGGHPI 152 (314)
T ss_dssp CCSEEEECSCGG---------------GHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG------EECEEEC
T ss_pred cCCEEEEeCCHH---------------HHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcCCC------EEecCcc
Confidence 999999999842 2467888999999999999988888766666666665432 233344
Q ss_pred ---cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCCh-hHHHHHHHHHhHHHHHHHHHHHH
Q 017997 157 ---EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNL-WSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 157 ---e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
+..++..+..+++....+++... ...+++..+.++++|+.++ ..+..++. ....+++++...-..+..++++.
T Consensus 153 ~G~e~sG~~~A~~~Lf~g~~~il~~~-~~~~~~~~~~v~~l~~~~G--~~v~~~~~~~hD~~~a~~s~lph~~a~~l~~~ 229 (314)
T 3ggo_A 153 AGTEKSGVEYSLDNLYEGKKVILTPT-KKTDKKRLKLVKRVWEDVG--GVVEYMSPELHDYVFGVVSHLPHAVAFALVDT 229 (314)
T ss_dssp CCCCCCSGGGCCTTTTTTCEEEECCC-TTSCHHHHHHHHHHHHHTT--CEEEECCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cCCcccchhhhhhhhhcCCEEEEEeC-CCCCHHHHHHHHHHHHHcC--CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456566666666655555421 2225889999999999986 35555554 45567787777665555666655
Q ss_pred H
Q 017997 233 M 233 (362)
Q Consensus 233 ~ 233 (362)
+
T Consensus 230 ~ 230 (314)
T 3ggo_A 230 L 230 (314)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.9e-18 Score=156.82 Aligned_cols=207 Identities=18% Similarity=0.179 Sum_probs=135.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh--------------hcCCCE
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ--------------CRGKNL 66 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~--------------~~~~~l 66 (362)
|+||+|||+|.||.++|..|+++ ||+|++||+++++++.+++... ..++.++++ ....++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~i~----~~l~~~~~~g~~~~~~~~~~~~~~~~~~i 88 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTEDILAKSKKGIE----ESLRKVAKKKFAENPKAGDEFVEKTLSTI 88 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHH----HHHHHHHHTTSSSCHHHHHHHHHHHHHTE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHH----HHHHHHHHcCCCCccccchhhHHHHHhce
Confidence 46899999999999999999999 9999999999998886532100 000000000 001258
Q ss_pred EEecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEE-EeeCCccccHHHHHHHHHhcc
Q 017997 67 FFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNS 145 (362)
Q Consensus 67 ~~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv-~~STv~~gt~~~l~~~l~~~~ 145 (362)
++++|+++++++||+||+|||++. .....+++++.++++++++|+ ++|++++. .+.+.+....
T Consensus 89 ~~~~~~~~~~~~aD~Vi~avp~~~-------------~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~---~l~~~~~~~~ 152 (302)
T 1f0y_A 89 ATSTDAASVVHSTDLVVEAIVENL-------------KVKNELFKRLDKFAAEHTIFASNTSSLQIT---SIANATTRQD 152 (302)
T ss_dssp EEESCHHHHTTSCSEEEECCCSCH-------------HHHHHHHHHHTTTSCTTCEEEECCSSSCHH---HHHTTSSCGG
T ss_pred EEecCHHHhhcCCCEEEEcCcCcH-------------HHHHHHHHHHHhhCCCCeEEEECCCCCCHH---HHHHhcCCcc
Confidence 889999878999999999998532 223567888988898888875 45566653 2322221110
Q ss_pred C--CCceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHH
Q 017997 146 K--GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFL 223 (362)
Q Consensus 146 ~--g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~ 223 (362)
. +.+| ++|.+..+ ...+ +++..+ +++..+.+.++|+.++. .++++.+.. + ++++|.
T Consensus 153 ~~~g~h~---~~P~~~~~---------~~~i-~~g~~~--~~e~~~~~~~l~~~~G~-~~v~~~~~~-g---~i~nr~-- 210 (302)
T 1f0y_A 153 RFAGLHF---FNPVPVMK---------LVEV-IKTPMT--SQKTFESLVDFSKALGK-HPVSCKDTP-G---FIVNRL-- 210 (302)
T ss_dssp GEEEEEE---CSSTTTCC---------EEEE-ECCTTC--CHHHHHHHHHHHHHTTC-EEEEECSCT-T---TTHHHH--
T ss_pred cEEEEec---CCCcccCc---------eEEE-eCCCCC--CHHHHHHHHHHHHHcCC-ceEEecCcc-c---ccHHHH--
Confidence 0 1111 23433211 1124 454432 48899999999999862 445554421 1 344433
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 017997 224 AQRISSVNAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 224 ~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
.++++||...++++.+++++++..++..
T Consensus 211 --l~~~~~Ea~~l~~~g~~~~~~id~~~~~ 238 (302)
T 1f0y_A 211 --LVPYLMEAIRLYERGDASKEDIDTAMKL 238 (302)
T ss_dssp --HHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 3578999999999999999999998864
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.7e-18 Score=158.42 Aligned_cols=267 Identities=15% Similarity=0.128 Sum_probs=161.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC--C-C-CeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC--P-S-IEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~--~-G-~~V~~~d~~~~~~~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
|||+|||+|.||+++|..|++++ + | |+|++||+ +++++.+++ .+..+.++..... ..++.++++.+ .+
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~-----~~~~~~~~~~~-~~ 81 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFL-----ARPTCVTDNPA-EV 81 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEE-----ECCSEEESCHH-HH
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeE-----EecceEecCcc-cc
Confidence 79999999999999999999750 0 5 89999999 889999887 4433322111100 11245566665 47
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEee-C
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILS-N 155 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~-~ 155 (362)
.++|+||+|||++. +.++++.+.+.++++++|+..++ .++..+.+.+.+.+.. .-..+.+ .
T Consensus 82 ~~~D~vil~vk~~~---------------~~~v~~~i~~~l~~~~~iv~~~n-G~~~~~~l~~~l~~~~--v~~g~~~~~ 143 (317)
T 2qyt_A 82 GTVDYILFCTKDYD---------------MERGVAEIRPMIGQNTKILPLLN-GADIAERMRTYLPDTV--VWKGCVYIS 143 (317)
T ss_dssp CCEEEEEECCSSSC---------------HHHHHHHHGGGEEEEEEEEECSC-SSSHHHHHTTTSCTTT--BCEEEEEEE
T ss_pred CCCCEEEEecCccc---------------HHHHHHHHHhhcCCCCEEEEccC-CCCcHHHHHHHCCCCc--EEEEEEEEE
Confidence 89999999998542 47788899988888887776433 3444455544443211 0011222 2
Q ss_pred CcccccCccccccCCCCeEEEecC-CCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHH-----------
Q 017997 156 PEFLAEGTAIQDLFNPDRVLIGGR-ETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFL----------- 223 (362)
Q Consensus 156 Pe~~~~g~a~~~~~~~~~viiG~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~----------- 223 (362)
..+..||...+. .....+++|.. +.. +++.. .+.++|+..+. ..++..|+..++|.|++.|...
T Consensus 144 a~~~~pg~~~~~-~~g~~~~ig~~~~~~-~~~~~-~~~~ll~~~g~-~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~ 219 (317)
T 2qyt_A 144 ARKSAPGLITLE-ADRELFYFGSGLPEQ-TDDEV-RLAELLTAAGI-RAYNPTDIDWYIMKKFMMISVTATATAYFDKPI 219 (317)
T ss_dssp EEEEETTEEEEE-EEEEEEEEECCSSSC-CHHHH-HHHHHHHHTTC-CEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCH
T ss_pred EEEcCCCEEEEc-CCCceEEEcCCCCCC-cCHHH-HHHHHHHHCCC-CCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCH
Confidence 233445553221 11122336753 221 24556 88999998752 3345679999999999999853
Q ss_pred --------HHHHHHHHHHHHHHHHhCCCHH--HHHHHhcC----CCCCCC-CCccCCCCCcccChhHhHHHHHHHHHhCC
Q 017997 224 --------AQRISSVNAMSALCEATGANVS--QVAFAVGT----DSRIGP-KFLNASVGFGGSCFQKDILNLVYICECNG 288 (362)
Q Consensus 224 --------~~~ia~~nE~~~l~~~~g~d~~--~v~~~~~~----~~~i~~-~~~~~g~g~gg~cl~kD~~~l~~~a~~~g 288 (362)
.+..+.++|+..+++++|+++. .+.+.+.. .++..+ ...+...|.... +-....++.+.++++|
T Consensus 220 g~~~~~~~~~~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~~~~~~~~sm~~d~~~g~~~E-~~~~~g~~~~~a~~~g 298 (317)
T 2qyt_A 220 GSILTEHEPELLSLLEEVAELFRAKYGQVPDDVVQQLLDKQRKMPPESTSSMHSDFLQGGSTE-VETLTGYVVREAEALR 298 (317)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHC---------------------CTTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCCCCCChHHHHHHcCCccC-HHHHhhHHHHHHHHcC
Confidence 4667999999999999999863 34443321 111111 111111222100 1123678999999999
Q ss_pred CchhHHHHHHHH
Q 017997 289 LPEVAEYWKQVI 300 (362)
Q Consensus 289 ~~~~~~~~~~~~ 300 (362)
++ .|+.+.+.
T Consensus 299 v~--~P~~~~~~ 308 (317)
T 2qyt_A 299 VD--LPMYKRMY 308 (317)
T ss_dssp CC--CHHHHHHH
T ss_pred CC--CCHHHHHH
Confidence 99 67666543
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-18 Score=163.44 Aligned_cols=219 Identities=15% Similarity=0.147 Sum_probs=159.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC--------eEEEEeCCHH-----HHHHHHcC-CCCCCCCChHHHHhhhcCCCEE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI--------EVAVVDISVS-----RINAWNSD-QLPIYEPGLDGVVKQCRGKNLF 67 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~--------~V~~~d~~~~-----~~~~l~~~-~~~~~e~~l~~~~~~~~~~~l~ 67 (362)
.||+|||+|.||+++|..|+++ || +|.+|.++++ ..+.+++. .++.|.|+.. +..+++
T Consensus 35 ~KI~ViGaGsWGTALA~~la~n--g~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~------Lp~~i~ 106 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAEN--CKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGIT------LPDNLV 106 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH--HHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCC------CCSSEE
T ss_pred CeEEEECcCHHHHHHHHHHHHc--CCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCc------CCCCcE
Confidence 4899999999999999999998 65 5999998865 36667764 4566666654 356899
Q ss_pred EecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-CccccH--HHHHHHHHhc
Q 017997 68 FSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTA--EAIEKILTHN 144 (362)
Q Consensus 68 ~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~gt~--~~l~~~l~~~ 144 (362)
+++|+.++++++|+||++||+. +++++++++.++++++.++|..++ +.+++. +.+.+.+.+.
T Consensus 107 ~t~dl~~al~~ad~ii~avPs~---------------~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~ 171 (391)
T 4fgw_A 107 ANPDLIDSVKDVDIIVFNIPHQ---------------FLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEE 171 (391)
T ss_dssp EESCHHHHHTTCSEEEECSCGG---------------GHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHH
T ss_pred EeCCHHHHHhcCCEEEEECChh---------------hhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHH
Confidence 9999999999999999999863 478999999999999998887776 555442 3455555544
Q ss_pred cCCCceEEeeCCcccccCccccccCCCCeEEEecCCCcc-----hHHHHHHHHHHHhccCCCCcE-EeCChhHHHHHH--
Q 017997 145 SKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPE-----GQKAVKALKDVYAHWVPEDRI-LTTNLWSAELSK-- 216 (362)
Q Consensus 145 ~~g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~-----~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ae~~K-- 216 (362)
. +..+.++++|.+..+-.. ..|..+++++.+... .+...+.++.+|.+-. .++ ...|+...|+..
T Consensus 172 ~-~~~~~vLsGPs~A~EVa~----~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~--frvy~s~DviGvElgGAl 244 (391)
T 4fgw_A 172 L-GIQCGALSGANIATEVAQ----EHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPY--FHVSVIEDVAGISICGAL 244 (391)
T ss_dssp H-CCEEEEEECSCCHHHHHT----TCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTT--EEEEEESCHHHHHHHHHH
T ss_pred h-CccceeccCCchHHHhhc----CCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCC--EEEEEeCCccceehHHHH
Confidence 2 345778999998876443 466667787653210 1122466888887632 244 457988777654
Q ss_pred ---------------HHHhHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHH
Q 017997 217 ---------------LAANAFLAQRISSVNAMSALCEAT---GANVSQVAFA 250 (362)
Q Consensus 217 ---------------l~~N~~~~~~ia~~nE~~~l~~~~---g~d~~~v~~~ 250 (362)
+-.|+..++....++||.+|+..+ |.+..++...
T Consensus 245 KNViAIAaGi~dGlg~G~NakAALitrGl~Em~rlg~al~~~g~~~tt~~gl 296 (391)
T 4fgw_A 245 KNVVALGCGFVEGLGWGNNASAAIQRVGLGEIIRFGQMFFPESREETYYQES 296 (391)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHST
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCceeecCC
Confidence 447777888899999999999998 5554444433
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=157.36 Aligned_cols=265 Identities=19% Similarity=0.194 Sum_probs=167.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+|||+|||+|.||+.+|..|+++ |++|++||++ ++++.+++.+..+..++... ..++.+++++++ +.++|
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~--g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~-~~~~D 72 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALA--GEAINVLARG-ATLQALQTAGLRLTEDGATH------TLPVRATHDAAA-LGEQD 72 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHT--TCCEEEECCH-HHHHHHHHTCEEEEETTEEE------EECCEEESCHHH-HCCCS
T ss_pred CCEEEEECcCHHHHHHHHHHHHC--CCEEEEEECh-HHHHHHHHCCCEEecCCCeE------EEeeeEECCHHH-cCCCC
Confidence 38999999999999999999999 9999999996 67888876543332222110 113566788876 78999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-Cc-----------------cccHHHHHHHHH
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VP-----------------VKTAEAIEKILT 142 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~-----------------~gt~~~l~~~l~ 142 (362)
+||+|||++ .+.++++++.+.++++++|+..++ ++ .+..+.+.+.+.
T Consensus 73 ~Vilavk~~---------------~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 137 (335)
T 3ghy_A 73 VVIVAVKAP---------------ALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIP 137 (335)
T ss_dssp EEEECCCHH---------------HHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSC
T ss_pred EEEEeCCch---------------hHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcC
Confidence 999999852 467888889888988888875443 33 233345555443
Q ss_pred hccCCCceEEeeC-CcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhH
Q 017997 143 HNSKGIKFQILSN-PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA 221 (362)
Q Consensus 143 ~~~~g~~~~v~~~-Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~ 221 (362)
.... -..+.+. -.+..||...+. ...++.+|..+.. ..+..+.+.++|+..+- ......|+....|.|++.|+
T Consensus 138 ~~~v--~~gv~~~~a~~~~pg~v~~~--~~g~~~iG~~~~~-~~~~~~~l~~~l~~~g~-~~~~~~di~~~~w~Kl~~na 211 (335)
T 3ghy_A 138 TRHV--LGCVVHLTCATVSPGHIRHG--NGRRLILGEPAGG-ASPRLASIAALFGRAGL-QAECSEAIQRDIWFKLWGNM 211 (335)
T ss_dssp GGGE--EEEEECCCEEESSTTEEEEC--SCCEEEEECTTCS-CCHHHHHHHHHHHHTTC-EEEECSCHHHHHHHHHHTTT
T ss_pred cccE--EEEEEEEEEEEcCCcEEEEC--CCCeEEEecCCCC-cCHHHHHHHHHHHhCCC-CcEeCchHHHHHHHHHHHHh
Confidence 3210 0112222 234556665432 2246778865322 23567888899987642 23445799999999987554
Q ss_pred ---------------------HHHHHHHHHHHHHHHHHHhCCC----HHHHHHHhcCCCC-CCCCCccCCCCCcccChhH
Q 017997 222 ---------------------FLAQRISSVNAMSALCEATGAN----VSQVAFAVGTDSR-IGPKFLNASVGFGGSCFQK 275 (362)
Q Consensus 222 ---------------------~~~~~ia~~nE~~~l~~~~g~d----~~~v~~~~~~~~~-i~~~~~~~g~g~gg~cl~k 275 (362)
.+++..+.++|+..+++++|++ .+++++.+...+. ..+...+--.|-+-.=+-.
T Consensus 212 ~~N~l~al~~~~~g~~~~~~~~~~l~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~sSM~qD~~~gr~~tEid~ 291 (335)
T 3ghy_A 212 TMNPVSVLTGATCDRILDDPLVSAFCLAVMAEAKAIGARIGCPIEQSGEARSAVTRQLGAFKTSMLQDAEAGRGPLEIDA 291 (335)
T ss_dssp THHHHHHHHCCCHHHHHHSHHHHHHHHHHHHHHHHHHHTTTCCCCSCHHHHHHHHHTTCSCCCTTTC-----CCCCCHHH
T ss_pred hhhHHHHHhCCChHHHhcChHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHhccCCCCcHHHHHHHcCCCCchHHH
Confidence 4677889999999999999975 3445554433221 1112111111110011222
Q ss_pred hHHHHHHHHHhCCCchhHHHHHH
Q 017997 276 DILNLVYICECNGLPEVAEYWKQ 298 (362)
Q Consensus 276 D~~~l~~~a~~~g~~~~~~~~~~ 298 (362)
=..++++.|+++|++ .|..+.
T Consensus 292 i~G~vv~~a~~~gv~--~P~~~~ 312 (335)
T 3ghy_A 292 LVASVREIGLHVGVP--TPQIDT 312 (335)
T ss_dssp HTHHHHHHHHHHTCC--CHHHHH
T ss_pred HhhHHHHHHHHhCCC--CCHHHH
Confidence 245789999999999 665443
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-18 Score=160.80 Aligned_cols=293 Identities=17% Similarity=0.187 Sum_probs=176.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-CCCCCCCChHHHHhhhcCCCE-EEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-QLPIYEPGLDGVVKQCRGKNL-FFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~-~~~~~e~~l~~~~~~~~~~~l-~~t~d~~~a~~~a 79 (362)
|||+|||+|.||..+|..|+++ |++|++||+++++++.+++. ...+.+.+.+. ..++ .++++++++++++
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 76 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAG------TAHPDLLTSDIGLAVKDA 76 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCE------EECCSEEESCHHHHHTTC
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHhcCCeEEecccccc------ccccceecCCHHHHHhcC
Confidence 6999999999999999999998 99999999999999988763 22221111110 0123 4677888878999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCce-E--EeeCC
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF-Q--ILSNP 156 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~-~--v~~~P 156 (362)
|+||+|||++. ..++++++.+.++++++|+...++.+++. .+.+.+.+... ..+ + +..+|
T Consensus 77 D~vi~~v~~~~---------------~~~~~~~l~~~l~~~~~vv~~~~~~~~~~-~~~~~l~~~~~-~~v~~~~~~~~~ 139 (359)
T 1bg6_A 77 DVILIVVPAIH---------------HASIAANIASYISEGQLIILNPGATGGAL-EFRKILRENGA-PEVTIGETSSML 139 (359)
T ss_dssp SEEEECSCGGG---------------HHHHHHHHGGGCCTTCEEEESSCCSSHHH-HHHHHHHHTTC-CCCEEEEESSCS
T ss_pred CEEEEeCCchH---------------HHHHHHHHHHhCCCCCEEEEcCCCchHHH-HHHHHHHhcCC-CCeEEEEecCCc
Confidence 99999998532 36778899999999998876533333443 34455554321 111 1 12355
Q ss_pred cc---cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHH---------------
Q 017997 157 EF---LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLA--------------- 218 (362)
Q Consensus 157 e~---~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~--------------- 218 (362)
.. .+||... .+....++.+|......+++..+.++++|..+. ...|+ |.|++
T Consensus 140 ~~~~~~gpg~v~-~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-----~~~di----~~k~~~nvn~~~n~~~al~~ 209 (359)
T 1bg6_A 140 FTCRSERPGQVT-VNAIKGAMDFACLPAAKAGWALEQIGSVLPQYV-----AVENV----LHTSLTNVNAVMHPLPTLLN 209 (359)
T ss_dssp EEEECSSTTEEE-EEEECSCEEEEEESGGGHHHHHHHHTTTCTTEE-----ECSCH----HHHHHCCHHHHHTHHHHHTT
T ss_pred EEEEeCCCCEEE-EEEeecceEEEeccccccHHHHHHHHHHhhhcE-----EcCCh----HhhhccCCCccccHHHHHhh
Confidence 33 2355432 222223456665322123556677777665431 12333 22222
Q ss_pred -----------------HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCC-----------CCCCcc-CCC-CC
Q 017997 219 -----------------ANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRI-----------GPKFLN-ASV-GF 268 (362)
Q Consensus 219 -----------------~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~~~i-----------~~~~~~-~g~-g~ 268 (362)
.+..+.+..+.++|+..+++++|+++.++.+.+...... .+.+.+ .++ -+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~sm~~d~~~~~e~ 289 (359)
T 1bg6_A 210 AARCESGTPFQYYLEGITPSVGSLAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGIAGPINL 289 (359)
T ss_dssp HHHHHTTCCCBHHHHHCCHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHHHTCGGGTTCBCCSSS
T ss_pred hchhhcCCccchhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhCCCcccHHHHHhcchhhcCCCCCCCC
Confidence 122356677889999999999999886666665431100 011100 011 12
Q ss_pred cccChhHhH----HHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhcCCC--CCCEEEEEeeecCCCCCCCC
Q 017997 269 GGSCFQKDI----LNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTV--SNKKIAVLGFAFKKDTGDTR 342 (362)
Q Consensus 269 gg~cl~kD~----~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~~~~v~vlG~~~k~~~~d~r 342 (362)
-+.-+.||+ .++++.|+++|++ .|+.+.+.+.=. .+ ..+.+ .|+++..||++ +.+++|+|
T Consensus 290 ~~~~~~~D~~~~~g~~~~~a~~~gv~--~P~~~~l~~~~~--------~~---~~~~~~~~g~~~~~lgl~-~~~~~~~~ 355 (359)
T 1bg6_A 290 NTRYFFEDVSTGLVPLSELGRAVNVP--TPLIDAVLDLIS--------SL---IDTDFRKEGRTLEKLGLS-GLTAAGIR 355 (359)
T ss_dssp CCHHHHHHHHTTHHHHHHHHHHTTCC--CHHHHHHHHHHH--------HH---TTCCHHHHSCCTTTTTCT-TCCHHHHH
T ss_pred CccceecCcCccHHHHHHHHHHcCCC--chHHHHHHHHHH--------HH---HCCChhhcCCCHHhcCCC-CCCHHHHH
Confidence 333567887 6899999999999 776665543221 11 11111 37788889999 88887765
Q ss_pred C
Q 017997 343 E 343 (362)
Q Consensus 343 ~ 343 (362)
+
T Consensus 356 ~ 356 (359)
T 1bg6_A 356 S 356 (359)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.3e-17 Score=149.35 Aligned_cols=205 Identities=14% Similarity=0.179 Sum_probs=139.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCC-----------CCCCCChHHHHhhhcCCCEEEec
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQL-----------PIYEPGLDGVVKQCRGKNLFFST 70 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~-----------~~~e~~l~~~~~~~~~~~l~~t~ 70 (362)
+||+|||+|.||.++|..|+++ |++|++||+++++++.+.+... .+.....+... .++++++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~-----~~i~~~~ 77 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFH--GFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKAL-----GGIRYSD 77 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHH-----HHCEEES
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----cCeEEeC
Confidence 5899999999999999999999 9999999999999887664200 01111111111 2467889
Q ss_pred CHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEE-EeeCCccccHHHHHHHHHhccC--C
Q 017997 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--G 147 (362)
Q Consensus 71 d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv-~~STv~~gt~~~l~~~l~~~~~--g 147 (362)
++++++++||+||+|||.. ......+++++.+.++++++++ ++|++++ ..+.+.+..... |
T Consensus 78 ~~~~~~~~aDlVi~av~~~-------------~~~~~~v~~~l~~~~~~~~il~s~tS~~~~---~~la~~~~~~~~~ig 141 (283)
T 4e12_A 78 DLAQAVKDADLVIEAVPES-------------LDLKRDIYTKLGELAPAKTIFATNSSTLLP---SDLVGYTGRGDKFLA 141 (283)
T ss_dssp CHHHHTTTCSEEEECCCSC-------------HHHHHHHHHHHHHHSCTTCEEEECCSSSCH---HHHHHHHSCGGGEEE
T ss_pred CHHHHhccCCEEEEeccCc-------------HHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCCcceEE
Confidence 9988899999999999853 2234677889999999999887 5666654 344444432211 2
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEe-CChhHHHHHHHHHhHHHHHH
Q 017997 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT-TNLWSAELSKLAANAFLAQR 226 (362)
Q Consensus 148 ~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ae~~Kl~~N~~~~~~ 226 (362)
.+| ++|.+..+ .. .++++..+ ++++.+.++++++.++. .++.+ .+.. .++.|.+ .
T Consensus 142 ~h~---~~p~~~~~---------lv-evv~~~~t--~~~~~~~~~~l~~~~g~-~~v~v~~~~~-----g~i~nr~---~ 197 (283)
T 4e12_A 142 LHF---ANHVWVNN---------TA-EVMGTTKT--DPEVYQQVVEFASAIGM-VPIELKKEKA-----GYVLNSL---L 197 (283)
T ss_dssp EEE---CSSTTTSC---------EE-EEEECTTS--CHHHHHHHHHHHHHTTC-EEEECSSCCT-----TTTHHHH---H
T ss_pred Ecc---CCCcccCc---------eE-EEEeCCCC--CHHHHHHHHHHHHHcCC-EEEEEecCCC-----CEEehHH---H
Confidence 221 24433221 11 23454433 58899999999999873 45555 2311 1244543 3
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 017997 227 ISSVNAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 227 ia~~nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
.++++|...++++.+++++++.+++..
T Consensus 198 ~~~~~ea~~l~~~g~~~~~~id~~~~~ 224 (283)
T 4e12_A 198 VPLLDAAAELLVDGIADPETIDKTWRI 224 (283)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 478999999999999999999999864
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=154.59 Aligned_cols=205 Identities=13% Similarity=0.112 Sum_probs=146.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc------------CCCCCCCCChHHHHhhhcCCCEEEe
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS------------DQLPIYEPGLDGVVKQCRGKNLFFS 69 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~------------~~~~~~e~~l~~~~~~~~~~~l~~t 69 (362)
.||+|||+|.||..+|..++.+ |++|++||++++.++...+ +... .....++.+ .+++.+
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~-~~~~~~~~l-----~~i~~~ 78 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASG--GFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLK-GSLSAEEQL-----SLISSC 78 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCC-SSSCHHHHH-----HTEEEE
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCC-CccCHHHHH-----hhcccc
Confidence 4899999999999999999999 9999999999987654321 1111 011122222 468899
Q ss_pred cCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--
Q 017997 70 TDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK-- 146 (362)
Q Consensus 70 ~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~-- 146 (362)
+|+++++++||+|+.|||.. .+++ ++++++|.+++++++|+ .++|++++... ...+....+
T Consensus 79 ~~l~~a~~~ad~ViEav~E~-----------l~iK--~~lf~~l~~~~~~~aIlaSNTSsl~is~i---a~~~~~p~r~i 142 (319)
T 3ado_A 79 TNLAEAVEGVVHIQECVPEN-----------LDLK--RKIFAQLDSIVDDRVVLSSSSSCLLPSKL---FTGLAHVKQCI 142 (319)
T ss_dssp CCHHHHTTTEEEEEECCCSC-----------HHHH--HHHHHHHHTTCCSSSEEEECCSSCCHHHH---HTTCTTGGGEE
T ss_pred cchHhHhccCcEEeeccccH-----------HHHH--HHHHHHHHHHhhhcceeehhhhhccchhh---hhhccCCCcEE
Confidence 99999999999999999852 3344 88999999999999988 66777776532 211111111
Q ss_pred CCceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEe-CChhHHHHHHHHHhHHHHH
Q 017997 147 GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT-TNLWSAELSKLAANAFLAQ 225 (362)
Q Consensus 147 g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ae~~Kl~~N~~~~~ 225 (362)
|.|| ++|.+..| ...|| .+..| ++++++++..+++.++ +.++.+ .|. ..++.|. +
T Consensus 143 g~Hf---fNP~~~m~---------LVEiv-~g~~T--s~~~~~~~~~~~~~~g-k~pv~v~kd~-----pGFi~NR---l 198 (319)
T 3ado_A 143 VAHP---VNPPYYIP---------LVELV-PHPET--SPATVDRTHALMRKIG-QSPVRVLKEI-----DGFVLNR---L 198 (319)
T ss_dssp EEEE---CSSTTTCC---------EEEEE-ECTTC--CHHHHHHHHHHHHHTT-CEEEECSSCC-----TTTTHHH---H
T ss_pred EecC---CCCccccc---------hHHhc-CCCCC--cHHHHHHHHHHHHHhC-CccCCcCCCC-----CCEeHHH---H
Confidence 2222 46655433 12355 44544 6899999999999987 356544 332 3467788 4
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 017997 226 RISSVNAMSALCEATGANVSQVAFAVGTD 254 (362)
Q Consensus 226 ~ia~~nE~~~l~~~~g~d~~~v~~~~~~~ 254 (362)
..++++|...+.+...++++++..++...
T Consensus 199 ~~~~~~EA~~lv~eGvas~edID~~~~~g 227 (319)
T 3ado_A 199 QYAIISEAWRLVEEGIVSPSDLDLVMSDG 227 (319)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 67999999999999999999999998754
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=170.37 Aligned_cols=207 Identities=17% Similarity=0.192 Sum_probs=138.9
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCC----CCCCCC-hHHHHhhhcCCCEEEecCHHhh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQL----PIYEPG-LDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~----~~~e~~-l~~~~~~~~~~~l~~t~d~~~a 75 (362)
|+||+|||+|.||.++|.+|+++ ||+|++||+++++++..++... ...+.+ +...-......++++++|++ +
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~a--G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~-~ 388 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYE-S 388 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTT--TCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSG-G
T ss_pred CcEEEEEcCCHhhHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHH-H
Confidence 57899999999999999999999 9999999999998876532100 000000 00000001235688999984 6
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--CCceEE
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GIKFQI 152 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g~~~~v 152 (362)
+++||+||+|||++. ...+.+++++.++++++++| .++||+++.. +...+..... |.+|
T Consensus 389 ~~~aDlVIeaVpe~~-------------~vk~~v~~~l~~~~~~~~IlasntStl~i~~---la~~~~~p~~~iG~hf-- 450 (725)
T 2wtb_A 389 FRDVDMVIEAVIENI-------------SLKQQIFADLEKYCPQHCILASNTSTIDLNK---IGERTKSQDRIVGAHF-- 450 (725)
T ss_dssp GTTCSEEEECCCSCH-------------HHHHHHHHHHHHHSCTTCEEEECCSSSCHHH---HTTTCSCTTTEEEEEE--
T ss_pred HCCCCEEEEcCcCCH-------------HHHHHHHHHHHhhCCCCcEEEeCCCCCCHHH---HHHHhcCCCCEEEecC--
Confidence 999999999998542 22366778899999999988 4577777643 2221211101 2222
Q ss_pred eeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHH
Q 017997 153 LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 153 ~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
++|.+..+ ...|+ .+..+ ++++++.+.++++.++ +.++++.+. .+++.|.+. ++++||
T Consensus 451 -~~P~~~~~---------lvevv-~g~~t--~~e~~~~~~~l~~~lG-k~~v~v~d~-----~Gfi~Nril---~~~~~E 508 (725)
T 2wtb_A 451 -FSPAHIMP---------LLEIV-RTNHT--SAQVIVDLLDVGKKIK-KTPVVVGNC-----TGFAVNRMF---FPYTQA 508 (725)
T ss_dssp -CSSTTTCC---------EEEEE-ECSSC--CHHHHHHHHHHHHHTT-CEEEEEESS-----TTTTHHHHH---HHHHHH
T ss_pred -CCCcccCc---------eEEEE-ECCCC--CHHHHHHHHHHHHHhC-CEEEEECCC-----ccHHHHHHH---HHHHHH
Confidence 35654322 11344 44433 4899999999999987 356666653 345667643 478999
Q ss_pred HHHHHHHhCCCHHHHHHHh
Q 017997 233 MSALCEATGANVSQVAFAV 251 (362)
Q Consensus 233 ~~~l~~~~g~d~~~v~~~~ 251 (362)
...++++ |+|++++.+++
T Consensus 509 a~~l~~~-G~~~e~id~~~ 526 (725)
T 2wtb_A 509 AMFLVEC-GADPYLIDRAI 526 (725)
T ss_dssp HHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHH
Confidence 9999998 99999999998
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-16 Score=146.35 Aligned_cols=175 Identities=16% Similarity=0.160 Sum_probs=123.0
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
||||+|||+|+||.++|..|+++++|++|++||+++++++.+.+... ....+++++++++++|
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~-----------------~~~~~~~~~~~~~~aD 68 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGI-----------------VDEATADFKVFAALAD 68 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTS-----------------CSEEESCTTTTGGGCS
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCC-----------------cccccCCHHHhhcCCC
Confidence 47999999999999999999987446899999999999988764210 0135567777789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-cCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCC---
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-SKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP--- 156 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~-l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P--- 156 (362)
+||+|||.+ .+.++++++.+. ++++++|++.|++.++..+.+.+.+.+. +.. ++..+|
T Consensus 69 vVilavp~~---------------~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~--~~~-~v~~~P~~g 130 (290)
T 3b1f_A 69 VIILAVPIK---------------KTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDK--PVQ-FVGSHPMAG 130 (290)
T ss_dssp EEEECSCHH---------------HHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTS--SCE-EEEEEEC--
T ss_pred EEEEcCCHH---------------HHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhcccc--CCE-EEEeCCcCC
Confidence 999999842 347788889888 8899999888888777667777666541 222 233344
Q ss_pred -cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHH
Q 017997 157 -EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAE 213 (362)
Q Consensus 157 -e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae 213 (362)
+...++.+..+++....+++... ...+++..+.++++|+.++ .+++..+....+
T Consensus 131 ~~~~g~~~a~~~l~~g~~~~~~~~-~~~~~~~~~~v~~l~~~~G--~~~~~~~~~~~d 185 (290)
T 3b1f_A 131 SHKSGAVAANVNLFENAYYIFSPS-CLTKPNTIPALQDLLSGLH--ARYVEIDAAEHD 185 (290)
T ss_dssp ---CCTTSCCTTTTTTSEEEEEEC-TTCCTTHHHHHHHHTGGGC--CEEEECCHHHHH
T ss_pred CCcchHHHhhHHHhCCCeEEEecC-CCCCHHHHHHHHHHHHHcC--CEEEEcCHHHHH
Confidence 33366666556666655544422 1113678899999999986 356556655433
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=169.45 Aligned_cols=203 Identities=18% Similarity=0.229 Sum_probs=137.1
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh---------hcCCCEEEecC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ---------CRGKNLFFSTD 71 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~---------~~~~~l~~t~d 71 (362)
+|||+|||+|.||.+||..|+++ ||+|++||+++++++...+.. +..++.++++ ...+++++++|
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~a--G~~V~l~D~~~~~~~~~~~~i----~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d 387 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASK--GTPILMKDINEHGIEQGLAEA----AKLLVGRVDKGRMTPAKMAEVLNGIRPTLS 387 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHH----HHHHHHHHTTTSSCHHHHHHHHHHEEEESS
T ss_pred CCEEEEECCChhhHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHH----HHHHHHHHhcCCCCHHHHHHHhcCeEEECC
Confidence 47899999999999999999999 999999999999887632100 0001111100 00124788888
Q ss_pred HHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEE-EeeCCccccHHHHHHHHHhccC--CC
Q 017997 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--GI 148 (362)
Q Consensus 72 ~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv-~~STv~~gt~~~l~~~l~~~~~--g~ 148 (362)
+ +++++||+||+|||++. .....+++++.++++++++|+ ++||+++.. +.+.+..... |.
T Consensus 388 ~-~~~~~aDlVIeaV~e~~-------------~vk~~v~~~l~~~~~~~~IlasntStl~i~~---la~~~~~~~~~ig~ 450 (715)
T 1wdk_A 388 Y-GDFGNVDLVVEAVVENP-------------KVKQAVLAEVENHVREDAILASNTSTISISL---LAKALKRPENFVGM 450 (715)
T ss_dssp S-TTGGGCSEEEECCCSCH-------------HHHHHHHHHHHTTSCTTCEEEECCSSSCHHH---HGGGCSCGGGEEEE
T ss_pred H-HHHCCCCEEEEcCCCCH-------------HHHHHHHHHHHhhCCCCeEEEeCCCCCCHHH---HHHHhcCccceEEE
Confidence 8 56999999999998532 223667888999999999885 577777642 2222211100 22
Q ss_pred ceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHH
Q 017997 149 KFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRIS 228 (362)
Q Consensus 149 ~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia 228 (362)
+| ++|.+..+ ...++.| ..+ ++++++.+.++++.++ +.++++.+. .+++.|.+. ++
T Consensus 451 hf---~~P~~~~~---------lvevv~g-~~t--~~e~~~~~~~l~~~lG-k~~v~v~d~-----~Gfi~Nril---~~ 506 (715)
T 1wdk_A 451 HF---FNPVHMMP---------LVEVIRG-EKS--SDLAVATTVAYAKKMG-KNPIVVNDC-----PGFLVNRVL---FP 506 (715)
T ss_dssp EC---CSSTTTCC---------EEEEEEC-SSC--CHHHHHHHHHHHHHTT-CEEEEEESC-----TTTTHHHHH---HH
T ss_pred Ec---cCCcccCc---------eEEEEEC-CCC--CHHHHHHHHHHHHHhC-CEeEEEcCC-----CChhhhHHH---HH
Confidence 22 34543322 1134444 433 4899999999999987 356666653 344666643 47
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Q 017997 229 SVNAMSALCEATGANVSQVAFAV 251 (362)
Q Consensus 229 ~~nE~~~l~~~~g~d~~~v~~~~ 251 (362)
++||...++++ |+|++++.+++
T Consensus 507 ~~~Ea~~l~~~-G~~~~~id~~~ 528 (715)
T 1wdk_A 507 YFGGFAKLVSA-GVDFVRIDKVM 528 (715)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHH
Confidence 89999999997 99999999998
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-16 Score=143.53 Aligned_cols=190 Identities=14% Similarity=0.081 Sum_probs=132.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||..+|..|++. |++|++||+++++++.+++.... ...+++++++ +++|+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~g~~-----------------~~~~~~~~~~-~~~D~ 60 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLV-----------------DEAGQDLSLL-QTAKI 60 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSC-----------------SEEESCGGGG-TTCSE
T ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHhCCCC-----------------ccccCCHHHh-CCCCE
Confidence 7999999999999999999998 89999999999999887652110 1346677776 89999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (362)
||+|||.+ .+.++++++.+.++++++|++.+++.+...+.+.+.+... ...+-..+++..+|
T Consensus 61 vi~av~~~---------------~~~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~---~~~~p~~g~~~~gp 122 (279)
T 2f1k_A 61 IFLCTPIQ---------------LILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGF---IGGHPMAGTAAQGI 122 (279)
T ss_dssp EEECSCHH---------------HHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHSTTC---EEEEECCCCSCSSG
T ss_pred EEEECCHH---------------HHHHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHHHhCCE---eecCcccCCccCCH
Confidence 99999842 4577888999999999999887777665555554433210 01111233344556
Q ss_pred CccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHH
Q 017997 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVN 231 (362)
Q Consensus 162 g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (362)
+.+..+++....+++... ...+++..+.++++|+.++. .++...+....+++|++.|.-..+..++++
T Consensus 123 ~~a~~~~~~g~~~~~~~~-~~~~~~~~~~v~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~p~~i~~al~~ 190 (279)
T 2f1k_A 123 DGAEENLFVNAPYVLTPT-EYTDPEQLACLRSVLEPLGV-KIYLCTPADHDQAVAWISHLPVMVSAALIQ 190 (279)
T ss_dssp GGCCTTTTTTCEEEEEEC-TTCCHHHHHHHHHHHGGGTC-EEEECCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHhHHHhCCCcEEEecC-CCCCHHHHHHHHHHHHHcCC-EEEEcCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666555555433333321 11147889999999999862 344556778999999999975444444444
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-16 Score=141.87 Aligned_cols=197 Identities=12% Similarity=0.063 Sum_probs=134.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~-V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|.||..+|..|++. |++ |.+||+++++++.+.+. -++..+++++++++++|
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~--g~~~v~~~~~~~~~~~~~~~~------------------~g~~~~~~~~~~~~~~D 70 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRK--GFRIVQVYSRTEESARELAQK------------------VEAEYTTDLAEVNPYAK 70 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSHHHHHHHHHH------------------TTCEEESCGGGSCSCCS
T ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHH------------------cCCceeCCHHHHhcCCC
Confidence 7999999999999999999998 898 99999999999887652 12456778888788999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
+||+|+|.+ .+.++++++.+.++++++|+..|+..+.+. +.+.+... ......+|-...
T Consensus 71 vvi~av~~~---------------~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~~~----~~~~~~~~~~g~ 129 (266)
T 3d1l_A 71 LYIVSLKDS---------------AFAELLQGIVEGKREEALMVHTAGSIPMNV--WEGHVPHY----GVFYPMQTFSKQ 129 (266)
T ss_dssp EEEECCCHH---------------HHHHHHHHHHTTCCTTCEEEECCTTSCGGG--STTTCSSE----EEEEECCCC---
T ss_pred EEEEecCHH---------------HHHHHHHHHHhhcCCCcEEEECCCCCchHH--HHHHHHhc----cCcCCceecCCC
Confidence 999998742 347788888888889999988887544322 22222211 112233441111
Q ss_pred cCccccccCCCCeEEE-ecCCCcchHHHHHHHHHHHhccCCCCcEEeCChh---HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017997 161 EGTAIQDLFNPDRVLI-GGRETPEGQKAVKALKDVYAHWVPEDRILTTNLW---SAELSKLAANAFLAQRISSVNAMSAL 236 (362)
Q Consensus 161 ~g~a~~~~~~~~~vii-G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (362)
+. ..+.+.+ +++ |++ ++..+.++++|+.++. .++...+.. ...+.|++.|.. ..+..+.|. +
T Consensus 130 ~~---~~~~~~~-~~v~~~~-----~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ea--l 195 (266)
T 3d1l_A 130 RE---VDFKEIP-FFIEASS-----TEDAAFLKAIASTLSN-RVYDADSEQRKSLHLAAVFTCNFT--NHMYALAAE--L 195 (266)
T ss_dssp CC---CCCTTCC-EEEEESS-----HHHHHHHHHHHHTTCS-CEEECCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--H
T ss_pred ch---hhcCCCe-EEEecCC-----HHHHHHHHHHHHhcCC-cEEEeCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--H
Confidence 11 1233333 445 433 7889999999999862 344444332 568899998873 234444453 7
Q ss_pred HHHhCCCHHHHHHHhcC
Q 017997 237 CEATGANVSQVAFAVGT 253 (362)
Q Consensus 237 ~~~~g~d~~~v~~~~~~ 253 (362)
+++.|+|.+++.+++..
T Consensus 196 ~~~~Gl~~~~~~~l~~~ 212 (266)
T 3d1l_A 196 LKKYNLPFDVMLPLIDE 212 (266)
T ss_dssp HHHTTCCGGGGHHHHHH
T ss_pred HHHcCCCHHHHHHHHHH
Confidence 78999999888777653
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-15 Score=138.19 Aligned_cols=196 Identities=18% Similarity=0.265 Sum_probs=127.3
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCC----eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSI----EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~----~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
+|||+|||+|.||.++|..|+++ |+ +|++||+++++++.+.+. .++..+++..+++
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~--g~~~~~~V~~~~r~~~~~~~~~~~------------------~g~~~~~~~~e~~ 61 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINK--NIVSSNQIICSDLNTANLKNASEK------------------YGLTTTTDNNEVA 61 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT--TSSCGGGEEEECSCHHHHHHHHHH------------------HCCEECSCHHHHH
T ss_pred CCeEEEECccHHHHHHHHHHHhC--CCCCCCeEEEEeCCHHHHHHHHHH------------------hCCEEeCChHHHH
Confidence 37999999999999999999999 88 999999999999888641 0256678888888
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEE-EeeCCccccHHHHHHHHHhccCCCceEEee-
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSKGIKFQILS- 154 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv-~~STv~~gt~~~l~~~l~~~~~g~~~~v~~- 154 (362)
+++|+||+||| |. .+.++++++.++++++++|+ +.++++ .+.+.+.+... .. .+..
T Consensus 62 ~~aDvVilav~-~~--------------~~~~v~~~l~~~l~~~~~vvs~~~gi~---~~~l~~~~~~~---~~-~v~~~ 119 (247)
T 3gt0_A 62 KNADILILSIK-PD--------------LYASIINEIKEIIKNDAIIVTIAAGKS---IESTENAFNKK---VK-VVRVM 119 (247)
T ss_dssp HHCSEEEECSC-TT--------------THHHHC---CCSSCTTCEEEECSCCSC---HHHHHHHHCSC---CE-EEEEE
T ss_pred HhCCEEEEEeC-HH--------------HHHHHHHHHHhhcCCCCEEEEecCCCC---HHHHHHHhCCC---Cc-EEEEe
Confidence 99999999996 32 25778888988888888876 233343 34455545331 11 2223
Q ss_pred --CCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHH-HHHHHHhHHHHHHHHHHH
Q 017997 155 --NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAE-LSKLAANAFLAQRISSVN 231 (362)
Q Consensus 155 --~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae-~~Kl~~N~~~~~~ia~~n 231 (362)
.|....+|. .++..+.. .+++..+.++++|+.++ ..+.+ +..... ++.+.... -+....++.
T Consensus 120 p~~p~~~~~g~---------~~~~~~~~--~~~~~~~~~~~l~~~~G--~~~~~-~e~~~d~~~a~~g~g-pa~~~~~~e 184 (247)
T 3gt0_A 120 PNTPALVGEGM---------SALCPNEM--VTEKDLEDVLNIFNSFG--QTEIV-SEKLMDVVTSVSGSS-PAYVYMIIE 184 (247)
T ss_dssp CCGGGGGTCEE---------EEEEECTT--CCHHHHHHHHHHHGGGE--EEEEC-CGGGHHHHHHHHHHH-HHHHHHHHH
T ss_pred CChHHHHcCce---------EEEEeCCC--CCHHHHHHHHHHHHhCC--CEEEe-CHHHccHHHHHhccH-HHHHHHHHH
Confidence 343333322 23333221 24788999999999986 34444 333222 23332221 223334455
Q ss_pred HHHHHHHHhCCCHHHHHHHhcC
Q 017997 232 AMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 232 E~~~l~~~~g~d~~~v~~~~~~ 253 (362)
.+...+.+.|+|.++..+++..
T Consensus 185 al~~a~~~~Gl~~~~a~~~~~~ 206 (247)
T 3gt0_A 185 AMADAAVLDGMPRNQAYKFAAQ 206 (247)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 5555588999999999988764
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-16 Score=152.97 Aligned_cols=205 Identities=16% Similarity=0.166 Sum_probs=136.0
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh--h-----cCCCEEEecCHH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ--C-----RGKNLFFSTDVE 73 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~--~-----~~~~l~~t~d~~ 73 (362)
||||+|||+|.||.++|..|+++ |++|++||+++++++...+.. +..++.++.+ . .....+.+++++
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~--G~~V~l~D~~~~~~~~~~~~i----~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 110 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV--GISVVAVESDPKQLDAAKKII----TFTLEKEASRAHQNGQASAKPKLRFSSSTK 110 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSHHHHHHHHHHH----HHHHHHHHHHHHHTTCCCCCCCEEEESCGG
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhhhcCCHH
Confidence 47899999999999999999999 999999999999888765411 0011111111 0 012245678884
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC--CCceE
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK--GIKFQ 151 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~--g~~~~ 151 (362)
++++||+||+|||.. +....++++++.++++++++|+. ||..+..+ .+.+.+..... |.+|
T Consensus 111 -~~~~aDlVIeaVpe~-------------~~~k~~v~~~l~~~~~~~~ii~s-nTs~~~~~-~la~~~~~~~~~ig~hf- 173 (463)
T 1zcj_A 111 -ELSTVDLVVEAVFED-------------MNLKKKVFAELSALCKPGAFLCT-NTSALNVD-DIASSTDRPQLVIGTHF- 173 (463)
T ss_dssp -GGTTCSEEEECCCSC-------------HHHHHHHHHHHHHHSCTTCEEEE-CCSSSCHH-HHHTTSSCGGGEEEEEE-
T ss_pred -HHCCCCEEEEcCCCC-------------HHHHHHHHHHHHhhCCCCeEEEe-CCCCcCHH-HHHHHhcCCcceEEeec-
Confidence 589999999999842 23346788889999999988764 66655554 44433321111 3333
Q ss_pred EeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHH
Q 017997 152 ILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVN 231 (362)
Q Consensus 152 v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (362)
++|....+ ...++ .+..+ ++++++.+.++++.++. .++++.+. .+++.|.+. ..+++
T Consensus 174 --~~P~~~~~---------lvevv-~g~~t--~~e~~~~~~~l~~~lGk-~~v~v~~~-----~gfi~Nrll---~~~~~ 230 (463)
T 1zcj_A 174 --FSPAHVMR---------LLEVI-PSRYS--SPTTIATVMSLSKKIGK-IGVVVGNC-----YGFVGNRML---APYYN 230 (463)
T ss_dssp --CSSTTTCC---------EEEEE-ECSSC--CHHHHHHHHHHHHHTTC-EEEEBCCS-----TTTTHHHHH---HHHHH
T ss_pred --CCCcccce---------eEEEe-CCCCC--CHHHHHHHHHHHHHhCC-EEEEECCC-----ccHHHHHHH---HHHHH
Confidence 25654321 11344 44333 58999999999999873 45666542 223555543 35679
Q ss_pred HHHHHHHHhCCCHHHHHHHhc
Q 017997 232 AMSALCEATGANVSQVAFAVG 252 (362)
Q Consensus 232 E~~~l~~~~g~d~~~v~~~~~ 252 (362)
|...++++ |++++++.+++.
T Consensus 231 ea~~l~~~-G~~~~~id~~~~ 250 (463)
T 1zcj_A 231 QGFFLLEE-GSKPEDVDGVLE 250 (463)
T ss_dssp HHHHHHHT-TCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHH
Confidence 99999887 899999998875
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.69 E-value=5e-16 Score=143.47 Aligned_cols=203 Identities=14% Similarity=0.088 Sum_probs=135.0
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|||+ |.||.++|..|++. |++|++||+++++++.+.+.. +..+ +..++++++
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~g-------------------~~~~-~~~~~~~~a 68 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDS--AHHLAAIEIAPEGRDRLQGMG-------------------IPLT-DGDGWIDEA 68 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHS--SSEEEEECCSHHHHHHHHHTT-------------------CCCC-CSSGGGGTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHhcC-------------------CCcC-CHHHHhcCC
Confidence 479999999 99999999999998 999999999999998876521 1122 445668899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|+||+|||.+ .+.++++++.+.++++++|+..|+..+ .+.+. +...+.. ++..+|.+.
T Consensus 69 DvVi~av~~~---------------~~~~v~~~l~~~l~~~~ivv~~s~~~~--~~~l~----~~~~~~~-~v~~~P~~~ 126 (286)
T 3c24_A 69 DVVVLALPDN---------------IIEKVAEDIVPRVRPGTIVLILDAAAP--YAGVM----PERADIT-YFIGHPCHP 126 (286)
T ss_dssp SEEEECSCHH---------------HHHHHHHHHGGGSCTTCEEEESCSHHH--HHTCS----CCCTTSE-EEEEEECCS
T ss_pred CEEEEcCCch---------------HHHHHHHHHHHhCCCCCEEEECCCCch--hHHHH----hhhCCCe-EEecCCCCc
Confidence 9999999842 367888899998999999988666432 12221 1111222 343666543
Q ss_pred cc---Cc---cccccCC----CCeEEEecCCCcchHHHHHHHHHHHhccCCCC---cEEeCChhHHHHH-HHHHhHHHHH
Q 017997 160 AE---GT---AIQDLFN----PDRVLIGGRETPEGQKAVKALKDVYAHWVPED---RILTTNLWSAELS-KLAANAFLAQ 225 (362)
Q Consensus 160 ~~---g~---a~~~~~~----~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~ae~~-Kl~~N~~~~~ 225 (362)
.+ +. ...+... ...++++... +++..+.++++|+.++ . .++..+....... |.+.|.....
T Consensus 127 ~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~---~~~~~~~v~~l~~~~G--~~~~~~~~v~~~~~~~~~~a~~n~~~~~ 201 (286)
T 3c24_A 127 PLFNDETDPAARTDYHGGIAKQAIVCALMQG---PEEHYAIGADICETMW--SPVTRTHRVTTEQLAILEPGLSEMVAMP 201 (286)
T ss_dssp CSSCCCCSHHHHTCSSSSSSCEEEEEEEEES---CTHHHHHHHHHHHHHT--CSEEEEEECCHHHHHHHTTHHHHTTHHH
T ss_pred cccccccchhhccCcccccccceeeeeccCC---CHHHHHHHHHHHHHhc--CCcceEEEeChhHhHHHHHHHHHHHHHH
Confidence 22 11 1111100 0112222111 2678999999999986 3 3444455445555 9999866555
Q ss_pred H-HHHHHHHHHHHHHhCCCHHHHHHHhc
Q 017997 226 R-ISSVNAMSALCEATGANVSQVAFAVG 252 (362)
Q Consensus 226 ~-ia~~nE~~~l~~~~g~d~~~v~~~~~ 252 (362)
. +++++++...+.+.|+|.+++.+++.
T Consensus 202 ~~~~~~eal~~~~~~~Gl~~~~~~~~~~ 229 (286)
T 3c24_A 202 FVETMVHAVDECADRYGIDRQAALDFMI 229 (286)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4 45555577788888999999888775
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-16 Score=146.05 Aligned_cols=253 Identities=18% Similarity=0.146 Sum_probs=159.0
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+|||+|||+|.||+.+|..|+++ |++|++| +++++++.+++.+..+..++... ..++.+++++++ +.++|
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~--G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~------~~~~~~~~~~~~-~~~~D 88 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARA--GHEVILI-ARPQHVQAIEATGLRLETQSFDE------QVKVSASSDPSA-VQGAD 88 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHT--TCEEEEE-CCHHHHHHHHHHCEEEECSSCEE------EECCEEESCGGG-GTTCS
T ss_pred CCcEEEECcCHHHHHHHHHHHHC--CCeEEEE-EcHhHHHHHHhCCeEEEcCCCcE------EEeeeeeCCHHH-cCCCC
Confidence 48999999999999999999999 9999999 99999999986443333332210 123567788765 78999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHH-hccCCC--ceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILT-HNSKGI--KFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~-~~~~g~--~~~v~~~Pe 157 (362)
+||+|||+. .+.++++++.++++++++|+..+ ...+..+.+.+.+. +...+. ...+..+|.
T Consensus 89 ~vilavk~~---------------~~~~~l~~l~~~l~~~~~iv~~~-nGi~~~~~l~~~~~~~vl~g~~~~~a~~~gP~ 152 (318)
T 3hwr_A 89 LVLFCVKST---------------DTQSAALAMKPALAKSALVLSLQ-NGVENADTLRSLLEQEVAAAVVYVATEMAGPG 152 (318)
T ss_dssp EEEECCCGG---------------GHHHHHHHHTTTSCTTCEEEEEC-SSSSHHHHHHHHCCSEEEEEEEEEEEEEEETT
T ss_pred EEEEEcccc---------------cHHHHHHHHHHhcCCCCEEEEeC-CCCCcHHHHHHHcCCcEEEEEEEEeEEEcCCe
Confidence 999999853 25788999999999988876533 33333355655553 111111 011223444
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHH---------------
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF--------------- 222 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~--------------- 222 (362)
++.... . .++.+|.. +..+.+.++|+..+- ..+...|+...+|.|++-|+.
T Consensus 153 ~~~~~~-----~--g~~~ig~~------~~~~~l~~~l~~~~~-~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l 218 (318)
T 3hwr_A 153 HVRHHG-----R--GELVIEPT------SHGANLAAIFAAAGV-PVETSDNVRGALWAKLILNCAYNALSAITQLPYGRL 218 (318)
T ss_dssp EEEEEE-----E--EEEEECCC------TTTHHHHHHHHHTTC-CEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred EEEEcC-----C--ceEEEcCC------HHHHHHHHHHHhCCC-CcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHH
Confidence 333211 1 13556752 234678888887542 244567999999999998872
Q ss_pred ------HHHHHHHHHHHHHHHHHhCCCH-----HHHHHHhcCCCCC-CCCC--ccCCCCCcccChhHhHHHHHHHHHhCC
Q 017997 223 ------LAQRISSVNAMSALCEATGANV-----SQVAFAVGTDSRI-GPKF--LNASVGFGGSCFQKDILNLVYICECNG 288 (362)
Q Consensus 223 ------~~~~ia~~nE~~~l~~~~g~d~-----~~v~~~~~~~~~i-~~~~--~~~g~g~gg~cl~kD~~~l~~~a~~~g 288 (362)
+.+....+.|+..++++.|+++ +.+++.+...+.. .++. +..|-.. =+--=..++++.++++|
T Consensus 219 ~~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~~sSM~qD~~~gr~t---Eid~i~G~vv~~a~~~g 295 (318)
T 3hwr_A 219 VRGEGVEAVMRDVMEECFAVARAEGVKLPDDVALAIRRIAETMPRQSSSTAQDLARGKRS---EIDHLNGLIVRRGDALG 295 (318)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHSTTCCCHHHHHHHTTCCC---SGGGTHHHHHHHHHHTT
T ss_pred hcChhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCCcHHHHHHHcCChh---HHHHHHHHHHHHHHHhC
Confidence 3566789999999999999762 3343433211111 1110 0111000 00111347899999999
Q ss_pred CchhHHHHHH
Q 017997 289 LPEVAEYWKQ 298 (362)
Q Consensus 289 ~~~~~~~~~~ 298 (362)
++ .|..+.
T Consensus 296 v~--tP~~~~ 303 (318)
T 3hwr_A 296 IP--VPANRV 303 (318)
T ss_dssp CC--CHHHHH
T ss_pred CC--CcHHHH
Confidence 98 565443
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-15 Score=139.89 Aligned_cols=258 Identities=14% Similarity=0.061 Sum_probs=158.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||+.+|..|+++ |++|++|++++ .+.+++.+..+..+.-. . ....+.+++++++ +..+|+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~--g~~V~~~~r~~--~~~i~~~g~~~~~~~g~--~---~~~~~~~~~~~~~-~~~~D~ 72 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRS--GEDVHFLLRRD--YEAIAGNGLKVFSINGD--F---TLPHVKGYRAPEE-IGPMDL 72 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHT--SCCEEEECSTT--HHHHHHTCEEEEETTCC--E---EESCCCEESCHHH-HCCCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCeEEEEEcCc--HHHHHhCCCEEEcCCCe--E---EEeeceeecCHHH-cCCCCE
Confidence 7999999999999999999999 99999999986 47777543322111000 0 0012345677765 789999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (362)
||+|||+. .+.++++.+.++++++++|+... ...+..+.+.+.+..... ....+..+-.+..|
T Consensus 73 vilavk~~---------------~~~~~l~~l~~~l~~~~~iv~l~-nGi~~~~~l~~~~~~~~v-~~~~~~~~a~~~~p 135 (312)
T 3hn2_A 73 VLVGLKTF---------------ANSRYEELIRPLVEEGTQILTLQ-NGLGNEEALATLFGAERI-IGGVAFLCSNRGEP 135 (312)
T ss_dssp EEECCCGG---------------GGGGHHHHHGGGCCTTCEEEECC-SSSSHHHHHHHHTCGGGE-EEEEEEEECCBCSS
T ss_pred EEEecCCC---------------CcHHHHHHHHhhcCCCCEEEEec-CCCCcHHHHHHHCCCCcE-EEEEEEeeeEEcCC
Confidence 99999853 23578889999999888776422 223334556665543210 00011122234455
Q ss_pred CccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHH-------------------
Q 017997 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF------------------- 222 (362)
Q Consensus 162 g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~------------------- 222 (362)
|...+. .+..+.+|..+.. +.+..+.+.++|+..+- ......|+...+|.|++-|+.
T Consensus 136 ~~v~~~--~~g~~~ig~~~~~-~~~~~~~l~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~ 211 (312)
T 3hn2_A 136 GEVHHL--GAGRIILGEFLPR-DTGRIEELAAMFRQAGV-DCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARD 211 (312)
T ss_dssp SEEEEC--EEEEEEEEESSCC-CSHHHHHHHHHHHHTTC-CEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSH
T ss_pred cEEEEC--CCCeEEEecCCCC-ccHHHHHHHHHHHhCCC-CcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhCh
Confidence 655432 2335778865322 24567888899987642 234457999999999987772
Q ss_pred --HHHHHHHHHHHHHHHHHhC--CC-----HHHHHHHhcCCCCC-CCCC--ccCCCCCcccChhHh--HHHHHHHHHhCC
Q 017997 223 --LAQRISSVNAMSALCEATG--AN-----VSQVAFAVGTDSRI-GPKF--LNASVGFGGSCFQKD--ILNLVYICECNG 288 (362)
Q Consensus 223 --~~~~ia~~nE~~~l~~~~g--~d-----~~~v~~~~~~~~~i-~~~~--~~~g~g~gg~cl~kD--~~~l~~~a~~~g 288 (362)
+.+....+.|+.+++++.| ++ .+.+++.....++. .++. +..| .-..-| ..++++.|+++|
T Consensus 212 ~~~~l~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~~~~sSM~qD~~~g-----r~tEid~i~G~vv~~a~~~g 286 (312)
T 3hn2_A 212 VSRKLVRGIMLEVIAGANAQGLATFIADGYVDDMLEFTDAMGEYKPSMEIDREEG-----RPLEIAAIFRTPLAYGAREG 286 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSSCCCTTHHHHHHHHHTTSCSCCCHHHHHHHTT-----CCCCHHHHTHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHHHHHHhcCCCCCchHHHHHHhC-----CCccHHHHhhHHHHHHHHhC
Confidence 4566788999999999999 65 34445444322211 0000 0011 001111 337888999999
Q ss_pred CchhHHHHH
Q 017997 289 LPEVAEYWK 297 (362)
Q Consensus 289 ~~~~~~~~~ 297 (362)
++ .|+.+
T Consensus 287 v~--~P~~~ 293 (312)
T 3hn2_A 287 IA--MPRVE 293 (312)
T ss_dssp CC--CHHHH
T ss_pred CC--CCHHH
Confidence 98 56444
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-15 Score=141.53 Aligned_cols=244 Identities=14% Similarity=0.135 Sum_probs=155.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCC----CeEEEEeCCHH--HHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISVS--RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G----~~V~~~d~~~~--~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (362)
+|||+|||+|.||.++|..|+++ | ++|++||++++ +++.+++. .++++++..+
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~--G~~~~~~V~v~~r~~~~~~~~~l~~~-------------------G~~~~~~~~e 80 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAA--GVLAAHKIMASSPDMDLATVSALRKM-------------------GVKLTPHNKE 80 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHT--TSSCGGGEEEECSCTTSHHHHHHHHH-------------------TCEEESCHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCCCcceEEEECCCccHHHHHHHHHc-------------------CCEEeCChHH
Confidence 37999999999999999999998 8 89999999986 77777531 2566778888
Q ss_pred hhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-CccccHHHHHHHHHhccCCCceEEe
Q 017997 75 HVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQIL 153 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~ 153 (362)
+++++|+||+||| |. .+.++++++.+.++++++|+..++ ++. +.+.+.+.+...+.. .+.
T Consensus 81 ~~~~aDvVilav~-~~--------------~~~~vl~~l~~~l~~~~ivvs~s~gi~~---~~l~~~l~~~~~~~~-vv~ 141 (322)
T 2izz_A 81 TVQHSDVLFLAVK-PH--------------IIPFILDEIGADIEDRHIVVSCAAGVTI---SSIEKKLSAFRPAPR-VIR 141 (322)
T ss_dssp HHHHCSEEEECSC-GG--------------GHHHHHHHHGGGCCTTCEEEECCTTCCH---HHHHHHHHTTSSCCE-EEE
T ss_pred HhccCCEEEEEeC-HH--------------HHHHHHHHHHhhcCCCCEEEEeCCCCCH---HHHHHHHhhcCCCCe-EEE
Confidence 8899999999998 32 367888899998988998887654 443 445555654311112 233
Q ss_pred eCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHH--HhHHHHHHHHHHH
Q 017997 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLA--ANAFLAQRISSVN 231 (362)
Q Consensus 154 ~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~--~N~~~~~~ia~~n 231 (362)
..|..... . .....++.++... +++..+.++++|+.++ .+++..+-....+..+. .|.|.+ .+++
T Consensus 142 ~~p~~p~~--~----~~g~~v~~~g~~~--~~~~~~~v~~ll~~~G--~~~~~~e~~~~~~~a~~g~gpa~~~---~~~e 208 (322)
T 2izz_A 142 CMTNTPVV--V----REGATVYATGTHA--QVEDGRLMEQLLSSVG--FCTEVEEDLIDAVTGLSGSGPAYAF---TALD 208 (322)
T ss_dssp EECCGGGG--G----TCEEEEEEECTTC--CHHHHHHHHHHHHTTE--EEEECCGGGHHHHHHHTTTHHHHHH---HHHH
T ss_pred EeCCcHHH--H----cCCeEEEEeCCCC--CHHHHHHHHHHHHhCC--CEEEeCHHHHHHHHHHhcCHHHHHH---HHHH
Confidence 33421111 1 1111355555432 3678899999999986 34544422223344443 244433 4555
Q ss_pred HHHHHHHHhCCCHHHHHHHhcCCCCCCC-CCc-----cC--------CCCCcccChhHhHHHHHHHHHhCCCchhHHHHH
Q 017997 232 AMSALCEATGANVSQVAFAVGTDSRIGP-KFL-----NA--------SVGFGGSCFQKDILNLVYICECNGLPEVAEYWK 297 (362)
Q Consensus 232 E~~~l~~~~g~d~~~v~~~~~~~~~i~~-~~~-----~~--------g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~ 297 (362)
.+...+.+.|+|.+...+++.... .+. .++ .| ++| | .+...++.+++.|++ ..+.+
T Consensus 209 ala~a~~~~Gl~~~~a~~l~~~~~-~g~~~~~~~~~~~p~~l~~~v~sp~--g-----~t~~~l~~l~~~g~~--~~~~~ 278 (322)
T 2izz_A 209 ALADGGVKMGLPRRLAVRLGAQAL-LGAAKMLLHSEQHPGQLKDNVSSPG--G-----ATIHALHVLESGGFR--SLLIN 278 (322)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH-HHHHHHHHHCSSCHHHHHHHHCCTT--S-----HHHHHHHHHHHTTHH--HHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHhcCCCHHHHHHhCCCCC--c-----HHHHHHHHHHHCCHH--HHHHH
Confidence 666667889999988887765321 010 010 11 122 1 233566677788887 67778
Q ss_pred HHHHHHHHhH
Q 017997 298 QVIKINDYQK 307 (362)
Q Consensus 298 ~~~~~N~~~~ 307 (362)
++.+.+++..
T Consensus 279 av~~~~~ra~ 288 (322)
T 2izz_A 279 AVEASCIRTR 288 (322)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777777654
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=143.05 Aligned_cols=258 Identities=16% Similarity=0.115 Sum_probs=157.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||+.+|..|+++ |++|++|++++ .+.+++.+..+......+. ....+.++++++++.+++|+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~--g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~----~~~~~~~~~~~~~~~~~~Dl 74 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT--GHCVSVVSRSD--YETVKAKGIRIRSATLGDY----TFRPAAVVRSAAELETKPDC 74 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT--TCEEEEECSTT--HHHHHHHCEEEEETTTCCE----EECCSCEESCGGGCSSCCSE
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCh--HHHHHhCCcEEeecCCCcE----EEeeeeeECCHHHcCCCCCE
Confidence 7999999999999999999999 99999999986 3777653322111000000 00023456787775559999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCC-----
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP----- 156 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P----- 156 (362)
||+|||+.. +.++++.+.++++++++|+... ...+..+.+.+.+... .++++|
T Consensus 75 VilavK~~~---------------~~~~l~~l~~~l~~~t~Iv~~~-nGi~~~~~l~~~~~~~------~vl~g~~~~~a 132 (320)
T 3i83_A 75 TLLCIKVVE---------------GADRVGLLRDAVAPDTGIVLIS-NGIDIEPEVAAAFPDN------EVISGLAFIGV 132 (320)
T ss_dssp EEECCCCCT---------------TCCHHHHHTTSCCTTCEEEEEC-SSSSCSHHHHHHSTTS------CEEEEEEEEEE
T ss_pred EEEecCCCC---------------hHHHHHHHHhhcCCCCEEEEeC-CCCChHHHHHHHCCCC------cEEEEEEEece
Confidence 999998643 2457788999998888776433 2333345565555432 122333
Q ss_pred cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHH--------------
Q 017997 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF-------------- 222 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~-------------- 222 (362)
.+..||...+. .+..+.+|..+.. +.+..+.+.++|+..+- ......|+...+|.|++-|+.
T Consensus 133 ~~~~pg~v~~~--~~~~~~ig~~~~~-~~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~ 208 (320)
T 3i83_A 133 TRTAPGEIWHQ--AYGRLMLGNYPGG-VSERVKTLAAAFEEAGI-DGIATENITTARWQKCVWNAAFNPLSVLSGGLDTL 208 (320)
T ss_dssp EEEETTEEEEE--EEEEEEEEESSSC-CCHHHHHHHHHHHHTTS-CEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHH
T ss_pred EEcCCCEEEEC--CCCEEEEecCCCC-ccHHHHHHHHHHHhCCC-CceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHH
Confidence 23344554332 2346778854321 23567888899987542 244567999999999998752
Q ss_pred ------HHHHHHHHHHHHHHHHHhCCCH-----HHHHHHhcCCCCC-CCCCc--cCCCCCcccChhHhHHHHHHHHHhCC
Q 017997 223 ------LAQRISSVNAMSALCEATGANV-----SQVAFAVGTDSRI-GPKFL--NASVGFGGSCFQKDILNLVYICECNG 288 (362)
Q Consensus 223 ------~~~~ia~~nE~~~l~~~~g~d~-----~~v~~~~~~~~~i-~~~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g 288 (362)
+.+....+.|+..++++.|+++ +.+++.....+.. .++.. ..|-. .=+--=..++++.|+++|
T Consensus 209 ~~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~~sSM~qD~~~gr~---tEid~i~G~vv~~a~~~g 285 (320)
T 3i83_A 209 DILSTQEGFVRAIMQEIRAVAAANGHPLPEDIVEKNVASTYKMPPYKTSMLVDFEAGQP---METEVILGNAVRAGRRTR 285 (320)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHSCCCCCHHHHHHHHTCC---CCHHHHTHHHHHHHHHTT
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCCCCcHHHHHHhCCC---chHHHHccHHHHHHHHhC
Confidence 3456789999999999999763 3344443322111 00000 00100 001111337888999999
Q ss_pred CchhHHHHHH
Q 017997 289 LPEVAEYWKQ 298 (362)
Q Consensus 289 ~~~~~~~~~~ 298 (362)
++ .|+.+.
T Consensus 286 v~--~P~~~~ 293 (320)
T 3i83_A 286 VA--IPHLES 293 (320)
T ss_dssp CC--CHHHHH
T ss_pred CC--CCHHHH
Confidence 98 665443
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-15 Score=139.43 Aligned_cols=179 Identities=16% Similarity=0.119 Sum_probs=124.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+||+||| +|+||.++|..|++. |++|++||++++. +..+++++||
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~--G~~V~~~~~~~~~--------------------------------~~~~~~~~aD 67 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRAS--GYPISILDREDWA--------------------------------VAESILANAD 67 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTT--TCCEEEECTTCGG--------------------------------GHHHHHTTCS
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC--CCeEEEEECCccc--------------------------------CHHHHhcCCC
Confidence 5899999 999999999999998 9999999987531 2345688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
+||+|||.+ .+.++++++.++++++++|++.+++.....+.+.+.+ +.. ++..+|.+..
T Consensus 68 vVilavp~~---------------~~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~-----~~~-~v~~hP~~g~ 126 (298)
T 2pv7_A 68 VVIVSVPIN---------------LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH-----TGA-VLGLHPMFGA 126 (298)
T ss_dssp EEEECSCGG---------------GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC-----SSE-EEEEEECSCT
T ss_pred EEEEeCCHH---------------HHHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhc-----CCC-EEeeCCCCCC
Confidence 999999853 2578888999999999999888877665555543322 112 3445564332
Q ss_pred cCccccccCCCCeEEEe-cCCCcchHHHHHHHHHHHhccCCCCcEEeCC-hhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 017997 161 EGTAIQDLFNPDRVLIG-GRETPEGQKAVKALKDVYAHWVPEDRILTTN-LWSAELSKLAANAFLAQRISSVNAMSALCE 238 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (362)
+. +.+....+++. +. +++..+.++++|+.++ .+++.++ ....++++++.+....+.+++++.+..
T Consensus 127 ~~----~~~~g~~~~l~~~~----~~~~~~~v~~l~~~~G--~~~~~~~~~~~d~~~a~~~~~p~~~a~~l~~~l~~--- 193 (298)
T 2pv7_A 127 DI----ASMAKQVVVRCDGR----FPERYEWLLEQIQIWG--AKIYQTNATEHDHNMTYIQALRHFSTFANGLHLSK--- 193 (298)
T ss_dssp TC----SCCTTCEEEEEEEE----CGGGTHHHHHHHHHTT--CEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTT---
T ss_pred Cc----hhhcCCeEEEecCC----CHHHHHHHHHHHHHcC--CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 21 12222223333 22 2567889999999986 3555555 445889999999877777788777652
Q ss_pred HhCCCHHHHHH
Q 017997 239 ATGANVSQVAF 249 (362)
Q Consensus 239 ~~g~d~~~v~~ 249 (362)
.|.+.++..+
T Consensus 194 -~g~~~~~~~~ 203 (298)
T 2pv7_A 194 -QPINLANLLA 203 (298)
T ss_dssp -SSCCHHHHHH
T ss_pred -cCCCHHHHHh
Confidence 6676655544
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-14 Score=132.66 Aligned_cols=197 Identities=14% Similarity=0.169 Sum_probs=128.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC---eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI---EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~---~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
|||+|||+|.||.++|..|+++ |+ +|++||+++++++.+.+. -++..+++..+++++
T Consensus 4 ~~I~iIG~G~mG~aia~~l~~~--g~~~~~V~v~dr~~~~~~~l~~~------------------~gi~~~~~~~~~~~~ 63 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLIAN--GYDPNRICVTNRSLDKLDFFKEK------------------CGVHTTQDNRQGALN 63 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHHHT--TCCGGGEEEECSSSHHHHHHHHT------------------TCCEEESCHHHHHSS
T ss_pred CEEEEEcccHHHHHHHHHHHHC--CCCCCeEEEEeCCHHHHHHHHHH------------------cCCEEeCChHHHHhc
Confidence 7999999999999999999999 88 999999999999988762 135677788888999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-cCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-SKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~-l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+|+||+|||. . .+.++++++.++ ++++++|+. ....-+.+.+.+.+... .. .+-.+|.
T Consensus 64 aDvVilav~p-~--------------~~~~vl~~l~~~~l~~~~iiiS--~~agi~~~~l~~~l~~~---~~-vvr~mPn 122 (280)
T 3tri_A 64 ADVVVLAVKP-H--------------QIKMVCEELKDILSETKILVIS--LAVGVTTPLIEKWLGKA---SR-IVRAMPN 122 (280)
T ss_dssp CSEEEECSCG-G--------------GHHHHHHHHHHHHHTTTCEEEE--CCTTCCHHHHHHHHTCC---SS-EEEEECC
T ss_pred CCeEEEEeCH-H--------------HHHHHHHHHHhhccCCCeEEEE--ecCCCCHHHHHHHcCCC---Ce-EEEEecC
Confidence 9999999973 1 357888999988 888877763 22222245565555432 11 2333443
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChh-HHHHHHHH--HhHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLW-SAELSKLA--ANAFLAQRISSVNAMS 234 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~ae~~Kl~--~N~~~~~~ia~~nE~~ 234 (362)
.. ... ......+..+.. .+++..+.++++|+.++ ..+.+.+-. ...++-+. .++|.. .++.-+.
T Consensus 123 ~p--~~v----~~g~~~l~~~~~--~~~~~~~~v~~l~~~iG--~~~~v~~E~~~d~~talsgsgpa~~~---~~~eal~ 189 (280)
T 3tri_A 123 TP--SSV----RAGATGLFANET--VDKDQKNLAESIMRAVG--LVIWVSSEDQIEKIAALSGSGPAYIF---LIMEALQ 189 (280)
T ss_dssp GG--GGG----TCEEEEEECCTT--SCHHHHHHHHHHHGGGE--EEEECSSHHHHHHHHHHTTSHHHHHH---HHHHHHH
T ss_pred Ch--HHh----cCccEEEEeCCC--CCHHHHHHHHHHHHHCC--CeEEECCHHHhhHHHHHhccHHHHHH---HHHHHHH
Confidence 21 111 111123333332 25788999999999986 344443322 11222222 234443 3344444
Q ss_pred HHHHHhCCCHHHHHHHhc
Q 017997 235 ALCEATGANVSQVAFAVG 252 (362)
Q Consensus 235 ~l~~~~g~d~~~v~~~~~ 252 (362)
..+.+.|++.++..+++.
T Consensus 190 ~a~v~~Gl~~~~a~~l~~ 207 (280)
T 3tri_A 190 EAAEQLGLTKETAELLTE 207 (280)
T ss_dssp HHHHHTTCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 557789999988887765
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.8e-15 Score=138.69 Aligned_cols=186 Identities=12% Similarity=0.088 Sum_probs=124.3
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc---
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--- 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--- 77 (362)
+|||+|||+|.||.++|..|.+. |++|++||+++++++.+.+. ++..+++++++++
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~~~~a~~~-------------------G~~~~~~~~e~~~~a~ 66 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAA--NHSVFGYNRSRSGAKSAVDE-------------------GFDVSADLEATLQRAA 66 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHT-------------------TCCEESCHHHHHHHHH
T ss_pred CCEEEEEeecHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-------------------CCeeeCCHHHHHHhcc
Confidence 37999999999999999999999 99999999999998876642 1234567766555
Q ss_pred -CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCC
Q 017997 78 -EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP 156 (362)
Q Consensus 78 -~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (362)
++|+||+|||. ..+.++++++.+. +++++|++.+++.+...+.+.+.+. +.. ++..+|
T Consensus 67 ~~aDlVilavP~---------------~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~----~~~-~v~~HP 125 (341)
T 3ktd_A 67 AEDALIVLAVPM---------------TAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM----QHR-YVGSHP 125 (341)
T ss_dssp HTTCEEEECSCH---------------HHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC----GGG-EECEEE
T ss_pred cCCCEEEEeCCH---------------HHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC----CCc-EecCCc
Confidence 47999999983 2457788888886 7889999888887665555544332 112 344455
Q ss_pred ----cccccCccccccCCCCeEEEecCCCcchHH--------HHHHHHHHHhccCCCCcEEeCChh-HHHHHHHHHhHHH
Q 017997 157 ----EFLAEGTAIQDLFNPDRVLIGGRETPEGQK--------AVKALKDVYAHWVPEDRILTTNLW-SAELSKLAANAFL 223 (362)
Q Consensus 157 ----e~~~~g~a~~~~~~~~~viiG~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~-~ae~~Kl~~N~~~ 223 (362)
|+.++..+..+++....+++... ...+++ .++.++++|+.++ ..+..+++. .-.++.++...-.
T Consensus 126 maG~e~sG~~aa~~~Lf~g~~~iltp~-~~~~~e~~~~~~~~~~~~v~~l~~~~G--a~v~~~~~~~HD~~~A~vshlPh 202 (341)
T 3ktd_A 126 MAGTANSGWSASMDGLFKRAVWVVTFD-QLFDGTDINSTWISIWKDVVQMALAVG--AEVVPSRVGPHDAAAARVSHLTH 202 (341)
T ss_dssp CCSCC-CCGGGCCSSTTTTCEEEECCG-GGTSSCCCCHHHHHHHHHHHHHHHHTT--CEEEECCHHHHHHHHHHHTHHHH
T ss_pred cccccccchhhhhhHHhcCCeEEEEeC-CCCChhhhccchHHHHHHHHHHHHHcC--CEEEEeCHHHHHHHHHHHhHHHH
Confidence 33444445556665544444321 111245 7899999999986 355555553 4556666666654
Q ss_pred HHHHHHHH
Q 017997 224 AQRISSVN 231 (362)
Q Consensus 224 ~~~ia~~n 231 (362)
.+..++++
T Consensus 203 ~ia~aL~~ 210 (341)
T 3ktd_A 203 ILAETLAI 210 (341)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-14 Score=132.01 Aligned_cols=193 Identities=11% Similarity=0.166 Sum_probs=127.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
||||+|||+|.||..++..|++. |++|.+||+++++.+.+.+.. .+..+++++++++++|
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~--g~~v~~~~~~~~~~~~~~~~~------------------g~~~~~~~~~~~~~~D 62 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQT--PHELIISGSSLERSKEIAEQL------------------ALPYAMSHQDLIDQVD 62 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTS--SCEEEEECSSHHHHHHHHHHH------------------TCCBCSSHHHHHHTCS
T ss_pred ccEEEEECCCHHHHHHHHHHHhC--CCeEEEECCCHHHHHHHHHHc------------------CCEeeCCHHHHHhcCC
Confidence 68999999999999999999988 899999999999998876410 1334567888788999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEee-CCccccHHHHHHHHHhccCCCceEEeeCC---
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS-TVPVKTAEAIEKILTHNSKGIKFQILSNP--- 156 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~P--- 156 (362)
+||+|+| |. .+.++++. +.++++|+..+ ++++. .+.+.++. +..+ +-..|
T Consensus 63 ~Vi~~v~-~~--------------~~~~v~~~----l~~~~~vv~~~~~~~~~---~l~~~~~~---~~~~-v~~~p~~~ 116 (259)
T 2ahr_A 63 LVILGIK-PQ--------------LFETVLKP----LHFKQPIISMAAGISLQ---RLATFVGQ---DLPL-LRIMPNMN 116 (259)
T ss_dssp EEEECSC-GG--------------GHHHHHTT----SCCCSCEEECCTTCCHH---HHHHHHCT---TSCE-EEEECCGG
T ss_pred EEEEEeC-cH--------------hHHHHHHH----hccCCEEEEeCCCCCHH---HHHHhcCC---CCCE-EEEcCCch
Confidence 9999998 32 12444433 44777777653 46543 34444432 1122 21222
Q ss_pred cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017997 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (362)
.....| ...++.|+.. +++..+.++++|+.++ ..++........+.++..+.. +....+++.++..
T Consensus 117 ~~~~~g--------~~~i~~~~~~---~~~~~~~~~~ll~~~G--~~~~~~~~~~d~~~al~g~~~-~~~~~~~~~la~~ 182 (259)
T 2ahr_A 117 AQILQS--------STALTGNALV---SQELQARVRDLTDSFG--STFDISEKDFDTFTALAGSSP-AYIYLFIEALAKA 182 (259)
T ss_dssp GGGTCE--------EEEEEECTTC---CHHHHHHHHHHHHTTE--EEEECCGGGHHHHHHHHTTHH-HHHHHHHHHHHHH
T ss_pred HHHcCc--------eEEEEcCCCC---CHHHHHHHHHHHHhCC--CEEEecHHHccHHHHHhccHH-HHHHHHHHHHHHH
Confidence 222221 1123333321 3788999999999986 344555556677777754331 1234566777777
Q ss_pred HHHhCCCHHHHHHHhcC
Q 017997 237 CEATGANVSQVAFAVGT 253 (362)
Q Consensus 237 ~~~~g~d~~~v~~~~~~ 253 (362)
+++.|+|.+++.+++..
T Consensus 183 ~~~~Gl~~~~~~~~~~~ 199 (259)
T 2ahr_A 183 GVKNGIPKAKALEIVTQ 199 (259)
T ss_dssp HHHTTCCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHH
Confidence 99999999999888763
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.1e-15 Score=129.08 Aligned_cols=185 Identities=15% Similarity=0.109 Sum_probs=125.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+||| +|.||..++..|++. |++|+++|+++++.+.+.+.. ...+ ....+.. +++.++++++|
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~--g~~V~~~~r~~~~~~~~~~~~--------~~~~---~~~~~~~-~~~~~~~~~~D 66 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATL--GHEIVVGSRREEKAEAKAAEY--------RRIA---GDASITG-MKNEDAAEACD 66 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT--TCEEEEEESSHHHHHHHHHHH--------HHHH---SSCCEEE-EEHHHHHHHCS
T ss_pred CeEEEEcCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh--------cccc---ccCCCCh-hhHHHHHhcCC
Confidence 7999999 999999999999998 999999999999888775420 0001 0123553 56777789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-Ccc---------cc--HHHHHHHHHhccCCC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPV---------KT--AEAIEKILTHNSKGI 148 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~---------gt--~~~l~~~l~~~~~g~ 148 (362)
+||+|+|.+ .+.++++++.+.++ +++|+..++ +++ +. .+.+.+.+.. .
T Consensus 67 ~Vi~~~~~~---------------~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~ 126 (212)
T 1jay_A 67 IAVLTIPWE---------------HAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----E 126 (212)
T ss_dssp EEEECSCHH---------------HHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----S
T ss_pred EEEEeCChh---------------hHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----C
Confidence 999998732 34667777777774 788887776 442 22 4666665542 2
Q ss_pred ceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhcc-CCCCcEEeCChhHHHHHHHHHhHHHHHH
Q 017997 149 KFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHW-VPEDRILTTNLWSAELSKLAANAFLAQR 226 (362)
Q Consensus 149 ~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ 226 (362)
.+.-+++|.......... ......++++++ +++..+.++++|+.+ +. .+++..+.+.+.+.|.+.|.+..+.
T Consensus 127 ~~v~~~~~~~~~~~~~~~-~~~~~~~~~~g~----~~~~~~~v~~l~~~~~G~-~~~~~~~~~~a~~~k~~~~~~~~~~ 199 (212)
T 1jay_A 127 KVVSALHTIPAARFANLD-EKFDWDVPVCGD----DDESKKVVMSLISEIDGL-RPLDAGPLSNSRLVESLTPLILNIM 199 (212)
T ss_dssp CEEECCTTCCHHHHHCTT-CCCCEEEEEEES----CHHHHHHHHHHHHHSTTE-EEEEEESGGGHHHHHTHHHHHHHHH
T ss_pred eEEEEccchHHHHhhCcC-CCCCccEEEECC----cHHHHHHHHHHHHHcCCC-CceeccchhHHHHhcchHHHHHHHH
Confidence 333334465443332211 111113456665 278899999999998 73 4556678999999999999986543
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=131.83 Aligned_cols=190 Identities=9% Similarity=0.156 Sum_probs=119.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|.||..+|..|++. | ++|++||+++++++.+.+. -++..++++.+++ ++|
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~--g~~~v~~~~r~~~~~~~~~~~------------------~g~~~~~~~~~~~-~~D 59 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQ--GGYRIYIANRGAEKRERLEKE------------------LGVETSATLPELH-SDD 59 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--CSCEEEEECSSHHHHHHHHHH------------------TCCEEESSCCCCC-TTS
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCCeEEEECCCHHHHHHHHHh------------------cCCEEeCCHHHHh-cCC
Confidence 7999999999999999999999 8 9999999999999888652 0245566776767 999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe-eCCccccHHHHHHHHHhccCCCceEEe--eCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK-STVPVKTAEAIEKILTHNSKGIKFQIL--SNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~-STv~~gt~~~l~~~l~~~~~g~~~~v~--~~Pe 157 (362)
+||+||| |. .+.++++.+.+ + +++|+.. |++++ +.+.+.+.. +..+.-+ ..|.
T Consensus 60 ~vi~~v~-~~--------------~~~~v~~~l~~--~-~~ivv~~~~g~~~---~~l~~~~~~---~~~~v~~~~~~~~ 115 (263)
T 1yqg_A 60 VLILAVK-PQ--------------DMEAACKNIRT--N-GALVLSVAAGLSV---GTLSRYLGG---TRRIVRVMPNTPG 115 (263)
T ss_dssp EEEECSC-HH--------------HHHHHHTTCCC--T-TCEEEECCTTCCH---HHHHHHTTS---CCCEEEEECCGGG
T ss_pred EEEEEeC-ch--------------hHHHHHHHhcc--C-CCEEEEecCCCCH---HHHHHHcCC---CCcEEEEcCCHHH
Confidence 9999998 32 34566655544 4 7788776 56765 445444433 1122111 1232
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeC-ChhHHHHHHHH--HhHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT-NLWSAELSKLA--ANAFLAQRISSVNAMS 234 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~ae~~Kl~--~N~~~~~~ia~~nE~~ 234 (362)
....|.. .++.|+. .+++..+.++++|+.++ .+++.. +-....++-+. .+.+.. .++..+.
T Consensus 116 ~~~~g~~--------~i~~~~~---~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~al~g~~~~~~~---~~~~~l~ 179 (263)
T 1yqg_A 116 KIGLGVS--------GMYAEAE---VSETDRRIADRIMKSVG--LTVWLDDEEKMHGITGISGSGPAYVF---YLLDALQ 179 (263)
T ss_dssp GGTCEEE--------EEECCTT---SCHHHHHHHHHHHHTTE--EEEECSSTTHHHHHHHHTTSHHHHHH---HHHHHHH
T ss_pred HHcCceE--------EEEcCCC---CCHHHHHHHHHHHHhCC--CEEEeCChhhccHHHHHHccHHHHHH---HHHHHHH
Confidence 2222211 2333332 13778899999999876 344444 21122222221 233332 3444445
Q ss_pred HHHHHhCCCHHHHHHHhc
Q 017997 235 ALCEATGANVSQVAFAVG 252 (362)
Q Consensus 235 ~l~~~~g~d~~~v~~~~~ 252 (362)
..+++.|++.+++.+.+.
T Consensus 180 e~~~~~G~~~~~~~~~~~ 197 (263)
T 1yqg_A 180 NAAIRQGFDMAEARALSL 197 (263)
T ss_dssp HHHHHTTCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 558889999988887763
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-14 Score=130.32 Aligned_cols=187 Identities=13% Similarity=0.127 Sum_probs=123.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC----CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G----~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
|||+|||+|.||.++|..|+++ | ++|++||+++++ . .+..++++.++++
T Consensus 5 m~i~iiG~G~mG~~~a~~l~~~--g~~~~~~v~~~~~~~~~-----~--------------------g~~~~~~~~~~~~ 57 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIANA--NIIKKENLFYYGPSKKN-----T--------------------TLNYMSSNEELAR 57 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHHHH--TSSCGGGEEEECSSCCS-----S--------------------SSEECSCHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCCCCCeEEEEeCCccc-----C--------------------ceEEeCCHHHHHh
Confidence 7999999999999999999998 8 799999998765 1 1455677877789
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCce--EEeeC
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF--QILSN 155 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~--~v~~~ 155 (362)
++|+||+|||.. .+.++++++.+.++++.+|.+.+++++. .+.+.+.+. ..+ ++..+
T Consensus 58 ~~D~vi~~v~~~---------------~~~~v~~~l~~~l~~~~vv~~~~gi~~~---~l~~~~~~~---~~~v~~~p~~ 116 (262)
T 2rcy_A 58 HCDIIVCAVKPD---------------IAGSVLNNIKPYLSSKLLISICGGLNIG---KLEEMVGSE---NKIVWVMPNT 116 (262)
T ss_dssp HCSEEEECSCTT---------------THHHHHHHSGGGCTTCEEEECCSSCCHH---HHHHHHCTT---SEEEEEECCG
T ss_pred cCCEEEEEeCHH---------------HHHHHHHHHHHhcCCCEEEEECCCCCHH---HHHHHhCCC---CcEEEECCCh
Confidence 999999999832 2577888888888544455666667664 344444331 111 11123
Q ss_pred CcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHH--hHHHHHHHHHHHHH
Q 017997 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAA--NAFLAQRISSVNAM 233 (362)
Q Consensus 156 Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~--N~~~~~~ia~~nE~ 233 (362)
|.....| ..++.++... +++..+.++++|+.++ .+++..+-....++++.. |.+. ..++..+
T Consensus 117 p~~~~~g---------~~~~~~~~~~--~~~~~~~~~~ll~~~G--~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~al 180 (262)
T 2rcy_A 117 PCLVGEG---------SFIYCSNKNV--NSTDKKYVNDIFNSCG--IIHEIKEKDMDIATAISGCGPAYV---YLFIESL 180 (262)
T ss_dssp GGGGTCE---------EEEEEECTTC--CHHHHHHHHHHHHTSE--EEEECCGGGHHHHHHHTTSHHHHH---HHHHHHH
T ss_pred HHHHcCC---------eEEEEeCCCC--CHHHHHHHHHHHHhCC--CEEEeCHHHccHHHHHHccHHHHH---HHHHHHH
Confidence 3333221 1234444321 3788999999999986 344444333444555533 4443 4555556
Q ss_pred HHHHHHhCCCHHHHHHHhc
Q 017997 234 SALCEATGANVSQVAFAVG 252 (362)
Q Consensus 234 ~~l~~~~g~d~~~v~~~~~ 252 (362)
...+++.|++.++..+.+.
T Consensus 181 ~~~~~~~Gl~~~~~~~~~~ 199 (262)
T 2rcy_A 181 IDAGVKNGLSRELSKNLVL 199 (262)
T ss_dssp HHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 6667889999988777765
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.1e-14 Score=134.85 Aligned_cols=219 Identities=16% Similarity=0.126 Sum_probs=129.7
Q ss_pred CceEEEEcCChhHHHHHHHHHH-cCCCCeEEEEe---CCHHHHHH-HHcCCCC--CCCCChHHHHhhhcCCCEE-EecCH
Q 017997 1 MVKICCIGAGYVGGPTMAVIAL-KCPSIEVAVVD---ISVSRINA-WNSDQLP--IYEPGLDGVVKQCRGKNLF-FSTDV 72 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~-~~~G~~V~~~d---~~~~~~~~-l~~~~~~--~~e~~l~~~~~~~~~~~l~-~t~d~ 72 (362)
||||+|||+|+||+.+|..|++ + ||+|++|| +++++++. ++++... ..+++.+.. . ...++. +++|+
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~--G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 76 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRD--GVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQT-E--VKSRPKVITKDP 76 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTST--TEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEE-E--EEECCSEEESCH
T ss_pred CceEEEECCCHHHHHHHHHHHhCC--CCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccc-e--eeccceEEeCCH
Confidence 4899999999999999999987 6 89999999 98899988 4544311 111111000 0 011233 77888
Q ss_pred HhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCce-E
Q 017997 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF-Q 151 (362)
Q Consensus 73 ~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~-~ 151 (362)
+++++++|+||+|||++ .+.++++++.++++++++|+.. +...|......+.+.+.....-+ .
T Consensus 77 ~~a~~~aD~Vilav~~~---------------~~~~v~~~l~~~l~~~~ivv~~-~~~~G~~~~~~~~l~~~~~~~v~~~ 140 (404)
T 3c7a_A 77 EIAISGADVVILTVPAF---------------AHEGYFQAMAPYVQDSALIVGL-PSQAGFEFQCRDILGDKAAAVSMMS 140 (404)
T ss_dssp HHHHTTCSEEEECSCGG---------------GHHHHHHHHTTTCCTTCEEEET-TCCTTHHHHHHHHHGGGGGTSEEEE
T ss_pred HHHhCCCCEEEEeCchH---------------HHHHHHHHHHhhCCCCcEEEEc-CCCccHHHHHHHHHHhcCCCeEEEE
Confidence 88889999999999864 2477889999999988877652 12224332223344432111101 1
Q ss_pred EeeCCc---ccccCccccccCCCCeEEEecCCC--cchHHHHHHHHHHHhccCCCCcE-EeCChhHHHHHH---------
Q 017997 152 ILSNPE---FLAEGTAIQDLFNPDRVLIGGRET--PEGQKAVKALKDVYAHWVPEDRI-LTTNLWSAELSK--------- 216 (362)
Q Consensus 152 v~~~Pe---~~~~g~a~~~~~~~~~viiG~~~~--~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ae~~K--------- 216 (362)
+...|. ...||.++.......++.+|.... ...++..+.++.+|.. ..+ ...|+...++.-
T Consensus 141 ~~~~~~~~~~~gpg~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~di~~~~l~~N~~~~~~~~ 216 (404)
T 3c7a_A 141 FETLPWACRIKEFGRKVEVLGTKSVLAASLIKGTAKTVDPLSTLQMLHGAE----PVFRLAKHFLEMLIMSYSFVHPAIL 216 (404)
T ss_dssp ESSCSEEEEEEETTTEEEEEEECSEEEEEEECCSSCCSCHHHHHHHHHCSS----SEEEECSCHHHHHHTTCTTHHHHHH
T ss_pred ecCchHhhcccCCCcEEEEEEECceEEEEEccCCcchHHHHHHHHHHhCCC----CceeEcCCEeeeeecCCceeccHHH
Confidence 112332 234675554444444666675421 1123445555555431 102 233443222220
Q ss_pred -----------------HHHh---HHHHHHHHHHHHHHHHHHHh-----CCCH
Q 017997 217 -----------------LAAN---AFLAQRISSVNAMSALCEAT-----GANV 244 (362)
Q Consensus 217 -----------------l~~N---~~~~~~ia~~nE~~~l~~~~-----g~d~ 244 (362)
+..| ..+.+..+++.|+.++++++ |+++
T Consensus 217 l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~E~~~va~a~~~~~~G~~~ 269 (404)
T 3c7a_A 217 FGRWGSWDGKPVPEAPLFYQGIDQATADMLTACSNECKDVANAIMAACPGNDL 269 (404)
T ss_dssp HHHHTTCCSCCBSSCCBSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHhhhcCCCCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Confidence 2232 45677788999999999999 9876
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=126.29 Aligned_cols=155 Identities=17% Similarity=0.141 Sum_probs=108.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+|||+|||+|.||.++|..|++. |++|++||++++ +++++|
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~--g~~V~~~~~~~~-------------------------------------~~~~aD 59 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIA--GHEVTYYGSKDQ-------------------------------------ATTLGE 59 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT--TCEEEEECTTCC-------------------------------------CSSCCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHH-------------------------------------HhccCC
Confidence 47999999999999999999999 999999998632 267899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-Cc-cc-------c----HHHHHHHHHhccCC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VP-VK-------T----AEAIEKILTHNSKG 147 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~-~g-------t----~~~l~~~l~~~~~g 147 (362)
+||+|+|+ ..+.++++++.+.++ +++|+..|+ ++ ++ + .+.+++.+. +
T Consensus 60 ~vi~av~~---------------~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~----~ 119 (209)
T 2raf_A 60 IVIMAVPY---------------PALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP----D 119 (209)
T ss_dssp EEEECSCH---------------HHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT----T
T ss_pred EEEEcCCc---------------HHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC----C
Confidence 99999983 135778888888887 888887776 44 22 3 344444332 1
Q ss_pred Cce----EEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHH
Q 017997 148 IKF----QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF 222 (362)
Q Consensus 148 ~~~----~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~ 222 (362)
..+ ...++|.+..+... + ..+..+++++. +++..+.++++|+.++. .++...+++.+.+.|.+.|.+
T Consensus 120 ~~vv~~~~~~~~p~~~~~~~~--g-~~~~~~~~~g~----~~~~~~~v~~ll~~~G~-~~~~~~~i~~a~~~K~i~~l~ 190 (209)
T 2raf_A 120 SQVLKAFNTTFAATLQSGQVN--G-KEPTTVLVAGN----DDSAKQRFTRALADSPL-EVKDAGKLKRARELEAMGFMQ 190 (209)
T ss_dssp SEEEECSTTSCHHHHHHSEET--T-TEECEEEEEES----CHHHHHHHHHHTTTSSC-EEEEEESGGGHHHHHHHHHHH
T ss_pred CcEEEeeecccHhhccccccC--C-CCCceeEEcCC----CHHHHHHHHHHHHHcCC-ceEeCCCHhHHHHhcchHHHH
Confidence 111 11235655443221 1 01224556765 26889999999999862 456677999999999888874
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.5e-15 Score=150.64 Aligned_cols=203 Identities=16% Similarity=0.177 Sum_probs=138.1
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-------hcCCCEEEecCHH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-------CRGKNLFFSTDVE 73 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-------~~~~~l~~t~d~~ 73 (362)
+.||+|||+|.||..+|..++.+ |++|+++|++++.++...+... ..++..... ....+++.+++.+
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~a--G~~V~l~D~~~~~l~~~~~~i~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARV--GISVVAVESDPKQLDAAKKIIT----FTLEKEASRAHQNGQASAKPKLRFSSSTK 389 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHH----HHHHHHHHHHHTTTCCCCCCCEEEESCGG
T ss_pred ccEEEEEcccHHHHHHHHHHHhC--CCchhcccchHhhhhhHHHHHH----HHHHHHHHhccccchhhhhhhhcccCcHH
Confidence 36899999999999999999999 9999999999988775443110 001111110 1235688899987
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--CCce
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GIKF 150 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g~~~ 150 (362)
+ +++||+||.||+.. .+++ +++++++.+++++++|+ .++|++++... ...+..... |.||
T Consensus 390 ~-l~~aDlVIEAV~E~-----------l~iK--~~vf~~le~~~~~~aIlASNTSsl~i~~i---a~~~~~p~r~ig~HF 452 (742)
T 3zwc_A 390 E-LSTVDLVVEAVFED-----------MNLK--KKVFAELSALCKPGAFLCTNTSALNVDDI---ASSTDRPQLVIGTHF 452 (742)
T ss_dssp G-GGSCSEEEECCCSC-----------HHHH--HHHHHHHHHHSCTTCEEEECCSSSCHHHH---HTTSSCGGGEEEEEC
T ss_pred H-HhhCCEEEEecccc-----------HHHH--HHHHHHHhhcCCCCceEEecCCcCChHHH---HhhcCCccccccccc
Confidence 6 99999999999852 3444 88999999999999998 77888877532 211111111 2332
Q ss_pred EEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHH
Q 017997 151 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSV 230 (362)
Q Consensus 151 ~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (362)
++|.+..+ ...||-| ..| ++++++.+..+.+.++ +.++.+.|.. .++.|. +..+++
T Consensus 453 ---fnP~~~m~---------LVEvi~g-~~T--s~e~~~~~~~~~~~lg-K~pV~vkd~p-----GFi~NR---i~~~~~ 508 (742)
T 3zwc_A 453 ---FSPAHVMR---------LLEVIPS-RYS--SPTTIATVMSLSKKIG-KIGVVVGNCY-----GFVGNR---MLAPYY 508 (742)
T ss_dssp ---CSSTTTCC---------EEEEEEC-SSC--CHHHHHHHHHHHHHTT-CEEEECCCST-----TTTHHH---HHHHHH
T ss_pred ---cCCCCCCc---------eEEEecC-CCC--CHHHHHHHHHHHHHhC-CCCcccCCCC-----CccHHH---HhhHHH
Confidence 45654432 2246544 434 6899999999999987 4566665432 466777 356788
Q ss_pred HHHHHHHHHhCCCHHHHHHHh
Q 017997 231 NAMSALCEATGANVSQVAFAV 251 (362)
Q Consensus 231 nE~~~l~~~~g~d~~~v~~~~ 251 (362)
+|...+.+. |+++.++.+++
T Consensus 509 ~ea~~l~~e-G~~~~~id~a~ 528 (742)
T 3zwc_A 509 NQGFFLLEE-GSKPEDVDGVL 528 (742)
T ss_dssp HHHHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHH
Confidence 888777765 67777666665
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-14 Score=131.45 Aligned_cols=191 Identities=13% Similarity=0.145 Sum_probs=123.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh-cCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (362)
|||+|||+|.||+.+|..|+++ |++|++|+|+++.++.... .+. .....+.+..+++ ..+|
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~-------~g~---------~~~~~~~~~~~~~~~~~D 64 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQS--LPHTTLIGRHAKTITYYTV-------PHA---------PAQDIVVKGYEDVTNTFD 64 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH--CTTCEEEESSCEEEEEESS-------TTS---------CCEEEEEEEGGGCCSCEE
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeccCcEEEEec-------CCe---------eccceecCchHhcCCCCC
Confidence 7999999999999999999999 8999999998654331111 010 0122333444444 7899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC--CCceEEeeCCcc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK--GIKFQILSNPEF 158 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~--g~~~~v~~~Pe~ 158 (362)
+||+|||+. .+.++++.+.+.++++++|+.... ..+..+. +..... +. +..+-.+
T Consensus 65 ~vilavk~~---------------~~~~~l~~l~~~l~~~~~iv~~~n-Gi~~~~~----~~~~~v~~g~---~~~~a~~ 121 (294)
T 3g17_A 65 VIIIAVKTH---------------QLDAVIPHLTYLAHEDTLIILAQN-GYGQLEH----IPFKNVCQAV---VYISGQK 121 (294)
T ss_dssp EEEECSCGG---------------GHHHHGGGHHHHEEEEEEEEECCS-SCCCGGG----CCCSCEEECE---EEEEEEE
T ss_pred EEEEeCCcc---------------CHHHHHHHHHHhhCCCCEEEEecc-CcccHhh----CCCCcEEEEE---EEEEEEE
Confidence 999999842 357888899998888877764332 2222221 221110 10 0011123
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhH-----------------
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA----------------- 221 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~----------------- 221 (362)
.+||.... .+.++.++ . .+..+.+.++|+..+- ......|+...+|.|++-|+
T Consensus 122 ~~pg~v~~---~~~~~~~~-~-----~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~ 191 (294)
T 3g17_A 122 KGDVVTHF---RDYQLRIQ-D-----NALTRQFRDLVQDSQI-DIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMH 191 (294)
T ss_dssp ETTEEEEE---EEEEEEEE-C-----SHHHHHHHHHTTTSSC-EEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGG
T ss_pred cCCCEEEE---CCCEEecC-c-----cHHHHHHHHHHHhCCC-ceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHc
Confidence 34454421 13455554 3 2457788889887541 23446799999999999887
Q ss_pred ---HHHHHHHHHHHHHHHHHHhCCC
Q 017997 222 ---FLAQRISSVNAMSALCEATGAN 243 (362)
Q Consensus 222 ---~~~~~ia~~nE~~~l~~~~g~d 243 (362)
.+.+....++|+..++++.|++
T Consensus 192 ~~~~~~l~~~~~~E~~~va~a~G~~ 216 (294)
T 3g17_A 192 NPEIRILCRQLLLDGCRVAQAEGLN 216 (294)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 2455668899999999999976
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.6e-14 Score=123.20 Aligned_cols=166 Identities=15% Similarity=0.180 Sum_probs=104.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~-~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|||+|+||..+|..|+++ |++|++ ||+++++++.+.+.. +....+++ .++++++
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~--g~~V~~v~~r~~~~~~~l~~~~-----------------g~~~~~~~-~~~~~~a 82 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAA--QIPAIIANSRGPASLSSVTDRF-----------------GASVKAVE-LKDALQA 82 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHT--TCCEEEECTTCGGGGHHHHHHH-----------------TTTEEECC-HHHHTTS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCCHHHHHHHHHHh-----------------CCCcccCh-HHHHhcC
Confidence 57999999999999999999999 999999 999999988876420 11112334 4458999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-Cc-----cc------cHHHHHHHHHhccCC
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VP-----VK------TAEAIEKILTHNSKG 147 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~-----~g------t~~~l~~~l~~~~~g 147 (362)
|+||+|||.. .+.++++++.+ + ++++|+..++ ++ +. +.+.+++.+...
T Consensus 83 DvVilavp~~---------------~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~--- 142 (220)
T 4huj_A 83 DVVILAVPYD---------------SIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGA--- 142 (220)
T ss_dssp SEEEEESCGG---------------GHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTC---
T ss_pred CEEEEeCChH---------------HHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCC---
Confidence 9999999731 34667777766 4 4677766554 31 11 445666555421
Q ss_pred CceEEee--CCc-ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHH
Q 017997 148 IKFQILS--NPE-FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAEL 214 (362)
Q Consensus 148 ~~~~v~~--~Pe-~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~ 214 (362)
.+.-++ .|. ....+.... ..+..+++++.+ +++.+.++++|+.++ ..++..+++..+.+
T Consensus 143 -~vv~~~~~~~~~v~~~g~~~~--~~~~~v~~~g~~----~~~~~~v~~l~~~~G-~~~~~~G~l~~a~~ 204 (220)
T 4huj_A 143 -KVVKAFNTLPAAVLAADPDKG--TGSRVLFLSGNH----SDANRQVAELISSLG-FAPVDLGTLAASGP 204 (220)
T ss_dssp -EEEEESCSSCHHHHTSCSBCS--SCEEEEEEEESC----HHHHHHHHHHHHHTT-CEEEECCSHHHHHH
T ss_pred -CEEECCCCCCHHHhhhCcccC--CCCeeEEEeCCC----HHHHHHHHHHHHHhC-CCeEeeCChhhcch
Confidence 111111 111 111111111 122345566653 789999999999987 34556677766544
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=123.22 Aligned_cols=167 Identities=17% Similarity=0.168 Sum_probs=107.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~-~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+|+|||+|.||.++|..|.+. |++|+++|+++++ .+...+. ++..+ ++++++++||
T Consensus 17 ~~I~IIG~G~mG~alA~~L~~~--G~~V~~~~~~~~~~~~~a~~~-------------------G~~~~-~~~e~~~~aD 74 (338)
T 1np3_A 17 KKVAIIGYGSQGHAHACNLKDS--GVDVTVGLRSGSATVAKAEAH-------------------GLKVA-DVKTAVAAAD 74 (338)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT--TCCEEEECCTTCHHHHHHHHT-------------------TCEEE-CHHHHHHTCS
T ss_pred CEEEEECchHHHHHHHHHHHHC--cCEEEEEECChHHHHHHHHHC-------------------CCEEc-cHHHHHhcCC
Confidence 7999999999999999999998 8999999998765 4433321 23444 7777889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHH-HHHhhcCCCCEEEEeeCCccccHHHHHHHHHhcc-C-CCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR-VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-K-GIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~-~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~-~-g~~~~v~~~Pe 157 (362)
+||+|||.+ ...++++ ++.++++++++|++.+++.. . ++... . +.+ ++..+|
T Consensus 75 vVilavp~~---------------~~~~v~~~~i~~~l~~~~ivi~~~gv~~-----~---~~~~~~~~~~~-vv~~~P- 129 (338)
T 1np3_A 75 VVMILTPDE---------------FQGRLYKEEIEPNLKKGATLAFAHGFSI-----H---YNQVVPRADLD-VIMIAP- 129 (338)
T ss_dssp EEEECSCHH---------------HHHHHHHHHTGGGCCTTCEEEESCCHHH-----H---TTSSCCCTTCE-EEEEEE-
T ss_pred EEEEeCCcH---------------HHHHHHHHHHHhhCCCCCEEEEcCCchh-----H---HHhhcCCCCcE-EEeccC-
Confidence 999999842 2466777 88889999998886443221 1 11111 1 233 344567
Q ss_pred ccccCccccccC----CCCeE-EEecCCCcchHHHHHHHHHHHhccCCCCc--EEeCChh-HHHHHHHHHh
Q 017997 158 FLAEGTAIQDLF----NPDRV-LIGGRETPEGQKAVKALKDVYAHWVPEDR--ILTTNLW-SAELSKLAAN 220 (362)
Q Consensus 158 ~~~~g~a~~~~~----~~~~v-iiG~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~-~ae~~Kl~~N 220 (362)
..|+.+..+++ ..+.+ ...... ++++.+.+..+++.++. .+ +..+++. ..+...+.++
T Consensus 130 -~gp~~a~~~l~~~G~g~~~ii~~~~~~---~~~a~~~~~~l~~~lG~-~~agv~~~~~~~~~~~~~~~s~ 195 (338)
T 1np3_A 130 -KAPGHTVRSEFVKGGGIPDLIAIYQDA---SGNAKNVALSYACGVGG-GRTGIIETTFKDETETDLFGEQ 195 (338)
T ss_dssp -SSCSHHHHHHHHTTCCCCEEEEEEECS---SSCHHHHHHHHHHHTTH-HHHCEEECCHHHHHHHHHHHHH
T ss_pred -CCCchhHHHHHhccCCCeEEEEecCCC---CHHHHHHHHHHHHHcCC-CccceEeechhcccchHHHHHH
Confidence 45555443322 22233 222221 35678889999998861 13 5666653 4455566555
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-12 Score=112.70 Aligned_cols=169 Identities=17% Similarity=0.090 Sum_probs=102.9
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+|||+|||+|.||..+|..|++. |++|+++|+++++.+.+.+. ++..+ +..++++++|
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~-------------------g~~~~-~~~~~~~~~D 85 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGS--GFKVVVGSRNPKRTARLFPS-------------------AAQVT-FQEEAVSSPE 85 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHSBT-------------------TSEEE-EHHHHTTSCS
T ss_pred CCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-------------------CCcee-cHHHHHhCCC
Confidence 47999999999999999999998 89999999999998887542 13333 5667789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCc-cccHH---HHHHHHHhccCCCceEEeeCC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP-VKTAE---AIEKILTHNSKGIKFQILSNP 156 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~-~gt~~---~l~~~l~~~~~g~~~~v~~~P 156 (362)
+||+|+|.. .. .++++ +.+.+ ++++|++.|+.. ..+.+ ...+.+.+..++..+.-..++
T Consensus 86 vVi~av~~~-~~--------------~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~~vv~~~n~ 148 (215)
T 2vns_A 86 VIFVAVFRE-HY--------------SSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNV 148 (215)
T ss_dssp EEEECSCGG-GS--------------GGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTSEEEEECTT
T ss_pred EEEECCChH-HH--------------HHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCCCeEEecccc
Confidence 999999842 11 22222 44455 678888766643 22211 112223332211111111222
Q ss_pred cc---cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHH
Q 017997 157 EF---LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKL 217 (362)
Q Consensus 157 e~---~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl 217 (362)
.. ..++.. . .....++.| . +++..+.++++|+.++. ..++.++++.+.+.+-
T Consensus 149 ~~~~~~~~~~~-~--g~~~~~~~g-~----~~~~~~~v~~ll~~~G~-~~~~~g~~~~~~~~e~ 203 (215)
T 2vns_A 149 ISAWTLQAGPR-D--GNRQVPICG-D----QPEAKRAVSEMALAMGF-MPVDMGSLASAWEVEA 203 (215)
T ss_dssp BCHHHHHTCSC-S--SCCEEEEEE-S----CHHHHHHHHHHHHHTTC-EEEECCSGGGHHHHHH
T ss_pred ccHhHhccccc-C--CceeEEEec-C----CHHHHHHHHHHHHHcCC-ceEeecchhhhhHhhh
Confidence 11 112211 1 111234444 3 27889999999999873 4556678888777663
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-12 Score=120.38 Aligned_cols=199 Identities=15% Similarity=0.095 Sum_probs=117.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||+.+|..|+ + |++|++|++++++++.+++.+..+..++.. . ...+..+ .++...+|+
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~--g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~-~-----~~~~~~~---~~~~~~~D~ 70 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-L--YHDVTVVTRRQEQAAAIQSEGIRLYKGGEE-F-----RADCSAD---TSINSDFDL 70 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T--TSEEEEECSCHHHHHHHHHHCEEEEETTEE-E-----EECCEEE---SSCCSCCSE
T ss_pred CEEEEECCCHHHHHHHHHHh-c--CCceEEEECCHHHHHHHHhCCceEecCCCe-e-----ccccccc---ccccCCCCE
Confidence 89999999999999999999 8 999999999999999887643322211110 0 0011111 124678999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCce--EEee-CCcc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF--QILS-NPEF 158 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~--~v~~-~Pe~ 158 (362)
||+|||.. .+.++++.+.+. .+++ |+. -....+..+.+ ++..+...+ .+.+ +-.+
T Consensus 71 vilavK~~---------------~~~~~l~~l~~~-~~~~-ivs-~~nGi~~~e~l----~~~~~~~~vl~g~~~~~a~~ 128 (307)
T 3ego_A 71 LVVTVKQH---------------QLQSVFSSLERI-GKTN-ILF-LQNGMGHIHDL----KDWHVGHSIYVGIVEHGAVR 128 (307)
T ss_dssp EEECCCGG---------------GHHHHHHHTTSS-CCCE-EEE-CCSSSHHHHHH----HTCCCSCEEEEEEECCEEEE
T ss_pred EEEEeCHH---------------HHHHHHHHhhcC-CCCe-EEE-ecCCccHHHHH----HHhCCCCcEEEEEEeeceEE
Confidence 99999842 256777777664 4555 432 22222322333 332211111 1222 2234
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcE-EeCChhHHHHHHHHHhHH---------------
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRI-LTTNLWSAELSKLAANAF--------------- 222 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ae~~Kl~~N~~--------------- 222 (362)
..||...+.- ..++.+|..+.. .+..+.+.++|...+ .++ ...|+....|.|++-|+.
T Consensus 129 ~~pg~v~~~~--~g~~~iG~~~~~--~~~~~~l~~~l~~ag--~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l 202 (307)
T 3ego_A 129 KSDTAVDHTG--LGAIKWSAFDDA--EPDRLNILFQHNHSD--FPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGEL 202 (307)
T ss_dssp CSSSEEEEEE--CCCEEEEECTTC--CGGGGTTTTSSCCTT--SCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHH
T ss_pred CCCCEEEEee--eeeEEEEeCCCC--cHHHHHHHHHhhhCC--CCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchh
Confidence 5566654332 235678876432 122333444444322 234 457999999999998872
Q ss_pred ------HHHHHHHHHHHHHHHHHh
Q 017997 223 ------LAQRISSVNAMSALCEAT 240 (362)
Q Consensus 223 ------~~~~ia~~nE~~~l~~~~ 240 (362)
+.+..+.+.|+..+++..
T Consensus 203 ~~~~~~~~l~~~l~~E~~~va~~~ 226 (307)
T 3ego_A 203 LTTPAYLAFMKLVFQEACRILKLE 226 (307)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHTCS
T ss_pred hcChhHHHHHHHHHHHHHHHHhcc
Confidence 345567888888887654
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=120.24 Aligned_cols=183 Identities=13% Similarity=0.108 Sum_probs=106.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V-~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|||+|.||.++|..|+++ ++| .+||+++++.+.+.+. .+. .+++++++++++
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~---~~v~~v~~~~~~~~~~~~~~-----------------~g~--~~~~~~~~~~~~ 59 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR---YEIGYILSRSIDRARNLAEV-----------------YGG--KAATLEKHPELN 59 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-------CCCEECSSHHHHHHHHHH-----------------TCC--CCCSSCCCCC--
T ss_pred CceEEEEeCCHHHHHHHHHHHHc---CcEEEEEeCCHHHHHHHHHH-----------------cCC--ccCCHHHHHhcC
Confidence 47999999999999999999864 788 5999999998887641 011 445666667899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|+||+|||... +.++++++. .++++|+..|+..+... +++. +....+|...
T Consensus 60 DvVilav~~~~---------------~~~v~~~l~---~~~~ivi~~s~~~~~~~------l~~~-----~~~~~~p~~~ 110 (276)
T 2i76_A 60 GVVFVIVPDRY---------------IKTVANHLN---LGDAVLVHCSGFLSSEI------FKKS-----GRASIHPNFS 110 (276)
T ss_dssp -CEEECSCTTT---------------HHHHHTTTC---CSSCCEEECCSSSCGGG------GCSS-----SEEEEEECSC
T ss_pred CEEEEeCChHH---------------HHHHHHHhc---cCCCEEEECCCCCcHHH------HHHh-----hccccchhhh
Confidence 99999998531 345555543 57788887775433221 1111 1222334332
Q ss_pred ccCc--cccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChh---HHHHHHHHHhHHHHHHHHHHHHHH
Q 017997 160 AEGT--AIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLW---SAELSKLAANAFLAQRISSVNAMS 234 (362)
Q Consensus 160 ~~g~--a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (362)
.+|. ....+...+ +++++. ++..+.++++++.++. .++.+.... .....+++.|... .+++|+.
T Consensus 111 ~~g~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~l~~~lG~-~~~~v~~~~~~~~~~~~~l~~n~~~----~~~~~a~ 179 (276)
T 2i76_A 111 FSSLEKALEMKDQIV-FGLEGD-----ERGLPIVKKIAEEISG-KYFVIPSEKKKAYHLAAVIASNFPV----ALAYLSK 179 (276)
T ss_dssp C--CTTGGGCGGGCC-EEECCC-----TTTHHHHHHHHHHHCS-CEEECCGGGHHHHHHHHHHHHTTHH----HHHHHHH
T ss_pred cCCCchhHHHhCCCe-EEEEeC-----hHHHHHHHHHHHHhCC-CEEEECHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 2221 111122222 344544 3458889999999862 345444322 2234477777432 4567777
Q ss_pred HHHHHhCCCHH
Q 017997 235 ALCEATGANVS 245 (362)
Q Consensus 235 ~l~~~~g~d~~ 245 (362)
.++++.|++.+
T Consensus 180 ~~~~~~Gl~~~ 190 (276)
T 2i76_A 180 RIYTLLGLDEP 190 (276)
T ss_dssp HHHHTTTCSCH
T ss_pred HHHHHcCCChH
Confidence 88999999877
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.34 E-value=6.4e-12 Score=118.20 Aligned_cols=135 Identities=13% Similarity=0.152 Sum_probs=96.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|+|+|||+|.||..+|..|+.. |++|++||+++++.+.+.+. .+..+ +++++++++|+
T Consensus 156 ~~vgIIG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~-------------------g~~~~-~l~e~l~~aDv 213 (330)
T 2gcg_A 156 STVGIIGLGRIGQAIARRLKPF--GVQRFLYTGRQPRPEEAAEF-------------------QAEFV-STPELAAQSDF 213 (330)
T ss_dssp CEEEEECCSHHHHHHHHHHGGG--TCCEEEEESSSCCHHHHHTT-------------------TCEEC-CHHHHHHHCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCcchhHHHhc-------------------CceeC-CHHHHHhhCCE
Confidence 6899999999999999999988 99999999987655544321 23444 77788899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC---CCceEEeeCCcc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK---GIKFQILSNPEF 158 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe~ 158 (362)
|++|+|.+.... .+.. +.+.+.++++.++++.|+.++...+.+.+.+++... +.|+ +.||.
T Consensus 214 Vi~~vp~~~~t~-----------~~i~--~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv---~~~ep 277 (330)
T 2gcg_A 214 IVVACSLTPATE-----------GLCN--KDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDV---TSPEP 277 (330)
T ss_dssp EEECCCCCTTTT-----------TCBS--HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESC---CSSSS
T ss_pred EEEeCCCChHHH-----------HhhC--HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCC---CCCCC
Confidence 999998653221 1111 345567889999999999988888888887876321 2332 57777
Q ss_pred cccCccccccCCCCeEEEe
Q 017997 159 LAEGTAIQDLFNPDRVLIG 177 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG 177 (362)
..+++.+ +..+.+++.
T Consensus 278 l~~~~~l---~~~~nvi~t 293 (330)
T 2gcg_A 278 LPTNHPL---LTLKNCVIL 293 (330)
T ss_dssp CCTTCGG---GGCTTEEEC
T ss_pred CCCCChh---hcCCCEEEC
Confidence 6665544 444556653
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.7e-11 Score=103.89 Aligned_cols=155 Identities=9% Similarity=0.037 Sum_probs=101.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||+++|..|.++ ||+|++||+. ++ +++||
T Consensus 7 mkI~IIG~G~~G~sLA~~L~~~--G~~V~~~~~~-------------------------------------~~-~~~aD- 45 (232)
T 3dfu_A 7 LRVGIFDDGSSTVNMAEKLDSV--GHYVTVLHAP-------------------------------------ED-IRDFE- 45 (232)
T ss_dssp CEEEEECCSCCCSCHHHHHHHT--TCEEEECSSG-------------------------------------GG-GGGCS-
T ss_pred cEEEEEeeCHHHHHHHHHHHHC--CCEEEEecCH-------------------------------------HH-hccCC-
Confidence 8999999999999999999999 9999999972 11 46788
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-CccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
|+|||.. .+.++++++.++++++++|+.+|. ++....+.+ ... |. .++..+|-+..
T Consensus 46 -ilavP~~---------------ai~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~----~~~--g~-~fvg~HPm~g~ 102 (232)
T 3dfu_A 46 -LVVIDAH---------------GVEGYVEKLSAFARRGQMFLHTSLTHGITVMDPL----ETS--GG-IVMSAHPIGQD 102 (232)
T ss_dssp -EEEECSS---------------CHHHHHHHHHTTCCTTCEEEECCSSCCGGGGHHH----HHT--TC-EEEEEEEEETT
T ss_pred -EEEEcHH---------------HHHHHHHHHHHhcCCCCEEEEECCcCHHHHHHHH----HhC--CC-cEEEeeeCCCC
Confidence 9998843 257788899999999999998664 333322322 222 22 35667885321
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (362)
+.++.+++ ++..+.++++++.++ ..+..++....... ++.-......++++++...+.+.
T Consensus 103 -----------~~~i~a~d-----~~a~~~l~~L~~~lG--~~vv~~~~~~hd~~-~AAvsh~nhLv~L~~~A~~ll~~ 162 (232)
T 3dfu_A 103 -----------RWVASALD-----ELGETIVGLLVGELG--GSIVEIADDKRAQL-AAALTYAGFLSTLQRDASYFLDE 162 (232)
T ss_dssp -----------EEEEEESS-----HHHHHHHHHHHHHTT--CEECCCCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------ceeeeCCC-----HHHHHHHHHHHHHhC--CEEEEeCHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 13444432 778999999999986 35555554332222 11111233345666666666644
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.1e-12 Score=117.32 Aligned_cols=133 Identities=19% Similarity=0.174 Sum_probs=94.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|+|+|||+|.||..+|..|+.. |++|++||+++++ +...+. .+.+ +++++++++||+
T Consensus 151 ~~vgIIG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~-~~~~~~-------------------g~~~-~~l~~~l~~aDv 207 (334)
T 2dbq_A 151 KTIGIIGLGRIGQAIAKRAKGF--NMRILYYSRTRKE-EVEREL-------------------NAEF-KPLEDLLRESDF 207 (334)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCH-HHHHHH-------------------CCEE-CCHHHHHHHCSE
T ss_pred CEEEEEccCHHHHHHHHHHHhC--CCEEEEECCCcch-hhHhhc-------------------Cccc-CCHHHHHhhCCE
Confidence 6899999999999999999988 9999999998766 433210 1233 477788899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC-C--CceEEeeCCcc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-G--IKFQILSNPEF 158 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~-g--~~~~v~~~Pe~ 158 (362)
|++|+|.+.... .+.. +.+.+.+++++++++.|+.++...+.+.+.+++... | .|+ +.||.
T Consensus 208 Vil~vp~~~~t~-----------~~i~--~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv---~~~EP 271 (334)
T 2dbq_A 208 VVLAVPLTRETY-----------HLIN--EERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDV---FEEEP 271 (334)
T ss_dssp EEECCCCCTTTT-----------TCBC--HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESC---CSSSS
T ss_pred EEECCCCChHHH-----------HhhC--HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecC---CCCCC
Confidence 999998654221 1111 345667899999999999888888888887876321 2 332 56664
Q ss_pred cccCccccccCCCCeEEEe
Q 017997 159 LAEGTAIQDLFNPDRVLIG 177 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG 177 (362)
.+.+.++..+++++.
T Consensus 272 ----~~~~~L~~~~~vi~t 286 (334)
T 2dbq_A 272 ----YYNEELFKLDNVVLT 286 (334)
T ss_dssp ----CCCHHHHHCTTEEEC
T ss_pred ----CCCchhhcCCCEEEC
Confidence 223445666677763
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.8e-13 Score=116.47 Aligned_cols=166 Identities=15% Similarity=0.159 Sum_probs=100.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||..+|..|.+. |++|++||++++ .+.+.. ..+..+ +..++++++|+
T Consensus 20 ~~I~iIG~G~mG~~la~~L~~~--G~~V~~~~r~~~-~~~~~~-------------------~g~~~~-~~~~~~~~aDv 76 (201)
T 2yjz_A 20 GVVCIFGTGDFGKSLGLKMLQC--GYSVVFGSRNPQ-VSSLLP-------------------RGAEVL-CYSEAASRSDV 76 (201)
Confidence 7899999999999999999998 899999999876 433321 012333 55666889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcc------ccHHHHHHHHHhccCCCceEEeeC
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPV------KTAEAIEKILTHNSKGIKFQILSN 155 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~------gt~~~l~~~l~~~~~g~~~~v~~~ 155 (362)
||+|||.+. +.+++ ++.+ +.++++||+.++..+ +..+.+.+.+..... .. .+...
T Consensus 77 Vilav~~~~---------------~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~~~v-vr-a~~n~ 137 (201)
T 2yjz_A 77 IVLAVHREH---------------YDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGAHV-VK-AFNTI 137 (201)
Confidence 999998531 12333 3433 346778887776433 222333333322100 00 01111
Q ss_pred Cc-ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHH
Q 017997 156 PE-FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLA 218 (362)
Q Consensus 156 Pe-~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~ 218 (362)
|. ...+|.. . .+...++.|++ ++..+.++++|+.++. ..++.++++.+.+.|.+
T Consensus 138 ~a~~~~~g~l-~--g~~~~~~~g~~-----~~~~~~v~~ll~~~G~-~~~~~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 138 SAWALQSGTL-D--ASRQVFVCGND-----SKAKDRVMDIARTLGL-TPLDQGSLVAAKEIENY 192 (201)
Confidence 21 1222321 0 11112455543 5778899999999873 45667788888888754
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-11 Score=113.17 Aligned_cols=121 Identities=22% Similarity=0.240 Sum_probs=85.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHh-hhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~-~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|+||.++|..|+.++.|++|++||+++++++.+... +.+... .....++++++|+++ +++||
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~--------l~~~~~~~~~~~~i~~t~d~~~-l~~aD 71 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALD--------MYESGPVGLFDTKVTGSNDYAD-TANSD 71 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHH--------HHTTHHHHTCCCEEEEESCGGG-GTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHh--------HHhhhhcccCCcEEEECCCHHH-HCCCC
Confidence 79999999999999999999853379999999999888865421 000000 001345788889876 99999
Q ss_pred EEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHH
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~-----~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l 137 (362)
+||+|+|+|....+ ...|+ +.++++.+.+.++. ++.+|++- |.|+++...+
T Consensus 72 vViiav~~p~~~g~----~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~-tNP~~~~~~~ 127 (310)
T 1guz_A 72 IVIITAGLPRKPGM----TREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVV-SNPLDIMTHV 127 (310)
T ss_dssp EEEECCSCCCCTTC----CHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEEC-CSSHHHHHHH
T ss_pred EEEEeCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEE-cCchHHHHHH
Confidence 99999998865421 13344 56678888888885 55555443 7788876444
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-11 Score=115.97 Aligned_cols=109 Identities=15% Similarity=0.093 Sum_probs=81.9
Q ss_pred ceEEEEcCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la-~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|+|||+|.||..+|..+. .. |++|++||+++++.+...+. .+..++++++++++||
T Consensus 164 ~~vgIIG~G~IG~~vA~~l~~~~--G~~V~~~d~~~~~~~~~~~~-------------------g~~~~~~l~ell~~aD 222 (348)
T 2w2k_A 164 HVLGAVGLGAIQKEIARKAVHGL--GMKLVYYDVAPADAETEKAL-------------------GAERVDSLEELARRSD 222 (348)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSCCCHHHHHHH-------------------TCEECSSHHHHHHHCS
T ss_pred CEEEEEEECHHHHHHHHHHHHhc--CCEEEEECCCCcchhhHhhc-------------------CcEEeCCHHHHhccCC
Confidence 58999999999999999998 77 99999999987655443220 1344557888889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
+|++|+|..... ..+.. +.+.+.++++.++++.|+.++...+.+.+.+++.
T Consensus 223 vVil~vp~~~~t-----------~~li~--~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~ 273 (348)
T 2w2k_A 223 CVSVSVPYMKLT-----------HHLID--EAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273 (348)
T ss_dssp EEEECCCCSGGG-----------TTCBC--HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred EEEEeCCCChHH-----------HHHhh--HHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhC
Confidence 999999864321 11111 2445678999999999999888888888888763
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-10 Score=108.07 Aligned_cols=123 Identities=19% Similarity=0.238 Sum_probs=86.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|+||.++|..|+.+ |+ +|++||+++++++..... +.+.... ....++++|+|+++++++|
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~--g~~~V~L~D~~~~~~~~~~~~--------l~~~~~~~~~~~~i~~t~d~~ea~~~a 79 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALR--ELADVVLYDVVKGMPEGKALD--------LSHVTSVVDTNVSVRAEYSYEAALTGA 79 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSHHHHHHHH--------HHHHHHHTTCCCCEEEECSHHHHHTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECChhHHHHHHHH--------HHhhhhccCCCCEEEEeCCHHHHhCCC
Confidence 6999999999999999999998 88 999999999888763211 1111111 1235688899998789999
Q ss_pred cEEEEeccCCCCCCCCCCC--CCCC-----hHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHH
Q 017997 80 DIVFVSVNTPTKTQGLGAG--KAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~--~~~d-----~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l 137 (362)
|+||+++++|... |.... ...| ...+++.++.|.++. ++.++++ .|.|.++.-.+
T Consensus 80 DiVi~a~g~p~~~-g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~-~tNP~~~~t~~ 141 (331)
T 1pzg_A 80 DCVIVTAGLTKVP-GKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIV-VTNPLDCMVKV 141 (331)
T ss_dssp SEEEECCSCSSCT-TCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEE-CCSSHHHHHHH
T ss_pred CEEEEccCCCCCC-CcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEE-EcCchHHHHHH
Confidence 9999999777543 10000 1233 244678888888886 6666654 57888876444
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.4e-10 Score=105.89 Aligned_cols=123 Identities=19% Similarity=0.215 Sum_probs=84.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|+||.++|..|+.. |+ +|+++|+++++++..... +.+.... ....++++++|+ +++++|
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~--g~~~v~L~Di~~~~l~~~~~~--------l~~~~~~~~~~~~i~~t~d~-~al~~a 73 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQK--NLGDVVLFDIVKNMPHGKALD--------TSHTNVMAYSNCKVSGSNTY-DDLAGA 73 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSSHHHHHHHH--------HHTHHHHHTCCCCEEEECCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHH--------HHhhhhhcCCCcEEEECCCH-HHhCCC
Confidence 7999999999999999999998 88 999999999887754321 1111111 123568888898 679999
Q ss_pred cEEEEeccCCCCCCCCC-CCCCCCh-----HHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHH
Q 017997 80 DIVFVSVNTPTKTQGLG-AGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (362)
Q Consensus 80 DvVii~vptp~~~~g~~-~~~~~d~-----~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l 137 (362)
|+||+++++|......+ +....|+ ..++++++.|.++. ++.++++- |.|.++.-.+
T Consensus 74 D~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~-tNP~~~~t~~ 135 (322)
T 1t2d_A 74 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVV-TNPVDVMVQL 135 (322)
T ss_dssp SEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEEC-SSSHHHHHHH
T ss_pred CEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe-cCChHHHHHH
Confidence 99999998776431100 0001222 45678888888887 67766553 6777765443
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-10 Score=109.48 Aligned_cols=104 Identities=15% Similarity=0.158 Sum_probs=78.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||++++..+ + ....+++++++++||+
T Consensus 165 ~~vgIIG~G~iG~~vA~~l~~~--G~~V~~~dr~~~~~~-----------------------g-~~~~~~l~ell~~aDv 218 (333)
T 3ba1_A 165 KRVGIIGLGRIGLAVAERAEAF--DCPISYFSRSKKPNT-----------------------N-YTYYGSVVELASNSDI 218 (333)
T ss_dssp CCEEEECCSHHHHHHHHHHHTT--TCCEEEECSSCCTTC-----------------------C-SEEESCHHHHHHTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCchhcc-----------------------C-ceecCCHHHHHhcCCE
Confidence 5899999999999999999987 999999999754311 1 2345678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|..... ..+.. ++..+.+++++++|+.|+..+-.++.+.+.+++.
T Consensus 219 Vil~vP~~~~t-----------~~li~--~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g 268 (333)
T 3ba1_A 219 LVVACPLTPET-----------THIIN--REVIDALGPKGVLINIGRGPHVDEPELVSALVEG 268 (333)
T ss_dssp EEECSCCCGGG-----------TTCBC--HHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEecCCChHH-----------HHHhh--HHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcC
Confidence 99999853221 11110 2344567899999999998888888888878764
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.8e-10 Score=104.66 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=83.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|+||.++|..|+.+ |+ +|++||+++++++..... +.+.... ....++++++|+ +++++|
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~--g~~~V~L~Di~~~~l~~~~~~--------l~~~~~~~~~~~~i~~t~d~-~al~~a 83 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQK--DLGDVYMFDIIEGVPQGKALD--------LNHCMALIGSPAKIFGENNY-EYLQNS 83 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSTTHHHHHHHH--------HHHHHHHHTCCCCEEEESCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHH--------HHhHhhccCCCCEEEECCCH-HHHCCC
Confidence 6899999999999999999998 88 999999999888753211 1111111 124568898998 679999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhcCCCCEEEEeeCCccccHH
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~-----~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~ 135 (362)
|+||+++++|... | ....|+ ..++++++++.++. ++.++++- |.|.++.-
T Consensus 84 D~VI~avg~p~k~-g---~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~-tNP~~~~t 138 (328)
T 2hjr_A 84 DVVIITAGVPRKP-N---MTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICI-TNPLDAMV 138 (328)
T ss_dssp SEEEECCSCCCCT-T---CCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC-CSSHHHHH
T ss_pred CEEEEcCCCCCCC-C---CchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEe-cCchHHHH
Confidence 9999999877643 1 112333 45677888888887 66776554 55666543
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=107.39 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=80.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||.++|..+... |++|++||++++..+ .....+++++++++||+
T Consensus 123 ~tvGIIGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~------------------------~~~~~~~l~ell~~aDi 176 (290)
T 3gvx_A 123 KALGILGYGGIGRRVAHLAKAF--GMRVIAYTRSSVDQN------------------------VDVISESPADLFRQSDF 176 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSCCCTT------------------------CSEECSSHHHHHHHCSE
T ss_pred chheeeccCchhHHHHHHHHhh--CcEEEEEeccccccc------------------------cccccCChHHHhhccCe
Confidence 5899999999999999999988 999999999753211 12345688888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++|+|...... .+ .-+...+.++++.++|+.|+.++-..+.+.+.+++.
T Consensus 177 V~l~~P~t~~t~-----------~l--i~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g 226 (290)
T 3gvx_A 177 VLIAIPLTDKTR-----------GM--VNSRLLANARKNLTIVNVARADVVSKPDMIGFLKER 226 (290)
T ss_dssp EEECCCCCTTTT-----------TC--BSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred EEEEeeccccch-----------hh--hhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhc
Confidence 999998432211 11 114566788999999999998888888888888764
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.12 E-value=3e-10 Score=106.83 Aligned_cols=132 Identities=12% Similarity=0.158 Sum_probs=90.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||++++. +...+ ..+..+ ++++++++||+
T Consensus 147 ~~vgIIG~G~iG~~vA~~l~~~--G~~V~~~d~~~~~-~~~~~-------------------~g~~~~-~l~e~l~~aDi 203 (333)
T 2d0i_A 147 KKVGILGMGAIGKAIARRLIPF--GVKLYYWSRHRKV-NVEKE-------------------LKARYM-DIDELLEKSDI 203 (333)
T ss_dssp CEEEEECCSHHHHHHHHHHGGG--TCEEEEECSSCCH-HHHHH-------------------HTEEEC-CHHHHHHHCSE
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEECCCcch-hhhhh-------------------cCceec-CHHHHHhhCCE
Confidence 5899999999999999999988 9999999998765 32221 013443 77788899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhcc-C--CCceEEeeCCcc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-K--GIKFQILSNPEF 158 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~-~--g~~~~v~~~Pe~ 158 (362)
|++|+|..... ..+.. +.+.+.++++ ++++.|+.++-..+.+.+.+++.. . |.|+ +.||.
T Consensus 204 Vil~vp~~~~t-----------~~~i~--~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv---~~~EP 266 (333)
T 2d0i_A 204 VILALPLTRDT-----------YHIIN--EERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDV---FEKEP 266 (333)
T ss_dssp EEECCCCCTTT-----------TTSBC--HHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESC---CSSSS
T ss_pred EEEcCCCChHH-----------HHHhC--HHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecC---CCCCC
Confidence 99999865221 11111 2344567889 999999888777777877776632 1 2332 56554
Q ss_pred cccCccccccCCCC-eEEEe
Q 017997 159 LAEGTAIQDLFNPD-RVLIG 177 (362)
Q Consensus 159 ~~~g~a~~~~~~~~-~viiG 177 (362)
.. . +.++..+ .+++.
T Consensus 267 ~~-~---~~L~~~~~nvilt 282 (333)
T 2d0i_A 267 VR-E---HELFKYEWETVLT 282 (333)
T ss_dssp CS-C---CGGGGCTTTEEEC
T ss_pred CC-C---chHHcCCCCEEEc
Confidence 32 2 2455556 67654
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=5.7e-10 Score=103.90 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=80.4
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhhc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G--~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~ 77 (362)
||||+|||+|.||.++|..|+++ | ++|++||+++++++.+.... ..... ......+. ++|+ ++++
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~--g~~~~V~l~d~~~~~~~~~~~~l--------~~~~~-~~~~~~~~~~~d~-~~~~ 68 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQ--GVADDYVFIDANEAKVKADQIDF--------QDAMA-NLEAHGNIVINDW-AALA 68 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSHHHHHHHHHHH--------HHHGG-GSSSCCEEEESCG-GGGT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEcCCHHHHHHHHHHH--------Hhhhh-hcCCCeEEEeCCH-HHhC
Confidence 78999999999999999999998 7 89999999999888765310 00000 01112333 5677 5699
Q ss_pred CCcEEEEeccCCCC----CCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHH
Q 017997 78 EADIVFVSVNTPTK----TQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (362)
Q Consensus 78 ~aDvVii~vptp~~----~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l 137 (362)
+||+||+|+|.|.. . |. ++ ..++..+.++++.+.++. ++.+|++ .|.|.++...+
T Consensus 69 ~aDvViiav~~~~~~~~~~-g~--~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~-~tNp~~~~~~~ 131 (309)
T 1hyh_A 69 DADVVISTLGNIKLQQDNP-TG--DRFAELKFTSSMVQSVGTNLKESG-FHGVLVV-ISNPVDVITAL 131 (309)
T ss_dssp TCSEEEECCSCGGGTC----------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEE-CSSSHHHHHHH
T ss_pred CCCEEEEecCCcccCCCCC-CC--CHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEE-EcCcHHHHHHH
Confidence 99999999997642 1 00 00 012234577788888876 5666655 67777764433
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.8e-10 Score=103.81 Aligned_cols=108 Identities=13% Similarity=0.093 Sum_probs=81.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||+++........ .++..+++++++++||+
T Consensus 161 ~tvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~--------------------g~~~~~~l~ell~~aDi 218 (352)
T 3gg9_A 161 QTLGIFGYGKIGQLVAGYGRAF--GMNVLVWGRENSKERARAD--------------------GFAVAESKDALFEQSDV 218 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSHHHHHHHHHT--------------------TCEECSSHHHHHHHCSE
T ss_pred CEEEEEeECHHHHHHHHHHHhC--CCEEEEECCCCCHHHHHhc--------------------CceEeCCHHHHHhhCCE
Confidence 5899999999999999999887 9999999998643222222 24556688888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|..... ..+. -+...+.++++.++|+.|..++-..+.+.+.|++.
T Consensus 219 V~l~~Plt~~t-----------~~li--~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g 268 (352)
T 3gg9_A 219 LSVHLRLNDET-----------RSII--TVADLTRMKPTALFVNTSRAELVEENGMVTALNRG 268 (352)
T ss_dssp EEECCCCSTTT-----------TTCB--CHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHT
T ss_pred EEEeccCcHHH-----------HHhh--CHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhC
Confidence 99999853221 1111 13456778999999999987776777787778764
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=5.6e-10 Score=104.39 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=78.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~-~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|+|||+|.||..+|..+... |++|++||+ +++.......+ ....+++++++++||
T Consensus 147 ~~vgIIG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~~g--------------------~~~~~~l~ell~~aD 204 (320)
T 1gdh_A 147 KTLGIYGFGSIGQALAKRAQGF--DMDIDYFDTHRASSSDEASYQ--------------------ATFHDSLDSLLSVSQ 204 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSCCCHHHHHHHT--------------------CEECSSHHHHHHHCS
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCcChhhhhhcC--------------------cEEcCCHHHHHhhCC
Confidence 5899999999999999999877 999999999 76553221111 344557888889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~-~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
+|++|+|..... ...+ +...+.++++.++|+.|+..+-..+.+.+.+++.
T Consensus 205 vVil~~p~~~~t--------------~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g 255 (320)
T 1gdh_A 205 FFSLNAPSTPET--------------RYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAG 255 (320)
T ss_dssp EEEECCCCCTTT--------------TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEEeccCchHH--------------HhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 999999853221 1111 3456778999999998886666667777777664
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=9.8e-10 Score=102.27 Aligned_cols=119 Identities=19% Similarity=0.274 Sum_probs=80.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHh-hhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~-~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|+||.++|..|+.. |+ +|+++|+++++++.... ++.+... .....++++++|+ +++++|
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~--g~~~v~L~Di~~~~~~g~~~--------dl~~~~~~~~~~~~i~~t~d~-~a~~~a 71 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAK--ELGDIVLLDIVEGVPQGKAL--------DLYEASPIEGFDVRVTGTNNY-ADTANS 71 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSSSSHHHHHHH--------HHHTTHHHHTCCCCEEEESCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCCeEEEEeCCccHHHHHHH--------hHHHhHhhcCCCeEEEECCCH-HHHCCC
Confidence 6999999999999999999998 76 89999999887764321 1111110 0123468888898 569999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHH
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~-----~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l 137 (362)
|+||+++++|..... ...|+ ..++++.+.+.++. ++.+|++ .|.|.++.-.+
T Consensus 72 D~Vi~a~g~p~~~g~----~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~-~tNPv~~~t~~ 128 (309)
T 1ur5_A 72 DVIVVTSGAPRKPGM----SREDLIKVNADITRACISQAAPLS-PNAVIIM-VNNPLDAMTYL 128 (309)
T ss_dssp SEEEECCCC------------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEE-CCSSHHHHHHH
T ss_pred CEEEEcCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE-cCCchHHHHHH
Confidence 999999998864311 11232 44566777777775 6777665 57888876444
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.5e-10 Score=106.77 Aligned_cols=109 Identities=14% Similarity=0.194 Sum_probs=81.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|+|+|||+|.||..+|..+... |++|++||+++...+...+. .....+++++++++||+
T Consensus 165 ktvGIIG~G~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~l~ell~~aDv 223 (351)
T 3jtm_A 165 KTIGTVGAGRIGKLLLQRLKPF--GCNLLYHDRLQMAPELEKET-------------------GAKFVEDLNEMLPKCDV 223 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHGGG--CCEEEEECSSCCCHHHHHHH-------------------CCEECSCHHHHGGGCSE
T ss_pred CEEeEEEeCHHHHHHHHHHHHC--CCEEEEeCCCccCHHHHHhC-------------------CCeEcCCHHHHHhcCCE
Confidence 6899999999999999999987 99999999975444333220 13455688888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|......+ -. -+...+.++++.++|+.|.-++-..+.+.+.|++.
T Consensus 224 V~l~~Plt~~t~~-----li--------~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g 273 (351)
T 3jtm_A 224 IVINMPLTEKTRG-----MF--------NKELIGKLKKGVLIVNNARGAIMERQAVVDAVESG 273 (351)
T ss_dssp EEECSCCCTTTTT-----CB--------SHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEECCCCCHHHHH-----hh--------cHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhC
Confidence 9999984322110 11 13455678999999999998777778888888764
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.2e-10 Score=104.26 Aligned_cols=107 Identities=17% Similarity=0.192 Sum_probs=79.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||.++|..+... |++|++||+++++...... + ... .+++++++++|+
T Consensus 143 ~~vgIIG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~-------------------g-~~~-~~l~ell~~aDv 199 (313)
T 2ekl_A 143 KTIGIVGFGRIGTKVGIIANAM--GMKVLAYDILDIREKAEKI-------------------N-AKA-VSLEELLKNSDV 199 (313)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSCCHHHHHHT-------------------T-CEE-CCHHHHHHHCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCCcchhHHHhc-------------------C-cee-cCHHHHHhhCCE
Confidence 6899999999999999999988 9999999998765432111 1 233 367788899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++|+|......+ -.+ +...+.++++.++|+.|+.++-..+.+.+.+++.
T Consensus 200 Vvl~~P~~~~t~~-----li~--------~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g 249 (313)
T 2ekl_A 200 ISLHVTVSKDAKP-----IID--------YPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKG 249 (313)
T ss_dssp EEECCCCCTTSCC-----SBC--------HHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTT
T ss_pred EEEeccCChHHHH-----hhC--------HHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcC
Confidence 9999985432110 111 3445668999999999987766677787777764
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-09 Score=102.18 Aligned_cols=107 Identities=8% Similarity=0.093 Sum_probs=79.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||+++...+... .....+++++++++||+
T Consensus 174 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~~---------------------g~~~~~~l~ell~~sDv 230 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAIATRARGF--GLAIHYHNRTRLSHALEE---------------------GAIYHDTLDSLLGASDI 230 (345)
T ss_dssp CEEEEESCSHHHHHHHHHHHTT--TCEEEEECSSCCCHHHHT---------------------TCEECSSHHHHHHTCSE
T ss_pred CEEEEEEeChhHHHHHHHHHHC--CCEEEEECCCCcchhhhc---------------------CCeEeCCHHHHHhhCCE
Confidence 5899999999999999999877 999999999753332211 13455688888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|...... .+. -+...+.++++.++|+.|.-++-..+.+.+.|++.
T Consensus 231 V~l~~Plt~~T~-----------~li--~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g 280 (345)
T 4g2n_A 231 FLIAAPGRPELK-----------GFL--DHDRIAKIPEGAVVINISRGDLINDDALIEALRSK 280 (345)
T ss_dssp EEECSCCCGGGT-----------TCB--CHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEecCCCHHHH-----------HHh--CHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhC
Confidence 999998532211 111 13455678999999999987777777887777664
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-09 Score=100.77 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=78.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||.++|..+... |++|++||+++++ +...+. + +.. .++++++++||+
T Consensus 143 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~-~~~~~~------------------g-~~~-~~l~ell~~aDv 199 (307)
T 1wwk_A 143 KTIGIIGFGRIGYQVAKIANAL--GMNILLYDPYPNE-ERAKEV------------------N-GKF-VDLETLLKESDV 199 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCH-HHHHHT------------------T-CEE-CCHHHHHHHCSE
T ss_pred ceEEEEccCHHHHHHHHHHHHC--CCEEEEECCCCCh-hhHhhc------------------C-ccc-cCHHHHHhhCCE
Confidence 5899999999999999999988 9999999998765 322221 1 233 367788899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++|+|..... ..+. -+...+.++++.++|+.|+.++-..+.+.+.+++.
T Consensus 200 V~l~~p~~~~t-----------~~li--~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g 249 (307)
T 1wwk_A 200 VTIHVPLVEST-----------YHLI--NEERLKLMKKTAILINTSRGPVVDTNALVKALKEG 249 (307)
T ss_dssp EEECCCCSTTT-----------TTCB--CHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEecCCChHH-----------hhhc--CHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence 99999853321 1111 12445668999999999987666667777777764
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.4e-10 Score=105.04 Aligned_cols=135 Identities=16% Similarity=0.226 Sum_probs=90.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||++++..+.+ ......+++++++++||+
T Consensus 138 ktvGIiGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~---------------------~~~~~~~~l~ell~~aDv 194 (324)
T 3evt_A 138 QQLLIYGTGQIGQSLAAKASAL--GMHVIGVNTTGHPADHF---------------------HETVAFTATADALATANF 194 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSCCCCTTC---------------------SEEEEGGGCHHHHHHCSE
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCEEEEECCCcchhHhH---------------------hhccccCCHHHHHhhCCE
Confidence 5899999999999999999988 99999999975432111 012223567788999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC-CCceEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLA 160 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~-g~~~~v~~~Pe~~~ 160 (362)
|++++|..... ..+. -+.....++++.++|+.|+.++-..+.+.+.|++..- |.... ++.+|...
T Consensus 195 V~l~lPlt~~t-----------~~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lD-V~~~EPl~ 260 (324)
T 3evt_A 195 IVNALPLTPTT-----------HHLF--STELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALD-VTEPEPLP 260 (324)
T ss_dssp EEECCCCCGGG-----------TTCB--SHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEES-SCSSSSCC
T ss_pred EEEcCCCchHH-----------HHhc--CHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeC-CCCCCCCC
Confidence 99999843221 1111 1345667899999999999888888888888876432 11111 24566544
Q ss_pred cCccccccCCCCeEEE
Q 017997 161 EGTAIQDLFNPDRVLI 176 (362)
Q Consensus 161 ~g~a~~~~~~~~~vii 176 (362)
+.+. ++..+.+++
T Consensus 261 ~~~p---L~~~~nvil 273 (324)
T 3evt_A 261 TDHP---LWQRDDVLI 273 (324)
T ss_dssp TTCG---GGGCSSEEE
T ss_pred CCCh---hhcCCCEEE
Confidence 3333 344444544
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.3e-09 Score=100.00 Aligned_cols=118 Identities=24% Similarity=0.321 Sum_probs=80.7
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHH--HH--HcCCCCCCCCChHHHHhhhcCCCEEEecCHHh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRIN--AW--NSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~--~l--~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (362)
+|||+|||+|.||.++|..|+.+ |+ +|+++|+++++++ .+ ..+ .++.. ..++..+++.+
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~--g~~~~V~l~d~~~~~~~~~~~~~~~~-~~~~~-----------~~~v~~~~~~~- 71 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQR--GIAREIVLEDIAKERVEAEVLDMQHG-SSFYP-----------TVSIDGSDDPE- 71 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSSHHHHHHHHHHHHHT-GGGST-----------TCEEEEESCGG-
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCChhHHHHHHHHHHhh-hhhcC-----------CeEEEeCCCHH-
Confidence 48999999999999999999998 88 9999999998876 23 222 11110 12456666764
Q ss_pred hhcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHH
Q 017997 75 HVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIE 138 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~ 138 (362)
+++++|+||+|+++|..... ++ ..+...+.++++.+.++ .++++|+. .+.|.+....+.
T Consensus 72 ~~~~aD~Vii~v~~~~~~g~---~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~-~~Np~~~~~~~~ 134 (319)
T 1lld_A 72 ICRDADMVVITAGPRQKPGQ---SRLELVGATVNILKAIMPNLVKV-APNAIYML-ITNPVDIATHVA 134 (319)
T ss_dssp GGTTCSEEEECCCCCCCTTC---CHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEE-CCSSHHHHHHHH
T ss_pred HhCCCCEEEECCCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHh-CCCceEEE-ecCchHHHHHHH
Confidence 58999999999987653200 00 01123455778888876 56776654 567777765554
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.8e-09 Score=99.64 Aligned_cols=118 Identities=25% Similarity=0.344 Sum_probs=79.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|.||.++|..|+.+ |+ +|+++|+++++++.+... +..........++.. +|. +++++|
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~--g~~~~V~l~D~~~~~~~~~~~~--------l~~~~~~~~~~~i~~-~d~-~~~~~a 68 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMK--GFAREMVLIDVDKKRAEGDALD--------LIHGTPFTRRANIYA-GDY-ADLKGS 68 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSHHHHHHHHHH--------HHHHGGGSCCCEEEE-CCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEeCChHHHHHHHHH--------HHhhhhhcCCcEEEe-CCH-HHhCCC
Confidence 7999999999999999999998 88 999999999888765421 000000001123554 465 458999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHH
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d-----~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l 137 (362)
|+||+|+|+|.... ....| ...++++++.+.++. ++.++++ .|.|.++...+
T Consensus 69 DvViiav~~~~~~g----~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~-~tNp~~~~~~~ 125 (319)
T 1a5z_A 69 DVVIVAAGVPQKPG----ETRLQLLGRNARVMKEIARNVSKYA-PDSIVIV-VTNPVDVLTYF 125 (319)
T ss_dssp SEEEECCCCCCCSS----CCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE-CSSSHHHHHHH
T ss_pred CEEEEccCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE-eCCcHHHHHHH
Confidence 99999999875321 00122 233577888888875 5666554 46777765433
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-09 Score=102.24 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=65.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||++++. . .......++++++++||+
T Consensus 172 ktiGIIGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~-----~-------------------~~~~~~~sl~ell~~aDv 225 (340)
T 4dgs_A 172 KRIGVLGLGQIGRALASRAEAF--GMSVRYWNRSTLS-----G-------------------VDWIAHQSPVDLARDSDV 225 (340)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSCCT-----T-------------------SCCEECSSHHHHHHTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCccc-----c-------------------cCceecCCHHHHHhcCCE
Confidence 6899999999999999999887 9999999997543 0 013345678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~-~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|.... + +..+ +...+.++++.++|+.|.-++-..+.+.+.+++.
T Consensus 226 Vil~vP~t~~-----------t---~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g 275 (340)
T 4dgs_A 226 LAVCVAASAA-----------T---QNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSG 275 (340)
T ss_dssp EEECC------------------------CHHHHHHTTTTCEEEECSCC--------------C
T ss_pred EEEeCCCCHH-----------H---HHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcC
Confidence 9999984221 1 2222 4566778999999998887666666776666653
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-09 Score=106.40 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=78.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||.++|..|... |++|++||+++.. +...+. + +..+ ++++++++||+
T Consensus 143 ~~vgIIG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~-~~a~~~------------------g-~~~~-~l~e~~~~aDv 199 (529)
T 1ygy_A 143 KTVGVVGLGRIGQLVAQRIAAF--GAYVVAYDPYVSP-ARAAQL------------------G-IELL-SLDDLLARADF 199 (529)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECTTSCH-HHHHHH------------------T-CEEC-CHHHHHHHCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHhC--CCEEEEECCCCCh-hHHHhc------------------C-cEEc-CHHHHHhcCCE
Confidence 6899999999999999999988 9999999997632 222110 1 2333 67788999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHh
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~-~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~ 143 (362)
|++|+|..... ...+ +.+.+.+++++++++.|+..+-..+.+.+.+++
T Consensus 200 V~l~~P~~~~t--------------~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~ 248 (529)
T 1ygy_A 200 ISVHLPKTPET--------------AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITG 248 (529)
T ss_dssp EEECCCCSTTT--------------TTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred EEECCCCchHH--------------HHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHc
Confidence 99999854211 1122 235677899999999998877777778777765
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.2e-09 Score=99.14 Aligned_cols=115 Identities=18% Similarity=0.330 Sum_probs=74.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHH----HHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINA----WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~----l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
|||+|||+|++|.++|..|+.. |+ +|+++|+++++++. +.... ++. ...+++.+..++
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~--~~~~ev~L~Di~~~~~~g~~~dl~~~~-~~~-------------~~~~i~~~~~~a 71 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALR--QTANELVLIDVFKEKAIGEAMDINHGL-PFM-------------GQMSLYAGDYSD 71 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCSSEEEEECCC---CCHHHHHHTTSC-CCT-------------TCEEEC--CGGG
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCChHHHHHHHHHHHHhH-Hhc-------------CCeEEEECCHHH
Confidence 6899999999999999999998 66 99999999876543 22211 110 123333222456
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHH
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l 137 (362)
+++||+||+++++|... |. ++ ..+...++++.+.+.++. ++.+|++ .|.|+++.-.+
T Consensus 72 ~~~aDvVii~~g~p~k~-g~--~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv-~tNPv~~~~~~ 132 (318)
T 1y6j_A 72 VKDCDVIVVTAGANRKP-GE--TRLDLAKKNVMIAKEVTQNIMKYY-NHGVILV-VSNPVDIITYM 132 (318)
T ss_dssp GTTCSEEEECCCC---------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEE-CSSSHHHHHHH
T ss_pred hCCCCEEEEcCCCCCCC-Cc--CHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEE-ecCcHHHHHHH
Confidence 99999999999988643 10 00 123345678888888884 6777766 58899886544
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.9e-09 Score=98.38 Aligned_cols=107 Identities=15% Similarity=0.026 Sum_probs=78.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||++++.. ...+. + ... .++++++++||+
T Consensus 166 ~tvgIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~-~~~~~------------------g-~~~-~~l~ell~~aDv 222 (335)
T 2g76_A 166 KTLGILGLGRIGREVATRMQSF--GMKTIGYDPIISPE-VSASF------------------G-VQQ-LPLEEIWPLCDF 222 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSSCHH-HHHHT------------------T-CEE-CCHHHHGGGCSE
T ss_pred CEEEEEeECHHHHHHHHHHHHC--CCEEEEECCCcchh-hhhhc------------------C-cee-CCHHHHHhcCCE
Confidence 5899999999999999999877 99999999976542 22210 1 222 367788999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++|+|..... ..+. -+...+.++++.++|+.|+.++-..+.+.+.+++.
T Consensus 223 V~l~~P~t~~t-----------~~li--~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g 272 (335)
T 2g76_A 223 ITVHTPLLPST-----------TGLL--NDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSG 272 (335)
T ss_dssp EEECCCCCTTT-----------TTSB--CHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred EEEecCCCHHH-----------HHhh--CHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhC
Confidence 99999864321 1111 13566778999999999997666667787777764
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-09 Score=99.78 Aligned_cols=116 Identities=17% Similarity=0.290 Sum_probs=79.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHh-hhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~-~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|.||.++|..|+.+ |+ +|++||+++++++..... +..... .....+++.++|+ +++++|
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~--g~~~V~l~D~~~~~~~~~~~~--------l~~~~~~~~~~~~i~~t~d~-~a~~~a 73 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKD--NLADVVLFDIAEGIPQGKALD--------ITHSMVMFGSTSKVIGTDDY-ADISGS 73 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSHHHHHHHH--------HHHHHHHHTCCCCEEEESCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCceEEEEeCCchHHHHHHHH--------HHhhhhhcCCCcEEEECCCH-HHhCCC
Confidence 6999999999999999999999 88 999999998887754210 000000 0113468888888 569999
Q ss_pred cEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 80 DIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|+||+|++.|... |. ++ ..+...++++++.+.++. ++.++++-| .|.+.
T Consensus 74 DiVi~avg~p~~~-g~--~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~s-Np~~~ 126 (317)
T 2ewd_A 74 DVVIITASIPGRP-KD--DRSELLFGNARILDSVAEGVKKYC-PNAFVICIT-NPLDV 126 (317)
T ss_dssp SEEEECCCCSSCC-SS--CGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECC-SSHHH
T ss_pred CEEEEeCCCCCCC-CC--cHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeC-ChHHH
Confidence 9999999887643 10 11 012344677888888886 477776544 34443
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.8e-09 Score=100.59 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=79.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..|... |++|++||++++....... ......+++++++.||+
T Consensus 169 ~tvGIIG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~--------------------g~~~~~~l~ell~~aDv 226 (347)
T 1mx3_A 169 ETLGIIGLGRVGQAVALRAKAF--GFNVLFYDPYLSDGVERAL--------------------GLQRVSTLQDLLFHSDC 226 (347)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECTTSCTTHHHHH--------------------TCEECSSHHHHHHHCSE
T ss_pred CEEEEEeECHHHHHHHHHHHHC--CCEEEEECCCcchhhHhhc--------------------CCeecCCHHHHHhcCCE
Confidence 5899999999999999999887 9999999987542111000 13444578888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|..... ..+.. +...+.++++.++|+.|+.++-..+.+.+.+++.
T Consensus 227 V~l~~P~t~~t-----------~~li~--~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g 276 (347)
T 1mx3_A 227 VTLHCGLNEHN-----------HHLIN--DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEG 276 (347)
T ss_dssp EEECCCCCTTC-----------TTSBS--HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred EEEcCCCCHHH-----------HHHhH--HHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhC
Confidence 99999853221 11111 3455678999999999998888888888888764
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.96 E-value=8.1e-09 Score=97.75 Aligned_cols=134 Identities=13% Similarity=0.130 Sum_probs=89.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||+++.. +...+. .... .+++++++.||+
T Consensus 177 ktvGIIGlG~IG~~vA~~l~~f--G~~V~~~d~~~~~-~~~~~~-------------------g~~~-~~l~ell~~aDv 233 (365)
T 4hy3_A 177 SEIGIVGFGDLGKALRRVLSGF--RARIRVFDPWLPR-SMLEEN-------------------GVEP-ASLEDVLTKSDF 233 (365)
T ss_dssp SEEEEECCSHHHHHHHHHHTTS--CCEEEEECSSSCH-HHHHHT-------------------TCEE-CCHHHHHHSCSE
T ss_pred CEEEEecCCcccHHHHHhhhhC--CCEEEEECCCCCH-HHHhhc-------------------Ceee-CCHHHHHhcCCE
Confidence 5899999999999999998776 9999999997532 222211 1232 478888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC--CCceEEeeCCccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK--GIKFQILSNPEFL 159 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~--g~~~~v~~~Pe~~ 159 (362)
|++++|..... ..+. -+...+.++++.++|+.|.-++-..+.+.+.|++..- +.| ++.+|-.
T Consensus 234 V~l~~Plt~~T-----------~~li--~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~aaLD---V~~~EPl 297 (365)
T 4hy3_A 234 IFVVAAVTSEN-----------KRFL--GAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIVAASD---VYPEEPL 297 (365)
T ss_dssp EEECSCSSCC--------------CC--CHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSEEEES---CCSSSSC
T ss_pred EEEcCcCCHHH-----------Hhhc--CHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCceEEee---CCCCCCC
Confidence 99998854221 1111 1456677899999999998877777888877776421 122 2455544
Q ss_pred ccCccccccCCCCeEEEe
Q 017997 160 AEGTAIQDLFNPDRVLIG 177 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG 177 (362)
.+.+. ++..+.+++.
T Consensus 298 ~~~~p---L~~~~nvilT 312 (365)
T 4hy3_A 298 PLDHP---VRSLKGFIRS 312 (365)
T ss_dssp CTTCG---GGTCTTEEEC
T ss_pred CCCCh---hhcCCCEEEC
Confidence 33333 3444455553
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.9e-09 Score=102.97 Aligned_cols=209 Identities=13% Similarity=0.038 Sum_probs=117.4
Q ss_pred CceEEEEcCChhHHHHHHHHHHc----CCCCeEEEEeCCH-HHHHHHH-cCCCCCCCCChHHHHhhhcCCCEEEecCHHh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALK----CPSIEVAVVDISV-SRINAWN-SDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~----~~G~~V~~~d~~~-~~~~~l~-~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (362)
++||+|||+|.||.++|..|.+. ++|++|++.+++. ...+... .|.... .. .+.++.+
T Consensus 54 iKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~--------------d~--ta~s~aE 117 (525)
T 3fr7_A 54 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEE--------------SG--TLGDIWE 117 (525)
T ss_dssp CSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTT--------------TT--CEEEHHH
T ss_pred CCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEe--------------cC--CCCCHHH
Confidence 47999999999999999999876 3468888665543 2333222 221000 00 1246778
Q ss_pred hhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH-HHHHHHHHhccCCCceEEe
Q 017997 75 HVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA-EAIEKILTHNSKGIKFQIL 153 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~-~~l~~~l~~~~~g~~~~v~ 153 (362)
++++||+||++||.. ...+++++|.++++++++|++.+ |.. ..+.+.......+.+ .+.
T Consensus 118 Aa~~ADVVILaVP~~---------------~~~eVl~eI~p~LK~GaILs~Aa----Gf~I~~le~~~i~~p~dv~-VVr 177 (525)
T 3fr7_A 118 TVSGSDLVLLLISDA---------------AQADNYEKIFSHMKPNSILGLSH----GFLLGHLQSAGLDFPKNIS-VIA 177 (525)
T ss_dssp HHHHCSEEEECSCHH---------------HHHHHHHHHHHHSCTTCEEEESS----SHHHHHHHHTTCCCCTTSE-EEE
T ss_pred HHhcCCEEEECCChH---------------HHHHHHHHHHHhcCCCCeEEEeC----CCCHHHHhhhcccCCCCCc-EEE
Confidence 899999999998831 23467788999999999976543 432 222210001101223 234
Q ss_pred eCCcccccCcccc-----c----cCCCC-eEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHH-Hh-H
Q 017997 154 SNPEFLAEGTAIQ-----D----LFNPD-RVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLA-AN-A 221 (362)
Q Consensus 154 ~~Pe~~~~g~a~~-----~----~~~~~-~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~-~N-~ 221 (362)
.+|. .||..+. + ....+ -+.+..+. +.+..+.+..++..++. ..+..++...---..++ +. .
T Consensus 178 VmPN--tPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~---tgea~e~alala~aiG~-~~vieTtf~eE~e~DLfgeqtv 251 (525)
T 3fr7_A 178 VCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDV---DGRATDVALGWSVALGS-PFTFATTLEQEYKSDIFGERGI 251 (525)
T ss_dssp EEES--SCHHHHHHHHHHHTTSTTCSCCEEEEEEECS---SSCHHHHHHHHHHHTTC-SEEEECCHHHHHHHHHHHHHTT
T ss_pred EecC--CCchhHHHHHhcccccccCCccEEEEcCCCC---CHHHHHHHHHHHHHCCC-CeeeeeeeeeehhHhhhhhHhh
Confidence 5663 2333211 1 01122 23333222 35678899999999974 33433443321112222 11 2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Q 017997 222 FLAQRISSVNAMSALCEATGANVSQVAFAV 251 (362)
Q Consensus 222 ~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~ 251 (362)
+.....+++.-+.....+.|++++......
T Consensus 252 LsG~~pAlieA~~d~lVe~G~~pe~Ay~~~ 281 (525)
T 3fr7_A 252 LLGAVHGIVEALFRRYTEQGMDEEMAYKNT 281 (525)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 333345677777777788899987755543
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-09 Score=103.00 Aligned_cols=108 Identities=15% Similarity=0.156 Sum_probs=79.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||+++...+...+ ..+....+++++++.||+
T Consensus 192 ktvGIIGlG~IG~~vA~~l~a~--G~~V~~~d~~~~~~~~~~~-------------------~G~~~~~~l~ell~~aDv 250 (393)
T 2nac_A 192 MHVGTVAAGRIGLAVLRRLAPF--DVHLHYTDRHRLPESVEKE-------------------LNLTWHATREDMYPVCDV 250 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHGGG--TCEEEEECSSCCCHHHHHH-------------------HTCEECSSHHHHGGGCSE
T ss_pred CEEEEEeECHHHHHHHHHHHhC--CCEEEEEcCCccchhhHhh-------------------cCceecCCHHHHHhcCCE
Confidence 6899999999999999999887 9999999997544332221 013444577888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~-~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|..... +..+ +...+.++++.++|+.|+..+-..+.+.+.+++.
T Consensus 251 V~l~~Plt~~t--------------~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g 300 (393)
T 2nac_A 251 VTLNCPLHPET--------------EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESG 300 (393)
T ss_dssp EEECSCCCTTT--------------TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred EEEecCCchHH--------------HHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcC
Confidence 99999853221 1112 3456778999999999987666667787777764
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.7e-09 Score=100.46 Aligned_cols=109 Identities=19% Similarity=0.153 Sum_probs=80.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~-V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|+|||+|.||..+|..+... |++ |++||+++...+...+ ......+++++++++||
T Consensus 165 ~tvgIIG~G~IG~~vA~~l~~~--G~~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~l~ell~~aD 223 (364)
T 2j6i_A 165 KTIATIGAGRIGYRVLERLVPF--NPKELLYYDYQALPKDAEEK-------------------VGARRVENIEELVAQAD 223 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHGGG--CCSEEEEECSSCCCHHHHHH-------------------TTEEECSSHHHHHHTCS
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCcEEEEECCCccchhHHHh-------------------cCcEecCCHHHHHhcCC
Confidence 5899999999999999999887 897 9999998654443322 12444567888889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
+|++++|..... ..+. -+...+.++++.++|+.|+.++-..+.+.+.+++.
T Consensus 224 vV~l~~P~t~~t-----------~~li--~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g 274 (364)
T 2j6i_A 224 IVTVNAPLHAGT-----------KGLI--NKELLSKFKKGAWLVNTARGAICVAEDVAAALESG 274 (364)
T ss_dssp EEEECCCCSTTT-----------TTCB--CHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEECCCCChHH-----------HHHh--CHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcC
Confidence 999999853221 1111 13455778999999999987776777888878764
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.9e-09 Score=97.98 Aligned_cols=116 Identities=19% Similarity=0.358 Sum_probs=73.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|.||.++|..|+.+ |+ +|+++|+++++++.......... +- . ...+++. ++. +++++|
T Consensus 1 mkI~VIGaG~vG~~la~~la~~--g~~~eV~L~D~~~~~~~~~~~~l~~~~-~~----~---~~~~i~~-~~~-~a~~~a 68 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLR--GSCSELVLVDRDEDRAQAEAEDIAHAA-PV----S---HGTRVWH-GGH-SELADA 68 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSSHHHHHHHHHHHTTSC-CT----T---SCCEEEE-ECG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCCHHHHHHHHHhhhhhh-hh----c---CCeEEEE-CCH-HHhCCC
Confidence 7999999999999999999998 88 99999999987764322100000 00 0 0123443 455 469999
Q ss_pred cEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 80 DIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
|+||++++.|... |. ++ ..++..++++++.+.++ .++.+|++ .|.|.++.
T Consensus 69 DvVIi~~~~~~~~-g~--~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~-~tNP~~~~ 122 (304)
T 2v6b_A 69 QVVILTAGANQKP-GE--SRLDLLEKNADIFRELVPQITRA-APDAVLLV-TSNPVDLL 122 (304)
T ss_dssp SEEEECC---------------CHHHHHHHHHHHHHHHHHH-CSSSEEEE-CSSSHHHH
T ss_pred CEEEEcCCCCCCC-CC--cHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEE-ecCchHHH
Confidence 9999999876532 10 00 12345567888888888 47777665 46666653
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.8e-09 Score=102.39 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=77.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||+++.. . .+......++++++++||+
T Consensus 157 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~yd~~~~~---------~--------------~~~~~~~~sl~ell~~aDv 211 (416)
T 3k5p_A 157 KTLGIVGYGNIGSQVGNLAESL--GMTVRYYDTSDKL---------Q--------------YGNVKPAASLDELLKTSDV 211 (416)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECTTCCC---------C--------------BTTBEECSSHHHHHHHCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCcchh---------c--------------ccCcEecCCHHHHHhhCCE
Confidence 5899999999999999999887 9999999986311 0 0123445688898999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|..... ..+. -+.....++++.++|+.|..++-..+.+.+.|++.
T Consensus 212 V~lhvPlt~~T-----------~~li--~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g 261 (416)
T 3k5p_A 212 VSLHVPSSKST-----------SKLI--TEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEG 261 (416)
T ss_dssp EEECCCC----------------CCB--CHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTT
T ss_pred EEEeCCCCHHH-----------hhhc--CHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcC
Confidence 99999853221 1111 13455678999999999998777788888878664
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-09 Score=100.06 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=76.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||++++ +. + .....+++++++.||+
T Consensus 125 ~~vgIIG~G~IG~~~A~~l~~~--G~~V~~~dr~~~--~~---~--------------------~~~~~~l~ell~~aDv 177 (303)
T 1qp8_A 125 EKVAVLGLGEIGTRVGKILAAL--GAQVRGFSRTPK--EG---P--------------------WRFTNSLEEALREARA 177 (303)
T ss_dssp CEEEEESCSTHHHHHHHHHHHT--TCEEEEECSSCC--CS---S--------------------SCCBSCSHHHHTTCSE
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEECCCcc--cc---C--------------------cccCCCHHHHHhhCCE
Confidence 6899999999999999999988 999999999754 10 1 0112456778899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++|+|..... ..+. -+...+.++++.++|+.|+.++-..+.+.+.+++.
T Consensus 178 V~l~~P~~~~t-----------~~~i--~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g 227 (303)
T 1qp8_A 178 AVCALPLNKHT-----------RGLV--KYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKER 227 (303)
T ss_dssp EEECCCCSTTT-----------TTCB--CHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred EEEeCcCchHH-----------HHHh--CHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhC
Confidence 99999854221 1111 13566788999999999997776677787777764
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=7.8e-10 Score=103.20 Aligned_cols=136 Identities=13% Similarity=0.131 Sum_probs=89.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||.++|..+... |++|++||++++..+.+ .......++++++++||+
T Consensus 141 ~tvGIIGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~---------------------~~~~~~~~l~ell~~aDv 197 (324)
T 3hg7_A 141 RTLLILGTGSIGQHIAHTGKHF--GMKVLGVSRSGRERAGF---------------------DQVYQLPALNKMLAQADV 197 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCCCTTC---------------------SEEECGGGHHHHHHTCSE
T ss_pred ceEEEEEECHHHHHHHHHHHhC--CCEEEEEcCChHHhhhh---------------------hcccccCCHHHHHhhCCE
Confidence 5899999999999999999988 99999999975221100 112223578888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC-CCceEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLA 160 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~-g~~~~v~~~Pe~~~ 160 (362)
|++++|......+ -.+ +.....++++.++|+.|+.++-..+.+.+.|++... |.... ++.+|-..
T Consensus 198 V~l~lPlt~~T~~-----li~--------~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lD-V~~~EPl~ 263 (324)
T 3hg7_A 198 IVSVLPATRETHH-----LFT--------ASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLD-VFEQEPLP 263 (324)
T ss_dssp EEECCCCCSSSTT-----SBC--------TTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEES-CCSSSSCC
T ss_pred EEEeCCCCHHHHH-----HhH--------HHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEec-cCCCCCCC
Confidence 9999985322111 111 234566899999999999887778888888876432 21111 24555443
Q ss_pred cCccccccCCCCeEEEe
Q 017997 161 EGTAIQDLFNPDRVLIG 177 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG 177 (362)
+.+ .++..+.+++.
T Consensus 264 ~~~---pL~~~~nvilT 277 (324)
T 3hg7_A 264 ADS---PLWGQPNLIIT 277 (324)
T ss_dssp TTC---TTTTCTTEEEC
T ss_pred CCC---hhhcCCCEEEe
Confidence 333 23444455543
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.2e-09 Score=98.76 Aligned_cols=108 Identities=9% Similarity=0.096 Sum_probs=79.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||+++...+...+ ..... .+++++++.||+
T Consensus 146 ~tvGIIG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~-------------------~g~~~-~~l~ell~~aDv 203 (330)
T 4e5n_A 146 ATVGFLGMGAIGLAMADRLQGW--GATLQYHEAKALDTQTEQR-------------------LGLRQ-VACSELFASSDF 203 (330)
T ss_dssp CEEEEECCSHHHHHHHHHTTTS--CCEEEEECSSCCCHHHHHH-------------------HTEEE-CCHHHHHHHCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCCCCcHhHHHh-------------------cCcee-CCHHHHHhhCCE
Confidence 5899999999999999999877 9999999998633332221 01333 368888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|...... .+ .-+...+.++++.++|+.|..++-..+.+.+.|++.
T Consensus 204 V~l~~P~t~~t~-----------~l--i~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g 253 (330)
T 4e5n_A 204 ILLALPLNADTL-----------HL--VNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253 (330)
T ss_dssp EEECCCCSTTTT-----------TC--BCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEcCCCCHHHH-----------HH--hCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhC
Confidence 999998532211 11 113566788999999999987777777888777764
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1e-08 Score=94.55 Aligned_cols=117 Identities=19% Similarity=0.252 Sum_probs=78.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~ 78 (362)
|||+|||+|.||.++|..|+.+ |+ +|++||+++++++..... +.+..... ...+++.++| .+++++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~--~~~~~v~L~D~~~~~~~g~~~d--------l~~~~~~~~~~~~i~~t~d-~~a~~~ 69 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLN--LDVDEIALVDIAEDLAVGEAMD--------LAHAAAGIDKYPKIVGGAD-YSLLKG 69 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHH--------HHHHHHTTTCCCEEEEESC-GGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEECChHHHHHHHHH--------HHhhhhhcCCCCEEEEeCC-HHHhCC
Confidence 8999999999999999999998 77 999999999887632110 00000000 1235777788 567999
Q ss_pred CcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 79 ADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
||+||++.+.|... |. ++ ..+.+.+++..+.+.++ .++.++++-| .|..+.
T Consensus 70 aDiVViaag~~~kp-G~--~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvs-NPvd~~ 124 (294)
T 1oju_A 70 SEIIVVTAGLARKP-GM--TRLDLAHKNAGIIKDIAKKIVEN-APESKILVVT-NPMDVM 124 (294)
T ss_dssp CSEEEECCCCCCCS-SC--CHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECS-SSHHHH
T ss_pred CCEEEECCCCCCCC-CC--cHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeC-CcchHH
Confidence 99999999887543 21 10 11234456666777777 4666666544 566654
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.7e-09 Score=100.37 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=78.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|||||+|.||..+|..+... |++|++||+++.. . .+.....++++++++.||+
T Consensus 146 ktlGiIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~-----~------------------~~~~~~~~~l~ell~~aDv 200 (404)
T 1sc6_A 146 KKLGIIGYGHIGTQLGILAESL--GMYVYFYDIENKL-----P------------------LGNATQVQHLSDLLNMSDV 200 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCC-----C------------------CTTCEECSCHHHHHHHCSE
T ss_pred CEEEEEeECHHHHHHHHHHHHC--CCEEEEEcCCchh-----c------------------cCCceecCCHHHHHhcCCE
Confidence 5899999999999999999887 9999999986421 0 0123455678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|..... ..+.. +...+.++++.++|+.|+..+-..+.+.+.+++.
T Consensus 201 V~l~~P~t~~t-----------~~li~--~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g 250 (404)
T 1sc6_A 201 VSLHVPENPST-----------KNMMG--AKEISLMKPGSLLINASRGTVVDIPALADALASK 250 (404)
T ss_dssp EEECCCSSTTT-----------TTCBC--HHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTT
T ss_pred EEEccCCChHH-----------HHHhh--HHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcC
Confidence 99999854221 11111 3445678999999999998777777888877763
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.92 E-value=6e-10 Score=103.72 Aligned_cols=107 Identities=8% Similarity=0.062 Sum_probs=78.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||++++..+.+ . ......++++++++||+
T Consensus 140 ~tvGIiG~G~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~------------~---------~~~~~~~l~ell~~aDi 196 (315)
T 3pp8_A 140 FSVGIMGAGVLGAKVAESLQAW--GFPLRCWSRSRKSWPGV------------E---------SYVGREELRAFLNQTRV 196 (315)
T ss_dssp CCEEEECCSHHHHHHHHHHHTT--TCCEEEEESSCCCCTTC------------E---------EEESHHHHHHHHHTCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEEcCCchhhhhh------------h---------hhcccCCHHHHHhhCCE
Confidence 6899999999999999999887 99999999975422110 0 01112467788999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|..... ..+. -+...+.++++.++|+.|.-++-..+.+.+.|++.
T Consensus 197 V~l~~Plt~~t-----------~~li--~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g 246 (315)
T 3pp8_A 197 LINLLPNTAQT-----------VGII--NSELLDQLPDGAYVLNLARGVHVQEADLLAALDSG 246 (315)
T ss_dssp EEECCCCCGGG-----------TTCB--SHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEecCCchhh-----------hhhc--cHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhC
Confidence 99999843221 1111 13456778999999999988777778888878664
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=6.7e-09 Score=97.65 Aligned_cols=105 Identities=17% Similarity=0.241 Sum_probs=78.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||++++. ... ....+. ++++++++||+
T Consensus 149 ktvgIiGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~--~~~--------------------~~~~~~-~l~ell~~aDv 203 (343)
T 2yq5_A 149 LTVGLIGVGHIGSAVAEIFSAM--GAKVIAYDVAYNP--EFE--------------------PFLTYT-DFDTVLKEADI 203 (343)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCG--GGT--------------------TTCEEC-CHHHHHHHCSE
T ss_pred CeEEEEecCHHHHHHHHHHhhC--CCEEEEECCChhh--hhh--------------------cccccc-CHHHHHhcCCE
Confidence 5899999999999999999987 9999999998643 111 112333 78888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|......+ -.+ +...+.++++.++|+.|..++-..+.+.+.|++.
T Consensus 204 V~l~~Plt~~t~~-----li~--------~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g 253 (343)
T 2yq5_A 204 VSLHTPLFPSTEN-----MIG--------EKQLKEMKKSAYLINCARGELVDTGALIKALQDG 253 (343)
T ss_dssp EEECCCCCTTTTT-----CBC--------HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEcCCCCHHHHH-----Hhh--------HHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcC
Confidence 9999985322111 111 3445678999999999998777788888888764
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-08 Score=94.52 Aligned_cols=121 Identities=19% Similarity=0.256 Sum_probs=79.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|++|.++|..|+..+...+|.++|+++++++..... +.+.. ......++++.+..+++++||+
T Consensus 7 ~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~d--------l~~~~-~~~~~~~~v~~~~~~a~~~aDv 77 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMD--------LKHAT-PYSPTTVRVKAGEYSDCHDADL 77 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHH--------HHHHG-GGSSSCCEEEECCGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhh--------HHhhh-hhcCCCeEEEeCCHHHhCCCCE
Confidence 59999999999999999999882125999999999877642110 11110 0111223333344567999999
Q ss_pred EEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHH
Q 017997 82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~ 136 (362)
||++++.|... |. ++ ..+...+++..+.+.++ .++.+|++ .|.|+++.-.
T Consensus 78 Vvi~ag~~~~~-g~--~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv-~tNPv~~~t~ 131 (317)
T 3d0o_A 78 VVICAGAAQKP-GE--TRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLV-ATNPVDILAY 131 (317)
T ss_dssp EEECCCCCCCT-TC--CHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEE-CSSSHHHHHH
T ss_pred EEECCCCCCCC-CC--cHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEE-ecCcHHHHHH
Confidence 99999988643 10 10 12335667777888887 46777766 6788887544
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.7e-08 Score=94.31 Aligned_cols=118 Identities=21% Similarity=0.324 Sum_probs=78.9
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~ 78 (362)
+|||+|||+|.||.++|..|+.. |+ +|+++|+++++++.... .+.+..... ...++.+++|+ +++++
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~--~~~~v~L~Di~~~~~~g~~~--------dl~~~~~~~~~~~~v~~t~d~-~a~~~ 75 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLK--ELGDVVLFDIAEGTPQGKGL--------DIAESSPVDGFDAKFTGANDY-AAIEG 75 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSSHHHHHHH--------HHHHHHHHHTCCCCEEEESSG-GGGTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCchhHHHHHH--------HHhchhhhcCCCCEEEEeCCH-HHHCC
Confidence 36999999999999999999998 78 99999999988763321 011110000 13457778888 56999
Q ss_pred CcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 79 ADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
||+||++.+.|... |. ++ ..+...+++..+.+.++. ++.++++-| .|..+.
T Consensus 76 aDiVIiaag~p~k~-G~--~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvt-NPvd~~ 130 (324)
T 3gvi_A 76 ADVVIVTAGVPRKP-GM--SRDDLLGINLKVMEQVGAGIKKYA-PEAFVICIT-NPLDAM 130 (324)
T ss_dssp CSEEEECCSCCCC--------CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECC-SSHHHH
T ss_pred CCEEEEccCcCCCC-CC--CHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecC-CCcHHH
Confidence 99999999887643 21 11 113355667777777776 566665533 565543
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.5e-09 Score=97.67 Aligned_cols=106 Identities=16% Similarity=0.195 Sum_probs=78.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||+++++. +.+. ..+.++++++++.||+
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~--~~~~--------------------~~~~~~l~ell~~aDv 202 (333)
T 1j4a_A 147 QVVGVVGTGHIGQVFMQIMEGF--GAKVITYDIFRNPE--LEKK--------------------GYYVDSLDDLYKQADV 202 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCHH--HHHT--------------------TCBCSCHHHHHHHCSE
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEECCCcchh--HHhh--------------------CeecCCHHHHHhhCCE
Confidence 5899999999999999999987 99999999987553 2211 1123467777899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|..... ..+. -+...+.++++.++|+.|+.++-..+.+.+.+++.
T Consensus 203 V~l~~p~~~~t-----------~~li--~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g 252 (333)
T 1j4a_A 203 ISLHVPDVPAN-----------VHMI--NDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG 252 (333)
T ss_dssp EEECSCCCGGG-----------TTCB--SHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEcCCCcHHH-----------HHHH--hHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 99999853221 1111 02345668999999999987777777888888764
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-08 Score=81.55 Aligned_cols=127 Identities=14% Similarity=0.240 Sum_probs=78.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-CCCCCCCChHHHHhhhcCCCEEEecCH---H-hhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-QLPIYEPGLDGVVKQCRGKNLFFSTDV---E-KHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~t~d~---~-~a~ 76 (362)
|+|.|+|+|.+|..+|..|.+. |++|+++|+++++++.+.+. ........ .++. . ..+
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~~~~~~~~~d---------------~~~~~~l~~~~~ 67 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASAEIDALVINGD---------------CTKIKTLEDAGI 67 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCSSEEEESC---------------TTSHHHHHHTTT
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHhcCcEEEEcC---------------CCCHHHHHHcCc
Confidence 7999999999999999999998 99999999999999887642 11110000 0111 1 125
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCC
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP 156 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (362)
.++|+||+|+|.+. ....+..+.+.++++.+|+. + ..+...+ .+++. |. ..+.+|
T Consensus 68 ~~~d~vi~~~~~~~---------------~~~~~~~~~~~~~~~~ii~~-~-~~~~~~~----~l~~~--g~--~~v~~p 122 (140)
T 1lss_A 68 EDADMYIAVTGKEE---------------VNLMSSLLAKSYGINKTIAR-I-SEIEYKD----VFERL--GV--DVVVSP 122 (140)
T ss_dssp TTCSEEEECCSCHH---------------HHHHHHHHHHHTTCCCEEEE-C-SSTTHHH----HHHHT--TC--SEEECH
T ss_pred ccCCEEEEeeCCch---------------HHHHHHHHHHHcCCCEEEEE-e-cCHhHHH----HHHHc--CC--CEEECH
Confidence 78999999976421 12233445555676776653 2 2333333 23332 32 345788
Q ss_pred cccccCccccccCC
Q 017997 157 EFLAEGTAIQDLFN 170 (362)
Q Consensus 157 e~~~~g~a~~~~~~ 170 (362)
++...+.....+.+
T Consensus 123 ~~~~~~~~~~~~~~ 136 (140)
T 1lss_A 123 ELIAANYIEKLIER 136 (140)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcc
Confidence 77665554444333
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-08 Score=93.52 Aligned_cols=111 Identities=22% Similarity=0.300 Sum_probs=76.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHH----HHcCCCCCCCCChHHHHhhhcCCCEE-EecCHHh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINA----WNSDQLPIYEPGLDGVVKQCRGKNLF-FSTDVEK 74 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~----l~~~~~~~~e~~l~~~~~~~~~~~l~-~t~d~~~ 74 (362)
|||+|||+|+||.++|..|+.. |+ +|+++|+++++++. |+.+ .++.. ..++ .++++ +
T Consensus 6 ~kI~ViGaG~vG~~~a~~l~~~--~~~~~l~l~D~~~~k~~g~a~DL~~~-~~~~~------------~~v~i~~~~~-~ 69 (326)
T 3pqe_A 6 NKVALIGAGFVGSSYAFALINQ--GITDELVVIDVNKEKAMGDVMDLNHG-KAFAP------------QPVKTSYGTY-E 69 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSCHHHHHHHHHHHHHT-GGGSS------------SCCEEEEECG-G
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHHHHHhc-ccccc------------CCeEEEeCcH-H
Confidence 6999999999999999999998 66 99999999998876 5554 33321 1222 34455 4
Q ss_pred hhcCCcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 75 HVSEADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~~g~~~~~~~-----d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
++++||+||++.++|... |. + .. +...+++..+.+.++. ++.++++- |.|..+.
T Consensus 70 a~~~aDvVvi~ag~p~kp-G~--~-R~dL~~~N~~Iv~~i~~~I~~~~-p~a~vlvv-tNPvd~~ 128 (326)
T 3pqe_A 70 DCKDADIVCICAGANQKP-GE--T-RLELVEKNLKIFKGIVSEVMASG-FDGIFLVA-TNPVDIL 128 (326)
T ss_dssp GGTTCSEEEECCSCCCCT-TC--C-HHHHHHHHHHHHHHHHHHHHHTT-CCSEEEEC-SSSHHHH
T ss_pred HhCCCCEEEEecccCCCC-Cc--c-HHHHHHHHHHHHHHHHHHHHHhc-CCeEEEEc-CChHHHH
Confidence 699999999999987644 10 1 12 2244566667777765 45665543 4566553
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.84 E-value=7.9e-09 Score=96.13 Aligned_cols=100 Identities=16% Similarity=0.145 Sum_probs=74.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||+++++.+ .. ..+++++++.+|+
T Consensus 145 ~~vgIIG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~~-------------------------~~-~~~l~ell~~aDv 196 (311)
T 2cuk_A 145 LTLGLVGMGRIGQAVAKRALAF--GMRVVYHARTPKPLP-------------------------YP-FLSLEELLKEADV 196 (311)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSSS-------------------------SC-BCCHHHHHHHCSE
T ss_pred CEEEEEEECHHHHHHHHHHHHC--CCEEEEECCCCcccc-------------------------cc-cCCHHHHHhhCCE
Confidence 5899999999999999999988 999999999754321 01 2456777899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHH
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILT 142 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~ 142 (362)
|++++|..... ..+.. +...+.++++.++|+.|+..+-..+.+.+.++
T Consensus 197 V~l~~p~~~~t-----------~~li~--~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 197 VSLHTPLTPET-----------HRLLN--RERLFAMKRGAILLNTARGALVDTEALVEALR 244 (311)
T ss_dssp EEECCCCCTTT-----------TTCBC--HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred EEEeCCCChHH-----------HhhcC--HHHHhhCCCCcEEEECCCCCccCHHHHHHHHh
Confidence 99999854221 11111 23456789999999999876666677877776
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=4e-08 Score=91.67 Aligned_cols=120 Identities=15% Similarity=0.153 Sum_probs=80.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
+|||+|||+|.||.++|..|+.+ |+ +|+++|+++++++..... +.+........++..++|+++ +++
T Consensus 21 ~~kV~ViGaG~vG~~~a~~la~~--g~~~ev~L~Di~~~~~~g~a~D--------L~~~~~~~~~~~i~~t~d~~~-~~d 89 (330)
T 3ldh_A 21 YNKITVVGCDAVGMADAISVLMK--DLADEVALVDVMEDKLKGEMMD--------LEHGSLFLHTAKIVSGKDYSV-SAG 89 (330)
T ss_dssp CCEEEEESTTHHHHHHHHHHHHH--CCCSEEEEECSCHHHHHHHHHH--------HHHHGGGSCCSEEEEESSSCS-CSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEECCHHHHHHHHHH--------hhhhhhcccCCeEEEcCCHHH-hCC
Confidence 37999999999999999999998 66 999999999887753210 011000001245777889876 999
Q ss_pred CcEEEEeccCCCCCCCCCCC--CCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 79 ADIVFVSVNTPTKTQGLGAG--KAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~--~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
||+||++.+.|..+ |+... -..+.+.+++..+.+.++ .++.++++-| .|..+.
T Consensus 90 aDiVIitaG~p~kp-G~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvt-NPvdi~ 144 (330)
T 3ldh_A 90 SKLVVITAGARQQE-GESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHP-ELGTDK 144 (330)
T ss_dssp CSEEEECCSCCCCS-SCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECS-SSHHHH
T ss_pred CCEEEEeCCCCCCC-CCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCC-CccHHH
Confidence 99999999988643 21100 012234566777888888 5666665533 565554
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.77 E-value=6.4e-08 Score=90.27 Aligned_cols=118 Identities=21% Similarity=0.316 Sum_probs=79.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|.||.++|..|+.. |+ +|+++|+++++++..... +.+.... ....+++.++|++ ++++|
T Consensus 6 ~kI~iiGaG~vG~~~a~~l~~~--~~~~v~l~Di~~~~~~g~a~d--------L~~~~~~~~~~~~v~~t~d~~-a~~~a 74 (321)
T 3p7m_A 6 KKITLVGAGNIGGTLAHLALIK--QLGDVVLFDIAQGMPNGKALD--------LLQTCPIEGVDFKVRGTNDYK-DLENS 74 (321)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSSHHHHHHHH--------HHTTHHHHTCCCCEEEESCGG-GGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCceEEEEeCChHHHHHHHHH--------HHhhhhhcCCCcEEEEcCCHH-HHCCC
Confidence 7999999999999999999998 66 999999999887633210 1110000 0123566677864 69999
Q ss_pred cEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH
Q 017997 80 DIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~ 135 (362)
|+||++.+.|... |. ++ ..+...+++..+.+.++. ++.++++- |.|.++.-
T Consensus 75 DvVIi~ag~p~k~-G~--~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivv-tNPvd~~t 129 (321)
T 3p7m_A 75 DVVIVTAGVPRKP-GM--SRDDLLGINIKVMQTVGEGIKHNC-PNAFVICI-TNPLDIMV 129 (321)
T ss_dssp SEEEECCSCCCCT-TC--CHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC-CSSHHHHH
T ss_pred CEEEEcCCcCCCC-CC--CHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEe-cCchHHHH
Confidence 9999999887543 21 11 113455677777888876 56666554 56766543
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.76 E-value=8.9e-08 Score=89.06 Aligned_cols=117 Identities=26% Similarity=0.383 Sum_probs=77.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCC--HHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS--VSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~--~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~ 77 (362)
+||+|||+|.||.++|..|+.. |+ +|+++|++ +++.+..... +.+..... ...+++.+++++ +++
T Consensus 9 ~kv~ViGaG~vG~~ia~~l~~~--g~~~v~l~D~~~~~~~~~g~a~d--------l~~~~~~~~~~~~i~~t~d~~-a~~ 77 (315)
T 3tl2_A 9 KKVSVIGAGFTGATTAFLLAQK--ELADVVLVDIPQLENPTKGKALD--------MLEASPVQGFDANIIGTSDYA-DTA 77 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCEEEEECCGGGHHHHHHHHHH--------HHHHHHHHTCCCCEEEESCGG-GGT
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeccchHHHHHHhhhh--------HHHhhhhccCCCEEEEcCCHH-HhC
Confidence 4899999999999999999998 88 99999999 6666544311 11111000 234678788875 599
Q ss_pred CCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 78 EADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
+||+||++.++|..+ |. ++ ..+...+++..+.+.++. ++.++++-| .|..+.
T Consensus 78 ~aDvVIiaag~p~kp-g~--~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vlvvs-NPvd~~ 133 (315)
T 3tl2_A 78 DSDVVVITAGIARKP-GM--SRDDLVATNSKIMKSITRDIAKHS-PNAIIVVLT-NPVDAM 133 (315)
T ss_dssp TCSEEEECCSCCCCT-TC--CHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECC-SSHHHH
T ss_pred CCCEEEEeCCCCCCC-CC--CHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEECC-ChHHHH
Confidence 999999999988644 21 11 112234566667777775 556665533 455543
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=6.4e-08 Score=90.15 Aligned_cols=112 Identities=18% Similarity=0.256 Sum_probs=79.6
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHH--HHHcCCCCCCCCChHHHHhhhcCCCEEE---ecCHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPS--IEVAVVDISVSRIN--AWNSDQLPIYEPGLDGVVKQCRGKNLFF---STDVE 73 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G--~~V~~~d~~~~~~~--~l~~~~~~~~e~~l~~~~~~~~~~~l~~---t~d~~ 73 (362)
|||+|||+ |++|.+++..|+.. | ++|+++|+++..-. .|.... ...+++. ++|++
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~--~~~~ev~L~Di~~~~~~a~dL~~~~---------------~~~~l~~~~~t~d~~ 63 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNS--PLVSRLTLYDIAHTPGVAADLSHIE---------------TRATVKGYLGPEQLP 63 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC--TTCSEEEEEESSSHHHHHHHHTTSS---------------SSCEEEEEESGGGHH
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCCcEEEEEeCCccHHHHHHHhccC---------------cCceEEEecCCCCHH
Confidence 79999998 99999999999987 6 79999999872221 222211 0123565 36788
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhcCCCCEEEEeeCCccccHHH
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~~~d~-----~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~ 136 (362)
+++++||+||++.+.|... | ....|+ ..++++.+.+.++. ++.++++ .|.|.++.-.
T Consensus 64 ~a~~~aDvVvi~ag~~~~~-g---~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv-~sNPv~~~~~ 125 (314)
T 1mld_A 64 DCLKGCDVVVIPAGVPRKP-G---MTRDDLFNTNATIVATLTAACAQHC-PDAMICI-ISNPVNSTIP 125 (314)
T ss_dssp HHHTTCSEEEECCSCCCCT-T---CCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEE-CSSCHHHHHH
T ss_pred HHhCCCCEEEECCCcCCCC-C---CcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE-ECCCcchhHH
Confidence 8899999999999887643 1 112455 66778888888876 5556555 4778887653
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=1e-08 Score=95.57 Aligned_cols=106 Identities=11% Similarity=0.137 Sum_probs=76.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..++..|++..+..+|.+||+++++.+++.+.. ...+..+++++++++++|+
T Consensus 136 ~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~----------------~~~~~~~~~~~e~v~~aDi 199 (312)
T 2i99_A 136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTV----------------QGEVRVCSSVQEAVAGADV 199 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHS----------------SSCCEECSSHHHHHTTCSE
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHh----------------hCCeEEeCCHHHHHhcCCE
Confidence 689999999999999999987531349999999999998876521 0025567788888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHh
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~ 143 (362)
|++|+|.. .. ++.. +.++++++|+..|+..|.. +++.+.+.+
T Consensus 200 Vi~atp~~-~~----------------v~~~--~~l~~g~~vi~~g~~~p~~-~el~~~~~~ 241 (312)
T 2i99_A 200 IITVTLAT-EP----------------ILFG--EWVKPGAHINAVGASRPDW-RELDDELMK 241 (312)
T ss_dssp EEECCCCS-SC----------------CBCG--GGSCTTCEEEECCCCSTTC-CSBCHHHHH
T ss_pred EEEEeCCC-Cc----------------ccCH--HHcCCCcEEEeCCCCCCCc-eeccHHHHh
Confidence 99998742 11 1111 4678899999888887776 334333333
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.2e-08 Score=89.88 Aligned_cols=116 Identities=19% Similarity=0.255 Sum_probs=76.1
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH----HHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINA----WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~----l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
|||+|||+ |++|.++|..++..+...+|+++|+++++++. |+... + ...++++++|+.+++
T Consensus 9 ~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~--~------------~~~~i~~t~d~~~al 74 (343)
T 3fi9_A 9 EKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCG--F------------EGLNLTFTSDIKEAL 74 (343)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHC--C------------TTCCCEEESCHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCc--C------------CCCceEEcCCHHHHh
Confidence 69999998 99999999999988222589999999988775 43321 1 013577888988889
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHH
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d-----~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~ 136 (362)
++||+||++..+|... |. + ..| ...+++..+.+.++.++..+|++ -|.|..+.-.
T Consensus 75 ~dADvVvitaG~p~kp-G~--~-R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlv-vsNPvd~~t~ 134 (343)
T 3fi9_A 75 TDAKYIVSSGGAPRKE-GM--T-REDLLKGNAEIAAQLGKDIKSYCPDCKHVII-IFNPADITGL 134 (343)
T ss_dssp TTEEEEEECCC----------C-HHHHHHHHHHHHHHHHHHHHHHCTTCCEEEE-CSSSHHHHHH
T ss_pred CCCCEEEEccCCCCCC-CC--C-HHHHHHHHHHHHHHHHHHHHHhccCcEEEEE-ecCchHHHHH
Confidence 9999999999887543 10 1 222 24455666777777644432433 2567665443
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.73 E-value=6.6e-08 Score=90.51 Aligned_cols=111 Identities=20% Similarity=0.280 Sum_probs=76.6
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCC--CeEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHhhhcCCCEEE---ecCH
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPS--IEVAVVDISVSR--INAWNSDQLPIYEPGLDGVVKQCRGKNLFF---STDV 72 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G--~~V~~~d~~~~~--~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~---t~d~ 72 (362)
+|||+|+| +|++|.+++..|+.. | ++|+++|++++. ...+..... ...+.. ++|+
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~--g~~~ev~l~Di~~~~~~~~dL~~~~~---------------~~~v~~~~~t~d~ 70 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMN--PLVSVLHLYDVVNAPGVTADISHMDT---------------GAVVRGFLGQQQL 70 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHC--TTEEEEEEEESSSHHHHHHHHHTSCS---------------SCEEEEEESHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhC--CCCCEEEEEeCCCcHhHHHHhhcccc---------------cceEEEEeCCCCH
Confidence 37999999 899999999999988 7 899999998762 222332110 113444 5577
Q ss_pred HhhhcCCcEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 73 ~~a~~~aDvVii~vptp~~~~g~~~~~~~d~-----~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
.++++++|+||++.+.|... + ....|+ ..+++.++.+.++. ++.+|++ +|.|.+++
T Consensus 71 ~~al~gaDvVi~~ag~~~~~-g---~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv-~SNPv~~~ 131 (326)
T 1smk_A 71 EAALTGMDLIIVPAGVPRKP-G---MTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNL-ISNPVNST 131 (326)
T ss_dssp HHHHTTCSEEEECCCCCCCS-S---CCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEE-CCSSHHHH
T ss_pred HHHcCCCCEEEEcCCcCCCC-C---CCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE-ECCchHHH
Confidence 78899999999999877543 1 112333 45566666776665 5566655 68898874
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.71 E-value=9.9e-08 Score=93.38 Aligned_cols=124 Identities=20% Similarity=0.237 Sum_probs=79.1
Q ss_pred ceEEEEcCChhH--HHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVG--GPTMAVIALK--CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G--~~lA~~la~~--~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~ 76 (362)
|||+|||+|.|| .++|..|+.. .+|++|++||+++++++.++.. ...++.. ....++++++|+.+++
T Consensus 4 ~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~--------~~~~l~~~~~~~~I~~ttD~~eal 75 (480)
T 1obb_A 4 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTI--------AKKYVEEVGADLKFEKTMNLDDVI 75 (480)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHH--------HHHHHHHTTCCCEEEEESCHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHH--------HHHHhccCCCCcEEEEECCHHHHh
Confidence 699999999975 5556677642 1278999999999998876542 1122211 1235688899997789
Q ss_pred cCCcEEEEeccCCCC-----------CCCC----CCCCCC------------ChHHHHHHHHHHHhhcCCCCEEEEeeCC
Q 017997 77 SEADIVFVSVNTPTK-----------TQGL----GAGKAA------------DLTYWESAARVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 77 ~~aDvVii~vptp~~-----------~~g~----~~~~~~------------d~~~l~~~~~~i~~~l~~~~iVv~~STv 129 (362)
++||+||+++|.+.. ..|. +++-.+ .+..+.++++.|.++. |+.++++ .|.
T Consensus 76 ~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~-P~A~ii~-~TN 153 (480)
T 1obb_A 76 IDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLS-PKAWYLQ-AAN 153 (480)
T ss_dssp TTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHC-TTCEEEE-CSS
T ss_pred CCCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHC-CCeEEEE-eCC
Confidence 999999999975210 0000 000001 1246677778888776 5566543 567
Q ss_pred ccccHH
Q 017997 130 PVKTAE 135 (362)
Q Consensus 130 ~~gt~~ 135 (362)
|.+...
T Consensus 154 Pvdi~t 159 (480)
T 1obb_A 154 PIFEGT 159 (480)
T ss_dssp CHHHHH
T ss_pred cHHHHH
Confidence 776543
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-08 Score=94.57 Aligned_cols=105 Identities=13% Similarity=0.139 Sum_probs=77.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||++++.. + +. . ..+ .+++++++.||+
T Consensus 146 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~--~-~~------------------~-~~~-~~l~ell~~aDv 200 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVAIKLFKGF--GAKVIAYDPYPMKG--D-HP------------------D-FDY-VSLEDLFKQSDV 200 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSS--C-CT------------------T-CEE-CCHHHHHHHCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCcchh--h-Hh------------------c-ccc-CCHHHHHhcCCE
Confidence 5899999999999999999987 99999999975321 0 00 1 222 367788899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++|+|..... ..+. -+...+.++++.++|+.|+.++-..+.+.+.+++.
T Consensus 201 V~~~~P~~~~t-----------~~li--~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g 250 (333)
T 1dxy_A 201 IDLHVPGIEQN-----------THII--NEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSG 250 (333)
T ss_dssp EEECCCCCGGG-----------TTSB--CHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTT
T ss_pred EEEcCCCchhH-----------HHHh--CHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 99999854321 1111 13455678999999999998777778888878764
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.8e-08 Score=94.29 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=77.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|||||+|.||..+|..+... |++|++||++.+..+ . + . ...++++++++||+
T Consensus 120 ktvGIIGlG~IG~~vA~~l~a~--G~~V~~~d~~~~~~~---~-------------------~-~-~~~sl~ell~~aDi 173 (381)
T 3oet_A 120 RTIGIVGVGNVGSRLQTRLEAL--GIRTLLCDPPRAARG---D-------------------E-G-DFRTLDELVQEADV 173 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECHHHHHTT---C-------------------C-S-CBCCHHHHHHHCSE
T ss_pred CEEEEEeECHHHHHHHHHHHHC--CCEEEEECCChHHhc---c-------------------C-c-ccCCHHHHHhhCCE
Confidence 5899999999999999999988 999999998543211 0 0 1 12467888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|.... | ...+..+. -+.....++++.++|+.|.-++-..+.+.+.+++.
T Consensus 174 V~l~~Plt~~--g-----~~~T~~li--~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g 227 (381)
T 3oet_A 174 LTFHTPLYKD--G-----PYKTLHLA--DETLIRRLKPGAILINACRGPVVDNAALLARLNAG 227 (381)
T ss_dssp EEECCCCCCS--S-----TTCCTTSB--CHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred EEEcCcCCcc--c-----cccchhhc--CHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 9999985432 0 00011111 13455668999999999998877788888878764
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-08 Score=93.78 Aligned_cols=105 Identities=12% Similarity=0.129 Sum_probs=77.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||++++.. +.+ . ..+ .++++++++||+
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~--~~~-------------------~-~~~-~~l~ell~~aDv 201 (331)
T 1xdw_A 147 CTVGVVGLGRIGRVAAQIFHGM--GATVIGEDVFEIKG--IED-------------------Y-CTQ-VSLDEVLEKSDI 201 (331)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCCS--CTT-------------------T-CEE-CCHHHHHHHCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCccHH--HHh-------------------c-ccc-CCHHHHHhhCCE
Confidence 5899999999999999999987 99999999975321 100 1 222 367788899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|......+ -.+ +...+.++++.++|+.|+.++-..+.+.+.+++.
T Consensus 202 V~~~~p~t~~t~~-----li~--------~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g 251 (331)
T 1xdw_A 202 ITIHAPYIKENGA-----VVT--------RDFLKKMKDGAILVNCARGQLVDTEAVIEAVESG 251 (331)
T ss_dssp EEECCCCCTTTCC-----SBC--------HHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEecCCchHHHH-----HhC--------HHHHhhCCCCcEEEECCCcccccHHHHHHHHHhC
Confidence 9999885322111 111 3455678999999999987777778888878764
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-07 Score=86.83 Aligned_cols=117 Identities=23% Similarity=0.299 Sum_probs=74.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|++|.+++..|+.. ++ ++.++|+++++++..... +.+... .....+++.+..+++++|
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~--~~~~el~L~Di~~~~~~g~~~d--------l~~~~~--~~~~~~v~~~~~~a~~~a 73 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQ--GIAEEFVIVDVVKDRTKGDALD--------LEDAQA--FTAPKKIYSGEYSDCKDA 73 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSHHHHHHHHHH--------HHGGGG--GSCCCEEEECCGGGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHcC--CCCCEEEEEeCCchHHHHHHHH--------HHHHHH--hcCCeEEEECCHHHhCCC
Confidence 6999999999999999999988 55 899999999888743221 000000 012334444445669999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhcCCCCEEEEeeCCccccHHH
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~-----~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~ 136 (362)
|+||++.+.|... |. + ..|+ ..+++..+.+.++. ++.+|++- |.|.++.-.
T Consensus 74 DvVii~ag~~~~~-g~--~-R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~-tNPv~~~t~ 129 (318)
T 1ez4_A 74 DLVVITAGAPQKP-GE--S-RLDLVNKNLNILSSIVKPVVDSG-FDGIFLVA-ANPVDILTY 129 (318)
T ss_dssp SEEEECCCC--------------CHHHHHHHHHHHHHHHHHTT-CCSEEEEC-SSSHHHHHH
T ss_pred CEEEECCCCCCCC-CC--C-HHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEe-CCcHHHHHH
Confidence 9999999877543 21 1 2233 55677777777774 66666653 778776543
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.9e-08 Score=93.55 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=78.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..|... |++|++||++++.. ..+ .. ..++++++++||+
T Consensus 117 ~tvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~---~~g--------------------~~-~~~l~ell~~aDv 170 (380)
T 2o4c_A 117 RTYGVVGAGQVGGRLVEVLRGL--GWKVLVCDPPRQAR---EPD--------------------GE-FVSLERLLAEADV 170 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECHHHHHH---STT--------------------SC-CCCHHHHHHHCSE
T ss_pred CEEEEEeCCHHHHHHHHHHHHC--CCEEEEEcCChhhh---ccC--------------------cc-cCCHHHHHHhCCE
Confidence 5899999999999999999988 99999999876432 111 01 2467788899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|.... | ...+..+.. +...+.++++.++|+.|+.++-..+.+.+.+++.
T Consensus 171 V~l~~Plt~~--g-----~~~T~~li~--~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g 224 (380)
T 2o4c_A 171 ISLHTPLNRD--G-----EHPTRHLLD--EPRLAALRPGTWLVNASRGAVVDNQALRRLLEGG 224 (380)
T ss_dssp EEECCCCCSS--S-----SSCCTTSBC--HHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred EEEeccCccc--c-----ccchhhhcC--HHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 9999885432 0 000111111 3456778999999999998777778888777764
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-07 Score=87.54 Aligned_cols=118 Identities=18% Similarity=0.276 Sum_probs=72.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~ 78 (362)
|||+|||+|.||.++|..|+.. |+ +|+++|+++++++.... ++.+..... ...++..++++ +++++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~--~~~~el~l~D~~~~k~~g~a~--------DL~~~~~~~~~~~~v~~~~~~-~a~~~ 69 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQ--DVAKEVVMVDIKDGMPQGKAL--------DMRESSPIHGFDTRVTGTNDY-GPTED 69 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCSSEEEEECSSTTHHHHHHH--------HHHHHHHHHTCCCEEEEESSS-GGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCchHHHHHHHH--------HHhccccccCCCcEEEECCCH-HHhCC
Confidence 8999999999999999999988 65 99999999987664321 011110000 11234445555 45999
Q ss_pred CcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH
Q 017997 79 ADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~ 135 (362)
||+||++.+.|..+ |+ ++ ..+...+++..+.+.++. ++.++++- |.|..+.-
T Consensus 70 aDvVii~ag~~~kp-G~--~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivv-tNPvd~~t 125 (314)
T 3nep_X 70 SDVCIITAGLPRSP-GM--SRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIVV-ANPLDVMT 125 (314)
T ss_dssp CSEEEECCCC----------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEEC-CSSHHHHH
T ss_pred CCEEEECCCCCCCC-CC--CHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEec-CCchhHHH
Confidence 99999999887543 21 11 112344566667777764 55666553 35666543
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=5.4e-07 Score=83.94 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=75.7
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+|||+|||+|.||.++|..++..+...+|+++|+++++.+....+ +.+... ......+.+++..+++++||
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~d--------l~~~~~-~~~~~~~i~~~~~~al~~aD 76 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMD--------FNHGKV-FAPKPVDIWHGDYDDCRDAD 76 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH--------HHHHTT-SSSSCCEEEECCGGGTTTCS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhh--------HHHHhh-hcCCCeEEEcCcHHHhCCCC
Confidence 369999999999999999999872224899999998866643221 111000 01112333334445699999
Q ss_pred EEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHH
Q 017997 81 IVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d-----~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~ 136 (362)
+||+|.|.|... |. + ..| .+.+.+..+.+.++. ++.++++- |.|.+..-.
T Consensus 77 vViia~~~~~~~-g~--~-r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~-tNPv~~~~~ 131 (316)
T 1ldn_A 77 LVVICAGANQKP-GE--T-RLDLVDKNIAIFRSIVESVMASG-FQGLFLVA-TNPVDILTY 131 (316)
T ss_dssp EEEECCSCCCCT-TT--C-SGGGHHHHHHHHHHHHHHHHHHT-CCSEEEEC-SSSHHHHHH
T ss_pred EEEEcCCCCCCC-CC--C-HHHHHHcChHHHHHHHHHHHHHC-CCCEEEEe-CCchHHHHH
Confidence 999999877543 21 1 122 244566667777775 56665553 567665443
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.8e-07 Score=91.46 Aligned_cols=122 Identities=11% Similarity=0.094 Sum_probs=79.5
Q ss_pred ceEEEEcCChh-HHHHHHHHHHc--CC-CCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYV-GGPTMAVIALK--CP-SIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~la~~--~~-G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~ 76 (362)
|||+|||+|.+ |.++|..|+.+ .. +++|++||+++++++.++.-. +.++.. ....+++.++|+.+++
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~--------~~~l~~~~~~~~I~~t~D~~eal 100 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGAC--------DVFIREKAPDIEFAATTDPEEAF 100 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHH--------HHHHHHHCTTSEEEEESCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHH--------HHHhccCCCCCEEEEECCHHHHH
Confidence 39999999999 55577777775 32 679999999999988764310 111111 1234688889998889
Q ss_pred cCCcEEEEeccCCCCCCCCCC---------CCCCC-------------hHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 77 SEADIVFVSVNTPTKTQGLGA---------GKAAD-------------LTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~---------~~~~d-------------~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
++||+||+++|++....- .. -...| +..+.++++.|.++. |+.++++ .|.|.+..
T Consensus 101 ~~AD~VViaag~~~~~g~-~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~-P~A~ii~-~TNPvdi~ 177 (472)
T 1u8x_X 101 TDVDFVMAHIRVGKYAMR-ALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLN-YSNPAAIV 177 (472)
T ss_dssp SSCSEEEECCCTTHHHHH-HHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE-CCSCHHHH
T ss_pred cCCCEEEEcCCCcccccc-chhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHC-CCeEEEE-eCCcHHHH
Confidence 999999999987532100 00 00001 124567777777776 5666654 56777754
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=98.63 E-value=5.3e-07 Score=83.70 Aligned_cols=120 Identities=17% Similarity=0.223 Sum_probs=77.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|++|.+++..|+..+...++.++|+++++++...... .+.......-+++. ++ .+++++||+
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl--------~~~~~~~~~~~v~~-~~-~~a~~~aD~ 70 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDI--------LHATPFAHPVWVWA-GS-YGDLEGARA 70 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHH--------HTTGGGSCCCEEEE-CC-GGGGTTEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHH--------HHhHhhcCCeEEEE-CC-HHHhCCCCE
Confidence 799999999999999999998733369999999998877432110 00000000112333 34 456999999
Q ss_pred EEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHH
Q 017997 82 VFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d-----~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l 137 (362)
||++.+.|... |. + ..| ...+++..+.+.++. ++.++++- |.|.++.-.+
T Consensus 71 Vii~ag~~~~~-g~--~-r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~-tNPv~~~t~~ 125 (310)
T 2xxj_A 71 VVLAAGVAQRP-GE--T-RLQLLDRNAQVFAQVVPRVLEAA-PEAVLLVA-TNPVDVMTQV 125 (310)
T ss_dssp EEECCCCCCCT-TC--C-HHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC-SSSHHHHHHH
T ss_pred EEECCCCCCCC-Cc--C-HHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEe-cCchHHHHHH
Confidence 99999887543 20 0 112 345666777777774 56666554 6787765443
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.6e-08 Score=85.49 Aligned_cols=96 Identities=13% Similarity=0.212 Sum_probs=67.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh-cCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V-~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~a 79 (362)
|||+|||+|.||..++..|.+. |++| .+||+++ +. .. ..+|+++++ .++
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~--g~~lv~v~d~~~-~~------------------------~~--~~~~~~~l~~~~~ 51 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERN--GFEIAAILDVRG-EH------------------------EK--MVRGIDEFLQREM 51 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEECSSC-CC------------------------TT--EESSHHHHTTSCC
T ss_pred CEEEEECCCHHHHHHHHHHhcC--CCEEEEEEecCc-ch------------------------hh--hcCCHHHHhcCCC
Confidence 7999999999999999999876 8997 6889873 11 01 456788877 699
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH---HHHHHHHHhc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA---EAIEKILTHN 144 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~---~~l~~~l~~~ 144 (362)
|+|++|+|+. ...+.+...++.|..|+++|+..+... +++.+..++.
T Consensus 52 DvVv~~~~~~------------------~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~ 101 (236)
T 2dc1_A 52 DVAVEAASQQ------------------AVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKT 101 (236)
T ss_dssp SEEEECSCHH------------------HHHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHH
T ss_pred CEEEECCCHH------------------HHHHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhc
Confidence 9999998732 112223344567888888888654433 4555555443
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-07 Score=86.28 Aligned_cols=111 Identities=18% Similarity=0.270 Sum_probs=71.4
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
|+||+|||+|.||..+|..++.+ |+ +|+++|++++...... ++. +....+++.++|+ +++++
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~--g~~~ev~L~Di~~~~~g~a~------------dl~-~~~~~~i~~t~d~-~~l~~ 77 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAK--GIADRLVLLDLSEGTKGATM------------DLE-IFNLPNVEISKDL-SASAH 77 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECCC-----CHH------------HHH-HHTCTTEEEESCG-GGGTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEcCCcchHHHHH------------HHh-hhcCCCeEEeCCH-HHHCC
Confidence 47999999999999999999998 78 9999999985211111 111 1122368888898 56999
Q ss_pred CcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
||+||+++..+ . .|+ ++ .-+...+++.++.+.++. ++.++++- |.|...
T Consensus 78 aD~Vi~aag~~-~-pG~--tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~-sNP~~~ 130 (303)
T 2i6t_A 78 SKVVIFTVNSL-G-SSQ--SYLDVVQSNVDMFRALVPALGHYS-QHSVLLVA-SQPVEI 130 (303)
T ss_dssp CSEEEECCCC------C--CHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEEC-SSSHHH
T ss_pred CCEEEEcCCCC-C-CCC--CHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEc-CChHHH
Confidence 99999998654 1 110 10 112334567778888886 67776553 345543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.3e-08 Score=75.93 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=53.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
+|+|.|+|+|.||..++..|.+. | ++|+++|+++++.+.+......... ..+.-..+..++++++
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~--g~~~v~~~~r~~~~~~~~~~~~~~~~~------------~d~~~~~~~~~~~~~~ 70 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTS--SNYSVTVADHDLAALAVLNRMGVATKQ------------VDAKDEAGLAKALGGF 70 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHC--SSEEEEEEESCHHHHHHHHTTTCEEEE------------CCTTCHHHHHHHTTTC
T ss_pred cCeEEEECCCHHHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHhCCCcEEE------------ecCCCHHHHHHHHcCC
Confidence 36899999999999999999998 8 9999999999999887632211100 0010112344557799
Q ss_pred cEEEEecc
Q 017997 80 DIVFVSVN 87 (362)
Q Consensus 80 DvVii~vp 87 (362)
|+||.|+|
T Consensus 71 d~vi~~~~ 78 (118)
T 3ic5_A 71 DAVISAAP 78 (118)
T ss_dssp SEEEECSC
T ss_pred CEEEECCC
Confidence 99999986
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.5e-08 Score=80.38 Aligned_cols=70 Identities=13% Similarity=0.309 Sum_probs=57.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..++..|... |++|+++|+++++.+.+.+.. .......++..++++++|+
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~~--g~~v~v~~r~~~~~~~~a~~~----------------~~~~~~~~~~~~~~~~~Di 83 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSYP--QYKVTVAGRNIDHVRAFAEKY----------------EYEYVLINDIDSLIKNNDV 83 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCTT--TCEEEEEESCHHHHHHHHHHH----------------TCEEEECSCHHHHHHTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHHHHHh----------------CCceEeecCHHHHhcCCCE
Confidence 5899999999999999999887 889999999999988765420 1123456677788899999
Q ss_pred EEEeccCC
Q 017997 82 VFVSVNTP 89 (362)
Q Consensus 82 Vii~vptp 89 (362)
||.|+|.+
T Consensus 84 vi~at~~~ 91 (144)
T 3oj0_A 84 IITATSSK 91 (144)
T ss_dssp EEECSCCS
T ss_pred EEEeCCCC
Confidence 99998865
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.58 E-value=4.3e-07 Score=84.89 Aligned_cols=116 Identities=18% Similarity=0.246 Sum_probs=77.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|.||.++|..|+.+ |+ +|+++|+++++++..... +...........+..++|+++ +++|
T Consensus 20 ~kV~ViGaG~vG~~~a~~l~~~--~~~~el~L~Di~~~~~~g~a~D--------L~~~~~~~~~~~i~~~~d~~~-~~~a 88 (331)
T 4aj2_A 20 NKITVVGVGAVGMACAISILMK--DLADELALVDVIEDKLKGEMMD--------LQHGSLFLKTPKIVSSKDYSV-TANS 88 (331)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHHHH--------HHHTGGGCSCCEEEECSSGGG-GTTE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCceEEEEeCChHHHHHHHHh--------hhhhhhccCCCeEEEcCCHHH-hCCC
Confidence 7999999999999999999998 66 899999999887753321 000000001123566788874 9999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~-----~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
|+||++...|..+ |+ + ..|+ ..+++..+.+.++ .++.++++- |.|..+.
T Consensus 89 DiVvi~aG~~~kp-G~--t-R~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvv-tNPvdi~ 142 (331)
T 4aj2_A 89 KLVIITAGARQQE-GE--S-RLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIV-SNPVDIL 142 (331)
T ss_dssp EEEEECCSCCCCT-TC--C-GGGGHHHHHHHHHHHHHHHHHH-CTTCEEEEC-SSSHHHH
T ss_pred CEEEEccCCCCCC-Cc--c-HHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe-cChHHHH
Confidence 9999999877543 21 1 2333 4456666777777 456666553 3566543
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=4.3e-07 Score=84.93 Aligned_cols=114 Identities=24% Similarity=0.324 Sum_probs=75.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHc---CCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNS---DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~---~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
|||+|||+|.+|.+++..|+.. ++ ++.++|+++++++.... ...++ ...++++.+..+++
T Consensus 10 ~KI~IiGaG~vG~~la~~l~~~--~~~~el~L~Di~~~~~~g~~~dl~~~~~~-------------~~~~~i~~~~~~a~ 74 (326)
T 2zqz_A 10 QKVILVGDGAVGSSYAYAMVLQ--GIAQEIGIVDIFKDKTKGDAIDLSNALPF-------------TSPKKIYSAEYSDA 74 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSCHHHHHHHHHHHHTTGGG-------------SCCCEEEECCGGGG
T ss_pred CEEEEECCCHHHHHHHHHHHcC--CCCCEEEEEeCCchHhHHHHHHHHHHHHh-------------cCCeEEEECCHHHh
Confidence 7999999999999999999987 55 89999999988765322 11011 12334434445669
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhcCCCCEEEEeeCCccccHHH
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~-----~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~ 136 (362)
++||+||++.+.|... |. + ..|+ ..+++..+.+.++. ++.+|++- |.|.++.-.
T Consensus 75 ~~aDvVii~ag~~~k~-g~--~-R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~-tNPv~~~t~ 133 (326)
T 2zqz_A 75 KDADLVVITAGAPQKP-GE--T-RLDLVNKNLKILKSIVDPIVDSG-FNGIFLVA-ANPVDILTY 133 (326)
T ss_dssp GGCSEEEECCCCC--------C-HHHHHHHHHHHHHHHHHHHHHHT-CCSEEEEC-SSSHHHHHH
T ss_pred CCCCEEEEcCCCCCCC-CC--C-HHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe-CCcHHHHHH
Confidence 9999999999877543 10 0 1122 45666777777775 66666553 777776543
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.9e-07 Score=82.46 Aligned_cols=119 Identities=22% Similarity=0.271 Sum_probs=79.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHh-hhcCCCEEEecCHHhhhcCCc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~-~~~~~~l~~t~d~~~a~~~aD 80 (362)
||+|||+|.||.++|..++.+ |+ +|+++|+++++++..... +.+... .....+++.++|+ +++++||
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~--~l~el~L~Di~~~~~~g~~~d--------l~~~~~~~~~~~~i~~t~d~-~a~~~aD 69 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR--GYDDLLLIARTPGKPQGEALD--------LAHAAAELGVDIRISGSNSY-EDMRGSD 69 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH--TCSCEEEECSSTTHHHHHHHH--------HHHHHHHHTCCCCEEEESCG-GGGTTCS
T ss_pred CEEEECcCHHHHHHHHHHHhC--CCCEEEEEcCChhhHHHHHHH--------HHHhhhhcCCCeEEEECCCH-HHhCCCC
Confidence 799999999999999999988 66 799999998877643210 111100 0113457777887 5699999
Q ss_pred EEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHH
Q 017997 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l 137 (362)
+||++.+.|... |. ++ ..+...+++.++.+.++. ++.++++- |.|.+..-.+
T Consensus 70 ~Vi~~ag~~~k~-G~--~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~-tNPv~~~t~~ 125 (308)
T 2d4a_B 70 IVLVTAGIGRKP-GM--TREQLLEANANTMADLAEKIKAYA-KDAIVVIT-TNPVDAMTYV 125 (308)
T ss_dssp EEEECCSCCCCS-SC--CTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC-CSSHHHHHHH
T ss_pred EEEEeCCCCCCC-CC--cHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe-CCchHHHHHH
Confidence 999999877543 21 11 112234667777888775 66666554 5677665433
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.3e-07 Score=86.23 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=56.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--C
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (362)
+||+|||+|.||..++..|.+. ++++|+ ++|+++++.+.+.+. .+ ....+|++++++ +
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~-----------------~g-~~~~~~~~~~l~~~~ 65 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAAN-PDLELVVIADPFIEGAQRLAEA-----------------NG-AEAVASPDEVFARDD 65 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHT-----------------TT-CEEESSHHHHTTCSC
T ss_pred eEEEEECCcHHHHHHHHHHHhC-CCcEEEEEECCCHHHHHHHHHH-----------------cC-CceeCCHHHHhcCCC
Confidence 6899999999999999999875 478877 689999998877652 12 466788998887 8
Q ss_pred CcEEEEeccCC
Q 017997 79 ADIVFVSVNTP 89 (362)
Q Consensus 79 aDvVii~vptp 89 (362)
+|+|++|+|+.
T Consensus 66 ~D~V~i~tp~~ 76 (344)
T 3euw_A 66 IDGIVIGSPTS 76 (344)
T ss_dssp CCEEEECSCGG
T ss_pred CCEEEEeCCch
Confidence 99999998753
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-07 Score=84.37 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=69.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||.+++..|.+. |++|+++|+++++.+.+.+.. .+.+.+++.++++++|+
T Consensus 130 ~~v~iiGaG~~g~aia~~L~~~--g~~V~v~~r~~~~~~~l~~~~------------------g~~~~~~~~~~~~~aDi 189 (275)
T 2hk9_A 130 KSILVLGAGGASRAVIYALVKE--GAKVFLWNRTKEKAIKLAQKF------------------PLEVVNSPEEVIDKVQV 189 (275)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSHHHHHHHTTTS------------------CEEECSCGGGTGGGCSE
T ss_pred CEEEEECchHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHc------------------CCeeehhHHhhhcCCCE
Confidence 6899999999999999999998 889999999999988876421 24455577777899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
||.|+|.+... +.. ..+. .+.++++.+|++.++
T Consensus 190 Vi~atp~~~~~---------~~~---~~i~--~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 190 IVNTTSVGLKD---------EDP---EIFN--YDLIKKDHVVVDIIY 222 (275)
T ss_dssp EEECSSTTSST---------TCC---CSSC--GGGCCTTSEEEESSS
T ss_pred EEEeCCCCCCC---------CCC---CCCC--HHHcCCCCEEEEcCC
Confidence 99999865421 000 0010 245778899888766
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.7e-07 Score=85.47 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=55.3
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (362)
|+||+|||+|.||..++..|.+. ++++++ ++|+++++.+.+.+. -++. .+|++++++
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~~~------------------~~~~-~~~~~~~l~~~ 62 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGN-ADARLVAVADAFPAAAEAIAGA------------------YGCE-VRTIDAIEAAA 62 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHH------------------TTCE-ECCHHHHHHCT
T ss_pred ceEEEEECCCHHHHHHHHHHhhC-CCcEEEEEECCCHHHHHHHHHH------------------hCCC-cCCHHHHhcCC
Confidence 36999999999999999999875 478877 689999998877642 1234 678888776
Q ss_pred CCcEEEEeccCC
Q 017997 78 EADIVFVSVNTP 89 (362)
Q Consensus 78 ~aDvVii~vptp 89 (362)
++|+|++|+|+.
T Consensus 63 ~~D~V~i~tp~~ 74 (331)
T 4hkt_A 63 DIDAVVICTPTD 74 (331)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEEeCCch
Confidence 899999998753
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=5.8e-07 Score=74.60 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=37.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++|.|+|+|.+|..++..|.+. |++|+++|+++++++.++
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~--g~~V~vid~~~~~~~~~~ 59 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSS--GHSVVVVDKNEYAFHRLN 59 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGGGGSC
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHH
Confidence 6899999999999999999998 899999999999887765
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.8e-07 Score=86.27 Aligned_cols=70 Identities=16% Similarity=0.278 Sum_probs=56.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--C
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (362)
+||+|||+|.||..++..|.+..++++++ ++|+++++.+.+.+. -++...+|++++++ +
T Consensus 14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~------------------~~~~~~~~~~~ll~~~~ 75 (354)
T 3q2i_A 14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER------------------TGARGHASLTDMLAQTD 75 (354)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH------------------HCCEEESCHHHHHHHCC
T ss_pred ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH------------------cCCceeCCHHHHhcCCC
Confidence 68999999999999999998763478865 789999998876541 12467789988776 8
Q ss_pred CcEEEEeccCC
Q 017997 79 ADIVFVSVNTP 89 (362)
Q Consensus 79 aDvVii~vptp 89 (362)
+|+|++|+|+.
T Consensus 76 ~D~V~i~tp~~ 86 (354)
T 3q2i_A 76 ADIVILTTPSG 86 (354)
T ss_dssp CSEEEECSCGG
T ss_pred CCEEEECCCcH
Confidence 99999998753
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=5.7e-07 Score=83.86 Aligned_cols=118 Identities=21% Similarity=0.253 Sum_probs=72.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|.||.++|..|+.. |+ +++++|+++++++......... .. . ....+.+++..+++++|
T Consensus 10 ~kV~ViGaG~vG~~~a~~l~~~--~~~~el~l~D~~~~k~~g~a~DL~~~--------~~-~-~~~~~i~~~~~~a~~~a 77 (326)
T 3vku_A 10 QKVILVGDGAVGSSYAYAMVLQ--GIAQEIGIVDIFKDKTKGDAIDLEDA--------LP-F-TSPKKIYSAEYSDAKDA 77 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSCHHHHHHHHHHHHTT--------GG-G-SCCCEEEECCGGGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEeCChHHHHHHHhhHhhh--------hh-h-cCCcEEEECcHHHhcCC
Confidence 7999999999999999999988 66 8999999999887443210000 00 0 01234444434569999
Q ss_pred cEEEEeccCCCCCCCCCCC--CCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 80 DIVFVSVNTPTKTQGLGAG--KAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~--~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
|+||++.+.|..+ |.... -..+...+++..+.+.++. ++.++++- |.|..+.
T Consensus 78 DiVvi~ag~~~kp-G~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~ilvv-tNPvdi~ 131 (326)
T 3vku_A 78 DLVVITAGAPQKP-GETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVA-ANPVDIL 131 (326)
T ss_dssp SEEEECCCCC-----------------CHHHHHHHHHTTT-CCSEEEEC-SSSHHHH
T ss_pred CEEEECCCCCCCC-CchHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEc-cCchHHH
Confidence 9999998877543 21100 0112344667777888775 45665543 4566543
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=98.51 E-value=8.5e-07 Score=83.08 Aligned_cols=116 Identities=16% Similarity=0.259 Sum_probs=78.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCC-------eEEEEeCC----HHHHHH----HHcCCCCCCCCChHHHHhhhcCCC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDIS----VSRINA----WNSDQLPIYEPGLDGVVKQCRGKN 65 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~-------~V~~~d~~----~~~~~~----l~~~~~~~~e~~l~~~~~~~~~~~ 65 (362)
|||+|+|+ |++|.+++..|+.. |+ +|.++|++ +++.+. +.....++ ...
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~--~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-------------~~~ 70 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANG--DMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-------------LAG 70 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT--TTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-------------EEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-------------cCc
Confidence 79999997 99999999999987 64 89999999 655543 33321111 134
Q ss_pred EEEecCHHhhhcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHH
Q 017997 66 LFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (362)
Q Consensus 66 l~~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~ 136 (362)
++.+++..+++++||+||++...|... +. ++ ..+...+++.++.+.++..++..+++.| .|.++.-.
T Consensus 71 i~~~~~~~~al~~aD~Vi~~ag~~~~~-g~--~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S-NPv~~~t~ 141 (329)
T 1b8p_A 71 MTAHADPMTAFKDADVALLVGARPRGP-GM--ERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG-NPANTNAY 141 (329)
T ss_dssp EEEESSHHHHTTTCSEEEECCCCCCCT-TC--CHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS-SSHHHHHH
T ss_pred EEEecCcHHHhCCCCEEEEeCCCCCCC-CC--CHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc-CchHHHHH
Confidence 677888888899999999998866432 10 00 0122445666777777754566666655 66665443
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-07 Score=86.10 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=53.8
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
+||+|||+|.||.. ++..|.+. ++++++ ++|+++++.+.+.+.. ++...+|+++.++++
T Consensus 7 ~~igiIG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~~------------------~~~~~~~~~~ll~~~ 67 (308)
T 3uuw_A 7 IKMGMIGLGSIAQKAYLPILTKS-ERFEFVGAFTPNKVKREKICSDY------------------RIMPFDSIESLAKKC 67 (308)
T ss_dssp CEEEEECCSHHHHHHTHHHHTSC-SSSEEEEEECSCHHHHHHHHHHH------------------TCCBCSCHHHHHTTC
T ss_pred CcEEEEecCHHHHHHHHHHHHhC-CCeEEEEEECCCHHHHHHHHHHc------------------CCCCcCCHHHHHhcC
Confidence 58999999999996 78878764 478877 7899999988776420 122267888888899
Q ss_pred cEEEEeccCC
Q 017997 80 DIVFVSVNTP 89 (362)
Q Consensus 80 DvVii~vptp 89 (362)
|+|++|+|+.
T Consensus 68 D~V~i~tp~~ 77 (308)
T 3uuw_A 68 DCIFLHSSTE 77 (308)
T ss_dssp SEEEECCCGG
T ss_pred CEEEEeCCcH
Confidence 9999998753
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.9e-07 Score=85.83 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=55.4
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (362)
||||+|||+|.||..++..|.+. ++++++ ++|+++++.+.+.+.. +.....+|++++++
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~ll~~~ 63 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMI-DDAILYAISDVREDRLREMKEKL-----------------GVEKAYKDPHELIEDP 63 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGS-TTEEEEEEECSCHHHHHHHHHHH-----------------TCSEEESSHHHHHHCT
T ss_pred eeEEEEEcCCHHHHHHHHHHHhC-CCcEEEEEECCCHHHHHHHHHHh-----------------CCCceeCCHHHHhcCC
Confidence 36999999999999999998874 477876 6799999988765420 11246688888777
Q ss_pred CCcEEEEeccCC
Q 017997 78 EADIVFVSVNTP 89 (362)
Q Consensus 78 ~aDvVii~vptp 89 (362)
++|+|++|+|+.
T Consensus 64 ~~D~V~i~tp~~ 75 (344)
T 3ezy_A 64 NVDAVLVCSSTN 75 (344)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEEcCCCc
Confidence 899999998753
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.8e-07 Score=83.60 Aligned_cols=95 Identities=15% Similarity=0.238 Sum_probs=70.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||+++++.+.+.+.. .......++++.++++|+
T Consensus 158 ~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~d~~~~~~~~~~~~g-----------------~~~~~~~~l~~~l~~aDv 218 (300)
T 2rir_A 158 SQVAVLGLGRTGMTIARTFAAL--GANVKVGARSSAHLARITEMG-----------------LVPFHTDELKEHVKDIDI 218 (300)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTT-----------------CEEEEGGGHHHHSTTCSE
T ss_pred CEEEEEcccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCC-----------------CeEEchhhHHHHhhCCCE
Confidence 5899999999999999999988 899999999998877654310 011112456777899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|++++|... .+ . ...+.++++.++++.+.-+.++
T Consensus 219 Vi~~~p~~~----------i~----~----~~~~~mk~g~~lin~a~g~~~~ 252 (300)
T 2rir_A 219 CINTIPSMI----------LN----Q----TVLSSMTPKTLILDLASRPGGT 252 (300)
T ss_dssp EEECCSSCC----------BC----H----HHHTTSCTTCEEEECSSTTCSB
T ss_pred EEECCChhh----------hC----H----HHHHhCCCCCEEEEEeCCCCCc
Confidence 999988532 11 1 2345688999999988766555
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.49 E-value=3.2e-07 Score=74.87 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=69.3
Q ss_pred ceEEEEcC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
.+|+|||+ |.||..++.+|.+. ||+|+.+|.+.+.+ ..+....+++++.+
T Consensus 15 ~~IavIGaS~~~g~~G~~~~~~L~~~--G~~V~~vnp~~~~i------------------------~G~~~~~s~~el~~ 68 (138)
T 1y81_A 15 RKIALVGASKNPAKYGNIILKDLLSK--GFEVLPVNPNYDEI------------------------EGLKCYRSVRELPK 68 (138)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT--TCEEEEECTTCSEE------------------------TTEECBSSGGGSCT
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHC--CCEEEEeCCCCCeE------------------------CCeeecCCHHHhCC
Confidence 58999999 99999999999998 99866666542111 13566677888667
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
.+|++++|+|. ..+.++++++.+ ...+.+++..||. .+++.+..++.
T Consensus 69 ~vDlvii~vp~---------------~~v~~v~~~~~~-~g~~~i~~~~~~~----~~~l~~~a~~~ 115 (138)
T 1y81_A 69 DVDVIVFVVPP---------------KVGLQVAKEAVE-AGFKKLWFQPGAE----SEEIRRFLEKA 115 (138)
T ss_dssp TCCEEEECSCH---------------HHHHHHHHHHHH-TTCCEEEECTTSC----CHHHHHHHHHH
T ss_pred CCCEEEEEeCH---------------HHHHHHHHHHHH-cCCCEEEEcCccH----HHHHHHHHHHC
Confidence 89999999983 245677777666 4556677765553 46666666654
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-06 Score=79.38 Aligned_cols=119 Identities=19% Similarity=0.255 Sum_probs=75.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|.+|.++|..|+.++.-.++.++|+++++.+..... +....... ...++..++|+++ +++||
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~D--------L~h~~~~~~~~~~i~~~~d~~~-~~~aD 71 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMD--------LAHAAAGIDKYPKIVGGADYSL-LKGSE 71 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHH--------HHHHHGGGTCCCEEEEESCGGG-GTTCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhh--------hhcccccCCCCCeEecCCCHHH-hCCCC
Confidence 89999999999999999998872224899999998776532210 11100000 1123566778865 99999
Q ss_pred EEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
+|+++-..|..+ |+ +| ..+.+.+++..+.+.++.+ +.++++ -|.|..+.
T Consensus 72 vVvitAG~prkp-Gm--tR~dLl~~Na~I~~~i~~~i~~~~p-~aivlv-vsNPvd~~ 124 (294)
T 2x0j_A 72 IIVVTAGLARKP-GM--TRLDLAHKNAGIIKDIAKKIVENAP-ESKILV-VTNPMDVM 124 (294)
T ss_dssp EEEECCCCCCCS-SS--CHHHHHHHHHHHHHHHHHHHHTTST-TCEEEE-CSSSHHHH
T ss_pred EEEEecCCCCCC-CC--chHHHHHHHHHHHHHHHHHHHhcCC-ceEEEE-ecCcchhh
Confidence 999998877543 21 11 1123455666777777754 455543 35566554
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.48 E-value=4.4e-07 Score=88.35 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=79.3
Q ss_pred ceEEEEcCChh-HHHHHHHHHH--cC-CCCeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHh
Q 017997 2 VKICCIGAGYV-GGPTMAVIAL--KC-PSIEVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEK 74 (362)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~la~--~~-~G~~V~~~d~~~--~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~ 74 (362)
|||+|||+|.+ |.+++..|+. .. ++++|++||+++ ++++.++.- ...+... ....+++.++|+.+
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~--------~~~~~~~~~~~~~i~~t~D~~e 79 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGAL--------AKRMVEKAGVPIEIHLTLDRRR 79 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHH--------HHHHHHHTTCCCEEEEESCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHH--------HHHHHhhcCCCcEEEEeCCHHH
Confidence 69999999999 8788888887 21 257899999999 888775421 0111111 12345788899988
Q ss_pred hhcCCcEEEEeccCCCCCCCCCCC---------CCCC-------------hHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 75 HVSEADIVFVSVNTPTKTQGLGAG---------KAAD-------------LTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~~g~~~~---------~~~d-------------~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
++++||+||+++|.+... +...+ ...| +..+.++++.|.++. |+.++++ .|.|.+
T Consensus 80 al~gAD~VVitagv~~~~-~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~-P~a~ii~-~tNPvd 156 (450)
T 1s6y_A 80 ALDGADFVTTQFRVGGLE-ARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLIN-FTNPAG 156 (450)
T ss_dssp HHTTCSEEEECCCTTHHH-HHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE-CSSSHH
T ss_pred HhCCCCEEEEcCCCCCCc-chhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHC-CCeEEEE-eCCcHH
Confidence 899999999999875321 00000 0001 134667777888776 5666654 567776
Q ss_pred cH
Q 017997 133 TA 134 (362)
Q Consensus 133 t~ 134 (362)
..
T Consensus 157 iv 158 (450)
T 1s6y_A 157 MV 158 (450)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-06 Score=81.03 Aligned_cols=95 Identities=14% Similarity=0.183 Sum_probs=69.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |.+|++||+++++.+.+.+-. ....-..++++.++++|+
T Consensus 156 ~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~g-----------------~~~~~~~~l~~~l~~aDv 216 (293)
T 3d4o_A 156 ANVAVLGLGRVGMSVARKFAAL--GAKVKVGARESDLLARIAEMG-----------------MEPFHISKAAQELRDVDV 216 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTT-----------------SEEEEGGGHHHHTTTCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHCC-----------------CeecChhhHHHHhcCCCE
Confidence 5899999999999999999988 899999999998776554310 011112456677899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|++++|... .+ .+ ..+.++++.++++.+..+.++
T Consensus 217 Vi~~~p~~~----------i~----~~----~l~~mk~~~~lin~ar~~~~~ 250 (293)
T 3d4o_A 217 CINTIPALV----------VT----AN----VLAEMPSHTFVIDLASKPGGT 250 (293)
T ss_dssp EEECCSSCC----------BC----HH----HHHHSCTTCEEEECSSTTCSB
T ss_pred EEECCChHH----------hC----HH----HHHhcCCCCEEEEecCCCCCC
Confidence 999987432 11 11 234578899999988766555
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-06 Score=71.74 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=39.4
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD 45 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~ 45 (362)
|++|.|+|+|.+|..+|..|.+. |++|+++|+++++++.+.+.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~--g~~V~~id~~~~~~~~~~~~ 48 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAA--GKKVLAVDKSKEKIELLEDE 48 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC
Confidence 35899999999999999999999 99999999999999988753
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=8.6e-07 Score=83.44 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=55.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCC-CEEEecCHHhhhcC-
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGK-NLFFSTDVEKHVSE- 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~-~l~~t~d~~~a~~~- 78 (362)
+||+|||+|.||..++..|.+..++++++ ++|+++++.+.+.+.. + .....+|+++++++
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~-----------------g~~~~~~~~~~~ll~~~ 65 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQY-----------------QLNATVYPNDDSLLADE 65 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHT-----------------TCCCEEESSHHHHHHCT
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHh-----------------CCCCeeeCCHHHHhcCC
Confidence 59999999999999999998433478866 6799999988776421 1 14567889887765
Q ss_pred -CcEEEEeccCC
Q 017997 79 -ADIVFVSVNTP 89 (362)
Q Consensus 79 -aDvVii~vptp 89 (362)
+|+|++|+|+.
T Consensus 66 ~~D~V~i~tp~~ 77 (344)
T 3mz0_A 66 NVDAVLVTSWGP 77 (344)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEECCCch
Confidence 99999998753
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.2e-07 Score=87.04 Aligned_cols=76 Identities=21% Similarity=0.205 Sum_probs=57.4
Q ss_pred ceEEEEcCChh--HHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGAGYV--GGPTMAVIALKC--PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~--G~~lA~~la~~~--~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
|||+|||+|.| |..++..|+... .| +|++||+++++++.++.-...+.+ ...++++|+|.++|++
T Consensus 6 ~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~----------~~~~I~~TtD~~eAl~ 74 (450)
T 3fef_A 6 IKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGN----------GRWRYEAVSTLKKALS 74 (450)
T ss_dssp EEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTT----------SCEEEEEESSHHHHHT
T ss_pred CEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhc----------cCCeEEEECCHHHHhc
Confidence 59999999996 678888888621 16 999999999888765431111111 1246889999999999
Q ss_pred CCcEEEEeccC
Q 017997 78 EADIVFVSVNT 88 (362)
Q Consensus 78 ~aDvVii~vpt 88 (362)
+||+||++++.
T Consensus 75 dADfVI~airv 85 (450)
T 3fef_A 75 AADIVIISILP 85 (450)
T ss_dssp TCSEEEECCCS
T ss_pred CCCEEEecccc
Confidence 99999999963
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=4e-07 Score=85.95 Aligned_cols=103 Identities=12% Similarity=0.024 Sum_probs=74.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..++..|....+..+|.+||+++++.+++.+.... .++ -.+...++++++++++|+
T Consensus 130 ~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~--~~g----------~~~~~~~~~~eav~~aDi 197 (350)
T 1x7d_A 130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE--YSG----------LTIRRASSVAEAVKGVDI 197 (350)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT--CTT----------CEEEECSSHHHHHTTCSE
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh--ccC----------ceEEEeCCHHHHHhcCCE
Confidence 58999999999999998886543367999999999999887652100 000 124567788888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|++|+|++... + .+. ...+++++.|+..++..|+.
T Consensus 198 Vi~aTps~~~~--------p-------vl~--~~~l~~G~~V~~vgs~~p~~ 232 (350)
T 1x7d_A 198 ITTVTADKAYA--------T-------IIT--PDMLEPGMHLNAVGGDCPGK 232 (350)
T ss_dssp EEECCCCSSEE--------E-------EEC--GGGCCTTCEEEECSCCBTTB
T ss_pred EEEeccCCCCC--------c-------eec--HHHcCCCCEEEECCCCCCCc
Confidence 99998864210 0 000 14678999999989887774
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.41 E-value=9e-07 Score=83.65 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=53.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh--cC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV--SE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~--~~ 78 (362)
+||+|||+|.||..++..|.+. ++++|+ ++|+++++.+.+.+.. ++...+|+++++ .+
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-~~~~lvav~d~~~~~~~~~~~~~------------------g~~~~~~~~~~l~~~~ 66 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKS-EKLKLVTCYSRTEDKREKFGKRY------------------NCAGDATMEALLARED 66 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-SSEEEEEEECSSHHHHHHHHHHH------------------TCCCCSSHHHHHHCSS
T ss_pred ceEEEEccCHHHHHHHHHHHhC-CCcEEEEEECCCHHHHHHHHHHc------------------CCCCcCCHHHHhcCCC
Confidence 4899999999999999988865 478865 7799999988765410 123357888877 57
Q ss_pred CcEEEEeccCC
Q 017997 79 ADIVFVSVNTP 89 (362)
Q Consensus 79 aDvVii~vptp 89 (362)
+|+|++|+|+.
T Consensus 67 ~D~V~i~tp~~ 77 (354)
T 3db2_A 67 VEMVIITVPND 77 (354)
T ss_dssp CCEEEECSCTT
T ss_pred CCEEEEeCChH
Confidence 99999998864
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.8e-06 Score=69.17 Aligned_cols=71 Identities=14% Similarity=0.248 Sum_probs=52.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHhhhcCCCEEEecCHHh-hhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEK-HVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~-a~~~ 78 (362)
++|.|+|+|.+|..+|..|.+. |++|+++|+|+++++.+++...+.. +....+. +.+ .+.+
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~--------------l~~a~i~~ 71 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS--DIPLVVIETSRTRVDELRERGVRAVLGNAANEEI--------------MQLAHLEC 71 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHH--------------HHHTTGGG
T ss_pred CCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHH--------------HHhcCccc
Confidence 4799999999999999999998 9999999999999998876322211 1111111 111 2578
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
+|++|+++|.
T Consensus 72 ad~vi~~~~~ 81 (140)
T 3fwz_A 72 AKWLILTIPN 81 (140)
T ss_dssp CSEEEECCSC
T ss_pred CCEEEEECCC
Confidence 9999999874
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.40 E-value=7.9e-07 Score=82.63 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=51.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--C
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V-~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (362)
|||+|||+|.||..++..|.+. +++++ .++|+++++.+.+.+. +...+|++++++ +
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~-~~~~~v~v~d~~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~ 69 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGL-PGAALVRLASSNPDNLALVPPG--------------------CVIESDWRSVVSAPE 69 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHC-TTEEEEEEEESCHHHHTTCCTT--------------------CEEESSTHHHHTCTT
T ss_pred ceEEEECCcHHHHHHHHHHHhC-CCcEEEEEEeCCHHHHHHHHhh--------------------CcccCCHHHHhhCCC
Confidence 6899999999999999999875 36775 5889999887654321 345677888775 7
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
+|+|++|+|+
T Consensus 70 ~D~V~i~tp~ 79 (315)
T 3c1a_A 70 VEAVIIATPP 79 (315)
T ss_dssp CCEEEEESCG
T ss_pred CCEEEEeCCh
Confidence 9999999874
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=4.4e-07 Score=82.21 Aligned_cols=103 Identities=18% Similarity=0.147 Sum_probs=71.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIV 82 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (362)
+|+|||+|.||.+++..|.+. |++|+++|+++++.+.+.+.. + .. .++++++ +++|+|
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~--g~~v~v~~r~~~~~~~l~~~~-----------------~-~~-~~~~~~~-~~~Div 175 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREA--GLEVWVWNRTPQRALALAEEF-----------------G-LR-AVPLEKA-REARLL 175 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHH-----------------T-CE-ECCGGGG-GGCSEE
T ss_pred eEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-----------------c-cc-hhhHhhc-cCCCEE
Confidence 699999999999999999998 889999999998887765410 1 12 3466776 899999
Q ss_pred EEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHh
Q 017997 83 FVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (362)
Q Consensus 83 ii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~ 143 (362)
|+|+|.+... +.. ..+. .+.++++++|++.++.|..| ++.+..++
T Consensus 176 i~~tp~~~~~---------~~~---~~l~--~~~l~~g~~viD~~~~p~~t--~l~~~a~~ 220 (263)
T 2d5c_A 176 VNATRVGLED---------PSA---SPLP--AELFPEEGAAVDLVYRPLWT--RFLREAKA 220 (263)
T ss_dssp EECSSTTTTC---------TTC---CSSC--GGGSCSSSEEEESCCSSSSC--HHHHHHHH
T ss_pred EEccCCCCCC---------CCC---CCCC--HHHcCCCCEEEEeecCCccc--HHHHHHHH
Confidence 9998865321 000 0011 34577889988877765544 34444433
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.39 E-value=6.1e-07 Score=84.04 Aligned_cols=70 Identities=9% Similarity=0.091 Sum_probs=54.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--C
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (362)
+||+|||+|.||..++..|.+. ++++|+ ++|+++++.+.+.+.. +....++|++++++ +
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~ll~~~~ 67 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRES-AQAEVRGIASRRLENAQKMAKEL-----------------AIPVAYGSYEELCKDET 67 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHHS-SSEEEEEEBCSSSHHHHHHHHHT-----------------TCCCCBSSHHHHHHCTT
T ss_pred EEEEEECchHHHHHHHHHHHhC-CCcEEEEEEeCCHHHHHHHHHHc-----------------CCCceeCCHHHHhcCCC
Confidence 5899999999999999999885 377877 6799999888765421 11134678888776 7
Q ss_pred CcEEEEeccCC
Q 017997 79 ADIVFVSVNTP 89 (362)
Q Consensus 79 aDvVii~vptp 89 (362)
+|+|++|+|+.
T Consensus 68 ~D~V~i~tp~~ 78 (330)
T 3e9m_A 68 IDIIYIPTYNQ 78 (330)
T ss_dssp CSEEEECCCGG
T ss_pred CCEEEEcCCCH
Confidence 99999998753
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.2e-07 Score=74.26 Aligned_cols=97 Identities=13% Similarity=0.034 Sum_probs=67.8
Q ss_pred ceEEEEcC----ChhHHHHHHHHHHcCCCCeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~la~~~~G~~V~~~d~~~--~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
.+|+|||+ |.||..++.+|.+. ||+|+.+|.+. +.+ ..+.+..+++++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~--G~~v~~vnp~~~g~~i------------------------~G~~~~~sl~el 67 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQ--GYHVIPVSPKVAGKTL------------------------LGQQGYATLADV 67 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHH--TCCEEEECSSSTTSEE------------------------TTEECCSSTTTC
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHC--CCEEEEeCCccccccc------------------------CCeeccCCHHHc
Confidence 47999999 89999999999998 89977766643 111 125566677776
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
...+|++++|+|.+ .+.++++++.+ ...+.+++..||. .+++.+.+++.
T Consensus 68 ~~~~Dlvii~vp~~---------------~v~~v~~~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~ 116 (145)
T 2duw_A 68 PEKVDMVDVFRNSE---------------AAWGVAQEAIA-IGAKTLWLQLGVI----NEQAAVLAREA 116 (145)
T ss_dssp SSCCSEEECCSCST---------------HHHHHHHHHHH-HTCCEEECCTTCC----CHHHHHHHHTT
T ss_pred CCCCCEEEEEeCHH---------------HHHHHHHHHHH-cCCCEEEEcCChH----HHHHHHHHHHc
Confidence 67899999999832 35677777666 3455666654433 45666666654
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.3e-06 Score=80.42 Aligned_cols=70 Identities=14% Similarity=0.230 Sum_probs=53.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--C
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V-~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (362)
+||+|||+|.||..++..|.++.+++++ .++|+++++.+.+.+.. +...+.+|++++++ +
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~-----------------g~~~~~~~~~~~l~~~~ 71 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL-----------------GVETTYTNYKDMIDTEN 71 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT-----------------CCSEEESCHHHHHTTSC
T ss_pred ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh-----------------CCCcccCCHHHHhcCCC
Confidence 6999999999999999998822247775 57899999988765420 11145678888775 6
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
+|+|++|+|+
T Consensus 72 ~D~V~i~tp~ 81 (346)
T 3cea_A 72 IDAIFIVAPT 81 (346)
T ss_dssp CSEEEECSCG
T ss_pred CCEEEEeCCh
Confidence 9999999874
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.5e-06 Score=80.83 Aligned_cols=68 Identities=19% Similarity=0.283 Sum_probs=52.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--C
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (362)
+||+|||+|.||...+..|.+. ++++|+ ++|+++++.+...+- ++...+|+++.++ +
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~a~~~-------------------g~~~~~~~~~ll~~~~ 65 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAA-DNLEVHGVFDILAEKREAAAQK-------------------GLKIYESYEAVLADEK 65 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTS-TTEEEEEEECSSHHHHHHHHTT-------------------TCCBCSCHHHHHHCTT
T ss_pred CcEEEECcCHHHHHHHHHHHhC-CCcEEEEEEcCCHHHHHHHHhc-------------------CCceeCCHHHHhcCCC
Confidence 4799999999999999888765 477876 569999987754331 1345678888776 7
Q ss_pred CcEEEEeccCC
Q 017997 79 ADIVFVSVNTP 89 (362)
Q Consensus 79 aDvVii~vptp 89 (362)
.|+|++|+|+.
T Consensus 66 ~D~V~i~tp~~ 76 (359)
T 3e18_A 66 VDAVLIATPND 76 (359)
T ss_dssp CCEEEECSCGG
T ss_pred CCEEEEcCCcH
Confidence 89999998753
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-06 Score=81.21 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=49.7
Q ss_pred CceEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh-cC
Q 017997 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SE 78 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~ 78 (362)
+|||+|||+|.||.. ++..|.+. ++++|+++|+++++.+.+.+.. +.-....+..+.+ .+
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~-~~~~l~v~d~~~~~~~~~a~~~-----------------g~~~~~~~~~~~l~~~ 63 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQW-PDIELVLCTRNPKVLGTLATRY-----------------RVSATCTDYRDVLQYG 63 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTS-TTEEEEEECSCHHHHHHHHHHT-----------------TCCCCCSSTTGGGGGC
T ss_pred CcEEEEECCCHHHHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHc-----------------CCCccccCHHHHhhcC
Confidence 369999999999984 88888764 3788889999999988775421 0001022333345 68
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
+|+|++|+|+
T Consensus 64 ~D~V~i~tp~ 73 (323)
T 1xea_A 64 VDAVMIHAAT 73 (323)
T ss_dssp CSEEEECSCG
T ss_pred CCEEEEECCc
Confidence 9999999874
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2.3e-06 Score=69.28 Aligned_cols=41 Identities=32% Similarity=0.486 Sum_probs=37.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++|.|+|+|.+|..++..|.+. |++|+++|+++++++.+.+
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~--g~~v~~~d~~~~~~~~~~~ 47 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINEEKVNAYAS 47 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCCEEEESCHHHHHTTTT
T ss_pred CcEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 4699999999999999999998 8999999999998877654
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-06 Score=81.32 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=55.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCC-CEEEecCHHhhhc--
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGK-NLFFSTDVEKHVS-- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~-~l~~t~d~~~a~~-- 77 (362)
+||+|||+|.||..++..|.+..++++++ ++|+++++.+.+.+.. + .....+|++++++
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~-----------------g~~~~~~~~~~~ll~~~ 86 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKY-----------------AIEAKDYNDYHDLINDK 86 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHH-----------------TCCCEEESSHHHHHHCT
T ss_pred eeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh-----------------CCCCeeeCCHHHHhcCC
Confidence 58999999999999999998433478876 6899999888765420 1 1456788888776
Q ss_pred CCcEEEEeccCC
Q 017997 78 EADIVFVSVNTP 89 (362)
Q Consensus 78 ~aDvVii~vptp 89 (362)
+.|+|++|+|+.
T Consensus 87 ~~D~V~i~tp~~ 98 (357)
T 3ec7_A 87 DVEVVIITASNE 98 (357)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEEcCCcH
Confidence 589999998753
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.9e-06 Score=76.92 Aligned_cols=107 Identities=16% Similarity=0.135 Sum_probs=65.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~-~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|+|+|.||..++..+.+. ++++++ +|++++. . ..+..++|+++.+ ++
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~--~~eLva~~d~~~~~-----~-------------------~gv~v~~dl~~l~-~~ 55 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEK--GHEIVGVIENTPKA-----T-------------------TPYQQYQHIADVK-GA 55 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEECSSCC--------------------------CCSCBCSCTTTCT-TC
T ss_pred ceEEEEECcCHHHHHHHHHHHhC--CCEEEEEEecCccc-----c-------------------CCCceeCCHHHHh-CC
Confidence 68999999999999999999887 457665 7887541 0 1234557777766 99
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|++|-++. | ..+.+.+ + +..+.-+|+.+| |.++.-.+.+.+.. ....++++|.|.
T Consensus 56 DVvIDft~-p-----------------~a~~~~~-~-l~~g~~vVigTT---G~s~e~~~~l~~aa--~~~~v~~a~N~S 110 (243)
T 3qy9_A 56 DVAIDFSN-P-----------------NLLFPLL-D-EDFHLPLVVATT---GEKEKLLNKLDELS--QNMPVFFSANMS 110 (243)
T ss_dssp SEEEECSC-H-----------------HHHHHHH-T-SCCCCCEEECCC---SSHHHHHHHHHHHT--TTSEEEECSSCC
T ss_pred CEEEEeCC-h-----------------HHHHHHH-H-HhcCCceEeCCC---CCCHHHHHHHHHHH--hcCCEEEECCcc
Confidence 99985532 2 1222333 3 666666665554 33332223333332 124678888765
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.9e-06 Score=80.11 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=53.4
Q ss_pred ceEEEEcCChhHH-HHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--
Q 017997 2 VKICCIGAGYVGG-PTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (362)
+||+|||+|.||. .++..|.+. ++++|+ ++|+++++.+++.+. -++...+|++++++
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~------------------~g~~~~~~~~~ll~~~ 88 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEAE-PLTEVTAIASRRWDRAKRFTER------------------FGGEPVEGYPALLERD 88 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHC-TTEEEEEEEESSHHHHHHHHHH------------------HCSEEEESHHHHHTCT
T ss_pred eEEEEEcCcHHHHHHHHHHHHhC-CCeEEEEEEcCCHHHHHHHHHH------------------cCCCCcCCHHHHhcCC
Confidence 5899999999998 788888875 478876 679999988876541 01334478888775
Q ss_pred CCcEEEEeccCC
Q 017997 78 EADIVFVSVNTP 89 (362)
Q Consensus 78 ~aDvVii~vptp 89 (362)
+.|+|++|+|+.
T Consensus 89 ~~D~V~i~tp~~ 100 (350)
T 3rc1_A 89 DVDAVYVPLPAV 100 (350)
T ss_dssp TCSEEEECCCGG
T ss_pred CCCEEEECCCcH
Confidence 589999998753
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.30 E-value=6e-06 Score=76.34 Aligned_cols=117 Identities=22% Similarity=0.299 Sum_probs=73.1
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCC--eEEEEeC--CHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSI--EVAVVDI--SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~--~V~~~d~--~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
|||+|+| +|.+|.+++..|+.. |+ ++.++|+ ++++++.... .+.+... .....+++.+..+++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~--~~~~el~L~Di~~~~~~~~~~~~--------dl~~~~~--~~~~~~v~~~~~~a~ 68 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALR--DIADEVVFVDIPDKEDDTVGQAA--------DTNHGIA--YDSNTRVRQGGYEDT 68 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCCSEEEEECCGGGHHHHHHHHH--------HHHHHHT--TTCCCEEEECCGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCCCEEEEEcCCCChhhHHHHHH--------HHHHHHh--hCCCcEEEeCCHHHh
Confidence 7999999 999999999999987 54 7999999 8877653221 1111110 012233332335569
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHH
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d-----~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~ 136 (362)
+++|+||++.+.|... |. + ..| ...+++.++.+.++ .++.+|++ +|.|.++.-.
T Consensus 69 ~~aDvVi~~ag~~~~~-g~--~-r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv-~SNPv~~~~~ 127 (303)
T 1o6z_A 69 AGSDVVVITAGIPRQP-GQ--T-RIDLAGDNAPIMEDIQSSLDEH-NDDYISLT-TSNPVDLLNR 127 (303)
T ss_dssp TTCSEEEECCCCCCCT-TC--C-HHHHHHHHHHHHHHHHHHHHTT-CSCCEEEE-CCSSHHHHHH
T ss_pred CCCCEEEEcCCCCCCC-CC--C-HHHHHHHHHHHHHHHHHHHHHH-CCCcEEEE-eCChHHHHHH
Confidence 9999999998876432 10 0 111 13445555666665 45666655 6888876543
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.9e-06 Score=84.03 Aligned_cols=98 Identities=11% Similarity=0.058 Sum_probs=72.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHH-HHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRI-NAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~-~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|+|||+|.||..+|..+... |.+|++||+++.+. +....+ +.. .+++++++.+|
T Consensus 258 ktVgIIG~G~IG~~vA~~l~~~--G~~Viv~d~~~~~~~~a~~~g--------------------~~~-~~l~ell~~aD 314 (479)
T 1v8b_A 258 KIVVICGYGDVGKGCASSMKGL--GARVYITEIDPICAIQAVMEG--------------------FNV-VTLDEIVDKGD 314 (479)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCHHHHHHHHTTT--------------------CEE-CCHHHHTTTCS
T ss_pred CEEEEEeeCHHHHHHHHHHHhC--cCEEEEEeCChhhHHHHHHcC--------------------CEe-cCHHHHHhcCC
Confidence 5899999999999999999988 99999999999875 333221 232 46788899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc-cHHHHHH
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK-TAEAIEK 139 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g-t~~~l~~ 139 (362)
+|++++.++. -.+ +...+.++++.+|++.+..++. ..+.+.+
T Consensus 315 iVi~~~~t~~---------lI~--------~~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 315 FFITCTGNVD---------VIK--------LEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp EEEECCSSSS---------SBC--------HHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred EEEECCChhh---------hcC--------HHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 9999964431 111 2344668999999998887663 4555544
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.2e-06 Score=78.99 Aligned_cols=68 Identities=25% Similarity=0.246 Sum_probs=51.5
Q ss_pred ceEEEEcCChhHHHH-HHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--
Q 017997 2 VKICCIGAGYVGGPT-MAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~l-A~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (362)
|||+|||+|.||..+ +..|.+. +++++ ++|+++++.+.+.+.. +.....+|++++++
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~--~~~~vav~d~~~~~~~~~~~~~-----------------g~~~~~~~~~~~l~~~ 61 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRAT--GGEVVSMMSTSAERGAAYATEN-----------------GIGKSVTSVEELVGDP 61 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHT--TCEEEEEECSCHHHHHHHHHHT-----------------TCSCCBSCHHHHHTCT
T ss_pred CeEEEEcccHHHHHhhhHHhhcC--CCeEEEEECCCHHHHHHHHHHc-----------------CCCcccCCHHHHhcCC
Confidence 699999999999998 7777774 88876 7899999988765420 11123567777665
Q ss_pred CCcEEEEeccC
Q 017997 78 EADIVFVSVNT 88 (362)
Q Consensus 78 ~aDvVii~vpt 88 (362)
++|+|++|+|+
T Consensus 62 ~~D~V~i~tp~ 72 (332)
T 2glx_A 62 DVDAVYVSTTN 72 (332)
T ss_dssp TCCEEEECSCG
T ss_pred CCCEEEEeCCh
Confidence 59999999874
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.6e-06 Score=80.73 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=53.2
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--
Q 017997 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (362)
+||+|||+|.||.. ++..|.+. ++.+|+ ++|+++++.+.+.+.. +.....+|++++++
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~~-----------------~~~~~~~~~~~ll~~~ 67 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQM-QDIRIVAACDSDLERARRVHRFI-----------------SDIPVLDNVPAMLNQV 67 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTC-TTEEEEEEECSSHHHHGGGGGTS-----------------CSCCEESSHHHHHHHS
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-CCcEEEEEEcCCHHHHHHHHHhc-----------------CCCcccCCHHHHhcCC
Confidence 48999999999985 78888765 477876 7799999988776531 12345688888776
Q ss_pred CCcEEEEeccC
Q 017997 78 EADIVFVSVNT 88 (362)
Q Consensus 78 ~aDvVii~vpt 88 (362)
+.|+|++|+|+
T Consensus 68 ~vD~V~i~tp~ 78 (359)
T 3m2t_A 68 PLDAVVMAGPP 78 (359)
T ss_dssp CCSEEEECSCH
T ss_pred CCCEEEEcCCc
Confidence 45999999874
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.5e-06 Score=82.33 Aligned_cols=115 Identities=16% Similarity=0.170 Sum_probs=71.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCC-----hHHHHhhhcCC-CEEEecCHHhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPG-----LDGVVKQCRGK-NLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~-----l~~~~~~~~~~-~l~~t~d~~~a 75 (362)
.||+|||+|.+|..+|..+... |.+|+++|+++++.+.+.+-+..+.+.. ...+.+..... ......+++++
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~ 262 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRL--GAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDA 262 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHH
Confidence 4899999999999999999888 8999999999999888775222111100 00000000000 00002346677
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCc
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~ 130 (362)
++++|+||.|+..|... .+.+ +.+++.+.++++.+||+.|.-+
T Consensus 263 l~~aDIVI~tv~iPg~~-------ap~L-----vt~emv~~MkpGsVIVDvA~d~ 305 (381)
T 3p2y_A 263 ITKFDIVITTALVPGRP-------APRL-----VTAAAATGMQPGSVVVDLAGET 305 (381)
T ss_dssp HTTCSEEEECCCCTTSC-------CCCC-----BCHHHHHTSCTTCEEEETTGGG
T ss_pred HhcCCEEEECCCCCCcc-------ccee-----ecHHHHhcCCCCcEEEEEeCCC
Confidence 89999999997554321 1211 1245667789999999865433
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-06 Score=82.94 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=71.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCE-E-E--------ecC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNL-F-F--------STD 71 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l-~-~--------t~d 71 (362)
.||+|||+|.+|..+|..+... |.+|+++|+++++.+.+.+-...+.+....+.-.....+.. + . ..+
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~ 268 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRL--GAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAAL 268 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhH
Confidence 4899999999999999999888 89999999999988877653222111100000000000000 0 0 124
Q ss_pred HHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 72 ~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
++++++++|+||.|+..|... .+.+ +.+++.+.++++.+||+.|.
T Consensus 269 l~e~l~~aDVVI~tvlipg~~-------ap~L-----vt~emv~~Mk~GsVIVDvA~ 313 (405)
T 4dio_A 269 VAEHIAKQDIVITTALIPGRP-------APRL-----VTREMLDSMKPGSVVVDLAV 313 (405)
T ss_dssp HHHHHHTCSEEEECCCCSSSC-------CCCC-----BCHHHHTTSCTTCEEEETTG
T ss_pred HHHHhcCCCEEEECCcCCCCC-------CCEE-----ecHHHHhcCCCCCEEEEEeC
Confidence 677789999999997555322 2221 13466778899999998654
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.26 E-value=2.1e-06 Score=79.84 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=50.6
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|.||.. ++..|.+. ++++++ ++|+++++.+.+.+.. ++.+++++++...++
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~-~~~~lvav~d~~~~~~~~~~~~~------------------g~~~~~~~~~l~~~~ 66 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAA-SDWTLQGAWSPTRAKALPICESW------------------RIPYADSLSSLAASC 66 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-SSEEEEEEECSSCTTHHHHHHHH------------------TCCBCSSHHHHHTTC
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-CCeEEEEEECCCHHHHHHHHHHc------------------CCCccCcHHHhhcCC
Confidence 58999999999996 88878754 377876 8899998887665410 112456666544689
Q ss_pred cEEEEeccCC
Q 017997 80 DIVFVSVNTP 89 (362)
Q Consensus 80 DvVii~vptp 89 (362)
|+|++|+|+.
T Consensus 67 D~V~i~tp~~ 76 (319)
T 1tlt_A 67 DAVFVHSSTA 76 (319)
T ss_dssp SEEEECSCTT
T ss_pred CEEEEeCCch
Confidence 9999998753
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-06 Score=81.84 Aligned_cols=98 Identities=12% Similarity=0.072 Sum_probs=71.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.+|..++..|++..+..+|.+|||++++.+++.+. +.. ..-.+. .+++++++ ++|+
T Consensus 126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~------------~~~-~~~~~~-~~~~~e~v-~aDv 190 (322)
T 1omo_A 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSY------------CED-RGISAS-VQPAEEAS-RCDV 190 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHH------------HHH-TTCCEE-ECCHHHHT-SSSE
T ss_pred CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHH------------HHh-cCceEE-ECCHHHHh-CCCE
Confidence 58999999999999999998743367999999999999887642 000 001245 67888888 9999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|++|+|+... -+. ...+++++.|+..++..|+.
T Consensus 191 Vi~aTp~~~p----------v~~---------~~~l~~G~~V~~ig~~~p~~ 223 (322)
T 1omo_A 191 LVTTTPSRKP----------VVK---------AEWVEEGTHINAIGADGPGK 223 (322)
T ss_dssp EEECCCCSSC----------CBC---------GGGCCTTCEEEECSCCSTTC
T ss_pred EEEeeCCCCc----------eec---------HHHcCCCeEEEECCCCCCCc
Confidence 9999875321 110 14578899998887776664
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.9e-06 Score=73.58 Aligned_cols=41 Identities=10% Similarity=0.115 Sum_probs=38.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|||.|+|+|.+|..+|..|.+. |++|+++|+|+++++.+.+
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~l~~ 41 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSR--KYGVVIINKDRELCEEFAK 41 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHH
Confidence 7999999999999999999998 9999999999999998764
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.9e-06 Score=84.39 Aligned_cols=90 Identities=16% Similarity=0.075 Sum_probs=68.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHH-HHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRI-NAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~-~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|+|||+|.||..+|..+... |.+|++||+++.+. +....| ... .+++++++.+|
T Consensus 278 ktVgIIG~G~IG~~vA~~l~~~--G~~V~v~d~~~~~~~~a~~~G--------------------~~~-~~l~ell~~aD 334 (494)
T 3d64_A 278 KIAVVAGYGDVGKGCAQSLRGL--GATVWVTEIDPICALQAAMEG--------------------YRV-VTMEYAADKAD 334 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSCHHHHHHHHTTT--------------------CEE-CCHHHHTTTCS
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCChHhHHHHHHcC--------------------CEe-CCHHHHHhcCC
Confidence 5899999999999999999877 99999999998764 222211 232 36788899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPV 131 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~ 131 (362)
+|++++.++. -.+ +...+.++++.+|++.+..++
T Consensus 335 iVi~~~~t~~---------lI~--------~~~l~~MK~gAilINvgrg~v 368 (494)
T 3d64_A 335 IFVTATGNYH---------VIN--------HDHMKAMRHNAIVCNIGHFDS 368 (494)
T ss_dssp EEEECSSSSC---------SBC--------HHHHHHCCTTEEEEECSSSSC
T ss_pred EEEECCCccc---------ccC--------HHHHhhCCCCcEEEEcCCCcc
Confidence 9999985432 111 234556899999999888655
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-06 Score=82.64 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=49.5
Q ss_pred CceEEEEcCChhHHHHHHH-HHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 1 MVKICCIGAGYVGGPTMAV-IALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~-la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
|+||+|||+|.||..+... +....++++|+ ++|+++++.+...+ .......+|+++.+++
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~------------------~~~~~~~~~~~~ll~~ 63 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPI------------------YSHIHFTSDLDEVLND 63 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGG------------------GTTCEEESCTHHHHTC
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHh------------------cCCCceECCHHHHhcC
Confidence 4699999999999864333 43333578877 77998776532221 1235677889887765
Q ss_pred --CcEEEEeccCC
Q 017997 79 --ADIVFVSVNTP 89 (362)
Q Consensus 79 --aDvVii~vptp 89 (362)
.|+|++|+|+.
T Consensus 64 ~~~D~V~i~tp~~ 76 (345)
T 3f4l_A 64 PDVKLVVVCTHAD 76 (345)
T ss_dssp TTEEEEEECSCGG
T ss_pred CCCCEEEEcCChH
Confidence 89999998753
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.25 E-value=8.4e-06 Score=77.17 Aligned_cols=73 Identities=18% Similarity=0.295 Sum_probs=54.0
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V-~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (362)
+|||+|||+|.||..++..|.+. +++++ .++|+++++.+.+.+... + .......+|++++++
T Consensus 6 ~~~vgiiG~G~ig~~~~~~l~~~-~~~~lv~v~d~~~~~~~~~a~~~~-~-------------~~~~~~~~~~~~ll~~~ 70 (362)
T 1ydw_A 6 QIRIGVMGCADIARKVSRAIHLA-PNATISGVASRSLEKAKAFATANN-Y-------------PESTKIHGSYESLLEDP 70 (362)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHHTT-C-------------CTTCEEESSHHHHHHCT
T ss_pred ceEEEEECchHHHHHHHHHHhhC-CCcEEEEEEcCCHHHHHHHHHHhC-C-------------CCCCeeeCCHHHHhcCC
Confidence 36999999999999999988875 36666 578999998877654210 0 002356678888775
Q ss_pred CCcEEEEeccC
Q 017997 78 EADIVFVSVNT 88 (362)
Q Consensus 78 ~aDvVii~vpt 88 (362)
++|+|++|+|+
T Consensus 71 ~~D~V~i~tp~ 81 (362)
T 1ydw_A 71 EIDALYVPLPT 81 (362)
T ss_dssp TCCEEEECCCG
T ss_pred CCCEEEEcCCh
Confidence 59999999874
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.5e-06 Score=72.59 Aligned_cols=72 Identities=10% Similarity=0.140 Sum_probs=51.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCC-C-CCChHHHHhhhcCCCEEEecCHHhh--hc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPI-Y-EPGLDGVVKQCRGKNLFFSTDVEKH--VS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~-~-e~~l~~~~~~~~~~~l~~t~d~~~a--~~ 77 (362)
++|.|+|+|.||..+|..|.+.+ |++|+++|+++++++.+.+..... . +..-. +.+.++ +.
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~-g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~--------------~~l~~~~~~~ 104 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARY-GKISLGIEIREEAAQQHRSEGRNVISGDATDP--------------DFWERILDTG 104 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHH-CSCEEEEESCHHHHHHHHHTTCCEEECCTTCH--------------HHHHTBCSCC
T ss_pred CcEEEECCCHHHHHHHHHHHhcc-CCeEEEEECCHHHHHHHHHCCCCEEEcCCCCH--------------HHHHhccCCC
Confidence 48999999999999999998741 589999999999998887532211 1 10000 012232 56
Q ss_pred CCcEEEEeccC
Q 017997 78 EADIVFVSVNT 88 (362)
Q Consensus 78 ~aDvVii~vpt 88 (362)
++|+||+|+|.
T Consensus 105 ~ad~vi~~~~~ 115 (183)
T 3c85_A 105 HVKLVLLAMPH 115 (183)
T ss_dssp CCCEEEECCSS
T ss_pred CCCEEEEeCCC
Confidence 89999999874
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.9e-06 Score=78.33 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=52.7
Q ss_pred CceEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc-
Q 017997 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (362)
|+||||||+|.||.. ++..+.+. ++.+|+ ++|+++++.+++.+.. +.-++.+|+++.++
T Consensus 23 mirigiIG~G~ig~~~~~~~~~~~-~~~~lvav~d~~~~~a~~~a~~~-----------------g~~~~y~d~~ell~~ 84 (350)
T 4had_A 23 MLRFGIISTAKIGRDNVVPAIQDA-ENCVVTAIASRDLTRAREMADRF-----------------SVPHAFGSYEEMLAS 84 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHC-SSEEEEEEECSSHHHHHHHHHHH-----------------TCSEEESSHHHHHHC
T ss_pred ccEEEEEcChHHHHHHHHHHHHhC-CCeEEEEEECCCHHHHHHHHHHc-----------------CCCeeeCCHHHHhcC
Confidence 679999999999975 45566554 477876 5799999988876520 11256788988774
Q ss_pred -CCcEEEEeccCC
Q 017997 78 -EADIVFVSVNTP 89 (362)
Q Consensus 78 -~aDvVii~vptp 89 (362)
+.|+|+||+|++
T Consensus 85 ~~iDaV~I~tP~~ 97 (350)
T 4had_A 85 DVIDAVYIPLPTS 97 (350)
T ss_dssp SSCSEEEECSCGG
T ss_pred CCCCEEEEeCCCc
Confidence 589999998754
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.8e-06 Score=79.45 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=50.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--C
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (362)
+||+|||+|.||..++..|.+. ++.+++ ++|+++++.+.+.+.. +.-...+|+++.++ +
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~-~~~~~~av~d~~~~~~~~~a~~~-----------------~~~~~~~~~~~ll~~~~ 67 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLA-GNGEVVAVSSRTLESAQAFANKY-----------------HLPKAYDKLEDMLADES 67 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHH-CSEEEEEEECSCSSTTCC---CC-----------------CCSCEESCHHHHHTCTT
T ss_pred eEEEEEechHHHHHHHHHHHhC-CCcEEEEEEcCCHHHHHHHHHHc-----------------CCCcccCCHHHHhcCCC
Confidence 5899999999999999998876 256655 6699987765544310 11135678888777 7
Q ss_pred CcEEEEeccCC
Q 017997 79 ADIVFVSVNTP 89 (362)
Q Consensus 79 aDvVii~vptp 89 (362)
+|+|++|+|+.
T Consensus 68 ~D~V~i~tp~~ 78 (329)
T 3evn_A 68 IDVIYVATINQ 78 (329)
T ss_dssp CCEEEECSCGG
T ss_pred CCEEEECCCcH
Confidence 99999998753
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.21 E-value=7.9e-06 Score=77.48 Aligned_cols=67 Identities=21% Similarity=0.362 Sum_probs=50.0
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--
Q 017997 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (362)
+||+|||+|.||.. .+..+.+. ++++|+ ++|++++++++-. +...+.+|+++.++
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~--------------------~~~~~~~~~~~ll~~~ 66 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSV-PGLNLAFVASRDEEKVKRDL--------------------PDVTVIASPEAAVQHP 66 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-TTEEEEEEECSCHHHHHHHC--------------------TTSEEESCHHHHHTCT
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-CCeEEEEEEcCCHHHHHhhC--------------------CCCcEECCHHHHhcCC
Confidence 58999999999987 56666554 478875 6799998765211 23466788998876
Q ss_pred CCcEEEEeccCC
Q 017997 78 EADIVFVSVNTP 89 (362)
Q Consensus 78 ~aDvVii~vptp 89 (362)
+.|+|++|+|+.
T Consensus 67 ~~D~V~i~tp~~ 78 (364)
T 3e82_A 67 DVDLVVIASPNA 78 (364)
T ss_dssp TCSEEEECSCGG
T ss_pred CCCEEEEeCChH
Confidence 789999998753
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-05 Score=74.76 Aligned_cols=106 Identities=14% Similarity=0.217 Sum_probs=72.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+++||||+|.+|..+|..+..- |.+|++||+.+... ..+ ....+ .++++.+++||+
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~f--g~~v~~~d~~~~~~--~~~-------------------~~~~~-~~l~ell~~sDi 197 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAF--GMKVLCYDVVKRED--LKE-------------------KGCVY-TSLDELLKESDV 197 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCHH--HHH-------------------TTCEE-CCHHHHHHHCSE
T ss_pred cEEEEECcchHHHHHHHhhccc--CceeeecCCccchh--hhh-------------------cCcee-cCHHHHHhhCCE
Confidence 4799999999999999988877 99999999864321 111 11222 467888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|.+++|-.....+ -.| +.....++++.++|+.|=-+.=..+.|.+.|++.
T Consensus 198 vslh~Plt~~T~~-----li~--------~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g 247 (334)
T 3kb6_A 198 ISLHVPYTKETHH-----MIN--------EERISLMKDGVYLINTARGKVVDTDALYRAYQRG 247 (334)
T ss_dssp EEECCCCCTTTTT-----CBC--------HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred EEEcCCCChhhcc-----CcC--------HHHHhhcCCCeEEEecCccccccHHHHHHHHHhC
Confidence 9999874322211 222 2334568999999987653333345677777653
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.19 E-value=2e-06 Score=79.89 Aligned_cols=98 Identities=15% Similarity=0.110 Sum_probs=69.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|||+|.+|..++..|....+..+|.+||++ +.+++.+. ++......+... +++++++++|+
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~------------l~~~~g~~~~~~-~~~eav~~aDI 186 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILER------------IGRRCGVPARMA-APADIAAQADI 186 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHH------------HHHHHTSCEEEC-CHHHHHHHCSE
T ss_pred cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHH------------HHHhcCCeEEEe-CHHHHHhhCCE
Confidence 4799999999999999999875446799999999 54444321 000001234556 88999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|+.|+|.+. +-+ . .+.++++++|+..++..|+.
T Consensus 187 Vi~aT~s~~----------pvl-------~--~~~l~~G~~V~~vGs~~p~~ 219 (313)
T 3hdj_A 187 VVTATRSTT----------PLF-------A--GQALRAGAFVGAIGSSLPHT 219 (313)
T ss_dssp EEECCCCSS----------CSS-------C--GGGCCTTCEEEECCCSSTTC
T ss_pred EEEccCCCC----------ccc-------C--HHHcCCCcEEEECCCCCCch
Confidence 999987531 111 1 24678999998877776664
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.3e-06 Score=77.19 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=51.6
Q ss_pred ceEEEEcCChhHH-HHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--
Q 017997 2 VKICCIGAGYVGG-PTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~la~~~~G~~V-~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (362)
+||+|||+|.+|. .++..|... +++| .++|+++++.+.+.+.. +...+.+|+++.++
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~--~~~lvav~d~~~~~~~~~a~~~-----------------~~~~~~~~~~~ll~~~ 65 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDA--GAELAGVFESDSDNRAKFTSLF-----------------PSVPFAASAEQLITDA 65 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHT--TCEEEEEECSCTTSCHHHHHHS-----------------TTCCBCSCHHHHHTCT
T ss_pred cEEEEECCChHHHHHhhhhhcCC--CcEEEEEeCCCHHHHHHHHHhc-----------------CCCcccCCHHHHhhCC
Confidence 6999999999996 577777655 8885 57899998877765421 12345678888775
Q ss_pred CCcEEEEeccCC
Q 017997 78 EADIVFVSVNTP 89 (362)
Q Consensus 78 ~aDvVii~vptp 89 (362)
+.|+|+||+|+.
T Consensus 66 ~~D~V~i~tp~~ 77 (336)
T 2p2s_A 66 SIDLIACAVIPC 77 (336)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEEeCChh
Confidence 689999998753
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.8e-05 Score=73.31 Aligned_cols=115 Identities=20% Similarity=0.282 Sum_probs=72.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHH----HHHcCCCCCCCCChHHHHhhhcCCCEEE--ecCHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALK-CPSIEVAVVDISVSRIN----AWNSDQLPIYEPGLDGVVKQCRGKNLFF--STDVE 73 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~-~~G~~V~~~d~~~~~~~----~l~~~~~~~~e~~l~~~~~~~~~~~l~~--t~d~~ 73 (362)
|||+||| +|+||.++|..|+.. ....++.++|+++ +++ .++.. +. .-.++. +++..
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~--~~-------------~~~v~~~~~~~~~ 64 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHI--PT-------------AVKIKGFSGEDAT 64 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTS--CS-------------SEEEEEECSSCCH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCC--CC-------------CceEEEecCCCcH
Confidence 7999999 899999999999874 2246899999986 322 22221 00 012332 12444
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHH
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l 137 (362)
+++++||+||++.+.|..+ |+ ++ ..+...+++..+.+.++. ++.++++- |.|..+.-.+
T Consensus 65 ~~~~~aDivii~ag~~rkp-G~--~R~dll~~N~~I~~~i~~~i~~~~-p~a~vlvv-tNPvd~~t~~ 127 (312)
T 3hhp_A 65 PALEGADVVLISAGVARKP-GM--DRSDLFNVNAGIVKNLVQQVAKTC-PKACIGII-TNPVNTTVAI 127 (312)
T ss_dssp HHHTTCSEEEECCSCSCCT-TC--CHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEEC-SSCHHHHHHH
T ss_pred HHhCCCCEEEEeCCCCCCC-CC--CHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEe-cCcchhHHHH
Confidence 5699999999999887543 21 11 113345566677777775 55555543 5677765443
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=4.8e-06 Score=81.76 Aligned_cols=90 Identities=18% Similarity=0.130 Sum_probs=67.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|+|+|.||..+|..+... |++|+++|+++.+.+...+. + ... .+++++++++|+
T Consensus 275 ktV~IiG~G~IG~~~A~~lka~--Ga~Viv~d~~~~~~~~A~~~------------------G-a~~-~~l~e~l~~aDv 332 (494)
T 3ce6_A 275 KKVLICGYGDVGKGCAEAMKGQ--GARVSVTEIDPINALQAMME------------------G-FDV-VTVEEAIGDADI 332 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT------------------T-CEE-CCHHHHGGGCSE
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc------------------C-CEE-ecHHHHHhCCCE
Confidence 4899999999999999999888 89999999999887655431 1 222 356677889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~ 130 (362)
||.|++++.. .+ .+..+.++++.+|++.+...
T Consensus 333 Vi~atgt~~~---------i~--------~~~l~~mk~ggilvnvG~~~ 364 (494)
T 3ce6_A 333 VVTATGNKDI---------IM--------LEHIKAMKDHAILGNIGHFD 364 (494)
T ss_dssp EEECSSSSCS---------BC--------HHHHHHSCTTCEEEECSSSG
T ss_pred EEECCCCHHH---------HH--------HHHHHhcCCCcEEEEeCCCC
Confidence 9999875421 11 13345578999998877654
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.13 E-value=8.5e-06 Score=76.23 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=52.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC-CCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC-PSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~-~G~~-V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (362)
+||+|||+|.||..++..|.+.. .+++ |.++|+++++.+.+.+.. +.-+..+|+++.++
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~-----------------~~~~~~~~~~~ll~~~ 65 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKH-----------------DIPKAYGSYEELAKDP 65 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHH-----------------TCSCEESSHHHHHHCT
T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHc-----------------CCCcccCCHHHHhcCC
Confidence 69999999999999998887651 0234 556799999988776420 11135678888776
Q ss_pred CCcEEEEeccCC
Q 017997 78 EADIVFVSVNTP 89 (362)
Q Consensus 78 ~aDvVii~vptp 89 (362)
+.|+|++|+|+.
T Consensus 66 ~vD~V~i~tp~~ 77 (334)
T 3ohs_X 66 NVEVAYVGTQHP 77 (334)
T ss_dssp TCCEEEECCCGG
T ss_pred CCCEEEECCCcH
Confidence 699999998753
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-05 Score=77.22 Aligned_cols=90 Identities=19% Similarity=0.136 Sum_probs=66.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|+|+|.+|..+|..|... |.+|+++|+++.+....... .... .+++++++.+|+
T Consensus 212 ktVgIiG~G~IG~~vA~~Lka~--Ga~Viv~D~~p~~a~~A~~~-------------------G~~~-~sL~eal~~ADV 269 (436)
T 3h9u_A 212 KTACVCGYGDVGKGCAAALRGF--GARVVVTEVDPINALQAAME-------------------GYQV-LLVEDVVEEAHI 269 (436)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCEE-CCHHHHTTTCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCChhhhHHHHHh-------------------CCee-cCHHHHHhhCCE
Confidence 4899999999999999999988 99999999998766443321 1232 378888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~ 130 (362)
|+++.++..- .+ ....+.++++.+|++.+-.+
T Consensus 270 Vilt~gt~~i---------I~--------~e~l~~MK~gAIVINvgRg~ 301 (436)
T 3h9u_A 270 FVTTTGNDDI---------IT--------SEHFPRMRDDAIVCNIGHFD 301 (436)
T ss_dssp EEECSSCSCS---------BC--------TTTGGGCCTTEEEEECSSSG
T ss_pred EEECCCCcCc---------cC--------HHHHhhcCCCcEEEEeCCCC
Confidence 9987654321 11 12345678999999877543
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.09 E-value=7.7e-06 Score=75.39 Aligned_cols=104 Identities=15% Similarity=0.178 Sum_probs=69.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|.|+|+|.+|.+++..|++. |. +|++++|++++.+.+.+..... .+.....+++.+++.++|
T Consensus 142 ~~vlVlGaGg~g~aia~~L~~~--G~~~V~v~nR~~~ka~~la~~~~~~-------------~~~~~~~~~~~~~~~~aD 206 (297)
T 2egg_A 142 KRILVIGAGGGARGIYFSLLST--AAERIDMANRTVEKAERLVREGDER-------------RSAYFSLAEAETRLAEYD 206 (297)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCSEEEEECSSHHHHHHHHHHSCSS-------------SCCEECHHHHHHTGGGCS
T ss_pred CEEEEECcHHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHhhhc-------------cCceeeHHHHHhhhccCC
Confidence 5799999999999999999998 87 9999999999988876421000 001111124455678999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
+||.|+|.+...+. ..+.+. ...++++.+|++.++.|..|
T Consensus 207 ivIn~t~~~~~~~~----~~~~i~---------~~~l~~~~~v~D~~y~P~~T 246 (297)
T 2egg_A 207 IIINTTSVGMHPRV----EVQPLS---------LERLRPGVIVSDIIYNPLET 246 (297)
T ss_dssp EEEECSCTTCSSCC----SCCSSC---------CTTCCTTCEEEECCCSSSSC
T ss_pred EEEECCCCCCCCCC----CCCCCC---------HHHcCCCCEEEEcCCCCCCC
Confidence 99999886542110 000000 13467888999988865544
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.6e-05 Score=73.57 Aligned_cols=88 Identities=17% Similarity=0.344 Sum_probs=54.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+||+|||+|.||..++..|.+. ++++++ ++|+++++.+. .|. + ....+++.+ ..++|
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~-~~~elvav~d~~~~~~~~--~g~-~-----------------~~~~~~l~~-~~~~D 67 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREA-PDFEIAGIVRRNPAEVPF--ELQ-P-----------------FRVVSDIEQ-LESVD 67 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-TTEEEEEEECC---------CCT-T-----------------SCEESSGGG-SSSCC
T ss_pred CEEEEECChHHHHHHHHHHhcC-CCCEEEEEEcCCHHHHHH--cCC-C-----------------cCCHHHHHh-CCCCC
Confidence 5899999999999999999874 478887 68999887654 110 0 112344444 37899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv 129 (362)
+|++|+|+.. -.+.+...++.+.-|++++.+
T Consensus 68 vViiatp~~~------------------h~~~~~~al~aG~~Vi~ekP~ 98 (304)
T 3bio_A 68 VALVCSPSRE------------------VERTALEILKKGICTADSFDI 98 (304)
T ss_dssp EEEECSCHHH------------------HHHHHHHHHTTTCEEEECCCC
T ss_pred EEEECCCchh------------------hHHHHHHHHHcCCeEEECCCC
Confidence 9999977421 123333445667777776543
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=98.04 E-value=2.9e-05 Score=73.36 Aligned_cols=67 Identities=10% Similarity=0.221 Sum_probs=49.3
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--
Q 017997 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (362)
+||+|||+|.||.. .+..+.+. ++++|+ ++|++++++.+-. +...+.+|+++.++
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~--------------------~~~~~~~~~~~ll~~~ 64 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVL-DEYQISKIMTSRTEEVKRDF--------------------PDAEVVHELEEITNDP 64 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-TTEEEEEEECSCHHHHHHHC--------------------TTSEEESSTHHHHTCT
T ss_pred ceEEEEccCHHHHHHHHHHHhhC-CCeEEEEEEcCCHHHHHhhC--------------------CCCceECCHHHHhcCC
Confidence 58999999999986 56666554 578875 6699987743211 12466788888776
Q ss_pred CCcEEEEeccCC
Q 017997 78 EADIVFVSVNTP 89 (362)
Q Consensus 78 ~aDvVii~vptp 89 (362)
+.|+|++|+|+.
T Consensus 65 ~vD~V~i~tp~~ 76 (358)
T 3gdo_A 65 AIELVIVTTPSG 76 (358)
T ss_dssp TCCEEEECSCTT
T ss_pred CCCEEEEcCCcH
Confidence 789999998764
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.5e-05 Score=73.61 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=49.9
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC-
Q 017997 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE- 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~- 78 (362)
+||+|||+|.||.. .+..+.+. ++.+|+ ++|+++++.++ . .....+.+|+++.+++
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~-~~~~l~av~d~~~~~~~~--~------------------~~~~~~~~~~~~ll~~~ 66 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGT-PGLELAGVSSSDASKVHA--D------------------WPAIPVVSDPQMLFNDP 66 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-TTEEEEEEECSCHHHHHT--T------------------CSSCCEESCHHHHHHCS
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-CCcEEEEEECCCHHHHHh--h------------------CCCCceECCHHHHhcCC
Confidence 58999999999997 66666654 477876 67999988751 1 0124567888887764
Q ss_pred -CcEEEEeccCC
Q 017997 79 -ADIVFVSVNTP 89 (362)
Q Consensus 79 -aDvVii~vptp 89 (362)
.|+|++|+|+.
T Consensus 67 ~vD~V~i~tp~~ 78 (352)
T 3kux_A 67 SIDLIVIPTPND 78 (352)
T ss_dssp SCCEEEECSCTT
T ss_pred CCCEEEEeCChH
Confidence 99999998754
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.7e-06 Score=75.13 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=50.0
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~-~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
||||+|+| +|+||..++..+.+. +++++++ +|++..... |. ... ++.. ....+..++|+++++++
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~-~~~eLv~~~d~~~~~~~----G~-d~g-----el~g--~~~gv~v~~dl~~ll~~ 73 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAA-PDATLVGALDRTGSPQL----GQ-DAG-----AFLG--KQTGVALTDDIERVCAE 73 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHC-TTEEEEEEBCCTTCTTT----TS-BTT-----TTTT--CCCSCBCBCCHHHHHHH
T ss_pred ccEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEEecCcccc----cc-cHH-----HHhC--CCCCceecCCHHHHhcC
Confidence 57999999 899999999988876 4788777 588643210 10 000 0000 01135667899888889
Q ss_pred CcEEEEecc
Q 017997 79 ADIVFVSVN 87 (362)
Q Consensus 79 aDvVii~vp 87 (362)
+|+||.+++
T Consensus 74 ~DVVIDfT~ 82 (272)
T 4f3y_A 74 ADYLIDFTL 82 (272)
T ss_dssp CSEEEECSC
T ss_pred CCEEEEcCC
Confidence 999999964
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.2e-05 Score=76.95 Aligned_cols=70 Identities=9% Similarity=0.158 Sum_probs=53.8
Q ss_pred CceEEEEcCC-hhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc-
Q 017997 1 MVKICCIGAG-YVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (362)
Q Consensus 1 ~mkI~VIGlG-~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (362)
+|||+|||+| .||..++..|.+. ++.+++ ++|+++++.+.+.+. -++...+|++++++
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~------------------~g~~~~~~~~ell~~ 62 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHH-PDAQIVAACDPNEDVRERFGKE------------------YGIPVFATLAEMMQH 62 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHC-TTEEEEEEECSCHHHHHHHHHH------------------HTCCEESSHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhC-CCeEEEEEEeCCHHHHHHHHHH------------------cCCCeECCHHHHHcC
Confidence 3699999999 9999999988875 367765 679999988776541 02345678888776
Q ss_pred -CCcEEEEeccCC
Q 017997 78 -EADIVFVSVNTP 89 (362)
Q Consensus 78 -~aDvVii~vptp 89 (362)
+.|+|++|+|+.
T Consensus 63 ~~vD~V~i~tp~~ 75 (387)
T 3moi_A 63 VQMDAVYIASPHQ 75 (387)
T ss_dssp SCCSEEEECSCGG
T ss_pred CCCCEEEEcCCcH
Confidence 599999998753
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.01 E-value=2.9e-05 Score=72.85 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=54.1
Q ss_pred ceEEEEcCC-hhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--
Q 017997 2 VKICCIGAG-YVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (362)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~la~~~~G~~V-~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (362)
+||+|||+| .+|...+..|.+..++.++ .++|+++++.+++.+.. +...+.+|+++.++
T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~-----------------~~~~~~~~~~~ll~~~ 81 (340)
T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV-----------------GNPAVFDSYEELLESG 81 (340)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH-----------------SSCEEESCHHHHHHSS
T ss_pred eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHh-----------------CCCcccCCHHHHhcCC
Confidence 589999999 8999999888765246776 57799999988765420 11256788988775
Q ss_pred CCcEEEEeccCC
Q 017997 78 EADIVFVSVNTP 89 (362)
Q Consensus 78 ~aDvVii~vptp 89 (362)
+.|+|+||+|+.
T Consensus 82 ~vD~V~i~tp~~ 93 (340)
T 1zh8_A 82 LVDAVDLTLPVE 93 (340)
T ss_dssp CCSEEEECCCGG
T ss_pred CCCEEEEeCCch
Confidence 689999998753
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=4.1e-05 Score=74.50 Aligned_cols=75 Identities=23% Similarity=0.232 Sum_probs=53.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec----CHHhhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST----DVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V-~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~----d~~~a~ 76 (362)
+||+|||+|.||...+..|.+. ++.+| .++|+++++.+.+.+. +.+.........+ |+++++
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~-~~~~lvav~d~~~~~~~~~a~~------------~~~~g~~~~~~~~~~~~~~~~ll 87 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARR-DDVEIVAFADPDPYMVGRAQEI------------LKKNGKKPAKVFGNGNDDYKNML 87 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-TTEEEEEEECSCHHHHHHHHHH------------HHHTTCCCCEEECSSTTTHHHHT
T ss_pred ceEEEEecCHHHHHHHHHHHhC-CCcEEEEEEeCCHHHHHHHHHH------------HHhcCCCCCceeccCCCCHHHHh
Confidence 5899999999999999888764 47776 4779999998876531 0000001134455 888877
Q ss_pred c--CCcEEEEeccCC
Q 017997 77 S--EADIVFVSVNTP 89 (362)
Q Consensus 77 ~--~aDvVii~vptp 89 (362)
+ +.|+|++|+|+.
T Consensus 88 ~~~~vD~V~i~tp~~ 102 (444)
T 2ixa_A 88 KDKNIDAVFVSSPWE 102 (444)
T ss_dssp TCTTCCEEEECCCGG
T ss_pred cCCCCCEEEEcCCcH
Confidence 6 589999998753
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.2e-05 Score=78.05 Aligned_cols=73 Identities=11% Similarity=0.167 Sum_probs=52.8
Q ss_pred ceEEEEcCChhHH-HHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCC-CCCCCCChHHHHhhhcCCCEEEecCHHhhhc-
Q 017997 2 VKICCIGAGYVGG-PTMAVIALKCPSIEV-AVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~la~~~~G~~V-~~~d~~~~~~~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (362)
+||+|||+|.||. .++..|.+. +++++ .++|+++++.+.+.+.. .+ ...+...+|+++.++
T Consensus 84 irigiIG~G~~g~~~~~~~l~~~-~~~~lvav~d~~~~~~~~~a~~~g~~--------------~~~~~~~~~~~~ll~~ 148 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAGC-QHSRIEALVSGNAEKAKIVAAEYGVD--------------PRKIYDYSNFDKIAKD 148 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-SSEEEEEEECSCHHHHHHHHHHTTCC--------------GGGEECSSSGGGGGGC
T ss_pred eEEEEECCcHHHHHHHHHHHhhC-CCcEEEEEEcCCHHHHHHHHHHhCCC--------------cccccccCCHHHHhcC
Confidence 6899999999997 888888764 36675 57899999888765421 00 001345677888776
Q ss_pred -CCcEEEEeccCC
Q 017997 78 -EADIVFVSVNTP 89 (362)
Q Consensus 78 -~aDvVii~vptp 89 (362)
++|+|++|+|+.
T Consensus 149 ~~vD~V~iatp~~ 161 (433)
T 1h6d_A 149 PKIDAVYIILPNS 161 (433)
T ss_dssp TTCCEEEECSCGG
T ss_pred CCCCEEEEcCCch
Confidence 799999998753
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.99 E-value=8.3e-06 Score=77.38 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=52.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||.|+|+|+||..+|..|++ .++|+++|++.++++++++....+.- .+.-..++.+.++++|+
T Consensus 17 mkilvlGaG~vG~~~~~~L~~---~~~v~~~~~~~~~~~~~~~~~~~~~~-------------d~~d~~~l~~~~~~~Dv 80 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKD---EFDVYIGDVNNENLEKVKEFATPLKV-------------DASNFDKLVEVMKEFEL 80 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTT---TSEEEEEESCHHHHHHHTTTSEEEEC-------------CTTCHHHHHHHHTTCSE
T ss_pred cEEEEECCCHHHHHHHHHHhc---CCCeEEEEcCHHHHHHHhccCCcEEE-------------ecCCHHHHHHHHhCCCE
Confidence 899999999999999999876 48999999999999988653211100 00001124456789999
Q ss_pred EEEeccC
Q 017997 82 VFVSVNT 88 (362)
Q Consensus 82 Vii~vpt 88 (362)
||.|+|.
T Consensus 81 Vi~~~p~ 87 (365)
T 3abi_A 81 VIGALPG 87 (365)
T ss_dssp EEECCCG
T ss_pred EEEecCC
Confidence 9999874
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=1.2e-05 Score=75.99 Aligned_cols=111 Identities=13% Similarity=0.095 Sum_probs=72.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc-CCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-EAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-~aD 80 (362)
++|+|+|+|.||..+|..|.+. |++|+++|+++++++.+.+.. + .++. +.++.+. +||
T Consensus 174 ktV~V~G~G~VG~~~A~~L~~~--GakVvv~D~~~~~l~~~a~~~-----------------g-a~~v-~~~~ll~~~~D 232 (364)
T 1leh_A 174 LAVSVQGLGNVAKALCKKLNTE--GAKLVVTDVNKAAVSAAVAEE-----------------G-ADAV-APNAIYGVTCD 232 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHH-----------------C-CEEC-CGGGTTTCCCS
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHc-----------------C-CEEE-ChHHHhccCCc
Confidence 5899999999999999999999 999999999999887665410 1 1222 2233333 899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
+++.|.... ..+.. .+ +.+ +..+|.+++..|-+.+...+.+.+.+ +.+.|..+
T Consensus 233 Ivip~a~~~----------~I~~~----~~----~~l--g~~iV~e~An~p~t~~ea~~~L~~~G------i~~~Pd~~ 285 (364)
T 1leh_A 233 IFAPCALGA----------VLNDF----TI----PQL--KAKVIAGSADNQLKDPRHGKYLHELG------IVYAPDYV 285 (364)
T ss_dssp EEEECSCSC----------CBSTT----HH----HHC--CCSEECCSCSCCBSSHHHHHHHHHHT------CEECCHHH
T ss_pred EeeccchHH----------HhCHH----HH----HhC--CCcEEEeCCCCCcccHHHHHHHHhCC------CEEeccee
Confidence 999885321 12211 12 223 23345566666666655666677652 35677654
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.7e-05 Score=76.10 Aligned_cols=89 Identities=18% Similarity=0.087 Sum_probs=64.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+....... .+.+ .+++++++.+|+
T Consensus 248 KTVgVIG~G~IGr~vA~~lraf--Ga~Viv~d~dp~~a~~A~~~-------------------G~~v-v~LeElL~~ADI 305 (464)
T 3n58_A 248 KVAVVCGYGDVGKGSAQSLAGA--GARVKVTEVDPICALQAAMD-------------------GFEV-VTLDDAASTADI 305 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHT-------------------TCEE-CCHHHHGGGCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEEeCCcchhhHHHhc-------------------Ccee-ccHHHHHhhCCE
Confidence 4799999999999999999887 89999999998764332211 1233 357888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCC
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv 129 (362)
|+.+++++. ..+ ++....++++.+|++.+-.
T Consensus 306 Vv~atgt~~---------lI~--------~e~l~~MK~GAILINvGRg 336 (464)
T 3n58_A 306 VVTTTGNKD---------VIT--------IDHMRKMKDMCIVGNIGHF 336 (464)
T ss_dssp EEECCSSSS---------SBC--------HHHHHHSCTTEEEEECSSS
T ss_pred EEECCCCcc---------ccC--------HHHHhcCCCCeEEEEcCCC
Confidence 999866431 111 2334557899999986654
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=7e-05 Score=73.39 Aligned_cols=78 Identities=19% Similarity=0.205 Sum_probs=52.7
Q ss_pred ceEEEEcCChhHHHHH--HHHHHcC----CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHh
Q 017997 2 VKICCIGAGYVGGPTM--AVIALKC----PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEK 74 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA--~~la~~~----~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~ 74 (362)
|||+|||+|.+|.+.. ..++... .+.+++++|+++++++.... ....+.+.. ..-++..|+|.++
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~--------~~~~~~~~~~~~~~i~~t~d~~e 72 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYI--------LARKYVEELNSPVKVVKTESLDE 72 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHH--------HHHHHHHHHTCCCEEEEESCHHH
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHH--------HHHHHHHHcCCCeEEEEeCCHHH
Confidence 7999999999986532 2233221 13479999999998875332 011122221 1235788999999
Q ss_pred hhcCCcEEEEecc
Q 017997 75 HVSEADIVFVSVN 87 (362)
Q Consensus 75 a~~~aDvVii~vp 87 (362)
|+++||+||+++.
T Consensus 73 Al~gAD~Vi~~~g 85 (477)
T 3u95_A 73 AIEGADFIINTAY 85 (477)
T ss_dssp HHTTCSEEEECCC
T ss_pred HhCCCCEEEECcc
Confidence 9999999999973
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.96 E-value=6.5e-05 Score=71.05 Aligned_cols=68 Identities=4% Similarity=0.043 Sum_probs=51.0
Q ss_pred ceEEEEcCChhHH-HHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC-
Q 017997 2 VKICCIGAGYVGG-PTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE- 78 (362)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~- 78 (362)
+||+|||+|.+|. .++..+... +.+|+ ++|+++++.+.+.+.. +...+.+|+++.+++
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~--~~~lvav~d~~~~~a~~~a~~~-----------------~~~~~~~~~~~ll~~~ 87 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRA--GARLAGFHEKDDALAAEFSAVY-----------------ADARRIATAEEILEDE 87 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHT--TCEEEEEECSCHHHHHHHHHHS-----------------SSCCEESCHHHHHTCT
T ss_pred cEEEEECcCHHHHHHHHHHhhcC--CcEEEEEEcCCHHHHHHHHHHc-----------------CCCcccCCHHHHhcCC
Confidence 4899999999995 456666654 88855 6799999988776521 223466888887764
Q ss_pred -CcEEEEeccC
Q 017997 79 -ADIVFVSVNT 88 (362)
Q Consensus 79 -aDvVii~vpt 88 (362)
.|+|+||+|+
T Consensus 88 ~vD~V~I~tp~ 98 (361)
T 3u3x_A 88 NIGLIVSAAVS 98 (361)
T ss_dssp TCCEEEECCCH
T ss_pred CCCEEEEeCCh
Confidence 8999999774
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=4.2e-05 Score=73.91 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=57.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHc---CC-CCCC-CCChHHHHhhhcCCCEEEecCHHhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNS---DQ-LPIY-EPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~---~~-~~~~-e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
+||||||+|.||..++..+.+. ++.+|+ ++|+++++.+...+ |. .++. .....++-+....+...+++|+++.
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~-~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeL 102 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARM-QGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLI 102 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS-SSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHH
T ss_pred eEEEEECChHHHHHHHHHHhhC-CCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHH
Confidence 5899999999999999887754 466654 56999999887643 20 0000 0011111111113457788999987
Q ss_pred hc--CCcEEEEeccCC
Q 017997 76 VS--EADIVFVSVNTP 89 (362)
Q Consensus 76 ~~--~aDvVii~vptp 89 (362)
++ +.|+|++|+|.|
T Consensus 103 L~d~dIDaVviaTp~p 118 (446)
T 3upl_A 103 LSNPLIDVIIDATGIP 118 (446)
T ss_dssp HTCTTCCEEEECSCCH
T ss_pred hcCCCCCEEEEcCCCh
Confidence 76 589999998754
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=8.4e-06 Score=77.73 Aligned_cols=97 Identities=22% Similarity=0.313 Sum_probs=67.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHhhhcCCCEEE--ecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFF--STDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~~~ 78 (362)
++|+|+|+|.+|..+|..+... |.+|+++|+++++.+.+.+ ....+ .... ..++.+.+++
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~--Ga~V~~~d~~~~~l~~~~~~~g~~~---------------~~~~~~~~~l~~~l~~ 231 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGM--GATVTVLDINIDKLRQLDAEFCGRI---------------HTRYSSAYELEGAVKR 231 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTTSS---------------EEEECCHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhcCCee---------------EeccCCHHHHHHHHcC
Confidence 4899999999999999999888 8999999999999887754 11110 0000 1234556789
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEee
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~S 127 (362)
+|+||.|++.|... .+.+ ..+...+.++++.+|++.|
T Consensus 232 aDvVi~~~~~p~~~-------t~~l-----i~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 232 ADLVIGAVLVPGAK-------APKL-----VSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CSEEEECCCCTTSC-------CCCC-----BCHHHHTTSCTTCEEEEGG
T ss_pred CCEEEECCCcCCCC-------Ccce-----ecHHHHhcCCCCcEEEEEe
Confidence 99999999766421 1111 1234456678888888765
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=2.2e-05 Score=74.59 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=52.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.||+|||+| +|...+..+.+...+++++ ++|+++++.+++.+. -++...+|+++.+++.|
T Consensus 8 ~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~------------------~gv~~~~~~~~l~~~~D 68 (372)
T 4gmf_A 8 QRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHA------------------FGIPLYTSPEQITGMPD 68 (372)
T ss_dssp EEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHH------------------TTCCEESSGGGCCSCCS
T ss_pred CEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHH------------------hCCCEECCHHHHhcCCC
Confidence 489999999 6987777776642357766 569999998887652 12345678888888999
Q ss_pred EEEEeccCCC
Q 017997 81 IVFVSVNTPT 90 (362)
Q Consensus 81 vVii~vptp~ 90 (362)
+++||+|++.
T Consensus 69 ~v~i~~p~~~ 78 (372)
T 4gmf_A 69 IACIVVRSTV 78 (372)
T ss_dssp EEEECCC--C
T ss_pred EEEEECCCcc
Confidence 9999998765
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.7e-05 Score=73.82 Aligned_cols=64 Identities=20% Similarity=0.499 Sum_probs=47.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V-~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+||+|||+|.||..++..+.+. ++.++ .++|+++++ .+. -.+..++|+++.+.++|
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~-~~~elvav~d~~~~~--~~~--------------------~gv~~~~d~~~ll~~~D 60 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQ-PDMDLVGIFSRRATL--DTK--------------------TPVFDVADVDKHADDVD 60 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-SSEEEEEEEESSSCC--SSS--------------------SCEEEGGGGGGTTTTCS
T ss_pred CEEEEEeecHHHHHHHHHHhcC-CCCEEEEEEcCCHHH--hhc--------------------CCCceeCCHHHHhcCCC
Confidence 6899999999999999988875 35665 577987543 111 02556677777667899
Q ss_pred EEEEeccC
Q 017997 81 IVFVSVNT 88 (362)
Q Consensus 81 vVii~vpt 88 (362)
+|++|+|+
T Consensus 61 vViiatp~ 68 (320)
T 1f06_A 61 VLFLCMGS 68 (320)
T ss_dssp EEEECSCT
T ss_pred EEEEcCCc
Confidence 99999874
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=3.7e-05 Score=73.62 Aligned_cols=89 Identities=19% Similarity=0.150 Sum_probs=64.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|+|+|.+|..+|..+... |.+|+++|+++.+....... + .. ..+++++++.+|+
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~--Ga~Viv~D~dp~ra~~A~~~------------------G-~~-v~~Leeal~~ADI 278 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAM--GSIVYVTEIDPICALQACMD------------------G-FR-LVKLNEVIRQVDI 278 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT------------------T-CE-ECCHHHHTTTCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEEeCChhhhHHHHHc------------------C-CE-eccHHHHHhcCCE
Confidence 4799999999999999999887 89999999998765433221 1 22 2467888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCC
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv 129 (362)
|++|..++. ..+ .+....++++.+|++.+-.
T Consensus 279 Vi~atgt~~---------lI~--------~e~l~~MK~gailINvgrg 309 (435)
T 3gvp_A 279 VITCTGNKN---------VVT--------REHLDRMKNSCIVCNMGHS 309 (435)
T ss_dssp EEECSSCSC---------SBC--------HHHHHHSCTTEEEEECSST
T ss_pred EEECCCCcc---------cCC--------HHHHHhcCCCcEEEEecCC
Confidence 999854331 111 1233557899999886653
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=9e-05 Score=71.37 Aligned_cols=71 Identities=13% Similarity=0.289 Sum_probs=54.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHhhhcCCCEEEecCHHhh-hcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEKH-VSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a-~~~ 78 (362)
|+|.|+|+|.+|..+|..|.+. |++|+++|.|+++++.+++...++. +..-.+. +..+ +.+
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~--g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~--------------L~~agi~~ 68 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSS--GVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDL--------------LESAGAAK 68 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHH--------------HHHTTTTT
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHH--------------HHhcCCCc
Confidence 6799999999999999999998 9999999999999999876433321 1211111 1222 678
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
||+||+|++.
T Consensus 69 A~~viv~~~~ 78 (413)
T 3l9w_A 69 AEVLINAIDD 78 (413)
T ss_dssp CSEEEECCSS
T ss_pred cCEEEECCCC
Confidence 9999999764
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.86 E-value=4.2e-05 Score=72.33 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=48.6
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC-
Q 017997 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE- 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~- 78 (362)
+||+|||+|.||.. .+..+.+. ++.+|+ ++|++++++ .+. -+.....+|+++.+++
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~---~~~-----------------~~~~~~~~~~~~ll~~~ 64 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTN-PHFELYKIVERSKELS---KER-----------------YPQASIVRSFKELTEDP 64 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHC-TTEEEEEEECSSCCGG---GTT-----------------CTTSEEESCSHHHHTCT
T ss_pred eEEEEECCCHHHHHHHHHHHhhC-CCeEEEEEEcCCHHHH---HHh-----------------CCCCceECCHHHHhcCC
Confidence 58999999999997 66666654 478876 668887652 211 1134667888887765
Q ss_pred -CcEEEEeccCC
Q 017997 79 -ADIVFVSVNTP 89 (362)
Q Consensus 79 -aDvVii~vptp 89 (362)
.|+|++|+|+.
T Consensus 65 ~vD~V~i~tp~~ 76 (362)
T 3fhl_A 65 EIDLIVVNTPDN 76 (362)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEEeCChH
Confidence 89999998753
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.86 E-value=2.1e-05 Score=70.64 Aligned_cols=67 Identities=18% Similarity=0.313 Sum_probs=53.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+|.|||+|.||.+++..|++. |. +|++++|++++.+++.+.. + ....++..++++++|+
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~--G~~~I~v~nR~~~ka~~la~~~-----------------~-~~~~~~~~~~~~~aDi 169 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQM--GVKDIWVVNRTIERAKALDFPV-----------------K-IFSLDQLDEVVKKAKS 169 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCCEEEEESCHHHHHTCCSSC-----------------E-EEEGGGHHHHHHTCSE
T ss_pred eEEEECcHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHc-----------------c-cCCHHHHHhhhcCCCE
Confidence 689999999999999999998 87 8999999999988775421 1 1223456666889999
Q ss_pred EEEeccCC
Q 017997 82 VFVSVNTP 89 (362)
Q Consensus 82 Vii~vptp 89 (362)
||.|+|..
T Consensus 170 VInatp~g 177 (253)
T 3u62_A 170 LFNTTSVG 177 (253)
T ss_dssp EEECSSTT
T ss_pred EEECCCCC
Confidence 99998753
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.86 E-value=5.9e-05 Score=72.78 Aligned_cols=72 Identities=13% Similarity=0.190 Sum_probs=51.1
Q ss_pred ceEEEEcCCh---hHHHHHHHHHHcCCCCeEE--EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGY---VGGPTMAVIALKCPSIEVA--VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~---~G~~lA~~la~~~~G~~V~--~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
+||+|||+|. ||...+..+... ++++++ ++|+++++.+++.+.. + ....++.+|+++.+
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~-~~~~lva~v~d~~~~~a~~~a~~~------g---------~~~~~~~~~~~~ll 101 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLD-DHYELVAGALSSTPEKAEASGREL------G---------LDPSRVYSDFKEMA 101 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHT-SCEEEEEEECCSSHHHHHHHHHHH------T---------CCGGGBCSCHHHHH
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHc------C---------CCcccccCCHHHHH
Confidence 4899999998 999888887766 246776 5699999988766420 0 00013457788776
Q ss_pred cC-------CcEEEEeccCC
Q 017997 77 SE-------ADIVFVSVNTP 89 (362)
Q Consensus 77 ~~-------aDvVii~vptp 89 (362)
++ .|+|+||+|+.
T Consensus 102 ~~~~~~~~~vD~V~I~tp~~ 121 (417)
T 3v5n_A 102 IREAKLKNGIEAVAIVTPNH 121 (417)
T ss_dssp HHHHHCTTCCSEEEECSCTT
T ss_pred hcccccCCCCcEEEECCCcH
Confidence 55 89999998864
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=1.6e-05 Score=72.46 Aligned_cols=98 Identities=22% Similarity=0.255 Sum_probs=66.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+++.|+|+|.+|.+++..|++. |. +|++++|++++.+.+.+.. .....++..+++.++|
T Consensus 118 k~vlvlGaGg~g~aia~~L~~~--G~~~v~v~~R~~~~a~~la~~~------------------~~~~~~~~~~~~~~aD 177 (277)
T 3don_A 118 AYILILGAGGASKGIANELYKI--VRPTLTVANRTMSRFNNWSLNI------------------NKINLSHAESHLDEFD 177 (277)
T ss_dssp CCEEEECCSHHHHHHHHHHHTT--CCSCCEEECSCGGGGTTCCSCC------------------EEECHHHHHHTGGGCS
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHhc------------------ccccHhhHHHHhcCCC
Confidence 4799999999999999999998 88 8999999998876654320 1111234555678999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
+||-|+|.....+ .+ ..+ -...++++.+|++.++.|..|
T Consensus 178 iVInaTp~Gm~~~-------~~-----~~l--~~~~l~~~~~V~D~vY~P~~T 216 (277)
T 3don_A 178 IIINTTPAGMNGN-------TD-----SVI--SLNRLASHTLVSDIVYNPYKT 216 (277)
T ss_dssp EEEECCC--------------C-----CSS--CCTTCCSSCEEEESCCSSSSC
T ss_pred EEEECccCCCCCC-------Cc-----CCC--CHHHcCCCCEEEEecCCCCCC
Confidence 9999977532110 00 000 023467889999988876655
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00017 Score=67.62 Aligned_cols=117 Identities=21% Similarity=0.308 Sum_probs=73.5
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCC-C----CeEEEEeCCHH--HHH----HHHcCCCCCCCCChHHHHhhhcCCCEEEec
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCP-S----IEVAVVDISVS--RIN----AWNSDQLPIYEPGLDGVVKQCRGKNLFFST 70 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~-G----~~V~~~d~~~~--~~~----~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (362)
||+|+|+ |.+|.+++..|+.... | .++.++|+++. +++ .|+..-.+. ......++
T Consensus 26 KVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~-------------~~~~~~~~ 92 (345)
T 4h7p_A 26 KVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPL-------------LDKVVVTA 92 (345)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTT-------------EEEEEEES
T ss_pred EEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccC-------------CCcEEEcC
Confidence 9999996 9999999999987510 1 27999999753 222 222211111 12356778
Q ss_pred CHHhhhcCCcEEEEeccCCCCCCCCCCC--CCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 71 DVEKHVSEADIVFVSVNTPTKTQGLGAG--KAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 71 d~~~a~~~aDvVii~vptp~~~~g~~~~--~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
+..+++++||+||++-..|..+ |+... -..+.+.+++..+.|.++..++.+|++- |.|..+.
T Consensus 93 ~~~~a~~~advVvi~aG~prkp-GmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvv-sNPvd~~ 156 (345)
T 4h7p_A 93 DPRVAFDGVAIAIMCGAFPRKA-GMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVV-GNPANTN 156 (345)
T ss_dssp CHHHHTTTCSEEEECCCCCCCT-TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEEC-SSSHHHH
T ss_pred ChHHHhCCCCEEEECCCCCCCC-CCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEe-CCCcchH
Confidence 8888899999999997766433 21100 0112345566667777777777766443 4565543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.84 E-value=8.4e-05 Score=64.38 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=51.6
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||.|.| .|.+|..++..|++. |++|++++|++++.+.+..+ ..+..-+ + ++...+++.++|
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~-~~~~~~D------------~--~d~~~~~~~~~d 63 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNR--GHEVTAIVRNAGKITQTHKD-INILQKD------------I--FDLTLSDLSDQN 63 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCSHHHHHHCSS-SEEEECC------------G--GGCCHHHHTTCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhC--CCEEEEEEcCchhhhhccCC-CeEEecc------------c--cChhhhhhcCCC
Confidence 7999999 599999999999999 99999999999888776421 1110111 1 111114588999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||-|...+
T Consensus 64 ~vi~~ag~~ 72 (221)
T 3ew7_A 64 VVVDAYGIS 72 (221)
T ss_dssp EEEECCCSS
T ss_pred EEEECCcCC
Confidence 999998754
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.82 E-value=3.7e-05 Score=73.71 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=52.3
Q ss_pred ceEEEEcCCh---hHHHHHHHHHHcCCCCeEE--EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGY---VGGPTMAVIALKCPSIEVA--VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~---~G~~lA~~la~~~~G~~V~--~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
+||+|||+|. ||...+..+... ++++++ ++|+++++.+.+.+.. +. ...++.+|+++.+
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~-~~~~lva~v~d~~~~~a~~~a~~~------g~---------~~~~~~~~~~~ll 76 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRD-NTFVLVAGAFDIDPIRGSAFGEQL------GV---------DSERCYADYLSMF 76 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGG-GSEEEEEEECCSSHHHHHHHHHHT------TC---------CGGGBCSSHHHHH
T ss_pred ceEEEEcCCccchhHHHHHHHHhhC-CCeEEEEEEeCCCHHHHHHHHHHh------CC---------CcceeeCCHHHHH
Confidence 4899999999 999998888766 257777 4699999988776421 00 0013457788776
Q ss_pred cC-------CcEEEEeccCC
Q 017997 77 SE-------ADIVFVSVNTP 89 (362)
Q Consensus 77 ~~-------aDvVii~vptp 89 (362)
++ .|+|+||+|+.
T Consensus 77 ~~~~~~~~~vD~V~i~tp~~ 96 (398)
T 3dty_A 77 EQEARRADGIQAVSIATPNG 96 (398)
T ss_dssp HHHTTCTTCCSEEEEESCGG
T ss_pred hcccccCCCCCEEEECCCcH
Confidence 54 99999998754
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.81 E-value=6.3e-05 Score=61.87 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=34.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC-HHHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS-VSRINAWN 43 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~-~~~~~~l~ 43 (362)
++|.|+|+|.+|..++..|.+. |++|+++|++ +++++.+.
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~--g~~V~vid~~~~~~~~~~~ 44 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQR--GQNVTVISNLPEDDIKQLE 44 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCHHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHHC--CCCEEEEECCChHHHHHHH
Confidence 4799999999999999999998 9999999998 56665554
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.8e-05 Score=75.21 Aligned_cols=101 Identities=18% Similarity=0.275 Sum_probs=64.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|+|+|+|.+|..++..+... |++|+++|+++++.+.+.+ ....+. ....-..+.++.++++|
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~~g~~~~-------------~~~~~~~~l~~~~~~~D 231 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGM--GAQVTILDVNHKRLQYLDDVFGGRVI-------------TLTATEANIKKSVQHAD 231 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTTSEE-------------EEECCHHHHHHHHHHCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHhcCceEE-------------EecCCHHHHHHHHhCCC
Confidence 5899999999999999999988 8999999999998887654 211000 00000123455678999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv 129 (362)
+||.|++.+... .+.+ ..+...+.++++.+|++.|..
T Consensus 232 vVi~~~g~~~~~-------~~~l-----i~~~~l~~mk~gg~iV~v~~~ 268 (369)
T 2eez_A 232 LLIGAVLVPGAK-------APKL-----VTRDMLSLMKEGAVIVDVAVD 268 (369)
T ss_dssp EEEECCC--------------CC-----SCHHHHTTSCTTCEEEECC--
T ss_pred EEEECCCCCccc-------cchh-----HHHHHHHhhcCCCEEEEEecC
Confidence 999998854210 0000 123455667888888876643
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.80 E-value=7.7e-05 Score=71.76 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=52.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC-------CCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC-------PSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~-------~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (362)
+||||||+|.||...+..+.+.. .+.+|+ ++|+++++.+++.+.. +...+.+|++
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~-----------------~~~~~y~d~~ 89 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKL-----------------GAEKAYGDWR 89 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHH-----------------TCSEEESSHH
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHc-----------------CCCeEECCHH
Confidence 48999999999998888887641 123554 5699999998876520 1225678898
Q ss_pred hhhc--CCcEEEEeccCC
Q 017997 74 KHVS--EADIVFVSVNTP 89 (362)
Q Consensus 74 ~a~~--~aDvVii~vptp 89 (362)
+.++ +.|+|+||+|+.
T Consensus 90 ~ll~~~~vD~V~I~tp~~ 107 (412)
T 4gqa_A 90 ELVNDPQVDVVDITSPNH 107 (412)
T ss_dssp HHHHCTTCCEEEECSCGG
T ss_pred HHhcCCCCCEEEECCCcH
Confidence 8775 689999998754
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00011 Score=72.12 Aligned_cols=72 Identities=13% Similarity=0.171 Sum_probs=54.3
Q ss_pred ceEEEEcC----ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
+||+|||+ |.||..++..|.+..++++|+ ++|+++++.+.+.+.. + .....+.+|+++++
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~------g---------~~~~~~~~d~~ell 104 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQL------Q---------LKHATGFDSLESFA 104 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHT------T---------CTTCEEESCHHHHH
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHc------C---------CCcceeeCCHHHHh
Confidence 58999999 999999999998742477765 7899999988776421 0 01134678888877
Q ss_pred c--CCcEEEEeccC
Q 017997 77 S--EADIVFVSVNT 88 (362)
Q Consensus 77 ~--~aDvVii~vpt 88 (362)
+ +.|+|+||+|+
T Consensus 105 ~~~~vD~V~I~tp~ 118 (479)
T 2nvw_A 105 QYKDIDMIVVSVKV 118 (479)
T ss_dssp HCTTCSEEEECSCH
T ss_pred cCCCCCEEEEcCCc
Confidence 5 69999999874
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.79 E-value=5.1e-05 Score=71.40 Aligned_cols=70 Identities=16% Similarity=0.340 Sum_probs=46.7
Q ss_pred ceEEEEcCChhHH-HHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC-
Q 017997 2 VKICCIGAGYVGG-PTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE- 78 (362)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~- 78 (362)
+||+|||+|.||. ..+..+.+. ++++|+ ++|++ +.+.+.+. .........+|+++.+++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~-~~~~l~av~d~~--~~~~~a~~---------------~~~~~~~~~~~~~~ll~~~ 64 (349)
T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIR-ETLEVKTIFDLH--VNEKAAAP---------------FKEKGVNFTADLNELLTDP 64 (349)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-TTEEEEEEECTT--CCHHHHHH---------------HHTTTCEEESCTHHHHSCT
T ss_pred eEEEEEccCHHHHHHHHHHHhhC-CCeEEEEEECCC--HHHHHHHh---------------hCCCCCeEECCHHHHhcCC
Confidence 5999999999998 455555543 578876 66877 22222210 001235677888887765
Q ss_pred -CcEEEEeccCC
Q 017997 79 -ADIVFVSVNTP 89 (362)
Q Consensus 79 -aDvVii~vptp 89 (362)
.|+|++|+|+.
T Consensus 65 ~~D~V~i~tp~~ 76 (349)
T 3i23_A 65 EIELITICTPAH 76 (349)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEEeCCcH
Confidence 89999998753
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00012 Score=68.32 Aligned_cols=113 Identities=17% Similarity=0.319 Sum_probs=72.1
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCC--e-----EEEEeCCH--HHHH----HHHcCCCCCCCCChHHHHhhhcCCCEE
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSI--E-----VAVVDISV--SRIN----AWNSDQLPIYEPGLDGVVKQCRGKNLF 67 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~--~-----V~~~d~~~--~~~~----~l~~~~~~~~e~~l~~~~~~~~~~~l~ 67 (362)
|||+|+| +|.+|.++|..|+.. |. + +.++|+++ ++++ .|+....++ ...+.
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~--~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~-------------~~~~~ 68 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNG--SVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-------------LKDVI 68 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTT--TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-------------EEEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhC--CCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcc-------------cCCEE
Confidence 7999999 799999999999987 54 5 99999974 3333 233221121 02355
Q ss_pred EecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 68 FSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 68 ~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d-----~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
.+++..+++++||+||++-..|... |+ + ..| .+.+++..+.+.++..++..+++ -|.|..+.
T Consensus 69 ~~~~~~~~~~daDvVvitAg~prkp-G~--t-R~dll~~N~~i~~~i~~~i~~~~~~~~~viv-vsNPvd~~ 135 (333)
T 5mdh_A 69 ATDKEEIAFKDLDVAILVGSMPRRD-GM--E-RKDLLKANVKIFKCQGAALDKYAKKSVKVIV-VGNPANTN 135 (333)
T ss_dssp EESCHHHHTTTCSEEEECCSCCCCT-TC--C-TTTTHHHHHHHHHHHHHHHHHHSCTTCEEEE-CSSSHHHH
T ss_pred EcCCcHHHhCCCCEEEEeCCCCCCC-CC--C-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE-cCCchHHH
Confidence 6677667799999999987665432 21 1 223 35566667777777655543433 24566554
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00013 Score=70.23 Aligned_cols=116 Identities=17% Similarity=0.136 Sum_probs=70.8
Q ss_pred CceEEEEcCChhHHHH--HHHHHH--cC-CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 1 MVKICCIGAGYVGGPT--MAVIAL--KC-PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~l--A~~la~--~~-~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
+|||+|||+|.+ .+. +..|+. .. ++.+|+++|+++++++.... +...+.... -+++.++|+.++
T Consensus 2 ~~KI~IIGaG~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~---------~~~~~~~~~-~~v~~t~d~~~a 70 (417)
T 1up7_A 2 HMRIAVIGGGSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD---------FVKRLVKDR-FKVLISDTFEGA 70 (417)
T ss_dssp CCEEEEETTTCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH---------HHHHHHTTS-SEEEECSSHHHH
T ss_pred CCEEEEECCCHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHH---------HHHHHhhCC-eEEEEeCCHHHH
Confidence 489999999996 322 223454 32 25789999999998775332 111010101 347777898778
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCC------CCC------------------hHHHHHHHHHHHhhcCCCCEEEEeeCCcc
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGK------AAD------------------LTYWESAARVIADVSKSDKIVVEKSTVPV 131 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~------~~d------------------~~~l~~~~~~i~~~l~~~~iVv~~STv~~ 131 (362)
+++||+||++...+... +. ++ ..+ +..+.+.++.|.++. +.++++ -|.|.
T Consensus 71 l~~AD~Viitagvg~~~-~~--~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin-~TNPv 144 (417)
T 1up7_A 71 VVDAKYVIFQFRPGGLK-GR--ENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVN-FTNPS 144 (417)
T ss_dssp HTTCSEEEECCCTTHHH-HH--HHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEE-CSSSH
T ss_pred hCCCCEEEEcCCCCCCC-cc--chhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEE-eCChH
Confidence 99999999998654211 00 00 011 134677778888887 666655 35666
Q ss_pred cc
Q 017997 132 KT 133 (362)
Q Consensus 132 gt 133 (362)
+.
T Consensus 145 di 146 (417)
T 1up7_A 145 GH 146 (417)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00039 Score=64.34 Aligned_cols=119 Identities=21% Similarity=0.331 Sum_probs=70.4
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeC--CHHHHHH----HHcCCCCCCCCChHHHHhhhcCCCEEEecC-HH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDI--SVSRINA----WNSDQLPIYEPGLDGVVKQCRGKNLFFSTD-VE 73 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~--~~~~~~~----l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d-~~ 73 (362)
|||+|+|+ |.+|.+++..|+..+...++.++|+ ++++++. +.... ++.. ....++.++| ..
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~-~~~~----------~~~~i~~~~d~l~ 69 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL-AGTR----------SDANIYVESDENL 69 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH-TTSC----------CCCEEEEEETTCG
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH-HhcC----------CCeEEEeCCcchH
Confidence 79999999 9999999999998721237999999 8765543 22110 1100 0113444443 46
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCC--CCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGA--GKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~--~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~ 135 (362)
++++++|+||++...|... |... -...+...+++.++.+.++. +.+|++ +|.|..+.-
T Consensus 70 ~al~gaD~Vi~~Ag~~~~~-g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv-~SNPv~~~t 129 (313)
T 1hye_A 70 RIIDESDVVIITSGVPRKE-GMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFV-ITNPVDVMT 129 (313)
T ss_dssp GGGTTCSEEEECCSCCCCT-TCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEE-CSSSHHHHH
T ss_pred HHhCCCCEEEECCCCCCCC-CCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEE-ecCcHHHHH
Confidence 6799999999998765432 1000 00112233455556666665 555544 567776643
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.76 E-value=6.3e-05 Score=73.07 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=54.1
Q ss_pred ceEEEEcC----ChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIGA----GYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~la~~~~G~~V-~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
+||+|||+ |.||..++..|.+..++++| .++|+++++.+.+.+.. + .......+|+++++
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~------g---------~~~~~~~~~~~~ll 85 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRL------K---------LSNATAFPTLESFA 85 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------T---------CTTCEEESSHHHHH
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHc------C---------CCcceeeCCHHHHh
Confidence 58999999 99999999999875247776 57899999988765420 0 01234678888877
Q ss_pred c--CCcEEEEeccC
Q 017997 77 S--EADIVFVSVNT 88 (362)
Q Consensus 77 ~--~aDvVii~vpt 88 (362)
+ +.|+|++|+|+
T Consensus 86 ~~~~vD~V~i~tp~ 99 (438)
T 3btv_A 86 SSSTIDMIVIAIQV 99 (438)
T ss_dssp HCSSCSEEEECSCH
T ss_pred cCCCCCEEEEeCCc
Confidence 5 68999999874
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=8.9e-05 Score=68.67 Aligned_cols=69 Identities=17% Similarity=0.120 Sum_probs=50.0
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh--
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-- 76 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V-~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-- 76 (362)
|+||+|||+ |++|...+..+.+. +.++ .++|+++++. .+.+. .....+.+|+++.+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~--~~~lvav~d~~~~~~-~~~~~-----------------~~~~~~~~~~~~ll~~ 62 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEV--GGVLVASLDPATNVG-LVDSF-----------------FPEAEFFTEPEAFEAY 62 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHT--TCEEEEEECSSCCCG-GGGGT-----------------CTTCEEESCHHHHHHH
T ss_pred ceEEEEECCChHHHHHHHHHHHhC--CCEEEEEEcCCHHHH-HHHhh-----------------CCCCceeCCHHHHHHH
Confidence 689999999 79999999999887 6664 5668887652 12211 12356677777765
Q ss_pred --------cCCcEEEEeccCC
Q 017997 77 --------SEADIVFVSVNTP 89 (362)
Q Consensus 77 --------~~aDvVii~vptp 89 (362)
.+.|+|+||+|+.
T Consensus 63 ~~~l~~~~~~vD~V~I~tP~~ 83 (312)
T 3o9z_A 63 LEDLRDRGEGVDYLSIASPNH 83 (312)
T ss_dssp HHHHHHTTCCCSEEEECSCGG
T ss_pred hhhhcccCCCCcEEEECCCch
Confidence 5799999998753
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0004 Score=60.25 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=52.0
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||.|.|+ |.+|..++..|++. |++|++++|++++.+.+......+..-++ ++...+++.++|
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~~~~~~~~D~--------------~d~~~~~~~~~d 64 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRR--GHEVLAVVRDPQKAADRLGATVATLVKEP--------------LVLTEADLDSVD 64 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHTCTTSEEEECCG--------------GGCCHHHHTTCS
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC--CCEEEEEEecccccccccCCCceEEeccc--------------ccccHhhcccCC
Confidence 79999997 99999999999999 99999999999988876442211111111 110014578999
Q ss_pred EEEEeccC
Q 017997 81 IVFVSVNT 88 (362)
Q Consensus 81 vVii~vpt 88 (362)
+||-+...
T Consensus 65 ~vi~~ag~ 72 (224)
T 3h2s_A 65 AVVDALSV 72 (224)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99999865
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=3.5e-05 Score=70.01 Aligned_cols=73 Identities=10% Similarity=0.140 Sum_probs=47.0
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|+|+ |.||..++..+.+. +|++++ ++|++++... +..--...++. ...+..++|+++++.++
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~-~~~elva~~d~~~~~~~----g~d~~~~~g~~-------~~~v~~~~dl~~~l~~~ 73 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALAL-EGVQLGAALEREGSSLL----GSDAGELAGAG-------KTGVTVQSSLDAVKDDF 73 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-TTEECCCEECCTTCTTC----SCCTTCSSSSS-------CCSCCEESCSTTTTTSC
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCchhhh----hhhHHHHcCCC-------cCCceecCCHHHHhcCC
Confidence 79999998 99999999988765 488887 6787653211 10000000000 11345567887778899
Q ss_pred cEEEEec
Q 017997 80 DIVFVSV 86 (362)
Q Consensus 80 DvVii~v 86 (362)
|+||-++
T Consensus 74 DvVIDft 80 (273)
T 1dih_A 74 DVFIDFT 80 (273)
T ss_dssp SEEEECS
T ss_pred CEEEEcC
Confidence 9999664
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.75 E-value=9e-05 Score=68.84 Aligned_cols=69 Identities=26% Similarity=0.210 Sum_probs=49.6
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh--
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-- 76 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~-V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-- 76 (362)
|+||+|||+ |++|...+..+.+. +.+ |.++|+++++. .+.+. .....+.+|+++.+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~--~~~lvav~d~~~~~~-~~~~~-----------------~~~~~~~~~~~~ll~~ 62 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDT--GNCLVSAYDINDSVG-IIDSI-----------------SPQSEFFTEFEFFLDH 62 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHT--TCEEEEEECSSCCCG-GGGGT-----------------CTTCEEESSHHHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhC--CCEEEEEEcCCHHHH-HHHhh-----------------CCCCcEECCHHHHHHh
Confidence 689999999 79999999999887 665 45668887642 22211 12346667777755
Q ss_pred ---------cCCcEEEEeccCC
Q 017997 77 ---------SEADIVFVSVNTP 89 (362)
Q Consensus 77 ---------~~aDvVii~vptp 89 (362)
.+.|+|+||+|+.
T Consensus 63 ~~~l~~~~~~~vD~V~I~tP~~ 84 (318)
T 3oa2_A 63 ASNLKRDSATALDYVSICSPNY 84 (318)
T ss_dssp HHHHTTSTTTSCCEEEECSCGG
T ss_pred hhhhhhccCCCCcEEEECCCcH
Confidence 5789999998753
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.73 E-value=8.7e-05 Score=67.21 Aligned_cols=69 Identities=9% Similarity=0.066 Sum_probs=51.1
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
||||.|.|+|++|..++..|.++ ||+|++++|++++.+.+......+.. +.+ +|++ +.++|
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~------------~D~---~d~~--~~~~d 65 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQ--GWRIIGTSRNPDQMEAIRASGAEPLL------------WPG---EEPS--LDGVT 65 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGG--TCEEEEEESCGGGHHHHHHTTEEEEE------------SSS---SCCC--CTTCC
T ss_pred cCcEEEECCcHHHHHHHHHHHHC--CCEEEEEEcChhhhhhHhhCCCeEEE------------ecc---cccc--cCCCC
Confidence 47999999999999999999999 99999999999888776542211100 000 1222 67899
Q ss_pred EEEEeccC
Q 017997 81 IVFVSVNT 88 (362)
Q Consensus 81 vVii~vpt 88 (362)
+||-+...
T Consensus 66 ~vi~~a~~ 73 (286)
T 3ius_A 66 HLLISTAP 73 (286)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99998763
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00016 Score=69.52 Aligned_cols=70 Identities=19% Similarity=0.325 Sum_probs=52.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|+|||+|.||..++..+... |. +|+++|+++++.+.+.+.. .......+++.+.+.++|
T Consensus 168 ~~VlIiGaG~iG~~~a~~l~~~--G~~~V~v~~r~~~ra~~la~~~----------------g~~~~~~~~l~~~l~~aD 229 (404)
T 1gpj_A 168 KTVLVVGAGEMGKTVAKSLVDR--GVRAVLVANRTYERAVELARDL----------------GGEAVRFDELVDHLARSD 229 (404)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH--CCSEEEEECSSHHHHHHHHHHH----------------TCEECCGGGHHHHHHTCS
T ss_pred CEEEEEChHHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHc----------------CCceecHHhHHHHhcCCC
Confidence 4799999999999999999988 88 9999999998875554310 000101134556678999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.|+|.+
T Consensus 230 vVi~at~~~ 238 (404)
T 1gpj_A 230 VVVSATAAP 238 (404)
T ss_dssp EEEECCSSS
T ss_pred EEEEccCCC
Confidence 999998754
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=5e-05 Score=72.89 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=36.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
.+|+|+|+|.+|...+..+... |.+|+++|+++++.+.+.+
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~--Ga~V~v~D~~~~~~~~~~~ 213 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS 213 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCGGGHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence 4799999999999999988887 8999999999988877654
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=9.3e-05 Score=64.47 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=50.6
Q ss_pred Cce-EEEEc-CChhHHHHHHHHH-HcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 1 MVK-ICCIG-AGYVGGPTMAVIA-LKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 1 ~mk-I~VIG-lG~~G~~lA~~la-~~~~G~~V~~~d~~~~-~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
||| |.|.| .|.+|..++..|+ +. |++|++++|+++ +++.+.+... +..- ....+.-.++..+++
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~--g~~V~~~~r~~~~~~~~~~~~~~-----~~~~-----~~~D~~d~~~~~~~~ 71 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYT--DMHITLYGRQLKTRIPPEIIDHE-----RVTV-----IEGSFQNPGXLEQAV 71 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHC--CCEEEEEESSHHHHSCHHHHTST-----TEEE-----EECCTTCHHHHHHHH
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcC--CceEEEEecCccccchhhccCCC-----ceEE-----EECCCCCHHHHHHHH
Confidence 566 99999 5999999999999 78 999999999998 7766631100 0000 000111112334567
Q ss_pred cCCcEEEEecc
Q 017997 77 SEADIVFVSVN 87 (362)
Q Consensus 77 ~~aDvVii~vp 87 (362)
+++|+||.+.+
T Consensus 72 ~~~d~vv~~ag 82 (221)
T 3r6d_A 72 TNAEVVFVGAM 82 (221)
T ss_dssp TTCSEEEESCC
T ss_pred cCCCEEEEcCC
Confidence 89999999975
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.64 E-value=8.3e-05 Score=67.78 Aligned_cols=122 Identities=13% Similarity=0.168 Sum_probs=69.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
+||+|+| +|.||..++..+.+. +++++++. |+++... .|. ...++.. .....+.+++|+++++.++
T Consensus 22 irV~V~Ga~GrMGr~i~~~v~~~-~~~eLvg~vd~~~~~~----~G~------d~gel~G-~~~~gv~v~~dl~~ll~~a 89 (288)
T 3ijp_A 22 MRLTVVGANGRMGRELITAIQRR-KDVELCAVLVRKGSSF----VDK------DASILIG-SDFLGVRITDDPESAFSNT 89 (288)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTC-SSEEEEEEBCCTTCTT----TTS------BGGGGTT-CSCCSCBCBSCHHHHTTSC
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCccc----ccc------chHHhhc-cCcCCceeeCCHHHHhcCC
Confidence 6899999 999999999988765 47886655 8764210 010 0001000 0012356778999988999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-CccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
|++|-+++ | ..+.+.+...++.+.-+|+.|| ..+...+++.+..+ ...++++|.+
T Consensus 90 DVvIDFT~-p-----------------~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~L~~aa~------~~~~~~a~N~ 145 (288)
T 3ijp_A 90 EGILDFSQ-P-----------------QASVLYANYAAQKSLIHIIGTTGFSKTEEAQIADFAK------YTTIVKSGNM 145 (288)
T ss_dssp SEEEECSC-H-----------------HHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHHT------TSEEEECSCC
T ss_pred CEEEEcCC-H-----------------HHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhC------cCCEEEECCC
Confidence 99998853 2 2233344444455666666555 22212222322221 2356788876
Q ss_pred c
Q 017997 159 L 159 (362)
Q Consensus 159 ~ 159 (362)
.
T Consensus 146 S 146 (288)
T 3ijp_A 146 S 146 (288)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00015 Score=68.88 Aligned_cols=70 Identities=16% Similarity=0.260 Sum_probs=50.7
Q ss_pred ceEEEEc-CChhHHH-HH----HHHHHcCCCCeE----------EEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCC
Q 017997 2 VKICCIG-AGYVGGP-TM----AVIALKCPSIEV----------AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKN 65 (362)
Q Consensus 2 mkI~VIG-lG~~G~~-lA----~~la~~~~G~~V----------~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~ 65 (362)
+||+||| +|.||.. .+ ..+.+.. +..+ .++|+++++.+.+.+.. +.
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~~-~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~-----------------~~ 68 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQG-GVRLKNGDRIMPDPILVGRSAEKVEALAKRF-----------------NI 68 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHHT-SEECTTSCEEEEEEEEECSSSHHHHHHHHHT-----------------TC
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhcC-ceeecCCcccceeeEEEcCCHHHHHHHHHHh-----------------CC
Confidence 5899999 9999997 66 6666651 3333 38999999988876421 11
Q ss_pred EEEecCHHhhhc--CCcEEEEeccCC
Q 017997 66 LFFSTDVEKHVS--EADIVFVSVNTP 89 (362)
Q Consensus 66 l~~t~d~~~a~~--~aDvVii~vptp 89 (362)
-.+++|+++.++ +.|+|++|+|+.
T Consensus 69 ~~~~~~~~~ll~~~~iD~V~i~tp~~ 94 (383)
T 3oqb_A 69 ARWTTDLDAALADKNDTMFFDAATTQ 94 (383)
T ss_dssp CCEESCHHHHHHCSSCCEEEECSCSS
T ss_pred CcccCCHHHHhcCCCCCEEEECCCch
Confidence 135688888775 489999998754
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=8.4e-05 Score=69.68 Aligned_cols=85 Identities=19% Similarity=0.226 Sum_probs=54.0
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHH-cCCCCCCCC-ChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWN-SDQLPIYEP-GLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~-~d~~~~~~~~l~-~~~~~~~e~-~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
|+||+|+|+|+||..++..|.++ |+.+|++ .|++++....+. ....+.+.. ..++++. ...+..+.+.++..+
T Consensus 1 ~ikVgIiGaG~iG~~~~r~L~~~-p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~---~~~v~v~~~~e~l~~ 76 (340)
T 1b7g_O 1 MVNVAVNGYGTIGKRVADAIIKQ-PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFE---ESGIPVAGTVEDLIK 76 (340)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHH---TTTCCCCCCHHHHHH
T ss_pred CeEEEEEecCHHHHHHHHHHHcC-CCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhc---ccccccccCHhHhhc
Confidence 57999999999999999988865 4667654 477655443332 222333221 2222222 123455567777567
Q ss_pred CCcEEEEeccCC
Q 017997 78 EADIVFVSVNTP 89 (362)
Q Consensus 78 ~aDvVii~vptp 89 (362)
++|+||.|+|..
T Consensus 77 ~vDvV~~aTp~~ 88 (340)
T 1b7g_O 77 TSDIVVDTTPNG 88 (340)
T ss_dssp HCSEEEECCSTT
T ss_pred CCCEEEECCCCc
Confidence 899999997743
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=4.7e-05 Score=71.27 Aligned_cols=85 Identities=12% Similarity=0.181 Sum_probs=52.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHc-CCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~-~d~~~~~~~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
+||+|+|+|+||..++..|.+. |+.++++ .|++++....+.+ .+...+.. +...+.......+.+..|+++.+.++
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~-~~~elvav~d~~~~~~~~~~~~~g~~~~~~-~~~~v~~~~~~~~~v~~d~~~l~~~v 80 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQ-DDMELIGITKTKPDFEAYRAKELGIPVYAA-SEEFIPRFEKEGFEVAGTLNDLLEKV 80 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-TTEEEEEEEESSCSHHHHHHHHTTCCEEES-SGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred cEEEEEeEhHHHHHHHHHHhcC-CCCEEEEEEcCCHHHHHHHHHhcCcccccc-ccccceeccCCceEEcCcHHHhccCC
Confidence 5999999999999999998875 4667654 5787766655443 11111100 00000000011234556788877899
Q ss_pred cEEEEeccC
Q 017997 80 DIVFVSVNT 88 (362)
Q Consensus 80 DvVii~vpt 88 (362)
|+|++|+|.
T Consensus 81 DvV~~aTp~ 89 (334)
T 2czc_A 81 DIIVDATPG 89 (334)
T ss_dssp SEEEECCST
T ss_pred CEEEECCCc
Confidence 999999774
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00021 Score=67.74 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=48.1
Q ss_pred eEEEEcCChhHHHHHHHHHHc------CCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 3 KICCIGAGYVGGPTMAVIALK------CPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~------~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
||||||+|.||...+..+... .++.+|+ ++|+++++.+++.+.. +.-.+.+|+++.
T Consensus 27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~-----------------g~~~~y~d~~el 89 (393)
T 4fb5_A 27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEF-----------------GFEKATADWRAL 89 (393)
T ss_dssp EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHH-----------------TCSEEESCHHHH
T ss_pred cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHh-----------------CCCeecCCHHHH
Confidence 799999999998777665431 1245655 5699999988776420 112567889887
Q ss_pred hc--CCcEEEEeccCC
Q 017997 76 VS--EADIVFVSVNTP 89 (362)
Q Consensus 76 ~~--~aDvVii~vptp 89 (362)
++ +.|+|+||+|+.
T Consensus 90 l~~~~iDaV~IatP~~ 105 (393)
T 4fb5_A 90 IADPEVDVVSVTTPNQ 105 (393)
T ss_dssp HHCTTCCEEEECSCGG
T ss_pred hcCCCCcEEEECCChH
Confidence 75 589999998754
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00016 Score=68.50 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=50.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCC-------Ce-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPS-------IE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G-------~~-V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (362)
||||||+|.||...+..+... |+ .+ |.++|+++++.+++.+.. +.-++.+|+++
T Consensus 8 rvgiIG~G~ig~~h~~~~~~~-~~~~~~~~~~~l~av~d~~~~~a~~~a~~~-----------------g~~~~~~d~~~ 69 (390)
T 4h3v_A 8 GIGLIGYAFMGAAHSQAWRSA-PRFFDLPLHPDLNVLCGRDAEAVRAAAGKL-----------------GWSTTETDWRT 69 (390)
T ss_dssp EEEEECHHHHHHHHHHHHHHH-HHHSCCSSEEEEEEEECSSHHHHHHHHHHH-----------------TCSEEESCHHH
T ss_pred cEEEEcCCHHHHHHHHHHHhC-ccccccccCceEEEEEcCCHHHHHHHHHHc-----------------CCCcccCCHHH
Confidence 799999999999888877654 11 14 456799999998776420 11256788988
Q ss_pred hhc--CCcEEEEeccCC
Q 017997 75 HVS--EADIVFVSVNTP 89 (362)
Q Consensus 75 a~~--~aDvVii~vptp 89 (362)
.++ +.|+|+||+|+.
T Consensus 70 ll~~~~iDaV~I~tP~~ 86 (390)
T 4h3v_A 70 LLERDDVQLVDVCTPGD 86 (390)
T ss_dssp HTTCTTCSEEEECSCGG
T ss_pred HhcCCCCCEEEEeCChH
Confidence 775 589999998754
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00014 Score=65.85 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=65.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.++.|+|+|.+|.+++..|++. |.+|++++|++++.+.+.+- + +... ++++ +.++|+
T Consensus 119 k~vlvlGaGGaaraia~~L~~~--G~~v~V~nRt~~ka~~la~~------------------~-~~~~-~~~~-l~~~Di 175 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKKQ--GLQVSVLNRSSRGLDFFQRL------------------G-CDCF-MEPP-KSAFDL 175 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCTTHHHHHHH------------------T-CEEE-SSCC-SSCCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHC------------------C-CeEe-cHHH-hccCCE
Confidence 4799999999999999999999 89999999999988877520 0 1111 2223 348999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
||-|+|..... .+.+. .+ .+...++++.+|++.+..| .|
T Consensus 176 VInaTp~Gm~~-------~~~l~--~~---~l~~~l~~~~~v~D~vY~P-~T 214 (269)
T 3phh_A 176 IINATSASLHN-------ELPLN--KE---VLKGYFKEGKLAYDLAYGF-LT 214 (269)
T ss_dssp EEECCTTCCCC-------SCSSC--HH---HHHHHHHHCSEEEESCCSS-CC
T ss_pred EEEcccCCCCC-------CCCCC--hH---HHHhhCCCCCEEEEeCCCC-ch
Confidence 99997754321 01111 11 1222345678898888776 44
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=6.1e-05 Score=70.54 Aligned_cols=86 Identities=21% Similarity=0.201 Sum_probs=50.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHc-CCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
|+||+|+|+|+||..+++.|.++ |+++++++ |++++....+.. .....+. .+...+.......+.+..++++.+.+
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~-~~~elvav~d~~~~~~~~~~~~~g~~~~~-~~~~~v~~~~~~~l~v~~~~~~~~~~ 78 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQ-DDMKVIGVSKTRPDFEARMALKKGYDLYV-AIPERVKLFEKAGIEVAGTVDDMLDE 78 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTS-SSEEEEEEEESSCSHHHHHHHHTTCCEEE-SSGGGHHHHHHTTCCCCEEHHHHHHT
T ss_pred CeEEEEEeECHHHHHHHHHHHcC-CCcEEEEEEcCChhHHHHhcCCcchhhcc-ccccceeeecCCceEEcCCHHHHhcC
Confidence 68999999999999999999875 46777654 666544443322 1111111 01110000001224444456666679
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
+|+||.|+|.
T Consensus 79 vDvV~~atp~ 88 (337)
T 1cf2_P 79 ADIVIDCTPE 88 (337)
T ss_dssp CSEEEECCST
T ss_pred CCEEEECCCc
Confidence 9999999764
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00024 Score=66.24 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=45.4
Q ss_pred ceEEEEcCChhHH-HHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC-
Q 017997 2 VKICCIGAGYVGG-PTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE- 78 (362)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~- 78 (362)
+||+|||+|.||. ..+..|.+. ++.+|+ ++|+++++ .++...+|+++.+++
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~-~~~~lvav~d~~~~~-------------------------~g~~~~~~~~~ll~~~ 79 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKN-ANFKLVATASRHGTV-------------------------EGVNSYTTIEAMLDAE 79 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHC-TTEEEEEEECSSCCC-------------------------TTSEEESSHHHHHHHC
T ss_pred ceEEEEecCHHHHHHHHHHHHhC-CCeEEEEEEeCChhh-------------------------cCCCccCCHHHHHhCC
Confidence 5899999999998 688888775 477765 46877431 124567888887654
Q ss_pred --CcEEEEeccC
Q 017997 79 --ADIVFVSVNT 88 (362)
Q Consensus 79 --aDvVii~vpt 88 (362)
.|+|++|+|+
T Consensus 80 ~~vD~V~i~tp~ 91 (330)
T 4ew6_A 80 PSIDAVSLCMPP 91 (330)
T ss_dssp TTCCEEEECSCH
T ss_pred CCCCEEEEeCCc
Confidence 8999999774
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00081 Score=62.55 Aligned_cols=114 Identities=14% Similarity=0.066 Sum_probs=69.7
Q ss_pred CceEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh-
Q 017997 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV- 76 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~la~~~~G~~V~~~d~~~--~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~- 76 (362)
||||.|||+|.+|.+ +|..|.+. |++|+++|.++ ...+.|.+...+ +..-.+++...
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~--G~~V~~~D~~~~~~~~~~L~~~gi~-----------------v~~g~~~~~l~~ 64 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEA--GFEVSGCDAKMYPPMSTQLEALGID-----------------VYEGFDAAQLDE 64 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHT--TCEEEEEESSCCTTHHHHHHHTTCE-----------------EEESCCGGGGGS
T ss_pred CcEEEEEEECHHHHHHHHHHHHhC--CCEEEEEcCCCCcHHHHHHHhCCCE-----------------EECCCCHHHcCC
Confidence 689999999999996 88889898 99999999864 234445432111 22223444423
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH----------HHHhh-cCCCCEEEEeeCCccccHHH-HHHHHHhc
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------VIADV-SKSDKIVVEKSTVPVKTAEA-IEKILTHN 144 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~----------~i~~~-l~~~~iVv~~STv~~gt~~~-l~~~l~~~ 144 (362)
.++|+||++-.-|.+ .| .+..+.+ -+... .+...+|-++.|..-.||.. +..+|++.
T Consensus 65 ~~~d~vV~Spgi~~~--------~p---~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~ 133 (326)
T 3eag_A 65 FKADVYVIGNVAKRG--------MD---VVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA 133 (326)
T ss_dssp CCCSEEEECTTCCTT--------CH---HHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCcCCC--------CH---HHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 479999987443322 12 2333322 12332 33446777777776666654 56777664
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00016 Score=70.63 Aligned_cols=41 Identities=27% Similarity=0.449 Sum_probs=39.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|||-|+|+|.+|..+|..|.+. ||+|+++|.|+++++.+.+
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~--~~~v~vId~d~~~~~~~~~ 44 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGE--NNDITIVDKDGDRLRELQD 44 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCST--TEEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHH
Confidence 8999999999999999999988 9999999999999998875
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00019 Score=68.41 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=35.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
.+|+|+|+|.+|...+..+... |.+|+++|+++++.+.+.+
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~--Ga~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVES 213 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 4799999999999999988887 8899999999888776654
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00014 Score=59.09 Aligned_cols=98 Identities=10% Similarity=0.007 Sum_probs=63.8
Q ss_pred ceEEEEcC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHH-HHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVSRI-NAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~la~~~~G~~V~~~d~~~~~~-~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
.+|+|||+ |.+|..++.+|.+. ||+ +|++|+.+. +.+ ..+.+..+++++.
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~--G~~--v~~vnp~~~~~~i---------------------~G~~~~~sl~el~ 68 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQ--GYR--VLPVNPRFQGEEL---------------------FGEEAVASLLDLK 68 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT--TCE--EEEECGGGTTSEE---------------------TTEECBSSGGGCC
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHC--CCE--EEEeCCCcccCcC---------------------CCEEecCCHHHCC
Confidence 47999999 89999999999998 897 666666531 111 1356667777756
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
+..|++++++|.+ .+.++++++.+. ....+++..++. .+++.+..++.
T Consensus 69 ~~vDlavi~vp~~---------------~~~~v~~~~~~~-gi~~i~~~~g~~----~~~~~~~a~~~ 116 (140)
T 1iuk_A 69 EPVDILDVFRPPS---------------ALMDHLPEVLAL-RPGLVWLQSGIR----HPEFEKALKEA 116 (140)
T ss_dssp SCCSEEEECSCHH---------------HHTTTHHHHHHH-CCSCEEECTTCC----CHHHHHHHHHT
T ss_pred CCCCEEEEEeCHH---------------HHHHHHHHHHHc-CCCEEEEcCCcC----HHHHHHHHHHc
Confidence 6899999999842 234455555543 234555532222 35565555554
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00077 Score=62.70 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=52.7
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCC-------eEEEEeCCH--HHHH----HHHcCCCCCCCCChHHHHhhhcCCCEE
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDISV--SRIN----AWNSDQLPIYEPGLDGVVKQCRGKNLF 67 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~-------~V~~~d~~~--~~~~----~l~~~~~~~~e~~l~~~~~~~~~~~l~ 67 (362)
|||.|+|. |++|.+++..|+.. |+ +|+++|+++ ++.+ .+.....++ .+.++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~--g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~-------------~~di~ 69 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAG--EMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPL-------------LAGLE 69 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT--TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-------------EEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccc-------------cCCeE
Confidence 79999996 99999999999987 75 899999974 2222 222211111 02355
Q ss_pred EecCHHhhhcCCcEEEEeccCCC
Q 017997 68 FSTDVEKHVSEADIVFVSVNTPT 90 (362)
Q Consensus 68 ~t~d~~~a~~~aDvVii~vptp~ 90 (362)
.+++..++++++|+||.+...+.
T Consensus 70 ~~~~~~~a~~~~D~Vih~Ag~~~ 92 (327)
T 1y7t_A 70 ATDDPKVAFKDADYALLVGAAPR 92 (327)
T ss_dssp EESCHHHHTTTCSEEEECCCCCC
T ss_pred eccChHHHhCCCCEEEECCCcCC
Confidence 66777778999999999876553
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00023 Score=67.34 Aligned_cols=99 Identities=20% Similarity=0.326 Sum_probs=66.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCE-EEe---cCHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNL-FFS---TDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l-~~t---~d~~~a~~ 77 (362)
.+|.|+|+|.+|...+..+... |.+|+++|+++++.+.+.+-.. ..+ ... .+..+.+.
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~--Ga~V~v~dr~~~r~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 229 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFG----------------SRVELLYSNSAEIETAVA 229 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG----------------GGSEEEECCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhhC----------------ceeEeeeCCHHHHHHHHc
Confidence 4799999999999999999988 8899999999999887754100 011 111 23445577
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~ 130 (362)
++|+||-|++.|... .+.+ ..+...+.++++.+|++.+..+
T Consensus 230 ~~DvVI~~~~~~~~~-------~~~l-----i~~~~~~~~~~g~~ivdv~~~~ 270 (361)
T 1pjc_A 230 EADLLIGAVLVPGRR-------APIL-----VPASLVEQMRTGSVIVDVAVDQ 270 (361)
T ss_dssp TCSEEEECCCCTTSS-------CCCC-----BCHHHHTTSCTTCEEEETTCTT
T ss_pred CCCEEEECCCcCCCC-------CCee-----cCHHHHhhCCCCCEEEEEecCC
Confidence 899999998765321 1110 0123345677888888755443
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.46 E-value=8.3e-05 Score=65.67 Aligned_cols=68 Identities=15% Similarity=0.096 Sum_probs=49.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecC---HHhh-hc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTD---VEKH-VS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d---~~~a-~~ 77 (362)
++|.|+|+|.+|..+|..|.+. |+ |+++|+++++++.+..+...+. +. .++ +.++ +.
T Consensus 10 ~~viI~G~G~~G~~la~~L~~~--g~-v~vid~~~~~~~~~~~~~~~i~-------------gd---~~~~~~l~~a~i~ 70 (234)
T 2aef_A 10 RHVVICGWSESTLECLRELRGS--EV-FVLAEDENVRKKVLRSGANFVH-------------GD---PTRVSDLEKANVR 70 (234)
T ss_dssp CEEEEESCCHHHHHHHHHSTTS--EE-EEEESCGGGHHHHHHTTCEEEE-------------SC---TTCHHHHHHTTCT
T ss_pred CEEEEECCChHHHHHHHHHHhC--Ce-EEEEECCHHHHHHHhcCCeEEE-------------cC---CCCHHHHHhcCcc
Confidence 5899999999999999999988 89 9999999999887763211111 00 012 2222 67
Q ss_pred CCcEEEEeccC
Q 017997 78 EADIVFVSVNT 88 (362)
Q Consensus 78 ~aDvVii~vpt 88 (362)
++|.||++++.
T Consensus 71 ~ad~vi~~~~~ 81 (234)
T 2aef_A 71 GARAVIVDLES 81 (234)
T ss_dssp TCSEEEECCSC
T ss_pred hhcEEEEcCCC
Confidence 99999999763
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00014 Score=67.28 Aligned_cols=70 Identities=23% Similarity=0.275 Sum_probs=45.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeE-EEEeCCHHH-HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh---
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV--- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V-~~~d~~~~~-~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~--- 76 (362)
+||+|||+|++|..++..+.++.++.++ .++|+++++ ...+.+. .+....+++.++.+
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~-----------------~g~~~~~~~~e~ll~~~ 67 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQR-----------------MGVTTTYAGVEGLIKLP 67 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHH-----------------TTCCEESSHHHHHHHSG
T ss_pred CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHH-----------------cCCCcccCCHHHHHhcc
Confidence 5899999999999999998763346654 467998776 4444321 01112234445433
Q ss_pred --cCCcEEEEeccC
Q 017997 77 --SEADIVFVSVNT 88 (362)
Q Consensus 77 --~~aDvVii~vpt 88 (362)
.+.|+||+|+|+
T Consensus 68 ~~~~iDvV~~atp~ 81 (312)
T 1nvm_B 68 EFADIDFVFDATSA 81 (312)
T ss_dssp GGGGEEEEEECSCH
T ss_pred CCCCCcEEEECCCh
Confidence 458999999773
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00033 Score=61.58 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=54.4
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCC-CCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQL-PIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~-~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|+|.|.|+ |.+|..++..|++. |++|++++|++++.+.+.+... .+.. ..+. .+..+++.++
T Consensus 22 ~~ilVtGatG~iG~~l~~~L~~~--G~~V~~~~R~~~~~~~~~~~~~~~~~~------------~Dl~--~~~~~~~~~~ 85 (236)
T 3e8x_A 22 MRVLVVGANGKVARYLLSELKNK--GHEPVAMVRNEEQGPELRERGASDIVV------------ANLE--EDFSHAFASI 85 (236)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHTTCSEEEE------------CCTT--SCCGGGGTTC
T ss_pred CeEEEECCCChHHHHHHHHHHhC--CCeEEEEECChHHHHHHHhCCCceEEE------------cccH--HHHHHHHcCC
Confidence 78999997 99999999999999 9999999999998887765322 1111 1111 4455668899
Q ss_pred cEEEEeccC
Q 017997 80 DIVFVSVNT 88 (362)
Q Consensus 80 DvVii~vpt 88 (362)
|+||-+...
T Consensus 86 D~vi~~ag~ 94 (236)
T 3e8x_A 86 DAVVFAAGS 94 (236)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999764
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.45 E-value=5.6e-05 Score=66.01 Aligned_cols=73 Identities=25% Similarity=0.296 Sum_probs=50.0
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||+|.|.| .|++|..++..|++. |++|++++|++++.+.+..+ ..+. ...+.-..+..++++++
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~-~~~~------------~~Dl~d~~~~~~~~~~~ 68 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNR--GFEVTAVVRHPEKIKIENEH-LKVK------------KADVSSLDEVCEVCKGA 68 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTT--TCEEEEECSCGGGCCCCCTT-EEEE------------CCCTTCHHHHHHHHTTC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEEcCcccchhccCc-eEEE------------EecCCCHHHHHHHhcCC
Confidence 57999999 599999999999999 99999999997764322110 0000 01111112344567899
Q ss_pred cEEEEeccC
Q 017997 80 DIVFVSVNT 88 (362)
Q Consensus 80 DvVii~vpt 88 (362)
|+||-+...
T Consensus 69 d~vi~~a~~ 77 (227)
T 3dhn_A 69 DAVISAFNP 77 (227)
T ss_dssp SEEEECCCC
T ss_pred CEEEEeCcC
Confidence 999999764
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00039 Score=56.75 Aligned_cols=97 Identities=10% Similarity=-0.010 Sum_probs=62.5
Q ss_pred ceEEEEcC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
.+|+|||+ |.+|..++..|.+. ||+ +|++|+.. +.+ ..+.+..++++...
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~--G~~--v~~Vnp~~-~~i---------------------~G~~~y~sl~~l~~ 76 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEH--GYD--VYPVNPKY-EEV---------------------LGRKCYPSVLDIPD 76 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT--TCE--EEEECTTC-SEE---------------------TTEECBSSGGGCSS
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHC--CCE--EEEECCCC-CeE---------------------CCeeccCCHHHcCC
Confidence 47999999 79999999999998 898 45555542 111 13566677777666
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
..|++++|+|.+ .+.++++++.+. ..+.+++ .+.. ..+++.+.+++.
T Consensus 77 ~vDlvvi~vp~~---------------~~~~vv~~~~~~-gi~~i~~-~~g~---~~~~l~~~a~~~ 123 (144)
T 2d59_A 77 KIEVVDLFVKPK---------------LTMEYVEQAIKK-GAKVVWF-QYNT---YNREASKKADEA 123 (144)
T ss_dssp CCSEEEECSCHH---------------HHHHHHHHHHHH-TCSEEEE-CTTC---CCHHHHHHHHHT
T ss_pred CCCEEEEEeCHH---------------HHHHHHHHHHHc-CCCEEEE-CCCc---hHHHHHHHHHHc
Confidence 899999998742 346666666554 2334443 3222 135565555554
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00037 Score=67.82 Aligned_cols=75 Identities=16% Similarity=0.266 Sum_probs=51.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|.|+|+|.+|..++..|++. |++|+++|+++++.+.+.+..... .. + ...+.-.++..++++++|+
T Consensus 4 k~VlViGaG~iG~~ia~~L~~~--G~~V~v~~R~~~~a~~la~~~~~~-----~~-~----~~Dv~d~~~l~~~l~~~Dv 71 (450)
T 1ff9_A 4 KSVLMLGSGFVTRPTLDVLTDS--GIKVTVACRTLESAKKLSAGVQHS-----TP-I----SLDVNDDAALDAEVAKHDL 71 (450)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT--TCEEEEEESSHHHHHHTTTTCTTE-----EE-E----ECCTTCHHHHHHHHTTSSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--cCEEEEEECCHHHHHHHHHhcCCc-----eE-E----EeecCCHHHHHHHHcCCcE
Confidence 5899999999999999999988 899999999999988775421000 00 0 0000000123355779999
Q ss_pred EEEeccC
Q 017997 82 VFVSVNT 88 (362)
Q Consensus 82 Vii~vpt 88 (362)
||.|+|.
T Consensus 72 VIn~a~~ 78 (450)
T 1ff9_A 72 VISLIPY 78 (450)
T ss_dssp EEECCC-
T ss_pred EEECCcc
Confidence 9999874
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00018 Score=65.63 Aligned_cols=100 Identities=11% Similarity=0.061 Sum_probs=66.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+++.|+|+|.+|.+++..|++. |. +|++++|++++.+++.+.. .. .+.+... ++++...++|
T Consensus 127 k~vlvlGaGg~g~aia~~L~~~--G~~~v~v~~R~~~~a~~la~~~------------~~--~~~~~~~-~~~~l~~~aD 189 (281)
T 3o8q_A 127 ATILLIGAGGAARGVLKPLLDQ--QPASITVTNRTFAKAEQLAELV------------AA--YGEVKAQ-AFEQLKQSYD 189 (281)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--CCSEEEEEESSHHHHHHHHHHH------------GG--GSCEEEE-EGGGCCSCEE
T ss_pred CEEEEECchHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHh------------hc--cCCeeEe-eHHHhcCCCC
Confidence 4799999999999999999998 85 9999999999988776420 00 0123332 3344337899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
+||-|+|.....+ .+.+. ...++++.+|++.+..|..|
T Consensus 190 iIInaTp~gm~~~------~~~l~---------~~~l~~~~~V~DlvY~P~~T 227 (281)
T 3o8q_A 190 VIINSTSASLDGE------LPAID---------PVIFSSRSVCYDMMYGKGYT 227 (281)
T ss_dssp EEEECSCCCC----------CSCC---------GGGEEEEEEEEESCCCSSCC
T ss_pred EEEEcCcCCCCCC------CCCCC---------HHHhCcCCEEEEecCCCccC
Confidence 9999987643210 11110 12456778888877766444
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00069 Score=64.00 Aligned_cols=113 Identities=16% Similarity=0.254 Sum_probs=68.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCC-----eEEEEeCCHHH----HH----HHHcCCCCCCCCChHHHHhhhcCCCEE
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSI-----EVAVVDISVSR----IN----AWNSDQLPIYEPGLDGVVKQCRGKNLF 67 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~-----~V~~~d~~~~~----~~----~l~~~~~~~~e~~l~~~~~~~~~~~l~ 67 (362)
+||+|+| +|.+|.++|..++.. +. ++.++|.+.+. ++ .|+....|+ ....+
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~--~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~-------------~~~v~ 97 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASG--EVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPL-------------LREVS 97 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT--TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-------------EEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHcC--CcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhh-------------cCCcE
Confidence 6899999 799999999999986 33 37776654332 32 223221111 11345
Q ss_pred EecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 68 FSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 68 ~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d-----~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
.+++..+++++||+||++-..|..+ |+ + +.| .+.+++..+.|.++..++.+|++- |.|..+.
T Consensus 98 i~~~~y~~~~daDvVVitag~prkp-G~--t-R~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVv-sNPvD~~ 164 (375)
T 7mdh_A 98 IGIDPYEVFEDVDWALLIGAKPRGP-GM--E-RAALLDINGQIFADQGKALNAVASKNVKVLVV-GNPCNTN 164 (375)
T ss_dssp EESCHHHHTTTCSEEEECCCCCCCT-TC--C-HHHHHHHHHHHHHHHHHHHHHHSCTTCEEEEC-SSSHHHH
T ss_pred EecCCHHHhCCCCEEEEcCCCCCCC-CC--C-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-cCchhHH
Confidence 5666566799999999987665432 21 1 122 244455556666665566666553 3565543
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00036 Score=63.84 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=47.7
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--C
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (362)
+||+|+|+ |.||..++..+.+. |++ .++++|+.+. +. + ...+...++++++.+ +
T Consensus 8 ~rVaViG~sG~~G~~~~~~l~~~--g~~-~V~~V~p~~~-----g~----~-----------~~G~~vy~sl~el~~~~~ 64 (288)
T 2nu8_A 8 TKVICQGFTGSQGTFHSEQAIAY--GTK-MVGGVTPGKG-----GT----T-----------HLGLPVFNTVREAVAATG 64 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--TCE-EEEEECTTCT-----TC----E-----------ETTEEEESSHHHHHHHHC
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCe-EEEEeCCCcc-----cc----e-----------eCCeeccCCHHHHhhcCC
Confidence 58999998 99999999999987 888 4455555321 10 0 013667788888777 8
Q ss_pred CcEEEEeccCC
Q 017997 79 ADIVFVSVNTP 89 (362)
Q Consensus 79 aDvVii~vptp 89 (362)
+|++++|+|.+
T Consensus 65 ~D~viI~tP~~ 75 (288)
T 2nu8_A 65 ATASVIYVPAP 75 (288)
T ss_dssp CCEEEECCCGG
T ss_pred CCEEEEecCHH
Confidence 99999998853
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00016 Score=63.83 Aligned_cols=73 Identities=15% Similarity=0.253 Sum_probs=48.7
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
||+|.|.| .|.+|..++..|++. | ++|++++|++++.+.+........ ...+.-..+.++++++
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~--G~~~V~~~~R~~~~~~~~~~~~~~~~------------~~Dl~d~~~~~~~~~~ 88 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADK--QTIKQTLFARQPAKIHKPYPTNSQII------------MGDVLNHAALKQAMQG 88 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC--TTEEEEEEESSGGGSCSSCCTTEEEE------------ECCTTCHHHHHHHHTT
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhC--CCceEEEEEcChhhhcccccCCcEEE------------EecCCCHHHHHHHhcC
Confidence 45799999 699999999999999 8 899999999876543221100000 0111111234456789
Q ss_pred CcEEEEecc
Q 017997 79 ADIVFVSVN 87 (362)
Q Consensus 79 aDvVii~vp 87 (362)
+|+||.+.+
T Consensus 89 ~D~vv~~a~ 97 (236)
T 3qvo_A 89 QDIVYANLT 97 (236)
T ss_dssp CSEEEEECC
T ss_pred CCEEEEcCC
Confidence 999998875
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00012 Score=63.66 Aligned_cols=104 Identities=12% Similarity=0.186 Sum_probs=62.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhhcCC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~~a 79 (362)
|||.|.| .|.+|..++..|++. |++|++++|++++.+.+ ....+. .+.+.- ..+..++++++
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~--~~~~~~------------~~D~~d~~~~~~~~~~~~ 64 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTT--DYQIYAGARKVEQVPQY--NNVKAV------------HFDVDWTPEEMAKQLHGM 64 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTS--SCEEEEEESSGGGSCCC--TTEEEE------------ECCTTSCHHHHHTTTTTC
T ss_pred CeEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCccchhhc--CCceEE------------EecccCCHHHHHHHHcCC
Confidence 7999999 799999999999999 99999999997654322 000000 011111 12334557789
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEee
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~S 127 (362)
|+||-+....... ....++......++.+.+. ..+.+|..+|
T Consensus 65 d~vi~~ag~~~~~-----~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS 106 (219)
T 3dqp_A 65 DAIINVSGSGGKS-----LLKVDLYGAVKLMQAAEKA-EVKRFILLST 106 (219)
T ss_dssp SEEEECCCCTTSS-----CCCCCCHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred CEEEECCcCCCCC-----cEeEeHHHHHHHHHHHHHh-CCCEEEEECc
Confidence 9999998654321 1234455455555555432 3344554443
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0011 Score=63.37 Aligned_cols=90 Identities=11% Similarity=0.100 Sum_probs=65.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH------HHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS------RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~------~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
.+|+|||.|.-|.+-|.+|.+. |.+|++=-|... ..++..+ .++++. +++++
T Consensus 38 K~IaVIGyGsQG~AqAlNLRDS--Gv~V~Vglr~~s~~e~~~S~~~A~~-------------------~Gf~v~-~~~eA 95 (491)
T 3ulk_A 38 KKVVIVGCGAQGLNQGLNMRDS--GLDISYALRKEAIAEKRASWRKATE-------------------NGFKVG-TYEEL 95 (491)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT--TCEEEEEECHHHHHTTCHHHHHHHH-------------------TTCEEE-EHHHH
T ss_pred CEEEEeCCChHhHHHHhHHHhc--CCcEEEEeCCCCcccccchHHHHHH-------------------CCCEec-CHHHH
Confidence 5899999999999999999999 999887655221 1112211 234443 47788
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
++.+|+|++-+|... -.++.+.|.+++++|+.+.....
T Consensus 96 ~~~ADvV~~L~PD~~---------------q~~vy~~I~p~lk~G~~L~faHG 133 (491)
T 3ulk_A 96 IPQADLVINLTPDKQ---------------HSDVVRTVQPLMKDGAALGYSHG 133 (491)
T ss_dssp GGGCSEEEECSCGGG---------------HHHHHHHHGGGSCTTCEEEESSC
T ss_pred HHhCCEEEEeCChhh---------------HHHHHHHHHhhCCCCCEEEecCc
Confidence 999999999987422 13456789999999999876544
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00039 Score=67.99 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=52.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE----ecCHHhhh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF----STDVEKHV 76 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~----t~d~~~a~ 76 (362)
+++|.|+|+|.+|.+++..|++.+ |++|+++||++++.+.+.+. ..+ ..+.. .+++.+++
T Consensus 23 ~k~VlIiGAGgiG~aia~~L~~~~-g~~V~v~~R~~~ka~~la~~-~~~--------------~~~~~D~~d~~~l~~~l 86 (467)
T 2axq_A 23 GKNVLLLGSGFVAQPVIDTLAAND-DINVTVACRTLANAQALAKP-SGS--------------KAISLDVTDDSALDKVL 86 (467)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTST-TEEEEEEESSHHHHHHHHGG-GTC--------------EEEECCTTCHHHHHHHH
T ss_pred CCEEEEECChHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHh-cCC--------------cEEEEecCCHHHHHHHH
Confidence 358999999999999999999863 68999999999999887642 000 00011 01334557
Q ss_pred cCCcEEEEeccC
Q 017997 77 SEADIVFVSVNT 88 (362)
Q Consensus 77 ~~aDvVii~vpt 88 (362)
+++|+||.|+|.
T Consensus 87 ~~~DvVIn~tp~ 98 (467)
T 2axq_A 87 ADNDVVISLIPY 98 (467)
T ss_dssp HTSSEEEECSCG
T ss_pred cCCCEEEECCch
Confidence 799999999774
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00038 Score=65.04 Aligned_cols=34 Identities=21% Similarity=0.572 Sum_probs=28.9
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
||||+|+| .|++|..+...|.++ |.+++..+..+
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~-p~~el~~l~s~ 38 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRH-PHMNITALTVS 38 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-TTEEEEEEEEE
T ss_pred ceEEEEECCCChHHHHHHHHHHhC-CCCcEEEEEec
Confidence 68999999 599999999999886 57888887654
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0021 Score=62.52 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=68.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH----HHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS----RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~----~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
+||.|||+|..|.+.|..|.+. |++|+++|.++. ..+.|.+...+ +..-.+.++.+.
T Consensus 10 k~v~viG~G~sG~s~A~~l~~~--G~~V~~~D~~~~~~~~~~~~L~~~gi~-----------------~~~g~~~~~~~~ 70 (451)
T 3lk7_A 10 KKVLVLGLARSGEAAARLLAKL--GAIVTVNDGKPFDENPTAQSLLEEGIK-----------------VVCGSHPLELLD 70 (451)
T ss_dssp CEEEEECCTTTHHHHHHHHHHT--TCEEEEEESSCGGGCHHHHHHHHTTCE-----------------EEESCCCGGGGG
T ss_pred CEEEEEeeCHHHHHHHHHHHhC--CCEEEEEeCCcccCChHHHHHHhCCCE-----------------EEECCChHHhhc
Confidence 4899999999999999999999 999999998542 33344432111 222223333346
Q ss_pred C-CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH---------HHHhhcCCCCEEEEeeCCccccHHH-HHHHHHhc
Q 017997 78 E-ADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------VIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHN 144 (362)
Q Consensus 78 ~-aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~---------~i~~~l~~~~iVv~~STv~~gt~~~-l~~~l~~~ 144 (362)
+ +|+||++..-|.+ .| .+..+.+ ++...+.+..+|-++.|..-.||.. +..+|.+.
T Consensus 71 ~~~d~vv~spgi~~~--------~p---~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~ 137 (451)
T 3lk7_A 71 EDFCYMIKNPGIPYN--------NP---MVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAG 137 (451)
T ss_dssp SCEEEEEECTTSCTT--------SH---HHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCcCCCC--------Ch---hHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 6 8999988544432 12 2333222 1222233457787777776566554 56667654
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00038 Score=67.78 Aligned_cols=88 Identities=22% Similarity=0.130 Sum_probs=64.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+++.|+|+|.+|..+|..|+.. |.+|+++|+++.+.+..... + .. ..+.++++..+|+
T Consensus 266 KtVvVtGaGgIG~aiA~~Laa~--GA~Viv~D~~~~~a~~Aa~~------------------g-~d-v~~lee~~~~aDv 323 (488)
T 3ond_A 266 KVAVVAGYGDVGKGCAAALKQA--GARVIVTEIDPICALQATME------------------G-LQ-VLTLEDVVSEADI 323 (488)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT------------------T-CE-ECCGGGTTTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh------------------C-Cc-cCCHHHHHHhcCE
Confidence 4789999999999999999999 99999999999877654431 1 22 2456677889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
++.+.+++.- .+ ....+.++++.+|++.+-
T Consensus 324 Vi~atG~~~v---------l~--------~e~l~~mk~gaiVvNaG~ 353 (488)
T 3ond_A 324 FVTTTGNKDI---------IM--------LDHMKKMKNNAIVCNIGH 353 (488)
T ss_dssp EEECSSCSCS---------BC--------HHHHTTSCTTEEEEESSS
T ss_pred EEeCCCChhh---------hh--------HHHHHhcCCCeEEEEcCC
Confidence 9998664321 11 123456788888887553
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00033 Score=65.46 Aligned_cols=72 Identities=10% Similarity=0.053 Sum_probs=46.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCH-HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc-
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~-~d~~~-~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (362)
|+||+|||+|.+|...+..| . ++.+|++ +|+++ ++.+++.+. .++. .-.....+|+++.++
T Consensus 2 ~~rvgiiG~G~~~~~~~~~l-~--~~~~lvav~d~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~~~ll~~ 65 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEGL-D--EECSITGIAPGVPEEDLSKLEKA------------ISEM-NIKPKKYNNWWEMLEK 65 (337)
T ss_dssp CEEEEEECSSSCHHHHHTTC-C--TTEEEEEEECSSTTCCCHHHHHH------------HHTT-TCCCEECSSHHHHHHH
T ss_pred ceEEEEEccchhHHHHHHhc-C--CCcEEEEEecCCchhhHHHHHHH------------HHHc-CCCCcccCCHHHHhcC
Confidence 36999999999988777666 3 3788775 68876 343333220 0000 001356788888775
Q ss_pred -CCcEEEEeccC
Q 017997 78 -EADIVFVSVNT 88 (362)
Q Consensus 78 -~aDvVii~vpt 88 (362)
+.|+|+||+|+
T Consensus 66 ~~vD~V~I~tp~ 77 (337)
T 3ip3_A 66 EKPDILVINTVF 77 (337)
T ss_dssp HCCSEEEECSSH
T ss_pred CCCCEEEEeCCc
Confidence 58999999774
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00012 Score=64.03 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=44.0
Q ss_pred ceEEEEcCChhHHHHHHH--HHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAV--IALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~--la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
++|+|||+|.+|..++.. +... |++++ ++|.|+++......+ -.+...+++++.+++
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~--g~~iVg~~D~dp~k~g~~i~g------------------v~V~~~~dl~eli~~ 145 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNN--NTKISMAFDINESKIGTEVGG------------------VPVYNLDDLEQHVKD 145 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC--------CCEEEEEESCTTTTTCEETT------------------EEEEEGGGHHHHCSS
T ss_pred CEEEEEccCHHHHHHHHHHhcccC--CcEEEEEEeCCHHHHHhHhcC------------------CeeechhhHHHHHHh
Confidence 579999999999999994 3333 77766 559998765432221 013345677776766
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
.|++++|+|+
T Consensus 146 ~D~ViIAvPs 155 (215)
T 2vt3_A 146 ESVAILTVPA 155 (215)
T ss_dssp CCEEEECSCH
T ss_pred CCEEEEecCc
Confidence 6999999874
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00034 Score=63.43 Aligned_cols=71 Identities=10% Similarity=0.105 Sum_probs=51.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc-CCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-EAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-~aD 80 (362)
++|.|+|+|.+|.+++..|++. |++|++++|++++.+.+.+.. .. .+.+.. .++++..+ ++|
T Consensus 120 ~~vlvlGaGg~g~a~a~~L~~~--G~~v~v~~R~~~~a~~l~~~~------------~~--~~~~~~-~~~~~~~~~~~D 182 (272)
T 1p77_A 120 QHVLILGAGGATKGVLLPLLQA--QQNIVLANRTFSKTKELAERF------------QP--YGNIQA-VSMDSIPLQTYD 182 (272)
T ss_dssp CEEEEECCSHHHHTTHHHHHHT--TCEEEEEESSHHHHHHHHHHH------------GG--GSCEEE-EEGGGCCCSCCS
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHc------------cc--cCCeEE-eeHHHhccCCCC
Confidence 5799999999999999999999 899999999999988776420 00 012322 23344223 899
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||-|+|.+
T Consensus 183 ivIn~t~~~ 191 (272)
T 1p77_A 183 LVINATSAG 191 (272)
T ss_dssp EEEECCCC-
T ss_pred EEEECCCCC
Confidence 999998754
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0015 Score=59.59 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=55.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec--CHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST--DVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~--d~~~a~~~ 78 (362)
.++.|+|+|.+|.+++..|++. |. +|++++|++++.+.+.+.. .. ......+...+ ++.+.+.+
T Consensus 128 k~vlVlGaGG~g~aia~~L~~~--G~~~v~i~~R~~~~a~~la~~~--------~~---~~~~~~i~~~~~~~l~~~l~~ 194 (283)
T 3jyo_A 128 DSVVQVGAGGVGNAVAYALVTH--GVQKLQVADLDTSRAQALADVI--------NN---AVGREAVVGVDARGIEDVIAA 194 (283)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSSHHHHHHHHHHH--------HH---HHTSCCEEEECSTTHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHH--------Hh---hcCCceEEEcCHHHHHHHHhc
Confidence 4789999999999999999998 87 7999999999988775410 00 00011233433 66677889
Q ss_pred CcEEEEeccCC
Q 017997 79 ADIVFVSVNTP 89 (362)
Q Consensus 79 aDvVii~vptp 89 (362)
+|+||-|+|..
T Consensus 195 ~DiVInaTp~G 205 (283)
T 3jyo_A 195 ADGVVNATPMG 205 (283)
T ss_dssp SSEEEECSSTT
T ss_pred CCEEEECCCCC
Confidence 99999997743
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00054 Score=58.39 Aligned_cols=73 Identities=29% Similarity=0.322 Sum_probs=48.4
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+|.|.|. |++|..++..|++. |++|++++|++++.+.+........ ...+.-.++..++++++|
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~--g~~V~~~~r~~~~~~~~~~~~~~~~------------~~D~~~~~~~~~~~~~~d 69 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQA--GYEVTVLVRDSSRLPSEGPRPAHVV------------VGDVLQAADVDKTVAGQD 69 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCGGGSCSSSCCCSEEE------------ESCTTSHHHHHHHHTTCS
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC--CCeEEEEEeChhhcccccCCceEEE------------EecCCCHHHHHHHHcCCC
Confidence 68999997 99999999999999 9999999999765432111000000 000100112345577899
Q ss_pred EEEEeccC
Q 017997 81 IVFVSVNT 88 (362)
Q Consensus 81 vVii~vpt 88 (362)
+||-+...
T Consensus 70 ~vi~~a~~ 77 (206)
T 1hdo_A 70 AVIVLLGT 77 (206)
T ss_dssp EEEECCCC
T ss_pred EEEECccC
Confidence 99998764
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00081 Score=60.85 Aligned_cols=100 Identities=13% Similarity=0.108 Sum_probs=65.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh-cCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (362)
+++.|+|+|.+|.+++..|++. |.+|++++|++++.+.+.+.... .+.+.. .+.++.. ..+|
T Consensus 120 k~vlViGaGg~g~a~a~~L~~~--G~~V~v~~R~~~~~~~la~~~~~--------------~~~~~~-~~~~~~~~~~~D 182 (271)
T 1nyt_A 120 LRILLIGAGGASRGVLLPLLSL--DCAVTITNRTVSRAEELAKLFAH--------------TGSIQA-LSMDELEGHEFD 182 (271)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHTGG--------------GSSEEE-CCSGGGTTCCCS
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHhhc--------------cCCeeE-ecHHHhccCCCC
Confidence 4799999999999999999999 89999999999988877542100 012322 2333322 4899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
+||-|+|.+...+ .+++. ...++++.+|++.++.|..|
T Consensus 183 ivVn~t~~~~~~~------~~~i~---------~~~l~~~~~v~D~~y~p~~t 220 (271)
T 1nyt_A 183 LIINATSSGISGD------IPAIP---------SSLIHPGIYCYDMFYQKGKT 220 (271)
T ss_dssp EEEECCSCGGGTC------CCCCC---------GGGCCTTCEEEESCCCSSCC
T ss_pred EEEECCCCCCCCC------CCCCC---------HHHcCCCCEEEEeccCCcCC
Confidence 9999987543210 01110 12356778888877775443
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0028 Score=56.37 Aligned_cols=32 Identities=22% Similarity=0.483 Sum_probs=26.0
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEE-EeC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAV-VDI 34 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~-~d~ 34 (362)
|||+|+|+ |.||..++..+.+. +++++++ +|+
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~-~~~elva~~d~ 34 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAA-DDLTLSAELDA 34 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHC-TTCEEEEEECT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEcc
Confidence 79999996 99999999888754 4788875 454
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00081 Score=61.59 Aligned_cols=64 Identities=13% Similarity=0.242 Sum_probs=43.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHc--CCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc-
Q 017997 2 VKICCIGAGYVGGPTMAVIALK--CPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~--~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (362)
+||+|||+|.||...+..+... .++.+++ ++|+++ ..+ ...+. .+|+++.++
T Consensus 8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~-----~a~------------------~~g~~-~~~~~ell~~ 63 (294)
T 1lc0_A 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRE-----LGS------------------LDEVR-QISLEDALRS 63 (294)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSC-----CCE------------------ETTEE-BCCHHHHHHC
T ss_pred ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchH-----HHH------------------HcCCC-CCCHHHHhcC
Confidence 6999999999999998888641 1356665 456642 000 01233 368888775
Q ss_pred -CCcEEEEeccCC
Q 017997 78 -EADIVFVSVNTP 89 (362)
Q Consensus 78 -~aDvVii~vptp 89 (362)
+.|+|++|+|++
T Consensus 64 ~~vD~V~i~tp~~ 76 (294)
T 1lc0_A 64 QEIDVAYICSESS 76 (294)
T ss_dssp SSEEEEEECSCGG
T ss_pred CCCCEEEEeCCcH
Confidence 789999998753
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00084 Score=64.41 Aligned_cols=42 Identities=26% Similarity=0.402 Sum_probs=37.1
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCC---CeEEEEeCCHHHHHHHHc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPS---IEVAVVDISVSRINAWNS 44 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G---~~V~~~d~~~~~~~~l~~ 44 (362)
|+||.|+|+|++|..++..|++. | .+|+++|+++++.+++.+
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~--g~~~~~V~v~~r~~~~~~~la~ 45 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMN--REVFSHITLASRTLSKCQEIAQ 45 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTC--TTTCCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCceEEEEEECCHHHHHHHHH
Confidence 78999999999999999999988 6 389999999999887654
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0013 Score=63.64 Aligned_cols=66 Identities=26% Similarity=0.330 Sum_probs=47.7
Q ss_pred eEEEEcCChhHHHHHHHHHHc--------CCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHH
Q 017997 3 KICCIGAGYVGGPTMAVIALK--------CPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~--------~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (362)
||+|||+|.||..++..|.++ +++.+|+ ++|+++++.+.+.. ...+++|++
T Consensus 12 rIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~--------------------~~~~~~d~~ 71 (444)
T 3mtj_A 12 HVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAG--------------------GLPLTTNPF 71 (444)
T ss_dssp EEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHT--------------------TCCEESCTH
T ss_pred cEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcc--------------------cCcccCCHH
Confidence 799999999999988777531 2355555 55899887665421 124567888
Q ss_pred hhhc--CCcEEEEeccC
Q 017997 74 KHVS--EADIVFVSVNT 88 (362)
Q Consensus 74 ~a~~--~aDvVii~vpt 88 (362)
+.++ +.|+|++|+|+
T Consensus 72 ell~d~diDvVve~tp~ 88 (444)
T 3mtj_A 72 DVVDDPEIDIVVELIGG 88 (444)
T ss_dssp HHHTCTTCCEEEECCCS
T ss_pred HHhcCCCCCEEEEcCCC
Confidence 8765 58999999874
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0011 Score=59.02 Aligned_cols=78 Identities=17% Similarity=0.123 Sum_probs=54.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+|++||+|.||..++.. . ++++. +|+ ++...+ ...+++|.++.++++|
T Consensus 13 ~rV~i~G~GaIG~~v~~~---~--~leLv~v~~---~k~gel----------------------gv~a~~d~d~lla~pD 62 (253)
T 1j5p_A 13 MTVLIIGMGNIGKKLVEL---G--NFEKIYAYD---RISKDI----------------------PGVVRLDEFQVPSDVS 62 (253)
T ss_dssp CEEEEECCSHHHHHHHHH---S--CCSEEEEEC---SSCCCC----------------------SSSEECSSCCCCTTCC
T ss_pred ceEEEECcCHHHHHHHhc---C--CcEEEEEEe---cccccc----------------------CceeeCCHHHHhhCCC
Confidence 899999999999998887 3 67764 455 221100 1346778887778999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHH-HHHhhcCCCCEEEEeeC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR-VIADVSKSDKIVVEKST 128 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~-~i~~~l~~~~iVv~~ST 128 (362)
+|+.|-+ .++++ .+.+.|+.|.-|+..|.
T Consensus 63 ~VVe~A~-------------------~~av~e~~~~iL~aG~dvv~~S~ 92 (253)
T 1j5p_A 63 TVVECAS-------------------PEAVKEYSLQILKNPVNYIIIST 92 (253)
T ss_dssp EEEECSC-------------------HHHHHHHHHHHTTSSSEEEECCG
T ss_pred EEEECCC-------------------HHHHHHHHHHHHHCCCCEEEcCh
Confidence 9999953 12333 46777888888877665
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0031 Score=57.09 Aligned_cols=99 Identities=17% Similarity=0.115 Sum_probs=64.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh-cCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~a 79 (362)
.++.|+|+|.+|.+++..|++. |. +|++++|++++.+++.+... ...+.+. ++++.- .++
T Consensus 121 k~~lvlGaGg~~~aia~~L~~~--G~~~v~i~~R~~~~a~~la~~~~---------------~~~~~~~-~~~~l~~~~~ 182 (272)
T 3pwz_A 121 RRVLLLGAGGAVRGALLPFLQA--GPSELVIANRDMAKALALRNELD---------------HSRLRIS-RYEALEGQSF 182 (272)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--CCSEEEEECSCHHHHHHHHHHHC---------------CTTEEEE-CSGGGTTCCC
T ss_pred CEEEEECccHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhc---------------cCCeeEe-eHHHhcccCC
Confidence 4799999999999999999998 85 99999999999888765210 0113322 222211 689
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|+||-|+|.....+ .+.+. ...++++.+|++....|..|
T Consensus 183 DivInaTp~gm~~~------~~~i~---------~~~l~~~~~V~DlvY~P~~T 221 (272)
T 3pwz_A 183 DIVVNATSASLTAD------LPPLP---------ADVLGEAALAYELAYGKGLT 221 (272)
T ss_dssp SEEEECSSGGGGTC------CCCCC---------GGGGTTCSEEEESSCSCCSC
T ss_pred CEEEECCCCCCCCC------CCCCC---------HHHhCcCCEEEEeecCCCCC
Confidence 99999977543210 11111 12456788888766555443
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0022 Score=57.65 Aligned_cols=54 Identities=20% Similarity=0.344 Sum_probs=44.9
Q ss_pred ceEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.++.|||.| .+|.++|..|... |.+|+++++. |.++++.+++||
T Consensus 151 k~vvVvG~s~iVG~plA~lL~~~--gAtVtv~~~~---------------------------------t~~L~~~~~~AD 195 (276)
T 3ngx_A 151 NTVTIVNRSPVVGRPLSMMLLNR--NYTVSVCHSK---------------------------------TKDIGSMTRSSK 195 (276)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSCHHHHHHHSS
T ss_pred CEEEEEcCChHHHHHHHHHHHHC--CCeEEEEeCC---------------------------------cccHHHhhccCC
Confidence 479999987 4899999999999 8999999752 235566789999
Q ss_pred EEEEeccCCC
Q 017997 81 IVFVSVNTPT 90 (362)
Q Consensus 81 vVii~vptp~ 90 (362)
+||.+++.|.
T Consensus 196 IVI~Avg~p~ 205 (276)
T 3ngx_A 196 IVVVAVGRPG 205 (276)
T ss_dssp EEEECSSCTT
T ss_pred EEEECCCCCc
Confidence 9999998763
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0012 Score=61.70 Aligned_cols=85 Identities=15% Similarity=0.154 Sum_probs=49.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHc-CCCCCCCCC-hHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNS-DQLPIYEPG-LDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~~~l~~-~~~~~~e~~-l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
+||+|+|+|.+|..++..|..+ ++++|+++ |.+++....+.+ .....+..- ....+.....+.+....+..+...+
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~-~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~ 81 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQ-DDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIED 81 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHS-SSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGG
T ss_pred eEEEEECCCHHHHHHHHHHHhC-CCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccC
Confidence 5999999999999999998876 36787655 666555544432 101111110 0111100011234444455555679
Q ss_pred CcEEEEecc
Q 017997 79 ADIVFVSVN 87 (362)
Q Consensus 79 aDvVii~vp 87 (362)
+|+||.|+|
T Consensus 82 vDiV~eatg 90 (343)
T 2yyy_A 82 ADIVVDGAP 90 (343)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 999999966
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.004 Score=58.06 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=33.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eC--CHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DI--SVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~--~~~~~~~l~~ 44 (362)
+||+|+|.|++|..+++.|.++ |+.+|+++ |+ +++.+..+.+
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~-~~vevvaI~d~~~~~~~~a~l~~ 48 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNS-GKVDIVAINDPFIDLNYMVYMFQ 48 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-CSSEEEEEECSSSCHHHHHHHHH
T ss_pred eEEEEEccCHHHHHHHHHHHcC-CCcEEEEecCCCCCHHHHHHHhh
Confidence 4999999999999999998876 47887766 53 7777766553
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0014 Score=60.08 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=48.4
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
+|+|.|.| .|++|..++..|++. |++|++++|++...+ +. + ..+ ..+.+. ..+..++++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~-~~-~-~~~------------~~~Dl~-~~~~~~~~~~~ 63 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKND--GNTPIILTRSIGNKA-IN-D-YEY------------RVSDYT-LEDLINQLNDV 63 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCCC-------C-CEE------------EECCCC-HHHHHHHTTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhC--CCEEEEEeCCCCccc-CC-c-eEE------------EEcccc-HHHHHHhhcCC
Confidence 37999999 699999999999999 999999999844433 32 1 110 012233 34456678899
Q ss_pred cEEEEeccC
Q 017997 80 DIVFVSVNT 88 (362)
Q Consensus 80 DvVii~vpt 88 (362)
|+||-|...
T Consensus 64 d~Vih~a~~ 72 (311)
T 3m2p_A 64 DAVVHLAAT 72 (311)
T ss_dssp SEEEECCCC
T ss_pred CEEEEcccc
Confidence 999998753
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0012 Score=58.94 Aligned_cols=33 Identities=15% Similarity=0.377 Sum_probs=30.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~ 36 (362)
.+|.|||+|.+|..+|..|+.. |. +++++|.+.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~--Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASA--GVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHc--CCCeEEEEcCCC
Confidence 4899999999999999999999 76 899999987
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00083 Score=60.76 Aligned_cols=74 Identities=11% Similarity=0.085 Sum_probs=50.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||.|.| .|++|..++..|++. +|++|++++|++++.+.+......+.. +.+.-.+++.++++++|
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~-~g~~V~~~~R~~~~~~~~~~~~v~~~~------------~D~~d~~~l~~~~~~~d 67 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIAN-HIDHFHIGVRNVEKVPDDWRGKVSVRQ------------LDYFNQESMVEAFKGMD 67 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT-TCTTEEEEESSGGGSCGGGBTTBEEEE------------CCTTCHHHHHHHTTTCS
T ss_pred CEEEEEcCCchHHHHHHHHHhhC-CCCcEEEEECCHHHHHHhhhCCCEEEE------------cCCCCHHHHHHHHhCCC
Confidence 7999999 599999999999875 279999999998776544332111100 11111123455678999
Q ss_pred EEEEeccC
Q 017997 81 IVFVSVNT 88 (362)
Q Consensus 81 vVii~vpt 88 (362)
+||.+.+.
T Consensus 68 ~vi~~a~~ 75 (289)
T 3e48_A 68 TVVFIPSI 75 (289)
T ss_dssp EEEECCCC
T ss_pred EEEEeCCC
Confidence 99998753
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0021 Score=59.72 Aligned_cols=117 Identities=20% Similarity=0.216 Sum_probs=66.1
Q ss_pred CceEEEEcCChhHHHHHHHHHHc-------CCCCeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEe--
Q 017997 1 MVKICCIGAGYVGGPTMAVIALK-------CPSIEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFS-- 69 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~-------~~G~~V~~~-d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t-- 69 (362)
|+||+|||+|.||..++..|.+. +++.+|+++ |+++++.+. ..+.+.+.. .... .++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~----------id~~~~~~~~~~~~--~~~~~ 69 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGD----------FSLVEALRMKRETG--MLRDD 69 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESS----------CCHHHHHHHHHHHS--SCSBC
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccc----------cCHHHHHhhhccCc--cccCC
Confidence 78999999999999999998764 136676655 666433211 001111100 0001 122
Q ss_pred cCHHhhhc--CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc-cHHHHHHHHHh
Q 017997 70 TDVEKHVS--EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK-TAEAIEKILTH 143 (362)
Q Consensus 70 ~d~~~a~~--~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g-t~~~l~~~l~~ 143 (362)
.|+++.++ +.|+|++|+|+.... .. +.+.+...+..+.-|+..++-|.. ..+++.+..++
T Consensus 70 ~d~~~ll~~~~iDvVv~~tp~~~h~-------------~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~ 132 (327)
T 3do5_A 70 AKAIEVVRSADYDVLIEASVTRVDG-------------GE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAER 132 (327)
T ss_dssp CCHHHHHHHSCCSEEEECCCCC-----------------C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhcCCCCCEEEECCCCcccc-------------hh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHh
Confidence 37777664 689999998754211 12 344555667788888876554433 22345444444
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0043 Score=56.50 Aligned_cols=72 Identities=18% Similarity=0.358 Sum_probs=55.3
Q ss_pred ceEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.++.|||.|. +|.++|..|... |.+|+++++. +.++.+.+++||
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~hs~---------------------------------t~~L~~~~~~AD 210 (301)
T 1a4i_A 166 RHAVVVGRSKIVGAPMHDLLLWN--NATVTTCHSK---------------------------------TAHLDEEVNKGD 210 (301)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSSHHHHHTTCS
T ss_pred CEEEEECCCchHHHHHHHHHHhC--CCeEEEEECC---------------------------------cccHHHHhccCC
Confidence 4799999995 899999999998 8999999742 235666789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
+||.+++.|.-. . ...++++.+||+-+.
T Consensus 211 IVI~Avg~p~~I--------------~------~~~vk~GavVIDVgi 238 (301)
T 1a4i_A 211 ILVVATGQPEMV--------------K------GEWIKPGAIVIDCGI 238 (301)
T ss_dssp EEEECCCCTTCB--------------C------GGGSCTTCEEEECCC
T ss_pred EEEECCCCcccC--------------C------HHHcCCCcEEEEccC
Confidence 999999876321 0 123578999987443
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0037 Score=56.94 Aligned_cols=71 Identities=23% Similarity=0.358 Sum_probs=53.6
Q ss_pred ceEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHH--hhhcC
Q 017997 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE--KHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~--~a~~~ 78 (362)
.++.|||.|. +|.++|..|... |.+|+++++... +++ +.+++
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~~~~T~---------------------------------~l~l~~~~~~ 210 (300)
T 4a26_A 166 KRAVVLGRSNIVGAPVAALLMKE--NATVTIVHSGTS---------------------------------TEDMIDYLRT 210 (300)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTTSC---------------------------------HHHHHHHHHT
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCCC---------------------------------Cchhhhhhcc
Confidence 4799999876 899999999999 899999986311 233 56889
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEee
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~S 127 (362)
||+||.+++.|.-. . ...++++.+||+.+
T Consensus 211 ADIVI~Avg~p~~I---------~-----------~~~vk~GavVIDvg 239 (300)
T 4a26_A 211 ADIVIAAMGQPGYV---------K-----------GEWIKEGAAVVDVG 239 (300)
T ss_dssp CSEEEECSCCTTCB---------C-----------GGGSCTTCEEEECC
T ss_pred CCEEEECCCCCCCC---------c-----------HHhcCCCcEEEEEe
Confidence 99999999876321 1 13468899988743
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0065 Score=59.76 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=68.9
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~~~G~~V~~~d~~~~-~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
++|.|||+|..|.+ +|..|.+. |++|+++|..+. ..+.|++...+ +..-.+.+. +.++
T Consensus 23 ~~v~viGiG~sG~s~~A~~l~~~--G~~V~~~D~~~~~~~~~l~~~gi~-----------------~~~g~~~~~-~~~~ 82 (494)
T 4hv4_A 23 RHIHFVGIGGAGMGGIAEVLANE--GYQISGSDLAPNSVTQHLTALGAQ-----------------IYFHHRPEN-VLDA 82 (494)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHT--TCEEEEECSSCCHHHHHHHHTTCE-----------------EESSCCGGG-GTTC
T ss_pred CEEEEEEEcHhhHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHCCCE-----------------EECCCCHHH-cCCC
Confidence 58999999999996 89999999 999999997642 33444432221 111123333 6789
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHH----------HHHHhhcCCCCEEEEeeCCccccHHH-HHHHHHhc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAA----------RVIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHN 144 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~----------~~i~~~l~~~~iVv~~STv~~gt~~~-l~~~l~~~ 144 (362)
|+||++-.-|.+ .| .+..+. +-+...++...+|-++.|..=.||.. +..+|.+.
T Consensus 83 d~vV~Spgi~~~--------~p---~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~ 147 (494)
T 4hv4_A 83 SVVVVSTAISAD--------NP---EIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEA 147 (494)
T ss_dssp SEEEECTTSCTT--------CH---HHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCC--------CH---HHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhc
Confidence 999987433321 12 223222 22334444455777777776666654 56777664
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.002 Score=58.27 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=51.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.++.|+|+|.+|.+++..|++. |. +|++++|++++.+.+.+.. + ..+..+.. +.++|
T Consensus 120 ~~vlvlGaGgaarav~~~L~~~--G~~~i~v~nRt~~ka~~la~~~-----------------~-~~~~~~~~--~~~~D 177 (271)
T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNS--GFEKLKIYARNVKTGQYLAALY-----------------G-YAYINSLE--NQQAD 177 (271)
T ss_dssp SCEEEECSSTTHHHHHHHHHHT--TCCCEEEECSCHHHHHHHHHHH-----------------T-CEEESCCT--TCCCS
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHc-----------------C-Cccchhhh--cccCC
Confidence 4799999999999999999998 76 8999999999988876420 0 12222222 46899
Q ss_pred EEEEeccCCC
Q 017997 81 IVFVSVNTPT 90 (362)
Q Consensus 81 vVii~vptp~ 90 (362)
+||-|+|.+.
T Consensus 178 ivInaTp~gm 187 (271)
T 1npy_A 178 ILVNVTSIGM 187 (271)
T ss_dssp EEEECSSTTC
T ss_pred EEEECCCCCc
Confidence 9999988654
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00031 Score=61.17 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=46.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc-CC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-EA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~-~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-~a 79 (362)
++|+|||+|.+|..++..+.... |+++++ +|.|+++......+ . .+...+++++.++ +.
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~g-v-----------------~V~~~~dl~ell~~~I 141 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRG-G-----------------VIEHVDLLPQRVPGRI 141 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETT-E-----------------EEEEGGGHHHHSTTTC
T ss_pred CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcC-C-----------------eeecHHhHHHHHHcCC
Confidence 58999999999999988643333 676655 59988765432211 0 1233567777554 68
Q ss_pred cEEEEeccC
Q 017997 80 DIVFVSVNT 88 (362)
Q Consensus 80 DvVii~vpt 88 (362)
|.|++|+|+
T Consensus 142 D~ViIA~Ps 150 (211)
T 2dt5_A 142 EIALLTVPR 150 (211)
T ss_dssp CEEEECSCH
T ss_pred CEEEEeCCc
Confidence 999999874
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0063 Score=55.48 Aligned_cols=104 Identities=16% Similarity=0.108 Sum_probs=66.0
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--C
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (362)
+||+|+|+ |.||..++..+.+. |++ .++.+++.+. +. + ...+.+..+++++.+ .
T Consensus 8 ~~VaVvGasG~~G~~~~~~l~~~--g~~-~v~~VnP~~~-----g~----~-----------i~G~~vy~sl~el~~~~~ 64 (288)
T 1oi7_A 8 TRVLVQGITGREGQFHTKQMLTY--GTK-IVAGVTPGKG-----GM----E-----------VLGVPVYDTVKEAVAHHE 64 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--TCE-EEEEECTTCT-----TC----E-----------ETTEEEESSHHHHHHHSC
T ss_pred CEEEEECCCCCHHHHHHHHHHHc--CCe-EEEEECCCCC-----Cc----e-----------ECCEEeeCCHHHHhhcCC
Confidence 58999998 99999999999888 898 4455555321 10 0 013667778888777 8
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
+|++++++|.+ ...+++++..+. .-..+|+.++.++....+++.+..++.
T Consensus 65 ~Dv~Ii~vp~~---------------~~~~~~~ea~~~-Gi~~vVi~t~G~~~~~~~~l~~~a~~~ 114 (288)
T 1oi7_A 65 VDASIIFVPAP---------------AAADAALEAAHA-GIPLIVLITEGIPTLDMVRAVEEIKAL 114 (288)
T ss_dssp CSEEEECCCHH---------------HHHHHHHHHHHT-TCSEEEECCSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCHH---------------HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 99999998732 334555555443 223355544445543344566555554
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0039 Score=56.60 Aligned_cols=33 Identities=18% Similarity=0.407 Sum_probs=30.9
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|||.|.|+ |++|..++..|.++ ||+|+++.|++
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~--G~~V~~l~R~~ 34 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNAR--GHEVTLVSRKP 34 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCC
Confidence 89999997 99999999999999 99999999864
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0048 Score=55.83 Aligned_cols=53 Identities=28% Similarity=0.474 Sum_probs=44.6
Q ss_pred ceEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.++.|||.|. +|.++|..|... |.+|+++++. +.++.+.+++||
T Consensus 160 k~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~hs~---------------------------------t~~L~~~~~~AD 204 (288)
T 1b0a_A 160 LNAVVIGASNIVGRPMSMELLLA--GCTTTVTHRF---------------------------------TKNLRHHVENAD 204 (288)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTT--TCEEEEECSS---------------------------------CSCHHHHHHHCS
T ss_pred CEEEEECCChHHHHHHHHHHHHC--CCeEEEEeCC---------------------------------chhHHHHhccCC
Confidence 4799999996 799999999998 8999999743 235566789999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.+++.|
T Consensus 205 IVI~Avg~p 213 (288)
T 1b0a_A 205 LLIVAVGKP 213 (288)
T ss_dssp EEEECSCCT
T ss_pred EEEECCCCc
Confidence 999999976
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0014 Score=59.12 Aligned_cols=74 Identities=14% Similarity=0.251 Sum_probs=49.9
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+|.|.|. |++|..++..|++..+|++|+++++++++.+.+......+.. +.+.-..+..++++++|
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~------------~D~~d~~~l~~~~~~~d 68 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRH------------GDYNQPESLQKAFAGVS 68 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEE------------CCTTCHHHHHHHTTTCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEE------------eccCCHHHHHHHHhcCC
Confidence 68999996 999999999998753479999999988766655432111100 11111122445678899
Q ss_pred EEEEecc
Q 017997 81 IVFVSVN 87 (362)
Q Consensus 81 vVii~vp 87 (362)
+||-+..
T Consensus 69 ~vi~~a~ 75 (287)
T 2jl1_A 69 KLLFISG 75 (287)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9998865
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.003 Score=57.37 Aligned_cols=66 Identities=9% Similarity=0.154 Sum_probs=50.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.++.|+|+|.+|.+++..|++. |. +|++++|++++.+++.+.. . ....++..+ + ++|
T Consensus 123 k~vlvlGaGGaaraia~~L~~~--G~~~v~v~nRt~~ka~~La~~~-----------------~-~~~~~~l~~-l-~~D 180 (282)
T 3fbt_A 123 NICVVLGSGGAARAVLQYLKDN--FAKDIYVVTRNPEKTSEIYGEF-----------------K-VISYDELSN-L-KGD 180 (282)
T ss_dssp SEEEEECSSTTHHHHHHHHHHT--TCSEEEEEESCHHHHHHHCTTS-----------------E-EEEHHHHTT-C-CCS
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHhc-----------------C-cccHHHHHh-c-cCC
Confidence 4799999999999999999998 87 9999999999998886531 0 111123333 4 899
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||-|+|..
T Consensus 181 ivInaTp~G 189 (282)
T 3fbt_A 181 VIINCTPKG 189 (282)
T ss_dssp EEEECSSTT
T ss_pred EEEECCccC
Confidence 999997753
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0069 Score=54.76 Aligned_cols=53 Identities=25% Similarity=0.371 Sum_probs=44.3
Q ss_pred ceEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.++.|||.|. +|.++|..|+.. |.+|+.+++. |.++++.+++||
T Consensus 161 k~vvVvGrs~iVG~p~A~lL~~~--gAtVtv~h~~---------------------------------t~~L~~~~~~AD 205 (285)
T 3p2o_A 161 KDAVIIGASNIVGRPMATMLLNA--GATVSVCHIK---------------------------------TKDLSLYTRQAD 205 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSCHHHHHTTCS
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCC---------------------------------chhHHHHhhcCC
Confidence 4799999876 799999999998 8999998752 134566789999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.+++.|
T Consensus 206 IVI~Avg~p 214 (285)
T 3p2o_A 206 LIIVAAGCV 214 (285)
T ss_dssp EEEECSSCT
T ss_pred EEEECCCCC
Confidence 999999866
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.002 Score=60.61 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=26.8
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
|||+|+| .|++|..++..|.++ |.++|+.+..
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~-p~~ev~~i~~ 41 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADH-PMFELTALAA 41 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-SSEEEEEEEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcC-CCCEEEEEEc
Confidence 6999999 899999999998876 4678887743
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0085 Score=54.17 Aligned_cols=53 Identities=28% Similarity=0.454 Sum_probs=44.1
Q ss_pred ceEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.++.|||.|. +|.++|..|... |.+|++.++. |.++++.+++||
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~hs~---------------------------------t~~L~~~~~~AD 206 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNA--KATVTTCHRF---------------------------------TTDLKSHTTKAD 206 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSSHHHHHTTCS
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCeEEEEeCC---------------------------------chhHHHhcccCC
Confidence 4799999877 799999999998 8999998642 235566789999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.+++.|
T Consensus 207 IVI~Avg~p 215 (285)
T 3l07_A 207 ILIVAVGKP 215 (285)
T ss_dssp EEEECCCCT
T ss_pred EEEECCCCC
Confidence 999999866
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.013 Score=53.62 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=66.2
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--C
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (362)
.+|.|+|+ |.+|..++..+.+. |++ .++++|+.+. +. .+ ..+.+..+++++.+ +
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~--g~~-~V~~VnP~~~-----g~-~i--------------~G~~vy~sl~el~~~~~ 70 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLEC--GTK-IVGGVTPGKG-----GQ-NV--------------HGVPVFDTVKEAVKETD 70 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT--TCC-EEEEECTTCT-----TC-EE--------------TTEEEESSHHHHHHHHC
T ss_pred CEEEEECCCCCHHHHHHHHHHhC--CCe-EEEEeCCCCC-----Cc-eE--------------CCEeeeCCHHHHhhcCC
Confidence 36888898 99999999999987 888 6667665421 00 00 13667788888777 8
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
+|++++++|.+ ...+++++..+. ....+|+.++.++....+++.+..++.
T Consensus 71 ~Dv~ii~vp~~---------------~~~~~v~ea~~~-Gi~~vVi~t~G~~~~~~~~l~~~A~~~ 120 (294)
T 2yv1_A 71 ANASVIFVPAP---------------FAKDAVFEAIDA-GIELIVVITEHIPVHDTMEFVNYAEDV 120 (294)
T ss_dssp CCEEEECCCHH---------------HHHHHHHHHHHT-TCSEEEECCSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEccCHH---------------HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 99999998742 334555555443 233345544445544344666655554
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0093 Score=53.89 Aligned_cols=70 Identities=29% Similarity=0.420 Sum_probs=53.3
Q ss_pred ceEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.++.|||.|. +|.++|..|+.. |.+|+.+.+. |.++++.+++||
T Consensus 162 k~vvVvGrs~iVG~plA~lL~~~--gAtVtv~hs~---------------------------------T~~L~~~~~~AD 206 (286)
T 4a5o_A 162 MDAVVVGASNIVGRPMALELLLG--GCTVTVTHRF---------------------------------TRDLADHVSRAD 206 (286)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSCHHHHHHTCS
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCeEEEEeCC---------------------------------CcCHHHHhccCC
Confidence 4799999876 899999999998 8999998642 134566789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+||.+++.|.-. . ...++++.+|++-
T Consensus 207 IVI~Avg~p~~I---------~-----------~~~vk~GavVIDv 232 (286)
T 4a5o_A 207 LVVVAAGKPGLV---------K-----------GEWIKEGAIVIDV 232 (286)
T ss_dssp EEEECCCCTTCB---------C-----------GGGSCTTCEEEEC
T ss_pred EEEECCCCCCCC---------C-----------HHHcCCCeEEEEe
Confidence 999999866321 0 1345889988863
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0008 Score=60.84 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=33.0
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~ 38 (362)
||||.|.|+|++|..++..|++. |++|++++++++.
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~--g~~V~~~~r~~~~ 38 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQ--GHEVTGLRRSAQP 38 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT--TCCEEEEECTTSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCccc
Confidence 47999999999999999999999 9999999998654
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0032 Score=58.01 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=35.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
|+|.|.|. |++|..++..|++. |++|+++++++++.+.+.
T Consensus 12 ~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~ 52 (342)
T 1y1p_A 12 SLVLVTGANGFVASHVVEQLLEH--GYKVRGTARSASKLANLQ 52 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCcccHHHHH
Confidence 68999997 99999999999999 999999999988766543
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0026 Score=55.84 Aligned_cols=74 Identities=7% Similarity=0.085 Sum_probs=51.0
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
+|+|.|.| .|.+|..++..|++.++|++|++++|++++.+.+..+ ..+.. ..+.-.++..++++++
T Consensus 4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~-~~~~~------------~D~~d~~~~~~~~~~~ 70 (253)
T 1xq6_A 4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGE-ADVFI------------GDITDADSINPAFQGI 70 (253)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCC-TTEEE------------CCTTSHHHHHHHHTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCC-eeEEE------------ecCCCHHHHHHHHcCC
Confidence 47899998 6999999999999984469999999999887765221 11100 0111012344557789
Q ss_pred cEEEEecc
Q 017997 80 DIVFVSVN 87 (362)
Q Consensus 80 DvVii~vp 87 (362)
|+||-+..
T Consensus 71 d~vi~~a~ 78 (253)
T 1xq6_A 71 DALVILTS 78 (253)
T ss_dssp SEEEECCC
T ss_pred CEEEEecc
Confidence 99999875
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0053 Score=57.21 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=30.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eC--CHHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DI--SVSRINAW 42 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~--~~~~~~~l 42 (362)
+||+|+|.|++|..+++.|.++ |+.+|+++ |. +++....+
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~-p~vevvaI~d~~~~~~~~~~l 46 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQS-EDVELVAVNDPFITTDYMTYM 46 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-SSEEEEEEECSSSCHHHHHHH
T ss_pred eEEEEECcCHHHHHHHHHHhCC-CCeEEEEEECCCCCHHHHHHh
Confidence 3999999999999999998875 46777766 42 56655554
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0013 Score=62.16 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=31.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|||.|||+|..|+.+|..|+++ |++|+++|+++
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~--G~~v~v~Er~~ 34 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKH--GIKVTIYERNS 34 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCEEEEecCC
Confidence 8999999999999999999999 99999999764
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00083 Score=62.01 Aligned_cols=73 Identities=19% Similarity=0.184 Sum_probs=49.9
Q ss_pred ceEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEE-E--e--cCHHhh
Q 017997 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF-F--S--TDVEKH 75 (362)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~-~--t--~d~~~a 75 (362)
.++.|||.|. +|.++|..|+.. |.+|+++||+..++....+. +... ....+ + + .++.+.
T Consensus 178 k~vvVIG~G~iVG~~~A~~L~~~--gAtVtv~nR~~~~l~~ra~~---la~~----------~~~~t~~~~t~~~~L~e~ 242 (320)
T 1edz_A 178 KKCIVINRSEIVGRPLAALLAND--GATVYSVDVNNIQKFTRGES---LKLN----------KHHVEDLGEYSEDLLKKC 242 (320)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTT--SCEEEEECSSEEEEEESCCC---SSCC----------CCEEEEEEECCHHHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHHHC--CCEEEEEeCchHHHHhHHHH---Hhhh----------cccccccccccHhHHHHH
Confidence 4799999996 599999999998 89999999974332111110 0000 01111 1 2 567788
Q ss_pred hcCCcEEEEeccCC
Q 017997 76 VSEADIVFVSVNTP 89 (362)
Q Consensus 76 ~~~aDvVii~vptp 89 (362)
+.+||+||.+++.|
T Consensus 243 l~~ADIVIsAtg~p 256 (320)
T 1edz_A 243 SLDSDVVITGVPSE 256 (320)
T ss_dssp HHHCSEEEECCCCT
T ss_pred hccCCEEEECCCCC
Confidence 99999999999876
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0026 Score=59.57 Aligned_cols=33 Identities=27% Similarity=0.521 Sum_probs=26.7
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
|||+|+| .|++|..+.+.|.++ |..+++.+...
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~-p~~elv~v~s~ 38 (345)
T 2ozp_A 5 KTLSIVGASGYAGGEFLRLALSH-PYLEVKQVTSR 38 (345)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC-TTEEEEEEBCS
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCcEEEEEECc
Confidence 6899999 699999999999876 45687776543
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0019 Score=58.80 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=48.8
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCC------HHHHHHH---HcCCCCCCCCChHHHHhhhcCCCEEEec
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDIS------VSRINAW---NSDQLPIYEPGLDGVVKQCRGKNLFFST 70 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~------~~~~~~l---~~~~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (362)
||+|.|.|+ |.+|..++..|++. |++|++++|+ +++.+.+ ......+.. +.+.-..
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~------------~D~~d~~ 69 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDL--GHPTFLLVRESTASSNSEKAQLLESFKASGANIVH------------GSIDDHA 69 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEEC------------CCTTCHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC--CCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEE------------eccCCHH
Confidence 468999996 99999999999999 9999999997 4444332 221111111 1111112
Q ss_pred CHHhhhcCCcEEEEecc
Q 017997 71 DVEKHVSEADIVFVSVN 87 (362)
Q Consensus 71 d~~~a~~~aDvVii~vp 87 (362)
++.++++++|+||.+.+
T Consensus 70 ~l~~~~~~~d~vi~~a~ 86 (308)
T 1qyc_A 70 SLVEAVKNVDVVISTVG 86 (308)
T ss_dssp HHHHHHHTCSEEEECCC
T ss_pred HHHHHHcCCCEEEECCc
Confidence 34456789999999875
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0025 Score=58.18 Aligned_cols=74 Identities=11% Similarity=0.149 Sum_probs=50.4
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCC-----HHHHHHHH---cCCCCCCCCChHHHHhhhcCCCEEEecC
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDIS-----VSRINAWN---SDQLPIYEPGLDGVVKQCRGKNLFFSTD 71 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~-----~~~~~~l~---~~~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (362)
||+|.|.|+ |.+|..++..|++. |++|++++|+ +++.+.+. .....+. .+.+.-..+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~------------~~D~~d~~~ 69 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISL--GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI------------EASLDDHQR 69 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEE------------CCCSSCHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC--CCcEEEEECCCcccchhHHHHHHHHHhCCeEEE------------eCCCCCHHH
Confidence 478999995 99999999999999 9999999998 55554432 2111110 011111123
Q ss_pred HHhhhcCCcEEEEeccC
Q 017997 72 VEKHVSEADIVFVSVNT 88 (362)
Q Consensus 72 ~~~a~~~aDvVii~vpt 88 (362)
+.++++++|+||.+.+.
T Consensus 70 l~~~~~~~d~vi~~a~~ 86 (313)
T 1qyd_A 70 LVDALKQVDVVISALAG 86 (313)
T ss_dssp HHHHHTTCSEEEECCCC
T ss_pred HHHHHhCCCEEEECCcc
Confidence 45667899999999764
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0018 Score=58.92 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=50.0
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCH-------HHHHHHH---cCCCCCCCCChHHHHhhhcCCCEEEe
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV-------SRINAWN---SDQLPIYEPGLDGVVKQCRGKNLFFS 69 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~-------~~~~~l~---~~~~~~~e~~l~~~~~~~~~~~l~~t 69 (362)
||+|.|.|+ |.+|..++..|++. |++|++++|++ ++.+.+. .....+.. +.+.-.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~------------~D~~d~ 67 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKA--GNPTYALVRKTITAANPETKEELIDNYQSLGVILLE------------GDINDH 67 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHH--TCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEE------------CCTTCH
T ss_pred CcEEEEECCCchHHHHHHHHHHhC--CCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEE------------eCCCCH
Confidence 689999996 99999999999999 99999999986 5554332 11111100 011101
Q ss_pred cCHHhhhcCCcEEEEeccC
Q 017997 70 TDVEKHVSEADIVFVSVNT 88 (362)
Q Consensus 70 ~d~~~a~~~aDvVii~vpt 88 (362)
+++.++++++|+||-+.+.
T Consensus 68 ~~l~~~~~~~d~vi~~a~~ 86 (307)
T 2gas_A 68 ETLVKAIKQVDIVICAAGR 86 (307)
T ss_dssp HHHHHHHTTCSEEEECSSS
T ss_pred HHHHHHHhCCCEEEECCcc
Confidence 2244567899999998763
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0089 Score=55.15 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=52.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCC---HHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe--cC---H
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS---VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS--TD---V 72 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~---~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t--~d---~ 72 (362)
.++.|+|+|.+|.+++..|++. |. +|++++|+ .++.+++.+. + .......+... ++ +
T Consensus 155 k~~lVlGaGG~g~aia~~L~~~--Ga~~V~i~nR~~~~~~~a~~la~~-----------~-~~~~~~~~~~~~~~~~~~l 220 (315)
T 3tnl_A 155 KKMTICGAGGAATAICIQAALD--GVKEISIFNRKDDFYANAEKTVEK-----------I-NSKTDCKAQLFDIEDHEQL 220 (315)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCSEEEEEECSSTTHHHHHHHHHH-----------H-HHHSSCEEEEEETTCHHHH
T ss_pred CEEEEECCChHHHHHHHHHHHC--CCCEEEEEECCCchHHHHHHHHHH-----------h-hhhcCCceEEeccchHHHH
Confidence 4789999999999999999998 87 89999999 8888776531 0 00000112221 22 3
Q ss_pred HhhhcCCcEEEEeccCC
Q 017997 73 EKHVSEADIVFVSVNTP 89 (362)
Q Consensus 73 ~~a~~~aDvVii~vptp 89 (362)
.+.+.++|+||-|+|..
T Consensus 221 ~~~l~~aDiIINaTp~G 237 (315)
T 3tnl_A 221 RKEIAESVIFTNATGVG 237 (315)
T ss_dssp HHHHHTCSEEEECSSTT
T ss_pred HhhhcCCCEEEECccCC
Confidence 44577999999997743
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0012 Score=61.40 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=43.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCC-------CCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCP-------SIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~-------G~~V-~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (362)
+||+|||+|.||..++..+.+... +.+| .++|+++++.+ + +. .-.+++|++
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~----~--------~~---------~~~~~~d~~ 62 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPR----A--------IP---------QELLRAEPF 62 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCC----S--------SC---------GGGEESSCC
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhh----c--------cC---------cccccCCHH
Confidence 689999999999999999887510 2454 44577743211 1 10 012467777
Q ss_pred hhhcCCcEEEEeccC
Q 017997 74 KHVSEADIVFVSVNT 88 (362)
Q Consensus 74 ~a~~~aDvVii~vpt 88 (362)
+.+ +.|+|++|+|+
T Consensus 63 ~ll-~iDvVve~t~~ 76 (332)
T 2ejw_A 63 DLL-EADLVVEAMGG 76 (332)
T ss_dssp CCT-TCSEEEECCCC
T ss_pred HHh-CCCEEEECCCC
Confidence 767 99999999764
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0036 Score=58.73 Aligned_cols=31 Identities=29% Similarity=0.591 Sum_probs=26.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEe
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVD 33 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d 33 (362)
+||+|+| .|++|..+...|.++ |..+++.+.
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~-p~~elvai~ 36 (350)
T 2ep5_A 5 IKVSLLGSTGMVGQKMVKMLAKH-PYLELVKVS 36 (350)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-SSEEEEEEE
T ss_pred cEEEEECcCCHHHHHHHHHHHhC-CCcEEEEEe
Confidence 6899999 799999999988875 567887774
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.076 Score=47.55 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=76.9
Q ss_pred CEEEecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 65 NLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 65 ~l~~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
++..++|-.+|++++|++|+-+| ... .-...++.+.++++.+.+|.++.|+|+-. +...++..
T Consensus 128 GVkVtsDD~EAvk~AEi~IlftP--fG~------------~t~~Iakkii~~lpEgAII~nTCTipp~~---ly~~le~l 190 (358)
T 2b0j_A 128 GLKVTSDDREAVEGADIVITWLP--KGN------------KQPDIIKKFADAIPEGAIVTHACTIPTTK---FAKIFKDL 190 (358)
T ss_dssp TCEEESCHHHHHTTCSEEEECCT--TCT------------THHHHHHHHGGGSCTTCEEEECSSSCHHH---HHHHHHHT
T ss_pred CcEeecchHHHhcCCCEEEEecC--CCC------------CcHHHHHHHHhhCcCCCEEecccCCCHHH---HHHHHHHh
Confidence 46788888889999999999965 432 12678899999999999999999998754 34444443
Q ss_pred cCCCceEEe-eCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEe
Q 017997 145 SKGIKFQIL-SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT 206 (362)
Q Consensus 145 ~~g~~~~v~-~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 206 (362)
.+ .|+.+. |+|- ..||..- +..+|.. -.+++..+++.+|-++.. +..+..
T Consensus 191 ~R-~DvgIsS~HPa-aVPgt~G-------q~~~g~~--yAtEEqIeklveLaksa~-k~ay~v 241 (358)
T 2b0j_A 191 GR-EDLNITSYHPG-CVPEMKG-------QVYIAEG--YASEEAVNKLYEIGKIAR-GKAFKM 241 (358)
T ss_dssp TC-TTSEEEECBCS-SCTTTCC-------CEEEEES--SSCHHHHHHHHHHHHHHH-SCEEEE
T ss_pred Cc-ccCCeeccCCC-CCCCCCC-------ccccccc--cCCHHHHHHHHHHHHHhC-CCeEec
Confidence 22 344443 6774 4466531 2345532 235889999999998876 345543
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0012 Score=61.05 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=47.6
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
+|+|.|.| .|++|..++..|++. |++|+++++++++.+.+.+....+.. +.+.-..+..++++++
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~l~~~~~~~~~------------~Dl~d~~~~~~~~~~~ 78 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAA--GHDLVLIHRPSSQIQRLAYLEPECRV------------AEMLDHAGLERALRGL 78 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECTTSCGGGGGGGCCEEEE------------CCTTCHHHHHHHTTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEecChHhhhhhccCCeEEEE------------ecCCCHHHHHHHHcCC
Confidence 37999999 599999999999999 99999999987654433321110000 1111011234567789
Q ss_pred cEEEEecc
Q 017997 80 DIVFVSVN 87 (362)
Q Consensus 80 DvVii~vp 87 (362)
|+||-+..
T Consensus 79 d~vih~a~ 86 (342)
T 2x4g_A 79 DGVIFSAG 86 (342)
T ss_dssp SEEEEC--
T ss_pred CEEEECCc
Confidence 99998875
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0035 Score=61.94 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=32.8
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~ 38 (362)
+|||.|.| .|++|..++..|++. |++|+++++++.+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~--G~~V~~l~R~~~~ 183 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTG--GHEVIQLVRKEPK 183 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESSSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCCCC
Confidence 58999999 699999999999999 9999999998653
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.019 Score=52.49 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=65.3
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--C
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (362)
.+|.|+|+ |.+|..++..+.+. |++ .++.+||.+. +. . ...+.+..+++++.+ .
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~--g~~-~v~~VnP~~~-----g~-~--------------i~G~~vy~sl~el~~~~~ 70 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEY--GTK-VVAGVTPGKG-----GS-E--------------VHGVPVYDSVKEALAEHP 70 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--TCE-EEEEECTTCT-----TC-E--------------ETTEEEESSHHHHHHHCT
T ss_pred CEEEEECCCCCHHHHHHHHHHhC--CCc-EEEEeCCCCC-----Cc-e--------------ECCEeeeCCHHHHhhcCC
Confidence 36888898 99999999999888 898 5566665421 00 0 013667788888665 4
Q ss_pred -CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 79 -ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 79 -aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
+|++++++|.+ ...+++++..+. ....+|+.++.++....+++.+..++.
T Consensus 71 ~~DvaIi~vp~~---------------~~~~~v~ea~~~-Gi~~vVi~t~G~~~~~~~~l~~~A~~~ 121 (297)
T 2yv2_A 71 EINTSIVFVPAP---------------FAPDAVYEAVDA-GIRLVVVITEGIPVHDTMRFVNYARQK 121 (297)
T ss_dssp TCCEEEECCCGG---------------GHHHHHHHHHHT-TCSEEEECCCCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCHH---------------HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 99999998743 234555555543 233355544446543344666665554
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.03 Score=48.89 Aligned_cols=66 Identities=18% Similarity=0.324 Sum_probs=45.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH-HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe---cCHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS---TDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~-~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t---~d~~~a~~ 77 (362)
++|.|||.|.+|..-+..|.+. |.+|++++.+. +.++.+.+. +++++. -+.+ .+.
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~--GA~VtVvap~~~~~l~~l~~~------------------~~i~~i~~~~~~~-dL~ 90 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQE--GAAITVVAPTVSAEINEWEAK------------------GQLRVKRKKVGEE-DLL 90 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGG--CCCEEEECSSCCHHHHHHHHT------------------TSCEEECSCCCGG-GSS
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHc------------------CCcEEEECCCCHh-HhC
Confidence 5799999999999999999999 99999998753 233443321 112211 1122 378
Q ss_pred CCcEEEEeccC
Q 017997 78 EADIVFVSVNT 88 (362)
Q Consensus 78 ~aDvVii~vpt 88 (362)
++|+||.|+..
T Consensus 91 ~adLVIaAT~d 101 (223)
T 3dfz_A 91 NVFFIVVATND 101 (223)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 99999999653
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0021 Score=60.03 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=26.8
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcC-CCCeEEEEe
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKC-PSIEVAVVD 33 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~-~G~~V~~~d 33 (362)
||||+|+| .|++|.-+...|.++. |.++++.+.
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~ 37 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLA 37 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 58999999 9999999999888762 356677765
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0027 Score=58.25 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=48.9
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCH------HHHHHHH---cCCCCCCCCChHHHHhhhcCCCEEEec
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV------SRINAWN---SDQLPIYEPGLDGVVKQCRGKNLFFST 70 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~------~~~~~l~---~~~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (362)
||+|.|.|. |.+|..++..|++. |++|++++|++ ++.+.+. .....+.. +.+.-.+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~------------~D~~d~~ 69 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSF--SHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIE------------GEMEEHE 69 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHT--TCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEE------------CCTTCHH
T ss_pred ccEEEEEcCCchhHHHHHHHHHhC--CCcEEEEECCcccccChHHHHHHHHhhcCCcEEEE------------ecCCCHH
Confidence 578999995 99999999999998 99999999985 3433332 11111100 0111112
Q ss_pred CHHhhhcCCcEEEEecc
Q 017997 71 DVEKHVSEADIVFVSVN 87 (362)
Q Consensus 71 d~~~a~~~aDvVii~vp 87 (362)
++.++++++|+||.+.+
T Consensus 70 ~l~~a~~~~d~vi~~a~ 86 (321)
T 3c1o_A 70 KMVSVLKQVDIVISALP 86 (321)
T ss_dssp HHHHHHTTCSEEEECCC
T ss_pred HHHHHHcCCCEEEECCC
Confidence 34556789999999875
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0048 Score=56.13 Aligned_cols=108 Identities=17% Similarity=0.225 Sum_probs=65.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+++.|+|+|.+|.++|..|++. | +|++++|++++.+.+.+.. .........-.+..+ +..+.+.++|+
T Consensus 129 k~vlV~GaGgiG~aia~~L~~~--G-~V~v~~r~~~~~~~l~~~~--------~~~~~~~~~~~~d~~-~~~~~~~~~Di 196 (287)
T 1nvt_A 129 KNIVIYGAGGAARAVAFELAKD--N-NIIIANRTVEKAEALAKEI--------AEKLNKKFGEEVKFS-GLDVDLDGVDI 196 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHTSS--S-EEEEECSSHHHHHHHHHHH--------HHHHTCCHHHHEEEE-CTTCCCTTCCE
T ss_pred CEEEEECchHHHHHHHHHHHHC--C-CEEEEECCHHHHHHHHHHH--------hhhcccccceeEEEe-eHHHhhCCCCE
Confidence 4799999999999999999999 9 9999999998887765310 000000000012232 23344788999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
+|-|+|.+...+ .+...+. -...++++.+|++.++.|..|
T Consensus 197 lVn~ag~~~~~~-------~~~~~~~-----~~~~l~~~~~v~Dv~y~p~~t 236 (287)
T 1nvt_A 197 IINATPIGMYPN-------IDVEPIV-----KAEKLREDMVVMDLIYNPLET 236 (287)
T ss_dssp EEECSCTTCTTC-------CSSCCSS-----CSTTCCSSSEEEECCCSSSSC
T ss_pred EEECCCCCCCCC-------CCCCCCC-----CHHHcCCCCEEEEeeeCCccC
Confidence 999987543210 0000000 013456788888877755433
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0028 Score=58.93 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=49.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHhhhcCCCEEEecCHHhh-hcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEKH-VSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a-~~~ 78 (362)
++|.|+|+|.+|..++..|.+. |+ |+++|+|+++++ +++...+.. ++...+ .+.++ +++
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~--g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~--------------~L~~a~i~~ 177 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGS--EV-FVLAEDENVRKK-VLRSGANFVHGDPTRVS--------------DLEKANVRG 177 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGS--CE-EEEESCGGGHHH-HHHTTCEEEESCTTSHH--------------HHHHTCSTT
T ss_pred CCEEEECCcHHHHHHHHHHHhC--Cc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHH--------------HHHhcChhh
Confidence 4799999999999999999988 89 999999999998 765322211 111111 12223 678
Q ss_pred CcEEEEecc
Q 017997 79 ADIVFVSVN 87 (362)
Q Consensus 79 aDvVii~vp 87 (362)
||.++++++
T Consensus 178 a~~vi~~~~ 186 (336)
T 1lnq_A 178 ARAVIVDLE 186 (336)
T ss_dssp EEEEEECCS
T ss_pred ccEEEEcCC
Confidence 999999975
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0022 Score=60.36 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=25.7
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
+||+|+| .||+|.-+...|.++ |..++..+..
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-P~~el~~l~S 40 (359)
T 4dpl_A 8 LKAAILGATGLVGIEYVRMLSNH-PYIKPAYLAG 40 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-SSEEEEEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-CCceEEEEEC
Confidence 4899999 699999999988765 5667776643
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0022 Score=60.36 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=25.7
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
+||+|+| .||+|.-+...|.++ |..++..+..
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-P~~el~~l~S 40 (359)
T 4dpk_A 8 LKAAILGATGLVGIEYVRMLSNH-PYIKPAYLAG 40 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-SSEEEEEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-CCceEEEEEC
Confidence 4899999 699999999988765 5667776643
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0089 Score=55.92 Aligned_cols=94 Identities=16% Similarity=0.264 Sum_probs=57.6
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-cCHHhhhcC
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~ 78 (362)
|.||+||| .||+|.-+.+.|.++ |..++..+.-....=+.+ .+...... ..+.+. .+.++...+
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~h-P~~el~~l~S~~~aG~~~------------~~~~p~~~-~~l~~~~~~~~~~~~~ 78 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNH-PEAKITYLSSRTYAGKKL------------EEIFPSTL-ENSILSEFDPEKVSKN 78 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-TTEEEEEEECSTTTTSBH------------HHHCGGGC-CCCBCBCCCHHHHHHH
T ss_pred eeEEEEECCCCHHHHHHHHHHHcC-CCcEEEEEeCcccccCCh------------HHhChhhc-cCceEEeCCHHHhhcC
Confidence 56999998 599999999999987 567877776432110011 11100000 112222 244443378
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
+|++|+|+|.. +..++.+.+ .+..||+-|+
T Consensus 79 ~Dvvf~alp~~-------------------~s~~~~~~~-~g~~VIDlSs 108 (351)
T 1vkn_A 79 CDVLFTALPAG-------------------ASYDLVREL-KGVKIIDLGA 108 (351)
T ss_dssp CSEEEECCSTT-------------------HHHHHHTTC-CSCEEEESSS
T ss_pred CCEEEECCCcH-------------------HHHHHHHHh-CCCEEEECCh
Confidence 99999998732 344556666 7888998776
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0046 Score=58.24 Aligned_cols=33 Identities=24% Similarity=0.607 Sum_probs=27.1
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
+||+|+| .|++|..+.+.|.++ |..+++.+...
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~-p~~elvai~~~ 50 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANH-PHFQVTLMTAD 50 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTC-SSEEEEEEBCS
T ss_pred cEEEEECcCCHHHHHHHHHHHcC-CCcEEEEEeCc
Confidence 5899999 899999999999876 45688777543
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0045 Score=55.56 Aligned_cols=74 Identities=9% Similarity=0.192 Sum_probs=47.8
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+|.|.|+ |.+|..++..|++..+|++|+++++++++.+.+......+.. +.+.-.++..++++++|+
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~------------~D~~d~~~~~~~~~~~d~ 68 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQ------------ADYGDEAALTSALQGVEK 68 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEE------------CCTTCHHHHHHHTTTCSE
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEE------------cCCCCHHHHHHHHhCCCE
Confidence 5889996 999999999998753379999999988766555432111100 111111224456788999
Q ss_pred EEEeccC
Q 017997 82 VFVSVNT 88 (362)
Q Consensus 82 Vii~vpt 88 (362)
||-+...
T Consensus 69 vi~~a~~ 75 (286)
T 2zcu_A 69 LLLISSS 75 (286)
T ss_dssp EEECC--
T ss_pred EEEeCCC
Confidence 9988653
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.058 Score=53.31 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=67.6
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~~~G~~V~~~d~~~--~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
++|-|||.|..|.+ +|..|.+. |++|+++|.+. ...+.|++...+ +..-.+.+....+
T Consensus 20 ~~i~~iGiGg~Gms~lA~~l~~~--G~~V~~sD~~~~~~~~~~L~~~gi~-----------------~~~G~~~~~~~~~ 80 (524)
T 3hn7_A 20 MHIHILGICGTFMGSLALLARAL--GHTVTGSDANIYPPMSTQLEQAGVT-----------------IEEGYLIAHLQPA 80 (524)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCCCTTHHHHHHHTTCE-----------------EEESCCGGGGCSC
T ss_pred CEEEEEEecHhhHHHHHHHHHhC--CCEEEEECCCCCcHHHHHHHHCCCE-----------------EECCCCHHHcCCC
Confidence 68999999999997 67777888 99999999863 334445432111 2222334442357
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH---------H-HHhhc-CCCCEEEEeeCCccccHHH-HHHHHHhc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------V-IADVS-KSDKIVVEKSTVPVKTAEA-IEKILTHN 144 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~---------~-i~~~l-~~~~iVv~~STv~~gt~~~-l~~~l~~~ 144 (362)
+|+||++-.-|.+ .| .+..+.+ + +...+ +...+|.++.|..-.||.. +..+|++.
T Consensus 81 ~d~vV~Spgi~~~--------~p---~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~ 147 (524)
T 3hn7_A 81 PDLVVVGNAMKRG--------MD---VIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYA 147 (524)
T ss_dssp CSEEEECTTCCTT--------SH---HHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred CCEEEECCCcCCC--------CH---HHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHc
Confidence 8999887433321 22 2333322 1 23322 3446777778876666654 56677654
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0029 Score=58.83 Aligned_cols=72 Identities=18% Similarity=0.165 Sum_probs=48.7
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCH----HHHHHHH---cCCCCCCCCChHHHHhhhcCCCEEEecCHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV----SRINAWN---SDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~----~~~~~l~---~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (362)
|+|.|.|+ |++|..++..|++. |++|++++|++ ++.+.+. .....+.. +.+.-..++.
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~--g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~------------~Dl~d~~~l~ 76 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDA--HRPTYILARPGPRSPSKAKIFKALEDKGAIIVY------------GLINEQEAME 76 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHT--TCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEE------------CCTTCHHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHC--CCCEEEEECCCCCChhHHHHHHHHHhCCcEEEE------------eecCCHHHHH
Confidence 68999997 99999999999999 89999999976 5554332 21111110 1111112344
Q ss_pred hhhc--CCcEEEEecc
Q 017997 74 KHVS--EADIVFVSVN 87 (362)
Q Consensus 74 ~a~~--~aDvVii~vp 87 (362)
++++ ++|+||-+.+
T Consensus 77 ~~~~~~~~d~Vi~~a~ 92 (346)
T 3i6i_A 77 KILKEHEIDIVVSTVG 92 (346)
T ss_dssp HHHHHTTCCEEEECCC
T ss_pred HHHhhCCCCEEEECCc
Confidence 5667 9999999975
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.025 Score=52.94 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=29.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCC-eEEEEeCC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSI-EVAVVDIS 35 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~-~V~~~d~~ 35 (362)
|||.|.| .|++|..++..|++. |+ +|+..|++
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~--g~~~v~~~d~~ 34 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTST--TDHHIFEVHRQ 34 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--CCCEEEECCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCCEEEEECCC
Confidence 7999999 699999999999999 88 99999984
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0014 Score=56.88 Aligned_cols=69 Identities=10% Similarity=0.330 Sum_probs=44.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHH-HHHH-HHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc-
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVS-RINA-WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~-~d~~~~-~~~~-l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (362)
.+|+|+|+|.+|..++..+.....|+++++ +|.|++ ++.. .-.| .| +.-.+++++.++
T Consensus 85 ~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~G-vp-----------------V~~~~dL~~~v~~ 146 (212)
T 3keo_A 85 TNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDG-IP-----------------VYGISTINDHLID 146 (212)
T ss_dssp EEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTC-CB-----------------EEEGGGHHHHC-C
T ss_pred CEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECC-eE-----------------EeCHHHHHHHHHH
Confidence 479999999999999887421112777665 599987 5432 1111 12 222355666554
Q ss_pred -CCcEEEEeccC
Q 017997 78 -EADIVFVSVNT 88 (362)
Q Consensus 78 -~aDvVii~vpt 88 (362)
+.|.+++|+|+
T Consensus 147 ~~Id~vIIAvPs 158 (212)
T 3keo_A 147 SDIETAILTVPS 158 (212)
T ss_dssp CSCCEEEECSCG
T ss_pred cCCCEEEEecCc
Confidence 68999999874
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.021 Score=51.40 Aligned_cols=55 Identities=24% Similarity=0.411 Sum_probs=43.0
Q ss_pred ceEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.++.|||.|. +|.++|..|...+.|.+|+++++. +.++.+.+++||
T Consensus 159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~---------------------------------t~~L~~~~~~AD 205 (281)
T 2c2x_A 159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTG---------------------------------TRDLPALTRQAD 205 (281)
T ss_dssp CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTT---------------------------------CSCHHHHHTTCS
T ss_pred CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECc---------------------------------hhHHHHHHhhCC
Confidence 4799999997 599999999876214789988642 135666789999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.+++.|
T Consensus 206 IVI~Avg~p 214 (281)
T 2c2x_A 206 IVVAAVGVA 214 (281)
T ss_dssp EEEECSCCT
T ss_pred EEEECCCCC
Confidence 999999876
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0061 Score=55.80 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=47.2
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHH---HHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVS-RINA---WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~-~~~~---l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
+|.|.|+ |.+|..++..|++. |++|++++|+++ +.+. +......+.. +.+.-.+++.++++
T Consensus 13 ~ilVtGatG~iG~~l~~~L~~~--g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~------------~Dl~d~~~l~~a~~ 78 (318)
T 2r6j_A 13 KILIFGGTGYIGNHMVKGSLKL--GHPTYVFTRPNSSKTTLLDEFQSLGAIIVK------------GELDEHEKLVELMK 78 (318)
T ss_dssp CEEEETTTSTTHHHHHHHHHHT--TCCEEEEECTTCSCHHHHHHHHHTTCEEEE------------CCTTCHHHHHHHHT
T ss_pred eEEEECCCchHHHHHHHHHHHC--CCcEEEEECCCCchhhHHHHhhcCCCEEEE------------ecCCCHHHHHHHHc
Confidence 8999995 99999999999999 999999999864 3322 2221111100 01111123455678
Q ss_pred CCcEEEEecc
Q 017997 78 EADIVFVSVN 87 (362)
Q Consensus 78 ~aDvVii~vp 87 (362)
++|+||.+.+
T Consensus 79 ~~d~vi~~a~ 88 (318)
T 2r6j_A 79 KVDVVISALA 88 (318)
T ss_dssp TCSEEEECCC
T ss_pred CCCEEEECCc
Confidence 9999999875
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.046 Score=50.13 Aligned_cols=103 Identities=14% Similarity=0.075 Sum_probs=64.4
Q ss_pred eEEEE-cC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--C
Q 017997 3 KICCI-GA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (362)
Q Consensus 3 kI~VI-Gl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (362)
+|+|| |+ |.+|...+..|.+. |++ .++++||.+.. + . ...+.+..+++++.+ .
T Consensus 15 siaVV~Gasg~~G~~~~~~l~~~--G~~-~v~~VnP~~~g---~---~--------------i~G~~vy~sl~el~~~~~ 71 (305)
T 2fp4_A 15 TKVICQGFTGKQGTFHSQQALEY--GTN-LVGGTTPGKGG---K---T--------------HLGLPVFNTVKEAKEQTG 71 (305)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--TCE-EEEEECTTCTT---C---E--------------ETTEEEESSHHHHHHHHC
T ss_pred cEEEEECCCCCHHHHHHHHHHHC--CCc-EEEEeCCCcCc---c---e--------------ECCeeeechHHHhhhcCC
Confidence 58888 98 99999999999988 898 55677664210 0 0 013666777888777 8
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
.|++++++|.+ ...+++++..+. .-..+|+..+.++....+++.+..++.
T Consensus 72 vD~avI~vP~~---------------~~~~~~~e~i~~-Gi~~iv~~t~G~~~~~~~~l~~~a~~~ 121 (305)
T 2fp4_A 72 ATASVIYVPPP---------------FAAAAINEAIDA-EVPLVVCITEGIPQQDMVRVKHRLLRQ 121 (305)
T ss_dssp CCEEEECCCHH---------------HHHHHHHHHHHT-TCSEEEECCCCCCHHHHHHHHHHHTTC
T ss_pred CCEEEEecCHH---------------HHHHHHHHHHHC-CCCEEEEECCCCChHHHHHHHHHHHhc
Confidence 99999998842 345555555543 234445543333322222555555554
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0087 Score=55.65 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=31.3
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eC-CHHHHHHHH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DI-SVSRINAWN 43 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~-~~~~~~~l~ 43 (362)
|+||+|+|.|++|.-+.+.|.++ |..+|+++ |+ +++....+-
T Consensus 1 mikVgI~G~G~iGr~l~R~l~~~-~~veivain~~~~~~~~~~ll 44 (334)
T 3cmc_O 1 AVKVGINGFGRIGRNVFRAALKN-PDIEVVAVNDLTDANTLAHLL 44 (334)
T ss_dssp CEEEEEESCSHHHHHHHHHHTTC-TTEEEEEEECSSCHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhCC-CCeEEEEEeCCCCHHHHHHHh
Confidence 78999999999999999888765 46677766 43 455554443
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0069 Score=56.80 Aligned_cols=31 Identities=19% Similarity=0.544 Sum_probs=25.9
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCC------CeEEEEe
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPS------IEVAVVD 33 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G------~~V~~~d 33 (362)
||||+|+| .|++|..+...|.++ + ++++.+.
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~--~~~~~~~~ei~~l~ 46 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGH--PAYADGRLRIGALT 46 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC--HHHHTTSEEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC--CCCCCccEEEEEEE
Confidence 46999999 999999999999877 4 4677764
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.027 Score=51.87 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=29.9
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
||+|.|.| .|++|..++..|++. |++|+++|++
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r~ 34 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQ--GIDLIVFDNL 34 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhC--CCEEEEEeCC
Confidence 78999999 699999999999998 9999999974
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.088 Score=47.95 Aligned_cols=97 Identities=13% Similarity=0.093 Sum_probs=62.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhh-hcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKH-VSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a-~~~a 79 (362)
++|..||+|..|.+ +..+++. +|.+|+++|++++.++..++. .++....++++ ..|..+. -...
T Consensus 124 ~rVLDIGcG~G~~t-a~~lA~~-~ga~V~gIDis~~~l~~Ar~~------------~~~~gl~~v~~v~gDa~~l~d~~F 189 (298)
T 3fpf_A 124 ERAVFIGGGPLPLT-GILLSHV-YGMRVNVVEIEPDIAELSRKV------------IEGLGVDGVNVITGDETVIDGLEF 189 (298)
T ss_dssp CEEEEECCCSSCHH-HHHHHHT-TCCEEEEEESSHHHHHHHHHH------------HHHHTCCSEEEEESCGGGGGGCCC
T ss_pred CEEEEECCCccHHH-HHHHHHc-cCCEEEEEECCHHHHHHHHHH------------HHhcCCCCeEEEECchhhCCCCCc
Confidence 58999999987653 3334553 388999999999999876642 11100124444 2333331 2468
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEee
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~S 127 (362)
|+|+++...+ | ...+++.+.+.+++|..++...
T Consensus 190 DvV~~~a~~~------------d---~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 190 DVLMVAALAE------------P---KRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp SEEEECTTCS------------C---HHHHHHHHHHHCCTTCEEEEEE
T ss_pred CEEEECCCcc------------C---HHHHHHHHHHHcCCCcEEEEEc
Confidence 9999864311 1 2678889999999988776544
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.022 Score=53.38 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=32.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~ 38 (362)
.+|+|+|.|.+|..+|..+... |.+|+++|+++++
T Consensus 176 ktV~I~G~GnVG~~~A~~l~~~--GakVvvsD~~~~~ 210 (355)
T 1c1d_A 176 LTVLVQGLGAVGGSLASLAAEA--GAQLLVADTDTER 210 (355)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEEeCCccH
Confidence 4799999999999999999988 9999999999775
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.028 Score=51.68 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=51.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCC---HHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe--cCH---
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS---VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS--TDV--- 72 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~---~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t--~d~--- 72 (362)
.++.|+|+|.+|.+++..|++. |. +|++++|+ .++.+++.+. + .......+... .+.
T Consensus 149 k~~lVlGAGGaaraia~~L~~~--G~~~v~v~nRt~~~~~~a~~la~~-----------~-~~~~~~~v~~~~~~~l~~~ 214 (312)
T 3t4e_A 149 KTMVLLGAGGAATAIGAQAAIE--GIKEIKLFNRKDDFFEKAVAFAKR-----------V-NENTDCVVTVTDLADQHAF 214 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCSEEEEEECSSTHHHHHHHHHHH-----------H-HHHSSCEEEEEETTCHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCCEEEEEECCCchHHHHHHHHHH-----------h-hhccCcceEEechHhhhhh
Confidence 4789999999999999999998 87 89999999 8887776541 0 00001112222 232
Q ss_pred HhhhcCCcEEEEeccCC
Q 017997 73 EKHVSEADIVFVSVNTP 89 (362)
Q Consensus 73 ~~a~~~aDvVii~vptp 89 (362)
.+.+.++|+||-|+|..
T Consensus 215 ~~~l~~~DiIINaTp~G 231 (312)
T 3t4e_A 215 TEALASADILTNGTKVG 231 (312)
T ss_dssp HHHHHHCSEEEECSSTT
T ss_pred HhhccCceEEEECCcCC
Confidence 34578899999997754
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0057 Score=53.11 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=30.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.|+|||+|..|++.|..|+++ |++|+++|.++
T Consensus 4 dV~IIGaGpaGL~aA~~La~~--G~~V~v~Ek~~ 35 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAA--GHQVHLFDKSR 35 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCCEEEEECCC
Confidence 599999999999999999999 99999999864
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0079 Score=54.52 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=48.2
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCC-CeEEEEeCCHHHH--HHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPS-IEVAVVDISVSRI--NAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G-~~V~~~d~~~~~~--~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
|+|.|.|+ |.+|..++..|++. | ++|++++|++++. +.+......+.. +.+.-.+++.++++
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~--g~~~V~~~~R~~~~~~~~~l~~~~~~~~~------------~D~~d~~~l~~~~~ 71 (299)
T 2wm3_A 6 KLVVVFGGTGAQGGSVARTLLED--GTFKVRVVTRNPRKKAAKELRLQGAEVVQ------------GDQDDQVIMELALN 71 (299)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--CSSEEEEEESCTTSHHHHHHHHTTCEEEE------------CCTTCHHHHHHHHT
T ss_pred CEEEEECCCchHHHHHHHHHHhc--CCceEEEEEcCCCCHHHHHHHHCCCEEEE------------ecCCCHHHHHHHHh
Confidence 58999997 99999999999998 7 9999999987653 233221111100 01111122445678
Q ss_pred CCcEEEEecc
Q 017997 78 EADIVFVSVN 87 (362)
Q Consensus 78 ~aDvVii~vp 87 (362)
++|+||.+.+
T Consensus 72 ~~d~vi~~a~ 81 (299)
T 2wm3_A 72 GAYATFIVTN 81 (299)
T ss_dssp TCSEEEECCC
T ss_pred cCCEEEEeCC
Confidence 9999999864
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.011 Score=55.35 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=26.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEe
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVD 33 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d 33 (362)
|+||+|+|.|++|.-+.+.|.++ |..+|+.+.
T Consensus 17 ~ikVgI~G~G~iGr~llR~l~~~-p~veivain 48 (354)
T 3cps_A 17 QGTLGINGFGRIGRLVLRACMER-NDITVVAIN 48 (354)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTC-SSCEEEEEE
T ss_pred ceEEEEECCCHHHHHHHHHHHcC-CCeEEEEec
Confidence 46999999999999999988875 567877775
|
| >3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.012 Score=55.62 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=53.3
Q ss_pred ceEEEEcCChhHH-HHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCC-CCCCCChHHHHhhhcCCCEEEe-c---CHHhh
Q 017997 2 VKICCIGAGYVGG-PTMAVIALKCPSIEVAVVDISVSRINAWNSDQL-PIYEPGLDGVVKQCRGKNLFFS-T---DVEKH 75 (362)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~-~~~e~~l~~~~~~~~~~~l~~t-~---d~~~a 75 (362)
||+..+|+|.+|. -++..|.+. |++|+..|+|+..+++|++.+. .+...+.+.....+ .+++.. + +.-++
T Consensus 1 mkavhfGaGniGRGfig~~l~~~--g~~v~f~dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v--~~v~ai~s~~~~~~~~ 76 (382)
T 3h2z_A 1 MKALHFGAGNIGRGFIGKLLADA--GIQLTFADVNQVVLDALNARHSYQVHVVGETEQVDTV--SGVNAVSSIGDDVVDL 76 (382)
T ss_dssp CEEEEECCSHHHHHTHHHHHHHT--TCEEEEEESCHHHHHHHHHHSEEEEEEESSSEEEEEE--ESCEEEETTSSHHHHH
T ss_pred CcEEEECCCccchhhHHHHHHHc--CCeEEEEeCCHHHHHHHhcCCCEEEEEccCCcceEEE--EEEEEEeCcHHHHHHH
Confidence 8999999999995 455666677 9999999999999999997432 22222221111100 122221 1 23335
Q ss_pred hcCCcEEEEecc
Q 017997 76 VSEADIVFVSVN 87 (362)
Q Consensus 76 ~~~aDvVii~vp 87 (362)
+.++|+|..+++
T Consensus 77 i~~adlitT~vG 88 (382)
T 3h2z_A 77 IAQVDLVTTAVG 88 (382)
T ss_dssp HTTCSEEEECCC
T ss_pred HcCCCEEEECCC
Confidence 789999988876
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0058 Score=56.87 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=45.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC------CCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCE-EEec---
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC------PSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNL-FFST--- 70 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~------~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l-~~t~--- 70 (362)
+||+|||+|.||..++..+.+.. .+.+|+ ++|+++++.+.. ..+++.......+.+ .+++
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 77 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNER---------IDIGKVISYKEKGSLDSLEYESI 77 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTT---------CCHHHHHHHHHTTCGGGCCSEEC
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcc---------cChHHHhhhhccCCcccccCCCC
Confidence 58999999999999999987641 024554 457775443210 001111110001112 1334
Q ss_pred CHHhhh-cCCcEEEEeccCC
Q 017997 71 DVEKHV-SEADIVFVSVNTP 89 (362)
Q Consensus 71 d~~~a~-~~aDvVii~vptp 89 (362)
|+++.+ .+.|+|++|+|+.
T Consensus 78 d~~~ll~~~iDvVv~~t~~~ 97 (331)
T 3c8m_A 78 SASEALARDFDIVVDATPAS 97 (331)
T ss_dssp CHHHHHHSSCSEEEECSCCC
T ss_pred CHHHHhCCCCCEEEECCCCC
Confidence 777755 4689999998753
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.023 Score=51.59 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=32.0
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~ 38 (362)
|||.|.|+ |++|..++..|++. |++|++++++++.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~ 36 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVEL--GYEVVVVDNLSSG 36 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEECCCSSC
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCEEEEEeCCCCC
Confidence 79999997 99999999999999 9999999987654
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.078 Score=51.66 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=66.2
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~~~G~~V~~~d~~~~~-~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
++|.|||+|..|.+ +|..|.+. |++|+++|..... .+.+.+.... +..-.+.. .++++
T Consensus 19 ~~i~viG~G~sG~s~~A~~l~~~--G~~V~~~D~~~~~~~~~l~~~gi~-----------------~~~g~~~~-~~~~a 78 (475)
T 1p3d_A 19 QQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVVTQRLAQAGAK-----------------IYIGHAEE-HIEGA 78 (475)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHHHHHHHHTTCE-----------------EEESCCGG-GGTTC
T ss_pred CEEEEEeecHHHHHHHHHHHHhC--CCEEEEECCCCCHHHHHHHhCCCE-----------------EECCCCHH-HcCCC
Confidence 58999999999997 99999998 9999999986432 2333321111 11112333 36789
Q ss_pred cEEEEeccCCCCCCCCC---CCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH-HHHHHHHhc
Q 017997 80 DIVFVSVNTPTKTQGLG---AGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE-AIEKILTHN 144 (362)
Q Consensus 80 DvVii~vptp~~~~g~~---~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~-~l~~~l~~~ 144 (362)
|+||+.-.-|.+..-.. +...+-++ ..+.+...++...+|-++.|..=+||. .+..+|.+.
T Consensus 79 ~~vv~s~~i~~~~~~~~~a~~~~i~vl~----~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 143 (475)
T 1p3d_A 79 SVVVVSSAIKDDNPELVTSKQKRIPVIQ----RAQMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQA 143 (475)
T ss_dssp SEEEECTTSCTTCHHHHHHHHTTCCEEE----HHHHHHHHHHTSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCCCHHHHHHHHcCCcEEE----HHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 98888733221100000 00001111 112233333334677777887666665 456777654
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0041 Score=58.70 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=32.4
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~ 38 (362)
||+|.|.|. |++|..++..|++. |++|+++++++..
T Consensus 29 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~ 65 (379)
T 2c5a_A 29 NLKISITGAGGFIASHIARRLKHE--GHYVIASDWKKNE 65 (379)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCCS
T ss_pred CCeEEEECCccHHHHHHHHHHHHC--CCeEEEEECCCcc
Confidence 579999997 99999999999999 9999999997543
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.099 Score=51.15 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=66.8
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~~~G~~V~~~d~~~~~-~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
++|.|||+|..|.+ +|..|.+. |++|+++|..... .+.+.+.... +..-.+.+ .++++
T Consensus 20 ~~v~viGiG~sG~s~~A~~l~~~--G~~V~~~D~~~~~~~~~l~~~gi~-----------------~~~g~~~~-~~~~a 79 (491)
T 2f00_A 20 RHIHFVGIGGAGMGGIAEVLANE--GYQISGSDLAPNPVTQQLMNLGAT-----------------IYFNHRPE-NVRDA 79 (491)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHT--TCEEEEECSSCCHHHHHHHHTTCE-----------------EESSCCGG-GGTTC
T ss_pred CEEEEEEcCHHHHHHHHHHHHhC--CCeEEEECCCCCHHHHHHHHCCCE-----------------EECCCCHH-HcCCC
Confidence 68999999999997 99999998 9999999986432 2334332111 11112233 36789
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHH-------HHHHHHHHHhhcCCCCEEEEeeCCccccHH-HHHHHHHhc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTY-------WESAARVIADVSKSDKIVVEKSTVPVKTAE-AIEKILTHN 144 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~-------l~~~~~~i~~~l~~~~iVv~~STv~~gt~~-~l~~~l~~~ 144 (362)
|+||+.-.-|.+ .+.+.. +....+.+...++...+|-++.|..=+||. .+..+|.+.
T Consensus 80 ~~vv~s~~i~~~--------~p~~~~a~~~~ipvl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~ 144 (491)
T 2f00_A 80 SVVVVSSAISAD--------NPEIVAAHEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEA 144 (491)
T ss_dssp SEEEECTTCCTT--------CHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCC--------CHHHHHHHHcCCcEEEHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 998887332211 110000 011122333444444677777887666665 456777654
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.082 Score=49.26 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=32.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRI 39 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~ 39 (362)
|+|.|.| .|.+|..++..|++. |++|++++|++++.
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~ 42 (352)
T 1xgk_A 6 KTIAVVGATGRQGASLIRVAAAV--GHHVRAQVHSLKGL 42 (352)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT--TCCEEEEESCSCSH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCCChh
Confidence 6799999 599999999999998 99999999987654
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0087 Score=55.47 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=33.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCC----HHHHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS----VSRINAWN 43 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~----~~~~~~l~ 43 (362)
|+|.|.| .|++|..++..|.+. |++|++++++ .+.++.+.
T Consensus 26 ~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~ 70 (351)
T 3ruf_A 26 KTWLITGVAGFIGSNLLEKLLKL--NQVVIGLDNFSTGHQYNLDEVK 70 (351)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSSCCHHHHHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCCCCchhhhhhhh
Confidence 7899999 599999999999999 9999999994 34444443
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.014 Score=54.94 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=59.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCC----HHH----HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS----VSR----INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDV 72 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~----~~~----~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~ 72 (362)
.||.|+|+|.+|..+|..|... |. +|+++|++ .++ ++.+++ .+.++ . .......++
T Consensus 193 ~kVVv~GAGaAG~~iAkll~~~--G~~~I~v~Dr~Gli~~~R~~~~L~~~k~-----------~~A~~-~-~~~~~~~~L 257 (388)
T 1vl6_A 193 VKVVVNGIGAAGYNIVKFLLDL--GVKNVVAVDRKGILNENDPETCLNEYHL-----------EIARI-T-NPERLSGDL 257 (388)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCEEEEEETTEECCTTSGGGCSSHHHH-----------HHHHT-S-CTTCCCSCH
T ss_pred cEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECCCcccCCCcccccCHHHH-----------HHHHh-h-hccCchhhH
Confidence 4899999999999999999998 77 89999997 433 111110 11111 0 011123568
Q ss_pred HhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 73 ~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
.++++++|++|=+.. |.-. . ++ +.+.+.++.+|+..|.
T Consensus 258 ~eav~~ADVlIG~Sa-p~l~---------t----~e----mVk~Ma~~pIIfalSN 295 (388)
T 1vl6_A 258 ETALEGADFFIGVSR-GNIL---------K----PE----WIKKMSRKPVIFALAN 295 (388)
T ss_dssp HHHHTTCSEEEECSC-SSCS---------C----HH----HHTTSCSSCEEEECCS
T ss_pred HHHHccCCEEEEeCC-CCcc---------C----HH----HHHhcCCCCEEEEcCC
Confidence 899999999888754 4211 1 33 3333556778877665
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.14 Score=42.00 Aligned_cols=113 Identities=13% Similarity=0.175 Sum_probs=66.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh----c
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV----S 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~----~ 77 (362)
++|.-+|+|. |. ++..+++..++.+|+++|++++.++..++... +.++ ..++.+..|..+.+ .
T Consensus 27 ~~vldiG~G~-G~-~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~--------~~~~~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 27 ETLWDIGGGS-GS-IAIEWLRSTPQTTAVCFEISEERRERILSNAI---NLGV--------SDRIAVQQGAPRAFDDVPD 93 (178)
T ss_dssp EEEEEESTTT-TH-HHHHHHTTSSSEEEEEECSCHHHHHHHHHHHH---TTTC--------TTSEEEECCTTGGGGGCCS
T ss_pred CeEEEeCCCC-CH-HHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHH---HhCC--------CCCEEEecchHhhhhccCC
Confidence 3788999997 54 55566665557899999999998887664210 0000 11233333332222 5
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
..|+|++.-+... ...++.+.+.++++..++... ........+...+++.
T Consensus 94 ~~D~i~~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~-~~~~~~~~~~~~~~~~ 143 (178)
T 3hm2_A 94 NPDVIFIGGGLTA----------------PGVFAAAWKRLPVGGRLVANA-VTVESEQMLWALRKQF 143 (178)
T ss_dssp CCSEEEECC-TTC----------------TTHHHHHHHTCCTTCEEEEEE-CSHHHHHHHHHHHHHH
T ss_pred CCCEEEECCcccH----------------HHHHHHHHHhcCCCCEEEEEe-eccccHHHHHHHHHHc
Confidence 6899987643211 346777888899888776533 3333444455555544
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.017 Score=53.32 Aligned_cols=66 Identities=17% Similarity=0.091 Sum_probs=45.4
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+|.|.|+ |++|..++..|++. |++|++++++++. .+ ..+.. +.+.-..+..++++++|
T Consensus 20 ~~vlVtGatG~iG~~l~~~L~~~--G~~V~~~~r~~~~-----~~-~~~~~------------~Dl~d~~~~~~~~~~~d 79 (347)
T 4id9_A 20 HMILVTGSAGRVGRAVVAALRTQ--GRTVRGFDLRPSG-----TG-GEEVV------------GSLEDGQALSDAIMGVS 79 (347)
T ss_dssp -CEEEETTTSHHHHHHHHHHHHT--TCCEEEEESSCCS-----SC-CSEEE------------SCTTCHHHHHHHHTTCS
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCEEEEEeCCCCC-----CC-ccEEe------------cCcCCHHHHHHHHhCCC
Confidence 78999997 99999999999999 9999999998643 11 11100 11111122445678999
Q ss_pred EEEEecc
Q 017997 81 IVFVSVN 87 (362)
Q Consensus 81 vVii~vp 87 (362)
+||-+..
T Consensus 80 ~vih~A~ 86 (347)
T 4id9_A 80 AVLHLGA 86 (347)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9998864
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0092 Score=49.74 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=31.7
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|++|.|||.|..|+.+|..|++. |.+|+++++++
T Consensus 1 ~~~vvIIGgG~~Gl~~A~~l~~~--g~~v~lie~~~ 34 (180)
T 2ywl_A 1 MWDVIVVGGGPSGLSAALFLARA--GLKVLVLDGGR 34 (180)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence 57999999999999999999999 99999999875
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0095 Score=56.10 Aligned_cols=30 Identities=13% Similarity=0.437 Sum_probs=24.1
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCC---eEEEEe
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSI---EVAVVD 33 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~---~V~~~d 33 (362)
|||+||| .||+|.-+...|.++ +| ++..+.
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~--~~p~~el~~~a 36 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEES--TLPIDKIRYLA 36 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC--CCCEEEEEEEE
T ss_pred cEEEEECCCChHHHHHHHHHhcC--CCCcEEEEEEE
Confidence 6999999 799999999988886 45 445554
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.024 Score=52.59 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=30.9
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEe-C-CHHHHHHH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVD-I-SVSRINAW 42 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d-~-~~~~~~~l 42 (362)
|+||+|+|.|++|.-+.+.+.++ |..+|+++. + +++.+..+
T Consensus 1 ~ikVgI~G~G~iG~~l~R~l~~~-~~veiv~i~~~~~~~~~a~l 43 (330)
T 1gad_O 1 TIKVGINGFGRIGRIVFRAAQKR-SDIEIVAINDLLDADYMAYM 43 (330)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-SSEEEEEEECSSCHHHHHHH
T ss_pred CeEEEEECcCHHHHHHHHHHHcC-CCeEEEEEcCCCChhHHhHh
Confidence 57999999999999999888876 466777664 3 45554443
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0059 Score=53.42 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=47.1
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
|+|.|.| .|.+|..++..|++. |+ +|+++++++++.+.+........ ...+.-..+..+++++
T Consensus 19 ~~vlVtGasg~iG~~l~~~L~~~--G~~~~V~~~~r~~~~~~~~~~~~~~~~------------~~D~~d~~~~~~~~~~ 84 (242)
T 2bka_A 19 KSVFILGASGETGRVLLKEILEQ--GLFSKVTLIGRRKLTFDEEAYKNVNQE------------VVDFEKLDDYASAFQG 84 (242)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHH--TCCSEEEEEESSCCCCCSGGGGGCEEE------------ECCGGGGGGGGGGGSS
T ss_pred CeEEEECCCcHHHHHHHHHHHcC--CCCCEEEEEEcCCCCccccccCCceEE------------ecCcCCHHHHHHHhcC
Confidence 5799998 699999999999999 89 99999998654322111000000 0011111234455678
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
+|+||-|...
T Consensus 85 ~d~vi~~ag~ 94 (242)
T 2bka_A 85 HDVGFCCLGT 94 (242)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCc
Confidence 9999999764
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.019 Score=53.16 Aligned_cols=35 Identities=31% Similarity=0.421 Sum_probs=26.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHc-----CCCCeEEEE-eCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALK-----CPSIEVAVV-DISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~-----~~G~~V~~~-d~~~ 36 (362)
+||+|+|+|.||..++..|.++ +++.+|+++ |+++
T Consensus 5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~ 45 (325)
T 3ing_A 5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRS 45 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSB
T ss_pred EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecCh
Confidence 4899999999999999999863 135666655 6654
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.018 Score=57.47 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=35.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
++|.|+|+|.+|..+|..|.+. |++|+++|.|+++++.+
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~--g~~v~vid~d~~~~~~~ 387 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRK--PVPFILIDRQESPVCND 387 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCCSSCCS
T ss_pred CCEEEECCCHHHHHHHHHHHHC--CCCEEEEECChHHHhhc
Confidence 4789999999999999999999 99999999999876544
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.027 Score=52.31 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=31.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC-CCCeEEEE-eC-CHHHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC-PSIEVAVV-DI-SVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~-~G~~V~~~-d~-~~~~~~~l~ 43 (362)
+||+|+|.|++|.-+.+.|.++. |..+|+.+ |+ +++....+-
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll 45 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLL 45 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhc
Confidence 48999999999999999888763 46888866 43 555555443
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0085 Score=55.48 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=31.3
Q ss_pred CceEEEEcCChhHHHHHHHHHH---cCCCCeEEEEeCCH
Q 017997 1 MVKICCIGAGYVGGPTMAVIAL---KCPSIEVAVVDISV 36 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~---~~~G~~V~~~d~~~ 36 (362)
|++|.|||.|..|+.+|..|++ . |++|+++|+++
T Consensus 1 m~dV~IIGaG~aGl~~A~~L~~~~~~--G~~V~v~Ek~~ 37 (342)
T 3qj4_A 1 MAQVLIVGAGMTGSLCAALLRRQTSG--PLYLAVWDKAD 37 (342)
T ss_dssp CEEEEEECCSHHHHHHHHHHHSCC-C--CEEEEEECSSS
T ss_pred CCcEEEECCcHHHHHHHHHHHhhccC--CceEEEEECCC
Confidence 6789999999999999999999 7 99999999763
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.081 Score=49.20 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=31.3
Q ss_pred ceEEEEcCChhHHHHHHHHHH---cCCCCeEEEEe-C-CHHHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIAL---KCPSIEVAVVD-I-SVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~---~~~G~~V~~~d-~-~~~~~~~l~ 43 (362)
+||+|+|.|++|..+.+.|.+ + |..+|+++. + +++....+-
T Consensus 3 ikVgI~G~G~iGr~l~r~l~~~~~~-~~~eivai~~~~~~~~~~~ll 48 (339)
T 2x5j_O 3 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLL 48 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTSGG-GTEEEEEEECSSCHHHHHHHH
T ss_pred eEEEEECcCHHHHHHHHHHHcCCCC-CCEEEEEEeCCCCHHHHHHHh
Confidence 699999999999999999887 4 367877664 3 556555544
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0085 Score=58.52 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=31.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|++|.|||.|.-|++.|..|+++ |++|++++.+.
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~--G~~V~VlEa~~ 34 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAA--GIPVLLLEQRD 34 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHT--TCCEEEECCC-
T ss_pred CCCEEEECCcHHHHHHHHHHHHC--CCcEEEEccCC
Confidence 78999999999999999999999 99999999865
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0041 Score=58.29 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=34.4
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
||+|.|.| .|++|..++..|++.. |++|++++++++..+.+
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~~~~~ 65 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILETT-DWEVFGMDMQTDRLGDL 65 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHS-SCEEEEEESCCTTTGGG
T ss_pred CCEEEEECCCChHHHHHHHHHHhCC-CCEEEEEeCChhhhhhh
Confidence 47999999 6999999999999862 79999999987655444
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.29 Score=41.28 Aligned_cols=113 Identities=15% Similarity=0.183 Sum_probs=69.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhh---hc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKH---VS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a---~~ 77 (362)
.+|.-+|+|. |. ++..+++.+++.+|+++|++++.++.+++.. +.....++++ ..|..+. ..
T Consensus 42 ~~vLDiG~G~-G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~------------~~~~~~~v~~~~~d~~~~~~~~~ 107 (204)
T 3e05_A 42 LVMWDIGAGS-AS-VSIEASNLMPNGRIFALERNPQYLGFIRDNL------------KKFVARNVTLVEAFAPEGLDDLP 107 (204)
T ss_dssp CEEEEETCTT-CH-HHHHHHHHCTTSEEEEEECCHHHHHHHHHHH------------HHHTCTTEEEEECCTTTTCTTSC
T ss_pred CEEEEECCCC-CH-HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH------------HHhCCCcEEEEeCChhhhhhcCC
Confidence 3688899996 54 5666777744589999999999988776420 0000122332 2232221 25
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
..|+|+...+.+ .....++.+.+.++++..++.. +....+.+.+.+.+++.
T Consensus 108 ~~D~i~~~~~~~---------------~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~l~~~ 158 (204)
T 3e05_A 108 DPDRVFIGGSGG---------------MLEEIIDAVDRRLKSEGVIVLN-AVTLDTLTKAVEFLEDH 158 (204)
T ss_dssp CCSEEEESCCTT---------------CHHHHHHHHHHHCCTTCEEEEE-ECBHHHHHHHHHHHHHT
T ss_pred CCCEEEECCCCc---------------CHHHHHHHHHHhcCCCeEEEEE-ecccccHHHHHHHHHHC
Confidence 689998874321 1367788888999988877653 23334445566666654
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.03 Score=49.80 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=32.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~ 43 (362)
.+|.|+|+|.+|..++..|+.. |. +++++|.+.-....++
T Consensus 29 ~~VlvvG~GglG~~va~~La~~--Gvg~i~lvD~d~v~~sNL~ 69 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGA--GVGTLVLADDDDVHLSNLQ 69 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCSEEEEECCCBCCGGGTT
T ss_pred CcEEEEccCHHHHHHHHHHHHc--CCCeEEEEeCCCcccccCC
Confidence 4899999999999999999999 65 8999998753333333
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.011 Score=55.89 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=24.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEE
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVV 32 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~ 32 (362)
+||+|+| .||+|.-+...|.++ |..++..+
T Consensus 20 ~kVaIvGAtG~vG~ell~lL~~h-p~~el~~l 50 (381)
T 3hsk_A 20 KKAGVLGATGSVGQRFILLLSKH-PEFEIHAL 50 (381)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-SSEEEEEE
T ss_pred cEEEEECCCChHHHHHHHHHHcC-CCceEEEe
Confidence 5899999 699999999988876 45677544
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.031 Score=53.99 Aligned_cols=113 Identities=16% Similarity=0.233 Sum_probs=65.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+||.|||+|..|.+.|..|++. ||+|+++|..... ++... ++. .-++..-....+.+.++|+
T Consensus 6 ~~v~viG~G~~G~~~a~~l~~~--G~~v~~~D~~~~~-------------~~~~~-l~~--G~~~~~g~~~~~~~~~~d~ 67 (439)
T 2x5o_A 6 KNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMTP-------------PGLDK-LPE--AVERHTGSLNDEWLMAADL 67 (439)
T ss_dssp CCEEEECCHHHHHHHHHHHHTT--TCCCEEEESSSSC-------------TTGGG-SCT--TSCEEESSCCHHHHHTCSE
T ss_pred CEEEEEeecHHHHHHHHHHHhC--CCEEEEEECCCCc-------------chhHH-hhC--CCEEEECCCcHHHhccCCE
Confidence 6899999999999999888888 9999999985421 00000 000 1112212222445678999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH----------HHHHhhcCCCCEEEEeeCCccccHHH-HHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA----------RVIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~----------~~i~~~l~~~~iVv~~STv~~gt~~~-l~~~l~~~ 144 (362)
||++..-|.+ .| .+..+. +.+...+ +..+|-++.|..=+||.. +..+|.+.
T Consensus 68 vV~s~gi~~~--------~p---~~~~a~~~~~~v~~~~~~~~~~~-~~~vI~VTGTnGKTTT~~ml~~iL~~~ 129 (439)
T 2x5o_A 68 IVASPGIALA--------HP---SLSAAADAGIEIVGDIELFCREA-QAPIVAITGSNGKSTVTTLVGEMAKAA 129 (439)
T ss_dssp EEECTTSCTT--------CH---HHHHHHHTTCEEECHHHHHHHHC-CSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCC--------CH---HHHHHHHCCCcEEEHHHHHHHhc-CCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 9988543321 12 122211 1122233 356787778876666654 56777664
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.11 Score=47.53 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=30.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|+|.|.| .|++|..++..|++. ||+|+++.++++
T Consensus 10 ~~vlVTGatGfIG~~l~~~Ll~~--G~~V~~~~r~~~ 44 (338)
T 2rh8_A 10 KTACVVGGTGFVASLLVKLLLQK--GYAVNTTVRDPD 44 (338)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHT--TCEEEEEESCTT
T ss_pred CEEEEECCchHHHHHHHHHHHHC--CCEEEEEEcCcc
Confidence 6899999 799999999999999 999999988764
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.013 Score=54.34 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=31.3
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
||+|.|.|+ |++|..++..|++. |++|+++++++
T Consensus 27 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~ 61 (352)
T 1sb8_A 27 PKVWLITGVAGFIGSNLLETLLKL--DQKVVGLDNFA 61 (352)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCC
Confidence 478999997 99999999999999 99999999964
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.011 Score=55.85 Aligned_cols=69 Identities=23% Similarity=0.345 Sum_probs=39.5
Q ss_pred CceEEEEc-CChhHHHHHH-HHHHcCCCC---eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 1 MVKICCIG-AGYVGGPTMA-VIALKCPSI---EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~-~la~~~~G~---~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
||||+|+| .|++|.-+.. .|.++ ++ .+..+..+ . .|. ++ +.+.. ..-.+.-..++++
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~--~~~~v~i~~~~~~-s------~G~-~v--~~~~g-----~~i~~~~~~~~~~- 62 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEER--DFDAIRPVFFSTS-Q------LGQ-AA--PSFGG-----TTGTLQDAFDLEA- 62 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT--GGGGSEEEEEESS-S------TTS-BC--CGGGT-----CCCBCEETTCHHH-
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcC--CCCeEEEEEEEeC-C------CCC-Cc--cccCC-----CceEEEecCChHH-
Confidence 78999999 9999999999 45544 43 44454442 1 111 11 00000 0011222234554
Q ss_pred hcCCcEEEEecc
Q 017997 76 VSEADIVFVSVN 87 (362)
Q Consensus 76 ~~~aDvVii~vp 87 (362)
++++|+||.|+|
T Consensus 63 ~~~~DvVf~a~g 74 (367)
T 1t4b_A 63 LKALDIIVTCQG 74 (367)
T ss_dssp HHTCSEEEECSC
T ss_pred hcCCCEEEECCC
Confidence 679999999976
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.013 Score=54.30 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=30.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC----CCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC----PSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~----~G~~V~~~d~~~ 36 (362)
|+|.|||.|.+|+++|..|++++ |+++|+++|.+.
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 78999999999999999999992 229999999874
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.14 Score=45.42 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=34.2
Q ss_pred eEEEEcC-C-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCIGA-G-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VIGl-G-~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++.|.|. | .+|..+|..|++. |++|++.++++++.+.+.
T Consensus 24 ~vlITGasg~GIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~ 64 (266)
T 3o38_A 24 VVLVTAAAGTGIGSTTARRALLE--GADVVISDYHERRLGETR 64 (266)
T ss_dssp EEEESSCSSSSHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHHC--CCEEEEecCCHHHHHHHH
Confidence 5778898 8 5999999999999 999999999998876654
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.056 Score=49.10 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=28.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~ 38 (362)
|+|.|.|+ |++|..++..|++. |++|++++++++.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~ 38 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQN--NWHAVGCGFRRAR 38 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT--TCEEEEEC-----
T ss_pred CeEEEECCCcHHHHHHHHHHHhC--CCeEEEEccCCCC
Confidence 68999996 99999999999998 9999999987543
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.012 Score=54.94 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=24.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHHc-CCCCeEEEEe
Q 017997 2 VKICCIG-AGYVGGPTMAVIALK-CPSIEVAVVD 33 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~-~~G~~V~~~d 33 (362)
|||+|+| .||+|.-+...|.++ +|..++..+.
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~ 35 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFA 35 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEE
Confidence 6999999 799999999988886 1223455554
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.21 Score=44.24 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=34.9
Q ss_pred CceEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 1 MVKICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 1 ~mkI~VI--GlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|.|..+| |.+.+|..+|..|++. |.+|++.|+++++.+.+.+
T Consensus 1 MnK~vlVTGas~GIG~aia~~la~~--Ga~V~~~~~~~~~~~~~~~ 44 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGKQICLDFLEA--GDKVCFIDIDEKRSADFAK 44 (247)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHT
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 5566666 5788999999999999 9999999999988877654
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0082 Score=55.53 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=31.5
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
||+|.|.| .|++|..++..|++.++|++|+++++++
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~ 40 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLT 40 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 57899999 5999999999999875579999999864
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.023 Score=52.28 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=33.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINA 41 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~ 41 (362)
|+|.|.|+ |++|..++..|++.+ |++|+++++++++.+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~~~~ 40 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLRED-HYEVYGLDIGSDAISR 40 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHST-TCEEEEEESCCGGGGG
T ss_pred CeEEEECCCcHHHHHHHHHHHHhC-CCEEEEEeCCcchHHH
Confidence 78999996 999999999999862 6999999998766543
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.021 Score=54.18 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=31.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|.|||+|..|+.+|..|++. |++|+++|+++
T Consensus 24 ~dV~IVGaG~aGl~~A~~La~~--G~~V~v~E~~~ 56 (407)
T 3rp8_A 24 MKAIVIGAGIGGLSAAVALKQS--GIDCDVYEAVK 56 (407)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSS
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCC
Confidence 5799999999999999999999 99999999875
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.071 Score=50.24 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=31.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC-CCCeEEEE-eC-CHHHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC-PSIEVAVV-DI-SVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~-~G~~V~~~-d~-~~~~~~~l~ 43 (362)
+||+|+|.|++|..+.+.|.++. ++.+|+++ |+ +++....+.
T Consensus 3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll 47 (380)
T 2d2i_A 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLL 47 (380)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHH
T ss_pred cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhh
Confidence 69999999999999999988752 46787776 43 566655443
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.035 Score=51.69 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=32.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC-CCCeEEEEe-C-CHHHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC-PSIEVAVVD-I-SVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~-~G~~V~~~d-~-~~~~~~~l~ 43 (362)
+||+|+|.|++|..+.+.|.++. |+++|+++. + +++....+-
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~ 47 (339)
T 3b1j_A 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLL 47 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHh
Confidence 59999999999999999988762 467887764 4 666665543
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.02 Score=54.60 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=31.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|+|.|||.|..|++.|..|+++ |++|++++.++
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~--G~~V~vlE~~~ 33 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARN--GHEIIVLEKSA 33 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 7999999999999999999999 99999999863
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.016 Score=54.57 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=32.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|+|.|||.|..|+.+|..|++..||++|+++++++.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~ 36 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDE 36 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 689999999999999999998766899999998753
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.29 Score=45.54 Aligned_cols=40 Identities=30% Similarity=0.411 Sum_probs=33.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..+..+... |. +|+++|+++++.+.+++
T Consensus 174 ~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~ 214 (356)
T 1pl8_A 174 KVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSATRLSKAKE 214 (356)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 689999999999766655555 87 89999999999887765
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.2 Score=46.53 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=34.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|...+..+... |.+|+++|+++++.+.+++
T Consensus 171 ~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~ 210 (352)
T 1e3j_A 171 TVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN 210 (352)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH
Confidence 689999999998777666556 8899999999999887765
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.27 Score=43.71 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=34.0
Q ss_pred eEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI--GlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| |.+.+|..+|..|++. |.+|+++|+++++++++.+
T Consensus 8 KvalVTGas~GIG~aiA~~la~~--Ga~Vv~~~~~~~~~~~~~~ 49 (254)
T 4fn4_A 8 KVVIVTGAGSGIGRAIAKKFALN--DSIVVAVELLEDRLNQIVQ 49 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHH
Confidence 56666 4678999999999999 9999999999998877653
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.38 Score=40.86 Aligned_cols=110 Identities=11% Similarity=0.115 Sum_probs=67.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhh---hc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKH---VS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a---~~ 77 (362)
++|.-+|+|. |. ++..+++. +.+|+++|++++.++.+++.... .+ ...++++ ..|..+. ..
T Consensus 57 ~~vLDlGcG~-G~-~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~---~g--------~~~~v~~~~~d~~~~~~~~~ 121 (204)
T 3njr_A 57 ELLWDIGGGS-GS-VSVEWCLA--GGRAITIEPRADRIENIQKNIDT---YG--------LSPRMRAVQGTAPAALADLP 121 (204)
T ss_dssp CEEEEETCTT-CH-HHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH---TT--------CTTTEEEEESCTTGGGTTSC
T ss_pred CEEEEecCCC-CH-HHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHH---cC--------CCCCEEEEeCchhhhcccCC
Confidence 3688899997 53 56677777 78999999999998876642000 00 0113433 2333331 34
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
..|+|++.-. . + .. +++.+.+.++++..++.. +..+.+...+.+.+++.
T Consensus 122 ~~D~v~~~~~--~-----------~---~~-~l~~~~~~LkpgG~lv~~-~~~~~~~~~~~~~l~~~ 170 (204)
T 3njr_A 122 LPEAVFIGGG--G-----------S---QA-LYDRLWEWLAPGTRIVAN-AVTLESETLLTQLHARH 170 (204)
T ss_dssp CCSEEEECSC--C-----------C---HH-HHHHHHHHSCTTCEEEEE-ECSHHHHHHHHHHHHHH
T ss_pred CCCEEEECCc--c-----------c---HH-HHHHHHHhcCCCcEEEEE-ecCcccHHHHHHHHHhC
Confidence 6899986531 1 1 24 778888889988777653 34445555666666654
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.015 Score=54.28 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=29.4
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|.|||+|..|+++|..|+++ |++|+++|+.+
T Consensus 7 ViIVGaGpaGl~~A~~La~~--G~~V~v~Er~~ 37 (397)
T 3oz2_A 7 VLVVGGGPGGSTAARYAAKY--GLKTLMIEKRP 37 (397)
T ss_dssp EEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence 99999999999999999999 99999999864
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.02 Score=53.67 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=29.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
+|.|||.|..|+++|..|++. |++|+++|.+
T Consensus 7 dVvIIGgGi~Gl~~A~~La~~--G~~V~lle~~ 37 (382)
T 1y56_B 7 EIVVIGGGIVGVTIAHELAKR--GEEVTVIEKR 37 (382)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 599999999999999999999 9999999986
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.14 Score=48.17 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=33.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..+..+... |. +|+++|+++++.+.+++
T Consensus 196 ~VlV~GaG~vG~~a~q~a~~~--Ga~~Vi~~~~~~~~~~~a~~ 236 (378)
T 3uko_A 196 NVAIFGLGTVGLAVAEGAKTA--GASRIIGIDIDSKKYETAKK 236 (378)
T ss_dssp CEEEECCSHHHHHHHHHHHHH--TCSCEEEECSCTTHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence 689999999999766666666 87 89999999999987775
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.019 Score=53.96 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=25.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC--CCCeEEEE-eC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC--PSIEVAVV-DI 34 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~--~G~~V~~~-d~ 34 (362)
+||+|||+|.||..++..+.+.. .+.+|+++ |+
T Consensus 5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~ 40 (358)
T 1ebf_A 5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEA 40 (358)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECS
T ss_pred EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 68999999999999999998851 12465544 54
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.028 Score=52.30 Aligned_cols=31 Identities=19% Similarity=0.448 Sum_probs=29.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
.|.|||.|.+|+++|..|++. |++|+++|..
T Consensus 8 dVvVIG~Gi~Gls~A~~La~~--G~~V~vle~~ 38 (363)
T 1c0p_A 8 RVVVLGSGVIGLSSALILARK--GYSVHILARD 38 (363)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHhC--CCEEEEEecc
Confidence 699999999999999999999 9999999975
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.15 Score=48.46 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=33.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..+..+... |. +|+++|+++++.+.+++
T Consensus 216 ~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~~~~ 256 (404)
T 3ip1_A 216 NVVILGGGPIGLAAVAILKHA--GASKVILSEPSEVRRNLAKE 256 (404)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 689999999998666555555 88 99999999999987765
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.11 Score=47.90 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=34.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..+..+... |.+|+++|+++++.+.+++
T Consensus 169 ~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~ 208 (340)
T 3s2e_A 169 WVVISGIGGLGHVAVQYARAM--GLRVAAVDIDDAKLNLARR 208 (340)
T ss_dssp EEEEECCSTTHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH
Confidence 689999999998776666666 8999999999999998776
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.057 Score=51.59 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=31.1
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|+|.|.|+ |++|..++..|++. |++|++++|+++
T Consensus 70 ~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~R~~~ 104 (427)
T 4f6c_A 70 GNTLLTGATGFLGAYLIEALQGY--SHRIYCFIRADN 104 (427)
T ss_dssp EEEEEECTTSHHHHHHHHHHTTT--EEEEEEEEECSS
T ss_pred CEEEEecCCcHHHHHHHHHHHcC--CCEEEEEECCCC
Confidence 58999995 99999999999887 999999999876
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.055 Score=50.23 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=31.3
Q ss_pred CceEEEEcCChhHHHHHHHHHHcC-CCCeEEEEe-C-CHHHHHHHH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKC-PSIEVAVVD-I-SVSRINAWN 43 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~-~G~~V~~~d-~-~~~~~~~l~ 43 (362)
|+||+|+|.|++|..+.+.|.++. |..+|+.+. . +++....+-
T Consensus 1 ~ikVgInG~G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll 46 (337)
T 1rm4_O 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLL 46 (337)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHh
Confidence 579999999999999999888652 456776654 2 555555443
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.056 Score=50.25 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=48.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|.|+|+|.+|+..+..+... |.+|+++++++++.+.+++-.. ...+ ++.+...+..|+
T Consensus 178 ~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~lGa-----------------~~v~-~~~~~~~~~~D~ 237 (348)
T 3two_A 178 TKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDALSMGV-----------------KHFY-TDPKQCKEELDF 237 (348)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHHHTTC-----------------SEEE-SSGGGCCSCEEE
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHhcCC-----------------Ceec-CCHHHHhcCCCE
Confidence 3689999999998766665556 8999999999999887765211 1122 344432337999
Q ss_pred EEEeccCC
Q 017997 82 VFVSVNTP 89 (362)
Q Consensus 82 Vii~vptp 89 (362)
||-|++.+
T Consensus 238 vid~~g~~ 245 (348)
T 3two_A 238 IISTIPTH 245 (348)
T ss_dssp EEECCCSC
T ss_pred EEECCCcH
Confidence 99998754
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.025 Score=53.78 Aligned_cols=33 Identities=30% Similarity=0.285 Sum_probs=31.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|+|.|||.|..|++.|..|+++ |++|++++.+.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~--G~~V~vlE~~~ 33 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKA--GHEVEVFERLP 33 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCceEEEeCCC
Confidence 7899999999999999999999 99999999864
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.028 Score=53.45 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=31.5
Q ss_pred CceEEEEcCChhHHHHHHHHHH---cCCCCeEEEEeCCHH
Q 017997 1 MVKICCIGAGYVGGPTMAVIAL---KCPSIEVAVVDISVS 37 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~---~~~G~~V~~~d~~~~ 37 (362)
|++|.|||.|..|+..|..|++ . |++|+++|+++.
T Consensus 1 m~~VvIIGgG~aGl~aA~~L~~~~~~--g~~V~vie~~~~ 38 (409)
T 3h8l_A 1 MTKVLVLGGRFGALTAAYTLKRLVGS--KADVKVINKSRF 38 (409)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHGG--GSEEEEEESSSE
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCC--CCeEEEEeCCCC
Confidence 6899999999999999999999 7 899999998763
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.022 Score=51.81 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=42.5
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||+|.|.|. |++|..++..|++. |+.|.+..++....+.+..+ ..+ ....+.- .+..++++++
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~--g~~v~~~~~~~~~~~~~~~~-~~~------------~~~Dl~~-~~~~~~~~~~ 64 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSES--NEIVVIDNLSSGNEEFVNEA-ARL------------VKADLAA-DDIKDYLKGA 64 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTT--SCEEEECCCSSCCGGGSCTT-EEE------------ECCCTTT-SCCHHHHTTC
T ss_pred CCEEEEECCCchHHHHHHHHHHhC--CCEEEEEcCCCCChhhcCCC-cEE------------EECcCCh-HHHHHHhcCC
Confidence 789999995 99999999999998 85555444443222211110 000 0111211 3445667899
Q ss_pred cEEEEeccCC
Q 017997 80 DIVFVSVNTP 89 (362)
Q Consensus 80 DvVii~vptp 89 (362)
|+||-+...+
T Consensus 65 d~vih~a~~~ 74 (313)
T 3ehe_A 65 EEVWHIAANP 74 (313)
T ss_dssp SEEEECCCCC
T ss_pred CEEEECCCCC
Confidence 9999886543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.091 Score=48.80 Aligned_cols=40 Identities=25% Similarity=0.161 Sum_probs=34.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|...+..+... |. +|+++++++++.+.+++
T Consensus 170 ~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~ 210 (348)
T 2d8a_A 170 SVLITGAGPLGLLGIAVAKAS--GAYPVIVSEPSDFRRELAKK 210 (348)
T ss_dssp CEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 689999999999887777666 88 99999999999887764
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.039 Score=49.72 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=30.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|.|||+|.+|..-+..|.+. |++|++++.+.
T Consensus 14 k~VLVVGgG~va~rka~~Ll~~--Ga~VtViap~~ 46 (274)
T 1kyq_A 14 KRILLIGGGEVGLTRLYKLMPT--GCKLTLVSPDL 46 (274)
T ss_dssp CEEEEEEESHHHHHHHHHHGGG--TCEEEEEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCEEEEEcCCC
Confidence 5899999999999999999999 99999998753
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.049 Score=54.28 Aligned_cols=42 Identities=10% Similarity=0.030 Sum_probs=38.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD 45 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~ 45 (362)
++|.|+|.|.+|..++..|.+. |++|+++|.|+++++.+.+.
T Consensus 128 ~hviI~G~g~~g~~la~~L~~~--~~~vvvid~~~~~~~~~~~~ 169 (565)
T 4gx0_A 128 GHILIFGIDPITRTLIRKLESR--NHLFVVVTDNYDQALHLEEQ 169 (565)
T ss_dssp SCEEEESCCHHHHHHHHHTTTT--TCCEEEEESCHHHHHHHHHS
T ss_pred CeEEEECCChHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHh
Confidence 4799999999999999999988 99999999999999988765
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.16 Score=47.57 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=33.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..+..+... |. +|+++|+++++.+.+++
T Consensus 198 ~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~ 238 (376)
T 1e3i_A 198 TCAVFGLGCVGLSAIIGCKIA--GASRIIAIDINGEKFPKAKA 238 (376)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence 689999999999766655555 87 89999999999887765
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.19 Score=46.37 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=35.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
.+|.|+|+|.+|...+..+... |.+|+++++++++.+.+++
T Consensus 166 ~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~ 206 (339)
T 1rjw_A 166 EWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE 206 (339)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence 4799999999999888777777 8999999999999987765
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.45 Score=41.74 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=32.8
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++-|.| .|.+|..+|..|++. |++|++.++++++.+.+.
T Consensus 4 ~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~ 43 (256)
T 1geg_A 4 VALVTGAGQGIGKAIALRLVKD--GFAVAIADYNDATAKAVA 43 (256)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 455666 689999999999999 999999999988776543
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.49 E-value=1.1 Score=42.81 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=34.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeC----------CHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDI----------SVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~----------~~~~~~~l~~ 44 (362)
++|+|.|.|.||...|..|.+. |.+|+ +.|. |.+.+.++.+
T Consensus 219 k~vaVqG~GnVG~~~a~~L~~~--GakVVavsD~~G~i~dp~Gld~~~l~~~~~ 270 (419)
T 3aoe_E 219 ARVVVQGLGQVGAAVALHAERL--GMRVVAVATSMGGMYAPEGLDVAEVLSAYE 270 (419)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEEETTEEEECTTCCCHHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEEEcCCCeEECCCCCCHHHHHHHHH
Confidence 4799999999999999999998 89988 7788 7777766654
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.15 Score=47.68 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=33.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..++.+... |. +|+++|+++++.+.+++
T Consensus 194 ~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~ 234 (373)
T 1p0f_A 194 TCAVFGLGGVGFSAIVGCKAA--GASRIIGVGTHKDKFPKAIE 234 (373)
T ss_dssp EEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH
Confidence 799999999999776665556 77 89999999999887765
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.19 Score=43.57 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=33.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
+++-|.| .|.+|..+|..|++. |++|++.++++++.+.+.
T Consensus 3 k~vlITGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~ 43 (235)
T 3l77_A 3 KVAVITGASRGIGEAIARALARD--GYALALGARSVDRLEKIA 43 (235)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 3466667 589999999999999 999999999998877654
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.031 Score=52.30 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=30.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
++|.|||.|..|+++|..|++. |++|+++|.+
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~--G~~V~vie~~ 35 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAF 35 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred CCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCC
Confidence 4799999999999999999999 9999999985
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=94.42 E-value=1.6 Score=41.53 Aligned_cols=72 Identities=18% Similarity=0.154 Sum_probs=46.7
Q ss_pred ceEEEEcCChhHHHHHHHHHH-cCCCCeEE-EEeC----------CHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe
Q 017997 2 VKICCIGAGYVGGPTMAVIAL-KCPSIEVA-VVDI----------SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS 69 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~-~~~G~~V~-~~d~----------~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t 69 (362)
++|+|.|.|.||...|..|.+ . |.+|+ +.|. |.+.+..+.+..-.+.+. .+ .+..
T Consensus 210 ~~vaVqG~GnVG~~~a~~L~e~~--GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y----------~~-a~~~ 276 (415)
T 2tmg_A 210 ATVAVQGFGNVGQFAALLISQEL--GSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTY----------PK-GERI 276 (415)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTC----------SS-SEEE
T ss_pred CEEEEECCcHHHHHHHHHHHHhc--CCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccC----------CC-ceEc
Confidence 479999999999999999998 7 88888 5566 666666665421111110 01 1222
Q ss_pred cCHHhhh-cCCcEEEEecc
Q 017997 70 TDVEKHV-SEADIVFVSVN 87 (362)
Q Consensus 70 ~d~~~a~-~~aDvVii~vp 87 (362)
+.++.+ .+||+++-|-.
T Consensus 277 -~~~eil~~~~DIliP~A~ 294 (415)
T 2tmg_A 277 -TNEELLELDVDILVPAAL 294 (415)
T ss_dssp -CHHHHTTCSCSEEEECSS
T ss_pred -CchhhhcCCCcEEEecCC
Confidence 233333 48999999964
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.017 Score=53.85 Aligned_cols=32 Identities=16% Similarity=0.448 Sum_probs=24.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHc-CCCCeEEEEe
Q 017997 2 VKICCIG-AGYVGGPTMAVIALK-CPSIEVAVVD 33 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~-~~G~~V~~~d 33 (362)
|||+|+| .|++|..+...|.++ .|..+++.+.
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~ 40 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLA 40 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 6899999 799999999998865 1234556554
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.42 Score=42.50 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=33.1
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++-|.| .|.+|..+|..|++. |++|++.++++++++.+.
T Consensus 6 ~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~ 45 (264)
T 3tfo_A 6 VILITGASGGIGEGIARELGVA--GAKILLGARRQARIEAIA 45 (264)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH
T ss_pred EEEEeCCccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 355556 589999999999999 999999999998877654
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.78 Score=40.49 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=33.1
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++-|.| .|.+|..+|..|++. |++|++.++++++.+.+.
T Consensus 15 ~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~ 54 (267)
T 1iy8_A 15 VVLITGGGSGLGRATAVRLAAE--GAKLSLVDVSSEGLEASK 54 (267)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 466666 689999999999999 999999999988776543
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.073 Score=41.77 Aligned_cols=95 Identities=19% Similarity=0.128 Sum_probs=61.0
Q ss_pred ceEEEEcC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
.+|+|||+ +.+|..+...|.+. ||+|+-++...+.+ ....+..++.+.-.
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~--g~~V~pVnP~~~~i------------------------~G~~~y~sl~dlp~ 58 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSH--GHEFIPVGRKKGEV------------------------LGKTIINERPVIEG 58 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHH--TCCEEEESSSCSEE------------------------TTEECBCSCCCCTT
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHC--CCeEEEECCCCCcC------------------------CCeeccCChHHCCC
Confidence 57999998 56899999999998 89999887642211 12455566666334
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH-HHHHHHHHhc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA-EAIEKILTHN 144 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~-~~l~~~l~~~ 144 (362)
.|++++++|.. .+.++++++.+. .... |+.. +|+. +++.+..++.
T Consensus 59 -vDlavi~~p~~---------------~v~~~v~e~~~~-g~k~-v~~~----~G~~~~e~~~~a~~~ 104 (122)
T 3ff4_A 59 -VDTVTLYINPQ---------------NQLSEYNYILSL-KPKR-VIFN----PGTENEELEEILSEN 104 (122)
T ss_dssp -CCEEEECSCHH---------------HHGGGHHHHHHH-CCSE-EEEC----TTCCCHHHHHHHHHT
T ss_pred -CCEEEEEeCHH---------------HHHHHHHHHHhc-CCCE-EEEC----CCCChHHHHHHHHHc
Confidence 99999998742 344556666554 3334 4332 3443 4566666554
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.28 Score=42.57 Aligned_cols=93 Identities=19% Similarity=0.150 Sum_probs=57.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhh---c
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---S 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---~ 77 (362)
.+|..+|+| .|. ++..+++. +.+|+++|++++.++..++.... .++ ..++.+ ..|..+.. .
T Consensus 93 ~~vldiG~G-~G~-~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~---~~~--------~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 93 KRVLEFGTG-SGA-LLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKK---FNL--------GKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp CEEEEECCT-TSH-HHHHHHHH--SSEEEEECSCHHHHHHHHHHHHH---TTC--------CTTEEEECSCTTTSCCCTT
T ss_pred CEEEEeCCC-ccH-HHHHHHHh--CCEEEEEecCHHHHHHHHHHHHH---cCC--------CCcEEEEEcChhhcccCCC
Confidence 378999999 565 55566666 68999999999998876642100 000 012332 22332222 3
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
..|+|+...|.| ..+++.+.+.++++..++..
T Consensus 158 ~~D~v~~~~~~~-----------------~~~l~~~~~~L~~gG~l~~~ 189 (248)
T 2yvl_A 158 IFHAAFVDVREP-----------------WHYLEKVHKSLMEGAPVGFL 189 (248)
T ss_dssp CBSEEEECSSCG-----------------GGGHHHHHHHBCTTCEEEEE
T ss_pred cccEEEECCcCH-----------------HHHHHHHHHHcCCCCEEEEE
Confidence 589999876532 23566777888887766553
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.035 Score=51.27 Aligned_cols=32 Identities=31% Similarity=0.339 Sum_probs=30.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
+|.|||.|..|++.|..|++. |++|+++|.++
T Consensus 6 dvvIIG~G~~Gl~~A~~La~~--G~~V~vlE~~~ 37 (369)
T 3dme_A 6 DCIVIGAGVVGLAIARALAAG--GHEVLVAEAAE 37 (369)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred CEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCC
Confidence 699999999999999999999 99999999863
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.034 Score=53.35 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=30.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|.|||.|..|+.+|..|++. |++|+++|+.+
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~--G~~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQH--DVDVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHT--TCEEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHHC--CCeEEEEcCCC
Confidence 3799999999999999999999 99999999864
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.033 Score=52.66 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|.|||.|..|+.+|..|++. |++|+++|+++
T Consensus 6 ~~V~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~ 38 (397)
T 2vou_A 6 DRIAVVGGSISGLTAALMLRDA--GVDVDVYERSP 38 (397)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCCEEEEecCC
Confidence 4799999999999999999999 99999999864
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.27 E-value=0.15 Score=47.71 Aligned_cols=42 Identities=19% Similarity=0.360 Sum_probs=33.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSD 45 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~ 45 (362)
.+|.|||+|.+|.++|..|+.. |. +++++|.|.-....++++
T Consensus 119 ~~VlvvG~GglGs~va~~La~a--Gvg~i~lvD~D~Ve~sNL~Rq 161 (353)
T 3h5n_A 119 AKVVILGCGGIGNHVSVILATS--GIGEIILIDNDQIENTNLTRQ 161 (353)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCSEEEEEECCBCCGGGGGTC
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCCeEEEECCCcCcccccccc
Confidence 4799999999999999999999 64 799999875444445443
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.51 Score=41.21 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=34.1
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++-|.| .|.+|..+|..|++. |++|+++|++++..+.+.+
T Consensus 11 ~vlITGas~giG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~ 51 (253)
T 3qiv_A 11 VGIVTGSGGGIGQAYAEALARE--GAAVVVADINAEAAEAVAK 51 (253)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence 466667 589999999999999 9999999999988776543
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.077 Score=48.24 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=30.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.+|.|||+|.+|+++|..|+.. |. +++++|.|.-....|++
T Consensus 37 ~~VlVvGaGGlGs~va~~La~a--GVG~i~lvD~D~Ve~sNL~R 78 (292)
T 3h8v_A 37 FAVAIVGVGGVGSVTAEMLTRC--GIGKLLLFDYDKVELANMNR 78 (292)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCSEEEEECCCBC-------
T ss_pred CeEEEECcCHHHHHHHHHHHHc--CCCEEEEECCCccChhhccc
Confidence 4799999999999999999999 54 89999987644445554
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.097 Score=48.59 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=32.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.||.|||+|.+|.++|..|+.. |. +++++|.+.-....+++
T Consensus 35 ~~VlIvGaGGlGs~va~~La~a--GVg~ItlvD~D~Ve~SNL~R 76 (340)
T 3rui_A 35 TKVLLLGAGTLGCYVSRALIAW--GVRKITFVDNGTVSYSNPVR 76 (340)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCBCCTTSTTT
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCEEEEecCCEeccccccc
Confidence 4899999999999999999999 64 79999987543333433
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.031 Score=52.06 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=30.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.+|.|||.|.+|+++|..|++. |++|+++|...
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~~--G~~V~vle~~~ 35 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATRA--GLNVLMTDAHM 35 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHHT--TCCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 4799999999999999999999 99999999863
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.96 Score=39.16 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=33.7
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++-|.| .|.+|..+|..|++. |++|++.++++++++.+.
T Consensus 5 ~vlVTGas~GIG~a~a~~l~~~--G~~V~~~~r~~~~~~~~~ 44 (235)
T 3l6e_A 5 HIIVTGAGSGLGRALTIGLVER--GHQVSMMGRRYQRLQQQE 44 (235)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 566777 589999999999999 999999999998877654
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.32 Score=43.23 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=34.0
Q ss_pred eEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VI--GlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
|+++| |.+.+|..+|..|++. |.+|++.|++++++++..
T Consensus 10 KvalVTGas~GIG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~ 50 (255)
T 4g81_D 10 KTALVTGSARGLGFAYAEGLAAA--GARVILNDIRATLLAESV 50 (255)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT--TCEEEECCSCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 67777 5788999999999999 999999999998877654
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.36 Score=44.91 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=32.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~-V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..++.+... |.+ |++.|.++++.+.+++
T Consensus 182 ~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~ 222 (363)
T 3m6i_A 182 PVLICGAGPIGLITMLCAKAA--GACPLVITDIDEGRLKFAKE 222 (363)
T ss_dssp CEEEECCSHHHHHHHHHHHHT--TCCSEEEEESCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 689999999998766555555 886 9999999999887765
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.22 Score=46.62 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=33.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..+..+... |. +|+++|+++++.+.+++
T Consensus 185 ~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~ 225 (370)
T 4ej6_A 185 TVAILGGGVIGLLTVQLARLA--GATTVILSTRQATKRRLAEE 225 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 689999999998766555555 87 89999999999887665
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.4 Score=42.42 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=32.8
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++-|.| .|.+|..+|..|++. |++|++.++++++.+.+.
T Consensus 12 ~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~ 51 (262)
T 3pk0_A 12 SVVVTGGTKGIGRGIATVFARA--GANVAVAGRSTADIDACV 51 (262)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 344555 689999999999999 999999999998877654
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.41 Score=42.35 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=33.1
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++-|.| .|.+|..+|..|++. |++|++.++++++.+.+.
T Consensus 10 ~~lVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~ 49 (265)
T 3lf2_A 10 VAVVTGGSSGIGLATVELLLEA--GAAVAFCARDGERLRAAE 49 (265)
T ss_dssp EEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 355666 689999999999999 999999999998877654
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.038 Score=51.62 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=30.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
.+|.|||.|..|++.|..|++. |++|+++|.+
T Consensus 18 ~dvvIIGgG~~Gl~~A~~La~~--G~~V~llE~~ 49 (382)
T 1ryi_A 18 YEAVVIGGGIIGSAIAYYLAKE--NKNTALFESG 49 (382)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred CCEEEECcCHHHHHHHHHHHhC--CCcEEEEeCC
Confidence 4799999999999999999999 9999999986
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.049 Score=49.78 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=30.6
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
||+|.|.| .|++|..++..|++. |++|++++++.
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~ 35 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDE--GLSVVVVDNLQ 35 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCS
T ss_pred CCEEEEECCCcHHHHHHHHHHHhC--CCEEEEEeCCC
Confidence 78999998 599999999999999 99999999864
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.23 Score=45.09 Aligned_cols=70 Identities=19% Similarity=0.326 Sum_probs=53.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+++.||| ...+|.|+|..|.+. +..|+.+... |.|+.+.+++||
T Consensus 180 k~vvViGRS~iVGkPla~LL~~~--~ATVTi~Hs~---------------------------------T~dl~~~~~~AD 224 (303)
T 4b4u_A 180 KHAVVVGRSAILGKPMAMMLLQA--NATVTICHSR---------------------------------TQNLPELVKQAD 224 (303)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSSHHHHHHTCS
T ss_pred CEEEEEeccccccchHHHHHHhc--CCEEEEecCC---------------------------------CCCHHHHhhcCC
Confidence 4789999 567899999999998 8999987532 345666788999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+||.+++-|.-. . ...++++++||+-
T Consensus 225 IvV~A~G~p~~i--------------~------~d~vk~GavVIDV 250 (303)
T 4b4u_A 225 IIVGAVGKAELI--------------Q------KDWIKQGAVVVDA 250 (303)
T ss_dssp EEEECSCSTTCB--------------C------GGGSCTTCEEEEC
T ss_pred eEEeccCCCCcc--------------c------cccccCCCEEEEe
Confidence 999999866321 1 2457899999873
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.042 Score=51.75 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=30.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.|.|||.|..|++.|..|++. |++|+++|..+
T Consensus 6 DVvIIGaG~~Gl~~A~~La~~--G~~V~vlE~~~ 37 (397)
T 2oln_A 6 DVVVVGGGPVGLATAWQVAER--GHRVLVLERHT 37 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 699999999999999999999 99999999864
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.14 E-value=0.21 Score=46.73 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=33.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..+..+... |. +|+++|+++++.+.+++
T Consensus 194 ~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~ 234 (374)
T 2jhf_A 194 TCAVFGLGGVGLSVIMGCKAA--GAARIIGVDINKDKFAKAKE 234 (374)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence 689999999999776666556 87 89999999999887765
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.19 Score=46.52 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=33.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..++.+...+ |.+|+++|+++++.+.+++
T Consensus 174 ~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~ 214 (345)
T 3jv7_A 174 TAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALARE 214 (345)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH
Confidence 6899999999986555444432 6899999999999998776
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.044 Score=54.39 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=33.7
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
||+|.|||.|.-|+..|..|++.++|++|+++|.++.
T Consensus 1 M~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~ 37 (565)
T 3ntd_A 1 MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEY 37 (565)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCC
Confidence 7899999999999999999998867899999998754
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.039 Score=53.30 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=30.9
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISV 36 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~ 36 (362)
|++|+|||.|..|++.|..|++. |+ +|++++.+.
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~--G~~~~V~vlEa~~ 37 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRA--PCPPKVVLVESSE 37 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTS--SSCCEEEEECSSS
T ss_pred CceEEEECCcHHHHHHHHHHHhC--CCCCcEEEEeCCC
Confidence 36899999999999999999999 89 999999753
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.039 Score=51.76 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|.|||.|..|+.+|..|++. |++|+++|+++
T Consensus 12 ~dVvIVGaG~aGl~~A~~L~~~--G~~v~viE~~~ 44 (379)
T 3alj_A 12 RRAEVAGGGFAGLTAAIALKQN--GWDVRLHEKSS 44 (379)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCCEEEEecCC
Confidence 4799999999999999999999 99999999864
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.052 Score=48.50 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=30.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.+|.|||.|.-|+..|..|++. |++|+++|.++
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~ 35 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRA--RKNILLVDAGE 35 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred CCEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCC
Confidence 4899999999999999999999 99999999753
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.047 Score=53.00 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=31.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|+|.|||.|..|+..|..|++.++|++|+++|.++.
T Consensus 4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~ 39 (472)
T 3iwa_A 4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASR 39 (472)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC--
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCc
Confidence 589999999999999999998877899999999865
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.02 E-value=1.2 Score=38.60 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=33.5
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++-|.| .|.+|..+|..|++. |++|++.++++++.+.+.
T Consensus 7 ~vlITGas~gIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~ 46 (247)
T 3lyl_A 7 VALVTGASRGIGFEVAHALASK--GATVVGTATSQASAEKFE 46 (247)
T ss_dssp EEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 456666 589999999999999 999999999998877654
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.02 E-value=0.26 Score=46.16 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=33.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..+..+... |. +|+++|+++++.+.+++
T Consensus 195 ~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~ 235 (374)
T 1cdo_A 195 TCAVFGLGAVGLAAVMGCHSA--GAKRIIAVDLNPDKFEKAKV 235 (374)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHH
Confidence 689999999999776665555 77 89999999999887765
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.048 Score=51.55 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=30.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
+|.|||.|..|+.+|..|++. |++|+++|+++.
T Consensus 28 dV~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 60 (398)
T 2xdo_A 28 NVAIIGGGPVGLTMAKLLQQN--GIDVSVYERDND 60 (398)
T ss_dssp EEEEECCSHHHHHHHHHHHTT--TCEEEEEECSSS
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCC
Confidence 799999999999999999998 999999998753
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.98 E-value=0.74 Score=40.61 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=33.6
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++-|.| .|.+|..+|..|++. |++|++.++++++.+.+.+
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~ 53 (264)
T 3ucx_A 13 VVVISGVGPALGTTLARRCAEQ--GADLVLAARTVERLEDVAK 53 (264)
T ss_dssp EEEEESCCTTHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHC--cCEEEEEeCCHHHHHHHHH
Confidence 455666 578999999999999 9999999999988776543
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.19 Score=47.31 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=39.9
Q ss_pred ceEEEEc-CChhHHHHHH-HHHHcC-CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIG-AGYVGGPTMA-VIALKC-PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~-~la~~~-~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
|||+||| .||+|.-+.. .|.++. |..++..+..+. .|.....-.+. .-.+.-.+++++ +++
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-------aG~~~~~~~~~--------~~~~~~~~~~~~-~~~ 64 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-------IGVPAPNFGKD--------AGMLHDAFDIES-LKQ 64 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-------TTSBCCCSSSC--------CCBCEETTCHHH-HTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-------cCcCHHHhCCC--------ceEEEecCChhH-hcc
Confidence 7999999 5999999998 777651 023555554321 12110000000 011222234444 789
Q ss_pred CcEEEEecc
Q 017997 79 ADIVFVSVN 87 (362)
Q Consensus 79 aDvVii~vp 87 (362)
+|+||.|+|
T Consensus 65 ~Dvvf~a~~ 73 (370)
T 3pzr_A 65 LDAVITCQG 73 (370)
T ss_dssp CSEEEECSC
T ss_pred CCEEEECCC
Confidence 999999976
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.041 Score=53.13 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=32.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|+|.|||.|.-|+..|..|++.++|++|+++|.++
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~ 37 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQA 37 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCC
Confidence 79999999999999999999886789999999875
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.53 Score=41.40 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=32.9
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++-|.| .|.+|..+|..|++. |++|++.|++++..+.+.
T Consensus 14 ~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~ 53 (256)
T 3gaf_A 14 VAIVTGAAAGIGRAIAGTFAKA--GASVVVTDLKSEGAEAVA 53 (256)
T ss_dssp EEEECSCSSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 345555 689999999999999 999999999998877654
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.52 Score=41.53 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=33.6
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
+|-|.| .|.+|..+|..|++. |++|++.++++++.+.+.
T Consensus 31 ~vlITGas~gIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~ 70 (262)
T 3rkr_A 31 VAVVTGASRGIGAAIARKLGSL--GARVVLTARDVEKLRAVE 70 (262)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 466666 599999999999999 999999999998877654
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.55 Score=41.22 Aligned_cols=41 Identities=12% Similarity=0.060 Sum_probs=34.7
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++|-|.|. |.+|..+|..|++. |++|++.++++++.+.+.+
T Consensus 6 k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~ 47 (254)
T 1hdc_A 6 KTVIITGGARGLGAEAARQAVAA--GARVVLADVLDEEGAATAR 47 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 45777775 89999999999999 9999999999987766543
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.41 Score=44.66 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=33.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..++.+... |. +|+++|+++++.+.+++
T Consensus 193 ~VlV~GaG~vG~~avqla~~~--Ga~~Vi~~~~~~~~~~~~~~ 233 (373)
T 2fzw_A 193 VCAVFGLGGVGLAVIMGCKVA--GASRIIGVDINKDKFARAKE 233 (373)
T ss_dssp EEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence 689999999999777666666 77 89999999999887764
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.045 Score=52.15 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=30.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
|++|.|||.|..|++.|..|++. |++|++++.+
T Consensus 1 ~~dVvVIGaG~aGl~aA~~L~~~--G~~V~vlE~~ 33 (431)
T 3k7m_X 1 MYDAIVVGGGFSGLKAARDLTNA--GKKVLLLEGG 33 (431)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHc--CCeEEEEecC
Confidence 57899999999999999999999 9999999974
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.028 Score=50.09 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=30.0
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
++|.|.| .|.+|..++..|++. |++|++.++++.
T Consensus 4 k~vlVTGasg~IG~~la~~L~~~--G~~V~~~~r~~~ 38 (267)
T 3rft_A 4 KRLLVTGAAGQLGRVMRERLAPM--AEILRLADLSPL 38 (267)
T ss_dssp EEEEEESTTSHHHHHHHHHTGGG--EEEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CCEEEEEecCCc
Confidence 4577888 699999999999999 999999999864
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.13 Score=48.09 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=34.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
.+|.|+|+|.+|+..+..+... |.+|+++++++++.+.+++
T Consensus 191 ~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~ 231 (363)
T 3uog_A 191 DRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAFA 231 (363)
T ss_dssp CEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHHH
Confidence 3789999999998777666666 8999999999999887765
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=93.84 E-value=0.44 Score=42.60 Aligned_cols=40 Identities=20% Similarity=0.120 Sum_probs=34.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++|.|.|. |.+|..++..|++. |++|+++++++++++.+.
T Consensus 29 k~vlITGasggIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~ 69 (286)
T 1xu9_A 29 KKVIVTGASKGIGREMAYHLAKM--GAHVVVTARSKETLQKVV 69 (286)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 35777775 99999999999999 999999999998877654
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.43 Score=46.21 Aligned_cols=41 Identities=15% Similarity=0.368 Sum_probs=36.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD 45 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~ 45 (362)
.+|.|+|.|.+|..+|..|.+ +++|.+++.|+++++.+.+.
T Consensus 236 ~~v~I~GgG~ig~~lA~~L~~---~~~v~iIE~d~~r~~~la~~ 276 (461)
T 4g65_A 236 RRIMIVGGGNIGASLAKRLEQ---TYSVKLIERNLQRAEKLSEE 276 (461)
T ss_dssp CEEEEECCSHHHHHHHHHHTT---TSEEEEEESCHHHHHHHHHH
T ss_pred cEEEEEcchHHHHHHHHHhhh---cCceEEEecCHHHHHHHHHH
Confidence 479999999999999998854 69999999999999998763
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.057 Score=48.95 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=31.3
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|+|.|.|. |++|..++..|++. |++|+++++++.
T Consensus 8 ~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~ 42 (321)
T 3vps_A 8 HRILITGGAGFIGGHLARALVAS--GEEVTVLDDLRV 42 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCCEEEECCCSS
T ss_pred CeEEEECCCChHHHHHHHHHHHC--CCEEEEEecCCc
Confidence 68999997 99999999999999 999999999754
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.82 E-value=0.46 Score=41.30 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=34.0
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++-|.| .|.+|..+|..|++. |++|+++++++++.+.+.+
T Consensus 16 ~vlITGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~ 56 (247)
T 3i1j_A 16 VILVTGAARGIGAAAARAYAAH--GASVVLLGRTEASLAEVSD 56 (247)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHC--CCEEEEEecCHHHHHHHHH
Confidence 466667 589999999999999 9999999999988776543
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.81 Score=39.92 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=32.9
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
+|.|.| .|.+|..++..|++. |++|+++++++++.+.+
T Consensus 15 ~vlItGasggiG~~la~~l~~~--G~~V~~~~r~~~~~~~~ 53 (260)
T 3awd_A 15 VAIVTGGAQNIGLACVTALAEA--GARVIIADLDEAMATKA 53 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHH
Confidence 577776 599999999999999 99999999998876654
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.41 Score=43.99 Aligned_cols=110 Identities=16% Similarity=0.202 Sum_probs=65.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhh----
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---- 76 (362)
.+|..||+|.-+. +..+++..++.+|+++|++++.++..++..... ..+++ ..++++ ..|..+.+
T Consensus 118 ~~VLdiG~G~G~~--~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~-~~~~~-------~~~v~~~~~D~~~~l~~~~ 187 (321)
T 2pt6_A 118 KNVLVVGGGDGGI--IRELCKYKSVENIDICEIDETVIEVSKIYFKNI-SCGYE-------DKRVNVFIEDASKFLENVT 187 (321)
T ss_dssp CEEEEEECTTCHH--HHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTT-SGGGG-------STTEEEEESCHHHHHHHCC
T ss_pred CEEEEEcCCccHH--HHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhh-ccccC-------CCcEEEEEccHHHHHhhcC
Confidence 4799999998654 445555534679999999999998776532111 00010 123443 34543322
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCC
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv 129 (362)
...|+|++..+.|... ..++ +-.+.++.+.+.|+++.+++..+..
T Consensus 188 ~~fDvIi~d~~~p~~~-------~~~l-~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 188 NTYDVIIVDSSDPIGP-------AETL-FNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp SCEEEEEEECCCSSSG-------GGGG-SSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCceEEEECCcCCCCc-------chhh-hHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 3579999876544321 0011 0156778888899988877665543
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.056 Score=51.13 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=30.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|+|.|||.|..|+..|..|++. |++|++++.+.
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~--g~~v~v~E~~~ 36 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEK--GHQVHIIDQRD 36 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSS
T ss_pred CCEEEECcCHHHHHHHHHHHHC--CCcEEEEEecC
Confidence 6899999999999999999998 99999999864
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.73 E-value=0.27 Score=46.01 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=33.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|...+..+... |. +|+++|+++++.+.+++
T Consensus 193 ~VlV~GaG~vG~~a~qlak~~--Ga~~Vi~~~~~~~~~~~a~~ 233 (371)
T 1f8f_A 193 SFVTWGAGAVGLSALLAAKVC--GASIIIAVDIVESRLELAKQ 233 (371)
T ss_dssp EEEEESCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH
Confidence 689999999999776665556 77 69999999999887765
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.72 E-value=0.11 Score=45.25 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=35.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++|.|.|. |.+|..++..|++. |++|++++++++..+.+.+
T Consensus 8 ~~vlVTGasggiG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~ 49 (244)
T 1cyd_A 8 LRALVTGAGKGIGRDTVKALHAS--GAKVVAVTRTNSDLVSLAK 49 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 46888875 99999999999999 9999999999988776543
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.55 Score=40.87 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=33.8
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++|.|.| .|.+|..++..|++. |++|++.+++++..+.+.
T Consensus 12 ~~vlVtGasggiG~~la~~l~~~--G~~V~~~~r~~~~~~~~~ 52 (255)
T 1fmc_A 12 KCAIITGAGAGIGKEIAITFATA--GASVVVSDINADAANHVV 52 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTT--TCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHH
Confidence 3577777 599999999999999 999999999988766543
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.69 E-value=0.38 Score=45.15 Aligned_cols=40 Identities=20% Similarity=0.167 Sum_probs=33.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..++.+... | .+|+++++++++.+.+++
T Consensus 198 ~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~~~~ 238 (380)
T 1vj0_A 198 TVVIQGAGPLGLFGVVIARSL--GAENVIVIAGSPNRLKLAEE 238 (380)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TBSEEEEEESCHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHc--CCceEEEEcCCHHHHHHHHH
Confidence 689999999999776665555 8 699999999999988775
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.048 Score=51.70 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=30.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|.|||.|..|+.+|..|++. |++|+++++++
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~--G~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKS--GFKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTT--TCCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCC
Confidence 3799999999999999999998 99999999863
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.56 Score=40.60 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=33.1
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
+|.|.| .|.+|..++..|++. |++|+++++++++.+.+.
T Consensus 9 ~vlVtGasggiG~~la~~l~~~--G~~V~~~~r~~~~~~~~~ 48 (248)
T 2pnf_A 9 VSLVTGSTRGIGRAIAEKLASA--GSTVIITGTSGERAKAVA 48 (248)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHC--CCEEEEEeCChHHHHHHH
Confidence 466666 699999999999999 999999999988776553
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=93.65 E-value=0.041 Score=51.80 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=31.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.+|.|||.|..|+.+|..|++. |++|+++|+++.
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 36 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTP 36 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCH
T ss_pred ccEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCC
Confidence 3799999999999999999999 999999998754
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.094 Score=45.42 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=35.3
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|++|-|.| .|.+|..+|..|++. |++|++.++++++++.+.+
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~ 43 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAE--GKATYLTGRSESKLSTVTN 43 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHH
T ss_pred CCEEEEecCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 44577777 589999999999999 9999999999999887765
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.86 Score=39.74 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=33.3
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++.|.| .|.+|..+|..|++. |++|++.++++++.+.+.
T Consensus 9 ~~lVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~ 48 (247)
T 2jah_A 9 VALITGASSGIGEATARALAAE--GAAVAIAARRVEKLRALG 48 (247)
T ss_dssp EEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 466666 689999999999999 999999999988776654
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.17 Score=46.99 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=32.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..++.+... |. +|+++|+++++.+.+++
T Consensus 169 ~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~ 209 (352)
T 3fpc_A 169 TVCVIGIGPVGLMSVAGANHL--GAGRIFAVGSRKHCCDIALE 209 (352)
T ss_dssp CEEEECCSHHHHHHHHHHHTT--TCSSEEEECCCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH
Confidence 689999999998665554444 87 89999999998887765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 362 | ||||
| d1mv8a2 | 202 | c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pse | 3e-24 | |
| d1dlja1 | 98 | a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (U | 7e-21 | |
| d1dlja2 | 196 | c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGD | 6e-19 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 7e-19 | |
| d1mv8a1 | 98 | a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, | 1e-15 | |
| d1mv8a3 | 136 | c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, | 9e-08 | |
| d1dlja3 | 108 | c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UD | 0.001 |
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 96.6 bits (239), Expect = 3e-24
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 11/197 (5%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLD-GVVKQC 61
+I G GYVG ++ + EV VD+S ++I+ N + PI EPGL+ + +
Sbjct: 2 RISIFGLGYVGAVCAGCLSARG--HEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR 59
Query: 62 RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
+ L +TD +K V ++D+ F+ V + T I + S+
Sbjct: 60 QTGRLSGTTDFKKAVLDSDVSFICVG-TPSKKNGDLDLGYIETVCREIGFAIREKSERHT 118
Query: 122 IVVEKSTVPVKTAEAIEKILTHN---SKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGG 178
+VV + +P + ++ G+ F + +NPEFL E TAI+D P +IG
Sbjct: 119 VVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGE 178
Query: 179 RETPEGQKAVKALKDVY 195
++ L+++Y
Sbjct: 179 ----LDKQTGDLLEEIY 191
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} Length = 98 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Score = 83.9 bits (207), Expect = 7e-21
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 210 WSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFG 269
AE KL AN +LA R++ N + E+ N + + D RIG + N S G+G
Sbjct: 2 SEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYG 61
Query: 270 GSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSR 309
G KD L+ N +P + ++ N+ +KS
Sbjct: 62 GYSLPKDTKQLLA--NYNNIP--QTLIEAIVSSNNVRKSY 97
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Score = 81.6 bits (200), Expect = 6e-19
Identities = 43/204 (21%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KI G+GYVG +++L+ EV +VDI S+++ N+ PI + ++ +
Sbjct: 2 KIAVAGSGYVGLSLGVLLSLQN---EVTIVDILPSKVDKINNGLSPIQDEYIE---YYLK 55
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
K L ++ + + V + TPT D + E+ + + V S
Sbjct: 56 SKQLSIKATLDSKAAYKEAELVIIATPTNYN--SRINYFDTQHVETVIKEVLSV-NSHAT 112
Query: 123 VVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE-- 180
++ KST+P+ + + +I+ +PEFL E A+ D P R+++ E
Sbjct: 113 LIIKSTIPIGFITEMRQK------FQTDRIIFSPEFLRESKALYDNLYPSRIIVSCEEND 166
Query: 181 TPEGQKAVKALKDVYAHWVPEDRI 204
+P+ + + + ++ +
Sbjct: 167 SPKVKADAEKFALLLKSAAKKNNV 190
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 81.1 bits (199), Expect = 7e-19
Identities = 29/203 (14%), Positives = 58/203 (28%), Gaps = 24/203 (11%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
+G G G A +ALK V DI RI I +G
Sbjct: 3 TYAVLGLGNGGHAFAAYLALKG--QSVLAWDIDAQRIKEIQDRGAII----AEGPGLAGT 56
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
++D+ V +AD++ + V + S A IA ++
Sbjct: 57 AHPDLLTSDIGLAVKDADVILIVVPAI---------------HHASIAANIASYISEGQL 101
Query: 123 VVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE---GTAIQDLFNPDRVLIGGR 179
++ E + + + + + S+ F + +
Sbjct: 102 IILNPGATGGALEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACL 161
Query: 180 ETPEGQKAVKALKDVYAHWVPED 202
+ A++ + V +V +
Sbjct: 162 PAAKAGWALEQIGSVLPQYVAVE 184
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 98 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 69.4 bits (169), Expect = 1e-15
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 4/98 (4%)
Query: 211 SAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVA--FAVGTDSRIGPKFLNASVGF 268
AE+ K N + A +++ N + + +A G + +V + ++ F
Sbjct: 3 VAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAF 62
Query: 269 GGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQ 306
GGSC KD+ L Y + +++ N Q
Sbjct: 63 GGSCLPKDVRALTYRASQLDVE--HPMLGSLMRSNSNQ 98
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 48.2 bits (114), Expect = 9e-08
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 311 VNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
V + + + +K+ +LG +FK T D RE+P ++
Sbjct: 1 VQKAF-DLITSHDTRKVGLLGLSFKAGTDDLRESPLVE 37
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} Length = 108 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Score = 36.4 bits (84), Expect = 0.001
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 312 NRVVASMFNTVSN-KKIAVLGFAFKKDTGDTRETPAID 348
+++ + S K + V K ++ + RE+ D
Sbjct: 2 KQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKD 39
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 362 | |||
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 100.0 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 99.97 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 99.94 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 99.94 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.89 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.85 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.84 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.84 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.78 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.73 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.73 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.72 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.68 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.67 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.67 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.62 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.59 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.59 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.52 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.5 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.48 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.27 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.23 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 99.21 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 99.17 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 99.02 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.98 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.84 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.84 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.83 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.81 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.8 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.75 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 98.74 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.74 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.7 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.65 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 98.62 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.59 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.57 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.55 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.55 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.48 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.48 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.47 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.45 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.4 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.39 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.39 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.37 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.36 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.35 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.33 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.32 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.31 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.29 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.29 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 98.27 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.25 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.25 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 98.18 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 98.18 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.16 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.15 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.1 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 98.09 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.09 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.08 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 98.02 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.02 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.01 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.98 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.88 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.81 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.8 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.74 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.74 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.73 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.71 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.69 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.62 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.54 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 97.49 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 97.45 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.41 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.39 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.39 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 97.34 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 97.32 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 97.3 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.29 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 97.28 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.21 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.17 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.1 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.1 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.07 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.97 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.96 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.94 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.93 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.87 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.86 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.83 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 96.77 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.74 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.67 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 96.64 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.62 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 96.59 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.49 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.48 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 96.43 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.37 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 96.36 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.34 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 96.33 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.31 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.3 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.25 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 96.25 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 96.23 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.23 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.22 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 96.21 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 96.19 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.17 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 96.17 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 96.11 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 96.1 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 96.1 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.09 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 96.02 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.97 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.96 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.95 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 95.94 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.93 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 95.93 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.93 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.91 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.91 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 95.86 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.85 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.85 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.83 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 95.81 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 95.8 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 95.78 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.75 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.73 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.71 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 95.71 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.7 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 95.69 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.69 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.68 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.65 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.65 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 95.63 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.61 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 95.6 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 95.6 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 95.53 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 95.53 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 95.53 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.5 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 95.5 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 95.48 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.43 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.4 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.36 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 95.34 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 95.34 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 95.33 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.32 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 95.29 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 95.28 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 95.25 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 95.19 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 95.17 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 95.13 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 95.08 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.07 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 95.05 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 95.05 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 95.04 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 95.0 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 94.97 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 94.96 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.96 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 94.93 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 94.88 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.84 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 94.83 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 94.72 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 94.72 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 94.64 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 94.62 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 94.6 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 94.59 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 94.56 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 94.55 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 94.54 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.51 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 94.5 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 94.48 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 94.47 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 94.4 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 94.38 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 94.31 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 94.15 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 94.12 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 94.06 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.0 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 94.0 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 93.96 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 93.88 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 93.85 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 93.84 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 93.78 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 93.77 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 93.77 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 93.75 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 93.66 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 93.65 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 93.54 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 93.45 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 93.38 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 93.37 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.35 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 93.25 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 93.25 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 93.21 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 93.2 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 93.16 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 93.05 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 93.04 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 93.02 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 92.96 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 92.88 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 92.86 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 92.83 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 92.63 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 92.59 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 92.59 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 92.54 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 92.42 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 92.33 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 92.26 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 92.24 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 92.12 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 91.97 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 91.92 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 91.87 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 91.77 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 91.76 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 91.54 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 91.39 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 91.29 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 91.28 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 91.26 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 91.24 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 91.12 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 90.96 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 90.87 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 90.85 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 90.84 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 90.81 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 90.77 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 90.69 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 90.65 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 90.65 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 90.54 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 90.51 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 90.49 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 90.38 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 90.37 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 90.27 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 90.23 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 90.22 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 90.21 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 90.07 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 90.0 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 89.98 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 89.97 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 89.96 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 89.75 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 89.73 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 89.72 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 89.66 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 89.57 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 89.52 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 89.45 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 89.43 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 89.4 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 89.36 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 89.31 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 89.28 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 89.18 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 89.12 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 89.12 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 89.1 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 89.04 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 88.98 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 88.94 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 88.85 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 88.76 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 88.72 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 88.58 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 88.52 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 88.39 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 88.3 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 88.22 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 88.16 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 87.79 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 87.76 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 87.75 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 87.65 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 87.57 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 87.57 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 87.38 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 87.32 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 87.15 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 87.07 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 86.99 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 86.76 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 86.45 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 86.39 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 86.23 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 86.21 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 86.18 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 86.06 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 85.71 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 85.53 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 85.31 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 85.3 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 85.02 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 84.9 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 84.51 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 83.94 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 83.84 | |
| d1ofua1 | 198 | Cell-division protein FtsZ {Pseudomonas aeruginosa | 83.71 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 83.7 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 83.56 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 82.93 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 82.92 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.72 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 82.66 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 82.23 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.21 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 82.09 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 82.03 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 81.75 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 81.58 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 81.21 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 81.02 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 80.95 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 80.34 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 80.3 |
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=2.5e-36 Score=264.04 Aligned_cols=187 Identities=33% Similarity=0.510 Sum_probs=167.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+||+|+++|.+||++ ||+|++||.|+++++.|+++..|++|+++.+.+.+ ...+++.+++|..++++++|
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~--g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d 78 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD 78 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred CEEEEECCCHhHHHHHHHHHhC--CCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCC
Confidence 8999999999999999999999 99999999999999999999999999999988765 45778999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhc---CCCCEEEEeeCCccccHHHH-HHHHHhccC---CCceEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVS---KSDKIVVEKSTVPVKTAEAI-EKILTHNSK---GIKFQIL 153 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l---~~~~iVv~~STv~~gt~~~l-~~~l~~~~~---g~~~~v~ 153 (362)
++|+|||||.+.++ .+|.+.+.++.+.+...+ .++++|+++||++|||++++ .+.+++... +.+|.++
T Consensus 79 ~i~i~VpTP~~~~~-----~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~ 153 (202)
T d1mv8a2 79 VSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVG 153 (202)
T ss_dssp EEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEE
T ss_pred EEEEecCccccccc-----cccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccch
Confidence 99999999987755 899999999988877654 47889999999999999876 455655432 6789999
Q ss_pred eCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 017997 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (362)
Q Consensus 154 ~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~ 199 (362)
|+|||+.||++++++.+++++|+|+.+ +++.+.++++|+.+.
T Consensus 154 ~~PE~~~~G~a~~d~~~~~~iViG~~~----~~~~~~~~~ly~~i~ 195 (202)
T d1mv8a2 154 TNPEFLRESTAIKDYDFPPMTVIGELD----KQTGDLLEEIYRELD 195 (202)
T ss_dssp ECCCCCCTTSHHHHHHSCSCEEEEESS----HHHHHHHHHHHTTSS
T ss_pred hhhhhhcccchhhhhcCCCeEEEEeCC----HHHHHHHHHHHHhcC
Confidence 999999999999999999999899884 789999999999985
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.97 E-value=2.8e-30 Score=224.32 Aligned_cols=165 Identities=25% Similarity=0.361 Sum_probs=140.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+||+|+++|..|+ . ||+|++||+|+++++.|++|..|++|+++++++... ..++.++++...+..++|+
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~--g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i 76 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-L--QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSK-QLSIKATLDSKAAYKEAEL 76 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-T--TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS-CCCEEEESCHHHHHHHCSE
T ss_pred CEEEEECCChhHHHHHHHHH-C--CCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhh-hhhhhccchhhhhhhcccc
Confidence 89999999999999998886 5 899999999999999999999999999999887653 4557788888777899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (362)
+++|||||.+.+ ....+++.+.++.+.+... +++.+|+.+||+|||+++++.+.+.+ +.++|+|||+.|
T Consensus 77 i~v~vpt~~~~~----~~~~~~~~v~~~~~~~~~~-~~~~~iii~Stv~pgt~~~~~~~~~~------~~~~~~PE~i~~ 145 (196)
T d1dlja2 77 VIIATPTNYNSR----INYFDTQHVETVIKEVLSV-NSHATLIIKSTIPIGFITEMRQKFQT------DRIIFSPEFLRE 145 (196)
T ss_dssp EEECCCCCEETT----TTEECCHHHHHHHHHHHHH-CSSCEEEECSCCCTTHHHHHHHHTTC------SCEEECCCCCCT
T ss_pred ccccCCcccccc----CCCcceeEEeehhhhhhhc-ccceeEEeeeecCceeeeeeeeccch------hhhccchhhcch
Confidence 999999997653 2246778888888777665 57789999999999999887655433 467899999999
Q ss_pred CccccccCCCCeEEEecCCC
Q 017997 162 GTAIQDLFNPDRVLIGGRET 181 (362)
Q Consensus 162 g~a~~~~~~~~~viiG~~~~ 181 (362)
|++++++.+|+++++|+.+.
T Consensus 146 G~ai~d~~~p~riv~G~~~~ 165 (196)
T d1dlja2 146 SKALYDNLYPSRIIVSCEEN 165 (196)
T ss_dssp TSTTHHHHSCSCEEEECCTT
T ss_pred hhhHhhccCCCEEEEeCCHh
Confidence 99999999999999887643
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=2.6e-27 Score=180.70 Aligned_cols=96 Identities=22% Similarity=0.400 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCC--CCCccCCCCCcccChhHhHHHHHHHHHh
Q 017997 209 LWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIG--PKFLNASVGFGGSCFQKDILNLVYICEC 286 (362)
Q Consensus 209 ~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~~~i~--~~~~~~g~g~gg~cl~kD~~~l~~~a~~ 286 (362)
+++||++|++.|+|++++|+|+||+..+|+++|+|..+|.++++.|+|++ .++++||+||||+|||||+.+|.+.+++
T Consensus 1 ie~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~ri~~~~~~~~pG~G~GG~ClpKD~~al~~~a~~ 80 (98)
T d1mv8a1 1 VEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQ 80 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTTTTSSTTCSCCSCCCSSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCccccccccccCCcccCCccccchhHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999987 4578899999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHh
Q 017997 287 NGLPEVAEYWKQVIKINDYQ 306 (362)
Q Consensus 287 ~g~~~~~~~~~~~~~~N~~~ 306 (362)
.|++ .+++++++++|+.|
T Consensus 81 ~~~~--~~ll~~~~~~N~~q 98 (98)
T d1mv8a1 81 LDVE--HPMLGSLMRSNSNQ 98 (98)
T ss_dssp TTCC--CTTGGGHHHHHHHH
T ss_pred cCCC--hHHHHHHHHHHhCC
Confidence 9999 88999999999986
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.94 E-value=2.1e-26 Score=175.89 Aligned_cols=97 Identities=30% Similarity=0.471 Sum_probs=91.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCC
Q 017997 210 WSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGL 289 (362)
Q Consensus 210 ~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~ 289 (362)
.+||++||+.|+|++++|+|+||+..+|+++|+|..+|+++++.++|++.+++.||+||||+|||||+.+|+ +.+.|+
T Consensus 2 ~eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~~~~~~~~~pg~g~GG~ClpKD~~al~--~~~~~~ 79 (98)
T d1dlja1 2 SEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQLL--ANYNNI 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTTCSSSCCCCSSCCSSHHHHHHHHHH--HHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccccCCccccCCCCcccccCcccHHHHH--HHhcCC
Confidence 579999999999999999999999999999999999999999999999988999999999999999999996 456677
Q ss_pred chhHHHHHHHHHHHHHhHHHH
Q 017997 290 PEVAEYWKQVIKINDYQKSRF 310 (362)
Q Consensus 290 ~~~~~~~~~~~~~N~~~~~~~ 310 (362)
+ .+++++++++|+.|++++
T Consensus 80 ~--~~ll~~~~~~N~~~~~~i 98 (98)
T d1dlja1 80 P--QTLIEAIVSSNNVRKSYI 98 (98)
T ss_dssp S--CSHHHHHHHHHHHHHHHH
T ss_pred C--cHHHHHHHHHHHhhhhhC
Confidence 7 789999999999999875
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.89 E-value=4.5e-23 Score=172.78 Aligned_cols=151 Identities=17% Similarity=0.249 Sum_probs=125.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||||||+|.||.+||.+|+++ ||+|++||+++++++.+.+. .....+++.++++++|+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~--G~~V~~~d~~~~~~~~~~~~-------------------~~~~~~~~~e~~~~~d~ 59 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKA--GYSLVVSDRNPEAIADVIAA-------------------GAETASTAKAIAEQCDV 59 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCEECSSHHHHHHHCSE
T ss_pred CEEEEEehhHHHHHHHHHHHHC--CCeEEEEeCCcchhHHHHHh-------------------hhhhcccHHHHHhCCCe
Confidence 8999999999999999999999 99999999999999988763 24667888999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
||+|||++. .+++++ +.+.+.++++++|++.||+.|.+.+++.+.+.+.+ +.++.+|..
T Consensus 60 ii~~v~~~~--------------~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g----~~~vdapv~ 121 (161)
T d1vpda2 60 IITMLPNSP--------------HVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKG----VEMLDAPVS 121 (161)
T ss_dssp EEECCSSHH--------------HHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTT----CEEEECCEE
T ss_pred EEEEcCCHH--------------HHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcC----Cceeccccc
Confidence 999998642 355555 56888899999999999999999998888887642 456788877
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~ 199 (362)
..+..+..+.. .+++||+ ++.+++++++|+.++
T Consensus 122 gg~~~a~~g~l---~~~~gG~-----~~~~~~~~~il~~~~ 154 (161)
T d1vpda2 122 GGEPKAIDGTL---SVMVGGD-----KAIFDKYYDLMKAMA 154 (161)
T ss_dssp SHHHHHHHTCE---EEEEESC-----HHHHHHHHHHHHTTE
T ss_pred CChhHHhcCCe---EEEEcCC-----HHHHHHHHHHHHHhc
Confidence 66655544322 4778987 788999999999986
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.85 E-value=2.2e-21 Score=162.55 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=121.7
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+||+|||+|.||.+||.+|+++ ||+|++||+++++.+.+.+. ......++.+++..+|
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~--g~~v~~~d~~~~~~~~~~~~-------------------~~~~~~~~~e~~~~~d 59 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKA--GYLLNVFDLVQSAVDGLVAA-------------------GASAARSARDAVQGAD 59 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHT-------------------TCEECSSHHHHHTSCS
T ss_pred CCEEEEEEEHHHHHHHHHHHHHC--CCeEEEEECchhhhhhhhhh-------------------hccccchhhhhccccC
Confidence 78999999999999999999999 99999999999999887652 2455677888899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+|++|||.+. .+++++ ..+.+.+.++++|+++||+.|.++..+.+.+++.+ +.++.+|.
T Consensus 60 iii~~v~~~~--------------~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~g----i~~~dapv 121 (162)
T d3cuma2 60 VVISMLPASQ--------------HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERG----LAMLDAPV 121 (162)
T ss_dssp EEEECCSCHH--------------HHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCE
T ss_pred eeeecccchh--------------hHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCC----CcEEeccc
Confidence 9999998532 234444 34677889999999999999999999988887753 34456776
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~ 199 (362)
...|..+..+.. .+++||+ ++++++++++++.++
T Consensus 122 ~Gg~~~a~~G~l---~~~~gG~-----~~~~~~~~~il~~~~ 155 (162)
T d3cuma2 122 SGGTAGAAAGTL---TFMVGGD-----AEALEKARPLFEAMG 155 (162)
T ss_dssp ESCHHHHHHTCE---EEEEESC-----HHHHHHHHHHHHHHE
T ss_pred ccCccccccCCe---EEEecCC-----HHHHHHHHHHHHHHc
Confidence 655555443322 4778887 788999999999986
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.84 E-value=4.5e-20 Score=154.81 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=119.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCE-EEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNL-FFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l-~~t~d~~~a~~~aD 80 (362)
|||+|||+|.||+++|..|.++ ||+|++||+++++++++++.. .+ ...++. ++++++|
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~------------------~~~~~~~~~-~~~~~~D 59 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQ------------------LVDEAGQDL-SLLQTAK 59 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTT------------------SCSEEESCG-GGGTTCS
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhh------------------ccceeeeec-ccccccc
Confidence 8999999999999999999999 999999999999998876531 11 344554 4589999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
+||+|||. +.+.++++++.+.++++++|++.+++...+.+.+.+..... ...+..++|+..+
T Consensus 60 iIilavp~---------------~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~~~---~~~h~~~~~~~~g 121 (165)
T d2f1ka2 60 IIFLCTPI---------------QLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGF---IGGHPMAGTAAQG 121 (165)
T ss_dssp EEEECSCH---------------HHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHSTTC---EEEEECCCCSCSS
T ss_pred cccccCcH---------------hhhhhhhhhhhhhcccccceeeccccchHHHHHHHHhhccc---ccceeeecccccc
Confidence 99999873 35688999999999999999988877655555444332211 1124456778887
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~ 199 (362)
+.++..+++....+++... ...+++..+.++++|+.++
T Consensus 122 ~~~a~~~l~~~~~~il~~~-~~~~~~~~~~v~~l~~~lG 159 (165)
T d2f1ka2 122 IDGAEENLFVNAPYVLTPT-EYTDPEQLACLRSVLEPLG 159 (165)
T ss_dssp GGGCCTTTTTTCEEEEEEC-TTCCHHHHHHHHHHHGGGT
T ss_pred hhhhcccccCCCeEEEEeC-CCCCHHHHHHHHHHHHHhC
Confidence 8888778776666555322 2235889999999999986
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.84 E-value=6.5e-21 Score=163.37 Aligned_cols=167 Identities=18% Similarity=0.226 Sum_probs=130.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-CCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-QLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|+||+|||+|.||+++|..|+++ ||+|++|+++++.++.|++. ..+.+.|+.. ...++.+++|++++++++
T Consensus 7 m~KI~ViGaG~wGtAlA~~La~~--g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~------l~~~i~~t~~l~~a~~~a 78 (189)
T d1n1ea2 7 LNKAVVFGSGAFGTALAMVLSKK--CREVCVWHMNEEEVRLVNEKRENVLFLKGVQ------LASNITFTSDVEKAYNGA 78 (189)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTT--EEEEEEECSCHHHHHHHHHHTBCTTTSTTCB------CCTTEEEESCHHHHHTTC
T ss_pred eceEEEECCCHHHHHHHHHHHHc--CCeEEEEEecHHHHHHHhhcccccccccccc------cccccccchhhhhccCCC
Confidence 45799999999999999999999 99999999999999999864 4555555543 356799999999999999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-----cCCCCEEEEeeC-CccccHHHHHHHHHhccCCCceEEe
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-----SKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQIL 153 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~-----l~~~~iVv~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~ 153 (362)
|+||+|||+. .++++++++.++ ++++..++..|. +.+++...+.+.+.+..+...+.++
T Consensus 79 d~iiiavPs~---------------~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vl 143 (189)
T d1n1ea2 79 EIILFVIPTQ---------------FLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVL 143 (189)
T ss_dssp SCEEECSCHH---------------HHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEE
T ss_pred CEEEEcCcHH---------------HHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEE
Confidence 9999999853 467777776553 345666666665 7778777777777765443456788
Q ss_pred eCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhcc
Q 017997 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHW 198 (362)
Q Consensus 154 ~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~ 198 (362)
++|.++.+-.. ..|+.+++++.+ .+..+.++++|++.
T Consensus 144 sGP~~A~Ev~~----~~pt~~viAs~~----~~~a~~i~~lfst~ 180 (189)
T d1n1ea2 144 AGPSFAIEVAT----GVFTCVSIASAD----INVARRLQRIMSTG 180 (189)
T ss_dssp ESSCCHHHHHT----TCCEEEEEECSS----HHHHHHHHHHHSCT
T ss_pred ecCCcHHHHHc----CCCcEEEEEeCC----HHHHHHHHHHhCCC
Confidence 99998876432 567778888873 78899999999864
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.78 E-value=2.7e-19 Score=151.63 Aligned_cols=159 Identities=11% Similarity=0.141 Sum_probs=121.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|||+|.||.+||.+|+++ ||+|++|||++++++.+.+....... ........++.+++..+|.
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~~-----------~~~a~~~~~~~~~~~~~~~ 69 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEAKGTK-----------VLGAHSLEEMVSKLKKPRR 69 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTTTTSS-----------CEECSSHHHHHHHBCSSCE
T ss_pred CcEEEEeEhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHhcccccc-----------ccchhhhhhhhhhhcccce
Confidence 4799999999999999999999 99999999999999998764321100 0001112344556789999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (362)
+++|+|.+ ..+.++.+.+.+.++++++|+++||+.|.++.++.+.+.+.+ +.++.+|....+
T Consensus 70 ii~~~~~~--------------~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g----~~~ldapvsGg~ 131 (176)
T d2pgda2 70 IILLVKAG--------------QAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKG----ILFVGSGVSGGE 131 (176)
T ss_dssp EEECSCTT--------------HHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEEEEEESHH
T ss_pred EEEecCch--------------HHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcC----CceeccccccCc
Confidence 99998753 357888899999999999999999999999988887777652 355677766655
Q ss_pred CccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC
Q 017997 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP 200 (362)
Q Consensus 162 g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~ 200 (362)
..+..+ . .+++||+ ++++++++++|+.+..
T Consensus 132 ~~A~~G---~-~~~~gG~-----~~~~~~~~~il~~~~~ 161 (176)
T d2pgda2 132 DGARYG---P-SLMPGGN-----KEAWPHIKAIFQGIAA 161 (176)
T ss_dssp HHHHHC---C-EEEEEEC-----TTTHHHHHHHHHHHSC
T ss_pred ccccCC---c-EEEcCCC-----HHHHHHHHHHHHHHhc
Confidence 555433 1 4778987 5688999999999873
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.73 E-value=1.3e-16 Score=133.97 Aligned_cols=165 Identities=17% Similarity=0.191 Sum_probs=120.0
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh-hhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK-HVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~-a~~~a 79 (362)
|+||+|||+|.||.++|..|.+++...+|++||+|++.++.+++.... -..+++... ...++
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~-----------------~~~~~~~~~~~~~~~ 63 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----------------DEGTTSIAKVEDFSP 63 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----------------SEEESCGGGGGGTCC
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc-----------------hhhhhhhhhhhcccc
Confidence 667999999999999999999983235899999999999887653210 123344433 34589
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeC----
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSN---- 155 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~---- 155 (362)
|+|++|+|. +.+.++++++.++++++++|++.+++.....+.+.+.+.+. ++..+
T Consensus 64 dlIila~p~---------------~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~------~i~~hPm~G 122 (171)
T d2g5ca2 64 DFVMLSSPV---------------RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKR------FVGGHPIAG 122 (171)
T ss_dssp SEEEECSCH---------------HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG------EECEEEECC
T ss_pred ccccccCCc---------------hhhhhhhhhhhccccccccccccccccHHHHHHHHHhhccc------ccccccccc
Confidence 999999873 24678889999999999999998888776667766655543 33444
Q ss_pred CcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEe
Q 017997 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT 206 (362)
Q Consensus 156 Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 206 (362)
+|..++..+..++++...+++. +....+++.++.++++|+.++ ..+..
T Consensus 123 ~e~sG~~~a~~~Lf~g~~~il~-p~~~~~~~~~~~v~~~~~~lG--~~v~~ 170 (171)
T d2g5ca2 123 TEKSGVEYSLDNLYEGKKVILT-PTKKTDKKRLKLVKRVWEDVG--GVVEY 170 (171)
T ss_dssp CSCCSGGGCCSSTTTTCEEEEC-CCSSSCHHHHHHHHHHHHHTT--CEEEE
T ss_pred cccccHHHHHHHhhCCCeEEEe-cCCCCCHHHHHHHHHHHHHcC--CEEEe
Confidence 4666666777777777665553 333446889999999999986 35544
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.73 E-value=1.4e-17 Score=141.47 Aligned_cols=164 Identities=15% Similarity=0.240 Sum_probs=119.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC--CHHHHHHHHcCCC-CCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI--SVSRINAWNSDQL-PIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~--~~~~~~~l~~~~~-~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
|||+|||+|.||+++|..|+++ ||+|++|.| +++.++.+++++. +.+...+ ...++.+++|.++++++
T Consensus 1 MkI~ViGaG~~GtalA~~la~~--g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~ 71 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDN--GNEVRIWGTEFDTEILKSISAGREHPRLGVKL-------NGVEIFWPEQLEKCLEN 71 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH--CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCC-------CSEEEECGGGHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEecccHHHHHHHhhhhhhhhhcchh-------ccccccccccHHHHHhc
Confidence 8999999999999999999999 999999987 6778999987643 3322221 12346788999999999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCC-ccccH-HHHHHHHHhccC--CCceEEee
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV-PVKTA-EAIEKILTHNSK--GIKFQILS 154 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv-~~gt~-~~l~~~l~~~~~--g~~~~v~~ 154 (362)
+|+|++|||+. .++++++++.++++++.+|+.+... +.++. ..+.+.+.+... ...+.+++
T Consensus 72 ad~Ii~avps~---------------~~~~~~~~l~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vls 136 (180)
T d1txga2 72 AEVVLLGVSTD---------------GVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAIT 136 (180)
T ss_dssp CSEEEECSCGG---------------GHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEE
T ss_pred cchhhcccchh---------------hhHHHHHhhccccccceecccccCccccccccccchHHHHhhhcccccceeEEc
Confidence 99999999842 4688999999999877666543333 22221 123344444322 23567889
Q ss_pred CCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhc
Q 017997 155 NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAH 197 (362)
Q Consensus 155 ~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~ 197 (362)
+|.++.+-.. ..|..+++++.+ .+..+.++++|++
T Consensus 137 GP~~A~Ei~~----~~pt~~vias~~----~~~a~~i~~~f~~ 171 (180)
T d1txga2 137 GPAIAREVAK----RMPTTVVFSSPS----ESSANKMKEIFET 171 (180)
T ss_dssp SSCCHHHHHT----TCCEEEEEECSC----HHHHHHHHHHHCB
T ss_pred CCccHHHHHc----CCCcEEEEEcCC----HHHHHHHHHHHCC
Confidence 9998876332 456677888773 7888999999987
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.72 E-value=5e-17 Score=137.63 Aligned_cols=159 Identities=16% Similarity=0.155 Sum_probs=120.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHH---hhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE---KHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~---~a~~~ 78 (362)
|||+|||+|.||.+||.+|+++ ||+|++||+++++.+.+.+....... ...+....+.+ ..+..
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~--G~~V~~~dr~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 68 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEK--GFKVAVFNRTYSKSEEFMKANASAPF-----------AGNLKAFETMEAFAASLKK 68 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHTTTSTT-----------GGGEEECSCHHHHHHHBCS
T ss_pred CEEEEEeehHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHcCCcccc-----------ccchhhhhhhhHHHHhccc
Confidence 8999999999999999999999 99999999999999988653211100 01233333332 23568
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
++.++++++.. ..+.+++..+...+.+++++++.||..|.+++++.+.+.+. .+.++.+|..
T Consensus 69 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~----~~~~ldapv~ 130 (178)
T d1pgja2 69 PRKALILVQAG--------------AATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAA----GLRFLGMGIS 130 (178)
T ss_dssp SCEEEECCCCS--------------HHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTT----TCEEEEEEEE
T ss_pred ceEEEEeecCc--------------chhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhc----ceeEeccccc
Confidence 88999987632 34677888999999999999999999999998888877654 2456777866
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP 200 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~ 200 (362)
..+..+..+ ..+++||+ ++.+++++++|+.+..
T Consensus 131 g~~~~a~~g----~~~mvgG~-----~~~~~~v~pil~~~~~ 163 (178)
T d1pgja2 131 GGEEGARKG----PAFFPGGT-----LSVWEEIRPIVEAAAA 163 (178)
T ss_dssp SHHHHHHHC----CEEEEEEC-----HHHHHHHHHHHHHHSC
T ss_pred CCcchhcCC----cEEEeeCC-----HHHHHHHHHHHHHHhc
Confidence 655444332 14778987 7899999999999873
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.68 E-value=5.5e-17 Score=137.58 Aligned_cols=173 Identities=20% Similarity=0.243 Sum_probs=111.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+||+|||+|.||+.+|..|+++ ||+|++||+++++++.+++.+ ...+.++... .......+++..++++++|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~e~~~~aD 74 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAG-----TAHPDLLTSDIGLAVKDAD 74 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCE-----EECCSEEESCHHHHHTTCS
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhh-----hhhhhhhhhhhHhHhcCCC
Confidence 6999999999999999999999 999999999999999998643 3333333221 1123456788999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC-CCceE----EeeC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQ----ILSN 155 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~-g~~~~----v~~~ 155 (362)
+||+|+|++ .+.++++++.++++++++|+..++...+ ...+...+..... ...+. ..+.
T Consensus 75 ~iii~v~~~---------------~~~~~~~~i~~~l~~~~~iv~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (184)
T d1bg6a2 75 VILIVVPAI---------------HHASIAANIASYISEGQLIILNPGATGG-ALEFRKILRENGAPEVTIGETSSMLFT 138 (184)
T ss_dssp EEEECSCGG---------------GHHHHHHHHGGGCCTTCEEEESSCCSSH-HHHHHHHHHHTTCCCCEEEEESSCSEE
T ss_pred EEEEEEchh---------------HHHHHHHHhhhccCCCCEEEEeCCCCcc-HHHHHHHHHHhcCCCceEEEecCCcce
Confidence 999999853 2578899999999999988765555444 3344455544321 11111 1123
Q ss_pred CcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhcc
Q 017997 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHW 198 (362)
Q Consensus 156 Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~ 198 (362)
+....+|......... ++.++......+++..+.++++|..+
T Consensus 139 ~~~~~~~~v~~~~~~~-~~~~a~~~~~~~~~~~~~l~~~~~~f 180 (184)
T d1bg6a2 139 CRSERPGQVTVNAIKG-AMDFACLPAAKAGWALEQIGSVLPQY 180 (184)
T ss_dssp EECSSTTEEEEEEECS-CEEEEEESGGGHHHHHHHHTTTCTTE
T ss_pred eeEecCCeeEEEeecC-CEEEEEecCCCCHHHHHHHHHhCcCe
Confidence 3444555432211111 23344433333455666666665544
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.8e-16 Score=135.66 Aligned_cols=173 Identities=18% Similarity=0.195 Sum_probs=113.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCC----------CCCCCChHHHHhhhcCCCEEEecC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQL----------PIYEPGLDGVVKQCRGKNLFFSTD 71 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~----------~~~e~~l~~~~~~~~~~~l~~t~d 71 (362)
.||+|||+|.||..+|..++.+ ||+|++||++++.++...+... ....+...+...+...+++..++|
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d 82 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD 82 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred EEEEEECcCHHHHHHHHHHHhC--CCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence 5999999999999999999999 9999999999988775443110 000000000000111256899999
Q ss_pred HHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--CC
Q 017997 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GI 148 (362)
Q Consensus 72 ~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g~ 148 (362)
..+++++||+|+.|+|.. ++.-+++++++.+.+++++++ .++|++++. .+...+....+ |.
T Consensus 83 ~~~a~~~ad~ViEav~E~-------------l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~---~la~~~~~p~r~ig~ 146 (192)
T d1f0ya2 83 AASVVHSTDLVVEAIVEN-------------LKVKNELFKRLDKFAAEHTIFASNTSSLQIT---SIANATTRQDRFAGL 146 (192)
T ss_dssp HHHHTTSCSEEEECCCSC-------------HHHHHHHHHHHTTTSCTTCEEEECCSSSCHH---HHHTTSSCGGGEEEE
T ss_pred hHhhhcccceehhhcccc-------------hhHHHHHHHHHhhhcccCceeeccCcccccc---hhhhhccCHhHEEee
Confidence 988999999999999852 333488999999999999887 445555543 22221111111 22
Q ss_pred ceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCC
Q 017997 149 KFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN 208 (362)
Q Consensus 149 ~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 208 (362)
+| ++|.+..|- ..| +.+..+ ++++++.+.++++.++ +.++.+.|
T Consensus 147 Hf---fnP~~~~~l---------VEI-v~g~~T--~~~~i~~~~~~~~~lg-k~pV~v~D 190 (192)
T d1f0ya2 147 HF---FNPVPVMKL---------VEV-IKTPMT--SQKTFESLVDFSKALG-KHPVSCKD 190 (192)
T ss_dssp EE---CSSTTTCCE---------EEE-ECCTTC--CHHHHHHHHHHHHHTT-CEEEEECS
T ss_pred cc---ccccCcccE---------EEE-cCCCCC--CHHHHHHHHHHHHHcC-CEEEEeec
Confidence 22 355444331 125 455544 6899999999999987 46776654
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.67 E-value=9.6e-17 Score=132.95 Aligned_cols=147 Identities=17% Similarity=0.238 Sum_probs=112.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIV 82 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (362)
||+|||+|.||.+||.+|.++ ||.| +|++++++.+.+.+.. +. ..... +.+.++|++
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~--g~~~-~~~~~~~~~~~~~~~~-----------------~~--~~~~~-~~~~~~~~~ 58 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARR--FPTL-VWNRTFEKALRHQEEF-----------------GS--EAVPL-ERVAEARVI 58 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTT--SCEE-EECSSTHHHHHHHHHH-----------------CC--EECCG-GGGGGCSEE
T ss_pred eEEEEeHHHHHHHHHHHHHhC--CCEE-EEeCCHHHHHHHHHHc-----------------CC--ccccc-ccccceeEE
Confidence 899999999999999999988 8866 5666666665544310 11 22333 447889999
Q ss_pred EEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccccC
Q 017997 83 FVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEG 162 (362)
Q Consensus 83 ii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~g 162 (362)
++|+|.+ ..+......+.+.++++.++++.||+.|.+++++.+.+++. .+.++.+|...++-
T Consensus 59 i~~~~~~--------------~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~----gi~~ldapVsGg~~ 120 (156)
T d2cvza2 59 FTCLPTT--------------REVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREK----GVTYLDAPVSGGTS 120 (156)
T ss_dssp EECCSSH--------------HHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTT----TEEEEECCEESHHH
T ss_pred Eecccch--------------hhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHc----CCeEEeccccCchh
Confidence 9998853 35677888999999999999999999999999998888765 25667889777666
Q ss_pred ccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 017997 163 TAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (362)
Q Consensus 163 ~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~ 199 (362)
.+..+.+ .+++||+ ++.++++++++. +.
T Consensus 121 ~A~~G~L---~~~vgG~-----~~~~~~~~p~L~-~~ 148 (156)
T d2cvza2 121 GAEAGTL---TVMLGGP-----EEAVERVRPFLA-YA 148 (156)
T ss_dssp HHHHTCE---EEEEESC-----HHHHHHHGGGCT-TE
T ss_pred hhccCCE---EEEEeCC-----HHHHHHHHHHHH-hc
Confidence 6544433 4788987 789999999884 65
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.62 E-value=7.9e-16 Score=131.02 Aligned_cols=168 Identities=17% Similarity=0.203 Sum_probs=110.1
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHhhhcCCCEEEec
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----------LPIYEPGLDGVVKQCRGKNLFFST 70 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (362)
+.||+|||+|.||..+|..++.+ |++|++||++++.+++..+.. ..+.+...+. ...++..++
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~-----~~~~i~~~~ 76 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASK--GTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAE-----VLNGIRPTL 76 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHH-----HHHHEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhh-----hhceeeccc
Confidence 46899999999999999999999 999999999998876543210 0000011111 123578888
Q ss_pred CHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--C
Q 017997 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--G 147 (362)
Q Consensus 71 d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g 147 (362)
+.++ +.+||+||.|+|.. ++.-++.+++|.+++++++++ .++|++++. .+...+....+ |
T Consensus 77 ~~~~-~~~adlViEav~E~-------------l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~---~la~~~~~p~r~~g 139 (186)
T d1wdka3 77 SYGD-FGNVDLVVEAVVEN-------------PKVKQAVLAEVENHVREDAILASNTSTISIS---LLAKALKRPENFVG 139 (186)
T ss_dssp SSTT-GGGCSEEEECCCSC-------------HHHHHHHHHHHHTTSCTTCEEEECCSSSCHH---HHGGGCSCGGGEEE
T ss_pred cccc-ccccceeeeeecch-------------HHHHHHHHHHHHhhcCCCeeEEeccccccHH---HHHHhccCchheEe
Confidence 8765 89999999999853 233488999999999999988 445555543 22211111110 2
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCC
Q 017997 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN 208 (362)
Q Consensus 148 ~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 208 (362)
.+| ++|.+..+. ..|+ .+..+ ++++++.+..+++.++ +.++.+.|
T Consensus 140 ~Hf---~nP~~~~~l---------VEiv-~~~~T--~~~~~~~~~~~~~~lg-k~pv~v~d 184 (186)
T d1wdka3 140 MHF---FNPVHMMPL---------VEVI-RGEKS--SDLAVATTVAYAKKMG-KNPIVVND 184 (186)
T ss_dssp EEC---CSSTTTCCE---------EEEE-ECSSC--CHHHHHHHHHHHHHTT-CEEEEEES
T ss_pred ecc---ccCcccCCe---------EEEC-CCCCC--CHHHHHHHHHHHHHcC-CEEEEEec
Confidence 222 345443331 1254 44444 5899999999999987 45676654
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.59 E-value=1.5e-16 Score=139.64 Aligned_cols=167 Identities=19% Similarity=0.123 Sum_probs=124.3
Q ss_pred EEEEcCCh--hHHHHHH------HHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHhhh-cC----------
Q 017997 4 ICCIGAGY--VGGPTMA------VIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQC-RG---------- 63 (362)
Q Consensus 4 I~VIGlG~--~G~~lA~------~la~~~~G~~V~~~d~~~~~-~~~l~~~~~~~~e~~l~~~~~~~-~~---------- 63 (362)
+.++|+|. ||..++. +|++. |+.|++.|.|+++ ++++++|..++++|++.+.+.+. ..
T Consensus 43 ~~~~gagl~~~~~gi~~v~vs~~~fa~~--g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~ 120 (242)
T d2b0ja2 43 SITYGAELLHLVPDVKEVIVSDPCFAEE--PGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH 120 (242)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECGGGGSS--SEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred eeeeeecHHhhhhchhhhhccchhhhhc--CCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence 45667665 6666666 68888 9999999999877 48899999999999999886641 11
Q ss_pred ------CCEEEecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHH
Q 017997 64 ------KNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (362)
Q Consensus 64 ------~~l~~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l 137 (362)
..+++++|..++++++|+||+|||.+. .+.+++++|.++++++++|++.||+++.+..++
T Consensus 121 ~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~--------------~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l 186 (242)
T d2b0ja2 121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKGN--------------KQPDIIKKFADAIPEGAIVTHACTIPTTKFAKI 186 (242)
T ss_dssp SSCGGGGTCEEESCHHHHHTTCSEEEECCTTCT--------------THHHHHHHHGGGSCTTCEEEECSSSCHHHHHHH
T ss_pred cCCHHHCCCEEECCHHHHHhcCCeEEEeeecHH--------------HHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHH
Confidence 126788999999999999999998652 257889999999999999999999999988887
Q ss_pred HHHHHhccCCCceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 017997 138 EKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (362)
Q Consensus 138 ~~~l~~~~~g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~ 199 (362)
.+.+.+. +.+ ++..+|- ..|+.. ....++.++. +++.++++.++|++++
T Consensus 187 ~e~l~~k--gi~-vi~~hp~-a~pe~~-----g~~li~~~~a----seE~iekv~elles~G 235 (242)
T d2b0ja2 187 FKDLGRE--DLN-ITSYHPG-CVPEMK-----GQVYIAEGYA----SEEAVNKLYEIGKIAR 235 (242)
T ss_dssp HHHTTCT--TSE-EEECBCS-SCTTTC-----CCEEEEESSS----CHHHHHHHHHHHHHHH
T ss_pred HHhcccC--CCE-EECCCcc-CcCccc-----cceEEecCCC----CHHHHHHHHHHHHHHC
Confidence 7666543 333 2444442 223221 1112333332 4899999999999997
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.59 E-value=4.4e-16 Score=128.30 Aligned_cols=104 Identities=16% Similarity=0.150 Sum_probs=80.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||.++|.+|+++ ||+|++||+++.....+... .+....+++++++++|+
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~--g~~v~~~~~~~~~~~~~~~~-------------------~~~~~~~~~e~~~~~di 59 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSR--GVEVVTSLEGRSPSTIERAR-------------------TVGVTETSEEDVYSCPV 59 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT--TCEEEECCTTCCHHHHHHHH-------------------HHTCEECCHHHHHTSSE
T ss_pred CEEEEEcHHHHHHHHHHHHHHC--CCeEEEEcCchhHHHHHhhh-------------------cccccccHHHHHhhcCe
Confidence 8999999999999999999999 99999999887665544321 01123456788999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHh
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~ 143 (362)
||+|||.+ ...+++.++.+.+ ++++++.||+.|.+.+++.+.+++
T Consensus 60 Ii~~v~~~---------------~~~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~~~~~ 104 (152)
T d1i36a2 60 VISAVTPG---------------VALGAARRAGRHV--RGIYVDINNISPETVRMASSLIEK 104 (152)
T ss_dssp EEECSCGG---------------GHHHHHHHHHTTC--CSEEEECSCCCHHHHHHHHHHCSS
T ss_pred EEEEecCc---------------hHHHHHHhhcccC--CceeeccCcCCHHHHHHHHHHHhc
Confidence 99999842 1245566666654 578899999999999988777654
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.52 E-value=5e-14 Score=115.74 Aligned_cols=145 Identities=13% Similarity=0.258 Sum_probs=97.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||.+++..|.++ |++|++|++++++.+.+.+. .++.++.+.+++++++|+
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~--~~~i~v~~r~~~~~~~l~~~------------------~g~~~~~~~~~~~~~~dv 60 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQT--PHELIISGSSLERSKEIAEQ------------------LALPYAMSHQDLIDQVDL 60 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTS--SCEEEEECSSHHHHHHHHHH------------------HTCCBCSSHHHHHHTCSE
T ss_pred CEEEEEeccHHHHHHHHHHHhC--CCeEEEEcChHHhHHhhccc------------------cceeeechhhhhhhccce
Confidence 8999999999999999999998 99999999999999887642 124566788888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (362)
||+||+ |. .+ +.+.+.++++++|+ |....-+.+.+.+.+... ..+ +-..|.-...
T Consensus 61 Iilavk-p~--------------~~----~~vl~~l~~~~~ii--s~~agi~~~~l~~~l~~~---~~i-vr~mPN~~~~ 115 (152)
T d2ahra2 61 VILGIK-PQ--------------LF----ETVLKPLHFKQPII--SMAAGISLQRLATFVGQD---LPL-LRIMPNMNAQ 115 (152)
T ss_dssp EEECSC-GG--------------GH----HHHHTTSCCCSCEE--ECCTTCCHHHHHHHHCTT---SCE-EEEECCGGGG
T ss_pred eeeecc-hH--------------hH----HHHhhhcccceeEe--cccccccHHHHHhhhccc---ccc-hhhccchhhh
Confidence 999996 32 12 34455677888776 333333456666655432 122 2123421110
Q ss_pred CccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 017997 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (362)
Q Consensus 162 g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~ 199 (362)
...+...+.++. ..+++..+.++++|+.++
T Consensus 116 ------v~~g~~~~~~~~--~~~~~~~~~v~~l~~~~G 145 (152)
T d2ahra2 116 ------ILQSSTALTGNA--LVSQELQARVRDLTDSFG 145 (152)
T ss_dssp ------GTCEEEEEEECT--TCCHHHHHHHHHHHHTTE
T ss_pred ------cCccceEEEeCC--CCCHHHHHHHHHHHHhCC
Confidence 011112233332 224788999999999986
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.50 E-value=6e-14 Score=115.18 Aligned_cols=136 Identities=17% Similarity=0.192 Sum_probs=96.6
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|+||+||| +|.||.+||.+|.++ ||+|++||+++... .+..++++
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~--G~~V~~~d~~~~~~--------------------------------~~~~~~~~ 54 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRAS--GYPISILDREDWAV--------------------------------AESILANA 54 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTT--TCCEEEECTTCGGG--------------------------------HHHHHTTC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHc--CCCcEecccccccc--------------------------------cchhhhhc
Confidence 56999999 999999999999999 99999999874321 12347889
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|++++|+|.. .+..++.++.+.++++++|++.||+.+...+.+.+.+.. + ++..+|-+.
T Consensus 55 ~~v~~~~~~~---------------~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~~-----~-~v~~hP~~G 113 (152)
T d2pv7a2 55 DVVIVSVPIN---------------LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHTG-----A-VLGLHPMFG 113 (152)
T ss_dssp SEEEECSCGG---------------GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCSS-----E-EEEEEECSC
T ss_pred cccccccchh---------------hheeeeecccccccCCceEEEecccCHHHHHHHHHHccC-----C-EEEecccCC
Confidence 9999998732 356788899999999999999999887776665443221 2 355566443
Q ss_pred ccCccccccCCCCeEEE-ecCCCcchHHHHHHHHHHHhccC
Q 017997 160 AEGTAIQDLFNPDRVLI-GGRETPEGQKAVKALKDVYAHWV 199 (362)
Q Consensus 160 ~~g~a~~~~~~~~~vii-G~~~~~~~~~~~~~~~~l~~~~~ 199 (362)
.+-... ....-++. |+. ++..+++.++|+.++
T Consensus 114 p~~~~~---~g~~~v~~~g~~-----~~~~~~~~~ll~~~G 146 (152)
T d2pv7a2 114 ADIASM---AKQVVVRCDGRF-----PERYEWLLEQIQIWG 146 (152)
T ss_dssp TTCSCC---TTCEEEEEEEEC-----GGGTHHHHHHHHHTT
T ss_pred Cccccc---CCcEEEEecCCC-----HHHHHHHHHHHHHhC
Confidence 322221 11112333 433 567899999999986
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.48 E-value=2.5e-13 Score=111.50 Aligned_cols=146 Identities=10% Similarity=0.186 Sum_probs=94.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||.+++..|.+++ +++|++||+++++.+.+++. ..+..+++.++ +.++|+
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~-~~~i~v~~r~~~~~~~l~~~------------------~~~~~~~~~~~-v~~~Di 60 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQG-GYRIYIANRGAEKRERLEKE------------------LGVETSATLPE-LHSDDV 60 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC-SCEEEEECSSHHHHHHHHHH------------------TCCEEESSCCC-CCTTSE
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CCcEEEEeCChhHHHHhhhh------------------ccccccccccc-ccccce
Confidence 89999999999999999998883 39999999999999988752 13566677665 789999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (362)
||+||+ |. .+.++++++ .+.+++|+ |....-+.+.+++.+..... .--.+...|...+.
T Consensus 61 v~lavk-P~--------------~~~~v~~~l---~~~~~~vi--S~~ag~~~~~l~~~l~~~~~-iir~mpn~p~~~~~ 119 (152)
T d1yqga2 61 LILAVK-PQ--------------DMEAACKNI---RTNGALVL--SVAAGLSVGTLSRYLGGTRR-IVRVMPNTPGKIGL 119 (152)
T ss_dssp EEECSC-HH--------------HHHHHHTTC---CCTTCEEE--ECCTTCCHHHHHHHTTSCCC-EEEEECCGGGGGTC
T ss_pred EEEecC-HH--------------HHHHhHHHH---hhcccEEe--ecccCCCHHHHHHHhCcCcc-eEeecccchhHhcC
Confidence 999997 31 245554443 23456665 55444455666665543210 00011123322222
Q ss_pred CccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 017997 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (362)
Q Consensus 162 g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~ 199 (362)
|. ..+..+. ..+++..+.++++|+.++
T Consensus 120 g~---------t~~~~~~--~~~~~~~~~v~~l~~~~G 146 (152)
T d1yqga2 120 GV---------SGMYAEA--EVSETDRRIADRIMKSVG 146 (152)
T ss_dssp EE---------EEEECCT--TSCHHHHHHHHHHHHTTE
T ss_pred Cc---------EEEEeCC--CCCHHHHHHHHHHHHhCC
Confidence 21 1222222 234778899999999986
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.27 E-value=7.5e-13 Score=108.50 Aligned_cols=148 Identities=14% Similarity=0.115 Sum_probs=85.4
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEEE
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVF 83 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVi 83 (362)
|+|||+|.||.+|+..|.++ ++.+.+|+|++++.+.+.+.. + .. ..+.+++++.+|+||
T Consensus 2 IgfIG~G~mg~~l~~~L~~~--~~~~~v~~R~~~~~~~l~~~~-----------------~-~~-~~~~~~~~~~~DiVi 60 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDR--YEIGYILSRSIDRARNLAEVY-----------------G-GK-AATLEKHPELNGVVF 60 (153)
T ss_dssp CEEESCCHHHHHHHHTTC------CCCEECSSHHHHHHHHHHT-----------------C-CC-CCSSCCCCC---CEE
T ss_pred EEEEeCcHHHHHHHHHHHhC--CCEEEEEeCChhhhcchhhcc-----------------c-cc-ccchhhhhccCcEEE
Confidence 79999999999999999765 555679999999999987621 1 11 234556789999999
Q ss_pred EeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccccCc
Q 017997 84 VSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGT 163 (362)
Q Consensus 84 i~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~g~ 163 (362)
+|||.. .+.++++++ ..++++|+.+|+..+-. . ++.... ..++....|.... .
T Consensus 61 l~v~d~---------------~i~~v~~~l---~~~~~ivi~~s~~~~~~--~----l~~~~~-~~~~~~~~~~~~~--~ 113 (153)
T d2i76a2 61 VIVPDR---------------YIKTVANHL---NLGDAVLVHCSGFLSSE--I----FKKSGR-ASIHPNFSFSSLE--K 113 (153)
T ss_dssp ECSCTT---------------THHHHHTTT---CCSSCCEEECCSSSCGG--G----GCSSSE-EEEEECSCC--CT--T
T ss_pred Eeccch---------------hhhHHHhhh---cccceeeeecccchhhh--h----hhhhcc-ccceeeeeccccc--c
Confidence 999832 234444433 24688888877743321 1 122111 1223333443222 2
Q ss_pred cccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEe
Q 017997 164 AIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT 206 (362)
Q Consensus 164 a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 206 (362)
....+... .++++++ +++.+.++++++.++. .+++.
T Consensus 114 ~~~~~~~~-~~~~~gd-----~~~~~~~~~l~~~lG~-~~~~i 149 (153)
T d2i76a2 114 ALEMKDQI-VFGLEGD-----ERGLPIVKKIAEEISG-KYFVI 149 (153)
T ss_dssp GGGCGGGC-CEEECCC-----TTTHHHHHHHHHHHCS-CEEEC
T ss_pred hhhhccCc-EEEEeCC-----HHHHHHHHHHHHHHCC-cEEEe
Confidence 22222222 2556765 4678999999999973 34443
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=2.4e-12 Score=106.61 Aligned_cols=160 Identities=13% Similarity=0.079 Sum_probs=95.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||+.+|..|++. ||+|++|+|++++.+.++..... ... .......+..+.+..+|+
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~-----~~~-------~~~~~~~~~~~~~~~~D~ 66 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQPYCSVNLVETD-----GSI-------FNESLTANDPDFLATSDL 66 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSEEEEEEECTT-----SCE-------EEEEEEESCHHHHHTCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCceEEEEcCHHHhhhhccccCC-----ccc-------cccccccchhhhhcccce
Confidence 8999999999999999999999 99999999988755443321100 000 011223333455899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (362)
||+|||++ .+.++++.+.+++.++++|+...+ ..+..+.+.+ .....-..+.+......+
T Consensus 67 iii~vka~---------------~~~~~~~~l~~~~~~~~~Iv~~qN-G~~~~~~l~~----~~~~v~~g~~~~~~~~~~ 126 (167)
T d1ks9a2 67 LLVTLKAW---------------QVSDAVKSLASTLPVTTPILLIHN-GMGTIEELQN----IQQPLLMGTTTHAARRDG 126 (167)
T ss_dssp EEECSCGG---------------GHHHHHHHHHTTSCTTSCEEEECS-SSCTTGGGTT----CCSCEEEEEECCEEEEET
T ss_pred EEEeeccc---------------chHHHHHhhccccCcccEEeeccC-cccHHHHHhh----cCCcEEEEEeeEeEEecC
Confidence 99999853 257889999999988888765433 2344333322 110000012222223334
Q ss_pred CccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 017997 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (362)
Q Consensus 162 g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~ 199 (362)
+...+. ... .+.+|..+. ..+..+.+.++|+...
T Consensus 127 ~~i~~~-~~g-~t~ig~~~~--~~~~~~~l~~~l~~a~ 160 (167)
T d1ks9a2 127 NVIIHV-ANG-ITHIGPARQ--QDGDYSYLADILQTVL 160 (167)
T ss_dssp TEEEEE-ECC-CEEEEESSG--GGTTCTHHHHHHHTTS
T ss_pred CEEEEe-CCc-CEEEeeCCC--cchhHHHHHHHHHhhC
Confidence 443332 222 345675432 1233567778887654
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.21 E-value=6.2e-12 Score=100.95 Aligned_cols=46 Identities=22% Similarity=0.397 Sum_probs=39.3
Q ss_pred HHHHHHhcCCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 312 NRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 312 ~~~~~~~~~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
+++.+.+ ++++++||+|||+||||||+|+|+||++.|++.|.++|.
T Consensus 2 ~~~~~~i-~~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~ 47 (136)
T d1mv8a3 2 QKAFDLI-TSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGY 47 (136)
T ss_dssp HHHHHHH-TTSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTC
T ss_pred hHHHHHH-HhcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhc
Confidence 3444443 557899999999999999999999999999999999874
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.17 E-value=1.4e-11 Score=94.65 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=36.9
Q ss_pred HHHHHhcC-CCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 313 RVVASMFN-TVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 313 ~~~~~~~~-~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
++.+.|.. .-..++|+||||||||||+|+|+||++.|++.|.+.|.
T Consensus 3 ~ii~~l~~~~~~~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~ 49 (108)
T d1dlja3 3 QIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDI 49 (108)
T ss_dssp HHHHHHTTSCCSSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSC
T ss_pred HHHHHHHhccCCCCEEEEEEEEECCCCcchhhhhHHHHHHHHhcccc
Confidence 34444422 23446899999999999999999999999999998874
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=99.02 E-value=2.6e-09 Score=86.14 Aligned_cols=116 Identities=22% Similarity=0.331 Sum_probs=74.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|++|.++|..|+.++...+|+++|+++++.+..... +..... ........+.|+++ +++||+
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~D--------l~~a~~-~~~~~~~~~~d~~~-~~~adi 75 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALD--------LEDAQA-FTAPKKIYSGEYSD-CKDADL 75 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH--------HHGGGG-GSCCCEEEECCGGG-GTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHH--------Hhcccc-ccCCceEeeccHHH-hccccE
Confidence 69999999999999999999983236999999999876643321 111000 11234566788876 899999
Q ss_pred EEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d-----~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|+++...|..... + ..| .+.+++..+.|.++. ++.++++ .|.|...
T Consensus 76 vvitag~~~~~g~---~-r~~l~~~N~~i~~~~~~~i~~~~-p~aiviv-vtNPvdv 126 (146)
T d1ez4a1 76 VVITAGAPQKPGE---S-RLDLVNKNLNILSSIVKPVVDSG-FDGIFLV-AANPVDI 126 (146)
T ss_dssp EEECCCC--------------CHHHHHHHHHHHHHHHHHTT-CCSEEEE-CSSSHHH
T ss_pred EEEecccccCCCC---C-HHHHHHHHHHHHHHHHHHHhhcC-CCcEEEE-eCCccHH
Confidence 9999987765421 1 222 345667777777765 5566655 3456654
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.84 E-value=1e-08 Score=82.23 Aligned_cols=120 Identities=22% Similarity=0.256 Sum_probs=76.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|.+|.++|..++..+...++.++|+++++.+..... +...... ....++..+++++ ++++||
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d--------~~~~~~~~~~~~~i~~~~~~~-~~~dad 71 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALD--------MYESGPVGLFDTKVTGSNDYA-DTANSD 71 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHH--------HHTTHHHHTCCCEEEEESCGG-GGTTCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhh--------hhcccchhcccceEEecCCHH-HhcCCe
Confidence 89999999999999999999883336999999998776543210 0000000 1123456667765 499999
Q ss_pred EEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH
Q 017997 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~ 135 (362)
+|+++...|... |. ++ ..+...+++..+.|.++. |+.++++ -|.|..+.-
T Consensus 72 vvvitag~~~~~-g~--~r~~l~~~N~~i~~~i~~~i~~~~-p~aiviv-vtNPvd~~~ 125 (142)
T d1guza1 72 IVIITAGLPRKP-GM--TREDLLMKNAGIVKEVTDNIMKHS-KNPIIIV-VSNPLDIMT 125 (142)
T ss_dssp EEEECCSCCCCT-TC--CHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEE-CCSSHHHHH
T ss_pred EEEEEEecCCCC-CC--chHHHHHHHHHHHHHHHHHhhccC-CCeEEEE-ecCChHHHH
Confidence 999998766543 10 11 111233456667777775 5566654 456766543
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.84 E-value=3.1e-08 Score=79.88 Aligned_cols=118 Identities=17% Similarity=0.241 Sum_probs=75.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.||+|||+|.||.++|..|+.++...++.++|+++++.+..... +..............+.|+++ +++||+
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D--------l~~~~~~~~~~~~~~~~d~~~-l~daDv 77 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMD--------FNHGKVFAPKPVDIWHGDYDD-CRDADL 77 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH--------HHHHTTSSSSCCEEEECCGGG-TTTCSE
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhcc--------HhhCccccCCCeEEEECCHHH-hcccee
Confidence 38999999999999999999883234899999999886543220 111000001122334567654 999999
Q ss_pred EEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 82 VFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d-----~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
|+++...|.... .+ ..| ...+++..+.|.++.+ +.++++ -|.|....
T Consensus 78 vvitag~~~~~~---~~-R~dl~~~N~~i~~~i~~~i~~~~p-~a~~iv-vtNPvd~~ 129 (148)
T d1ldna1 78 VVICAGANQKPG---ET-RLDLVDKNIAIFRSIVESVMASGF-QGLFLV-ATNPVDIL 129 (148)
T ss_dssp EEECCSCCCCTT---TC-SGGGHHHHHHHHHHHHHHHHHHTC-CSEEEE-CSSSHHHH
T ss_pred EEEecccccccC---cc-hhHHHHHHHHHHHHHHHHHHhhCC-CceEEE-ecCccHHH
Confidence 999988775431 11 223 3555667778887764 455544 35666643
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.83 E-value=5.5e-08 Score=77.64 Aligned_cols=118 Identities=24% Similarity=0.339 Sum_probs=74.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.+|.++|..++.++...++.++|+++++++..... +..... ........+.+++ ++++||+
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~D--------l~~~~~-~~~~~~~~~~~~~-~~~~adi 70 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALD--------LIHGTP-FTRRANIYAGDYA-DLKGSDV 70 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH--------HHHHGG-GSCCCEEEECCGG-GGTTCSE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcc--------cccccc-ccccccccCCcHH-HhcCCCE
Confidence 89999999999999999998873345899999999887643211 111000 1112223455665 4999999
Q ss_pred EEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
|+++...|... |. ++ ..+...+++..+.|.++. |+.++++ -|.|....
T Consensus 71 vvitag~~~~~-g~--~r~dl~~~N~~I~~~i~~~i~~~~-p~aiviv-vtNPvd~~ 122 (140)
T d1a5za1 71 VIVAAGVPQKP-GE--TRLQLLGRNARVMKEIARNVSKYA-PDSIVIV-VTNPVDVL 122 (140)
T ss_dssp EEECCCCCCCS-SC--CHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE-CSSSHHHH
T ss_pred EEEecccccCC-Cc--chhhhhccccchHHHHHHHHHhcC-CCcEEEE-eCCcHHHH
Confidence 99998876543 10 11 112233566667777775 4556554 46676653
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.81 E-value=1.3e-08 Score=81.62 Aligned_cols=119 Identities=18% Similarity=0.268 Sum_probs=75.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHh-hhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~-~~~~~~l~~t~d~~~a~~~a 79 (362)
+||+|||+|++|.++|..|+.+ +. ++.++|+++++.+..... +..... .....+++.+.|+++ ++++
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~--~l~dl~l~D~~~~~~~~~~~D--------l~~~~~~~~~~~~i~~~~d~~~-~~~a 70 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAK--ELGDIVLLDIVEGVPQGKALD--------LYEASPIEGFDVRVTGTNNYAD-TANS 70 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCSEEEEECSSSSHHHHHHHH--------HHTTHHHHTCCCCEEEESCGGG-GTTC
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CcceEEEEeeccccchhHHHH--------hhccccccCCCCEEEecCcHHH-hcCC
Confidence 5999999999999999999987 44 899999998776543321 000000 001234677888886 8999
Q ss_pred cEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHH
Q 017997 80 DIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~ 136 (362)
|+|+++.+.|..... ++ ..+.+.+++..+.|.++. ++.++++ .|.|....-.
T Consensus 71 dvvvitag~~~~~~~---~r~dl~~~N~~i~~~i~~~i~k~~-p~aiviv-vtNPvDv~t~ 126 (142)
T d1uxja1 71 DVIVVTSGAPRKPGM---SREDLIKVNADITRACISQAAPLS-PNAVIIM-VNNPLDAMTY 126 (142)
T ss_dssp SEEEECCSCC------------CHHHHHHHHHHHHHHHGGGC-TTCEEEE-CSSSHHHHHH
T ss_pred CEEEEeeeccCCcCc---chhHHHhHHHHHHHHHHHHHhccC-CCceEEE-eCCchHHHHH
Confidence 999999987764321 11 112345566667777764 4555544 5677765433
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.80 E-value=4.9e-08 Score=78.42 Aligned_cols=121 Identities=15% Similarity=0.179 Sum_probs=74.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+||+|||+|++|.++|..|+.++...++.++|+++++.+.... ++.+............+.|+++ +++||+
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~--------Dl~~a~~~~~~~~~~~~~d~~~-l~~adi 72 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQI--------DFQDAMANLEAHGNIVINDWAA-LADADV 72 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHH--------HHHHHGGGSSSCCEEEESCGGG-GTTCSE
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHH--------hhhccccccCCccceeccCHHH-hccccE
Confidence 6999999999999999999987323589999999988764321 1111111111122345677765 999999
Q ss_pred EEEeccCCCCCC-CCCCCCCCC-----hHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 82 VFVSVNTPTKTQ-GLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 82 Vii~vptp~~~~-g~~~~~~~d-----~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
|+++.+.|.... ..+.+ ..| ...+++..+.+.++. ++.++++ -|.|....
T Consensus 73 VVitaG~~~~~~~~~g~~-R~~l~~~N~~i~~~i~~~i~~~~-p~aiviv-vtNPvD~~ 128 (146)
T d1hyha1 73 VISTLGNIKLQQDNPTGD-RFAELKFTSSMVQSVGTNLKESG-FHGVLVV-ISNPVDVI 128 (146)
T ss_dssp EEECCSCGGGTC--------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEE-CSSSHHHH
T ss_pred EEEeccccccccccCCcc-HHHHHHHHHHHHHHHHHHHhhcC-CCeEEEE-ecCcHHHH
Confidence 999987654211 00011 222 345666667777665 5566544 35666543
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.75 E-value=4.9e-08 Score=78.15 Aligned_cols=119 Identities=24% Similarity=0.279 Sum_probs=75.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.||+|||+|.+|.++|..++.++...++.++|+++++.+..... +...........+..++++++ +++||+
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~D--------l~~a~~~~~~~~i~~~~~~~~-~~daDv 72 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLD--------MQHGSSFYPTVSIDGSDDPEI-CRDADM 72 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH--------HHHTGGGSTTCEEEEESCGGG-GTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHH--------HHhccccCCCceeecCCCHHH-hhCCcE
Confidence 59999999999999999999883344899999999886642210 000000011234566777765 999999
Q ss_pred EEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
|+++...|... + .++ ..+.+.+++..+.|.++. ++.++++ -|.|....
T Consensus 73 VVitaG~~~~~-g--~~R~dl~~~N~~i~~~i~~~i~~~~-p~ai~iv-vtNPvDvm 124 (143)
T d1llda1 73 VVITAGPRQKP-G--QSRLELVGATVNILKAIMPNLVKVA-PNAIYML-ITNPVDIA 124 (143)
T ss_dssp EEECCCCCCCT-T--CCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEE-CCSSHHHH
T ss_pred EEEecccccCC-C--CchhhhhhhhHHHHHHHHHHHHhhC-CCeEEEE-eCCchHHH
Confidence 99998876543 1 111 112345566667777765 4555544 34566543
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.74 E-value=1.7e-08 Score=79.96 Aligned_cols=93 Identities=19% Similarity=0.189 Sum_probs=77.3
Q ss_pred ChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCC-------CC--ccCCCCCcccChhHhHH
Q 017997 208 NLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGP-------KF--LNASVGFGGSCFQKDIL 278 (362)
Q Consensus 208 ~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~~~i~~-------~~--~~~g~g~gg~cl~kD~~ 278 (362)
|++++..+|+++|.+.++++..+.|...++++.|+|+++++++++..+--++ ++ -++.|+|....+.||+.
T Consensus 1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~f~~~l~~KDl~ 80 (133)
T d1vpda1 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLA 80 (133)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhccchhhhccCCCCchHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999987652111 01 12456888899999999
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHH
Q 017997 279 NLVYICECNGLPEVAEYWKQVIKI 302 (362)
Q Consensus 279 ~l~~~a~~~g~~~~~~~~~~~~~~ 302 (362)
+..+.|++.|+| .|+.+.+.+.
T Consensus 81 l~~~~a~~~~~~--~p~~~~~~~~ 102 (133)
T d1vpda1 81 NALDTSHGVGAQ--LPLTAAVMEM 102 (133)
T ss_dssp HHHHHHHHHTCC--CHHHHHHHHH
T ss_pred HHHHHHHHcCCC--ChHHHHHHHH
Confidence 999999999999 7777765543
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.74 E-value=3.4e-08 Score=79.06 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=72.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|.+|.++|..++.++.-.++.++|+++++.+.... ++....... ...++..++|++ +++++|
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~al--------Dl~~~~~~~~~~~~i~~~~d~~-~~~~ad 71 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAM--------DLAHAAAGIDKYPKIVGGADYS-LLKGSE 71 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHH--------HHHHHHHTTTCCCEEEEESCGG-GGTTCS
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHH--------HHhhhccccCCCCccccCCCHH-Hhcccc
Confidence 8999999999999999999987222479999999988654221 011111100 123466778886 499999
Q ss_pred EEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
+|+++...|... |. ++ .-+...+++..+.+.++. ++.++++ -|.|...
T Consensus 72 iVvitag~~~~~-g~--~r~~l~~~n~~i~~~i~~~i~~~~-p~aiviv-vtNPvD~ 123 (142)
T d1ojua1 72 IIVVTAGLARKP-GM--TRLDLAHKNAGIIKDIAKKIVENA-PESKILV-VTNPMDV 123 (142)
T ss_dssp EEEECCCCCCCS-SC--CHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEE-CSSSHHH
T ss_pred EEEEeccccCCC-CC--chHHHHHHhhHHHHHHHHHHHhhC-CCcEEEE-ecCChHH
Confidence 999998776543 10 11 011123344445555554 5566654 3456554
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.70 E-value=1.2e-07 Score=76.87 Aligned_cols=121 Identities=18% Similarity=0.217 Sum_probs=76.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~a 79 (362)
+||+|||+|++|.++|..++.. ++ +++++|+++++++..... +....... ....+..+++.++++++|
T Consensus 8 ~KI~IIGaG~VG~~lA~~l~~~--~~~el~L~D~~~~~~~g~a~D--------l~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (154)
T d1pzga1 8 KKVAMIGSGMIGGTMGYLCALR--ELADVVLYDVVKGMPEGKALD--------LSHVTSVVDTNVSVRAEYSYEAALTGA 77 (154)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSHHHHHHHH--------HHHHHHHTTCCCCEEEECSHHHHHTTC
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCceEEEEEeccccchhHHHH--------HhhhccccCCeeEEeccCchhhhhcCC
Confidence 5999999999999999988887 54 899999998776654321 11111111 123466778888889999
Q ss_pred cEEEEeccCCCCCCCCCC-CCCCC-----hHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 80 DIVFVSVNTPTKTQGLGA-GKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~-~~~~d-----~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
|+|+++...|........ ....| ...+++..+.+.++.+ +.++++ .|.|....
T Consensus 78 diVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p-~aivii-vsNPvd~l 136 (154)
T d1pzga1 78 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP-KTFIIV-VTNPLDCM 136 (154)
T ss_dssp SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEE-CCSSHHHH
T ss_pred CeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCC-CcEEEE-eCCcHHHH
Confidence 999999876643210000 01122 2346666777777654 555544 45666543
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.65 E-value=2.1e-07 Score=75.61 Aligned_cols=118 Identities=21% Similarity=0.255 Sum_probs=73.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.||+|||+|.+|.++|..++..+.--++.++|+++++.+..... +..............+.|+++ +++||+
T Consensus 21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alD--------l~h~~~~~~~~~~~~~~d~~~-~~~adi 91 (160)
T d1i0za1 21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMD--------LQHGSLFLQTPKIVADKDYSV-TANSKI 91 (160)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHH--------HHHTGGGCCCSEEEECSSGGG-GTTCSE
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHH--------HhccccccCCCeEEeccchhh-cccccE
Confidence 49999999999999999999982223899999998877543210 000000001223445567765 999999
Q ss_pred EEEeccCCCCCCCCCCCCCC----ChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAA----DLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~----d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|+++...|... | .++.. +...+++..++|.++. ++.++++ -|.|...
T Consensus 92 VVitAg~~~~~-g--~tR~~l~~~N~~i~~~i~~~i~~~~-p~aiiiv-vtNPvDv 142 (160)
T d1i0za1 92 VVVTAGVRQQE-G--ESRLNLVQRNVNVFKFIIPQIVKYS-PDCIIIV-VSNPVDI 142 (160)
T ss_dssp EEECCSCCCCT-T--CCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEE-CSSSHHH
T ss_pred EEEecCCcccc-C--cchHHHHHHHHHHHHHHHHHHHhcC-CCcEEEE-eCCchHH
Confidence 99998876544 2 12211 2234556667777764 4555544 2455544
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.62 E-value=1.2e-07 Score=74.96 Aligned_cols=90 Identities=17% Similarity=0.082 Sum_probs=74.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCC-------C-------CCC--ccCCCCCcccCh
Q 017997 210 WSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRI-------G-------PKF--LNASVGFGGSCF 273 (362)
Q Consensus 210 ~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~~~i-------~-------~~~--~~~g~g~gg~cl 273 (362)
+++..+|+++|.+.+.++..+.|...++++.|+|++.++++++..+-- + ... .++.+||....+
T Consensus 3 GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~ 82 (134)
T d3cuma1 3 GAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQLM 82 (134)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchHHH
Confidence 578899999999999999999999999999999999999999865410 0 011 134567888899
Q ss_pred hHhHHHHHHHHHhCCCchhHHHHHHHHH
Q 017997 274 QKDILNLVYICECNGLPEVAEYWKQVIK 301 (362)
Q Consensus 274 ~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (362)
.||+.+..+.+++.|++ .++.+.+++
T Consensus 83 ~KDl~l~~~~a~~~g~~--~p~~~~a~~ 108 (134)
T d3cuma1 83 AKDLGLAQEAAQASASS--TPMGSLALS 108 (134)
T ss_dssp HHHHHHHHHHHHHHTCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence 99999999999999999 787776554
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.59 E-value=2e-07 Score=75.78 Aligned_cols=115 Identities=18% Similarity=0.262 Sum_probs=71.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH----HcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW----NSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l----~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
+||+|||+|.+|.++|..|+..+...++.++|+++++.+.. +...... .......+.|+++ ++
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~------------~~~~~~~~~d~~~-~~ 86 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFL------------STPKIVFGKDYNV-SA 86 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTC------------SCCEEEEESSGGG-GT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhc------------CCCeEEeccchhh-hc
Confidence 48999999999999999999883334899999998876532 2211110 1123455677765 89
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCC----ChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAA----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~----d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
+||+|+++...|.... .++.- +.+.+++..+.|.++ .++.++++- |.|....
T Consensus 87 ~adivvitag~~~~~~---~~R~dll~~N~~i~~~i~~~i~~~-~p~~ivivv-tNPvDv~ 142 (159)
T d2ldxa1 87 NSKLVIITAGARMVSG---QTRLDLLQRNVAIMKAIVPGVIQN-SPDCKIIVV-TNPVDIL 142 (159)
T ss_dssp TEEEEEECCSCCCCTT---TCSSCTTHHHHHHHHHHTTTHHHH-STTCEEEEC-SSSHHHH
T ss_pred cccEEEEecccccCCC---CCHHHHHHHHHHHHHHHHHHHhcc-CCCeEEEEe-CCcHHHH
Confidence 9999999988776542 12211 123334444444454 355665543 4465543
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.57 E-value=9.7e-08 Score=75.38 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=74.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCC-------CC-C--ccCCCCCcccChhHhHHH
Q 017997 210 WSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIG-------PK-F--LNASVGFGGSCFQKDILN 279 (362)
Q Consensus 210 ~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~~~i~-------~~-~--~~~g~g~gg~cl~kD~~~ 279 (362)
+.+..+|+++|.+.+.++..+.|...++++.|+|++++++++...+--+ +. . -+..++|.-..+.||+.+
T Consensus 2 G~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~p~~~~~~~~~~~f~~~~~~KDl~l 81 (132)
T d2cvza1 2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLGI 81 (132)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHhhHHHH
Confidence 5788999999999999999999999999999999999999998654111 00 0 123457888899999999
Q ss_pred HHHHHHhCCCchhHHHHHHHHHH
Q 017997 280 LVYICECNGLPEVAEYWKQVIKI 302 (362)
Q Consensus 280 l~~~a~~~g~~~~~~~~~~~~~~ 302 (362)
..+.|++.|+| .++.+.+.+.
T Consensus 82 ~~~~a~~~g~~--~pl~~~~~~~ 102 (132)
T d2cvza1 82 AMGVLDGEKAP--SPLLRLAREV 102 (132)
T ss_dssp HHHHHTTTCCC--CHHHHHHHHH
T ss_pred HHHHHHHcCCC--ChHHHHHHHH
Confidence 99999999999 7777765543
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.55 E-value=2.9e-07 Score=73.68 Aligned_cols=118 Identities=22% Similarity=0.363 Sum_probs=70.0
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHH--HHHHHHcCCCCCCCCChHHHHhhh-cCCCEE--EecCHHhh
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVS--RINAWNSDQLPIYEPGLDGVVKQC-RGKNLF--FSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~--~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~--~t~d~~~a 75 (362)
|||+|||+ |.+|.++|..++..+.-.++.++|++++ +.+..... +.+..... ...+++ .+.+++ +
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~D--------l~~~~~~~~~~~~~~~~~~~d~~-~ 71 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLRED--------IYDALAGTRSDANIYVESDENLR-I 71 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHH--------HHHHHTTSCCCCEEEEEETTCGG-G
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhccccc--------chhcccccccCCccccCCcchHH-H
Confidence 89999995 9999999999998821249999999853 33322110 11110000 011232 234555 5
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
+++||+|+++...|.... .+| ..+.+.+++..+.|.++. ++.++++ |.|....
T Consensus 72 l~~aDvVVitAG~~~~~g---~sR~dl~~~Na~iv~~i~~~i~~~~-~~~iivV--tNPvD~m 128 (145)
T d1hyea1 72 IDESDVVIITSGVPRKEG---MSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVI--TNPVDVM 128 (145)
T ss_dssp GTTCSEEEECCSCCCCTT---CCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEC--SSSHHHH
T ss_pred hccceEEEEecccccCCC---CChhhhhhhhHHHHHHHHHHHhccC-CCeEEEE--cCchHHH
Confidence 999999999987765431 111 112234566677777775 4555543 6777643
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.55 E-value=1.6e-07 Score=77.44 Aligned_cols=79 Identities=20% Similarity=0.183 Sum_probs=54.7
Q ss_pred ceEEEEcCChhHHHHHH--HHHHc--CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGGPTMA--VIALK--CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~--~la~~--~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~ 76 (362)
|||+|||+|.+|.+.+. .++.. .++.+++++|+|+++++..... +...... ...-++..++|..+++
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~--------~~~~~~~~~~~~~i~~~td~~eaL 74 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTI--------AKKYVEEVGADLKFEKTMNLDDVI 74 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHH--------HHHHHHHTTCCCEEEEESCHHHHH
T ss_pred cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHH--------HHHHHHhcCCCeEEEEeCChhhcc
Confidence 89999999999987543 24322 1246999999999988754321 1111111 1234577889999999
Q ss_pred cCCcEEEEeccC
Q 017997 77 SEADIVFVSVNT 88 (362)
Q Consensus 77 ~~aDvVii~vpt 88 (362)
++||+|++++..
T Consensus 75 ~dad~Vv~~~~~ 86 (171)
T d1obba1 75 IDADFVINTAMV 86 (171)
T ss_dssp TTCSEEEECCCT
T ss_pred cCCCeEeeeccc
Confidence 999999998754
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.48 E-value=1.5e-07 Score=78.30 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=72.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.+|..+|..+..- |.+|++||+++. ++ .....+++++.+++||+
T Consensus 43 k~vgIiG~G~IG~~va~~l~~~--g~~v~~~d~~~~------~~-------------------~~~~~~~l~ell~~sDi 95 (181)
T d1qp8a1 43 EKVAVLGLGEIGTRVGKILAAL--GAQVRGFSRTPK------EG-------------------PWRFTNSLEEALREARA 95 (181)
T ss_dssp CEEEEESCSTHHHHHHHHHHHT--TCEEEEECSSCC------CS-------------------SSCCBSCSHHHHTTCSE
T ss_pred ceEEEeccccccccceeeeecc--cccccccccccc------cc-------------------ceeeeechhhhhhccch
Confidence 4799999999999999999887 999999998632 11 11234567888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|-..... .-.| +...+.++++.++|+.|--+.=..+.+.+.+++.
T Consensus 96 v~~~~pl~~~t~-----~li~--------~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~ 145 (181)
T d1qp8a1 96 AVCALPLNKHTR-----GLVK--------YQHLALMAEDAVFVNVGRAEVLDRDGVLRILKER 145 (181)
T ss_dssp EEECCCCSTTTT-----TCBC--------HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred hhcccccccccc-----cccc--------cceeeeccccceEEeccccccccchhhhhhcccC
Confidence 999987432211 1122 3556778999999987743333345666777664
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.48 E-value=5.3e-07 Score=72.02 Aligned_cols=127 Identities=17% Similarity=0.260 Sum_probs=76.4
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.||+|||+ |.+|.++|..|+..+---++.++|+++.+.+.+--.+..... ........++..+++++||
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~----------~~~~~~~~~~~~~~~~~aD 70 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA----------TVKGYLGPEQLPDCLKGCD 70 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSC----------EEEEEESGGGHHHHHTTCS
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhc----------CCCeEEcCCChHHHhCCCC
Confidence 38999995 999999999999872223799999987765543211110000 0011222345566799999
Q ss_pred EEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHH-HHHHHh
Q 017997 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI-EKILTH 143 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l-~~~l~~ 143 (362)
+|+++...|... |+ +| ..+.+.+++..+.+.++. ++.++++ .|.|..+.-.+ .+.+.+
T Consensus 71 ivVitag~~~~~-g~--sR~~ll~~N~~i~~~i~~~i~~~~-p~~iiiv-vtNPvD~~t~~~~~~~kk 133 (144)
T d1mlda1 71 VVVIPAGVPRKP-GM--TRDDLFNTNATIVATLTAACAQHC-PDAMICI-ISNPVNSTIPITAEVFKK 133 (144)
T ss_dssp EEEECCSCCCCT-TC--CGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEE-CSSCHHHHHHHHHHHHHH
T ss_pred EEEECCCcCCCC-CC--CcchHHHHHHHHHHHHHHHHHhcC-CCeEEEE-ecCchhhhHHHHHHHHHH
Confidence 999998876543 21 11 122355667777777774 5555544 45666654333 344444
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.47 E-value=9.6e-07 Score=70.97 Aligned_cols=121 Identities=18% Similarity=0.172 Sum_probs=74.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (362)
+||+|||+|.+|.++|..++..+. .++.++|+++++.+..... +...... .....+..+.++++ ++++|
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~D--------l~~~~~~~~~~~~v~~~~~~~~-~~~ad 73 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALD--------TSHTNVMAYSNCKVSGSNTYDD-LAGAD 73 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHH--------HHTHHHHHTCCCCEEEECCGGG-GTTCS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecc--------hhhhccccCCCcEEEecccccc-cCCCc
Confidence 599999999999999988887732 3899999998776654321 1111000 01233555666655 99999
Q ss_pred EEEEeccCCCCCCCCC-CCCCCC-----hHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 81 IVFVSVNTPTKTQGLG-AGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 81 vVii~vptp~~~~g~~-~~~~~d-----~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
+|+++...|....-.. .....| ...+++..+.|.++. ++.++++ -|.|....
T Consensus 74 vvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~-p~aiviv-vtNPvD~~ 131 (150)
T d1t2da1 74 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIV-VTNPVDVM 131 (150)
T ss_dssp EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEE-CSSSHHHH
T ss_pred EEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcC-CCeEEEE-ecCchHHH
Confidence 9999988664331000 001222 235666667777775 5666654 45676653
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.45 E-value=3.5e-07 Score=72.94 Aligned_cols=113 Identities=20% Similarity=0.379 Sum_probs=65.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH----HHcCCCCCCCCChHHHHhhhcCCCEE-EecCHHhhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINA----WNSDQLPIYEPGLDGVVKQCRGKNLF-FSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~----l~~~~~~~~e~~l~~~~~~~~~~~l~-~t~d~~~a~ 76 (362)
.||+|||+|.+|.++|..++.++...++.++|+++++.+. |+.. .++ ..... .+.+++ ++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~-~~~-------------~~~~~~~~~~~~-~~ 66 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHG-LPF-------------MGQMSLYAGDYS-DV 66 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTS-CCC-------------TTCEEEC--CGG-GG
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccC-ccc-------------CCCeeEeeCcHH-Hh
Confidence 4899999999999999999988333489999999876432 2211 111 11222 334565 49
Q ss_pred cCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
++||+|+++...+... + .++ ..+...+++..+.+.++. |+.++++ -|.|....
T Consensus 67 ~~adivvitag~~~~~-~--~~r~~l~~~N~~i~~~i~~~i~~~~-p~ai~iv-vtNPvdv~ 123 (142)
T d1y6ja1 67 KDCDVIVVTAGANRKP-G--ETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILV-VSNPVDII 123 (142)
T ss_dssp TTCSEEEECCCC---------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEE-CSSSHHHH
T ss_pred CCCceEEEecccccCc-C--cchhHHhhHHHHHHHHHHHHhhccC-CCceEEE-ecChHHHH
Confidence 9999999997766433 1 011 111244556666676665 4555544 35676654
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.40 E-value=6e-07 Score=75.36 Aligned_cols=108 Identities=13% Similarity=0.097 Sum_probs=74.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.+|..+|..+..- |.+|++||+....-..-. ......+++++.++.||+
T Consensus 50 ktvgIiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~~~~~~--------------------~~~~~~~~l~~ll~~sD~ 107 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAKAF--GFNVLFYDPYLSDGVERA--------------------LGLQRVSTLQDLLFHSDC 107 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECTTSCTTHHHH--------------------HTCEECSSHHHHHHHCSE
T ss_pred ceEEEeccccccccceeeeecc--ccceeeccCcccccchhh--------------------hccccccchhhccccCCE
Confidence 4799999999999999998776 999999998532211100 124556788888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|-.....+ -.+ +.....++++.++|+.|--..=..+.+.+.+++.
T Consensus 108 i~~~~plt~~T~~-----li~--------~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~ 157 (193)
T d1mx3a1 108 VTLHCGLNEHNHH-----LIN--------DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEG 157 (193)
T ss_dssp EEECCCCCTTCTT-----SBS--------HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred EEEeecccccchh-----hhh--------HHHHhccCCCCeEEecCCceEEcHHHHHHHHHcC
Confidence 9999884322211 222 2345668999999997754333455677777653
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.39 E-value=6.5e-07 Score=73.30 Aligned_cols=69 Identities=22% Similarity=0.289 Sum_probs=49.5
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc-CC
Q 017997 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-EA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-~a 79 (362)
|||+|||+|.+|.. ....+.+. ++.+++++|+++++.+.+.+.. +.....+|+++.++ +.
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~-~~~~~~~~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~ll~~~i 63 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQW-PDIELVLCTRNPKVLGTLATRY-----------------RVSATCTDYRDVLQYGV 63 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-TTEEEEEECSCHHHHHHHHHHT-----------------TCCCCCSSTTGGGGGCC
T ss_pred eEEEEEcCCHHHHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHhc-----------------ccccccccHHHhccccc
Confidence 79999999999976 44455544 4778899999999998876521 11123456666553 67
Q ss_pred cEEEEeccC
Q 017997 80 DIVFVSVNT 88 (362)
Q Consensus 80 DvVii~vpt 88 (362)
|+|++|+|+
T Consensus 64 D~V~I~tp~ 72 (167)
T d1xeaa1 64 DAVMIHAAT 72 (167)
T ss_dssp SEEEECSCG
T ss_pred ceecccccc
Confidence 999999774
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.39 E-value=1.5e-07 Score=78.31 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=38.8
Q ss_pred ceEEEE-cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCI-GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VI-GlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|||+|+ |+|.||..+|..|+++ ||+|++|+|++++++.+.+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~--G~~V~l~~R~~e~~~~l~~ 42 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATL--GHEIVVGSRREEKAEAKAA 42 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT--TCEEEEEESSHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 899999 8999999999999999 9999999999999988765
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=8.6e-07 Score=70.82 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=72.7
Q ss_pred ceEEEEc-CChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHH----HHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 2 VKICCIG-AGYVGGPTMAVIALK-CPSIEVAVVDISVSRINA----WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~-~~G~~V~~~d~~~~~~~~----l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
|||+||| .|.+|.++|..|+.+ +...++.++|+++ ..+. ++....+. ....+..+++++ +
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~------------~~~~~~~~~~~~-~ 66 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAV------------KIKGFSGEDATP-A 66 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSC------------EEEEECSSCCHH-H
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCcccc------------CCcEEEcCCCcc-c
Confidence 8999999 599999999888643 2357999999875 3322 22211000 001112234555 5
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHH-HHHHHh
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI-EKILTH 143 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d-----~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l-~~~l~~ 143 (362)
++++|+||++-..|..+ ++ + ..| ...+++..++|.++.+ +.+|++ -|.|..+.-.+ .+.+..
T Consensus 67 ~~~aDvvvitaG~~~k~-g~--~-R~dl~~~N~~i~~~v~~~i~~~~p-~aiviv-vtNPvD~m~~~~~~v~~~ 134 (145)
T d2cmda1 67 LEGADVVLISAGVRRKP-GM--D-RSDLFNVNAGIVKNLVQQVAKTCP-KACIGI-ITNPVNTTVAIAAEVLKK 134 (145)
T ss_dssp HTTCSEEEECCSCCCCT-TC--C-GGGGHHHHHHHHHHHHHHHHHHCT-TSEEEE-CSSSHHHHHHHHHHHHHH
T ss_pred cCCCCEEEECCCccCCC-Cc--c-hhhHHHHHHHHHHHHHHHHHhhCC-CcEEEE-ccCCchHHHHHHHHHHHH
Confidence 99999999998876543 21 1 223 3456677778888764 455443 35666654433 344433
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.36 E-value=1.2e-07 Score=78.01 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=53.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.||.|||+|.||.++|..|+++ ||+|+++||+.++++.+.+......... ..........+.+...|+
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~--g~~V~v~dr~~~~a~~l~~~~~~~~~~~----------~~~~~~~~~~~~i~~~~~ 70 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDS--GIKVTVACRTLESAKKLSAGVQHSTPIS----------LDVNDDAALDAEVAKHDL 70 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT--TCEEEEEESCHHHHHHHHTTCTTEEEEE----------CCTTCHHHHHHHHTTSSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEECChHHHHHHHhccccccccc----------ccccchhhhHhhhhccce
Confidence 5899999999999999999999 9999999999999999987432110000 000001123345778899
Q ss_pred EEEecc
Q 017997 82 VFVSVN 87 (362)
Q Consensus 82 Vii~vp 87 (362)
++.++|
T Consensus 71 ~i~~~~ 76 (182)
T d1e5qa1 71 VISLIP 76 (182)
T ss_dssp EEECSC
T ss_pred eEeecc
Confidence 998865
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.35 E-value=2e-06 Score=67.50 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=39.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|||.|+|+|.+|..+|..|.+. |++|+++|.|+++++.+.+
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~--g~~v~vid~d~~~~~~~~~ 41 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASA 41 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCCcceecCChhhhhhhhh
Confidence 8999999999999999999999 9999999999999998865
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.33 E-value=7.7e-07 Score=72.61 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=49.7
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|.||.. ....+... ++.+++ ++|+++++.+.+.+. -++.+.++.++.+++.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~-~~~~i~~v~d~~~~~~~~~~~~------------------~~~~~~~~~~~l~~~~ 62 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAA-SDWTLQGAWSPTRAKALPICES------------------WRIPYADSLSSLAASC 62 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-SSEEEEEEECSSCTTHHHHHHH------------------HTCCBCSSHHHHHTTC
T ss_pred CEEEEEcCCHHHHHHHHHHHHhC-CCcEEEEEEechhHhhhhhhhc------------------ccccccccchhhhhhc
Confidence 69999999999986 44555543 477765 569998887776541 0133456777777899
Q ss_pred cEEEEeccCC
Q 017997 80 DIVFVSVNTP 89 (362)
Q Consensus 80 DvVii~vptp 89 (362)
|+|++|+|+.
T Consensus 63 D~V~I~tp~~ 72 (164)
T d1tlta1 63 DAVFVHSSTA 72 (164)
T ss_dssp SEEEECSCTT
T ss_pred ccccccccch
Confidence 9999998743
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.32 E-value=1.5e-06 Score=72.53 Aligned_cols=109 Identities=14% Similarity=0.152 Sum_probs=75.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.+|..+|..+..- |.+|.+||+....-..... ..+....++++.+++||+
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~~~~~~~-------------------~~~~~~~~l~~~l~~sD~ 103 (188)
T d2naca1 45 MHVGTVAAGRIGLAVLRRLAPF--DVHLHYTDRHRLPESVEKE-------------------LNLTWHATREDMYPVCDV 103 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHGGG--TCEEEEECSSCCCHHHHHH-------------------HTCEECSSHHHHGGGCSE
T ss_pred cceeeccccccchhhhhhhhcc--CceEEEEeecccccccccc-------------------ccccccCCHHHHHHhccc
Confidence 4899999999999999999877 8999999985322211111 124456778888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|......+ -.+ ++..+.++++.++|+.|--..=..+.+.+.|++.
T Consensus 104 v~~~~plt~~T~~-----li~--------~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g 153 (188)
T d2naca1 104 VTLNCPLHPETEH-----MIN--------DETLKLFKRGAYIVNTARGKLCDRDAVARALESG 153 (188)
T ss_dssp EEECSCCCTTTTT-----CBS--------HHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred hhhcccccccchh-----hhH--------HHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCC
Confidence 9999885432211 222 3455678999999987653333345677777664
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.31 E-value=1.8e-06 Score=67.73 Aligned_cols=73 Identities=22% Similarity=0.289 Sum_probs=52.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh-hcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH-VSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~aD 80 (362)
+++.|+|+|.+|..+|..|.+. |++|+++|.|+++++.+.+...+..- +..+-...+.++ +.++|
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~--g~~vvvid~d~~~~~~~~~~~~~~~~------------gd~~~~~~l~~a~i~~a~ 66 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINEEKVNAYASYATHAVI------------ANATEENELLSLGIRNFE 66 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCCEEEESCHHHHHHTTTTCSEEEE------------CCTTCTTHHHHHTGGGCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEecCcHHHHHHHHHhCCccee------------eecccchhhhccCCcccc
Confidence 4789999999999999999999 99999999999999998764321110 000000112222 67999
Q ss_pred EEEEeccC
Q 017997 81 IVFVSVNT 88 (362)
Q Consensus 81 vVii~vpt 88 (362)
.+|++++.
T Consensus 67 ~vi~~~~~ 74 (134)
T d2hmva1 67 YVIVAIGA 74 (134)
T ss_dssp EEEECCCS
T ss_pred EEEEEcCc
Confidence 99999764
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.29 E-value=4.2e-06 Score=69.38 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=53.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh--cC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV--SE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~--~~ 78 (362)
+||||||+|.||...+..+... ++++|+ ++|+++++.+.+.+... .....++.+|+++.+ .+
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~-~~~~i~ai~d~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ll~~~~ 66 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLA-PNATISGVASRSLEKAKAFATANN--------------YPESTKIHGSYESLLEDPE 66 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHHTT--------------CCTTCEEESSHHHHHHCTT
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-CCCEEEEEEeCCccccccchhccc--------------cccceeecCcHHHhhhccc
Confidence 6999999999999999888765 467877 46999998877654210 012345678888866 46
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
.|+|++|+|+
T Consensus 67 iD~v~I~tp~ 76 (184)
T d1ydwa1 67 IDALYVPLPT 76 (184)
T ss_dssp CCEEEECCCG
T ss_pred cceeeecccc
Confidence 8999999764
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.29 E-value=2e-06 Score=72.24 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=71.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.+|..+|..+..- |.+|++||+....... ..+ . ...++++.+++||+
T Consensus 44 k~vgIiG~G~IG~~va~~l~~f--g~~V~~~d~~~~~~~~-~~~--------------------~-~~~~l~~~l~~sDi 99 (197)
T d1j4aa1 44 QVVGVVGTGHIGQVFMQIMEGF--GAKVITYDIFRNPELE-KKG--------------------Y-YVDSLDDLYKQADV 99 (197)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCHHHH-HTT--------------------C-BCSCHHHHHHHCSE
T ss_pred CeEEEecccccchhHHHhHhhh--cccccccCcccccccc-cce--------------------e-eecccccccccccc
Confidence 4899999999999999999776 9999999976432221 111 1 12467788999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|-..... +-.+ ++....++++.++|+.|--+.=..+.+.+.+++.
T Consensus 100 i~~~~plt~~T~-----~li~--------~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~ 149 (197)
T d1j4aa1 100 ISLHVPDVPANV-----HMIN--------DESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG 149 (197)
T ss_dssp EEECSCCCGGGT-----TCBS--------HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred ccccCCcccccc-----cccc--------HHHHhhhCCccEEEecCchhhhhhHHHHHHHhcc
Confidence 999988432211 1222 2334567899999986643332345566667653
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=98.27 E-value=1.3e-06 Score=71.47 Aligned_cols=80 Identities=15% Similarity=0.197 Sum_probs=54.1
Q ss_pred ceEEEEcCChhHHHHHH-HHHHcCCC---CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGGPTMA-VIALKCPS---IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~-~la~~~~G---~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (362)
+||+|||+|.+|.+.+. .+....+. -+++++|+|+++++....- ++...... ...++..++|..+++
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~d~~eal 75 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGA--------CDVFIREKAPDIEFAATTDPEEAF 75 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHH--------HHHHHHHHCTTSEEEEESCHHHHH
T ss_pred ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHH--------HHHHHHHhCCCcceEecCChhhcc
Confidence 58999999999987442 33322112 3899999999998743320 11122111 233577889999999
Q ss_pred cCCcEEEEeccCC
Q 017997 77 SEADIVFVSVNTP 89 (362)
Q Consensus 77 ~~aDvVii~vptp 89 (362)
++||+||++...+
T Consensus 76 ~~AD~Vvitag~~ 88 (167)
T d1u8xx1 76 TDVDFVMAHIRVG 88 (167)
T ss_dssp SSCSEEEECCCTT
T ss_pred CCCCEEEECCCcC
Confidence 9999999998654
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.25 E-value=2.8e-06 Score=68.87 Aligned_cols=71 Identities=18% Similarity=0.319 Sum_probs=55.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|||+|-||..++.+|... |. ++++++|+.++.+.+.+.. .......++..+.+.++|
T Consensus 25 ~~ilviGaG~~g~~v~~~L~~~--g~~~i~v~nRt~~ka~~l~~~~----------------~~~~~~~~~~~~~l~~~D 86 (159)
T d1gpja2 25 KTVLVVGAGEMGKTVAKSLVDR--GVRAVLVANRTYERAVELARDL----------------GGEAVRFDELVDHLARSD 86 (159)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH--CCSEEEEECSSHHHHHHHHHHH----------------TCEECCGGGHHHHHHTCS
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCcEEEEEcCcHHHHHHHHHhh----------------hcccccchhHHHHhccCC
Confidence 5899999999999999999998 76 7999999999998876521 111122245666789999
Q ss_pred EEEEeccCCC
Q 017997 81 IVFVSVNTPT 90 (362)
Q Consensus 81 vVii~vptp~ 90 (362)
+||.|+++|.
T Consensus 87 ivi~atss~~ 96 (159)
T d1gpja2 87 VVVSATAAPH 96 (159)
T ss_dssp EEEECCSSSS
T ss_pred EEEEecCCCC
Confidence 9999987653
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.25 E-value=1.8e-06 Score=72.18 Aligned_cols=109 Identities=12% Similarity=0.099 Sum_probs=74.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.+|..+|..+..- |.+|.+||+....-+.... .......++++.++.||+
T Consensus 48 ~tvgIiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~~~~~~~-------------------~~~~~~~~l~~ll~~sD~ 106 (191)
T d1gdha1 48 KTLGIYGFGSIGQALAKRAQGF--DMDIDYFDTHRASSSDEAS-------------------YQATFHDSLDSLLSVSQF 106 (191)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSCCCHHHHHH-------------------HTCEECSSHHHHHHHCSE
T ss_pred cceEEeecccchHHHHHHHHhh--ccccccccccccccchhhc-------------------ccccccCCHHHHHhhCCe
Confidence 5799999999999999888776 9999999986432221111 012445678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|-.....+ -.| +.....++++.++|+.|=-..=..+.+.+.|++.
T Consensus 107 v~l~~plt~~T~~-----li~--------~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g 156 (191)
T d1gdha1 107 FSLNAPSTPETRY-----FFN--------KATIKSLPQGAIVVNTARGDLVDNELVVAALEAG 156 (191)
T ss_dssp EEECCCCCTTTTT-----CBS--------HHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEecCCCCchHhh-----eec--------HHHhhCcCCccEEEecCCccchhhHHHHHHHHcC
Confidence 9999875322211 222 3455678999999987653333345677777664
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=98.18 E-value=2.8e-06 Score=69.16 Aligned_cols=78 Identities=19% Similarity=0.175 Sum_probs=54.3
Q ss_pred ceEEEEcCChhHHHHHHH-HHHc---CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAV-IALK---CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~-la~~---~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
|||+|||+|.+|.+.+.. +++. .+..++.++|+|+++.+....- ..... .....+..+++..++++
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~--------~~~~~--~~~~~~~~t~~~~~~l~ 70 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDF--------VKRLV--KDRFKVLISDTFEGAVV 70 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHH--------HHHHH--TTSSEEEECSSHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHH--------HHhhh--ccCceEEEecCcccccC
Confidence 899999999999888844 3332 1135899999999987754320 00001 11234677888888899
Q ss_pred CCcEEEEeccCC
Q 017997 78 EADIVFVSVNTP 89 (362)
Q Consensus 78 ~aDvVii~vptp 89 (362)
+||+|+++...+
T Consensus 71 ~aDvVVita~~~ 82 (162)
T d1up7a1 71 DAKYVIFQFRPG 82 (162)
T ss_dssp TCSEEEECCCTT
T ss_pred CCCEEEEecccC
Confidence 999999997654
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.18 E-value=3.2e-06 Score=68.15 Aligned_cols=117 Identities=20% Similarity=0.293 Sum_probs=70.4
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCC-C----CeEEEE--eCCHHHHHHHHcCCCCCCCCChHHHHhhh---cCCCEEEec
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCP-S----IEVAVV--DISVSRINAWNSDQLPIYEPGLDGVVKQC---RGKNLFFST 70 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~-G----~~V~~~--d~~~~~~~~l~~~~~~~~e~~l~~~~~~~---~~~~l~~t~ 70 (362)
|||+|||+ |.+|.++|..|+.... + ....++ +.+.++.+.+... +... .......++
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 72 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVME------------LEDCAFPLLAGLEATD 72 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH------------HHTTTCTTEEEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhh------------hhccccccccccccCC
Confidence 79999996 9999999999987610 1 112333 3444444433210 0000 112356667
Q ss_pred CHHhhhcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 71 d~~~a~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
+..++++++|+|+++-..|..+ | .++ ..+...+++..+.|.++.+++.+|++-| .|....
T Consensus 73 ~~~~~~~~advViitaG~~~~p-g--~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs-NPvDv~ 136 (154)
T d1y7ta1 73 DPKVAFKDADYALLVGAAPRKA-G--MERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG-NPANTN 136 (154)
T ss_dssp CHHHHTTTCSEEEECCCCCCCT-T--CCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS-SSHHHH
T ss_pred chhhhcccccEEEeecCcCCCC-C--CcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec-CcHHHH
Confidence 7777899999999998766543 1 011 1124566777788888877777665533 455443
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=6.9e-06 Score=68.43 Aligned_cols=105 Identities=18% Similarity=0.188 Sum_probs=72.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.+|..+|..+..- |.+|++||+.... .. .......++++.++.||+
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~---------~~--------------~~~~~~~~l~ell~~sDi 99 (188)
T d1sc6a1 45 KKLGIIGYGHIGTQLGILAESL--GMYVYFYDIENKL---------PL--------------GNATQVQHLSDLLNMSDV 99 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCC---------CC--------------TTCEECSCHHHHHHHCSE
T ss_pred eEEEEeecccchhhhhhhcccc--cceEeeccccccc---------hh--------------hhhhhhhhHHHHHhhccc
Confidence 5899999999999999988776 9999999985310 00 112334578888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|-.....+ -.| ++..+.++++.++|+.|--+.=..+.|.+.|.+.
T Consensus 100 i~i~~plt~~T~~-----li~--------~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~ 149 (188)
T d1sc6a1 100 VSLHVPENPSTKN-----MMG--------AKEISLMKPGSLLINASRGTVVDIPALADALASK 149 (188)
T ss_dssp EEECCCSSTTTTT-----CBC--------HHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTT
T ss_pred eeecccCCcchhh-----hcc--------HHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcC
Confidence 9999884332211 222 3445668899999987654333455677777653
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.15 E-value=5.5e-06 Score=68.78 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=73.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++++|+|+|.+|..+|..+..- |.+|++||+....-..... ... ..+.++.++.||+
T Consensus 45 k~vgiiG~G~IG~~va~~~~~f--g~~v~~~d~~~~~~~~~~~--------------------~~~-~~~l~ell~~sDi 101 (184)
T d1ygya1 45 KTVGVVGLGRIGQLVAQRIAAF--GAYVVAYDPYVSPARAAQL--------------------GIE-LLSLDDLLARADF 101 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECTTSCHHHHHHH--------------------TCE-ECCHHHHHHHCSE
T ss_pred eeeeeccccchhHHHHHHhhhc--cceEEeecCCCChhHHhhc--------------------Cce-eccHHHHHhhCCE
Confidence 4799999999999999888765 8999999986543322221 122 2467888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|-.....+ -.| ++....++++.++|+.|=-+.=..+.+.+.|++.
T Consensus 102 v~~~~Plt~~T~~-----lin--------~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~ 151 (184)
T d1ygya1 102 ISVHLPKTPETAG-----LID--------KEALAKTKPGVIIVNAARGGLVDEAALADAITGG 151 (184)
T ss_dssp EEECCCCSTTTTT-----CBC--------HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTS
T ss_pred EEEcCCCCchhhh-----hhh--------HHHHhhhCCCceEEEecchhhhhhHHHHHHHhcC
Confidence 9999884322211 222 3455678999999987653333345677777664
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.10 E-value=7.1e-06 Score=68.96 Aligned_cols=105 Identities=12% Similarity=0.186 Sum_probs=71.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.+|..+|..+..- |.+|++||+.+.. .. ...... .+.++.++.||+
T Consensus 46 ktvgIiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~------~~----------------~~~~~~-~~l~~l~~~~D~ 100 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGF--GAKVIAYDPYPMK------GD----------------HPDFDY-VSLEDLFKQSDV 100 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCS------SC----------------CTTCEE-CCHHHHHHHCSE
T ss_pred eeeeeeeccccccccccccccc--ceeeeccCCccch------hh----------------hcchhH-HHHHHHHHhccc
Confidence 4899999999999999998876 9999999985321 00 011233 467888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|......+ -.| ++....++++.++|+.|--..=..+.+.+.|++.
T Consensus 101 v~~~~plt~~T~~-----li~--------~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g 150 (199)
T d1dxya1 101 IDLHVPGIEQNTH-----IIN--------EAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSG 150 (199)
T ss_dssp EEECCCCCGGGTT-----SBC--------HHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTT
T ss_pred ceeeecccccccc-----ccc--------HHHhhccCCceEEEecccHhhhhhHHHHHHHhcC
Confidence 9999875432211 222 2344568999999987753333345666666653
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=98.09 E-value=1.9e-05 Score=62.47 Aligned_cols=116 Identities=22% Similarity=0.280 Sum_probs=67.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHhhhcCCCEE-EecCHHhhhc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQCRGKNLF-FSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~--~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~-~t~d~~~a~~ 77 (362)
.||+||| .|.+|.++|..++.++...++.++|++. +..+.... ++..... ...+.+ .+.++++ ++
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~--------Dl~~~~~--~~~~~~i~~~~~~~-~~ 69 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAA--------DTNHGIA--YDSNTRVRQGGYED-TA 69 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHH--------HHHHHHT--TTCCCEEEECCGGG-GT
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeec--------chhhccc--ccCCceEeeCCHHH-hh
Confidence 4899999 6999999999999883334899999753 33321111 0111000 011222 3456665 89
Q ss_pred CCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
+||+|+++...|... |. +| ..+...+++..++|.++. ++.++++ -|.|...
T Consensus 70 ~aDiVvitaG~~~~~-g~--~R~dl~~~N~~I~~~i~~~i~~~~-p~~i~iv-vtNPvDv 124 (142)
T d1o6za1 70 GSDVVVITAGIPRQP-GQ--TRIDLAGDNAPIMEDIQSSLDEHN-DDYISLT-TSNPVDL 124 (142)
T ss_dssp TCSEEEECCCCCCCT-TC--CHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEE-CCSSHHH
T ss_pred hcCEEEEeccccccc-CC--chhhHHHHHHHHHHHHHHHHHhcC-CCceEEE-ecChHHH
Confidence 999999998766543 10 10 112345566667777665 4455543 2456543
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=6e-06 Score=66.58 Aligned_cols=89 Identities=16% Similarity=0.091 Sum_probs=65.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~-~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++++|+|.|.+|..+|..+... |.+|+++|++|-+ +++...| +.. ...++++..+|
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~--G~~V~v~e~dp~~al~A~~dG--------------------~~v-~~~~~a~~~ad 81 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGF--GARVIITEIDPINALQAAMEG--------------------YEV-TTMDEACQEGN 81 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTT--------------------CEE-CCHHHHTTTCS
T ss_pred CEEEEeccccccHHHHHHHHhC--CCeeEeeecccchhHHhhcCc--------------------eEe-eehhhhhhhcc
Confidence 4799999999999999999998 9999999999944 3333332 333 35677899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~ 130 (362)
+++.|+.++. ..+. +-.+.++++.++.+.+...
T Consensus 82 ivvtaTGn~~---------vI~~--------eh~~~MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 82 IFVTTTGCID---------IILG--------RHFEQMKDDAIVCNIGHFD 114 (163)
T ss_dssp EEEECSSCSC---------SBCH--------HHHTTCCTTEEEEECSSST
T ss_pred EEEecCCCcc---------chhH--------HHHHhccCCeEEEEecccc
Confidence 9999977532 1222 2345689999988755443
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.08 E-value=1.3e-05 Score=66.23 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=49.7
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--
Q 017997 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (362)
+||+|||+|.+|.. .+..+.+....++++ ++|+++++.+.+.+.. +.....+|+++.++
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~-----------------~~~~~~~~~~ell~~~ 66 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV-----------------GNPAVFDSYEELLESG 66 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH-----------------SSCEEESCHHHHHHSS
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccc-----------------cccceeeeeecccccc
Confidence 48999999999986 466666542134666 6799999988765420 22355688888765
Q ss_pred CCcEEEEeccC
Q 017997 78 EADIVFVSVNT 88 (362)
Q Consensus 78 ~aDvVii~vpt 88 (362)
+.|+|++|+|+
T Consensus 67 ~id~v~I~tp~ 77 (181)
T d1zh8a1 67 LVDAVDLTLPV 77 (181)
T ss_dssp CCSEEEECCCG
T ss_pred ccceeeccccc
Confidence 58999999764
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=2.2e-06 Score=72.25 Aligned_cols=75 Identities=27% Similarity=0.308 Sum_probs=53.5
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|+||.|+| .|++|..++..|.++ ||+|++++|++++..........+. .+.+.-.++..++++++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~--g~~V~~~~R~~~~~~~~~~~~~~~~------------~gD~~d~~~l~~al~~~ 68 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQA--GYEVTVLVRDSSRLPSEGPRPAHVV------------VGDVLQAADVDKTVAGQ 68 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCGGGSCSSSCCCSEEE------------ESCTTSHHHHHHHHTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--cCEEEEEEcChhhcccccccccccc------------cccccchhhHHHHhcCC
Confidence 57999999 699999999999999 9999999999887543322111110 01111123456678999
Q ss_pred cEEEEeccCC
Q 017997 80 DIVFVSVNTP 89 (362)
Q Consensus 80 DvVii~vptp 89 (362)
|+||.|++..
T Consensus 69 d~vi~~~g~~ 78 (205)
T d1hdoa_ 69 DAVIVLLGTR 78 (205)
T ss_dssp SEEEECCCCT
T ss_pred CEEEEEeccC
Confidence 9999998754
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.02 E-value=6e-06 Score=66.82 Aligned_cols=101 Identities=20% Similarity=0.297 Sum_probs=72.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-e---cCHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-S---TDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t---~d~~~a~~ 77 (362)
.||.|||.|..|+.-++..... |-+|+++|+++++++.+++-. . +++.. . ..+++.++
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~------------~----~~~~~~~~~~~~l~~~~~ 94 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLF------------G----SRVELLYSNSAEIETAVA 94 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH------------G----GGSEEEECCHHHHHHHHH
T ss_pred cEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhh------------c----ccceeehhhhhhHHHhhc
Confidence 3899999999999877777777 999999999999998876521 0 11111 1 23456789
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
+||+||-++--|-.. .|-+ +.+++.+.++++.+||+.|.=..|
T Consensus 95 ~aDivI~aalipG~~-------aP~l-----It~~mv~~Mk~GSVIVDvaidqGG 137 (168)
T d1pjca1 95 EADLLIGAVLVPGRR-------APIL-----VPASLVEQMRTGSVIVDVAVDQGG 137 (168)
T ss_dssp TCSEEEECCCCTTSS-------CCCC-----BCHHHHTTSCTTCEEEETTCTTCC
T ss_pred cCcEEEEeeecCCcc-------cCee-----ecHHHHhhcCCCcEEEEeecCCCC
Confidence 999999998766432 3322 346777889999999986654444
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.01 E-value=2.1e-05 Score=63.14 Aligned_cols=116 Identities=16% Similarity=0.278 Sum_probs=71.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCC-C----CeEEEEeCCHH--HHHHHHcCCCCCCCCChHHHHhhh---cCCCEEEec
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCP-S----IEVAVVDISVS--RINAWNSDQLPIYEPGLDGVVKQC---RGKNLFFST 70 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~-G----~~V~~~d~~~~--~~~~l~~~~~~~~e~~l~~~~~~~---~~~~l~~t~ 70 (362)
|||+|||+ |.+|.++|..|+.... + .+...+|+++. +.+.+.-. +... .......++
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~------------~~~~~~~~~~~~~~~~ 71 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLME------------LQDCALPLLKDVIATD 71 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH------------HHHTCCTTEEEEEEES
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhh------------hcccccccccccccCc
Confidence 79999995 9999999999986410 1 25778887643 33333210 0000 112356677
Q ss_pred CHHhhhcCCcEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 71 d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~-----~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
+..++++++|+|+++-..|... | .+ ..|+ ..+++..+.|.++.++..++++ -|.|....
T Consensus 72 ~~~~~~~~~dvVVitag~~~~~-g--~s-r~dll~~N~~i~k~~~~~i~k~a~~~~~iiv-vsNPvD~m 135 (154)
T d5mdha1 72 KEEIAFKDLDVAILVGSMPRRD-G--ME-RKDLLKANVKIFKCQGAALDKYAKKSVKVIV-VGNPANTN 135 (154)
T ss_dssp CHHHHTTTCSEEEECCSCCCCT-T--CC-TTTTHHHHHHHHHHHHHHHHHHSCTTCEEEE-CSSSHHHH
T ss_pred ccccccCCceEEEEecccCCCC-C--Cc-hhHHHHHhHHHHHHHHHHHHhhCCCceEEEE-ecCcHHHH
Confidence 7778899999999998776543 1 12 2233 5566667777777766654443 24565443
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.98 E-value=2.1e-05 Score=64.17 Aligned_cols=80 Identities=21% Similarity=0.255 Sum_probs=49.7
Q ss_pred ceEEEEcCChhHHH--HHHHHHHcC--CCCeEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHh
Q 017997 2 VKICCIGAGYVGGP--TMAVIALKC--PSIEVAVVDISVSR--INAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEK 74 (362)
Q Consensus 2 mkI~VIGlG~~G~~--lA~~la~~~--~G~~V~~~d~~~~~--~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~ 74 (362)
|||+|||+|.+|.+ ++..+.... +.-+++++|+++++ .+.+..- ....... -..-++..++|..+
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~--------~~~~~~~~~~~~~~~~~td~~~ 73 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGAL--------AKRMVEKAGVPIEIHLTLDRRR 73 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHH--------HHHHHHHTTCCCEEEEESCHHH
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHH--------HHHHHHhcCCCceeeecCCchh
Confidence 79999999988754 333333320 01389999998754 3332210 0000111 11234678899888
Q ss_pred hhcCCcEEEEeccCC
Q 017997 75 HVSEADIVFVSVNTP 89 (362)
Q Consensus 75 a~~~aDvVii~vptp 89 (362)
++++||+|+++...+
T Consensus 74 al~gaDvVv~ta~~~ 88 (169)
T d1s6ya1 74 ALDGADFVTTQFRVG 88 (169)
T ss_dssp HHTTCSEEEECCCTT
T ss_pred hcCCCCEEEEccccC
Confidence 899999999998754
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.88 E-value=8.7e-06 Score=66.62 Aligned_cols=65 Identities=20% Similarity=0.451 Sum_probs=46.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~-~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+||+|||+|+||..++..+.+. +++++++ +|++++... ........+..+...+.|
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~-~~~elvav~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~D 60 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQ-PDMDLVGIFSRRATLDT----------------------KTPVFDVADVDKHADDVD 60 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-SSEEEEEEEESSSCCSS----------------------SSCEEEGGGGGGTTTTCS
T ss_pred ceEEEECChHHHHHHHHHHHhC-CCcEEEEEEeccccccc----------------------ccccccchhhhhhccccc
Confidence 4799999999999998888764 4777664 576643210 123455667777778999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+|++|+|+.
T Consensus 61 ~Vvi~tp~~ 69 (170)
T d1f06a1 61 VLFLCMGSA 69 (170)
T ss_dssp EEEECSCTT
T ss_pred eEEEeCCCc
Confidence 999997753
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.81 E-value=5.8e-05 Score=61.78 Aligned_cols=121 Identities=14% Similarity=0.167 Sum_probs=72.8
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCC-C----CeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCP-S----IEVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~-G----~~V~~~d~~~--~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (362)
.||+|+|+ |.+|.+++..|+...- | ..+.++|+++ +.++.+.-......-+ .......+++..
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~---------~~~~~~~~~~~~ 95 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYP---------LLREVSIGIDPY 95 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCT---------TEEEEEEESCHH
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccc---------cccCccccccch
Confidence 38999996 9999999999987410 2 2566777754 2333222100000000 012356778888
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHH
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~~~d-----~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~ 136 (362)
++++++|+||++-..|..+ |+ + ..| ...+++..+.|.++.+++.+|+.-| .|..+.-.
T Consensus 96 ~~~~~aDvVvi~ag~~rkp-g~--t-R~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~-NPvd~~t~ 158 (175)
T d7mdha1 96 EVFEDVDWALLIGAKPRGP-GM--E-RAALLDINGQIFADQGKALNAVASKNVKVLVVG-NPCNTNAL 158 (175)
T ss_dssp HHTTTCSEEEECCCCCCCT-TC--C-HHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS-SSHHHHHH
T ss_pred hhccCCceEEEeeccCCCC-CC--c-HHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec-CcHHHHHH
Confidence 8899999999998766433 21 1 112 2445667778888877777665544 46555433
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=1.6e-05 Score=58.07 Aligned_cols=68 Identities=13% Similarity=0.223 Sum_probs=47.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH--HHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS--RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~--~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
.||.|+|+|..|.++|..|++. |++|+++|.+.. ..+.+++ ...+.+.......+.+.
T Consensus 6 K~v~ViGlG~sG~s~a~~L~~~--g~~v~~~D~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~ 65 (93)
T d2jfga1 6 KNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMTPPGLDKLPE------------------AVERHTGSLNDEWLMAA 65 (93)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCCEEEESSSSCTTGGGSCT------------------TSCEEESBCCHHHHHHC
T ss_pred CEEEEEeECHHHHHHHHHHHHC--CCEEEEeeCCcCchhHHHHhh------------------ccceeecccchhhhccC
Confidence 4799999999999999999999 999999998532 1111111 12233333334457899
Q ss_pred cEEEEeccCC
Q 017997 80 DIVFVSVNTP 89 (362)
Q Consensus 80 DvVii~vptp 89 (362)
|+||++-.-|
T Consensus 66 d~vi~SPGi~ 75 (93)
T d2jfga1 66 DLIVASPGIA 75 (93)
T ss_dssp SEEEECTTSC
T ss_pred CEEEECCCCC
Confidence 9999985544
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.74 E-value=5e-05 Score=64.67 Aligned_cols=72 Identities=13% Similarity=0.208 Sum_probs=49.7
Q ss_pred eEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--C
Q 017997 3 KICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (362)
Q Consensus 3 kI~VIGlG~~G~~-lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (362)
||+|||+|.||.. +...+... ++.+|+ ++|+++++.+.+.+.. +++ ...+...+|+++.++ +
T Consensus 35 riaiIG~G~~~~~~~~~~~~~~-~~~~ivav~d~~~~~a~~~~~~~------~i~-------~~~~~~~~d~~ell~~~~ 100 (221)
T d1h6da1 35 GYAIVGLGKYALNQILPGFAGC-QHSRIEALVSGNAEKAKIVAAEY------GVD-------PRKIYDYSNFDKIAKDPK 100 (221)
T ss_dssp EEEEECCSHHHHHTHHHHTTTC-SSEEEEEEECSCHHHHHHHHHHT------TCC-------GGGEECSSSGGGGGGCTT
T ss_pred EEEEEcCcHHHHHHHHHHHHhC-CCceEEEEecCCHHHHHHHHHhh------ccc-------cccccccCchhhhccccc
Confidence 8999999999974 44555443 367776 6799999988776521 000 122455677887664 6
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
.|+|+||+|.
T Consensus 101 iD~V~I~tp~ 110 (221)
T d1h6da1 101 IDAVYIILPN 110 (221)
T ss_dssp CCEEEECSCG
T ss_pred ceeeeeccch
Confidence 8999999774
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.74 E-value=7.7e-05 Score=59.93 Aligned_cols=98 Identities=15% Similarity=0.286 Sum_probs=54.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHH--HHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVS--RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~--~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
+||||||+|.+|..+...+.+..|..+++.+ +++++ .++...+...+....+.+++++ ++ + ..+
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~-----------~~-~-~~~ 71 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIK-----------LP-E-FAD 71 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHH-----------SG-G-GGG
T ss_pred cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeee-----------cc-c-ccc
Confidence 5899999999998644334444456677665 77754 2233333333333222322221 11 1 357
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
.|+||+|+|... +.. -....+.++.|..|++.|.
T Consensus 72 iDiVf~ATpag~--------------h~~--~~~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 72 IDFVFDATSASA--------------HVQ--NEALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp EEEEEECSCHHH--------------HHH--HHHHHHHHCTTCEEEECST
T ss_pred cCEEEEcCCchh--------------HHH--hHHHHHHHHcCCEEEEccc
Confidence 899999976321 111 1122334578899988775
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.71 E-value=5.9e-05 Score=60.35 Aligned_cols=90 Identities=12% Similarity=0.066 Sum_probs=65.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+++.|+|-|++|..+|..+... |-+|+++++||-+ +|+.- ...++. .+.+++++.+|+
T Consensus 24 k~vvV~GYG~vGrG~A~~~rg~--Ga~V~V~E~DPi~--alqA~-----------------mdGf~v-~~~~~a~~~aDi 81 (163)
T d1v8ba1 24 KIVVICGYGDVGKGCASSMKGL--GARVYITEIDPIC--AIQAV-----------------MEGFNV-VTLDEIVDKGDF 81 (163)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCHHH--HHHHH-----------------TTTCEE-CCHHHHTTTCSE
T ss_pred CEEEEecccccchhHHHHHHhC--CCEEEEEecCchh--hHHHH-----------------hcCCcc-CchhHccccCcE
Confidence 4799999999999999999998 9999999999944 33321 122444 567888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~ 130 (362)
+|.+++.+. ..+ .+-.+.++++.||.+..-+.
T Consensus 82 ~vTaTGn~~---------vI~--------~~h~~~MKdgaIl~N~GHfd 113 (163)
T d1v8ba1 82 FITCTGNVD---------VIK--------LEHLLKMKNNAVVGNIGHFD 113 (163)
T ss_dssp EEECCSSSS---------SBC--------HHHHTTCCTTCEEEECSSTT
T ss_pred EEEcCCCCc---------ccc--------HHHHHHhhCCeEEEeccccc
Confidence 999977432 112 23345689999998754443
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.69 E-value=5e-05 Score=62.09 Aligned_cols=116 Identities=15% Similarity=0.153 Sum_probs=71.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCC---ChHHHHhh-----hcCCCEE--EecCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEP---GLDGVVKQ-----CRGKNLF--FSTDV 72 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~---~l~~~~~~-----~~~~~l~--~t~d~ 72 (362)
||.|||+|..|+.-+...... |-.|+++|+++++.+++++-...+-+. ........ ....... ....+
T Consensus 31 ~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l 108 (183)
T d1l7da1 31 RVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAV 108 (183)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHH
Confidence 899999999999766666666 999999999999999988643222111 00000000 0000000 01123
Q ss_pred HhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 73 ~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
.+.++++|+||.++-.|-.. .|-+ +-+++.+.+++|.+||+-+--..|
T Consensus 109 ~~~l~~aDlVI~talipG~~-------aP~l-----it~~mv~~Mk~GSVIVDvaidqGG 156 (183)
T d1l7da1 109 LKELVKTDIAITTALIPGKP-------APVL-----ITEEMVTKMKPGSVIIDLAVEAGG 156 (183)
T ss_dssp HHHHTTCSEEEECCCCTTSC-------CCCC-----SCHHHHTTSCTTCEEEETTGGGTC
T ss_pred HHHHHhhhhheeeeecCCcc-------ccee-----ehHHHHHhcCCCcEEEEEeecCCC
Confidence 44578999999998776432 3322 346777889999999986543333
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.62 E-value=0.00016 Score=60.40 Aligned_cols=110 Identities=21% Similarity=0.238 Sum_probs=70.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh-cCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (362)
.+|+|.|.|.||..+|..|.+. |.+|+++|.++++++...... .... +.++.+ .+||
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~--Gakvvv~d~d~~~~~~~~~~g-------------------~~~~-~~~~~~~~~~D 85 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEA--GAQLLVADTDTERVAHAVALG-------------------HTAV-ALEDVLSTPCD 85 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTT-------------------CEEC-CGGGGGGCCCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEecchHHHHHHHHhhc-------------------cccc-Cccccccccce
Confidence 4799999999999999999999 999999999999888765421 1222 223333 4899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
+++-|-- .- ..+ .+.++. ++ -.+| .+....|-+.+...+.|.++ .+.+.|.++
T Consensus 86 I~iPcA~-~~---------~I~----~~~a~~----i~-ak~i-~e~AN~p~~~~~~~~~L~~r------gI~~iPD~l 138 (201)
T d1c1da1 86 VFAPCAM-GG---------VIT----TEVART----LD-CSVV-AGAANNVIADEAASDILHAR------GILYAPDFV 138 (201)
T ss_dssp EEEECSC-SC---------CBC----HHHHHH----CC-CSEE-CCSCTTCBCSHHHHHHHHHT------TCEECCHHH
T ss_pred eeecccc-cc---------ccc----HHHHhh----hh-hhee-eccCCCCcchhhHHHHhccc------ceEEEehhh
Confidence 8887732 11 222 222332 33 2444 44444455555566667665 246788765
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.54 E-value=0.00017 Score=59.03 Aligned_cols=84 Identities=20% Similarity=0.248 Sum_probs=53.3
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHH-HHHHHcCCCCCCCCCh-HHHHhhhcCCCEEEecCHHhhhc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSR-INAWNSDQLPIYEPGL-DGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~~-~~~l~~~~~~~~e~~l-~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
|.||+|.|.|.+|..+++.+.++ ++.+|+++ |+++.. ...+.....+.+...- ...+ ....+....+..+...
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~-~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~v~g~~~~~~~ 76 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQ-PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKF---EESGIPVAGTVEDLIK 76 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHH---HTTTCCCCCCHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHhC-CCCEEEEEECCCCcHHHHHhcccCcceeccCccceec---cccceecCCchhhhhh
Confidence 67999999999999999999876 47888886 554332 2222222222222111 1111 1234555566777778
Q ss_pred CCcEEEEeccC
Q 017997 78 EADIVFVSVNT 88 (362)
Q Consensus 78 ~aDvVii~vpt 88 (362)
++|+|+.|+|.
T Consensus 77 ~vDiViecTG~ 87 (178)
T d1b7go1 77 TSDIVVDTTPN 87 (178)
T ss_dssp HCSEEEECCST
T ss_pred cCCEEEECCCC
Confidence 99999999763
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=97.49 E-value=0.00018 Score=51.86 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=47.6
Q ss_pred ceEEEEcCChhHH-HHHHHHHHcCCCCeEEEEeCCH-HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGG-PTMAVIALKCPSIEVAVVDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~la~~~~G~~V~~~d~~~-~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||=+||.|-+|. ++|..|.++ |+.|+|.|+.+ +..+.|++.+.+++ .-.+.+. +.++
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~--G~~VsGSD~~~~~~t~~L~~~Gi~i~-----------------~gh~~~~-i~~~ 61 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSN--GNDVYGSNIEETERTAYLRKLGIPIF-----------------VPHSADN-WYDP 61 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEECSSCCHHHHHHHHTTCCEE-----------------SSCCTTS-CCCC
T ss_pred cEEEEEeECHHHHHHHHHHHHhC--CCeEEEEeCCCChhHHHHHHCCCeEE-----------------eeecccc-cCCC
Confidence 8999999999998 778888888 99999999976 45556665433332 1122222 6789
Q ss_pred cEEEEecc
Q 017997 80 DIVFVSVN 87 (362)
Q Consensus 80 DvVii~vp 87 (362)
|+||..-.
T Consensus 62 d~vV~SsA 69 (89)
T d1j6ua1 62 DLVIKTPA 69 (89)
T ss_dssp SEEEECTT
T ss_pred CEEEEecC
Confidence 99987743
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.45 E-value=0.00011 Score=61.27 Aligned_cols=95 Identities=13% Similarity=0.079 Sum_probs=61.7
Q ss_pred CceEEEEcCChhHHHHHHHHHHcC----CCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKC----PSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~----~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
|.||+|||.|.-|.+-|.+|.+.+ .|.+|+ +...+....++..+..... .+.+ .-+.+++
T Consensus 44 ~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v--------------~~~~-v~~v~EA 108 (226)
T d1qmga2 44 IKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSE--------------ENGT-LGDMWET 108 (226)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCG--------------GGTC-EEEHHHH
T ss_pred CCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCcc--------------CCCc-ccCHHHH
Confidence 358999999999999999999961 134454 3433323333333221100 0011 1245778
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
++.+|+|++.+|.. .-.++.++|.+++++++.+..
T Consensus 109 v~~ADiVmiLlPDe---------------~Q~~vy~~I~p~Lk~G~~L~F 143 (226)
T d1qmga2 109 ISGSDLVLLLISDS---------------AQADNYEKVFSHMKPNSILGL 143 (226)
T ss_dssp HHTCSEEEECSCHH---------------HHHHHHHHHHHHSCTTCEEEE
T ss_pred HhhCCEEEEecchH---------------HHHHHHHHHHHhcCCCceeee
Confidence 99999999998732 124566889999999998875
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.00062 Score=54.97 Aligned_cols=40 Identities=30% Similarity=0.411 Sum_probs=34.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..+..+... |. +|+++|+++++++..++
T Consensus 29 ~VlI~G~G~iG~~~~~~a~~~--G~~~Vi~~d~~~~rl~~a~~ 69 (171)
T d1pl8a2 29 KVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSATRLSKAKE 69 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCccHHHHHHHHHHc--CCceEEeccCCHHHHHHHHH
Confidence 689999999999777777666 76 79999999999998776
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.39 E-value=0.00075 Score=54.27 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=35.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..+..+... |.+|+++|+++++++.+++
T Consensus 29 ~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~ 68 (170)
T d1e3ja2 29 TVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN 68 (170)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHH
Confidence 689999999999877766666 8999999999999998776
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.39 E-value=0.00022 Score=64.35 Aligned_cols=103 Identities=12% Similarity=0.026 Sum_probs=72.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+++|||+|..+...+..+....+=.+|.+||+++++.+++.+.... ++ .-.+..++++++++++||+
T Consensus 129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~--~~----------g~~v~~~~s~~eav~~ADI 196 (340)
T d1x7da_ 129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE--YS----------GLTIRRASSVAEAVKGVDI 196 (340)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT--CT----------TCEEEECSSHHHHHTTCSE
T ss_pred ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhh--cc----------CCCceecCCHHHHHhcCCc
Confidence 47999999999999998887765446899999999998877642100 11 1236778899999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|+.|+.++... |=+ . ...++++..|..-+...|+.
T Consensus 197 i~t~Tas~s~~--------Pv~---~------~~~l~pG~hI~aiGs~~p~~ 231 (340)
T d1x7da_ 197 ITTVTADKAYA--------TII---T------PDMLEPGMHLNAVGGDCPGK 231 (340)
T ss_dssp EEECCCCSSEE--------EEE---C------GGGCCTTCEEEECSCCBTTB
T ss_pred eeeccccCCCC--------ccc---c------hhhcCCCCEEeecccchhhh
Confidence 99998665321 100 0 24578888886544444544
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=97.34 E-value=0.00051 Score=50.08 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=46.0
Q ss_pred ceEEEEcCChhH-HHHHHHHHHcCCCCeEEEEeCCH-HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVG-GPTMAVIALKCPSIEVAVVDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G-~~lA~~la~~~~G~~V~~~d~~~-~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
++|-+||.|-.| +++|..|.+. ||+|+|+|... ...+.+.+.... +..-.+.+ -+.++
T Consensus 9 ~~ihfiGigG~GMs~LA~~L~~~--G~~VsGSD~~~~~~~~~L~~~Gi~-----------------v~~g~~~~-~i~~~ 68 (96)
T d1p3da1 9 QQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVVTQRLAQAGAK-----------------IYIGHAEE-HIEGA 68 (96)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHHHHHHHHTTCE-----------------EEESCCGG-GGTTC
T ss_pred CEEEEEEECHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhHHHHCCCe-----------------EEECCccc-cCCCC
Confidence 689999999999 5679999999 99999999863 333444432111 22222333 37889
Q ss_pred cEEEEeccCC
Q 017997 80 DIVFVSVNTP 89 (362)
Q Consensus 80 DvVii~vptp 89 (362)
|+||..-.-|
T Consensus 69 d~vV~S~AI~ 78 (96)
T d1p3da1 69 SVVVVSSAIK 78 (96)
T ss_dssp SEEEECTTSC
T ss_pred CEEEECCCcC
Confidence 9998874433
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.32 E-value=0.00043 Score=55.68 Aligned_cols=90 Identities=19% Similarity=0.145 Sum_probs=65.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH-HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~-~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|+|||.|.-|.+-|.+|.+. |.+|++=-|.. ...++..+ ..+.. -+.+++++.+|
T Consensus 17 k~IaViGYGsQG~AhAlNLrDS--G~~V~VGLr~gs~s~~~A~~-------------------~Gf~v-~~~~eA~~~aD 74 (182)
T d1np3a2 17 KKVAIIGYGSQGHAHACNLKDS--GVDVTVGLRSGSATVAKAEA-------------------HGLKV-ADVKTAVAAAD 74 (182)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT--TCCEEEECCTTCHHHHHHHH-------------------TTCEE-ECHHHHHHTCS
T ss_pred CEEEEEeeCcHhHHHHhhhhhc--CCCEEEEcCCCCccHHHHhh-------------------hcccc-ccHHHHhhhcC
Confidence 5899999999999999999999 99988765532 22333222 12433 45788899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhcCCCCEEEEeeC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKST 128 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~-~~i~~~l~~~~iVv~~ST 128 (362)
+|.+-+|.. . -.++. +.|.+++++++.+.....
T Consensus 75 iim~L~PD~--------------~-q~~vy~~~I~p~lk~g~~L~FaHG 108 (182)
T d1np3a2 75 VVMILTPDE--------------F-QGRLYKEEIEPNLKKGATLAFAHG 108 (182)
T ss_dssp EEEECSCHH--------------H-HHHHHHHHTGGGCCTTCEEEESCC
T ss_pred eeeeecchH--------------H-HHHHHHHhhhhhcCCCcEEEEecc
Confidence 999998732 1 13455 479999999999876443
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.30 E-value=0.00045 Score=61.93 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=68.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+++|||+|..+...+..|....+-.+|.+|++++++.+++.+. .+. ..+....+.++++.+||+
T Consensus 126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~------------~~~---~~~~~~~~~~~a~~~aDi 190 (320)
T d1omoa_ 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSY------------CED---RGISASVQPAEEASRCDV 190 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHH------------HHH---TTCCEEECCHHHHTSSSE
T ss_pred cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHH------------HHh---cCCccccchhhhhccccE
Confidence 46999999999999999998766556999999999998877541 111 123344556677999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
|+.|+++.. |=+. .+.++++..|..-++..|+
T Consensus 191 V~taT~s~~----------P~~~---------~~~l~~G~hv~~iGs~~p~ 222 (320)
T d1omoa_ 191 LVTTTPSRK----------PVVK---------AEWVEEGTHINAIGADGPG 222 (320)
T ss_dssp EEECCCCSS----------CCBC---------GGGCCTTCEEEECSCCSTT
T ss_pred EEEeccCcc----------cccc---------hhhcCCCCeEeecCCcccc
Confidence 999976532 1111 2457889988665544444
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.29 E-value=0.00017 Score=58.93 Aligned_cols=75 Identities=16% Similarity=0.301 Sum_probs=45.4
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|+| .||+|.-+.+.|+++ |.+++..+--+...-+.+. +..............+.++..+++
T Consensus 1 MikVaIvGATGyvG~eLirlL~~H-P~~ei~~l~s~~~aG~~i~------------~~~p~~~~~~~~~~~~~~~~~~~~ 67 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNH-PEAKITYLSSRTYAGKKLE------------EIFPSTLENSILSEFDPEKVSKNC 67 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-TTEEEEEEECSTTTTSBHH------------HHCGGGCCCCBCBCCCHHHHHHHC
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC-CCceEEEeeccccCCCccc------------ccCchhhccccccccCHhHhcccc
Confidence 89999999 599999999999886 5677777643321111111 111110011111124555556789
Q ss_pred cEEEEeccC
Q 017997 80 DIVFVSVNT 88 (362)
Q Consensus 80 DvVii~vpt 88 (362)
|++|.|+|.
T Consensus 68 dvvf~a~p~ 76 (176)
T d1vkna1 68 DVLFTALPA 76 (176)
T ss_dssp SEEEECCST
T ss_pred ceEEEcccc
Confidence 999999874
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=97.28 E-value=0.00021 Score=54.23 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=30.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
.||.|||.|++|.-+|..|++. |.+|+++++.
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~--g~~Vtlv~~~ 54 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRL--GIDSYIFARG 54 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTT--TCEEEEECSS
T ss_pred CEEEEECCchHHHHHHHHHHhc--cccceeeehh
Confidence 5899999999999999999998 9999999984
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.21 E-value=0.00043 Score=56.58 Aligned_cols=75 Identities=20% Similarity=0.400 Sum_probs=45.3
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCH------HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHH
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISV------SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~------~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (362)
||||+|+| .||+|.-+.+.|..+ |.+++..+-.+. +++...... +. ...........+..
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~H-P~~ei~~l~~~s~~~~aGk~~~~~~~~--------~~----~~~~~~~~~~~~~~ 67 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRH-PHMTITALTVSAQSNDAGKLISDLHPQ--------LK----GIVDLPLQPMSDVR 67 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-TTEEEEEEEEETTCTTTTCBHHHHCGG--------GT----TTCCCBEEEESCGG
T ss_pred CcEEEEECcccHHHHHHHHHHHhC-CCCceEeeEeecccccccccccccccc--------cc----cccccccccchhhh
Confidence 89999999 699999999999987 567776553211 112111110 00 00011233444555
Q ss_pred hhhcCCcEEEEeccC
Q 017997 74 KHVSEADIVFVSVNT 88 (362)
Q Consensus 74 ~a~~~aDvVii~vpt 88 (362)
....++|++|.|+|.
T Consensus 68 ~~~~~~dvvf~alp~ 82 (179)
T d2g17a1 68 DFSADVDVVFLATAH 82 (179)
T ss_dssp GTCTTCCEEEECSCH
T ss_pred hhhcccceeeccccc
Confidence 446789999999873
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.17 E-value=0.00091 Score=57.10 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=47.8
Q ss_pred ceEEEEcCChhHH----HHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGG----PTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~----~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
+||||||+|.+|. .....+.+..++++++ ++|+++++.+.+.+... .......+++++.+
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~ 81 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQ---------------LKHATGFDSLESFA 81 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTT---------------CTTCEEESCHHHHH
T ss_pred eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcc---------------cccceeecchhhcc
Confidence 6899999997554 3334454433467877 57999998887654210 11234557888766
Q ss_pred c--CCcEEEEeccC
Q 017997 77 S--EADIVFVSVNT 88 (362)
Q Consensus 77 ~--~aDvVii~vpt 88 (362)
+ +.|+|++|+|+
T Consensus 82 ~~~~iD~V~i~tp~ 95 (237)
T d2nvwa1 82 QYKDIDMIVVSVKV 95 (237)
T ss_dssp HCTTCSEEEECSCH
T ss_pred cccccceeeccCCC
Confidence 4 67899999774
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.10 E-value=0.0017 Score=48.61 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=30.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.+|.|||.|.+|..-|..|.+. |.+|++++...
T Consensus 13 k~vlVvG~G~va~~ka~~ll~~--ga~v~v~~~~~ 45 (113)
T d1pjqa1 13 RDCLIVGGGDVAERKARLLLEA--GARLTVNALTF 45 (113)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TBEEEEEESSC
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccC
Confidence 4899999999999999999999 99999998653
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=97.10 E-value=0.00031 Score=57.05 Aligned_cols=84 Identities=20% Similarity=0.225 Sum_probs=50.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHH-HHHHHHcCCCCCCC--CChHHHHhhhcCCCEEEecCHHhhh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVS-RINAWNSDQLPIYE--PGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~-~~~~l~~~~~~~~e--~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
|.||+|-|.|.+|..+.+.+... +..+|+.+ |+++. ....+.....+.+. ++....... ..+....+..++.
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~-~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~v~g~~~~~~ 76 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQ-DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEK---AGIEVAGTVDDML 76 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTS-SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHH---TTCCCCEEHHHHH
T ss_pred CeEEEEEcCcHHHHHHHHHHHhC-CCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecc---cCcccCCChhHhh
Confidence 78999999999999999988776 35777765 55432 22222222222221 111111111 2344444566667
Q ss_pred cCCcEEEEeccC
Q 017997 77 SEADIVFVSVNT 88 (362)
Q Consensus 77 ~~aDvVii~vpt 88 (362)
+++|+|+.|+|.
T Consensus 77 ~~vDvViEcTG~ 88 (171)
T d1cf2o1 77 DEADIVIDCTPE 88 (171)
T ss_dssp HTCSEEEECCST
T ss_pred cCCCEEEEccCC
Confidence 899999999763
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.07 E-value=0.00018 Score=56.74 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=42.4
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALK-CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~-~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|+|+ ||+|.-+.+.|.++ .|..++..+..+.. .|. .+... ...+...+...+...++
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~------~Gk-~i~~~----------~~~~~~~~~~~~~~~~~ 65 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAES------AGQ-RMGFA----------ESSLRVGDVDSFDFSSV 65 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTT------TTC-EEEET----------TEEEECEEGGGCCGGGC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeeccc------CCc-ceeec----------cccchhccchhhhhccc
Confidence 89999996 99999999999864 25567776654322 121 11000 01122222222337899
Q ss_pred cEEEEecc
Q 017997 80 DIVFVSVN 87 (362)
Q Consensus 80 DvVii~vp 87 (362)
|++|.|+|
T Consensus 66 d~vf~a~p 73 (144)
T d2hjsa1 66 GLAFFAAA 73 (144)
T ss_dssp SEEEECSC
T ss_pred eEEEecCC
Confidence 99999976
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.0011 Score=50.85 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEE
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAV 31 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~ 31 (362)
|||+|+|+ |.||..++..+.+. ||++++
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~--~~~l~~ 29 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEK--GHELVL 29 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcC--CCeEEE
Confidence 89999996 99999999888877 888764
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.96 E-value=0.00094 Score=54.18 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=32.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..+..+... |. +|+++|+++++.+..++
T Consensus 30 ~VlI~GaG~vGl~~~q~ak~~--Ga~~Vi~~d~~~~r~~~a~~ 70 (174)
T d1jqba2 30 SVVVIGIGAVGLMGIAGAKLR--GAGRIIGVGSRPICVEAAKF 70 (174)
T ss_dssp CEEEECCSHHHHHHHHHHHTT--TCSCEEEECCCHHHHHHHHH
T ss_pred EEEEEcCCcchhhhhhhhhcc--cccccccccchhhhHHHHHh
Confidence 689999999998766555555 65 79999999999887765
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.0012 Score=53.36 Aligned_cols=72 Identities=17% Similarity=0.121 Sum_probs=53.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|.|+|+|..+.+++..|.+. |.+|++++|+.++.+.+.+.... ...+...+..+....++|+
T Consensus 19 k~vlIlGaGGaarai~~al~~~--g~~i~I~nRt~~ka~~l~~~~~~--------------~~~~~~~~~~~~~~~~~dl 82 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSL--DCAVTITNRTVSRAEELAKLFAH--------------TGSIQALSMDELEGHEFDL 82 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHTGG--------------GSSEEECCSGGGTTCCCSE
T ss_pred CEEEEECCcHHHHHHHHHhccc--ceEEEeccchHHHHHHHHHHHhh--------------cccccccccccccccccce
Confidence 4799999999999999999998 88999999999999887652110 1234433332222567999
Q ss_pred EEEeccCC
Q 017997 82 VFVSVNTP 89 (362)
Q Consensus 82 Vii~vptp 89 (362)
||-|+|..
T Consensus 83 iIN~Tp~G 90 (170)
T d1nyta1 83 IINATSSG 90 (170)
T ss_dssp EEECCSCG
T ss_pred eecccccC
Confidence 99997653
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.0015 Score=51.44 Aligned_cols=72 Identities=21% Similarity=0.220 Sum_probs=41.6
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKC--PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~--~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
|.||||+|+ |++|.-+...|.++. |-.+++.+..+... +..+..... ........+.. .++
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~------g~~~~~~~~---------~~~~~~~~~~~-~~~ 64 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG------QAAPSFGGT---------TGTLQDAFDLE-ALK 64 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT------SBCCGGGTC---------CCBCEETTCHH-HHH
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc------cccccccCC---------ceeeecccchh-hhh
Confidence 789999996 999999997766541 22356666654221 111100000 01111223333 478
Q ss_pred CCcEEEEeccC
Q 017997 78 EADIVFVSVNT 88 (362)
Q Consensus 78 ~aDvVii~vpt 88 (362)
++|++|.|+|.
T Consensus 65 ~~DivF~a~~~ 75 (146)
T d1t4ba1 65 ALDIIVTCQGG 75 (146)
T ss_dssp TCSEEEECSCH
T ss_pred cCcEEEEecCc
Confidence 99999999873
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.87 E-value=0.0023 Score=51.95 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=33.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|......+... |. +|+++|+++++.+.+++
T Consensus 31 ~VlV~GaG~iG~~~~~~ak~~--Ga~~Vi~~~~~~~~~~~a~~ 71 (182)
T d1vj0a2 31 TVVIQGAGPLGLFGVVIARSL--GAENVIVIAGSPNRLKLAEE 71 (182)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TBSEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCccchhheeccccc--cccccccccccccccccccc
Confidence 689999999998666665555 76 89999999999998876
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.86 E-value=0.00047 Score=58.60 Aligned_cols=31 Identities=19% Similarity=0.448 Sum_probs=29.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
||.|||+|..|++.|..|+++ |++|+++|++
T Consensus 8 kVvVIGaGiaGl~~A~~L~~~--G~~V~vier~ 38 (268)
T d1c0pa1 8 RVVVLGSGVIGLSSALILARK--GYSVHILARD 38 (268)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred cEEEECccHHHHHHHHHHHHC--CCCEEEEeCC
Confidence 899999999999999999999 9999999985
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.00081 Score=53.97 Aligned_cols=73 Identities=8% Similarity=0.161 Sum_probs=43.3
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~-~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|+|+ |.||..++..+.+. ++.++++ +|+.... .+. ..+.++... ....+..++++++....+
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~-~~~~lv~~~~~~~~~--~~g--------~d~~~~~~~-~~~~~~~~~~~~~~~~~~ 72 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALAL-EGVQLGAALEREGSS--LLG--------SDAGELAGA-GKTGVTVQSSLDAVKDDF 72 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-TTEECCCEECCTTCT--TCS--------CCTTCSSSS-SCCSCCEESCSTTTTTSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecccch--hcc--------chhhhhhcc-ccCCceeeccHHHHhccc
Confidence 79999995 99999999888775 2666543 4542110 000 000000000 012356678888778899
Q ss_pred cEEEEec
Q 017997 80 DIVFVSV 86 (362)
Q Consensus 80 DvVii~v 86 (362)
|+||=-.
T Consensus 73 DViIDFs 79 (162)
T d1diha1 73 DVFIDFT 79 (162)
T ss_dssp SEEEECS
T ss_pred ceEEEec
Confidence 9887663
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=96.77 E-value=0.00038 Score=60.11 Aligned_cols=32 Identities=13% Similarity=0.338 Sum_probs=30.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
|+|+|||.|.-|++.|..|+++ |++|++++.+
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~--G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSR--GTDAVLLESS 32 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTT--TCCEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCCEEEEecC
Confidence 8999999999999999999999 9999999975
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.74 E-value=0.00088 Score=54.25 Aligned_cols=72 Identities=10% Similarity=0.080 Sum_probs=52.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|.|+|+|.++.+++..|.+. +.+|++++|++++.+.+.+.. .. ..++.........+.++|+
T Consensus 19 k~vlIlGaGGaarai~~aL~~~--~~~i~I~nR~~~~a~~l~~~~------------~~--~~~~~~~~~~~~~~~~~di 82 (171)
T d1p77a1 19 QHVLILGAGGATKGVLLPLLQA--QQNIVLANRTFSKTKELAERF------------QP--YGNIQAVSMDSIPLQTYDL 82 (171)
T ss_dssp CEEEEECCSHHHHTTHHHHHHT--TCEEEEEESSHHHHHHHHHHH------------GG--GSCEEEEEGGGCCCSCCSE
T ss_pred CEEEEECCcHHHHHHHHHHccc--CceeeeccchHHHHHHHHHHH------------hh--ccccchhhhccccccccce
Confidence 4799999999999999999987 789999999999998876521 00 1223333322223678999
Q ss_pred EEEeccCC
Q 017997 82 VFVSVNTP 89 (362)
Q Consensus 82 Vii~vptp 89 (362)
+|-|+|..
T Consensus 83 iIN~tp~g 90 (171)
T d1p77a1 83 VINATSAG 90 (171)
T ss_dssp EEECCCC-
T ss_pred eeeccccc
Confidence 99997643
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.67 E-value=0.0014 Score=52.67 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=49.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|+|+|.++.+++..|.+. |. ++++++|++++.+.+.+.. + ........ ..++|
T Consensus 18 ~~vlIlGaGGaarai~~aL~~~--g~~~I~I~nR~~~ka~~L~~~~-----------------~-~~~~~~~~--~~~~D 75 (167)
T d1npya1 18 AKVIVHGSGGMAKAVVAAFKNS--GFEKLKIYARNVKTGQYLAALY-----------------G-YAYINSLE--NQQAD 75 (167)
T ss_dssp SCEEEECSSTTHHHHHHHHHHT--TCCCEEEECSCHHHHHHHHHHH-----------------T-CEEESCCT--TCCCS
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCCEEEEecccHHHHHHHHHhh-----------------h-hhhhhccc--ccchh
Confidence 4799999999999999999998 75 7999999999998886420 1 12222222 36789
Q ss_pred EEEEeccC
Q 017997 81 IVFVSVNT 88 (362)
Q Consensus 81 vVii~vpt 88 (362)
+||=|+|-
T Consensus 76 liINaTpi 83 (167)
T d1npya1 76 ILVNVTSI 83 (167)
T ss_dssp EEEECSST
T ss_pred hheecccc
Confidence 99999764
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.64 E-value=0.00043 Score=56.06 Aligned_cols=67 Identities=12% Similarity=0.244 Sum_probs=38.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--CC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--EA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~a 79 (362)
+||+|||+|+||...+..|.+......+.++|.+..+ .... ..... ..++++.+. +.
T Consensus 8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~------------------~~~~~-~~~~~e~l~~~~i 66 (172)
T d1lc0a1 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGS------------------LDEVR-QISLEDALRSQEI 66 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCE------------------ETTEE-BCCHHHHHHCSSE
T ss_pred cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHH------------------hhccC-cCCHHHHHhCCCc
Confidence 5899999999999988887643101234444432111 0000 01233 235666654 67
Q ss_pred cEEEEeccCC
Q 017997 80 DIVFVSVNTP 89 (362)
Q Consensus 80 DvVii~vptp 89 (362)
|+|++|+|+.
T Consensus 67 D~V~I~tp~~ 76 (172)
T d1lc0a1 67 DVAYICSESS 76 (172)
T ss_dssp EEEEECSCGG
T ss_pred chhhhccccc
Confidence 8999997753
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.62 E-value=0.0014 Score=53.02 Aligned_cols=85 Identities=12% Similarity=0.173 Sum_probs=50.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHH-HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~~-~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
+||+|.|.|.+|..+++.+... +..+|+.+ |+++.. ...+..-..+.+....+..... ....+....+..+..+++
T Consensus 3 irIaINGfGRIGR~v~Ral~~~-~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v 80 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQ-DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRF-EKEGFEVAGTLNDLLEKV 80 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHH-HHHTCCCSCBHHHHHTTC
T ss_pred EEEEEECCCHHHHHHHHHHHhC-CCceEEEEecCCChHHHHHhhhcCceeecccccceeee-cccCccccchhhhhhccC
Confidence 6999999999999999988765 36777665 665433 2333332223321111111110 011233344566667899
Q ss_pred cEEEEeccC
Q 017997 80 DIVFVSVNT 88 (362)
Q Consensus 80 DvVii~vpt 88 (362)
|+|+.|+|.
T Consensus 81 DvViEcTG~ 89 (172)
T d2czca2 81 DIIVDATPG 89 (172)
T ss_dssp SEEEECCST
T ss_pred CEEEECCCC
Confidence 999999763
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=96.59 E-value=0.00067 Score=58.01 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=31.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
+||+|||+|..|+.+|..|+++ |++|+++|+++
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~--G~~v~v~Er~~ 37 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDA--GVDVDVYERSP 37 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCC
Confidence 6999999999999999999999 99999999864
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.49 E-value=0.0048 Score=49.10 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=34.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..+..+... |.+|+++|+++++++..++
T Consensus 30 ~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~ 69 (166)
T d1llua2 30 WVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARK 69 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhc
Confidence 799999999999766655555 8999999999999988776
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.48 E-value=0.0051 Score=49.49 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=33.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|...+..+... |. .|++.|+++++++..++
T Consensus 31 ~VlI~G~G~iG~~~~~~ak~~--g~~~v~~~~~~~~k~~~a~~ 71 (174)
T d1f8fa2 31 SFVTWGAGAVGLSALLAAKVC--GASIIIAVDIVESRLELAKQ 71 (174)
T ss_dssp EEEEESCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCHHHhhhhhccccc--ccceeeeeccHHHHHHHHHH
Confidence 699999999999888777666 55 66788999999988765
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.43 E-value=0.00023 Score=60.22 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=25.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV 31 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~ 31 (362)
|||+|||+|.+|+++|..|+++ |++|++
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~--G~~v~v 28 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHER--YHSVLQ 28 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--HTTTSS
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCCceE
Confidence 8999999999999999999999 876543
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.37 E-value=0.0044 Score=48.56 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=40.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKC--PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~--~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
|||+||| .||+|.-+...|.++. |..++..+..+.. .|..+..... ........+.. ..++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~------~gk~~~~~~~---------~~~~~~~~~~~-~~~~ 64 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQI------GVPAPNFGKD---------AGMLHDAFDIE-SLKQ 64 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCC------SSBCCCSSSC---------CCBCEETTCHH-HHTT
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccc------cccccccCCc---------ceeeecccchh-hhcc
Confidence 8999999 5999999998776531 2235555543311 1222211100 01112223433 3789
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
+|++|.|+|.
T Consensus 65 ~DvvF~alp~ 74 (147)
T d1mb4a1 65 LDAVITCQGG 74 (147)
T ss_dssp CSEEEECSCH
T ss_pred ccEEEEecCc
Confidence 9999999873
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.36 E-value=0.0016 Score=54.34 Aligned_cols=73 Identities=8% Similarity=0.051 Sum_probs=49.7
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCe--EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIE--VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~--V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
|++|.|.| .|++|..++..|+++ ||+ |+...|++++.+.+..+...+. +.+.-..+..++++
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~--g~~v~v~~~~R~~~~~~~~~~~~~~~~-------------~d~~~~~~~~~~~~ 67 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEG--SDKFVAKGLVRSAQGKEKIGGEADVFI-------------GDITDADSINPAFQ 67 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHT--TTTCEEEEEESCHHHHHHTTCCTTEEE-------------CCTTSHHHHHHHHT
T ss_pred CCEEEEECCccHHHHHHHHHHHHC--CCcEEEEEEcCCHHHHHhccCCcEEEE-------------eeeccccccccccc
Confidence 67999999 699999999999999 765 5666788888776654321111 00111123345678
Q ss_pred CCcEEEEeccC
Q 017997 78 EADIVFVSVNT 88 (362)
Q Consensus 78 ~aDvVii~vpt 88 (362)
++|.|+.+...
T Consensus 68 ~~d~vi~~a~~ 78 (252)
T d2q46a1 68 GIDALVILTSA 78 (252)
T ss_dssp TCSEEEECCCC
T ss_pred cceeeEEEEee
Confidence 99999988643
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.34 E-value=0.0018 Score=48.68 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=30.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.+|.|||.|++|.-+|..|++. |.+|+++++.+
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~--G~~Vtlve~~~ 55 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANF--GTKVTILEGAG 55 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSS
T ss_pred CeEEEECCCccceeeeeeeccc--ccEEEEEEecc
Confidence 4899999999999999999999 99999999864
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.33 E-value=0.0016 Score=53.02 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=30.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~ 37 (362)
.||+|||.|..|+..|..|++. |+ +|+++++++.
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~--G~~~V~v~E~~~~ 39 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARL--GYSDITIFEKQEY 39 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSS
T ss_pred CEEEEECChHHHHHHHHHHHHC--CCCeEEEEEecCc
Confidence 4899999999999999999999 88 5999998754
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.31 E-value=0.0011 Score=54.29 Aligned_cols=32 Identities=28% Similarity=0.659 Sum_probs=26.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
+||+|+| .||+|.-+.+.|.++ |.+++..+.-
T Consensus 6 ikVaIlGATGyvG~elirLL~~H-P~~ei~~l~S 38 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANH-PQFRIKVMTA 38 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-SSEEEEEEEC
T ss_pred cEEEEECcccHHHHHHHHHHHhC-CCceEEEEec
Confidence 5899999 599999999999987 6778777653
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.0085 Score=47.73 Aligned_cols=69 Identities=28% Similarity=0.422 Sum_probs=52.4
Q ss_pred ceEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|+|||-+. +|.|+|..|.+. |.+|+.++.. |.+..+.+++||
T Consensus 38 K~v~VIGrS~~VG~Pla~lL~~~--gatVt~~h~~---------------------------------t~~l~~~~~~AD 82 (166)
T d1b0aa1 38 LNAVVIGASNIVGRPMSMELLLA--GCTTTVTHRF---------------------------------TKNLRHHVENAD 82 (166)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTT--TCEEEEECSS---------------------------------CSCHHHHHHHCS
T ss_pred ceEEEEeccccccHHHHHHHHHh--hccccccccc---------------------------------cchhHHHHhhhh
Confidence 4799999766 999999999998 8999988753 123445578999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++-|--.. ...++++++|++
T Consensus 83 ivI~a~G~p~~i~--------------------~~~vk~g~vvID 107 (166)
T d1b0aa1 83 LLIVAVGKPGFIP--------------------GDWIKEGAIVID 107 (166)
T ss_dssp EEEECSCCTTCBC--------------------TTTSCTTCEEEE
T ss_pred HhhhhccCccccc--------------------ccccCCCcEEEe
Confidence 9999998663221 235688998886
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.01 Score=46.45 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=31.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRI 39 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~ 39 (362)
.|-|+|.|.+|..++..|.+. |++|+++|.++++.
T Consensus 5 HiII~G~g~~g~~l~~~L~~~--~~~v~vId~d~~~~ 39 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQR--GQNVTVISNLPEDD 39 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCEEEEeccchhH
Confidence 488999999999999999999 99999999998653
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.0015 Score=53.23 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=31.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.||+|||.|.-|+.-|..|+++ ||+|++||.+++
T Consensus 44 k~V~IIGaGPAGL~AA~~la~~--G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 44 KNLAVVGAGPAGLAFAINAAAR--GHQVTLFDAHSE 77 (179)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSS
T ss_pred cEEEEECccHHHHHHHHHHHhh--ccceEEEeccCc
Confidence 4899999999999999999999 999999998754
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.23 E-value=0.0024 Score=52.41 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=31.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|||.|||.|+.|..+|..|.+.+++.+|+++++++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 89999999999999999999886678999999753
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.23 E-value=0.009 Score=47.31 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=34.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD 45 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~ 45 (362)
+|.|+|+|.+|+..+..+... |.+|++++.++++++.+++-
T Consensus 30 ~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~~ 70 (168)
T d1rjwa2 30 WVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKEL 70 (168)
T ss_dssp EEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT
T ss_pred EEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhhc
Confidence 789999999998766555555 89999999999999988763
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.013 Score=46.80 Aligned_cols=70 Identities=19% Similarity=0.368 Sum_probs=53.4
Q ss_pred ceEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|||-+ .+|.|+|..|++. |..|+.++... .++.+-++++|
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~--gatVt~~~~~t---------------------------------~~l~~~~~~aD 84 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWN--NATVTTCHSKT---------------------------------AHLDEEVNKGD 84 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTTC---------------------------------SSHHHHHTTCS
T ss_pred ceEEEEecCCccchHHHHHHHhc--cCceEEEeccc---------------------------------ccHHHHHhhcc
Confidence 479999975 4999999999999 99999988631 23344578999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+++.+++.|--. . ...++++.+|++-
T Consensus 85 ivi~a~G~~~~i--------------~------~~~vk~g~iviDv 110 (170)
T d1a4ia1 85 ILVVATGQPEMV--------------K------GEWIKPGAIVIDC 110 (170)
T ss_dssp EEEECCCCTTCB--------------C------GGGSCTTCEEEEC
T ss_pred chhhcccccccc--------------c------cccccCCCeEecc
Confidence 999999866322 1 2457899998863
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=96.21 E-value=0.0039 Score=52.69 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=71.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh-hcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH-VSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~aD 80 (362)
++|+|-|.|.||..+|..|.+. |..|++.|.++..++.+.... + .... +.++. -.+||
T Consensus 40 ~~v~IqG~GnVG~~~a~~L~~~--Gakvv~~d~~~~~~~~~~~~~-----------------g-~~~~-~~~~~~~~~cD 98 (230)
T d1leha1 40 LAVSVQGLGNVAKALCKKLNTE--GAKLVVTDVNKAAVSAAVAEE-----------------G-ADAV-APNAIYGVTCD 98 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHH-----------------C-CEEC-CGGGTTTCCCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEeecccHHHHHHHHHhc-----------------C-Cccc-CCccccccccc
Confidence 4799999999999999999999 999999999999887765410 1 1222 22332 35899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
+++-|--.. ..+.+ .+. .++ -.+|+-....++.+.+ ..+.|.+. .+++.|.++.
T Consensus 99 Il~PcA~~~----------~I~~~----~~~----~l~-ak~Ive~ANn~~t~~e-a~~~L~~r------GI~~iPD~la 152 (230)
T d1leha1 99 IFAPCALGA----------VLNDF----TIP----QLK-AKVIAGSADNQLKDPR-HGKYLHEL------GIVYAPDYVI 152 (230)
T ss_dssp EEEECSCSC----------CBSTT----HHH----HCC-CSEECCSCSCCBSSHH-HHHHHHHH------TCEECCHHHH
T ss_pred Eeccccccc----------ccChH----Hhh----ccC-ccEEEecccCCCCCch-HHHHHHhh------CcEEEeehhh
Confidence 999985321 22222 122 233 3455443436775543 44556665 2567887753
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=96.19 E-value=0.0017 Score=55.83 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=29.5
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|.|||.|.+|+++|..|+++ |++|+++|+++
T Consensus 7 vvIIGaGi~Gls~A~~La~~--G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKE--NKNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence 99999999999999999999 99999999864
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.17 E-value=0.0022 Score=48.70 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.++.|||.|++|.-+|..|++. |.+|+++++++
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~l--G~~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRL--GSKVTVVEFQP 56 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CeEEEECCCchHHHHHHHHHhh--CcceeEEEecc
Confidence 4899999999999999999999 99999999854
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.17 E-value=0.0014 Score=56.93 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=31.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
+|.|||+|..|+.+|..|++. |++|+++|++++
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~--G~~v~vlE~~~~ 36 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTP 36 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCH
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCC
Confidence 699999999999999999999 999999999764
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.11 E-value=0.002 Score=54.10 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=31.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.||+|||.|.-|++.|..|++++.||+|++||..+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 489999999999999999987756899999998753
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.0025 Score=47.82 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.||.|||.|++|.-+|..|++. |++|+++++.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~--G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGL--GAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhcc--ccEEEEEeecc
Confidence 4899999999999999999998 99999999864
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=96.10 E-value=0.0024 Score=56.92 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=31.3
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|.||+|||+|.-|+.+|..|++.+.+++|++++++.
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 468999999999999999998874457999999974
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.09 E-value=0.0028 Score=48.00 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=31.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.+|.|||.|++|.-+|..|++. |++|+++++.+.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~--g~~Vtli~~~~~ 64 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTA--GVHVSLVETQPR 64 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred CeEEEECcchhHHHHHHHhhcc--cceEEEEeeccc
Confidence 4799999999999999999999 999999998653
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.02 E-value=0.0023 Score=54.72 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=30.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~ 36 (362)
|+|+|||.|..|+.+|..|++. | ++|+++++++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~--Gi~~V~V~Er~~ 35 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQA--GIGKVTLLESSS 35 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCeEEEEeCCC
Confidence 7999999999999999999999 8 5999999864
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.97 E-value=0.0028 Score=47.98 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=30.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.+|.|||.|++|.-+|..|++. |++|+++++++
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~--g~~Vtlv~~~~ 65 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEA--GYHVKLIHRGA 65 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHhhcc--cceEEEEeccc
Confidence 4799999999999999999999 99999999864
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.96 E-value=0.013 Score=47.11 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=34.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..++.+... | .+|++.|+++++++..++
T Consensus 30 ~VlV~GaGgvGl~a~~~ak~~--G~~~Vi~~d~~~~kl~~a~~ 70 (174)
T d1p0fa2 30 TCAVFGLGGVGFSAIVGCKAA--GASRIIGVGTHKDKFPKAIE 70 (174)
T ss_dssp EEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCCchhHHHHHHHHHc--CCceeeccCChHHHHHHHHH
Confidence 689999999999888777777 5 589999999999988776
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.95 E-value=0.0038 Score=47.35 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=30.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.+|.|||.|++|.-+|..|++. |++|+++++.+
T Consensus 31 k~vvViGgG~iG~E~A~~l~~~--g~~Vtlie~~~ 63 (123)
T d1nhpa2 31 NNVVVIGSGYIGIEAAEAFAKA--GKKVTVIDILD 63 (123)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSS
T ss_pred CEEEEECChHHHHHHHHHhhcc--ceEEEEEEecC
Confidence 4799999999999999999999 99999999864
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=95.94 E-value=0.018 Score=46.77 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=50.7
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEE--E--ecCHHhhhc
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF--F--STDVEKHVS 77 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~--~--t~d~~~a~~ 77 (362)
+|-|.| .|.+|..+|..|++. |.+|++++|++++.+.+.+. +.......... . .++.++++.
T Consensus 25 ~vlItGasgGIG~~ia~~la~~--G~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~~~~~d~~~~~~~~~~~~ 91 (191)
T d1luaa1 25 KAVVLAGTGPVGMRSAALLAGE--GAEVVLCGRKLDKAQAAADS-----------VNKRFKVNVTAAETADDASRAEAVK 91 (191)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHH-----------HHHHHTCCCEEEECCSHHHHHHHTT
T ss_pred EEEEECCCHHHHHHHHHHHHhh--ccchhhcccchHHHHHHHHH-----------HHhccchhhhhhhcccHHHHHHHhc
Confidence 577777 799999999999999 99999999999998876542 11110001111 1 123455678
Q ss_pred CCcEEEEeccC
Q 017997 78 EADIVFVSVNT 88 (362)
Q Consensus 78 ~aDvVii~vpt 88 (362)
++|++|-+.+-
T Consensus 92 ~iDilin~Ag~ 102 (191)
T d1luaa1 92 GAHFVFTAGAI 102 (191)
T ss_dssp TCSEEEECCCT
T ss_pred CcCeeeecCcc
Confidence 99999988653
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.93 E-value=0.0035 Score=47.53 Aligned_cols=32 Identities=28% Similarity=0.283 Sum_probs=29.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
.+++|||.|++|.-+|..|++. |.+|+++.++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~l--G~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGI--GLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhc--CCeEEEEEec
Confidence 4799999999999999999999 9999999875
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=95.93 E-value=0.0027 Score=55.52 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.||+|||.|..|++.|..|+++ |++|+++|.++
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~--G~~V~vlE~~~ 63 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGA--GHQVTVLEASE 63 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHH--TCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCC
Confidence 4899999999999999999999 99999999763
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.93 E-value=0.0029 Score=54.32 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=30.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
+||+|||.|.-|+..|..|+++ |++|+++|.+
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~--G~~V~vlE~~ 33 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIH--GLNVTVFEAE 33 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--SCEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCEEEEeCC
Confidence 6899999999999999999999 9999999975
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.91 E-value=0.0033 Score=55.77 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=30.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
+||+|||+|.-|++.|..|+++ |++|++++.+.
T Consensus 3 KKI~IIGaG~sGL~aA~~L~k~--G~~V~viEk~~ 35 (314)
T d2bi7a1 3 KKILIVGAGFSGAVIGRQLAEK--GHQVHIIDQRD 35 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCCEEEEECCC
Confidence 6999999999999999999998 99999999863
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.91 E-value=0.0095 Score=47.64 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=34.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD 45 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~ 45 (362)
+|.|+|+|.+|+..+..+...+ +..|+++|+++++.+.+++.
T Consensus 35 ~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~~ 76 (172)
T d1h2ba2 35 YVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAERL 76 (172)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHHT
T ss_pred EEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhhc
Confidence 5899999999998777666552 46889999999999988763
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.86 E-value=0.045 Score=46.48 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=35.1
Q ss_pred ceEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
+||++| | .+.+|..+|..|++. |++|++.|+++++++++.+
T Consensus 1 KKValITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~ 43 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKD--GFAVAIADYNDATAKAVAS 43 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 478777 5 567999999999999 9999999999998877653
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.85 E-value=0.021 Score=45.79 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=34.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~ 44 (362)
.|.|+|+|-+|+.....+... | .+|+++|+++++++..++
T Consensus 32 tVlI~G~GgvGl~ai~~ak~~--G~~~Vi~vd~~~~kl~~Ak~ 72 (176)
T d1d1ta2 32 TCVVFGLGGVGLSVIMGCKSA--GASRIIGIDLNKDKFEKAMA 72 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCCchhHHHHHHHHHc--CCceEEEecCcHHHHHHHHh
Confidence 589999999999887777776 6 589999999999997765
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.85 E-value=0.023 Score=45.37 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=36.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD 45 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~ 45 (362)
+|.|+|+|-+|+..+..++..+ +.+|++.|+++++.+..++.
T Consensus 31 tVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~ 72 (176)
T d2jhfa2 31 TCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEV 72 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT
T ss_pred EEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHh
Confidence 6899999999998888888772 46999999999999987763
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0027 Score=44.07 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=30.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
|++|+|+|.|-.|.-++..-.+- |++|..+|.+
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~L--G~~v~vldp~ 33 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPL--GIAVWPVGLD 33 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGG--TEEEEEECTT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHc--CCEEEEEcCC
Confidence 67999999999999999888887 9999999976
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=95.81 E-value=0.0017 Score=58.16 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=35.8
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
.+|.|.| .|++|+.++..|.++ ||+|++..|+.++.+.+..
T Consensus 12 k~VlVTG~sGfIGs~l~~~Ll~~--G~~V~~~vR~~~~~~~~~~ 53 (342)
T d1y1pa1 12 SLVLVTGANGFVASHVVEQLLEH--GYKVRGTARSASKLANLQK 53 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEeCCchhHHHHHH
Confidence 4799997 699999999999999 9999999999888776643
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=95.80 E-value=0.048 Score=46.35 Aligned_cols=40 Identities=8% Similarity=0.066 Sum_probs=35.0
Q ss_pred eEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI--GlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
||++| |.+.+|..+|..|++. |++|+++|+++++++++.+
T Consensus 3 KValITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~ 44 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKE--GLRVFVCARGEEGLRTTLK 44 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 78877 5678999999999999 9999999999998877653
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.78 E-value=0.035 Score=42.50 Aligned_cols=28 Identities=18% Similarity=0.451 Sum_probs=22.3
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEE
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAV 31 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~ 31 (362)
||+|+| .|.||..++..+.+. +++++.+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~-~~~~l~~ 29 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAA-DDLTLSA 29 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS-TTSEEEE
T ss_pred CEEEECCCCHHHHHHHHHHHhC-CCCEEEE
Confidence 799999 599999998887765 3677654
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.75 E-value=0.0053 Score=46.61 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.+|.|||.|++|.-+|..|++. |.+|+++++++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~--G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSAL--GSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcC--CcEEEEEeecc
Confidence 4799999999999999999999 99999999853
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.73 E-value=0.0062 Score=45.79 Aligned_cols=32 Identities=34% Similarity=0.344 Sum_probs=30.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
.+|.|||.|++|.-+|..|++. |.+|+++.+.
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~--G~~Vtiv~~~ 54 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARL--GAEVTVLEAM 54 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred CeEEEECCChHHHHHHHHHHHc--CCceEEEEee
Confidence 4899999999999999999999 9999999875
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.71 E-value=0.0033 Score=50.89 Aligned_cols=77 Identities=13% Similarity=0.196 Sum_probs=51.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|.|+|+|.++.+++..|.+. | +|++++|+.++.+.+.+.......... . ..+.+ .++......+|+
T Consensus 19 k~vlIlGaGG~arai~~aL~~~--~-~i~I~nR~~~ka~~l~~~~~~~~~~~~---~-----~~~~~-~~~~~~~~~~dl 86 (177)
T d1nvta1 19 KNIVIYGAGGAARAVAFELAKD--N-NIIIANRTVEKAEALAKEIAEKLNKKF---G-----EEVKF-SGLDVDLDGVDI 86 (177)
T ss_dssp CEEEEECCSHHHHHHHHHHTSS--S-EEEEECSSHHHHHHHHHHHHHHHTCCH---H-----HHEEE-ECTTCCCTTCCE
T ss_pred CEEEEECCcHHHHHHHHHHccc--c-ceeeehhhhhHHHHHHHHHHHhhchhh---h-----hhhhh-hhhhhccchhhh
Confidence 4799999999999999888765 5 999999999999877541000000000 0 01222 334444678999
Q ss_pred EEEeccCCC
Q 017997 82 VFVSVNTPT 90 (362)
Q Consensus 82 Vii~vptp~ 90 (362)
+|-|+|.+.
T Consensus 87 iIn~tp~g~ 95 (177)
T d1nvta1 87 IINATPIGM 95 (177)
T ss_dssp EEECSCTTC
T ss_pred hccCCcccc
Confidence 999987654
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=95.71 E-value=0.016 Score=49.99 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=30.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
+||.|.| .|++|..++..|.++ ||+|++++|++
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~--G~~V~~~~R~~ 37 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISL--GHPTYVLFRPE 37 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCC
Confidence 6899999 599999999999999 99999999863
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.015 Score=46.94 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=49.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe--cC---HHhhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS--TD---VEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t--~d---~~~a~ 76 (362)
.+|.|+|+|.+|.+++..|.+.+ ..++++++|++++++++.+- .+.+..........+ .+ ..+.+
T Consensus 19 k~vlIlGaGGaarai~~al~~~g-~~~i~i~nR~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEG-LKEIKLFNRRDEFFDKALAF---------AQRVNENTDCVVTVTDLADQQAFAEAL 88 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CSEEEEEECSSTTHHHHHHH---------HHHHHHHSSCEEEEEETTCHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHhhcC-CceEeeeccchHHHHHHHHH---------HHHHHhhcCcceEeeecccccchhhhh
Confidence 47999999999999999999983 34899999998776654320 000100001111211 12 33446
Q ss_pred cCCcEEEEeccCC
Q 017997 77 SEADIVFVSVNTP 89 (362)
Q Consensus 77 ~~aDvVii~vptp 89 (362)
..+|+||-|+|..
T Consensus 89 ~~~diiIN~Tp~G 101 (182)
T d1vi2a1 89 ASADILTNGTKVG 101 (182)
T ss_dssp HTCSEEEECSSTT
T ss_pred cccceeccccCCc
Confidence 7999999997643
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.69 E-value=0.004 Score=49.26 Aligned_cols=91 Identities=16% Similarity=0.306 Sum_probs=50.0
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 3 KICCIGA-GYVGGPTMAVIALKC-PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~-~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
||+|+|+ ||+|.-+.+.|+++. |-.++..+.-+.. .|. .+... ..........+....++|
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s------~G~-~~~~~----------~~~~~~~~~~~~~~~~~d 65 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS------AGK-SLKFK----------DQDITIEETTETAFEGVD 65 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGG------TTC-EEEET----------TEEEEEEECCTTTTTTCS
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccc------ccc-ccccc----------CCcccccccchhhhhhhh
Confidence 8999997 999999999888761 1224444443211 111 11000 011222223334477899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
++|.|.|.. ...+...+....+..||+.|.
T Consensus 66 ~~f~~~~~~------------------~s~~~~~~~~~~~~~VIDlSs 95 (154)
T d2gz1a1 66 IALFSAGSS------------------TSAKYAPYAVKAGVVVVDNTS 95 (154)
T ss_dssp EEEECSCHH------------------HHHHHHHHHHHTTCEEEECSS
T ss_pred hhhhccCcc------------------chhhHHhhhccccceehhcCh
Confidence 999997621 112222234456888888664
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.69 E-value=0.01 Score=45.07 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=47.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCC--CCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPI--YEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~--~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.|-|+|.|.+|..++..| + |++|.++|.++++++.+.+...++ .++...+.+++ .-+.+|+
T Consensus 2 HivI~G~g~~g~~l~~~L--~--~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~-------------a~i~~A~ 64 (129)
T d2fy8a1 2 HVVICGWSESTLECLREL--R--GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEK-------------ANVRGAR 64 (129)
T ss_dssp CEEEESCCHHHHHHHHTS--C--GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHH-------------TTCTTCS
T ss_pred EEEEECCCHHHHHHHHHH--c--CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHH-------------hhhhcCc
Confidence 578999999999999988 3 578999999999999887543322 12222222211 1257899
Q ss_pred EEEEecc
Q 017997 81 IVFVSVN 87 (362)
Q Consensus 81 vVii~vp 87 (362)
.++++.+
T Consensus 65 ~vi~~~~ 71 (129)
T d2fy8a1 65 AVIVNLE 71 (129)
T ss_dssp EEEECCS
T ss_pred EEEEecc
Confidence 9999965
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.68 E-value=0.041 Score=46.92 Aligned_cols=40 Identities=13% Similarity=0.305 Sum_probs=34.0
Q ss_pred eEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI--GlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| |.+.+|..+|..|++. |++|+++++++++++++.+
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~--G~~Vv~~~r~~~~l~~~~~ 52 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQ--GLKVVGCARTVGNIEELAA 52 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 45555 4689999999999999 9999999999998887653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.017 Score=45.88 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=32.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
.+|.|+|+|.+|+..+..+... |.+++++|.++++.+.+++
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~ 72 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA 72 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH
T ss_pred CEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhc
Confidence 3689999999998655544445 8999999999998877664
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.65 E-value=0.004 Score=52.00 Aligned_cols=33 Identities=15% Similarity=0.347 Sum_probs=29.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~ 36 (362)
.||+|||+|.-|++.|..|+++ |+ +|++++.++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~--G~~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEA--GITDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHT--TCCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhC--CCCcEEEEECCC
Confidence 3799999999999999999999 85 799999863
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=95.63 E-value=0.005 Score=47.31 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.+|.|||.|++|.-+|..|++. |++|+++++.+
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~--g~~Vtvie~~~ 68 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKA--NMHVTLLDTAA 68 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CEEEEECCchHHHHHHHHHHhh--Ccceeeeeecc
Confidence 4799999999999999999999 99999999864
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.61 E-value=0.0049 Score=46.01 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=30.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.++.|||.|++|.-+|..|++. |++|+++++.+
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~--g~~Vtlve~~~ 54 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKL--GAQVSVVEARE 54 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhc--ccceEEEeeec
Confidence 4899999999999999999999 99999998853
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.075 Score=44.83 Aligned_cols=84 Identities=18% Similarity=0.126 Sum_probs=56.7
Q ss_pred eEEEE-cC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 3 KICCI-GA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 3 kI~VI-Gl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+++| |+ +-+|..+|..|+++ |.+|+++|+++++++.+.+. ..+ ....
T Consensus 8 kv~lITGas~GIG~~ia~~la~~--G~~V~l~~r~~~~l~~~~~~--------------------------~~~--~~~~ 57 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAK--------------------------CKG--LGAK 57 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH--------------------------HHH--TTCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHH--------------------------HHh--cCCc
Confidence 45555 64 56999999999999 99999999999998877541 011 1234
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
+..+.+ . --|.+.+.+.++.+.+...+=.++++...
T Consensus 58 ~~~~~~--D----------vs~~~~v~~~~~~i~~~~g~idilinnag 93 (244)
T d1yb1a_ 58 VHTFVV--D----------CSNREDIYSSAKKVKAEIGDVSILVNNAG 93 (244)
T ss_dssp EEEEEC--C----------TTCHHHHHHHHHHHHHHTCCCSEEEECCC
T ss_pred EEEEEe--e----------CCCHHHHHHHHHHHHHHcCCCceeEeecc
Confidence 444442 1 12345677788888776666666666444
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.60 E-value=0.0039 Score=47.23 Aligned_cols=33 Identities=36% Similarity=0.487 Sum_probs=30.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.++.|||.|++|+-+|..|++. |.+|+++.+++
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~--G~~Vtvi~~~~ 58 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRI--GSEVTVVEFAS 58 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHH--TCEEEEECSSS
T ss_pred CeEEEEccchHHHHHHHHHHhc--CCeEEEEEEcc
Confidence 4799999999999999999999 99999998864
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=95.53 E-value=0.0046 Score=53.94 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=29.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~ 35 (362)
.+|.|||.|.+|+++|..|++. |. +|+++|++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~--G~~~V~liE~~ 34 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTR--GWNNITVLDQG 34 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCCEEEECSS
T ss_pred CCEEEECcCHHHHHHHHHHHHc--CCCcEEEEeCC
Confidence 3799999999999999999998 74 79999986
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=95.53 E-value=0.055 Score=46.80 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=34.7
Q ss_pred eEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VI--GlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
|++|| |.|.+|..+|..|++. |++|++.|++.+++++..
T Consensus 26 K~alITGas~GIG~aiA~~la~~--Ga~Vii~~r~~~~l~~~~ 66 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSL--GAQCVIASRKMDVLKATA 66 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHH
Confidence 77777 6899999999999999 999999999998877654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=95.53 E-value=0.052 Score=46.24 Aligned_cols=40 Identities=23% Similarity=0.388 Sum_probs=33.4
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| | .+.+|..+|..|++. |++|++.|++++++++..+
T Consensus 5 K~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~ 46 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAE--GAKLSLVDVSSEGLEASKA 46 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 45555 5 567999999999999 9999999999998876543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.50 E-value=0.016 Score=45.97 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=34.2
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+ |.+|...+..+... | .+|+++|+++++.+.+++
T Consensus 30 ~vlV~G~~G~vG~~~~~~~~~~--g~~~V~~~~~~~~~~~~~~~ 71 (170)
T d1jvba2 30 TLLVVGAGGGLGTMAVQIAKAV--SGATIIGVDVREEAVEAAKR 71 (170)
T ss_dssp EEEEETTTSHHHHHHHHHHHHH--TCCEEEEEESSHHHHHHHHH
T ss_pred EEEEEeccccceeeeeeccccc--ccccccccccchhhHHHHHH
Confidence 6899995 99999877777766 5 699999999999998775
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.50 E-value=0.03 Score=41.73 Aligned_cols=96 Identities=20% Similarity=0.217 Sum_probs=63.8
Q ss_pred ceEEEEcC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
++|+|||+ |..|..+...|.+. ||+|+.++.+.+.+ .++.+..++.+.-.
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~--g~~V~pVnP~~~~i------------------------~G~~~y~sl~~lp~ 55 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSK--GFEVLPVNPNYDEI------------------------EGLKCYRSVRELPK 55 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT--TCEEEEECTTCSEE------------------------TTEECBSSGGGSCT
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHC--CCEEEEEccccccc------------------------cCccccccchhccc
Confidence 57999994 68899999999998 99988886542211 13566677777556
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc-HHHHHHHHHhc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT-AEAIEKILTHN 144 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt-~~~l~~~l~~~ 144 (362)
..|++++++|. +.+.+++++..+. ....+++ .+|+ .+.+.+.+++.
T Consensus 56 ~~D~vvi~vp~---------------~~~~~~l~~~~~~-g~k~v~~-----~~g~~~~~~~~~a~~~ 102 (116)
T d1y81a1 56 DVDVIVFVVPP---------------KVGLQVAKEAVEA-GFKKLWF-----QPGAESEEIRRFLEKA 102 (116)
T ss_dssp TCCEEEECSCH---------------HHHHHHHHHHHHT-TCCEEEE-----CTTSCCHHHHHHHHHH
T ss_pred cceEEEEEeCH---------------HHHHHHHHHHHhc-CCceEEe-----ccchhhHHHHHHHHHc
Confidence 77999999873 2355666666553 2333433 2333 35666666665
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.0046 Score=54.30 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=31.0
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
|.+|.|||+|.-|++.|..|+++ |++|++++.+
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~--g~~V~iiEk~ 33 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKL--NKKVLVIEKR 33 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGG--TCCEEEECSS
T ss_pred CccEEEECCcHHHHHHHHHHHhC--CCcEEEEECC
Confidence 67899999999999999999998 9999999975
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.43 E-value=0.083 Score=42.06 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=33.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSD 45 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~ 45 (362)
+|.|+|+|.+|+..+..+... |. +|++.|+++++.+..++-
T Consensus 31 ~VlV~G~G~iGl~a~~~ak~~--Ga~~Vi~~d~~~~r~~~a~~~ 72 (174)
T d1e3ia2 31 TCAVFGLGCVGLSAIIGCKIA--GASRIIAIDINGEKFPKAKAL 72 (174)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHT
T ss_pred EEEEECCChHHHHHHHHHHHh--CCceeeeeccchHHHHHHHHh
Confidence 689999999999777666666 65 788999999999877763
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.0072 Score=44.92 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=30.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.||+|+|.|-.|..+|....+. |++|+++|.++
T Consensus 12 ~kigIlGgGQL~rMla~aA~~l--G~~v~v~d~~~ 44 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRL--GVEVIAVDRYA 44 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTT--TCEEEEEESST
T ss_pred CEEEEEeCCHHHHHHHHHHHHC--CCEEEEEcCCC
Confidence 4899999999999999988887 99999999874
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.36 E-value=0.023 Score=46.49 Aligned_cols=41 Identities=27% Similarity=0.275 Sum_probs=32.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..+..+...+ ..+|+++|.++++++..++
T Consensus 28 tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~ 68 (195)
T d1kola2 28 TVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA 68 (195)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhh
Confidence 6899999999976665554442 4589999999999998776
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.34 E-value=0.03 Score=48.92 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=33.3
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| | .+.+|..+|..|++. |++|++.|++++++++..+
T Consensus 13 KvalITGas~GIG~aia~~la~~--Ga~Vvi~~r~~~~l~~~~~ 54 (297)
T d1yxma1 13 QVAIVTGGATGIGKAIVKELLEL--GSNVVIASRKLERLKSAAD 54 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 45555 5 577999999999999 9999999999998876543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.34 E-value=0.065 Score=45.37 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=34.3
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
||++| | .+-+|..+|..|++. |++|+++|++++.++++.+
T Consensus 11 KvalITGas~GIG~a~a~~la~~--Ga~V~~~~r~~~~l~~~~~ 52 (251)
T d2c07a1 11 KVALVTGAGRGIGREIAKMLAKS--VSHVICISRTQKSCDSVVD 52 (251)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTT--SSEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHH
Confidence 67766 5 578999999999999 9999999999998877653
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.33 E-value=0.05 Score=46.19 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=33.8
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| | .+.+|..+|..|++. |++|++.|++++++++..+
T Consensus 4 KvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~ 45 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKA 45 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 56666 5 578999999999999 9999999999998876653
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.32 E-value=0.0076 Score=48.06 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=34.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
.+|.|+|+|.+|+..+..+... |.+|+++|+++++++..++
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~ 69 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK 69 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH
T ss_pred CEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhc
Confidence 3799999999998766655555 8999999999999988765
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=95.29 E-value=0.0077 Score=45.13 Aligned_cols=33 Identities=3% Similarity=-0.014 Sum_probs=30.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.+|+|||.|++|.-+|..|++. |.+|+++++.+
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~--g~~vt~i~~~~ 55 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNAT--GRRTVMLVRTE 55 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSC
T ss_pred CEEEEECCCHHHHHHHHHHHhc--chhheEeeccc
Confidence 4799999999999999999998 99999999864
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=95.28 E-value=0.0076 Score=47.74 Aligned_cols=35 Identities=31% Similarity=0.504 Sum_probs=30.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
+||.|||.|+.|..+|..|.+.++..+|+++++++
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 58999999999999999999984446899998765
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=95.25 E-value=0.087 Score=44.77 Aligned_cols=40 Identities=23% Similarity=0.466 Sum_probs=33.3
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| | .+.+|..+|..|++. |++|++.|++++.++++.+
T Consensus 6 K~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~ 47 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEE--GTAIALLDMNREALEKAEA 47 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 44544 6 477999999999999 9999999999998877653
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.19 E-value=0.0076 Score=49.78 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=29.2
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|.|||.|.-|+..|..|+++ |++|++++.++
T Consensus 8 viViGaG~~Gl~~A~~La~~--G~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVD--GKKVLHIDKQD 38 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC--CCCEEEEcCCC
Confidence 89999999999999999999 99999999863
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=95.17 E-value=0.086 Score=44.57 Aligned_cols=40 Identities=13% Similarity=0.044 Sum_probs=34.1
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| | .+.+|..+|..|++. |++|++.|+++++++.+.+
T Consensus 7 K~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~ 48 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEE--GAKVMITGRHSDVGEKAAK 48 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 56666 4 688999999999999 9999999999998877654
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=95.13 E-value=0.016 Score=51.30 Aligned_cols=39 Identities=21% Similarity=0.418 Sum_probs=32.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAW 42 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l 42 (362)
|||.|.| .|++|..++..|.++ || +|+++|+.......+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~--g~~~V~~ld~~~~~~~~~ 41 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLRE--DHYEVYGLDIGSDAISRF 41 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHS--TTCEEEEEESCCGGGGGG
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCCEEEEEeCCCcchhhh
Confidence 7999998 699999999999988 74 899999875544433
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.08 E-value=0.0086 Score=51.92 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=29.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
.||+|||+|.-|++.|..|+++ |++|++++.+
T Consensus 6 ~kViVIGaG~aGL~aA~~L~~~--G~~V~VlEa~ 37 (449)
T d2dw4a2 6 GKVIIIGSGVSGLAAARQLQSF--GMDVTLLEAR 37 (449)
T ss_dssp CEEEEECCBHHHHHHHHHHHHT--TCEEEEECSS
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCC
Confidence 3799999999999999999999 9999999875
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.07 E-value=0.083 Score=44.71 Aligned_cols=39 Identities=13% Similarity=0.086 Sum_probs=32.3
Q ss_pred eEEE-Ec-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICC-IG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~V-IG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
|+++ -| .+.+|..+|..|++. |++|++.|++++++++..
T Consensus 6 K~~lITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~ 46 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAA 46 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 4444 45 577999999999999 999999999998877654
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=95.05 E-value=0.15 Score=40.09 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=35.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..+..++..+ +.+|++.|+++++++..++
T Consensus 31 ~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~ 71 (175)
T d1cdoa2 31 TCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV 71 (175)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH
T ss_pred EEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHH
Confidence 6899999999998888877763 5689999999999998776
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=95.04 E-value=0.0063 Score=52.13 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=30.2
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
|||-|.|. |++|..++..|.++ ||+|+++|++
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~--g~~Vi~~~r~ 34 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGK--NVEVIPTDVQ 34 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTS--SEEEEEECTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEeech
Confidence 89999996 99999999999998 9999999985
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=95.00 E-value=0.0096 Score=45.18 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=30.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.++.|||.|++|.-+|..|++. |.+|+++++.+
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~--G~~Vtive~~~ 59 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTL--GSRLDVVEMMD 59 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHhhcC--CCEEEEEEeec
Confidence 4799999999999999999999 99999998753
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=94.97 E-value=0.099 Score=43.96 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=34.3
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| | .+.+|..+|..|++. |++|++.|+++++++++.+
T Consensus 5 K~alITGas~GIG~a~a~~l~~~--G~~Vv~~~r~~~~l~~~~~ 46 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAAR--GAKVIGTATSENGAQAISD 46 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence 56666 5 678999999999999 9999999999998887654
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.96 E-value=0.096 Score=44.13 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=34.0
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| | .+.+|..+|..|++. |++|++.|+++++++.+.+
T Consensus 7 K~alITGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~ 48 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAE--GAKVVFGDILDEEGKAMAA 48 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 55555 5 577999999999999 9999999999998877654
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=94.96 E-value=0.13 Score=43.68 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=33.3
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| | .+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 9 K~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~ 50 (259)
T d2ae2a_ 9 CTALVTGGSRGIGYGIVEELASL--GASVYTCSRNQKELNDCLT 50 (259)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 45555 5 567999999999999 9999999999998877643
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.93 E-value=0.11 Score=44.05 Aligned_cols=40 Identities=23% Similarity=0.201 Sum_probs=34.5
Q ss_pred eEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI--GlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| |.+.+|..+|..|++. |++|++.|+++++++++.+
T Consensus 12 K~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~ 53 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATA--GASVVVSDINADAANHVVD 53 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 56766 5688999999999999 9999999999998877653
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=94.88 E-value=0.01 Score=50.98 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=28.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
-|.|||.|.+|+++|..|+++ |++|+++|+.
T Consensus 5 DvvIIGaGi~Gls~A~~La~~--G~~V~viE~~ 35 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAF 35 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCcEEEEeCC
Confidence 389999999999999999999 9999999974
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=94.84 E-value=0.17 Score=42.86 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=33.9
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++-|.| .+.+|..+|..|++. |++|++.++++++++++.+
T Consensus 8 ~alITGas~GIG~aia~~la~~--G~~V~i~~r~~~~l~~~~~ 48 (258)
T d1ae1a_ 8 TALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECLE 48 (258)
T ss_dssp EEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 455666 688999999999999 9999999999988876543
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.83 E-value=0.081 Score=45.05 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=35.2
Q ss_pred eEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI--GlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| |.+-+|..+|..|++. |++|++.||++++++++.+
T Consensus 6 KvalVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~ 47 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFARE--GAKVTITGRHAERLEETRQ 47 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 67777 5789999999999999 9999999999998887654
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.72 E-value=0.011 Score=49.70 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=31.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.+|.|||.|.-|+..|..|++. |++|++++.+++
T Consensus 50 k~VvIIGaGpAGl~aA~~l~~~--G~~v~l~E~~~~ 83 (233)
T d1djqa3 50 DSVLIVGAGPSGSEAARVLMES--GYTVHLTDTAEK 83 (233)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSS
T ss_pred ceEEEEcccHHHHHHHHHHHHh--ccceeeEeeccc
Confidence 4899999999999999999999 999999998753
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=94.72 E-value=0.13 Score=43.72 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=34.1
Q ss_pred eEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI--GlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| |.+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 7 KvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~ 48 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRY--GAKVVIADIADDHGQKVCN 48 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 55666 4678999999999999 9999999999998887654
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.017 Score=49.07 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=35.8
Q ss_pred eEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI--GlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| |.+.+|..+|..|++. |++|++.|+++++++.+.+
T Consensus 7 K~alITGas~GIG~aia~~la~~--G~~Vi~~~r~~~~l~~~~~ 48 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFARE--GAKVIATDINESKLQELEK 48 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHGGGGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh
Confidence 67777 6899999999999999 9999999999998887765
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.62 E-value=0.14 Score=43.27 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=33.7
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| | .+.+|..+|..|++. |++|++.|+++++++++.+
T Consensus 7 K~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~ 48 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNS--GARVVICDKDESGGRALEQ 48 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 44444 5 589999999999999 9999999999998887654
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=94.60 E-value=0.11 Score=43.85 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=33.9
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| | .+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 7 K~alITGas~GIG~aia~~la~~--Ga~V~~~~~~~~~~~~~~~ 48 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGE--GAKVAFSDINEAAGQQLAA 48 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 55666 5 577999999999999 9999999999998877654
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.59 E-value=0.0084 Score=45.61 Aligned_cols=36 Identities=19% Similarity=0.438 Sum_probs=28.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRI 39 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~ 39 (362)
+|.|+|+|.+|..++..+... .+++++++ |-|+++.
T Consensus 5 ~v~I~GaG~~G~~l~~~l~~~-~~~~iv~fiDdd~~k~ 41 (126)
T d2dt5a2 5 GLCIVGMGRLGSALADYPGFG-ESFELRGFFDVDPEKV 41 (126)
T ss_dssp EEEEECCSHHHHHHHHCSCCC-SSEEEEEEEESCTTTT
T ss_pred eEEEEcCCHHHHHHHHhHhhc-CCcEEEEEEeCchHhc
Confidence 799999999999998876543 27887765 8887654
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.56 E-value=0.0091 Score=49.77 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=30.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-------CeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-------IEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-------~~V~~~d~~~~ 37 (362)
.||+|||+|.-|++.|..|+++ | ++|++||.++.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~--G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKA--ADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH--HHHSTTCCEEEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHc--CCccccCCCceEEEecCCC
Confidence 5899999999999999999998 6 58999998754
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=94.55 E-value=0.016 Score=51.31 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=29.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
|||.|+| .|++|..++..|++. ||+|+++|+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~--g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQN--GHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEEC
Confidence 8999997 699999999999999 999999986
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.54 E-value=0.15 Score=43.04 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=34.0
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| | .+.+|..+|..|++. |++|++.|+++++++.+.+
T Consensus 6 K~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~ 47 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVRE--GARVAIADINLEAARATAA 47 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHT--TEEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 56655 5 589999999999999 9999999999988876653
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.51 E-value=0.033 Score=43.26 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=28.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
++|-|||.|.+|..-+..|.+. |-+|++++.
T Consensus 14 krvLViGgG~va~~ka~~Ll~~--GA~VtVvap 44 (150)
T d1kyqa1 14 KRILLIGGGEVGLTRLYKLMPT--GCKLTLVSP 44 (150)
T ss_dssp CEEEEEEESHHHHHHHHHHGGG--TCEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeC
Confidence 4799999999999999999999 899999954
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.50 E-value=0.014 Score=51.07 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=29.0
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|+|||+|.-|++.|..|+++ |++|++++.+.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~--G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDS--GLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhC--CCCEEEEecCC
Confidence 89999999999999999999 99999999753
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.48 E-value=0.1 Score=44.59 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=34.0
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| | .+.+|..+|..|++. |++|++.|+++++++++.+
T Consensus 6 K~alVTGas~GIG~aia~~la~~--Ga~V~l~~r~~~~l~~~~~ 47 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQE--GANVTITGRSSERLEETRQ 47 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 55555 4 688999999999999 9999999999998887654
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.47 E-value=0.081 Score=40.59 Aligned_cols=97 Identities=11% Similarity=-0.004 Sum_probs=63.8
Q ss_pred ceEEEEcC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
.+|+|||+ +..|..++..|.+. ||+|+.++.....+ .......++.+.-.
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~--g~~v~pVnP~~~~i------------------------~G~~~~~sl~dlp~ 73 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEH--GYDVYPVNPKYEEV------------------------LGRKCYPSVLDIPD 73 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT--TCEEEEECTTCSEE------------------------TTEECBSSGGGCSS
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHC--CCEEEEECCccccc------------------------CCCcccccccccCc
Confidence 47999996 57999999999998 99998887642111 13556677777556
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
..|++++++|. +.+.++++++.+. ....+++. +.+..+.+.+.+++.
T Consensus 74 ~iD~v~i~vp~---------------~~~~~~~~e~~~~-g~k~v~~~----~G~~~ee~~~~a~~~ 120 (139)
T d2d59a1 74 KIEVVDLFVKP---------------KLTMEYVEQAIKK-GAKVVWFQ----YNTYNREASKKADEA 120 (139)
T ss_dssp CCSEEEECSCH---------------HHHHHHHHHHHHH-TCSEEEEC----TTCCCHHHHHHHHHT
T ss_pred cceEEEEEeCH---------------HHHHHHHHHHHHh-CCCEEEEe----ccccCHHHHHHHHHC
Confidence 89999999873 2456777776654 33334332 223335555555553
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=94.40 E-value=0.18 Score=42.14 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=32.2
Q ss_pred EEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 4 ICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 4 I~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
+-|.| .+.+|..+|..|+++ |++|++.+++.++++++.+
T Consensus 8 alItGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~ 47 (241)
T d2a4ka1 8 ILVTGAASGIGRAALDLFARE--GASLVAVDREERLLAEAVA 47 (241)
T ss_dssp EEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 34446 566999999999999 9999999999988776544
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.38 E-value=0.035 Score=42.13 Aligned_cols=87 Identities=15% Similarity=0.139 Sum_probs=59.4
Q ss_pred ceEEEEcC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
.+|+|||+ |.+|..+..+|.+.+ .++|+.+....+.+ .+.....++.+.-.
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~~i------------------------~G~~~y~sl~dlp~ 63 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEEEV------------------------QGVKAYKSVKDIPD 63 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCSEE------------------------TTEECBSSTTSCSS
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCcccc------------------------CCeEeecchhhcCC
Confidence 47999997 899999999887652 36898887653221 13566677777556
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCC
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv 129 (362)
..|++++++|. +.+.+++++..+. .-..+++..+.+
T Consensus 64 ~vDlvvi~vp~---------------~~~~~~~~~~~~~-g~~~~vi~s~Gf 99 (129)
T d2csua1 64 EIDLAIIVVPK---------------RFVKDTLIQCGEK-GVKGVVIITAGF 99 (129)
T ss_dssp CCSEEEECSCH---------------HHHHHHHHHHHHH-TCCEEEECCCSS
T ss_pred CCceEEEecCh---------------HHhHHHHHHHHHc-CCCEEEEecccc
Confidence 78999999873 2456677776654 334456655543
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.31 E-value=0.02 Score=51.07 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=30.0
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
|||.|.| .|++|..++..|.++ ||+|+++|+.
T Consensus 16 MKILVTGgsGfIGs~lv~~L~~~--g~~V~~~d~~ 48 (363)
T d2c5aa1 16 LKISITGAGGFIASHIARRLKHE--GHYVIASDWK 48 (363)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEeCC
Confidence 8999998 799999999999999 9999999974
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.15 E-value=0.24 Score=41.81 Aligned_cols=40 Identities=15% Similarity=0.080 Sum_probs=33.4
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| | .+-+|..+|..|++. |++|+++|+++++++++.+
T Consensus 9 K~alVTGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~l~~~~~ 50 (259)
T d1xq1a_ 9 KTVLVTGGTKGIGHAIVEEFAGF--GAVIHTCARNEYELNECLS 50 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 45555 4 677999999999999 9999999999998877653
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=94.12 E-value=0.015 Score=50.92 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=30.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.|+|||+|.-|+.+|..|.+. |++|+++|.+++
T Consensus 9 dV~IIGAG~sGl~~a~~L~~~--G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 9 DVLVVGAGFSGLYALYRLREL--GRSVHVIETAGD 41 (298)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSS
T ss_pred CEEEECccHHHHHHHHHHHhC--CCCEEEEEcCCC
Confidence 699999999999999999998 999999998754
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=94.06 E-value=0.16 Score=42.92 Aligned_cols=39 Identities=10% Similarity=0.227 Sum_probs=31.9
Q ss_pred eEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCC-HHHHHHHH
Q 017997 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDIS-VSRINAWN 43 (362)
Q Consensus 3 kI~VI--GlG~~G~~lA~~la~~~~G~~V~~~d~~-~~~~~~l~ 43 (362)
|+++| |.+.+|..+|..|++. |++|++.+++ ++.++++.
T Consensus 5 K~alITGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~~~~~~~ 46 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQ--GADIVLNGFGDAAEIEKVR 46 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT--TCEEEEECCSCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCcHHHHHHHH
Confidence 57777 5677999999999999 9999999996 56666544
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.00 E-value=0.068 Score=42.24 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=32.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..++.+... | ..|++.|+++++.+..++
T Consensus 31 tVlI~GaGGvG~~aiq~ak~~--G~~~vi~~~~~~~k~~~ak~ 71 (176)
T d2fzwa2 31 VCAVFGLGGVGLAVIMGCKVA--GASRIIGVDINKDKFARAKE 71 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEecchhHHHHHHHHHHHH--hcCceEEEcccHHHHHHHHH
Confidence 689999999998776666666 6 578999999999887765
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.00 E-value=0.016 Score=44.47 Aligned_cols=98 Identities=12% Similarity=0.138 Sum_probs=58.5
Q ss_pred ceEEEEcCCh----------hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecC
Q 017997 2 VKICCIGAGY----------VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTD 71 (362)
Q Consensus 2 mkI~VIGlG~----------~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (362)
.||+|+|+-| -...++..|.+. |.+|.+||..-...+..+. ..+.........+....++
T Consensus 14 kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~--g~~V~~~DP~v~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 83 (136)
T d1mv8a3 14 RKVGLLGLSFKAGTDDLRESPLVELAEMLIGK--GYELRIFDRNVEYARVHGA--------NKEYIESKIPHVSSLLVSD 83 (136)
T ss_dssp CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT--TCEEEEECHHHHHHTTSSS--------CHHHHHHTSHHHHTTBCSC
T ss_pred CEEEEEEEEECCCCcchhcCHHHHHHHHHhhh--hccccccCCCCCHHHHhhh--------hhhhhhhccccccceeehh
Confidence 4789999865 566788999988 9999999963222110000 0000000000011235678
Q ss_pred HHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 72 ~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
+.++++++|+||++++-+ + ++.+...+.++.+|++.-.
T Consensus 84 ~~e~i~~~D~ivi~t~h~------------~-------f~~l~~~~~~~~~I~D~~~ 121 (136)
T d1mv8a3 84 LDEVVASSDVLVLGNGDE------------L-------FVDLVNKTPSGKKLVDLVG 121 (136)
T ss_dssp HHHHHHHCSEEEECSCCG------------G-------GHHHHHSCCTTCEEEESSS
T ss_pred hhhhhhhceEEEEEeCCH------------H-------HHHHHHHhcCCCEEEECCC
Confidence 889999999999997632 1 1234445667788887433
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=93.96 E-value=0.022 Score=47.77 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=30.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.|.|||.|..|+..|..|+++ |++|+++|+++.
T Consensus 4 DViIIGaG~aGl~aA~~la~~--G~~V~liEk~~~ 36 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEE--GANVLLLDKGNK 36 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCC
Confidence 489999999999999999999 999999998753
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.88 E-value=0.17 Score=43.17 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=35.7
Q ss_pred ceEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VI--GlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+|+|| |.+-+|..+|..|++.+ |++|++++|++++.++..+
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~-g~~Vi~~~r~~~~~~~~~~ 46 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLF-SGDVVLTARDVTRGQAAVQ 46 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHS-SSEEEEEESSHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH
Confidence 689988 78899999999999742 7999999999998876543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=0.04 Score=46.53 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=34.0
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++-|.| .+.+|..+|..|++. |++|++.|+++++++++.+
T Consensus 9 ~~lITGas~GIG~aia~~la~~--G~~V~~~~r~~~~l~~~~~ 49 (244)
T d1pr9a_ 9 RVLVTGAGKGIGRGTVQALHAT--GARVVAVSRTQADLDSLVR 49 (244)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHH
Confidence 344556 578999999999999 9999999999999887764
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=93.84 E-value=0.16 Score=42.94 Aligned_cols=110 Identities=11% Similarity=0.076 Sum_probs=66.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh--cCCc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV--SEAD 80 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~--~~aD 80 (362)
+|-=+|||.=. ++..+++. |.+|+++|+|++.++..++.. +......-....|..+.. ...|
T Consensus 123 ~VLDiGcGsG~--l~i~aa~~--g~~V~gvDis~~av~~A~~na------------~~n~~~~~~~~~d~~~~~~~~~fD 186 (254)
T d2nxca1 123 KVLDLGTGSGV--LAIAAEKL--GGKALGVDIDPMVLPQAEANA------------KRNGVRPRFLEGSLEAALPFGPFD 186 (254)
T ss_dssp EEEEETCTTSH--HHHHHHHT--TCEEEEEESCGGGHHHHHHHH------------HHTTCCCEEEESCHHHHGGGCCEE
T ss_pred EEEEcccchhH--HHHHHHhc--CCEEEEEECChHHHHHHHHHH------------HHcCCceeEEeccccccccccccc
Confidence 56668999743 45566777 889999999999988766420 000001112334444333 4678
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
+|+..... ..+.+.++.+.+.++|+..++. |.+.....+.+.+.+++.
T Consensus 187 ~V~ani~~---------------~~l~~l~~~~~~~LkpGG~lil-Sgil~~~~~~v~~~~~~~ 234 (254)
T d2nxca1 187 LLVANLYA---------------ELHAALAPRYREALVPGGRALL-TGILKDRAPLVREAMAGA 234 (254)
T ss_dssp EEEEECCH---------------HHHHHHHHHHHHHEEEEEEEEE-EEEEGGGHHHHHHHHHHT
T ss_pred hhhhcccc---------------ccHHHHHHHHHHhcCCCcEEEE-EecchhhHHHHHHHHHHC
Confidence 88765321 2456778888899999877765 444334445566666554
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=93.78 E-value=0.23 Score=41.85 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=33.2
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++-|.| .+.+|..+|..|++. |++|++.|+++++++++.+
T Consensus 7 ~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~ 47 (254)
T d1hdca_ 7 TVIITGGARGLGAEAARQAVAA--GARVVLADVLDEEGAATAR 47 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 344556 467999999999999 9999999999998877654
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=93.77 E-value=0.025 Score=48.32 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=30.4
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
+||.|+|+ |++|..++..|.++ ||+|++++|++
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~--G~~V~~l~R~~ 37 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDL--GHPTFLLVRES 37 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCeEEEEECCC
Confidence 68999995 99999999999999 99999999864
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=93.77 E-value=0.15 Score=44.20 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=75.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhh----
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---- 76 (362)
.+|.|||+|--|. +..+.+..+..+|+++|+|++.++..++- .+.. .. .....+++. ..|..+-+
T Consensus 91 k~VLiiGgG~G~~--~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~-~~~~----~~---~~~d~rv~v~~~Da~~~l~~~~ 160 (295)
T d1inla_ 91 KKVLIIGGGDGGT--LREVLKHDSVEKAILCEVDGLVIEAARKY-LKQT----SC---GFDDPRAEIVIANGAEYVRKFK 160 (295)
T ss_dssp CEEEEEECTTCHH--HHHHTTSTTCSEEEEEESCHHHHHHHHHH-CHHH----HG---GGGCTTEEEEESCHHHHGGGCS
T ss_pred ceEEEecCCchHH--HHHHHhcCCCceEEEecCCHHHHHHHHHH-HHhh----cc---cccCCCcEEEhhhHHHHHhcCC
Confidence 4899999998764 55666653356899999999999876541 1100 00 011234432 34443333
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH---HHHHHHHhccCCCceEEe
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE---AIEKILTHNSKGIKFQIL 153 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~---~l~~~l~~~~~g~~~~v~ 153 (362)
+..|+||+-.+.|.... ...+ +-.+.++.+.+.|+++-+++..+..|.-..+ .+.+.+.+.......+..
T Consensus 161 ~~yDvIi~D~~dp~~~~------~~~L-~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y~~ 233 (295)
T d1inla_ 161 NEFDVIIIDSTDPTAGQ------GGHL-FTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLG 233 (295)
T ss_dssp SCEEEEEEEC----------------C-CSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred CCCCEEEEcCCCCCcCc------hhhh-ccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEEEe
Confidence 35799999877664211 0011 1256778888899998888776665433333 333344443221122334
Q ss_pred eCCcc
Q 017997 154 SNPEF 158 (362)
Q Consensus 154 ~~Pe~ 158 (362)
+-|.+
T Consensus 234 ~vPty 238 (295)
T d1inla_ 234 FMTTY 238 (295)
T ss_dssp ECTTS
T ss_pred eecee
Confidence 55665
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=93.75 E-value=0.017 Score=50.86 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=28.4
Q ss_pred eEEEEcCChhHHHHHHHHHHc---CCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALK---CPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~---~~G~~V~~~d~~~ 36 (362)
-|.|||+|..|+.+|..|++. ..|++|+++|+++
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~ 45 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS 45 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence 489999999999999999741 1299999999764
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=93.66 E-value=0.048 Score=46.94 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=34.1
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| | .+.+|..+|..|++. |++|++.|+++++++++.+
T Consensus 6 K~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~ 47 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAE--GAKVAVLDKSAERLAELET 47 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 45555 5 589999999999999 9999999999998887654
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=93.65 E-value=0.024 Score=48.00 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=29.3
Q ss_pred ceEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|||.|| | .+.+|..+|..|++. |++|++.|++++
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~--Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAA--GHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECChH
Confidence 777766 5 678999999999999 999999999753
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=93.54 E-value=0.055 Score=47.56 Aligned_cols=113 Identities=12% Similarity=0.138 Sum_probs=66.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhh----
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---- 76 (362)
.+|.|||+|.-+. +..+.+..+..+|+++++|++.++..++--....... ....+++. ..|..+.+
T Consensus 79 k~VLiiG~G~G~~--~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~-------~~d~rv~i~~~Da~~~l~~~~ 149 (312)
T d1uira_ 79 KRVLIVGGGEGAT--LREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGA-------FDDPRAVLVIDDARAYLERTE 149 (312)
T ss_dssp CEEEEEECTTSHH--HHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTG-------GGCTTEEEEESCHHHHHHHCC
T ss_pred ceEEEeCCCchHH--HHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCc-------cCCCceEEEEchHHHHhhhcC
Confidence 4899999997654 4555555345689999999999986654210000000 01233432 34543322
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
+..|+||+-++.|...++ .+.--+-.+.++.+.+.|+++-+++..++
T Consensus 150 ~~yDvIi~D~~dp~~~~~-----~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 150 ERYDVVIIDLTDPVGEDN-----PARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp CCEEEEEEECCCCBSTTC-----GGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CcccEEEEeCCCcccccc-----hhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence 468999998866643211 11001125677888899999888765443
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.031 Score=47.19 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=33.3
Q ss_pred eEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI--GlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| |.+.+|..+|..|++. |++|++.|+++++++.+.+
T Consensus 6 KvalITGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~ 47 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQ--GASAVLLDLPNSGGEAQAK 47 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECTTSSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHH
Confidence 56655 4678999999999999 9999999999887766543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=93.38 E-value=0.15 Score=43.16 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=31.9
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
|+++| | .+.+|..+|..|++. |++|++.|+++++++++.
T Consensus 10 K~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~ 50 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAA--GANVAVIYRSAADAVEVT 50 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT--TEEEEEEESSCTTHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 55555 5 567999999999999 999999999987766543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=93.37 E-value=0.26 Score=42.13 Aligned_cols=140 Identities=19% Similarity=0.198 Sum_probs=78.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhh----
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---- 76 (362)
.+|.|||.|.-+. +..+.+..+..+|+++|+|++.++..++-- +. ........+++. ..|..+-+
T Consensus 77 ~~vLiiGgG~G~~--~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~-~~-------~~~~~~d~r~~i~~~D~~~~l~~~~ 146 (274)
T d1iy9a_ 77 EHVLVVGGGDGGV--IREILKHPSVKKATLVDIDGKVIEYSKKFL-PS-------IAGKLDDPRVDVQVDDGFMHIAKSE 146 (274)
T ss_dssp CEEEEESCTTCHH--HHHHTTCTTCSEEEEEESCHHHHHHHHHHC-HH-------HHTTTTSTTEEEEESCSHHHHHTCC
T ss_pred ceEEecCCCCcHH--HHHHHhcCCcceEEEecCCHHHHHHHHHhC-hh-------hcccccCCCeEEEechHHHHHhhcC
Confidence 4799999998774 455555433468999999999998765421 00 000001233332 23422222
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHH---HHHHHHhccCCCceEEe
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA---IEKILTHNSKGIKFQIL 153 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~---l~~~l~~~~~g~~~~v~ 153 (362)
+.-|+|++-.+.|... ...+ +-++..+.+.+.|+++.+++..+..+....+. +...+.+..+....+..
T Consensus 147 ~~yDvIi~D~~~p~~~-------~~~L-~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~ 218 (274)
T d1iy9a_ 147 NQYDVIMVDSTEPVGP-------AVNL-FTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTA 218 (274)
T ss_dssp SCEEEEEESCSSCCSC-------CCCC-STTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCCCEEEEcCCCCCCc-------chhh-ccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEE
Confidence 3589999998766432 2222 12567788888899988887666544333333 33444443221122344
Q ss_pred eCCccc
Q 017997 154 SNPEFL 159 (362)
Q Consensus 154 ~~Pe~~ 159 (362)
+-|.+.
T Consensus 219 ~vPsy~ 224 (274)
T d1iy9a_ 219 NIPTYP 224 (274)
T ss_dssp CCTTSG
T ss_pred EeeecC
Confidence 556553
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.35 E-value=0.087 Score=41.87 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=27.9
Q ss_pred ceEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
+++.|||-+ .+|.|+|..|+++ |..|+.++++
T Consensus 30 K~vvVIGrS~iVG~Pla~lL~~~--gaTVt~~~~~ 62 (171)
T d1edza1 30 KKCIVINRSEIVGRPLAALLAND--GATVYSVDVN 62 (171)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTT--SCEEEEECSS
T ss_pred CEEEEECCccccHHHHHHHHHHC--CCEEEEeccc
Confidence 479999966 5799999999998 8999999875
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.25 E-value=0.037 Score=49.87 Aligned_cols=31 Identities=35% Similarity=0.551 Sum_probs=29.0
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
|||.|.| .|++|..++..|.++ ||+|+++|-
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~--g~~V~~iDn 33 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKK--NYEVCIVDN 33 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--cCEEEEEec
Confidence 8999998 699999999999999 999999994
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=93.25 E-value=0.44 Score=39.63 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=33.6
Q ss_pred ceEEEE-cC-ChhHHHHHHHHHHcCCCCe-------EEEEeCCHHHHHHHHc
Q 017997 2 VKICCI-GA-GYVGGPTMAVIALKCPSIE-------VAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VI-Gl-G~~G~~lA~~la~~~~G~~-------V~~~d~~~~~~~~l~~ 44 (362)
++|.+| |. +-+|..+|..|++. |++ |+++++++++++++.+
T Consensus 1 K~VvlITGas~GIG~aia~~la~~--G~~~~~~~~~v~~~~r~~~~l~~~~~ 50 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARA--ARHHPDFEPVLVLSSRTAADLEKISL 50 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHH--TTTCTTCCEEEEEEESCHHHHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHh--CccccccCcEEEEEeCCHHHHHHHHH
Confidence 356655 64 77999999999999 887 9999999999887653
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.21 E-value=0.34 Score=41.01 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=33.0
Q ss_pred EEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 4 ICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 4 I~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
+-|.| .+.+|..+|..|++. |++|++.+|++++++++.+
T Consensus 17 alITGassGIG~aiA~~la~~--G~~Vil~~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 17 VIVTGASKGIGREMAYHLAKM--GAHVVVTARSKETLQKVVS 56 (269)
T ss_dssp EEESSCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 44556 466999999999999 9999999999999887653
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=93.20 E-value=0.061 Score=45.34 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=34.0
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| | .+.+|..+|..|++. |++|++.|+++++++.+.+
T Consensus 6 K~~lITGas~GIG~aia~~l~~~--G~~V~~~~r~~~~l~~~~~ 47 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKE--GARLVACDIEEGPLREAAE 47 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 55555 5 577999999999999 9999999999998887654
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.16 E-value=0.061 Score=46.21 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=33.3
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+++| | .+.+|..+|..|++. |++|++.|+++++++++.+
T Consensus 5 K~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~ 46 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKE--GAQVTITGRNEDRLEETKQ 46 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 45555 4 578999999999999 9999999999998876653
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.05 E-value=0.39 Score=41.20 Aligned_cols=110 Identities=18% Similarity=0.211 Sum_probs=64.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhh----
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---- 76 (362)
.+|-|||+|.-|. +..+.+..+..+|+++|+|++.++..++- .+ .... .....+++. ..|..+-+
T Consensus 80 k~vLiiGgG~G~~--~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~-~~----~~~~---~~~d~rv~i~~~Da~~~l~~~~ 149 (285)
T d2o07a1 80 RKVLIIGGGDGGV--LREVVKHPSVESVVQCEIDEDVIQVSKKF-LP----GMAI---GYSSSKLTLHVGDGFEFMKQNQ 149 (285)
T ss_dssp CEEEEEECTTSHH--HHHHTTCTTCCEEEEEESCHHHHHHHHHH-CH----HHHG---GGGCTTEEEEESCHHHHHHTCS
T ss_pred CeEEEeCCCchHH--HHHHHHcCCcceeeeccCCHHHHHHHHhh-ch----hhcc---ccCCCCceEEEccHHHHHhcCC
Confidence 4799999998874 45566543356999999999999877652 10 0000 011234432 34433333
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCC
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv 129 (362)
+..|+||+-.+.|... +.--+-.+.++.+.+.|+++-+++..+..
T Consensus 150 ~~yDvIi~D~~~p~~~--------~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 150 DAFDVIITDSSDPMGP--------AESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp SCEEEEEEECC-------------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCCEEEEcCCCCCCc--------ccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 3569999998765432 11112346678888899998887665543
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=93.04 E-value=0.025 Score=50.15 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=27.3
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
||||-|.| .|++|..++..|.++ ||+|.++.+
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~--g~~v~v~~~ 34 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNN--HPDVHVTVL 34 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHH--CTTCEEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHC--CCCeEEEEE
Confidence 89999998 799999999999999 787555543
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=93.02 E-value=0.46 Score=40.07 Aligned_cols=38 Identities=21% Similarity=0.147 Sum_probs=30.6
Q ss_pred eEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCH-HHHHHH
Q 017997 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISV-SRINAW 42 (362)
Q Consensus 3 kI~VI--GlG~~G~~lA~~la~~~~G~~V~~~d~~~-~~~~~l 42 (362)
|+++| |.+.+|..+|..|++. |++|++.+++. +.++.+
T Consensus 8 K~alITGas~GIG~aia~~la~~--G~~Vv~~~r~~~~~~~~~ 48 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATE--KAKVVVNYRSKEDEANSV 48 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcHHHHHHH
Confidence 56666 4688999999999999 99999999974 344443
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.96 E-value=0.069 Score=44.96 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=33.6
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++-|.| .+.+|..+|..|++. |++|++.|+++++++++.+
T Consensus 7 ~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~ 47 (242)
T d1cyda_ 7 RALVTGAGKGIGRDTVKALHAS--GAKVVAVTRTNSDLVSLAK 47 (242)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 344556 467999999999999 9999999999998887764
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.88 E-value=0.29 Score=42.58 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=75.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhh----
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---- 76 (362)
.+|-|||.|.-|. +..+.+..+.-+|+++++|++.++..++-- +.....+ ...+++. ..|..+.+
T Consensus 108 k~VLIiGgG~G~~--~rellk~~~v~~v~~VEID~~Vv~~a~~~~-~~~~~~~-------~dprv~i~i~Da~~~l~~~~ 177 (312)
T d2b2ca1 108 KRVLIIGGGDGGI--LREVLKHESVEKVTMCEIDEMVIDVAKKFL-PGMSCGF-------SHPKLDLFCGDGFEFLKNHK 177 (312)
T ss_dssp CEEEEESCTTSHH--HHHHTTCTTCCEEEEECSCHHHHHHHHHHC-TTTSGGG-------GCTTEEEECSCHHHHHHHCT
T ss_pred CeEEEeCCCchHH--HHHHHHcCCcceEEEEcccHHHHHHHHhhc-hhhcccc-------CCCCeEEEEchHHHHHHhCC
Confidence 4799999998874 556666533358999999999998776521 1111111 1234443 23433323
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH---HHHHHHHhccCCCceEEe
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE---AIEKILTHNSKGIKFQIL 153 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~---~l~~~l~~~~~g~~~~v~ 153 (362)
+..|+||+-++.|... +.--+-.+.++.+.+.|+++-+++..+..+.-..+ .+...+.+..+....+..
T Consensus 178 ~~yDvII~D~~dp~~~--------~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~ 249 (312)
T d2b2ca1 178 NEFDVIITDSSDPVGP--------AESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQS 249 (312)
T ss_dssp TCEEEEEECCC---------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred CCCCEEEEcCCCCCCc--------chhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeee
Confidence 3579999988766422 11113366788889999998888776654433333 333344443221122334
Q ss_pred eCCcc
Q 017997 154 SNPEF 158 (362)
Q Consensus 154 ~~Pe~ 158 (362)
+-|.+
T Consensus 250 ~vPty 254 (312)
T d2b2ca1 250 IVSTY 254 (312)
T ss_dssp ECTTS
T ss_pred ccCCc
Confidence 55654
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=92.86 E-value=0.051 Score=47.93 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=31.7
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~ 38 (362)
+||-|.| .|++|..++..|.++ ||+|+++|++...
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~--g~~V~~~~r~~~~ 44 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTM--GATVKGYSLTAPT 44 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCCCc
Confidence 6899998 799999999999999 9999999997543
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=92.83 E-value=0.046 Score=46.12 Aligned_cols=42 Identities=12% Similarity=0.320 Sum_probs=34.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSD 45 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~ 45 (362)
.||.|+|+|.+|+.+|..|++. |. +++++|-|.-....|++.
T Consensus 31 ~~VliiG~GglGs~va~~La~~--Gvg~i~lvD~D~Ve~sNL~RQ 73 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASA--GVGNLTLLDFDTVSLSNLQRQ 73 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCSEEEEECCCBCCGGGGGTC
T ss_pred CCEEEECCCHHHHHHHHHHHHc--CCCeEEEECCcccchhhhhhh
Confidence 3799999999999999999999 65 899999876555556554
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.63 E-value=0.56 Score=40.26 Aligned_cols=111 Identities=15% Similarity=0.173 Sum_probs=67.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhh----
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---- 76 (362)
.+|.|||+|--|. +..+.+..+.-+|+++|+|++.++..++-- + ..... ....+++. ..|-.+-+
T Consensus 82 k~VLiiGgG~G~~--~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f-~----~~~~~---~~~~r~~i~~~Da~~~l~~~~ 151 (290)
T d1xj5a_ 82 KKVLVIGGGDGGV--LREVARHASIEQIDMCEIDKMVVDVSKQFF-P----DVAIG---YEDPRVNLVIGDGVAFLKNAA 151 (290)
T ss_dssp CEEEEETCSSSHH--HHHHTTCTTCCEEEEEESCHHHHHHHHHHC-H----HHHGG---GGSTTEEEEESCHHHHHHTSC
T ss_pred cceEEecCCchHH--HHHHHhcccceeeEEecCCHHHHHHHHHhc-h----hhhcc---ccCCCcEEEEccHHHHHhhcc
Confidence 4899999998885 455665533358999999999998776511 0 00000 11234432 23422212
Q ss_pred -cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCc
Q 017997 77 -SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (362)
Q Consensus 77 -~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~ 130 (362)
+..|+||+-++.|... ...+ +-.+.++.+.+.|+++-+++.-+..+
T Consensus 152 ~~~yDvIi~D~~dp~~~-------~~~L-~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 152 EGSYDAVIVDSSDPIGP-------AKEL-FEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp TTCEEEEEECCCCTTSG-------GGGG-GSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred ccCccEEEEcCCCCCCc-------chhh-CCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 2589999988766432 1111 23567888999999988887766544
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.59 E-value=0.037 Score=43.29 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=27.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
.||.|||.|+.|.-+|..|++ +.+|+++++.
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~---~~~Vtvv~~~ 31 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ---TYEVTVIDKE 31 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT---TSEEEEECSS
T ss_pred CeEEEECCcHHHHHHHHHHHc---CCCEEEEecc
Confidence 389999999999999998865 6799999874
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.59 E-value=0.081 Score=44.81 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=34.4
Q ss_pred eEEEE-c-CChhHHHHHHHHHH---cCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCI-G-AGYVGGPTMAVIAL---KCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~---~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
||+|| | .+.+|..+|..|++ + |++|++.+|++++++++.+
T Consensus 7 KvalITGas~GIG~aiA~~lA~~~~~--G~~Vv~~~r~~~~l~~~~~ 51 (259)
T d1oaaa_ 7 AVCVLTGASRGFGRALAPQLARLLSP--GSVMLVSARSESMLRQLKE 51 (259)
T ss_dssp EEEEESSCSSHHHHHHHHHHHTTBCT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHhcccC--CCEEEEEECCHHHHHHHHH
Confidence 78888 5 46899999999996 5 8999999999999887654
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=92.54 E-value=0.12 Score=43.39 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=27.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEe
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVD 33 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d 33 (362)
.+|+|-|.|.||..+|..|.+. |.+|++++
T Consensus 32 ~~v~IqGfGnVG~~~a~~L~~~--Gakvv~vs 61 (242)
T d1v9la1 32 KTVAIQGMGNVGRWTAYWLEKM--GAKVIAVS 61 (242)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEee
Confidence 4799999999999999999998 99998776
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=92.42 E-value=0.044 Score=46.23 Aligned_cols=33 Identities=30% Similarity=0.199 Sum_probs=30.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.|.|||.|..|+..|..++++ |++|+++|.++.
T Consensus 6 DViIIGaG~aGl~aA~~la~~--G~~V~vlEk~~~ 38 (253)
T d2gqfa1 6 ENIIIGAGAAGLFCAAQLAKL--GKSVTVFDNGKK 38 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSS
T ss_pred cEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCC
Confidence 489999999999999999999 999999998764
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.33 E-value=0.04 Score=45.93 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=45.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G--~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
+||.|.| .|++|..+...|.++ | ++|++++|++..... +.... +.. ....+.-..++.+++++
T Consensus 15 k~IlItGaTG~iG~~l~~~Ll~~--g~~~~v~~~~R~~~~~~~----------~~~~~-i~~-~~~D~~~~~~~~~~~~~ 80 (232)
T d2bkaa1 15 KSVFILGASGETGRVLLKEILEQ--GLFSKVTLIGRRKLTFDE----------EAYKN-VNQ-EVVDFEKLDDYASAFQG 80 (232)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHH--TCCSEEEEEESSCCCCCS----------GGGGG-CEE-EECCGGGGGGGGGGGSS
T ss_pred CEEEEECCCcHHHHHHHHHHHhC--CCCCEEEEEecChhhhcc----------cccce-eee-eeecccccccccccccc
Confidence 4799998 699999999999988 6 589999986432111 00000 000 00001111345566789
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
+|++|.|+.+
T Consensus 81 ~d~vi~~~~~ 90 (232)
T d2bkaa1 81 HDVGFCCLGT 90 (232)
T ss_dssp CSEEEECCCC
T ss_pred cccccccccc
Confidence 9999999764
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.26 E-value=0.066 Score=41.57 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=28.7
Q ss_pred EEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHH
Q 017997 4 ICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRI 39 (362)
Q Consensus 4 I~VI--GlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~ 39 (362)
+.|+ |.|++|+.+|..|++. |++|+++++.+.-.
T Consensus 42 vvi~d~ggg~ig~e~A~~la~~--G~~Vtlv~~~~~~~ 77 (156)
T d1djqa2 42 VVILNADTYFMAPSLAEKLATA--GHEVTIVSGVHLAN 77 (156)
T ss_dssp EEEEECCCSSHHHHHHHHHHHT--TCEEEEEESSCTTT
T ss_pred eEEEecCCChHHHHHHHHHHHc--CCeEEEEecCCccc
Confidence 4444 9999999999999999 99999999875433
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=92.24 E-value=0.13 Score=39.18 Aligned_cols=98 Identities=11% Similarity=-0.022 Sum_probs=63.7
Q ss_pred ceEEEEcC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
.+|+|||+ +..|..+...|.+. ||++..+..++..- . -.......++.+.-.
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~--g~~~~~v~~~~~~~-~---------------------i~g~~~~~~l~~i~~ 69 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQ--GYRVLPVNPRFQGE-E---------------------LFGEEAVASLLDLKE 69 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT--TCEEEEECGGGTTS-E---------------------ETTEECBSSGGGCCS
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcC--CCCceEEEeccccc-e---------------------eeceecccchhhccC
Confidence 47999997 78999999999998 99999998753210 0 013566677777446
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH-HHHHHHHHhc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA-EAIEKILTHN 144 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~-~~l~~~l~~~ 144 (362)
..|++++++|.. .+.+++++..+. ....+++ .+|.. +.+.+..++.
T Consensus 70 ~iD~v~v~~p~~---------------~v~~~v~~~~~~-g~k~i~~-----q~G~~~~e~~~~a~~~ 116 (136)
T d1iuka_ 70 PVDILDVFRPPS---------------ALMDHLPEVLAL-RPGLVWL-----QSGIRHPEFEKALKEA 116 (136)
T ss_dssp CCSEEEECSCHH---------------HHTTTHHHHHHH-CCSCEEE-----CTTCCCHHHHHHHHHT
T ss_pred CCceEEEeccHH---------------HHHHHHHHHHhh-CCCeEEE-----ecCccCHHHHHHHHHc
Confidence 789999998742 234455555443 3444544 34443 4566655554
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.12 E-value=0.71 Score=38.91 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=30.2
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCC-HHHHHHH
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDIS-VSRINAW 42 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~-~~~~~~l 42 (362)
|+++| | .+.+|..+|..|+++ |++|++.|++ ++.++.+
T Consensus 19 K~~lITGas~GIG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~ 59 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRR--GCKVIVNYANSTESAEEV 59 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCchHHHHHH
Confidence 55555 4 799999999999999 9999999987 4444443
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.97 E-value=0.3 Score=42.07 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=34.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEe-----------CCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVD-----------ISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d-----------~~~~~~~~l~~ 44 (362)
++|+|-|.|.||...|..|.+. |.+|++++ +|.+.+..+..
T Consensus 37 ktvaIqGfGnVG~~~A~~L~e~--Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~ 88 (293)
T d1hwxa1 37 KTFAVQGFGNVGLHSMRYLHRF--GAKCVAVGESDGSIWNPDGIDPKELEDFKL 88 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEEETTEEECCTTCCCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEccchhhccccccchHHHHHHHH
Confidence 4799999999999999999999 99999886 56666666554
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=91.92 E-value=0.054 Score=47.83 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=31.8
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRI 39 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~ 39 (362)
++|.|+| .|++|..++..|.++ ||+|+++-|++...
T Consensus 4 ktIlVtGatG~iG~~lv~~Ll~~--G~~V~~l~R~~~~~ 40 (350)
T d1xgka_ 4 KTIAVVGATGRQGASLIRVAAAV--GHHVRAQVHSLKGL 40 (350)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT--TCCEEEEESCSCSH
T ss_pred CEEEEECCChHHHHHHHHHHHhC--CCeEEEEECCcchh
Confidence 4799998 599999999999999 99999999876544
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=91.87 E-value=0.054 Score=46.35 Aligned_cols=33 Identities=30% Similarity=0.550 Sum_probs=28.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.|.|||+|.-|+..|..|++. +|++|+++|..+
T Consensus 35 DViVIGaGpaGL~aA~~LA~~-~G~~V~vlE~~~ 67 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSV 67 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTS-TTSCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHc-cCCeEEEEecCC
Confidence 389999999999999999862 299999999865
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=91.77 E-value=0.071 Score=43.50 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=28.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
-|.|||.|..|+..|..+++. |.+|.+++.+
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~--G~kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMY--GQKCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTT--TCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCEEEEEecc
Confidence 378999999999999999998 9999999975
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=91.76 E-value=0.12 Score=43.11 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=32.3
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
++-|.| .+.+|..+|..|++. |++|++.|++++.+++.
T Consensus 6 ~~lVTGas~GIG~aia~~l~~~--Ga~V~~~~r~~~~l~~~ 44 (234)
T d1o5ia_ 6 GVLVLAASRGIGRAVADVLSQE--GAEVTICARNEELLKRS 44 (234)
T ss_dssp EEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHT
T ss_pred EEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHhc
Confidence 355556 577999999999999 99999999999887764
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.54 E-value=0.064 Score=44.58 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=33.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
.+|-.+|||. | ..+..||+. |++|+++|.+++.++..++
T Consensus 47 ~rvLd~GCG~-G-~~a~~LA~~--G~~V~gvD~S~~ai~~a~~ 85 (229)
T d2bzga1 47 LRVFFPLCGK-A-VEMKWFADR--GHSVVGVEISELGIQEFFT 85 (229)
T ss_dssp CEEEETTCTT-C-THHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCC-c-HHHHHHHhC--CCcEEEEeCCHHHHHHHHH
Confidence 4789999998 4 478889998 9999999999999987664
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=91.39 E-value=0.051 Score=43.01 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=28.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.+|.|||.|..|.-+|..|++. |.+|+++.+.+
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~--g~~v~v~~~~~ 36 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRAS--GWEGNIRLVGD 36 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECS
T ss_pred CCEEEECCcHHHHHHHHHHHHc--CCceEEEEecC
Confidence 4799999999999999999998 88887776553
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.29 E-value=0.49 Score=37.13 Aligned_cols=41 Identities=10% Similarity=0.086 Sum_probs=33.9
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD 45 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~ 45 (362)
+|.|.| .|.+|...++.+... |.+|++.+.++++.+.+++.
T Consensus 28 ~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~~~ 69 (183)
T d1pqwa_ 28 RVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSRL 69 (183)
T ss_dssp EEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHTT
T ss_pred EEEEECCCCCcccccchhhccc--cccceeeecccccccccccc
Confidence 578888 599999777666666 89999999999999988864
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=91.28 E-value=0.077 Score=47.13 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=27.4
Q ss_pred eEE-EEc-CChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KIC-CIG-AGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~-VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
||+ |.| .|++|+.++..|.++ ||+|+++|+..
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~--g~~V~~~~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEK--GYEVHGIKRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEECC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--cCEEEEEECCC
Confidence 566 667 899999999999999 99999999854
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=91.26 E-value=0.067 Score=39.56 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=27.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC-CCCeEEEEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC-PSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~-~G~~V~~~d~~ 35 (362)
.+|.|||.|++|.-+|..|...+ .|.+|+++++.
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~ 55 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRG 55 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESS
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEecc
Confidence 48999999999999997776541 15689999975
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=91.24 E-value=0.63 Score=39.00 Aligned_cols=95 Identities=18% Similarity=0.193 Sum_probs=57.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-cCHHhhh--cC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHV--SE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~--~~ 78 (362)
++|.=+|+|.-+++++.+-+- +++-.|+++|++++.++..++...... ...++++. .|..+.+ ..
T Consensus 87 ~rVLEiG~GsG~lt~~la~~v-~~~g~V~~vD~~e~~~~~A~~n~~~~~-----------~~~nv~~~~~Di~~~~~~~~ 154 (250)
T d1yb2a1 87 MDILEVGVGSGNMSSYILYAL-NGKGTLTVVERDEDNLKKAMDNLSEFY-----------DIGNVRTSRSDIADFISDQM 154 (250)
T ss_dssp CEEEEECCTTSHHHHHHHHHH-TTSSEEEEECSCHHHHHHHHHHHHTTS-----------CCTTEEEECSCTTTCCCSCC
T ss_pred CEEEEeeeeCcHHHHHHHHHh-CCCcEEEEEECCHHHHHHHHHHHHHhc-----------CCCceEEEEeeeecccccce
Confidence 477778888765544322221 224589999999999887665311100 11234332 2333322 35
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
.|.||+-+|.|. ++++.+.+.|++|-.++.
T Consensus 155 fD~V~ld~p~p~-----------------~~l~~~~~~LKpGG~lv~ 184 (250)
T d1yb2a1 155 YDAVIADIPDPW-----------------NHVQKIASMMKPGSVATF 184 (250)
T ss_dssp EEEEEECCSCGG-----------------GSHHHHHHTEEEEEEEEE
T ss_pred eeeeeecCCchH-----------------HHHHHHHHhcCCCceEEE
Confidence 799999887653 356777788888877754
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.12 E-value=0.87 Score=35.90 Aligned_cols=110 Identities=18% Similarity=0.190 Sum_probs=62.6
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhh---hcCC
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKH---VSEA 79 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a---~~~a 79 (362)
|.=||+|.=..++ .+++. +.+|+++|++++.++..++... ..+ ...++++ ..|..+. ....
T Consensus 37 VLDiGcGsG~~s~--~lA~~--~~~V~avD~~~~~l~~a~~n~~---~~g--------l~~~v~~~~gda~~~~~~~~~~ 101 (186)
T d1l3ia_ 37 AVDVGCGTGGVTL--ELAGR--VRRVYAIDRNPEAISTTEMNLQ---RHG--------LGDNVTLMEGDAPEALCKIPDI 101 (186)
T ss_dssp EEEESCTTSHHHH--HHHTT--SSEEEEEESCHHHHHHHHHHHH---HTT--------CCTTEEEEESCHHHHHTTSCCE
T ss_pred EEEEECCeEcccc--ccccc--ceEEEEecCCHHHHHHHHHHHH---HcC--------CCcceEEEECchhhcccccCCc
Confidence 4446777765544 45666 6799999999999987765200 000 1124433 2344332 3578
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|.|++.-+. ..+...++.+.+.++++..++.. .....+...+.+.+.+.
T Consensus 102 D~v~~~~~~---------------~~~~~~~~~~~~~LkpgG~lvi~-~~~~e~~~~~~~~l~~~ 150 (186)
T d1l3ia_ 102 DIAVVGGSG---------------GELQEILRIIKDKLKPGGRIIVT-AILLETKFEAMECLRDL 150 (186)
T ss_dssp EEEEESCCT---------------TCHHHHHHHHHHTEEEEEEEEEE-ECBHHHHHHHHHHHHHT
T ss_pred CEEEEeCcc---------------ccchHHHHHHHHHhCcCCEEEEE-eeccccHHHHHHHHHHc
Confidence 888876331 12466788888889887766542 22223333344445443
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=90.96 E-value=0.075 Score=45.88 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=29.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
-|.|||.|..|+..|..+++. |.+|++++..+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~--G~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDS--GAKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCcEEEEecCC
Confidence 389999999999999999999 99999999753
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=90.87 E-value=0.81 Score=38.02 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=27.8
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|+++| | .+.+|..+|..|++. |++|++.|++++
T Consensus 6 KvalVTGas~GIG~aia~~la~~--Ga~V~~~~~~~~ 40 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAVE--GADIAIADLVPA 40 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCch
Confidence 55655 5 578999999999999 999999999753
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=90.85 E-value=0.67 Score=36.87 Aligned_cols=97 Identities=14% Similarity=0.135 Sum_probs=57.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhh-h-cCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKH-V-SEA 79 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a-~-~~a 79 (362)
+|-=|||| .|. .+..|++. |++|+++|++++.++.+++... +.+ ..++.+ ..|..+. . ...
T Consensus 33 rvLDiGcG-~G~-~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~---~~~---------~~~~~~~~~d~~~~~~~~~f 96 (198)
T d2i6ga1 33 RTLDLGCG-NGR-NSLYLAAN--GYDVTAWDKNPASMANLERIKA---AEG---------LDNLQTDLVDLNTLTFDGEY 96 (198)
T ss_dssp EEEEETCT-TSH-HHHHHHHT--TCEEEEEESCHHHHHHHHHHHH---HTT---------CTTEEEEECCTTTCCCCCCE
T ss_pred cEEEECCC-CCH-HHHHHHHH--hhhhccccCcHHHHHHHHHHhh---hcc---------ccchhhhheecccccccccc
Confidence 56778999 554 66788898 9999999999998886653100 000 112322 2232221 1 345
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
|+|+..- + .. -.+-......++.+...++++.+++.
T Consensus 97 D~I~~~~-~-~~--------~~~~~~~~~~l~~~~~~L~pgG~~~~ 132 (198)
T d2i6ga1 97 DFILSTV-V-MM--------FLEAQTIPGLIANMQRCTKPGGYNLI 132 (198)
T ss_dssp EEEEEES-C-GG--------GSCTTHHHHHHHHHHHTEEEEEEEEE
T ss_pred cEEEEee-e-ee--------cCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 7776532 2 11 11112456788899999998876654
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=90.84 E-value=0.11 Score=46.44 Aligned_cols=32 Identities=25% Similarity=0.494 Sum_probs=27.7
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
|||-|.| +|++|..++..|.++. ||+|+++|.
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~-~~~V~~~D~ 35 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDT-NHSVVIVDS 35 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHC-CCEEEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhC-CCEEEEEec
Confidence 7999997 6999999999998632 899999994
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=90.81 E-value=0.4 Score=40.41 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=26.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV 32 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~ 32 (362)
.+|+|-|.|.||..+|..|.+. |.+|+++
T Consensus 37 ~~v~IQGfGnVG~~~a~~L~e~--Gakvvav 65 (255)
T d1bgva1 37 KTVALAGFGNVAWGAAKKLAEL--GAKAVTL 65 (255)
T ss_dssp CEEEECCSSHHHHHHHHHHHHH--TCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEE
Confidence 4799999999999999999999 8988865
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=90.77 E-value=0.14 Score=37.63 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=28.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC-CCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC-PSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~-~G~~V~~~d~~~ 36 (362)
.+|.|||.|++|.-+|..|++.. .|.+|+++++.+
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~ 54 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD 54 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence 48999999999999998776431 278999999853
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.69 E-value=0.7 Score=36.75 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=50.6
Q ss_pred ceEEEEcC--ChhHHHHHHHHHHcCCCCeEEEEeC-----CHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh
Q 017997 2 VKICCIGA--GYVGGPTMAVIALKCPSIEVAVVDI-----SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (362)
Q Consensus 2 mkI~VIGl--G~~G~~lA~~la~~~~G~~V~~~d~-----~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (362)
.||++||= -.|--+++..++.- |.+|.++.. +++.++.+++ ... .....+++++++++
T Consensus 6 lkia~vGD~~nnV~~Sli~~~~~~--G~~l~l~~P~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~d~~e 70 (185)
T d1dxha2 6 ISYAYLGDARNNMGNSLLLIGAKL--GMDVRIAAPKALWPHDEFVAQCKK------------FAE-ESGAKLTLTEDPKE 70 (185)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHHT--TCEEEEECCGGGSCCHHHHHHHHH------------HHH-HHTCEEEEESCHHH
T ss_pred CEEEEEcCCcchHHHHHHHHHHHc--CCEEEEEccHHHHhhhHHHHHHHH------------Hhh-ccCCeEEEEeChhh
Confidence 48999994 47899999888887 999998875 3344443322 000 12356889999999
Q ss_pred hhcCCcEEEEec
Q 017997 75 HVSEADIVFVSV 86 (362)
Q Consensus 75 a~~~aDvVii~v 86 (362)
+++++|+|..-+
T Consensus 71 ai~~aDvVyt~~ 82 (185)
T d1dxha2 71 AVKGVDFVHTDV 82 (185)
T ss_dssp HTTTCSEEEECC
T ss_pred ccccccEEEeeh
Confidence 999999987654
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.65 E-value=1.1 Score=38.11 Aligned_cols=117 Identities=19% Similarity=0.158 Sum_probs=66.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhh---hc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKH---VS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a---~~ 77 (362)
.+|.|||+|.-+.+ ..+.+. +.-+|+++++|++.++..++- .+... +..+........+++. ..|..+- -+
T Consensus 74 ~~vLiiG~G~G~~~--~~~l~~-~~~~v~~VEiD~~Vi~~a~~~-f~~~~-~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 74 KRVLVIGGGDGGTV--REVLQH-DVDEVIMVEIDEDVIMVSKDL-IKIDN-GLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp CEEEEEECTTSHHH--HHHTTS-CCSEEEEEESCHHHHHHHHHH-TCTTT-THHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred ceEEEecCCchHHH--HHHHHh-CCceEEEecCCHHHHHHHHHh-hhhcc-chhhhhhccCCCCceEEEChHHHHHhccC
Confidence 47999999987754 444444 245899999999999876641 11111 1111110011234443 2343221 25
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPV 131 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~ 131 (362)
.-|+||+-++.|... ...+ +-.+.++.+.+.|+++-+++.-+..+.
T Consensus 149 ~yDvIi~D~~~~~~~-------~~~L-~t~eF~~~~~~~L~~~Gv~v~q~~s~~ 194 (276)
T d1mjfa_ 149 GFDVIIADSTDPVGP-------AKVL-FSEEFYRYVYDALNNPGIYVTQAGSVY 194 (276)
T ss_dssp CEEEEEEECCCCC------------T-TSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred CCCEEEEeCCCCCCC-------cccc-cCHHHHHhhHhhcCCCceEEEecCCcc
Confidence 789999988766432 1111 125678888899998888766554433
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.65 E-value=0.12 Score=44.77 Aligned_cols=31 Identities=35% Similarity=0.515 Sum_probs=28.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
.||.|.| .|++|..++..|.++ ||+|+++|+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~--g~~V~~~d~ 33 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDN 33 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeC
Confidence 4899997 699999999999999 999999996
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=90.54 E-value=0.11 Score=42.18 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=28.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
-|.|||.|.-|+..|..+++. |.+|+++|.+
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~--G~kV~vie~~ 35 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQL--GFKTTCIEKR 35 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHH--TCCEEEEECS
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCcEEEEEec
Confidence 378999999999999999999 9999999975
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.51 E-value=0.1 Score=45.40 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=30.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
+|.|||.|.-|+..|..|+++.+|++|+++|.++
T Consensus 52 ~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 85 (311)
T d2gjca1 52 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV 85 (311)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 5999999999999999999755599999999864
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=90.49 E-value=1.6 Score=35.06 Aligned_cols=122 Identities=15% Similarity=0.080 Sum_probs=68.4
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-cCHHh---hh--c
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEK---HV--S 77 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~---a~--~ 77 (362)
|-=||||.=... ..+|+..|+..++|+|+++..+..+.+. ..+....++++. .|... .+ .
T Consensus 33 vLeIGcG~G~~~--~~lA~~~p~~~~iGiD~~~~~i~~a~~~------------~~~~~l~Nv~~~~~Da~~l~~~~~~~ 98 (204)
T d2fcaa1 33 HIEVGTGKGQFI--SGMAKQNPDINYIGIELFKSVIVTAVQK------------VKDSEAQNVKLLNIDADTLTDVFEPG 98 (204)
T ss_dssp EEEECCTTSHHH--HHHHHHCTTSEEEEECSCHHHHHHHHHH------------HHHSCCSSEEEECCCGGGHHHHCCTT
T ss_pred EEEEEecCcHHH--HHHHHhCCCCcEEEeecchHHHHHHHHH------------HHHHhccCchhcccchhhhhcccCch
Confidence 445899976643 4567777789999999999888765431 001011244432 23221 12 3
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
..|.|++.-|.|.-...-...+-.. .+.++.+...|++|.++.+.|-. ....+.+.+.+.+.
T Consensus 99 ~~d~v~i~fp~P~~k~~h~k~Rl~~----~~~l~~~~r~LkpgG~l~i~TD~-~~y~~~~~~~~~~~ 160 (204)
T d2fcaa1 99 EVKRVYLNFSDPWPKKRHEKRRLTY----SHFLKKYEEVMGKGGSIHFKTDN-RGLFEYSLKSFSEY 160 (204)
T ss_dssp SCCEEEEESCCCCCSGGGGGGSTTS----HHHHHHHHHHHTTSCEEEEEESC-HHHHHHHHHHHHHH
T ss_pred hhhccccccccccchhhhcchhhhH----HHHHHHHHHhCCCCcEEEEEECC-hHHHHHHHHHHHHC
Confidence 5788888888775321000000001 35677888889999888665422 23334444445443
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=90.38 E-value=1.3 Score=36.64 Aligned_cols=40 Identities=10% Similarity=0.064 Sum_probs=31.2
Q ss_pred eEEEE--cCChhHHHHHHHHHHcCCCCeEEEEe-CCHHHHHHHHc
Q 017997 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVD-ISVSRINAWNS 44 (362)
Q Consensus 3 kI~VI--GlG~~G~~lA~~la~~~~G~~V~~~d-~~~~~~~~l~~ 44 (362)
+|++| |.+.+|..+|..|++. |++|++.+ ++++..+++.+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~--Ga~V~i~~~~~~~~~~~~~~ 44 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKA--GCKVLVNYARSAKAAEEVSK 44 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHH
Confidence 45666 4688999999999999 99998865 57777766543
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=90.37 E-value=0.62 Score=39.01 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=27.6
Q ss_pred EEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 4 ICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 4 I~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
|-|-| .+.+|..+|..|++. |.+|++.+++.++.+.+
T Consensus 8 vlITGgs~GIG~~~A~~la~~--G~~vii~~r~~~~~~~~ 45 (254)
T d1sbya1 8 VIFVAALGGIGLDTSRELVKR--NLKNFVILDRVENPTAL 45 (254)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--CCSEEEEEESSCCHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHC--CCEEEEEECCcccHHHH
Confidence 44555 567999999999999 99988887665544433
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=90.27 E-value=0.15 Score=42.98 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=31.1
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
|+++| | .+.+|..+|..|++. |++|++.|++++..+..
T Consensus 6 K~alITGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~ 45 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFARE--GALVALCDLRPEGKEVA 45 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSTTHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 45555 4 789999999999999 99999999997765543
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=90.23 E-value=1.2 Score=35.72 Aligned_cols=103 Identities=21% Similarity=0.269 Sum_probs=61.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCP-SIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~-G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||.|||.|--|..++.++.+.+. +.+.+.+|.|.+.++..... .
T Consensus 1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~a~----------------------------------~ 46 (194)
T d1w5fa1 1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNAD----------------------------------V 46 (194)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHTCCCS----------------------------------E
T ss_pred CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHhcCCcc----------------------------------e
Confidence 699999999999999999988632 35678888887765532210 1
Q ss_pred EEEEeccCCCCCCCCCCCCCCChH--HHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHH
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLT--YWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKIL 141 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~--~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l 141 (362)
-+.+--. .. .|.+.+.+|++. ..++..+.|.+.+....+|++..-...||-....+.+
T Consensus 47 ki~iG~~-~t--~G~G~g~~p~~g~~aa~e~~~~I~~~l~~~d~vfi~AGlGGgTGtgaapvi 106 (194)
T d1w5fa1 47 KIQIGEN-IT--RGLGAGGRPEIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVI 106 (194)
T ss_dssp EEECCTT-TT--TTSCCTTCHHHHHHHHHHTHHHHHHHTTTCSEEEEEEETTSSHHHHHHHHH
T ss_pred EEecccc-cC--CCcccccCchhhHhHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Confidence 1111110 00 111112233332 2234446777788888888887878777765544443
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.22 E-value=0.14 Score=41.96 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=28.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
-|.|||.|.-|+..|..+++. |++|+++|..
T Consensus 7 DviVIG~GpAGl~aA~~aa~~--G~kV~lie~~ 37 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQL--GFNTACVEKR 37 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCcEEEEEec
Confidence 389999999999999999999 9999999975
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=90.21 E-value=0.73 Score=38.76 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=31.4
Q ss_pred ceEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHH
Q 017997 2 VKICCI--GAGYVGGPTMAVIALKCPSIEVAVVDI-SVSRINAWN 43 (362)
Q Consensus 2 mkI~VI--GlG~~G~~lA~~la~~~~G~~V~~~d~-~~~~~~~l~ 43 (362)
|-|+|| |.+.+|..+|..|++. |++|++.++ +++..+++.
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~--Ga~V~i~~~~~~~~~~~~~ 44 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAE--GYAVCLHYHRSAAEANALS 44 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCCHHHHHHHH
Confidence 457888 4578999999999999 999988665 566666554
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=90.07 E-value=0.75 Score=38.57 Aligned_cols=33 Identities=12% Similarity=0.003 Sum_probs=28.1
Q ss_pred eEEEEcC-C--hhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCIGA-G--YVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VIGl-G--~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
++-|.|. | .+|.++|..|++. |++|++.+++++
T Consensus 7 ~alITGaag~~GIG~AiA~~la~~--Ga~V~i~~r~~~ 42 (274)
T d2pd4a1 7 KGLIVGVANNKSIAYGIAQSCFNQ--GATLAFTYLNES 42 (274)
T ss_dssp EEEEECCCSTTSHHHHHHHHHHTT--TCEEEEEESSTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence 4666775 5 5999999999999 999999999854
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.00 E-value=0.11 Score=47.64 Aligned_cols=42 Identities=26% Similarity=0.473 Sum_probs=34.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSD 45 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~ 45 (362)
+||.|||+|.+|..++..|+.. |. +++++|.|.=....|+++
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~--Gvg~i~lvD~D~Ve~sNL~RQ 80 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALS--GFRQIHVIDMDTIDVSNLNRQ 80 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTT--TCCCEEEECCCBCCGGGGGTC
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCCeEEEEECCCcchhhhccc
Confidence 4899999999999999999998 66 799999875544555554
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=89.98 E-value=0.61 Score=36.73 Aligned_cols=41 Identities=22% Similarity=0.100 Sum_probs=31.3
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD 45 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~ 45 (362)
+|.|.|+ |.+|.. +..|++.. |.+|++.++++++.+.+++.
T Consensus 32 ~VlV~ga~ggvG~~-aiqlak~~-Ga~vi~~~~~~~~~~~~~~~ 73 (182)
T d1v3va2 32 TVLVSAAAGAVGSV-VGQIAKLK-GCKVVGAAGSDEKIAYLKQI 73 (182)
T ss_dssp EEEESSTTSHHHHH-HHHHHHHT-TCEEEEEESSHHHHHHHHHT
T ss_pred EEEEEeCCCchhHH-HHHHHHcc-CCEEEEeCCCHHHHHHHHhh
Confidence 5778887 557764 55555543 89999999999999988864
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=89.97 E-value=0.56 Score=38.95 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=26.1
Q ss_pred ceEEEEcCChhHHHHHHHHH-HcCCCCeEEEEe
Q 017997 2 VKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVD 33 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la-~~~~G~~V~~~d 33 (362)
.+|+|-|.|.||..+|..|+ +. |..|++++
T Consensus 32 ~~vaIqG~GnVG~~~a~~L~~e~--Ga~vv~vs 62 (234)
T d1b26a1 32 ATVAVQGFGNVGQFAALLISQEL--GSKVVAVS 62 (234)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHH--CCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhc--CCceEEee
Confidence 47999999999999999997 56 88888775
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.96 E-value=0.12 Score=41.44 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=28.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
.+|.|||.|..|+.-|..+++. |.+|+++|..
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~--g~~v~vie~~ 37 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARA--ELKPLLFEGW 37 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT--TCCCEEECCS
T ss_pred ceEEEECCCHHHHHHHHHHHHc--CCcEEEEEee
Confidence 4799999999999999999998 9999999853
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.75 E-value=0.15 Score=44.67 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=27.8
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
||-|.| .|++|..++..|.++ ||+|+++|+
T Consensus 4 KILITG~tGfIGs~lv~~Ll~~--g~~V~~ld~ 34 (346)
T d1ek6a_ 4 KVLVTGGAGYIGSHTVLELLEA--GYLPVVIDN 34 (346)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred eEEEECCCcHHHHHHHHHHHHC--cCEEEEEEC
Confidence 799997 699999999999999 999999985
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=89.73 E-value=0.13 Score=42.33 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=29.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
-|.|||.|.-|++.|..+++. |++|++++.++
T Consensus 8 DviIIG~GPaGlsaA~~aa~~--G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADE--GLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCeEEEEeccC
Confidence 478999999999999999999 99999999753
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.72 E-value=1.1 Score=35.93 Aligned_cols=97 Identities=19% Similarity=0.112 Sum_probs=56.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh---hcCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH---VSEA 79 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a---~~~a 79 (362)
+|-=||||.-. ++..|++. |.+|+++|++++.++..++.- ............|..+. -...
T Consensus 40 ~ILDiGcG~G~--~~~~la~~--~~~v~giD~S~~~i~~ak~~~------------~~~~~~~~~~~~d~~~l~~~~~~f 103 (226)
T d1ve3a1 40 KVLDLACGVGG--FSFLLEDY--GFEVVGVDISEDMIRKAREYA------------KSRESNVEFIVGDARKLSFEDKTF 103 (226)
T ss_dssp EEEEETCTTSH--HHHHHHHT--TCEEEEEESCHHHHHHHHHHH------------HHTTCCCEEEECCTTSCCSCTTCE
T ss_pred EEEEECCCcch--hhhhHhhh--hcccccccccccchhhhhhhh------------ccccccccccccccccccccCcCc
Confidence 57789999854 55678887 899999999999887665310 00000011122333221 1345
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
|+|+.. -. .. -.....+..+++.+.+.|+||..+++
T Consensus 104 D~I~~~-~~-l~--------~~~~~d~~~~l~~i~~~LkpgG~lii 139 (226)
T d1ve3a1 104 DYVIFI-DS-IV--------HFEPLELNQVFKEVRRVLKPSGKFIM 139 (226)
T ss_dssp EEEEEE-SC-GG--------GCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEEe-cc-hh--------hCChhHHHHHHHHHHHHcCcCcEEEE
Confidence 776654 21 11 11123456789999999998765433
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=89.66 E-value=0.16 Score=40.24 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=33.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
.+|-.+|||.=- .+..||++ |++|+++|++++.++..++
T Consensus 22 ~rvLd~GCG~G~--~a~~la~~--G~~V~gvD~S~~~i~~a~~ 60 (201)
T d1pjza_ 22 ARVLVPLCGKSQ--DMSWLSGQ--GYHVVGAELSEAAVERYFT 60 (201)
T ss_dssp CEEEETTTCCSH--HHHHHHHH--CCEEEEEEECHHHHHHHHH
T ss_pred CEEEEecCcCCH--HHHHHHHc--CCceEeecccHHHHHHHHH
Confidence 478899999764 66789998 9999999999999988765
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=89.57 E-value=0.14 Score=40.32 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=27.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
.|.|||.|..|+..|..+++. |.+|++++++
T Consensus 3 DViIIGgGpaGl~AAi~aar~--G~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARK--GIRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTT--TCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHc--CCeEEEEEEe
Confidence 589999999999999998888 9999999863
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=89.52 E-value=0.14 Score=44.98 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=28.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
-+.|||.|.-|+.+|..|+++ |++|++++.
T Consensus 6 DviIVGsG~aG~v~A~~La~~--G~kVlvLEa 35 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGA--GYKVAMFDI 35 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECS
T ss_pred cEEEECcCHHHHHHHHHHhhC--CCeEEEEec
Confidence 489999999999999999998 999999985
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=89.45 E-value=0.31 Score=41.07 Aligned_cols=76 Identities=12% Similarity=0.232 Sum_probs=51.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.||+||| ++ |....+.+. |.+++++|+|+. .+ .. ..+..++.+.+||+
T Consensus 123 ~kV~vIG--~~--P~v~~l~~~--~~~~~VlE~~p~------~g-------------------d~-p~~~~~~lLp~aD~ 170 (251)
T d2h1qa1 123 KKVGVVG--HF--PHLESLLEP--ICDLSILEWSPE------EG-------------------DY-PLPASEFILPECDY 170 (251)
T ss_dssp SEEEEES--CC--TTHHHHHTT--TSEEEEEESSCC------TT-------------------CE-EGGGHHHHGGGCSE
T ss_pred CEEEEEe--cc--hhHHHHHhc--CCcEEEEeCCCC------CC-------------------CC-CchHHHHhhhcCCE
Confidence 4899996 55 777777777 899999999852 11 11 12334567899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
||++=- +.+...++.|.++.++...|+.
T Consensus 171 viiTGs----------------TlvN~Tl~~LL~~~~~a~~vvl 198 (251)
T d2h1qa1 171 VYITCA----------------SVVDKTLPRLLELSRNARRITL 198 (251)
T ss_dssp EEEETH----------------HHHHTCHHHHHHHTTTSSEEEE
T ss_pred EEEEec----------------hhhcCCHHHHHHhCCcCCEEEE
Confidence 999832 2344567778888777765543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.43 E-value=0.31 Score=38.20 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=32.3
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+ |.+|.......... |.+|++.+.++++.+.+++
T Consensus 31 ~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~ 71 (174)
T d1yb5a2 31 SVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ 71 (174)
T ss_dssp EEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred EEEEEecccccccccccccccc--Ccccccccccccccccccc
Confidence 6899995 99998665555455 8999999999998887765
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.40 E-value=0.3 Score=42.54 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=27.6
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
++|-|.| .|++|..++..|.+. ||+|+++|+
T Consensus 17 k~iLVTG~tGfIGs~lv~~L~~~--g~~V~~~d~ 48 (341)
T d1sb8a_ 17 KVWLITGVAGFIGSNLLETLLKL--DQKVVGLDN 48 (341)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred CEEEEecCCCHHHHHHHHHHHHC--cCEEEEEEC
Confidence 3677776 799999999999999 999999996
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.36 E-value=0.19 Score=43.31 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=29.1
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.+|-|.| .|++|..++..|.++ ||+|+++|+..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~--g~~V~~~~r~~ 34 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEK--GYRVHGLVARR 34 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEECCC
Confidence 3677887 699999999999999 99999999863
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=89.31 E-value=0.15 Score=44.96 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=28.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
-|-|||.|+-|+.+|..|+++ |++|.++++
T Consensus 4 ~VIVVGsG~aG~v~A~rLaea--G~~VlvLEa 33 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEA--GVQTLMLEM 33 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCEEEEES
T ss_pred eEEEeCcCHHHHHHHHHHHHC--cCeEEEEec
Confidence 478999999999999999999 999999987
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.28 E-value=1.2 Score=36.47 Aligned_cols=97 Identities=19% Similarity=0.181 Sum_probs=59.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhh-h-cCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKH-V-SEA 79 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a-~-~~a 79 (362)
+|-=||||. |. ++..|++. |++|+|+|.+++-++..++.. .+ ...++.+ ..|..+. . ...
T Consensus 44 ~iLDiGcGt-G~-~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~------------~~-~~~~i~~~~~d~~~l~~~~~f 106 (251)
T d1wzna1 44 RVLDLACGT-GI-PTLELAER--GYEVVGLDLHEEMLRVARRKA------------KE-RNLKIEFLQGDVLEIAFKNEF 106 (251)
T ss_dssp EEEEETCTT-CH-HHHHHHHT--TCEEEEEESCHHHHHHHHHHH------------HH-TTCCCEEEESCGGGCCCCSCE
T ss_pred EEEEeCCCC-Cc-cchhhccc--ceEEEEEeecccccccccccc------------cc-ccccchheehhhhhccccccc
Confidence 577899997 43 45678888 899999999998888766420 00 0012222 2333321 1 245
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
|+|+.+-.+ .. -.+......+++.+.++|++|.++++
T Consensus 107 D~I~~~~~~-~~--------~~~~~~~~~~L~~~~~~LkpgG~lii 143 (251)
T d1wzna1 107 DAVTMFFST-IM--------YFDEEDLRKLFSKVAEALKPGGVFIT 143 (251)
T ss_dssp EEEEECSSG-GG--------GSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred chHhhhhhh-hh--------cCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 776664221 10 12334567889999999999876654
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.18 E-value=0.16 Score=38.43 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=28.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHc--CCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALK--CPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~--~~G~~V~~~d~~~ 36 (362)
.+|.|||.|++|.-+|..|++. ..|.+|+++++++
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~ 74 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK 74 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence 4799999999999999988631 1278999998753
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=89.12 E-value=1.7 Score=35.92 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=27.4
Q ss_pred EEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 017997 4 ICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (362)
Q Consensus 4 I~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~ 38 (362)
++|| | .+.+|..+|..|+++ |++|++.|++.++
T Consensus 3 vAlVTGas~GIG~aia~~la~~--G~~Vvi~~r~~~~ 37 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQ--GFRVVVHYRHSEG 37 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCchH
Confidence 4555 4 567999999999999 9999999998554
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=89.12 E-value=0.16 Score=41.49 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=28.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
.|.|||.|..|+..|..+++. |.+|++++.+
T Consensus 7 DlvVIG~GpaGl~aA~~aa~~--G~~V~liE~~ 37 (220)
T d1lvla1 7 TLLIIGGGPGGYVAAIRAGQL--GIPTVLVEGQ 37 (220)
T ss_dssp SEEEECCSHHHHHHHHHHHHH--TCCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCcEEEEecC
Confidence 488999999999999999999 9999999865
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=89.10 E-value=0.17 Score=44.92 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=27.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCe-EEEEeC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIE-VAVVDI 34 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~-V~~~d~ 34 (362)
|||-|.| +|++|..++..|+++ ||+ |+++|.
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~--g~~vv~~~d~ 33 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKN--TQDTVVNIDK 33 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHH--CSCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCCEEEEEeC
Confidence 7999997 699999999999999 886 667775
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.04 E-value=0.35 Score=42.20 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=25.7
Q ss_pred EEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 4 ICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 4 I~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
|-|.| .|++|..++..|.++ ||+|+++|+
T Consensus 4 ILVTGatGfIG~~lv~~Ll~~--g~~V~~~d~ 33 (347)
T d1z45a2 4 VLVTGGAGYIGSHTVVELIEN--GYDCVVADN 33 (347)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred EEEeCCCcHHHHHHHHHHHHC--cCeEEEEEC
Confidence 55665 799999999999999 999999985
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=88.98 E-value=0.13 Score=42.60 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=29.1
Q ss_pred eEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 017997 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (362)
Q Consensus 3 kI~VI--GlG~~G~~lA~~la~~~~G~~V~~~d~~~~~ 38 (362)
|+++| |.+.+|..+|..|++. |++|++.|++++.
T Consensus 2 K~alITGas~GIG~aiA~~la~~--Ga~V~i~~~~~~~ 37 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKAR--GYRVVVLDLRREG 37 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--TCEEEEEESSCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCccc
Confidence 56666 4689999999999999 9999999998654
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=88.94 E-value=0.12 Score=44.88 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=29.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
-|.|||.|.-|+..|..++++ |++|++++..+
T Consensus 25 DVvVIG~G~aGl~aA~~la~~--G~~V~llEk~~ 56 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDA--GAKVILLEKEP 56 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTT--TCCEEEECSSS
T ss_pred eEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence 389999999999999999999 99999999753
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=88.85 E-value=0.14 Score=40.72 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=28.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
+|.|||.|..|+.-|..+++. |.+|+++++..
T Consensus 7 dVvIIGGGpaGl~AA~~~ar~--g~~v~iie~~~ 38 (190)
T d1trba1 7 KLLILGSGPAGYTAAVYAARA--NLQPVLITGME 38 (190)
T ss_dssp EEEEECCSHHHHHHHHHHHTT--TCCCEEECCSS
T ss_pred cEEEECCCHHHHHHHHHHHHc--CCceEEEEeec
Confidence 699999999999988888888 99999998653
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=88.76 E-value=0.95 Score=39.24 Aligned_cols=116 Identities=15% Similarity=0.049 Sum_probs=64.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEE-EecCHHhh------
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF-FSTDVEKH------ 75 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~-~t~d~~~a------ 75 (362)
+|-=+++|.=|.+++ ++.. +.+|+++|.++..++..++.- +.....+.+ ...|..+.
T Consensus 148 rVLDl~~gtG~~s~~--~a~g--~~~V~~vD~s~~al~~a~~n~------------~~ngl~~~~~i~~d~~~~~~~~~~ 211 (318)
T d1wxxa2 148 RALDVFSYAGGFALH--LALG--FREVVAVDSSAEALRRAEENA------------RLNGLGNVRVLEANAFDLLRRLEK 211 (318)
T ss_dssp EEEEETCTTTHHHHH--HHHH--EEEEEEEESCHHHHHHHHHHH------------HHTTCTTEEEEESCHHHHHHHHHH
T ss_pred eeeccCCCCcHHHHH--HHhc--CCcEEeecchHHHHHHHHHHH------------HHcCCCCcceeeccHHHHhhhhHh
Confidence 344456777666554 4555 789999999999998776420 000001232 23343221
Q ss_pred -hcCCcEEEEeccCCCCCCCCCCCCCCChH----HHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHH
Q 017997 76 -VSEADIVFVSVNTPTKTQGLGAGKAADLT----YWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKIL 141 (362)
Q Consensus 76 -~~~aDvVii~vptp~~~~g~~~~~~~d~~----~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l 141 (362)
-...|+|++-.|.-... ..++. ...+.+....+.++||-+++.+|..+.-+.+.+.+.+
T Consensus 212 ~~~~fD~Vi~DpP~~~~~-------~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v 275 (318)
T d1wxxa2 212 EGERFDLVVLDPPAFAKG-------KKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMV 275 (318)
T ss_dssp TTCCEEEEEECCCCSCCS-------TTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred hhcCCCEEEEcCCccccc-------hHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHH
Confidence 13689999986643211 22332 2234555667778998888776654433444444443
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.72 E-value=0.21 Score=40.54 Aligned_cols=30 Identities=27% Similarity=0.199 Sum_probs=28.1
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
+.|||.|..|+..|..+++. |.+|.++|.+
T Consensus 6 viIIG~GpaG~~aA~~aar~--G~kV~vIEk~ 35 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAEL--GARAAVVESH 35 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHC--CCEEEEEecc
Confidence 78999999999999999999 9999999864
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=88.58 E-value=0.21 Score=43.06 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=27.3
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
||-|.| .|++|..+...|.++ ||+|+++|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~--g~~V~~id~ 32 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQ--GIDLIVFDN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHC--cCEEEEEEC
Confidence 788886 699999999999999 999999984
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.52 E-value=0.21 Score=43.54 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=28.8
Q ss_pred ceEE-EEc-CChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKIC-CIG-AGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~-VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.||+ |.| .|++|..++..|.++ ||+|+++|+..
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~--g~~V~~i~r~~ 35 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEK--GYEVHGIVRRS 35 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHC--cCEEEEEECCC
Confidence 4785 666 699999999999999 99999999854
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.39 E-value=0.14 Score=42.20 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=28.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
-|.|||.|.-|+..|..+++. |++|.++|..
T Consensus 5 DviVIG~GpaGl~aA~~aa~~--G~kV~viE~~ 35 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKF--DKKVMVLDFV 35 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGG--CCCEEEECCC
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCeEEEEecc
Confidence 478999999999999999999 9999999854
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=88.30 E-value=1.2 Score=36.83 Aligned_cols=36 Identities=17% Similarity=0.059 Sum_probs=28.6
Q ss_pred EEEEcC-C--hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH
Q 017997 4 ICCIGA-G--YVGGPTMAVIALKCPSIEVAVVDISVSRINA 41 (362)
Q Consensus 4 I~VIGl-G--~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~ 41 (362)
+-|-|+ | -+|..+|..|++. |++|++.+++++..+.
T Consensus 11 alITGas~~~GIG~aiA~~la~~--Ga~V~i~~~~~~~~~~ 49 (256)
T d1ulua_ 11 ALVMGVTNQRSLGFAIAAKLKEA--GAEVALSYQAERLRPE 49 (256)
T ss_dssp EEEESCCCSSSHHHHHHHHHHHT--TCEEEEEESSGGGHHH
T ss_pred EEEECCCCCchHHHHHHHHHHHC--CCEEEEEeCcHHHHHH
Confidence 445576 4 5999999999999 9999999998654443
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=88.22 E-value=1.4 Score=33.88 Aligned_cols=70 Identities=20% Similarity=0.328 Sum_probs=49.0
Q ss_pred ceEEEEcC--ChhHHHHHHHHHHcCCCCeEEEEeCC-----HHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh
Q 017997 2 VKICCIGA--GYVGGPTMAVIALKCPSIEVAVVDIS-----VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (362)
Q Consensus 2 mkI~VIGl--G~~G~~lA~~la~~~~G~~V~~~d~~-----~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (362)
.||++||= ..|-.++...+++- |.++++.-.. ++..+...+ ... ...+.+.+++|+++
T Consensus 4 ~ki~~vGD~~nnV~~Sli~~~~~~--g~~i~~~~P~~~~~~~~~~~~~~~------------~~~-~~~~~i~~~~d~~~ 68 (161)
T d1vlva2 4 VKVVFMGDTRNNVATSLMIACAKM--GMNFVACGPEELKPRSDVFKRCQE------------IVK-ETDGSVSFTSNLEE 68 (161)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHT--TCEEEEESCGGGCCCHHHHHHHHH------------HHH-HHCCEEEEESCHHH
T ss_pred CEEEEEcCCccHHHHHHHHHHHHc--CCEEEEecchhhhhhhhHHHHHHH------------HHh-hcCCceEEEecHHH
Confidence 48999994 46888888888887 8999887642 222222111 000 12456899999999
Q ss_pred hhcCCcEEEEec
Q 017997 75 HVSEADIVFVSV 86 (362)
Q Consensus 75 a~~~aDvVii~v 86 (362)
+++++|+|..-.
T Consensus 69 ai~~aDviyt~~ 80 (161)
T d1vlva2 69 ALAGADVVYTDV 80 (161)
T ss_dssp HHTTCSEEEECC
T ss_pred hhhhhhheeccc
Confidence 999999998764
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.16 E-value=0.24 Score=42.92 Aligned_cols=31 Identities=19% Similarity=0.041 Sum_probs=26.7
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
++-|.| .|++|..++..|.++ ||+|+++|+.
T Consensus 3 ~~LVTGatGfiG~~lv~~Ll~~--g~~V~~~~r~ 34 (339)
T d1n7ha_ 3 IALITGITGQDGSYLTEFLLGK--GYEVHGLIRR 34 (339)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred EEEEeCCccHHHHHHHHHHHHC--cCEEEEEECC
Confidence 344555 799999999999999 9999999984
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=87.79 E-value=0.31 Score=40.94 Aligned_cols=39 Identities=10% Similarity=0.093 Sum_probs=31.4
Q ss_pred eEEEEcC-Ch--hHHHHHHHHHHcCCCCeEEEEeCCHHHH-HHHH
Q 017997 3 KICCIGA-GY--VGGPTMAVIALKCPSIEVAVVDISVSRI-NAWN 43 (362)
Q Consensus 3 kI~VIGl-G~--~G~~lA~~la~~~~G~~V~~~d~~~~~~-~~l~ 43 (362)
++-|.|+ |. +|..+|..|++. |.+|++.+++.++. +++.
T Consensus 8 ~~lItGaag~~GIG~aiA~~la~~--Ga~Vil~~~~~~~~~~~~~ 50 (268)
T d2h7ma1 8 RILVSGIITDSSIAFHIARVAQEQ--GAQLVLTGFDRLRLIQRIT 50 (268)
T ss_dssp EEEECCCSSTTCHHHHHHHHHHHT--TCEEEEEECSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc--CCEEEEEeCChHHHHHHHH
Confidence 5667785 54 999999999999 99999999987765 3344
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.76 E-value=0.26 Score=39.81 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=28.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
.|.|||.|..|+..|..+++. |.+|.+++..
T Consensus 5 DviVIG~GpaGl~aA~~aar~--G~kV~vIEk~ 35 (223)
T d1ebda1 5 ETLVVGAGPGGYVAAIRAAQL--GQKVTIVEKG 35 (223)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCEEEEEecC
Confidence 478999999999999999999 9999999875
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=87.75 E-value=0.076 Score=42.18 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=25.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
+|.|||.|..|..+|..|.+. |++|.++.+
T Consensus 5 ~VvIIGgG~~G~e~A~~l~~~--g~~v~i~~~ 34 (183)
T d1d7ya1 5 PVVVLGAGLASVSFVAELRQA--GYQGLITVV 34 (183)
T ss_dssp SEEEECCSHHHHHHHHHHHHH--TCCSCEEEE
T ss_pred CEEEECccHHHHHHHHHHHhc--CCceEEEEE
Confidence 699999999999999999998 776655544
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=87.65 E-value=0.91 Score=37.33 Aligned_cols=98 Identities=11% Similarity=0.071 Sum_probs=59.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEE-EecCHHhh--hcCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF-FSTDVEKH--VSEA 79 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~-~t~d~~~a--~~~a 79 (362)
+|-=||||.=- ++..|++. |.+|+|+|.+++-++..++... .. ..+++ ...|..+. -+..
T Consensus 40 ~vLDiGCG~G~--~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~---~~----------~~~v~~~~~d~~~~~~~~~f 102 (246)
T d1y8ca_ 40 DYLDLACGTGN--LTENLCPK--FKNTWAVDLSQEMLSEAENKFR---SQ----------GLKPRLACQDISNLNINRKF 102 (246)
T ss_dssp EEEEETCTTST--THHHHGGG--SSEEEEECSCHHHHHHHHHHHH---HT----------TCCCEEECCCGGGCCCSCCE
T ss_pred eEEEEeCcCCH--HHHHHHHh--CCccEeeccchhhhhhcccccc---cc----------Cccceeeccchhhhcccccc
Confidence 57778998433 56678888 8999999999998876553100 00 01122 22343321 1356
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
|+|+.... ... .-++...+..+++.+.++|+++-+++.
T Consensus 103 D~i~~~~~-~~~-------~~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 103 DLITCCLD-STN-------YIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp EEEEECTT-GGG-------GCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cccceeee-eee-------ccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 88775422 111 123445678899999999998776654
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=87.57 E-value=3.7 Score=34.51 Aligned_cols=144 Identities=14% Similarity=0.151 Sum_probs=74.5
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhh--cCCc
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV--SEAD 80 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~--~~aD 80 (362)
|-=+|+|.-- ++..++...|..+|+++|++++.++..+++. +.....++.+ .+|.-+.+ ...|
T Consensus 112 vlDlGtGSG~--I~i~la~~~p~~~v~avDis~~Al~~A~~Na------------~~~~~~~v~~~~~d~~~~~~~~~fD 177 (274)
T d2b3ta1 112 ILDLGTGTGA--IALALASERPDCEIIAVDRMPDAVSLAQRNA------------QHLAIKNIHILQSDWFSALAGQQFA 177 (274)
T ss_dssp EEEETCTTSH--HHHHHHHHCTTSEEEEECSSHHHHHHHHHHH------------HHHTCCSEEEECCSTTGGGTTCCEE
T ss_pred eeeeehhhhH--HHHHHHhhCCcceeeeccchhHHHhHHHHHH------------HHhCcccceeeecccccccCCCcee
Confidence 4344554432 2333444445789999999999888665421 0011123432 34444334 3588
Q ss_pred EEEEeccCCCCCCCC----C-CCCCC---------ChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC
Q 017997 81 IVFVSVNTPTKTQGL----G-AGKAA---------DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK 146 (362)
Q Consensus 81 vVii~vptp~~~~g~----~-~~~~~---------d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~ 146 (362)
+|+..-| ....... . ....| -+..++..++....+|+++..++.+ +.....+.+.+.+.+.+
T Consensus 178 lIvsNPP-Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE--ig~~q~~~v~~~l~~~g- 253 (274)
T d2b3ta1 178 MIVSNPP-YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE--HGWQQGEAVRQAFILAG- 253 (274)
T ss_dssp EEEECCC-CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE--CCSSCHHHHHHHHHHTT-
T ss_pred EEEecch-hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE--ECchHHHHHHHHHHHCC-
Confidence 8866533 1111000 0 00011 1245566777777888877666554 33445566777776542
Q ss_pred CCceEEeeCCcccccCccccccCCCCeEEEe
Q 017997 147 GIKFQILSNPEFLAEGTAIQDLFNPDRVLIG 177 (362)
Q Consensus 147 g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG 177 (362)
|. .-....|+...+|+++|
T Consensus 254 ---f~---------~i~~~kDl~g~~R~v~~ 272 (274)
T d2b3ta1 254 ---YH---------DVETCRDYGDNERVTLG 272 (274)
T ss_dssp ---CT---------TCCEEECTTSSEEEEEE
T ss_pred ---CC---------eEEEEECCCCCceEEEE
Confidence 20 01234566777788766
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=87.57 E-value=0.34 Score=40.71 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=30.2
Q ss_pred eEEEE--cCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHH
Q 017997 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWN 43 (362)
Q Consensus 3 kI~VI--GlG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~~~l~ 43 (362)
|+++| |.+.+|..+|..|++. |++|++. +++++..+.+.
T Consensus 7 K~alITGas~GIG~aia~~la~~--G~~Vvi~~~~~~~~~~~~~ 48 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRR--GASVVVNYGSSSKAAEEVV 48 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEcCCChHHHHHHH
Confidence 45555 5688999999999999 9999874 66766666554
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=87.38 E-value=0.44 Score=32.25 Aligned_cols=41 Identities=27% Similarity=0.251 Sum_probs=31.2
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++|.|.|. |.+|......+... |++|++...++++.+.+++
T Consensus 33 ~~vlI~gasGgVG~~aiQlak~~--G~~Vi~~t~s~~k~~~~~~ 74 (77)
T d1o8ca2 33 GEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKS 74 (77)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH
T ss_pred CcEEEEeCCCcHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHH
Confidence 35778765 99998655544444 9999999999999887764
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.32 E-value=0.78 Score=38.13 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=24.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV 32 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~ 32 (362)
++|+|-|.|.||..+|..|++.. |..|+++
T Consensus 33 ~~v~IqGfGnVG~~~a~~L~~~~-G~kvv~v 62 (239)
T d1gtma1 33 KTIAIQGYGNAGYYLAKIMSEDF-GMKVVAV 62 (239)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhc-Ccceeec
Confidence 47999999999999999987532 7777765
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=87.15 E-value=0.85 Score=36.89 Aligned_cols=96 Identities=11% Similarity=0.020 Sum_probs=56.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-cCHHhh---hc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKH---VS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a---~~ 77 (362)
++|-=||||.=. ++..+++. |.+|+++|++++-++..++.. ......++.+. .|..+. -.
T Consensus 17 ~rVLDiGcG~G~--~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~------------~~~~~~~i~~~~~d~~~l~~~~~ 80 (231)
T d1vl5a_ 17 EEVLDVATGGGH--VANAFAPF--VKKVVAFDLTEDILKVARAFI------------EGNGHQQVEYVQGDAEQMPFTDE 80 (231)
T ss_dssp CEEEEETCTTCH--HHHHHGGG--SSEEEEEESCHHHHHHHHHHH------------HHTTCCSEEEEECCC-CCCSCTT
T ss_pred CEEEEecccCcH--HHHHHHHh--CCEEEEEECCHHHHhhhhhcc------------ccccccccccccccccccccccc
Confidence 478889999443 34567888 889999999998887654310 00001223321 222221 13
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
..|+|+..- . .. .-+| ...+++.+.+.|+||..+++
T Consensus 81 ~fD~v~~~~-~-l~-------~~~d---~~~~l~~~~r~LkpgG~l~i 116 (231)
T d1vl5a_ 81 RFHIVTCRI-A-AH-------HFPN---PASFVSEAYRVLKKGGQLLL 116 (231)
T ss_dssp CEEEEEEES-C-GG-------GCSC---HHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccc-c-cc-------ccCC---HHHHHHHHHHhcCCCcEEEE
Confidence 568776552 1 11 0223 35778999999998875544
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.07 E-value=1.8 Score=33.30 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=46.5
Q ss_pred ceEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeC-----CHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDI-----SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~la~~~~G~~V~~~d~-----~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
.||+++|-| .|..+++..+..- |.+|+++.. +++.++.+.+. .....+.+..+.|+.++
T Consensus 5 l~Ia~VGD~~nv~~Sli~~l~~~--g~~v~~~~P~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~d~~ea 69 (163)
T d1pvva2 5 VKVVYVGDGNNVAHSLMIAGTKL--GADVVVATPEGYEPDEKVIKWAEQN-------------AAESGGSFELLHDPVKA 69 (163)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHT--TCEEEEECCTTCCCCHHHHHHHHHH-------------HHHHTCEEEEESCHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCeEEEecccccCCChHHHHHHHHh-------------hhcccceEEEecCHHHH
Confidence 489999964 4666777777776 899998854 33333333220 00123567889999999
Q ss_pred hcCCcEEEEe
Q 017997 76 VSEADIVFVS 85 (362)
Q Consensus 76 ~~~aDvVii~ 85 (362)
++++|+|..-
T Consensus 70 ~~~adviy~~ 79 (163)
T d1pvva2 70 VKDADVIYTD 79 (163)
T ss_dssp TTTCSEEEEC
T ss_pred hhhccEEeec
Confidence 9999988864
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=86.99 E-value=0.24 Score=43.72 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=27.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
-+-|||.|.-|+.+|..|+++ |++|+++++
T Consensus 9 dvIVVGsG~aG~v~A~rLaea--G~~VlvLEa 38 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQA--GIPTQIVEM 38 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCEEEECS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCeEEEEeC
Confidence 367999999999999999998 999999986
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=86.76 E-value=0.3 Score=40.77 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=28.9
Q ss_pred eEEEEcC-C--hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 3 KICCIGA-G--YVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 3 kI~VIGl-G--~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
+|-|-|. | .+|..+|..|++. |++|++.+++++..+.+
T Consensus 7 ~~lITGass~~GIG~aiA~~l~~~--G~~V~i~~~~~~~~~~~ 47 (258)
T d1qsga_ 7 RILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRV 47 (258)
T ss_dssp EEEECCCCSTTSHHHHHHHHHHHT--TCEEEEEESSTTTHHHH
T ss_pred EEEEECCCCchhHHHHHHHHHHHc--CCEEEEEeCCHHHHHHH
Confidence 3445565 4 4889999999999 99999999986544433
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.45 E-value=1.6 Score=36.92 Aligned_cols=102 Identities=10% Similarity=0.071 Sum_probs=61.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEE-EecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF-FSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~-~t~d~~~a~~~aD 80 (362)
++|-=||||.=|. +..+++.. |.+|+++|++++.++..++.. .+.++ ..++. ...|..+.-...|
T Consensus 54 ~~VLDiGCG~G~~--a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~---~~~~l--------~~~~~~~~~d~~~~~~~fD 119 (280)
T d2fk8a1 54 MTLLDIGCGWGTT--MRRAVERF-DVNVIGLTLSKNQHARCEQVL---ASIDT--------NRSRQVLLQGWEDFAEPVD 119 (280)
T ss_dssp CEEEEESCTTSHH--HHHHHHHH-CCEEEEEESCHHHHHHHHHHH---HTSCC--------SSCEEEEESCGGGCCCCCS
T ss_pred CEEEEecCCchHH--HHHHHHhC-ceeEEEecchHHHHHHHHHHH---Hhhcc--------ccchhhhhhhhhhhccchh
Confidence 4778899998774 55566543 789999999999887665410 01111 12233 2345555334667
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEee
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~S 127 (362)
.|+.. -. ... ...+.....++.+...|+|+-.+++.+
T Consensus 120 ~i~si-~~-~eh--------~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 120 RIVSI-EA-FEH--------FGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp EEEEE-SC-GGG--------TCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhHh-hH-HHH--------hhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 77544 11 111 111235678899999999987775543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.39 E-value=1.8 Score=36.34 Aligned_cols=95 Identities=9% Similarity=0.101 Sum_probs=54.8
Q ss_pred ceEEEEcCChhH--HHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhh---
Q 017997 2 VKICCIGAGYVG--GPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKH--- 75 (362)
Q Consensus 2 mkI~VIGlG~~G--~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a--- 75 (362)
|+|.=+|+|.=. ..+|..+.. +-+|+.+|++++.++..++.. ..... ....++.+ ..|..+.
T Consensus 98 ~~VLE~G~GsG~lt~~La~~vgp---~G~V~~~d~~~~~~~~Ar~n~--------~~~~~-~~~~nv~~~~~d~~~~~~~ 165 (264)
T d1i9ga_ 98 ARVLEAGAGSGALTLSLLRAVGP---AGQVISYEQRADHAEHARRNV--------SGCYG-QPPDNWRLVVSDLADSELP 165 (264)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCT---TSEEEEECSCHHHHHHHHHHH--------HHHHT-SCCTTEEEECSCGGGCCCC
T ss_pred CEEEecCcCCcHHHHHHHHhhCC---CcEEEEecCCHHHHHHHHHhh--------hhhcc-CCCceEEEEeccccccccc
Confidence 345556665544 444444433 458999999999998776421 11000 01123332 2233321
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
-...|.||+-+|.|. ++++.+.+.|+++..++.
T Consensus 166 ~~~fDaV~ldlp~P~-----------------~~l~~~~~~LkpGG~lv~ 198 (264)
T d1i9ga_ 166 DGSVDRAVLDMLAPW-----------------EVLDAVSRLLVAGGVLMV 198 (264)
T ss_dssp TTCEEEEEEESSCGG-----------------GGHHHHHHHEEEEEEEEE
T ss_pred CCCcceEEEecCCHH-----------------HHHHHHHhccCCCCEEEE
Confidence 246799999998773 356677788888876654
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=86.23 E-value=0.33 Score=39.16 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=28.1
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
|.|||.|.-|+.-|..+++. |.+|.++|..
T Consensus 6 viIIGgGpAGl~aA~~aar~--G~~V~viE~~ 35 (229)
T d3lada1 6 VIVIGAGPGGYVAAIKSAQL--GLKTALIEKY 35 (229)
T ss_dssp EEEECCSHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred EEEECcCHHHHHHHHHHHHC--CCeEEEEecc
Confidence 78999999999999999999 9999999964
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=86.21 E-value=0.091 Score=45.75 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=23.6
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEE
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVA 30 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~ 30 (362)
|||-|.| .|++|..++..|.++ ||+|.
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~--g~~v~ 28 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAG--AYPDV 28 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--SCTTS
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCCcc
Confidence 8999997 799999999999998 77543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=86.18 E-value=4.5 Score=32.22 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=61.4
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-cC---HHh--hhc
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TD---VEK--HVS 77 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d---~~~--a~~ 77 (362)
|-=||||.=... ..+|+..|...++|+|+++..+..+.+. ..+....++.+. .| +.+ .-.
T Consensus 35 vLdIGcG~G~~~--~~lA~~~p~~~~iGid~~~~~v~~a~~~------------~~~~~l~Ni~~~~~da~~l~~~~~~~ 100 (204)
T d1yzha1 35 HVEVGSGKGAFV--SGMAKQNPDINYIGIDIQKSVLSYALDK------------VLEVGVPNIKLLWVDGSDLTDYFEDG 100 (204)
T ss_dssp EEEESCTTSHHH--HHHHHHCTTSEEEEEESCHHHHHHHHHH------------HHHHCCSSEEEEECCSSCGGGTSCTT
T ss_pred EEEEeccCCHHH--HHHHHHCCCCceEEEeccHHHHHHHHHh------------hhhhccccceeeecCHHHHhhhccCC
Confidence 445899987643 4566666789999999999877765431 000111234321 22 111 124
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEee
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~S 127 (362)
..|.|++.-|.|.-...--+.+-.. .+.++.+...|+++..+.+.|
T Consensus 101 ~~~~i~i~fPdPw~K~~h~krRl~~----~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 101 EIDRLYLNFSDPWPKKRHEKRRLTY----KTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCSEEEEESCCCCCSGGGGGGSTTS----HHHHHHHHHHSCTTCEEEEEE
T ss_pred ceehhcccccccccchhhhhhhhhH----HHHHHHHHHhCCCCcEEEEEE
Confidence 6788999888875331000000011 456788888999998886644
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.06 E-value=0.3 Score=43.74 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=29.0
Q ss_pred eEEEEcCChhHHHHHHHHHH------cCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIAL------KCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~------~~~G~~V~~~d~~~ 36 (362)
-|.|||.|.-|++.|..|++ + |++|.++|+..
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~--Gl~VlllEK~~ 71 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEK--DLRVCLVEKAA 71 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTC--CCCEEEECSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcC--CCEEEEEcCCC
Confidence 48999999999999999997 5 99999999864
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=85.71 E-value=1.5 Score=33.55 Aligned_cols=66 Identities=15% Similarity=0.311 Sum_probs=47.9
Q ss_pred ceEEEEcC---ChhHHHHHHHHHHcCCCCeEEEEeCC-----HHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHH
Q 017997 2 VKICCIGA---GYVGGPTMAVIALKCPSIEVAVVDIS-----VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (362)
Q Consensus 2 mkI~VIGl---G~~G~~lA~~la~~~~G~~V~~~d~~-----~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (362)
.||++||= +.+..+++..+..- |.+++.+... ++..+.+.+ ....+..++|++
T Consensus 5 l~i~~vGD~~~srV~~Sli~~~~~~--g~~~~~~~P~~~~~~~~~~~~~~~-----------------~~~~~~~~~d~~ 65 (157)
T d1ml4a2 5 LKIGLLGDLKYGRTVHSLAEALTFY--DVELYLISPELLRMPRHIVEELRE-----------------KGMKVVETTTLE 65 (157)
T ss_dssp EEEEEESCTTTCHHHHHHHHHGGGS--CEEEEEECCGGGCCCHHHHHHHHH-----------------TTCCEEEESCTH
T ss_pred CEEEEEcCCccChHHHHHHHHHHhc--CCcEEEEccchhhcchHHHHHHHh-----------------hcccceeecCHH
Confidence 48999997 57888999888877 8998887652 222222221 234578889999
Q ss_pred hhhcCCcEEEEec
Q 017997 74 KHVSEADIVFVSV 86 (362)
Q Consensus 74 ~a~~~aDvVii~v 86 (362)
++++++|+|..-.
T Consensus 66 ~av~~aDvvy~~~ 78 (157)
T d1ml4a2 66 DVIGKLDVLYVTR 78 (157)
T ss_dssp HHHTTCSEEEECC
T ss_pred HhhccCcEEEeec
Confidence 9999999877653
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=85.53 E-value=0.26 Score=42.66 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=29.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.|.|||.|.-|++.|..+++. |.+|++++..+
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~--G~~V~vlEK~~ 52 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKA--GANVILVDKAP 52 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHH--TCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence 489999999999999999999 99999999753
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=85.31 E-value=1.9 Score=35.48 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=31.9
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~ 44 (362)
.|-|-| .+-+|..+|..|++. |+ .|++..|++++++++++
T Consensus 5 tilITGassGIG~a~a~~la~~--G~~~~Vi~~~R~~~~~~~l~~ 47 (250)
T d1yo6a1 5 SVVVTGANRGIGLGLVQQLVKD--KNIRHIIATARDVEKATELKS 47 (250)
T ss_dssp EEEESSCSSHHHHHHHHHHHTC--TTCCEEEEEESSGGGCHHHHT
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--CCCCEEEEEeCCHHHHHHHHH
Confidence 344445 588999999999998 64 78889999988877764
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=85.30 E-value=2.4 Score=33.19 Aligned_cols=71 Identities=21% Similarity=0.392 Sum_probs=49.6
Q ss_pred ceEEEEcCC--hhHHHHHHHHHHcCCCCeEEEEeCC-----HHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh
Q 017997 2 VKICCIGAG--YVGGPTMAVIALKCPSIEVAVVDIS-----VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (362)
Q Consensus 2 mkI~VIGlG--~~G~~lA~~la~~~~G~~V~~~d~~-----~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (362)
.||+++|=| .|-.+++..++.- |.+++++-.. ++..+.+++ .. ......+.++.++++
T Consensus 6 l~i~~vGD~~nnv~~Sli~~~~~~--g~~l~~~~P~~~~~~~~~~~~~~~------------~~-~~~g~~~~~~~d~~~ 70 (183)
T d1duvg2 6 MTLVYAGDARNNMGNSMLEAAALT--GLDLRLVAPQACWPEAALVTECRA------------LA-QQNGGNITLTEDVAK 70 (183)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHH--CCEEEEECCGGGCCCHHHHHHHHH------------HH-HHTTCEEEEESCHHH
T ss_pred CEEEEEcCCccHHHHHHHHHHHHc--CCEEEEEechHhhhhHHHHHHHHH------------HH-HhcCCceEEEechhh
Confidence 489999955 6889999888888 8999988652 222222211 00 012356889999999
Q ss_pred hhcCCcEEEEecc
Q 017997 75 HVSEADIVFVSVN 87 (362)
Q Consensus 75 a~~~aDvVii~vp 87 (362)
+++++|+|..-+=
T Consensus 71 a~~~aDvvyt~~w 83 (183)
T d1duvg2 71 GVEGADFIYTDVW 83 (183)
T ss_dssp HHTTCSEEEECCS
T ss_pred ccccCCEEEEEeh
Confidence 9999999987653
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=85.02 E-value=0.31 Score=40.33 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=29.4
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
||-|.| .|.+|..+|..|+++ |++|+++|++++
T Consensus 4 kVlITGas~GIG~aia~~l~~~--G~~V~~~~~~~~ 37 (235)
T d1ooea_ 4 KVIVYGGKGALGSAILEFFKKN--GYTVLNIDLSAN 37 (235)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TEEEEEEESSCC
T ss_pred EEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCch
Confidence 787887 589999999999999 999999999754
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=84.90 E-value=0.22 Score=42.84 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=28.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
+||.|.| .|++|..++..|+++ ||.|++.|..
T Consensus 3 kkIlITG~tGfiG~~l~~~L~~~--g~~vi~~~~~ 35 (315)
T d1e6ua_ 3 QRVFIAGHRGMVGSAIRRQLEQR--GDVELVLRTR 35 (315)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC--TTEEEECCCT
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC--cCEEEEecCc
Confidence 4899997 699999999999999 9999988753
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=84.51 E-value=0.46 Score=39.69 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=28.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
.+.|||.|.-|...|..+++. |.+|.++|.+
T Consensus 3 DviVIG~G~aG~~aA~~aa~~--G~~V~liE~~ 33 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARH--NAKVALVEKS 33 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHHC--CCeEEEEecC
Confidence 478999999999999999999 9999999975
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=83.94 E-value=0.41 Score=42.25 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=28.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
-+.|||.|.-|+.+|..|+++ |++|.+++.-
T Consensus 4 D~IIVGsG~aG~v~A~rLae~--g~~VlvLEaG 34 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEA--GKKVLLLERG 34 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHhhC--CCeEEEEEcc
Confidence 368999999999999999998 9999999864
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.84 E-value=3.1 Score=33.53 Aligned_cols=40 Identities=15% Similarity=0.341 Sum_probs=31.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC-CCCeEEEEeCCHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC-PSIEVAVVDISVSRINA 41 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~-~G~~V~~~d~~~~~~~~ 41 (362)
+||.|||.|.-|..++..+.+.+ .+.+.+.+|.|.+.+..
T Consensus 16 ~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~ 56 (209)
T d2vapa1 16 AKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIR 56 (209)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHT
T ss_pred CcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhc
Confidence 48999999999999999998873 23467788888776653
|
| >d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.71 E-value=0.38 Score=38.90 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=31.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcC-CCCeEEEEeCCHHHHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKC-PSIEVAVVDISVSRIN 40 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~-~G~~V~~~d~~~~~~~ 40 (362)
+|-|||.|--|..++..+.+.+ .+.+.+.+|.|.+.+.
T Consensus 3 ~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~ 41 (198)
T d1ofua1 3 VIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALK 41 (198)
T ss_dssp CEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGS
T ss_pred eEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHh
Confidence 6899999999999999999873 2358888899887765
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=83.70 E-value=0.73 Score=35.96 Aligned_cols=40 Identities=8% Similarity=-0.139 Sum_probs=30.5
Q ss_pred eEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG-~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+| .+|....+..... |.+|++.++++++.+.+++
T Consensus 31 ~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~ 71 (179)
T d1qora2 31 QFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK 71 (179)
T ss_dssp EEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH
T ss_pred EEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHh
Confidence 68888654 5887555554455 8999999999999987764
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=83.56 E-value=0.27 Score=41.05 Aligned_cols=41 Identities=10% Similarity=0.007 Sum_probs=33.0
Q ss_pred CceEEEEcC-ChhHHHHHHHHH---HcCCCCeEEEEeCCHHHHHHHH
Q 017997 1 MVKICCIGA-GYVGGPTMAVIA---LKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la---~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
|++|-|-|+ ..+|..+|..|+ +. |++|++.+|++++++.+.
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~--g~~V~~~~r~~~~~~~~~ 46 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQP--PQHLFTTCRNREQAKELE 46 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSC--CSEEEEEESCTTSCHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHH
Confidence 556888886 789999998886 45 899999999987766543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=82.93 E-value=0.5 Score=36.96 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=31.7
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
+|.|.|. |.+|......+... |.+|++.++++++.+.+++
T Consensus 30 ~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~ 70 (171)
T d1iz0a2 30 KVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA 70 (171)
T ss_dssp EEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH
T ss_pred EEEEEeccccchhhhhhhhccc--ccccccccccccccccccc
Confidence 6889895 99998655544445 8999999999988887765
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=82.92 E-value=0.91 Score=36.90 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=56.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh---hcCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH---VSEA 79 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a---~~~a 79 (362)
+|-=||||. |. ++..|++. |++|+|+|.+++.++.+++..... . ...+..+. -..-
T Consensus 45 ~vLDiGcG~-G~-~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~----------------~-~~~~~~~l~~~~~~f 103 (246)
T d2avna1 45 RVLDLGGGT-GK-WSLFLQER--GFEVVLVDPSKEMLEVAREKGVKN----------------V-VEAKAEDLPFPSGAF 103 (246)
T ss_dssp EEEEETCTT-CH-HHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSC----------------E-EECCTTSCCSCTTCE
T ss_pred EEEEECCCC-ch-hccccccc--ceEEEEeecccccccccccccccc----------------c-ccccccccccccccc
Confidence 677789994 33 56678888 899999999999998887632111 1 11122210 1345
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
|+|+.+-.. . . ..+|. ..+++++.+.|++|.+++.
T Consensus 104 D~ii~~~~~-~-~------~~~d~---~~~l~~i~r~Lk~gG~~ii 138 (246)
T d2avna1 104 EAVLALGDV-L-S------YVENK---DKAFSEIRRVLVPDGLLIA 138 (246)
T ss_dssp EEEEECSSH-H-H------HCSCH---HHHHHHHHHHEEEEEEEEE
T ss_pred cceeeecch-h-h------hhhhH---HHHHHHHHhhcCcCcEEEE
Confidence 777654211 1 0 02232 4578899999999887755
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=82.72 E-value=7.4 Score=30.12 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=30.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHc--CCCCeEEEEe--CCHHHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALK--CPSIEVAVVD--ISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~--~~G~~V~~~d--~~~~~~~~l~ 43 (362)
|||+|=|.|.+|..+.+.+.+. .+..+|+.++ .+.+.+..+-
T Consensus 2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLl 47 (173)
T d1obfo1 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLT 47 (173)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHH
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhh
Confidence 7999999999999999888753 1356777776 4555555443
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=82.66 E-value=0.47 Score=40.96 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=28.6
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|.|||.|.-|++-|..++++ |.+|++++.++
T Consensus 8 VvVIG~G~AGl~AAl~aa~~--G~~V~liEK~~ 38 (336)
T d2bs2a2 8 SLVIGGGLAGLRAAVATQQK--GLSTIVLSLIP 38 (336)
T ss_dssp EEEECCSHHHHHHHHHHHTT--TCCEEEECSSC
T ss_pred EEEECcCHHHHHHHHHHHHC--CCCEEEEecCC
Confidence 88999999999999999999 99999998753
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=82.23 E-value=0.55 Score=34.60 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=30.4
Q ss_pred ceEEEEcCC-----------hhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 017997 2 VKICCIGAG-----------YVGGPTMAVIALKCPSIEVAVVDISVSR 38 (362)
Q Consensus 2 mkI~VIGlG-----------~~G~~lA~~la~~~~G~~V~~~d~~~~~ 38 (362)
.||-|||.| |.+...+..|.+. |++++.++-||+.
T Consensus 5 kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~--g~~~IliN~NPeT 50 (121)
T d1a9xa4 5 EKIMVLGGGPNRIGQGIEFDYCCVHASLALRED--GYETIMVNCNPET 50 (121)
T ss_dssp CEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHT--TCEEEEECCCTTS
T ss_pred CEEEEECCCcCcccccchhhHHHHHHHHHHHhc--CCeEEEEecChhh
Confidence 589999998 7788888889898 9999999998754
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=82.21 E-value=0.7 Score=36.24 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=27.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEe
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVD 33 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d 33 (362)
|||+|=|.|.+|..+.+.+... +.+|+.++
T Consensus 1 ikigINGfGRIGR~~~R~l~~~--~i~iv~IN 30 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSR--GVEVALIN 30 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHhcC--CCEEEEEC
Confidence 7999999999999999988887 89988885
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=82.09 E-value=1.3 Score=37.26 Aligned_cols=94 Identities=17% Similarity=0.083 Sum_probs=55.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhh--hc
Q 017997 2 VKICCIGAGYVGGPTMAVIALK-CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKH--VS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~-~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a--~~ 77 (362)
++|.=+|+|.=++++ .||+. +|+-+|+++|.+++.++..++.... -++. .+..+ ..|..+. ..
T Consensus 105 ~~VLDiG~GsG~lt~--~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~---~g~~--------~~v~~~~~d~~~~~~~~ 171 (266)
T d1o54a_ 105 DRIIDTGVGSGAMCA--VLARAVGSSGKVFAYEKREEFAKLAESNLTK---WGLI--------ERVTIKVRDISEGFDEK 171 (266)
T ss_dssp CEEEEECCTTSHHHH--HHHHHTTTTCEEEEECCCHHHHHHHHHHHHH---TTCG--------GGEEEECCCGGGCCSCC
T ss_pred CEEEECCCCCCHHHH--HHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH---hccc--------cCcEEEecccccccccc
Confidence 467778888755433 44432 2356899999999998876642100 0111 12222 1232221 24
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
.+|.|++-+|.|. .+++.+.+.|++|..++.
T Consensus 172 ~~D~V~~d~p~p~-----------------~~l~~~~~~LKpGG~lv~ 202 (266)
T d1o54a_ 172 DVDALFLDVPDPW-----------------NYIDKCWEALKGGGRFAT 202 (266)
T ss_dssp SEEEEEECCSCGG-----------------GTHHHHHHHEEEEEEEEE
T ss_pred ceeeeEecCCCHH-----------------HHHHHHHhhcCCCCEEEE
Confidence 6899999888653 356777788888776654
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=82.03 E-value=0.37 Score=40.47 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=29.2
Q ss_pred CceEEEEcCChhHHH-----HHHHHHHcCCCCeEEEEeCCHH
Q 017997 1 MVKICCIGAGYVGGP-----TMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~-----lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|.+|+|.|=|-+|-+ +|..|++. |++|.++|.|++
T Consensus 1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~--G~rVllID~D~q 40 (269)
T d1cp2a_ 1 MRQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCDPK 40 (269)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEECTT
T ss_pred CCEEEEECCCcCCHHHHHHHHHHHHHhC--CCcEEEEecCCC
Confidence 678999999999975 45577887 999999999964
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.75 E-value=0.68 Score=37.92 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=28.0
Q ss_pred CceEEEEcCChhHHHHHHHHHHcC-CCCeEEEEeCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKC-PSIEVAVVDIS 35 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~-~G~~V~~~d~~ 35 (362)
|.||.|||.|.-|.+-|...++.+ .++.|.+++.+
T Consensus 1 ~~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~ 36 (233)
T d1xdia1 1 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD 36 (233)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred CcEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence 679999999999998887777652 14689999964
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.58 E-value=1.3 Score=38.51 Aligned_cols=96 Identities=13% Similarity=0.061 Sum_probs=51.5
Q ss_pred eEEEEcCChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-------hcCCCEEEe-cCHH
Q 017997 3 KICCIGAGYVGGPTMAVIALK-CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-------CRGKNLFFS-TDVE 73 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~-~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-------~~~~~l~~t-~d~~ 73 (362)
+|.=+|+|.=++++ .||+. +|.-+|+.+|++++.++..++.. +..... ....++.+. .|..
T Consensus 101 rVLE~GtGsG~lt~--~LAr~vg~~G~V~t~E~~~~~~~~A~~n~--------~~~~~~~~~~~~~~~~~nv~~~~~di~ 170 (324)
T d2b25a1 101 TVLEAGSGSGGMSL--FLSKAVGSQGRVISFEVRKDHHDLAKKNY--------KHWRDSWKLSHVEEWPDNVDFIHKDIS 170 (324)
T ss_dssp EEEEECCTTSHHHH--HHHHHHCTTCEEEEEESSHHHHHHHHHHH--------HHHHHHHTTTCSSCCCCCEEEEESCTT
T ss_pred EEEEecccccHHHH--HHHHHhCCCcEEEEecCCHHHHHHHHHHH--------HHhhhhhhhhhhhccccceeEEecchh
Confidence 45556776644333 23321 12348999999999887655420 100000 011234332 2222
Q ss_pred hh-----hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 74 KH-----VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 74 ~a-----~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+. -...|.||+-+|.|. .+++.+.+.|++|..++.
T Consensus 171 ~~~~~~~~~~fD~V~LD~p~P~-----------------~~l~~~~~~LKpGG~lv~ 210 (324)
T d2b25a1 171 GATEDIKSLTFDAVALDMLNPH-----------------VTLPVFYPHLKHGGVCAV 210 (324)
T ss_dssp CCC-------EEEEEECSSSTT-----------------TTHHHHGGGEEEEEEEEE
T ss_pred hcccccCCCCcceEeecCcCHH-----------------HHHHHHHHhccCCCEEEE
Confidence 11 135699999888764 256778888998876654
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.21 E-value=0.57 Score=38.83 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=27.3
Q ss_pred eEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|+++| | .+.+|..+|..|++. |++|++.|++++
T Consensus 8 K~~lITGas~GIG~aia~~la~~--Ga~V~~~~r~~~ 42 (237)
T d1uzma1 8 RSVLVTGGNRGIGLAIAQRLAAD--GHKVAVTHRGSG 42 (237)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSSC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCcc
Confidence 44444 5 567999999999999 999999999754
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=81.02 E-value=1.4 Score=36.16 Aligned_cols=41 Identities=17% Similarity=0.033 Sum_probs=30.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++|.=+|||.=. ++..|++..|+-.|+++|.++..++.+++
T Consensus 76 ~~VLDlGcGsG~--~~~~la~~~~~g~V~aVDiS~~~i~~a~~ 116 (230)
T d1g8sa_ 76 SKILYLGASAGT--TPSHVADIADKGIVYAIEYAPRIMRELLD 116 (230)
T ss_dssp CEEEEESCCSSH--HHHHHHHHTTTSEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCEEcCH--HHHHHHHhCCCCEEEEEeCcHHHHHHHHH
Confidence 578889988754 34566665455699999999999887765
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=80.95 E-value=0.38 Score=40.43 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=25.6
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
|||-|.|. |++|..+...|.+. |+ ++.++++
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~--g~-~v~~~~~ 32 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPV--GN-LIALDVH 32 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTT--SE-EEEECTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CC-EEEEECC
Confidence 89999995 99999999999987 66 5555654
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=80.34 E-value=1.1 Score=34.36 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=44.7
Q ss_pred ceEEEEcC---ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIGA---GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGl---G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
+||+++|= +.+..+++..+++- |.++++..... . . |. ...+..+.++++++++
T Consensus 4 l~i~~vGD~~~srv~~Sl~~~~~~~--g~~~~i~~P~~--~---~--------~~---------~~~~~~~~~~~ea~~~ 59 (151)
T d2at2a2 4 LTVSIHGDIKHSRVARSNAEVLTRL--GARVLFSGPSE--W---Q--------DE---------ENTFGTYVSMDEAVES 59 (151)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHc--CCcccccCCch--h---h--------cc---------ccceeEEEechhcccc
Confidence 58999996 57999999999988 88888776531 1 1 00 1246677788899999
Q ss_pred CcEEEEe
Q 017997 79 ADIVFVS 85 (362)
Q Consensus 79 aDvVii~ 85 (362)
+|+|...
T Consensus 60 aDviy~~ 66 (151)
T d2at2a2 60 SDVVMLL 66 (151)
T ss_pred Cceeeee
Confidence 9998765
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=80.30 E-value=2.8 Score=31.79 Aligned_cols=68 Identities=6% Similarity=0.031 Sum_probs=45.1
Q ss_pred ceEEEEcCC---hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIGAG---YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG---~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
.||++||=+ .+..+++..+++- |.+++.+-..+.. .+. ..... .....+..++|+.+++++
T Consensus 4 l~i~~vGD~~~sRv~~Sl~~~l~~~--g~~~~~~~p~~~~------------~~~-~~~~~-~~~~~~~~~~d~~eai~~ 67 (153)
T d1pg5a2 4 LVFALLGDLKYARTVNSLLRILTRF--RPKLVYLISPQLL------------RAR-KEILD-ELNYPVKEVENPFEVINE 67 (153)
T ss_dssp CEEEEEECCSSCHHHHHHHHHGGGS--CCSEEEEECCGGG------------CCC-HHHHT-TCCSCEEEESCGGGTGGG
T ss_pred CEEEEECCCCccHHHHHHHHHHHHc--CCeeEEEeccccc------------ccc-hhhcc-cCCCeEEEEeCHHHHhhc
Confidence 489999964 3899999988887 7877655432110 010 11111 123468889999999999
Q ss_pred CcEEEEe
Q 017997 79 ADIVFVS 85 (362)
Q Consensus 79 aDvVii~ 85 (362)
+|+|...
T Consensus 68 aDvvy~~ 74 (153)
T d1pg5a2 68 VDVLYVT 74 (153)
T ss_dssp CSEEEEE
T ss_pred CCeEEEe
Confidence 9988764
|